APT56_00005 PF04998 RNA polymerase Rpb1, domain 5 APT56_00010 PF00562 RNA polymerase Rpb2, domain 6 APT56_00010 PF04560 RNA polymerase Rpb2, domain 7 APT56_00010 PF04561 RNA polymerase Rpb2, domain 2 APT56_00010 PF04563 RNA polymerase beta subunit APT56_00010 PF04565 RNA polymerase Rpb2, domain 3 APT56_00010 PF10385 RNA polymerase beta subunit external 1 domain APT56_00015 PF00542 Ribosomal protein L7/L12 C-terminal domain APT56_00015 PF16320 APT56_00015 APT56_00020 PF00466 Ribosomal protein L10 APT56_00025 PF00687 Ribosomal protein L1p/L10e family APT56_00030 PF00298 Ribosomal protein L11, RNA binding domain APT56_00030 PF03946 Ribosomal protein L11, N-terminal domain APT56_00035 PF00467 KOW motif APT56_00035 PF02357 Transcription termination factor nusG APT56_00040 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APT56_00050 PF00009 Elongation factor Tu GTP binding domain APT56_00050 PF03143 Elongation factor Tu C-terminal domain APT56_00050 PF03144 Elongation factor Tu domain 2 APT56_00070 PF00465 Iron-containing alcohol dehydrogenase APT56_00075 PF00171 Aldehyde dehydrogenase family APT56_00080 PF00120 Glutamine synthetase, catalytic domain APT56_00085 PF00459 Inositol monophosphatase family APT56_00090 PF13343 Bacterial extracellular solute-binding protein APT56_00095 PF00005 ABC transporter APT56_00095 PF08402 TOBE domain APT56_00100 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00105 PF00455 APT56_00105 APT56_00105 PF08220 DeoR-like helix-turn-helix domain APT56_00110 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00115 PF00581 Rhodanese-like domain APT56_00120 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00130 PF03466 LysR substrate binding domain APT56_00135 PF00710 Asparaginase APT56_00140 PF02195 ParB-like nuclease domain APT56_00145 PF00583 Acetyltransferase (GNAT) family APT56_00150 PF13614 AAA domain APT56_00155 PF02527 rRNA small subunit methyltransferase G APT56_00160 PF01134 Glucose inhibited division protein A APT56_00160 PF13932 GidA associated domain 3 APT56_00165 PF00313 'Cold-shock' DNA-binding domain APT56_00170 PF05145 APT56_00170 APT56_00175 PF00155 Aminotransferase class I and II APT56_00180 PF01970 APT56_00180 APT56_00185 PF07331 APT56_00185 APT56_00190 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00195 PF00512 His Kinase A (phospho-acceptor) domain APT56_00195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_00195 PF08521 APT56_00195 APT56_00200 PF00072 Response regulator receiver domain APT56_00200 PF00486 Transcriptional regulatory protein, C terminal APT56_00205 PF00654 Voltage gated chloride channel APT56_00210 PF00583 Acetyltransferase (GNAT) family APT56_00215 PF01926 50S ribosome-binding GTPase APT56_00215 PF10396 GTP-binding protein TrmE N-terminus APT56_00215 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE APT56_00220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_00225 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00230 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00230 PF12911 APT56_00230 APT56_00235 PF00005 ABC transporter APT56_00235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_00240 PF00005 ABC transporter APT56_00240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_00245 PF01546 Peptidase family M20/M25/M40 APT56_00245 PF07687 Peptidase dimerisation domain APT56_00250 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT56_00260 PF00291 Pyridoxal-phosphate dependent enzyme APT56_00265 PF00199 Catalase APT56_00265 PF06628 Catalase-related immune-responsive APT56_00270 PF02096 60Kd inner membrane protein APT56_00270 PF14849 YidC periplasmic domain APT56_00275 PF00825 Ribonuclease P APT56_00280 PF00468 Ribosomal protein L34 APT56_00285 PF00308 Bacterial dnaA protein APT56_00285 PF08299 Bacterial dnaA protein helix-turn-helix APT56_00285 PF11638 DnaA N-terminal domain APT56_00290 PF00712 DNA polymerase III beta subunit, N-terminal domain APT56_00290 PF02767 DNA polymerase III beta subunit, central domain APT56_00290 PF02768 DNA polymerase III beta subunit, C-terminal domain APT56_00295 PF00204 DNA gyrase B APT56_00295 PF00986 DNA gyrase B subunit, carboxyl terminus APT56_00295 PF01751 Toprim domain APT56_00295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00300 PF03466 LysR substrate binding domain APT56_00305 PF00857 Isochorismatase family APT56_00310 PF05977 Transmembrane secretion effector APT56_00315 PF02678 Pirin APT56_00320 PF07235 APT56_00320 APT56_00325 PF07969 Amidohydrolase family APT56_00330 PF07681 APT56_00330 APT56_00335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00335 PF03466 LysR substrate binding domain APT56_00340 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_00345 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00350 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00355 PF00005 ABC transporter APT56_00360 PF01212 Beta-eliminating lyase APT56_00365 PF00892 EamA-like transporter family APT56_00370 PF00708 Acylphosphatase APT56_00375 PF05721 Phytanoyl-CoA dioxygenase (PhyH) APT56_00380 PF01070 FMN-dependent dehydrogenase APT56_00385 PF01614 Bacterial transcriptional regulator APT56_00385 PF09339 IclR helix-turn-helix domain APT56_00390 PF00005 ABC transporter APT56_00390 PF08402 TOBE domain APT56_00395 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00400 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00405 PF13510 2Fe-2S iron-sulfur cluster binding domain APT56_00410 PF04324 BFD-like [2Fe-2S] binding domain APT56_00410 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_00415 PF01266 FAD dependent oxidoreductase APT56_00420 PF13416 Bacterial extracellular solute-binding protein APT56_00425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_00430 PF06445 GyrI-like small molecule binding domain APT56_00430 PF12833 Helix-turn-helix domain APT56_00435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00435 PF03466 LysR substrate binding domain APT56_00440 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00445 PF01968 Hydantoinase/oxoprolinase APT56_00445 PF05378 APT56_00445 APT56_00450 PF02538 APT56_00450 APT56_00455 PF00392 Bacterial regulatory proteins, gntR family APT56_00455 PF07702 UTRA domain APT56_00460 PF13343 Bacterial extracellular solute-binding protein APT56_00465 PF00005 ABC transporter APT56_00465 PF08402 TOBE domain APT56_00470 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00475 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00480 PF01266 FAD dependent oxidoreductase APT56_00485 PF13510 2Fe-2S iron-sulfur cluster binding domain APT56_00490 PF04324 BFD-like [2Fe-2S] binding domain APT56_00490 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_00495 PF01266 FAD dependent oxidoreductase APT56_00500 PF01042 Endoribonuclease L-PSP APT56_00505 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_00505 PF08479 POTRA domain, ShlB-type APT56_00505 PF17287 APT56_00505 APT56_00510 PF05860 haemagglutination activity domain APT56_00510 PF13332 APT56_00510 APT56_00515 PF13332 APT56_00515 APT56_00525 PF13683 APT56_00525 APT56_00530 PF07969 Amidohydrolase family APT56_00535 PF02653 APT56_00535 APT56_00540 PF02653 APT56_00540 APT56_00545 PF00005 ABC transporter APT56_00550 PF02608 Basic membrane protein APT56_00555 PF00581 Rhodanese-like domain APT56_00555 PF09335 APT56_00555 APT56_00560 PF02558 Ketopantoate reductase PanE/ApbA APT56_00560 PF08546 Ketopantoate reductase PanE/ApbA C terminal APT56_00565 PF13460 NADH(P)-binding APT56_00570 PF12680 SnoaL-like domain APT56_00575 PF01613 Flavin reductase like domain APT56_00580 PF05014 Nucleoside 2-deoxyribosyltransferase APT56_00585 PF00440 Bacterial regulatory proteins, tetR family APT56_00590 PF07690 Major Facilitator Superfamily APT56_00595 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APT56_00600 PF00856 SET domain APT56_00605 PF01062 APT56_00605 APT56_00610 PF01037 AsnC family APT56_00610 PF13404 AsnC-type helix-turn-helix domain APT56_00615 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_00615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_00615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_00620 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_00625 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00630 PF00005 ABC transporter APT56_00635 PF09084 NMT1/THI5 like APT56_00640 PF01131 DNA topoisomerase APT56_00640 PF01751 Toprim domain APT56_00640 PF13342 APT56_00640 APT56_00645 PF09925 APT56_00645 APT56_00645 PF14345 APT56_00645 APT56_00645 PF14351 APT56_00645 APT56_00650 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT56_00655 PF04361 APT56_00655 APT56_00660 PF06808 APT56_00660 APT56_00665 PF16868 APT56_00665 APT56_00670 PF01168 Alanine racemase, N-terminal domain APT56_00670 PF14031 Putative serine dehydratase domain APT56_00675 PF00005 ABC transporter APT56_00680 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00685 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00690 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_00695 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00700 PF00202 Aminotransferase class-III APT56_00705 PF02384 N-6 DNA Methylase APT56_00715 PF00271 Helicase conserved C-terminal domain APT56_00730 PF01965 DJ-1/PfpI family APT56_00730 PF12833 Helix-turn-helix domain APT56_00735 PF12823 APT56_00735 APT56_00740 PF03653 APT56_00740 APT56_00755 PF05594 APT56_00755 APT56_00755 PF05860 haemagglutination activity domain APT56_00755 PF13332 APT56_00755 APT56_00765 PF06803 APT56_00765 APT56_00775 PF01810 APT56_00775 APT56_00780 PF13827 APT56_00780 APT56_00785 PF00857 Isochorismatase family APT56_00795 PF00155 Aminotransferase class I and II APT56_00795 PF00392 Bacterial regulatory proteins, gntR family APT56_00800 PF01925 APT56_00800 APT56_00805 PF09234 Domain of unknown function (DUF1963) APT56_00810 PF05977 Transmembrane secretion effector APT56_00815 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APT56_00815 PF00364 Biotin-requiring enzyme APT56_00815 PF02785 Biotin carboxylase C-terminal domain APT56_00815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_00820 PF01039 Carboxyl transferase domain APT56_00825 PF00108 Thiolase, N-terminal domain APT56_00825 PF02803 Thiolase, C-terminal domain APT56_00830 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) APT56_00835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_00835 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_00835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_00840 PF01546 Peptidase family M20/M25/M40 APT56_00840 PF07687 Peptidase dimerisation domain APT56_00845 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00855 PF02694 APT56_00855 APT56_00860 PF13411 MerR HTH family regulatory protein APT56_00865 PF00753 Metallo-beta-lactamase superfamily APT56_00870 PF01810 APT56_00870 APT56_00875 PF00881 Nitroreductase family APT56_00880 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_00890 PF13458 Periplasmic binding protein APT56_00895 PF01323 DSBA-like thioredoxin domain APT56_00900 PF05036 Sporulation related domain APT56_00905 PF00750 tRNA synthetases class I (R) APT56_00905 PF03485 Arginyl tRNA synthetase N terminal domain APT56_00905 PF05746 DALR anticodon binding domain APT56_00910 PF08895 APT56_00910 APT56_00920 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00925 PF00528 Binding-protein-dependent transport system inner membrane component APT56_00930 PF13416 Bacterial extracellular solute-binding protein APT56_00935 PF00005 ABC transporter APT56_00935 PF08402 TOBE domain APT56_00940 PF00149 Calcineurin-like phosphoesterase APT56_00945 PF00356 Bacterial regulatory proteins, lacI family APT56_00945 PF13377 Periplasmic binding protein-like domain APT56_00950 PF01425 Amidase APT56_00955 PF00682 HMGL-like APT56_00955 PF08502 LeuA allosteric (dimerisation) domain APT56_00960 PF03401 Tripartite tricarboxylate transporter family receptor APT56_00970 PF00309 APT56_00970 APT56_00970 PF04552 Sigma-54, DNA binding domain APT56_00970 PF04963 Sigma-54 factor, core binding domain APT56_00975 PF04324 BFD-like [2Fe-2S] binding domain APT56_00980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_00980 PF03466 LysR substrate binding domain APT56_00985 PF00892 EamA-like transporter family APT56_00990 PF00210 Ferritin-like domain APT56_01000 PF00009 Elongation factor Tu GTP binding domain APT56_01000 PF03144 Elongation factor Tu domain 2 APT56_01000 PF16658 APT56_01000 APT56_01005 PF01810 APT56_01005 APT56_01010 PF00270 DEAD/DEAH box helicase APT56_01010 PF00271 Helicase conserved C-terminal domain APT56_01015 PF06097 APT56_01015 APT56_01020 PF06097 APT56_01020 APT56_01025 PF01979 Amidohydrolase family APT56_01030 PF00005 ABC transporter APT56_01030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_01035 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01035 PF12911 APT56_01035 APT56_01040 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_01050 PF01926 50S ribosome-binding GTPase APT56_01050 PF11981 APT56_01050 APT56_01055 PF11067 APT56_01055 APT56_01060 PF12833 Helix-turn-helix domain APT56_01065 PF00892 EamA-like transporter family APT56_01070 PF00266 Aminotransferase class-V APT56_01075 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease APT56_01080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01080 PF03466 LysR substrate binding domain APT56_01095 PF02447 APT56_01095 APT56_01100 PF01810 APT56_01100 APT56_01105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_01120 PF08238 Sel1 repeat APT56_01125 PF04386 Stringent starvation protein B APT56_01130 PF00043 Glutathione S-transferase, C-terminal domain APT56_01130 PF13417 Glutathione S-transferase, N-terminal domain APT56_01135 PF02167 Cytochrome C1 family APT56_01140 PF00032 Cytochrome b(C-terminal)/b6/petD APT56_01140 PF00033 Cytochrome b(N-terminal)/b6/petB APT56_01145 PF00355 Rieske [2Fe-2S] domain APT56_01150 PF01741 Large-conductance mechanosensitive channel, MscL APT56_01155 PF01784 NIF3 (NGG1p interacting factor 3) APT56_01160 PF13180 PDZ domain APT56_01160 PF13365 Trypsin-like peptidase domain APT56_01165 PF13560 Helix-turn-helix domain APT56_01170 PF00902 Sec-independent protein translocase protein (TatC) APT56_01175 PF02416 mttA/Hcf106 family APT56_01180 PF02416 mttA/Hcf106 family APT56_01185 PF01230 HIT domain APT56_01190 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APT56_01195 PF01502 Phosphoribosyl-AMP cyclohydrolase APT56_01200 PF00977 Histidine biosynthesis protein APT56_01205 PF00977 Histidine biosynthesis protein APT56_01210 PF00117 Glutamine amidotransferase class-I APT56_01215 PF00475 Imidazoleglycerol-phosphate dehydratase APT56_01220 PF00155 Aminotransferase class I and II APT56_01225 PF00815 Histidinol dehydrogenase APT56_01230 PF01634 ATP phosphoribosyltransferase APT56_01235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT56_01240 PF01722 BolA-like protein APT56_01245 PF01061 APT56_01245 APT56_01250 PF00005 ABC transporter APT56_01255 PF05494 Toluene tolerance, Ttg2 APT56_01260 PF04333 APT56_01260 APT56_01265 PF02470 APT56_01265 APT56_01270 PF02405 APT56_01270 APT56_01275 PF00005 ABC transporter APT56_01280 PF03060 Nitronate monooxygenase APT56_01285 PF03401 Tripartite tricarboxylate transporter family receptor APT56_01290 PF06779 APT56_01290 APT56_01295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01295 PF03466 LysR substrate binding domain APT56_01300 PF03922 OmpW family APT56_01305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01305 PF03466 LysR substrate binding domain APT56_01310 PF03746 LamB/YcsF family APT56_01315 PF00364 Biotin-requiring enzyme APT56_01320 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APT56_01320 PF02785 Biotin carboxylase C-terminal domain APT56_01320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_01325 PF02682 Allophanate hydrolase subunit 1 APT56_01330 PF02626 Allophanate hydrolase subunit 2 APT56_01340 PF02417 APT56_01340 APT56_01345 PF02417 APT56_01345 APT56_01350 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_01350 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT56_01355 PF00310 Glutamine amidotransferases class-II APT56_01355 PF01493 GXGXG motif APT56_01355 PF01645 Conserved region in glutamate synthase APT56_01355 PF04898 Glutamate synthase central domain APT56_01365 PF00756 Putative esterase APT56_01375 PF04542 Sigma-70 region 2 APT56_01375 PF04545 Sigma-70, region 4 APT56_01380 PF00149 Calcineurin-like phosphoesterase APT56_01385 PF00027 Cyclic nucleotide-binding domain APT56_01385 PF00999 Sodium/hydrogen exchanger family APT56_01390 PF00293 NUDIX domain APT56_01395 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT56_01395 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APT56_01395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_01400 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT56_01405 PF11174 APT56_01405 APT56_01410 PF00510 Cytochrome c oxidase subunit III APT56_01415 PF11137 APT56_01415 APT56_01420 PF02104 APT56_01420 APT56_01430 PF02628 APT56_01430 APT56_01435 PF01040 UbiA prenyltransferase family APT56_01440 PF02630 SCO1/SenC APT56_01445 PF12512 APT56_01445 APT56_01450 PF05433 APT56_01450 APT56_01460 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_01460 PF12804 MobA-like NTP transferase domain APT56_01465 PF07690 Major Facilitator Superfamily APT56_01470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT56_01470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT56_01470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT56_01475 PF00534 Glycosyl transferases group 1 APT56_01475 PF13439 Glycosyltransferase Family 4 APT56_01480 PF01037 AsnC family APT56_01480 PF13412 Winged helix-turn-helix DNA-binding APT56_01485 PF01380 SIS domain APT56_01485 PF13522 Glutamine amidotransferase domain APT56_01490 PF00583 Acetyltransferase (GNAT) family APT56_01495 PF02311 AraC-like ligand binding domain APT56_01495 PF12833 Helix-turn-helix domain APT56_01500 PF08908 APT56_01500 APT56_01505 PF01717 Cobalamin-independent synthase, Catalytic domain APT56_01510 PF01613 Flavin reductase like domain APT56_01515 PF02219 Methylenetetrahydrofolate reductase APT56_01515 PF12225 APT56_01515 APT56_01530 PF01564 Spermine/spermidine synthase APT56_01535 PF14080 APT56_01535 APT56_01540 PF00890 FAD binding domain APT56_01540 PF02910 Fumarate reductase flavoprotein C-term APT56_01545 PF02445 Quinolinate synthetase A protein APT56_01550 PF07690 Major Facilitator Superfamily APT56_01555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01555 PF03466 LysR substrate binding domain APT56_01560 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT56_01565 PF00563 EAL domain APT56_01565 PF00990 GGDEF domain APT56_01565 PF08448 PAS fold APT56_01565 PF13426 PAS domain APT56_01570 PF01926 50S ribosome-binding GTPase APT56_01570 PF05128 APT56_01570 APT56_01575 PF02548 Ketopantoate hydroxymethyltransferase APT56_01580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01580 PF03466 LysR substrate binding domain APT56_01585 PF00474 Sodium:solute symporter family APT56_01590 PF00491 Arginase family APT56_01595 PF13231 APT56_01595 APT56_01600 PF00535 Glycosyl transferase family 2 APT56_01605 PF00873 AcrB/AcrD/AcrF family APT56_01610 PF16576 APT56_01610 APT56_01615 PF02321 Outer membrane efflux protein APT56_01625 PF00072 Response regulator receiver domain APT56_01625 PF00486 Transcriptional regulatory protein, C terminal APT56_01630 PF00512 His Kinase A (phospho-acceptor) domain APT56_01630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_01640 PF00149 Calcineurin-like phosphoesterase APT56_01640 PF02872 5'-nucleotidase, C-terminal domain APT56_01645 PF00107 Zinc-binding dehydrogenase APT56_01645 PF08240 Alcohol dehydrogenase GroES-like domain APT56_01650 PF02583 Metal-sensitive transcriptional repressor APT56_01655 PF00392 Bacterial regulatory proteins, gntR family APT56_01655 PF07702 UTRA domain APT56_01660 PF05962 HutD APT56_01665 PF01175 Urocanase APT56_01665 PF17391 APT56_01665 APT56_01665 PF17392 APT56_01665 APT56_01670 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT56_01675 PF00221 Aromatic amino acid lyase APT56_01680 PF00324 Amino acid permease APT56_01685 PF01979 Amidohydrolase family APT56_01690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_01690 PF02203 Tar ligand binding domain homologue APT56_01695 PF07690 Major Facilitator Superfamily APT56_01700 PF05229 APT56_01700 APT56_01705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain APT56_01710 PF00577 Outer membrane usher protein APT56_01710 PF13953 PapC C-terminal domain APT56_01715 PF05229 APT56_01715 APT56_01720 PF10136 APT56_01720 APT56_01725 PF05977 Transmembrane secretion effector APT56_01735 PF00174 Oxidoreductase molybdopterin binding domain APT56_01735 PF03404 Mo-co oxidoreductase dimerisation domain APT56_01740 PF10990 APT56_01740 APT56_01750 PF14518 Iron-containing redox enzyme APT56_01755 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_01765 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_01770 PF00392 Bacterial regulatory proteins, gntR family APT56_01770 PF07729 FCD domain APT56_01775 PF01925 APT56_01775 APT56_01785 PF00171 Aldehyde dehydrogenase family APT56_01790 PF03928 Domain of unknown function (DUF336) APT56_01795 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_01795 PF00175 Oxidoreductase NAD-binding domain APT56_01795 PF00970 Oxidoreductase FAD-binding domain APT56_01800 PF00582 Universal stress protein family APT56_01805 PF00005 ABC transporter APT56_01805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_01810 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01815 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_01830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_01830 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT56_01835 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_01835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_01835 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT56_01840 PF00296 Luciferase-like monooxygenase APT56_01845 PF03180 NLPA lipoprotein APT56_01850 PF03358 NADPH-dependent FMN reductase APT56_01855 PF09084 NMT1/THI5 like APT56_01860 PF00296 Luciferase-like monooxygenase APT56_01865 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_01870 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT56_01875 PF00005 ABC transporter APT56_01880 PF00528 Binding-protein-dependent transport system inner membrane component APT56_01885 PF03180 NLPA lipoprotein APT56_01890 PF00005 ABC transporter APT56_01895 PF03459 TOBE domain APT56_01905 PF01522 Polysaccharide deacetylase APT56_01910 PF04116 APT56_01910 APT56_01915 PF03061 Thioesterase superfamily APT56_01920 PF06742 Protein of unknown function (DUF1214) APT56_01920 PF06863 Protein of unknown function (DUF1254) APT56_01925 PF00384 Molybdopterin oxidoreductase APT56_01925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT56_01930 PF00384 Molybdopterin oxidoreductase APT56_01930 PF01568 Molydopterin dinucleotide binding domain APT56_01935 PF09163 Formate dehydrogenase N, transmembrane APT56_01935 PF13247 4Fe-4S dicluster domain APT56_01940 PF01292 Prokaryotic cytochrome b561 APT56_01945 PF04216 Protein involved in formate dehydrogenase formation APT56_01950 PF03841 L-seryl-tRNA selenium transferase APT56_01950 PF12390 APT56_01950 APT56_01955 PF00009 Elongation factor Tu GTP binding domain APT56_01955 PF09106 Elongation factor SelB, winged helix APT56_01955 PF09107 Elongation factor SelB, winged helix APT56_01965 PF00535 Glycosyl transferase family 2 APT56_01970 PF00578 AhpC/TSA family APT56_01975 PF01841 Transglutaminase-like superfamily APT56_01980 PF00586 AIR synthase related protein, N-terminal domain APT56_01980 PF02769 AIR synthase related protein, C-terminal domain APT56_01985 PF00884 Sulfatase APT56_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_01990 PF03466 LysR substrate binding domain APT56_01995 PF11142 APT56_01995 APT56_02000 PF01323 DSBA-like thioredoxin domain APT56_02005 PF05610 APT56_02005 APT56_02010 PF00171 Aldehyde dehydrogenase family APT56_02015 PF00158 Sigma-54 interaction domain APT56_02015 PF01590 GAF domain APT56_02015 PF02954 Bacterial regulatory protein, Fis family APT56_02020 PF00218 Indole-3-glycerol phosphate synthase APT56_02025 PF00591 Glycosyl transferase family, a/b domain APT56_02025 PF02885 Glycosyl transferase family, helical bundle domain APT56_02030 PF00117 Glutamine amidotransferase class-I APT56_02035 PF00425 chorismate binding enzyme APT56_02035 PF04715 Anthranilate synthase component I, N terminal region APT56_02040 PF13419 Haloacid dehalogenase-like hydrolase APT56_02045 PF00834 Ribulose-phosphate 3 epimerase family APT56_02050 PF04379 Protein of unknown function (DUF525) APT56_02055 PF03562 MltA specific insert domain APT56_02055 PF06725 3D domain APT56_02060 PF01494 FAD binding domain APT56_02065 PF10411 Disulfide bond isomerase protein N-terminus APT56_02065 PF13098 Thioredoxin-like domain APT56_02070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_02070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_02075 PF01171 PP-loop family APT56_02080 PF02152 Dihydroneopterin aldolase APT56_02085 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_02090 PF00561 alpha/beta hydrolase fold APT56_02095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02095 PF03466 LysR substrate binding domain APT56_02100 PF01177 Asp/Glu/Hydantoin racemase APT56_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02105 PF03466 LysR substrate binding domain APT56_02110 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02115 PF01144 Coenzyme A transferase APT56_02120 PF01144 Coenzyme A transferase APT56_02125 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02130 PF05299 M61 glycyl aminopeptidase APT56_02130 PF13180 PDZ domain APT56_02135 PF00378 Enoyl-CoA hydratase/isomerase family APT56_02140 PF06742 Protein of unknown function (DUF1214) APT56_02140 PF06863 Protein of unknown function (DUF1254) APT56_02145 PF03899 APT56_02145 APT56_02150 PF00119 ATP synthase A chain APT56_02155 PF00137 ATP synthase subunit C APT56_02160 PF00430 ATP synthase B/B' CF(0) APT56_02165 PF00213 ATP synthase delta (OSCP) subunit APT56_02170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_02170 PF00306 ATP synthase alpha/beta chain, C terminal domain APT56_02170 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT56_02175 PF00231 ATP synthase APT56_02180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_02180 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT56_02185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APT56_02190 PF02954 Bacterial regulatory protein, Fis family APT56_02195 PF01208 Uroporphyrinogen decarboxylase (URO-D) APT56_02200 PF00270 DEAD/DEAH box helicase APT56_02200 PF00271 Helicase conserved C-terminal domain APT56_02205 PF00580 UvrD/REP helicase N-terminal domain APT56_02205 PF13361 UvrD-like helicase C-terminal domain APT56_02210 PF02311 AraC-like ligand binding domain APT56_02210 PF12833 Helix-turn-helix domain APT56_02215 PF01212 Beta-eliminating lyase APT56_02220 PF13230 Glutamine amidotransferases class-II APT56_02225 PF00106 short chain dehydrogenase APT56_02230 PF01965 DJ-1/PfpI family APT56_02230 PF12833 Helix-turn-helix domain APT56_02235 PF14602 Hexapeptide repeat of succinyl-transferase APT56_02235 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle APT56_02240 PF03976 Polyphosphate kinase 2 (PPK2) APT56_02245 PF01546 Peptidase family M20/M25/M40 APT56_02245 PF07687 Peptidase dimerisation domain APT56_02255 PF00005 ABC transporter APT56_02255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_02260 PF00005 ABC transporter APT56_02260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_02265 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02265 PF12911 APT56_02265 APT56_02270 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_02280 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APT56_02285 PF01546 Peptidase family M20/M25/M40 APT56_02285 PF07687 Peptidase dimerisation domain APT56_02290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02290 PF03466 LysR substrate binding domain APT56_02295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_02305 PF01256 Carbohydrate kinase APT56_02310 PF00378 Enoyl-CoA hydratase/isomerase family APT56_02315 PF00378 Enoyl-CoA hydratase/isomerase family APT56_02320 PF03060 Nitronate monooxygenase APT56_02325 PF00440 Bacterial regulatory proteins, tetR family APT56_02330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_02330 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_02330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_02335 PF02515 CoA-transferase family III APT56_02340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_02340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_02345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_02365 PF13609 Gram-negative porin APT56_02370 PF13609 Gram-negative porin APT56_02380 PF07883 Cupin domain APT56_02385 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_02390 PF13458 Periplasmic binding protein APT56_02395 PF02653 APT56_02395 APT56_02400 PF02653 APT56_02400 APT56_02405 PF00005 ABC transporter APT56_02405 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_02410 PF00005 ABC transporter APT56_02415 PF00795 Carbon-nitrogen hydrolase APT56_02420 PF00392 Bacterial regulatory proteins, gntR family APT56_02420 PF07729 FCD domain APT56_02425 PF07859 alpha/beta hydrolase fold APT56_02430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02430 PF03466 LysR substrate binding domain APT56_02435 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02440 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APT56_02445 PF08212 Lipocalin-like domain APT56_02450 PF04262 Glutamate-cysteine ligase APT56_02455 PF12146 Putative lysophospholipase APT56_02465 PF00196 Bacterial regulatory proteins, luxR family APT56_02470 PF03547 APT56_02470 APT56_02480 PF02368 Bacterial Ig-like domain (group 2) APT56_02480 PF05345 Putative Ig domain APT56_02485 PF02615 Malate/L-lactate dehydrogenase APT56_02490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_02490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_02495 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02500 PF04295 APT56_02500 APT56_02505 PF08666 SAF domain APT56_02510 PF00392 Bacterial regulatory proteins, gntR family APT56_02510 PF07702 UTRA domain APT56_02515 PF00561 alpha/beta hydrolase fold APT56_02520 PF07021 Methionine biosynthesis protein MetW APT56_02525 PF07690 Major Facilitator Superfamily APT56_02530 PF00582 Universal stress protein family APT56_02535 PF03458 APT56_02535 APT56_02540 PF00392 Bacterial regulatory proteins, gntR family APT56_02540 PF07729 FCD domain APT56_02545 PF03746 LamB/YcsF family APT56_02550 PF02626 Allophanate hydrolase subunit 2 APT56_02555 PF02682 Allophanate hydrolase subunit 1 APT56_02560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_02565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02565 PF03466 LysR substrate binding domain APT56_02570 PF01381 Helix-turn-helix APT56_02575 PF13420 Acetyltransferase (GNAT) domain APT56_02580 PF13518 Helix-turn-helix domain APT56_02585 PF00665 Integrase core domain APT56_02590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_02590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_02595 PF04214 APT56_02595 APT56_02600 PF05275 APT56_02600 APT56_02605 PF00394 Multicopper oxidase APT56_02605 PF07731 Multicopper oxidase APT56_02605 PF07732 Multicopper oxidase APT56_02610 PF00127 Copper binding proteins, plastocyanin/azurin family APT56_02615 PF00512 His Kinase A (phospho-acceptor) domain APT56_02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_02620 PF00072 Response regulator receiver domain APT56_02620 PF00486 Transcriptional regulatory protein, C terminal APT56_02625 PF00512 His Kinase A (phospho-acceptor) domain APT56_02625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_02625 PF11808 APT56_02625 APT56_02630 PF00072 Response regulator receiver domain APT56_02630 PF00486 Transcriptional regulatory protein, C terminal APT56_02635 PF01209 ubiE/COQ5 methyltransferase family APT56_02640 PF04280 Tim44-like domain APT56_02645 PF02036 SCP-2 sterol transfer family APT56_02650 PF03109 APT56_02650 APT56_02660 PF01467 Cytidylyltransferase APT56_02665 PF02321 Outer membrane efflux protein APT56_02670 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) APT56_02675 PF08543 Phosphomethylpyrimidine kinase APT56_02680 PF05690 Thiazole biosynthesis protein ThiG APT56_02685 PF01497 Periplasmic binding protein APT56_02690 PF00593 TonB dependent receptor APT56_02690 PF07715 TonB-dependent Receptor Plug Domain APT56_02695 PF00809 Pterin binding enzyme APT56_02695 PF02310 B12 binding domain APT56_02695 PF02574 Homocysteine S-methyltransferase APT56_02695 PF02607 B12 binding domain APT56_02695 PF02965 Vitamin B12 dependent methionine synthase, activation domain APT56_02700 PF00392 Bacterial regulatory proteins, gntR family APT56_02700 PF07729 FCD domain APT56_02705 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_02710 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_02715 PF00107 Zinc-binding dehydrogenase APT56_02715 PF08240 Alcohol dehydrogenase GroES-like domain APT56_02720 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02725 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02730 PF00005 ABC transporter APT56_02735 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_02735 PF13378 Enolase C-terminal domain-like APT56_02740 PF01232 Mannitol dehydrogenase Rossmann domain APT56_02740 PF08125 Mannitol dehydrogenase C-terminal domain APT56_02745 PF01425 Amidase APT56_02750 PF13560 Helix-turn-helix domain APT56_02755 PF00633 Helix-hairpin-helix motif APT56_02755 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_02755 PF10576 Iron-sulfur binding domain of endonuclease III APT56_02755 PF14815 NUDIX domain APT56_02760 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APT56_02760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_02765 PF00557 Metallopeptidase family M24 APT56_02770 PF01965 DJ-1/PfpI family APT56_02770 PF12833 Helix-turn-helix domain APT56_02775 PF03975 CheD chemotactic sensory transduction APT56_02780 PF02687 APT56_02780 APT56_02785 PF00005 ABC transporter APT56_02790 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_02795 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02800 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02805 PF00005 ABC transporter APT56_02810 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02820 PF13458 Periplasmic binding protein APT56_02825 PF01494 FAD binding domain APT56_02830 PF12831 FAD dependent oxidoreductase APT56_02835 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02840 PF01817 Chorismate mutase type II APT56_02845 PF13417 Glutathione S-transferase, N-terminal domain APT56_02845 PF14497 Glutathione S-transferase, C-terminal domain APT56_02850 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_02855 PF07883 Cupin domain APT56_02860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_02860 PF03466 LysR substrate binding domain APT56_02870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT56_02870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT56_02875 PF07690 Major Facilitator Superfamily APT56_02880 PF11943 APT56_02880 APT56_02885 PF02616 ScpA/B protein APT56_02890 PF02569 Pantoate-beta-alanine ligase APT56_02895 PF00196 Bacterial regulatory proteins, luxR family APT56_02900 PF04170 NlpE N-terminal domain APT56_02905 PF01478 Type IV leader peptidase family APT56_02905 PF06750 APT56_02905 APT56_02910 PF01121 Dephospho-CoA kinase APT56_02915 PF07072 Protein of unknown function (DUF1342) APT56_02920 PF13437 HlyD family secretion protein APT56_02920 PF13533 Biotin-lipoyl like APT56_02925 PF00873 AcrB/AcrD/AcrF family APT56_02930 PF00873 AcrB/AcrD/AcrF family APT56_02935 PF02321 Outer membrane efflux protein APT56_02940 PF03401 Tripartite tricarboxylate transporter family receptor APT56_02945 PF01266 FAD dependent oxidoreductase APT56_02950 PF07969 Amidohydrolase family APT56_02955 PF00440 Bacterial regulatory proteins, tetR family APT56_02965 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02970 PF00528 Binding-protein-dependent transport system inner membrane component APT56_02975 PF00005 ABC transporter APT56_02975 PF08402 TOBE domain APT56_02980 PF13416 Bacterial extracellular solute-binding protein APT56_02985 PF00293 NUDIX domain APT56_02985 PF02581 Thiamine monophosphate synthase/TENI APT56_02990 PF05673 Protein of unknown function (DUF815) APT56_02995 PF01960 ArgJ family APT56_03005 PF01047 MarR family APT56_03010 PF13458 Periplasmic binding protein APT56_03015 PF02653 APT56_03015 APT56_03020 PF02653 APT56_03020 APT56_03025 PF00005 ABC transporter APT56_03025 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_03030 PF00005 ABC transporter APT56_03035 PF00672 HAMP domain APT56_03035 PF07228 Stage II sporulation protein E (SpoIIE) APT56_03045 PF09345 APT56_03045 APT56_03050 PF00990 GGDEF domain APT56_03055 PF00563 EAL domain APT56_03055 PF00990 GGDEF domain APT56_03055 PF08447 PAS fold APT56_03055 PF13185 GAF domain APT56_03055 PF13426 PAS domain APT56_03060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT56_03065 PF00106 short chain dehydrogenase APT56_03070 PF00378 Enoyl-CoA hydratase/isomerase family APT56_03075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_03075 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_03075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_03080 PF00501 AMP-binding enzyme APT56_03080 PF13193 AMP-binding enzyme C-terminal domain APT56_03085 PF13279 Thioesterase-like superfamily APT56_03090 PF01042 Endoribonuclease L-PSP APT56_03095 PF12833 Helix-turn-helix domain APT56_03095 PF14525 APT56_03095 APT56_03100 PF13458 Periplasmic binding protein APT56_03105 PF01738 Dienelactone hydrolase family APT56_03110 PF00355 Rieske [2Fe-2S] domain APT56_03110 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_03115 PF00866 Ring hydroxylating beta subunit APT56_03120 PF00857 Isochorismatase family APT56_03125 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_03130 PF03961 APT56_03130 APT56_03135 PF01464 Transglycosylase SLT domain APT56_03140 PF00202 Aminotransferase class-III APT56_03145 PF02581 Thiamine monophosphate synthase/TENI APT56_03150 PF08543 Phosphomethylpyrimidine kinase APT56_03155 PF00301 Rubredoxin APT56_03160 PF02622 Uncharacterized ACR, COG1678 APT56_03165 PF03652 Uncharacterised protein family (UPF0081) APT56_03175 PF01979 Amidohydrolase family APT56_03180 PF01553 Acyltransferase APT56_03185 PF00005 ABC transporter APT56_03190 PF00528 Binding-protein-dependent transport system inner membrane component APT56_03195 PF00528 Binding-protein-dependent transport system inner membrane component APT56_03200 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_03205 PF00155 Aminotransferase class I and II APT56_03210 PF03737 Demethylmenaquinone methyltransferase APT56_03215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03215 PF03466 LysR substrate binding domain APT56_03220 PF00149 Calcineurin-like phosphoesterase APT56_03225 PF03739 APT56_03225 APT56_03230 PF00912 Transglycosylase APT56_03235 PF01488 Shikimate / quinate 5-dehydrogenase APT56_03235 PF08501 Shikimate dehydrogenase substrate binding domain APT56_03240 PF03544 Gram-negative bacterial TonB protein C-terminal APT56_03245 PF00005 ABC transporter APT56_03250 PF00528 Binding-protein-dependent transport system inner membrane component APT56_03255 PF13416 Bacterial extracellular solute-binding protein APT56_03260 PF00512 His Kinase A (phospho-acceptor) domain APT56_03260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_03260 PF08521 APT56_03260 APT56_03260 PF13531 Bacterial extracellular solute-binding protein APT56_03265 PF00072 Response regulator receiver domain APT56_03265 PF00486 Transcriptional regulatory protein, C terminal APT56_03270 PF00773 RNB domain APT56_03275 PF05728 Uncharacterised protein family (UPF0227) APT56_03280 PF01225 Mur ligase family, catalytic domain APT56_03280 PF02875 Mur ligase family, glutamate ligase domain APT56_03280 PF08245 Mur ligase middle domain APT56_03285 PF08534 Redoxin APT56_03290 PF01220 Dehydroquinase class II APT56_03295 PF00364 Biotin-requiring enzyme APT56_03300 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APT56_03300 PF02785 Biotin carboxylase C-terminal domain APT56_03300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_03305 PF06325 Ribosomal protein L11 methyltransferase (PrmA) APT56_03310 PF11906 APT56_03310 APT56_03310 PF13719 APT56_03310 APT56_03315 PF00294 pfkB family carbohydrate kinase APT56_03320 PF05433 APT56_03320 APT56_03325 PF00550 Phosphopantetheine attachment site APT56_03330 PF04914 DltD C-terminal region APT56_03340 PF03062 APT56_03340 APT56_03345 PF00501 AMP-binding enzyme APT56_03350 PF02325 APT56_03350 APT56_03360 PF00268 Ribonucleotide reductase, small chain APT56_03365 PF00317 Ribonucleotide reductase, all-alpha domain APT56_03365 PF02867 Ribonucleotide reductase, barrel domain APT56_03365 PF03477 ATP cone domain APT56_03370 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APT56_03375 PF01037 AsnC family APT56_03375 PF13412 Winged helix-turn-helix DNA-binding APT56_03380 PF03401 Tripartite tricarboxylate transporter family receptor APT56_03385 PF12697 Alpha/beta hydrolase family APT56_03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03390 PF03466 LysR substrate binding domain APT56_03400 PF07690 Major Facilitator Superfamily APT56_03405 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT56_03410 PF00583 Acetyltransferase (GNAT) family APT56_03410 PF13549 ATP-grasp domain APT56_03410 PF13607 Succinyl-CoA ligase like flavodoxin domain APT56_03415 PF00857 Isochorismatase family APT56_03420 PF00528 Binding-protein-dependent transport system inner membrane component APT56_03425 PF00005 ABC transporter APT56_03430 PF09084 NMT1/THI5 like APT56_03435 PF02230 Phospholipase/Carboxylesterase APT56_03440 PF04751 Protein of unknown function (DUF615) APT56_03445 PF01523 Putative modulator of DNA gyrase APT56_03450 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_03455 PF13458 Periplasmic binding protein APT56_03460 PF02653 APT56_03460 APT56_03465 PF02653 APT56_03465 APT56_03470 PF00005 ABC transporter APT56_03470 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_03475 PF00005 ABC transporter APT56_03480 PF00572 Ribosomal protein L13 APT56_03485 PF00380 Ribosomal protein S9/S16 APT56_03490 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT56_03490 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT56_03500 PF01521 Iron-sulphur cluster biosynthesis APT56_03505 PF03702 Uncharacterised protein family (UPF0075) APT56_03510 PF01551 Peptidase family M23 APT56_03515 PF00579 tRNA synthetases class I (W and Y) APT56_03515 PF01479 S4 domain APT56_03520 PF01161 Phosphatidylethanolamine-binding protein APT56_03525 PF01810 APT56_03525 APT56_03530 PF00464 Serine hydroxymethyltransferase APT56_03535 PF03477 ATP cone domain APT56_03540 PF01965 DJ-1/PfpI family APT56_03540 PF12833 Helix-turn-helix domain APT56_03545 PF00857 Isochorismatase family APT56_03550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT56_03550 PF01872 RibD C-terminal domain APT56_03560 PF11340 APT56_03560 APT56_03565 PF06798 APT56_03565 APT56_03565 PF08298 PrkA AAA domain APT56_03570 PF04285 APT56_03570 APT56_03575 PF04293 APT56_03575 APT56_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03585 PF03466 LysR substrate binding domain APT56_03590 PF14552 Tautomerase enzyme APT56_03595 PF03407 APT56_03595 APT56_03600 PF08445 FR47-like protein APT56_03605 PF01965 DJ-1/PfpI family APT56_03605 PF12833 Helix-turn-helix domain APT56_03610 PF01323 DSBA-like thioredoxin domain APT56_03620 PF03401 Tripartite tricarboxylate transporter family receptor APT56_03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03625 PF03466 LysR substrate binding domain APT56_03630 PF04107 Glutamate-cysteine ligase family 2(GCS2) APT56_03635 PF01734 Patatin-like phospholipase APT56_03645 PF05932 Tir chaperone protein (CesT) family APT56_03650 PF09392 Type III secretion needle MxiH like APT56_03655 PF08988 Protein of unknown function (DUF1895) APT56_03660 PF16693 APT56_03660 APT56_03665 PF00771 FHIPEP family APT56_03675 PF09474 APT56_03675 APT56_03685 PF07201 HrpJ-like domain APT56_03685 PF09059 TyeA APT56_03710 PF07720 Tetratricopeptide repeat APT56_03720 PF04888 APT56_03720 APT56_03725 PF14559 Tetratricopeptide repeat APT56_03735 PF17001 APT56_03735 APT56_03740 PF01514 Secretory protein of YscJ/FliF family APT56_03745 PF06578 APT56_03745 APT56_03750 PF06635 APT56_03750 APT56_03755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_03755 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT56_03760 PF07321 Type III secretion protein YscO APT56_03770 PF01052 Surface presentation of antigens (SPOA) APT56_03775 PF00813 APT56_03775 APT56_03780 PF01313 APT56_03780 APT56_03785 PF01311 APT56_03785 APT56_03790 PF01312 FlhB HrpN YscU SpaS Family APT56_03795 PF05932 Tir chaperone protein (CesT) family APT56_03800 PF00263 APT56_03800 APT56_03800 PF03958 Bacterial type II/III secretion system short domain APT56_03805 PF04542 Sigma-70 region 2 APT56_03805 PF08281 Sigma-70, region 4 APT56_03815 PF04392 ABC transporter substrate binding protein APT56_03820 PF07228 Stage II sporulation protein E (SpoIIE) APT56_03820 PF08269 Cache domain APT56_03825 PF07690 Major Facilitator Superfamily APT56_03830 PF00842 Alanine racemase, C-terminal domain APT56_03830 PF01168 Alanine racemase, N-terminal domain APT56_03835 PF13581 Histidine kinase-like ATPase domain APT56_03840 PF01740 STAS domain APT56_03855 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APT56_03855 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APT56_03860 PF03401 Tripartite tricarboxylate transporter family receptor APT56_03865 PF04391 APT56_03865 APT56_03870 PF02566 OsmC-like protein APT56_03875 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_03880 PF01464 Transglycosylase SLT domain APT56_03880 PF01476 LysM domain APT56_03885 PF00753 Metallo-beta-lactamase superfamily APT56_03885 PF16123 APT56_03885 APT56_03890 PF08241 Methyltransferase domain APT56_03895 PF00075 RNase H APT56_03900 PF16576 APT56_03900 APT56_03905 PF00873 AcrB/AcrD/AcrF family APT56_03910 PF00929 Exonuclease APT56_03920 PF02639 APT56_03920 APT56_03930 PF16868 APT56_03930 APT56_03935 PF03616 APT56_03935 APT56_03940 PF00583 Acetyltransferase (GNAT) family APT56_03945 PF00535 Glycosyl transferase family 2 APT56_03950 PF13231 APT56_03950 APT56_03955 PF04138 APT56_03955 APT56_03960 PF04794 YdjC-like protein APT56_03965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_03965 PF03466 LysR substrate binding domain APT56_03970 PF05232 APT56_03970 APT56_03975 PF00392 Bacterial regulatory proteins, gntR family APT56_03975 PF07729 FCD domain APT56_03980 PF02653 APT56_03980 APT56_03985 PF02653 APT56_03985 APT56_03990 PF13458 Periplasmic binding protein APT56_03995 PF00005 ABC transporter APT56_04000 PF00005 ABC transporter APT56_04000 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_04005 PF00701 Dihydrodipicolinate synthetase family APT56_04010 PF12146 Putative lysophospholipase APT56_04015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04015 PF03466 LysR substrate binding domain APT56_04020 PF03788 APT56_04020 APT56_04025 PF04172 APT56_04025 APT56_04030 PF01810 APT56_04030 APT56_04035 PF00892 EamA-like transporter family APT56_04040 PF00155 Aminotransferase class I and II APT56_04040 PF00392 Bacterial regulatory proteins, gntR family APT56_04045 PF04273 Putative phosphatase (DUF442) APT56_04050 PF00582 Universal stress protein family APT56_04055 PF00009 Elongation factor Tu GTP binding domain APT56_04055 PF00679 Elongation factor G C-terminus APT56_04055 PF03144 Elongation factor Tu domain 2 APT56_04055 PF03764 Elongation factor G, domain IV APT56_04055 PF14492 Elongation Factor G, domain II APT56_04060 PF00892 EamA-like transporter family APT56_04065 PF01037 AsnC family APT56_04065 PF13412 Winged helix-turn-helix DNA-binding APT56_04070 PF12697 Alpha/beta hydrolase family APT56_04075 PF04073 Aminoacyl-tRNA editing domain APT56_04080 PF00005 ABC transporter APT56_04085 PF01032 FecCD transport family APT56_04090 PF13174 Tetratricopeptide repeat APT56_04090 PF13432 Tetratricopeptide repeat APT56_04095 PF00691 OmpA family APT56_04100 PF04052 TolB amino-terminal domain APT56_04100 PF07676 WD40-like Beta Propeller Repeat APT56_04105 PF13103 TonB C terminal APT56_04110 PF02472 Biopolymer transport protein ExbD/TolR APT56_04115 PF01618 APT56_04115 APT56_04120 PF03061 Thioesterase superfamily APT56_04125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT56_04125 PF03129 Anticodon binding domain APT56_04125 PF04073 Aminoacyl-tRNA editing domain APT56_04130 PF00293 NUDIX domain APT56_04135 PF00072 Response regulator receiver domain APT56_04135 PF00486 Transcriptional regulatory protein, C terminal APT56_04140 PF00512 His Kinase A (phospho-acceptor) domain APT56_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_04140 PF08521 APT56_04140 APT56_04145 PF07331 APT56_04145 APT56_04150 PF01970 APT56_04150 APT56_04155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_04160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04160 PF03466 LysR substrate binding domain APT56_04165 PF02525 Flavodoxin-like fold APT56_04170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_04170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_04175 PF01019 Gamma-glutamyltranspeptidase APT56_04180 PF01970 APT56_04180 APT56_04185 PF07331 APT56_04185 APT56_04195 PF05164 Cell division protein ZapA APT56_04205 PF04402 Protein of unknown function (DUF541) APT56_04210 PF01790 APT56_04210 APT56_04215 PF00920 Dehydratase family APT56_04220 PF00034 Cytochrome c APT56_04225 PF01625 Peptide methionine sulfoxide reductase APT56_04230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_04230 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal APT56_04235 PF01037 AsnC family APT56_04235 PF13412 Winged helix-turn-helix DNA-binding APT56_04275 PF02201 SWIB/MDM2 domain APT56_04280 PF01546 Peptidase family M20/M25/M40 APT56_04280 PF07687 Peptidase dimerisation domain APT56_04285 PF01979 Amidohydrolase family APT56_04290 PF00005 ABC transporter APT56_04290 PF12848 ABC transporter APT56_04290 PF16326 APT56_04290 APT56_04300 PF02381 MraZ protein APT56_04305 PF01795 MraW methylase family APT56_04310 PF04999 APT56_04310 APT56_04315 PF00905 Penicillin binding protein transpeptidase domain APT56_04315 PF03717 Penicillin-binding Protein dimerisation domain APT56_04320 PF01225 Mur ligase family, catalytic domain APT56_04320 PF02875 Mur ligase family, glutamate ligase domain APT56_04320 PF08245 Mur ligase middle domain APT56_04325 PF00953 Glycosyl transferase family 4 APT56_04325 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APT56_04330 PF02875 Mur ligase family, glutamate ligase domain APT56_04330 PF08245 Mur ligase middle domain APT56_04335 PF01098 APT56_04335 APT56_04340 PF03033 Glycosyltransferase family 28 N-terminal domain APT56_04340 PF04101 Glycosyltransferase family 28 C-terminal domain APT56_04345 PF01225 Mur ligase family, catalytic domain APT56_04345 PF02875 Mur ligase family, glutamate ligase domain APT56_04345 PF08245 Mur ligase middle domain APT56_04350 PF01820 D-ala D-ala ligase N-terminus APT56_04350 PF07478 D-ala D-ala ligase C-terminus APT56_04355 PF03799 Cell division protein FtsQ APT56_04355 PF08478 POTRA domain, FtsQ-type APT56_04360 PF02491 SHS2 domain inserted in FTSA APT56_04360 PF14450 Cell division protein FtsA APT56_04365 PF00091 Tubulin/FtsZ family, GTPase domain APT56_04365 PF12327 FtsZ family, C-terminal domain APT56_04370 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APT56_04375 PF05258 APT56_04375 APT56_04380 PF01551 Peptidase family M23 APT56_04385 PF01043 SecA preprotein cross-linking domain APT56_04385 PF02810 SEC-C motif APT56_04385 PF07516 SecA Wing and Scaffold domain APT56_04385 PF07517 SecA DEAD-like domain APT56_04390 PF13468 Glyoxalase-like domain APT56_04395 PF00392 Bacterial regulatory proteins, gntR family APT56_04395 PF07729 FCD domain APT56_04400 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04405 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_04405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_04405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_04410 PF05995 Cysteine dioxygenase type I APT56_04415 PF00106 short chain dehydrogenase APT56_04420 PF01037 AsnC family APT56_04420 PF13412 Winged helix-turn-helix DNA-binding APT56_04425 PF04752 APT56_04425 APT56_04430 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP APT56_04435 PF00571 CBS domain APT56_04435 PF01769 Divalent cation transporter APT56_04435 PF03448 MgtE intracellular N domain APT56_04440 PF03061 Thioesterase superfamily APT56_04445 PF03601 APT56_04445 APT56_04450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04450 PF03466 LysR substrate binding domain APT56_04455 PF01546 Peptidase family M20/M25/M40 APT56_04455 PF07687 Peptidase dimerisation domain APT56_04460 PF00501 AMP-binding enzyme APT56_04460 PF13193 AMP-binding enzyme C-terminal domain APT56_04465 PF00459 Inositol monophosphatase family APT56_04470 PF01266 FAD dependent oxidoreductase APT56_04470 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APT56_04475 PF01055 Glycosyl hydrolases family 31 APT56_04480 PF00005 ABC transporter APT56_04480 PF09383 NIL domain APT56_04485 PF00528 Binding-protein-dependent transport system inner membrane component APT56_04490 PF03180 NLPA lipoprotein APT56_04500 PF01042 Endoribonuclease L-PSP APT56_04510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_04510 PF00672 HAMP domain APT56_04510 PF02203 Tar ligand binding domain homologue APT56_04515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04515 PF03466 LysR substrate binding domain APT56_04525 PF01475 Ferric uptake regulator family APT56_04530 PF02311 AraC-like ligand binding domain APT56_04530 PF12833 Helix-turn-helix domain APT56_04535 PF12697 Alpha/beta hydrolase family APT56_04540 PF03692 APT56_04540 APT56_04545 PF03352 Methyladenine glycosylase APT56_04550 PF00884 Sulfatase APT56_04555 PF05170 APT56_04555 APT56_04560 PF00990 GGDEF domain APT56_04560 PF02743 Cache domain APT56_04565 PF00440 Bacterial regulatory proteins, tetR family APT56_04570 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_04580 PF00149 Calcineurin-like phosphoesterase APT56_04585 PF02525 Flavodoxin-like fold APT56_04590 PF13419 Haloacid dehalogenase-like hydrolase APT56_04595 PF00691 OmpA family APT56_04595 PF13441 APT56_04595 APT56_04600 PF01329 Pterin 4 alpha carbinolamine dehydratase APT56_04605 PF12802 MarR family APT56_04615 PF01494 FAD binding domain APT56_04625 PF00483 Nucleotidyl transferase APT56_04630 PF01636 Phosphotransferase enzyme family APT56_04635 PF04453 Organic solvent tolerance protein APT56_04640 PF00639 PPIC-type PPIASE domain APT56_04640 PF09312 SurA N-terminal domain APT56_04640 PF13616 PPIC-type PPIASE domain APT56_04645 PF00398 Ribosomal RNA adenine dimethylase APT56_04650 PF02595 Glycerate kinase family APT56_04655 PF00224 Pyruvate kinase, barrel domain APT56_04655 PF02887 Pyruvate kinase, alpha/beta domain APT56_04660 PF07670 Nucleoside recognition APT56_04670 PF01327 Polypeptide deformylase APT56_04675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_04680 PF00266 Aminotransferase class-V APT56_04685 PF01863 Protein of unknown function DUF45 APT56_04690 PF01553 Acyltransferase APT56_04695 PF13242 HAD-hyrolase-like APT56_04700 PF02092 APT56_04700 APT56_04700 PF05746 DALR anticodon binding domain APT56_04705 PF02091 Glycyl-tRNA synthetase alpha subunit APT56_04710 PF00378 Enoyl-CoA hydratase/isomerase family APT56_04715 PF05681 APT56_04715 APT56_04715 PF05683 Fumarase C-terminus APT56_04720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_04720 PF08447 PAS fold APT56_04725 PF02515 CoA-transferase family III APT56_04730 PF01575 MaoC like domain APT56_04730 PF13452 N-terminal half of MaoC dehydratase APT56_04735 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04740 PF03466 LysR substrate binding domain APT56_04745 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04750 PF03797 Autotransporter beta-domain APT56_04750 PF12951 APT56_04750 APT56_04755 PF03060 Nitronate monooxygenase APT56_04760 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04765 PF00501 AMP-binding enzyme APT56_04765 PF13193 AMP-binding enzyme C-terminal domain APT56_04770 PF02803 Thiolase, C-terminal domain APT56_04775 PF01796 APT56_04775 APT56_04775 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) APT56_04780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_04780 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_04780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_04785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_04785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_04790 PF00378 Enoyl-CoA hydratase/isomerase family APT56_04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04795 PF03466 LysR substrate binding domain APT56_04800 PF13452 N-terminal half of MaoC dehydratase APT56_04805 PF02515 CoA-transferase family III APT56_04810 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_04815 PF00294 pfkB family carbohydrate kinase APT56_04820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APT56_04825 PF01743 Poly A polymerase head domain APT56_04825 PF12626 Polymerase A arginine-rich C-terminus APT56_04825 PF12627 Probable RNA and SrmB- binding site of polymerase A APT56_04830 PF12710 haloacid dehalogenase-like hydrolase APT56_04835 PF00308 Bacterial dnaA protein APT56_04840 PF00586 AIR synthase related protein, N-terminal domain APT56_04840 PF02769 AIR synthase related protein, C-terminal domain APT56_04850 PF01715 IPP transferase APT56_04855 PF01119 DNA mismatch repair protein, C-terminal domain APT56_04855 PF08676 MutL C terminal dimerisation domain APT56_04855 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_04860 PF09335 APT56_04860 APT56_04865 PF00593 TonB dependent receptor APT56_04865 PF07715 TonB-dependent Receptor Plug Domain APT56_04870 PF01520 N-acetylmuramoyl-L-alanine amidase APT56_04870 PF11741 AMIN domain APT56_04875 PF00206 Lyase APT56_04875 PF10415 Fumarase C C-terminus APT56_04880 PF03547 APT56_04880 APT56_04885 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04890 PF03466 LysR substrate binding domain APT56_04895 PF01019 Gamma-glutamyltranspeptidase APT56_04900 PF13520 Amino acid permease APT56_04905 PF02515 CoA-transferase family III APT56_04910 PF03401 Tripartite tricarboxylate transporter family receptor APT56_04915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_04915 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04920 PF03466 LysR substrate binding domain APT56_04925 PF00551 Formyl transferase APT56_04925 PF13740 ACT domain APT56_04930 PF01266 FAD dependent oxidoreductase APT56_04935 PF01613 Flavin reductase like domain APT56_04940 PF01243 Pyridoxamine 5'-phosphate oxidase APT56_04940 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APT56_04945 PF04752 APT56_04945 APT56_04950 PF07690 Major Facilitator Superfamily APT56_04955 PF16576 APT56_04955 APT56_04960 PF00005 ABC transporter APT56_04960 PF02687 APT56_04960 APT56_04960 PF12704 MacB-like periplasmic core domain APT56_04965 PF02321 Outer membrane efflux protein APT56_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_04970 PF03466 LysR substrate binding domain APT56_04980 PF00005 ABC transporter APT56_04985 PF02687 APT56_04985 APT56_04985 PF12704 MacB-like periplasmic core domain APT56_04990 PF02321 Outer membrane efflux protein APT56_04995 PF13437 HlyD family secretion protein APT56_04995 PF13533 Biotin-lipoyl like APT56_05000 PF00899 ThiF family APT56_05005 PF00355 Rieske [2Fe-2S] domain APT56_05010 PF00866 Ring hydroxylating beta subunit APT56_05015 PF00355 Rieske [2Fe-2S] domain APT56_05015 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_05020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05020 PF03466 LysR substrate binding domain APT56_05025 PF01063 Aminotransferase class IV APT56_05030 PF00425 chorismate binding enzyme APT56_05035 PF00005 ABC transporter APT56_05040 PF01614 Bacterial transcriptional regulator APT56_05040 PF09339 IclR helix-turn-helix domain APT56_05045 PF01081 KDPG and KHG aldolase APT56_05050 PF00294 pfkB family carbohydrate kinase APT56_05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05055 PF03466 LysR substrate binding domain APT56_05060 PF00535 Glycosyl transferase family 2 APT56_05065 PF00005 ABC transporter APT56_05065 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_05070 PF00005 ABC transporter APT56_05070 PF02653 APT56_05070 APT56_05070 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_05075 PF02653 APT56_05075 APT56_05080 PF13458 Periplasmic binding protein APT56_05085 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_05090 PF04199 Putative cyclase APT56_05095 PF00106 short chain dehydrogenase APT56_05095 PF01796 APT56_05095 APT56_05095 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) APT56_05105 PF00501 AMP-binding enzyme APT56_05105 PF13193 AMP-binding enzyme C-terminal domain APT56_05110 PF00866 Ring hydroxylating beta subunit APT56_05115 PF00355 Rieske [2Fe-2S] domain APT56_05115 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_05120 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_05120 PF00175 Oxidoreductase NAD-binding domain APT56_05125 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APT56_05130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_05135 PF12802 MarR family APT56_05140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_05145 PF00528 Binding-protein-dependent transport system inner membrane component APT56_05150 PF00528 Binding-protein-dependent transport system inner membrane component APT56_05155 PF00005 ABC transporter APT56_05155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_05160 PF00005 ABC transporter APT56_05160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_05170 PF12833 Helix-turn-helix domain APT56_05175 PF00892 EamA-like transporter family APT56_05180 PF02522 Aminoglycoside 3-N-acetyltransferase APT56_05185 PF00005 ABC transporter APT56_05185 PF12848 ABC transporter APT56_05195 PF00857 Isochorismatase family APT56_05200 PF05433 APT56_05200 APT56_05205 PF03776 Septum formation topological specificity factor MinE APT56_05210 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT56_05215 PF03775 Septum formation inhibitor MinC, C-terminal domain APT56_05215 PF05209 Septum formation inhibitor MinC, N-terminal domain APT56_05220 PF01614 Bacterial transcriptional regulator APT56_05220 PF09339 IclR helix-turn-helix domain APT56_05230 PF02515 CoA-transferase family III APT56_05235 PF03401 Tripartite tricarboxylate transporter family receptor APT56_05240 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT56_05240 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APT56_05245 PF01654 APT56_05245 APT56_05250 PF02322 APT56_05250 APT56_05255 PF00270 DEAD/DEAH box helicase APT56_05255 PF00271 Helicase conserved C-terminal domain APT56_05255 PF00570 HRDC domain APT56_05255 PF09382 RQC domain APT56_05255 PF16124 APT56_05255 APT56_05265 PF00072 Response regulator receiver domain APT56_05265 PF00486 Transcriptional regulatory protein, C terminal APT56_05270 PF00672 HAMP domain APT56_05270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_05275 PF05491 Holliday junction DNA helicase ruvB C-terminus APT56_05275 PF05496 Holliday junction DNA helicase ruvB N-terminus APT56_05280 PF00291 Pyridoxal-phosphate dependent enzyme APT56_05285 PF01370 NAD dependent epimerase/dehydratase family APT56_05290 PF01330 RuvA N terminal domain APT56_05290 PF07499 RuvA, C-terminal domain APT56_05290 PF14520 Helix-hairpin-helix domain APT56_05295 PF02075 Crossover junction endodeoxyribonuclease RuvC APT56_05300 PF01808 AICARFT/IMPCHase bienzyme APT56_05300 PF02142 MGS-like domain APT56_05305 PF02954 Bacterial regulatory protein, Fis family APT56_05310 PF01207 Dihydrouridine synthase (Dus) APT56_05315 PF01494 FAD binding domain APT56_05325 PF00557 Metallopeptidase family M24 APT56_05325 PF05195 Aminopeptidase P, N-terminal domain APT56_05330 PF01699 Sodium/calcium exchanger protein APT56_05340 PF00122 E1-E2 ATPase APT56_05340 PF00689 Cation transporting ATPase, C-terminus APT56_05340 PF00690 Cation transporter/ATPase, N-terminus APT56_05340 PF00702 haloacid dehalogenase-like hydrolase APT56_05345 PF13609 Gram-negative porin APT56_05350 PF09678 APT56_05350 APT56_05355 PF00483 Nucleotidyl transferase APT56_05360 PF01435 Peptidase family M48 APT56_05365 PF00561 alpha/beta hydrolase fold APT56_05370 PF13474 SnoaL-like domain APT56_05375 PF10276 Zinc-finger domain APT56_05380 PF01063 Aminotransferase class IV APT56_05385 PF03591 APT56_05385 APT56_05390 PF05437 APT56_05390 APT56_05395 PF01494 FAD binding domain APT56_05400 PF07690 Major Facilitator Superfamily APT56_05405 PF00593 TonB dependent receptor APT56_05405 PF07715 TonB-dependent Receptor Plug Domain APT56_05410 PF12833 Helix-turn-helix domain APT56_05415 PF00270 DEAD/DEAH box helicase APT56_05415 PF00271 Helicase conserved C-terminal domain APT56_05420 PF00085 Thioredoxin APT56_05425 PF07264 Etoposide-induced protein 2 APT56_05430 PF00994 Probable molybdopterin binding domain APT56_05435 PF01614 Bacterial transcriptional regulator APT56_05435 PF09339 IclR helix-turn-helix domain APT56_05440 PF03401 Tripartite tricarboxylate transporter family receptor APT56_05445 PF09361 APT56_05445 APT56_05450 PF01180 Dihydroorotate dehydrogenase APT56_05455 PF04376 APT56_05455 APT56_05455 PF04377 APT56_05455 APT56_05460 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APT56_05465 PF00293 NUDIX domain APT56_05465 PF14803 Nudix N-terminal APT56_05470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05470 PF03466 LysR substrate binding domain APT56_05475 PF07681 APT56_05475 APT56_05480 PF12680 SnoaL-like domain APT56_05485 PF11161 APT56_05485 APT56_05510 PF02627 Carboxymuconolactone decarboxylase family APT56_05515 PF00155 Aminotransferase class I and II APT56_05515 PF00392 Bacterial regulatory proteins, gntR family APT56_05520 PF00583 Acetyltransferase (GNAT) family APT56_05525 PF02525 Flavodoxin-like fold APT56_05540 PF01565 FAD binding domain APT56_05540 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APT56_05545 PF01113 Dihydrodipicolinate reductase, N-terminus APT56_05545 PF05173 Dihydrodipicolinate reductase, C-terminus APT56_05550 PF04355 SmpA / OmlA family APT56_05555 PF01475 Ferric uptake regulator family APT56_05560 PF02463 RecF/RecN/SMC N terminal domain APT56_05565 PF01513 ATP-NAD kinase APT56_05570 PF01628 HrcA protein C terminal domain APT56_05570 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding APT56_05575 PF00762 Ferrochelatase APT56_05585 PF01025 GrpE APT56_05595 PF00012 Hsp70 protein APT56_05600 PF00226 DnaJ domain APT56_05600 PF00684 DnaJ central domain APT56_05600 PF01556 DnaJ C terminal domain APT56_05605 PF13663 APT56_05605 APT56_05610 PF00675 Insulinase (Peptidase family M16) APT56_05610 PF05193 Peptidase M16 inactive domain APT56_05615 PF13302 Acetyltransferase (GNAT) domain APT56_05625 PF00583 Acetyltransferase (GNAT) family APT56_05630 PF05762 VWA domain containing CoxE-like protein APT56_05635 PF00004 ATPase family associated with various cellular activities (AAA) APT56_05640 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_05645 PF00034 Cytochrome c APT56_05650 PF08897 APT56_05650 APT56_05655 PF00180 Isocitrate/isopropylmalate dehydrogenase APT56_05660 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT56_05665 PF04932 APT56_05665 APT56_05670 PF00701 Dihydrodipicolinate synthetase family APT56_05680 PF09694 APT56_05680 APT56_05685 PF00072 Response regulator receiver domain APT56_05685 PF00486 Transcriptional regulatory protein, C terminal APT56_05690 PF00512 His Kinase A (phospho-acceptor) domain APT56_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_05690 PF02702 Osmosensitive K+ channel His kinase sensor domain APT56_05690 PF13492 GAF domain APT56_05690 PF13493 Domain of unknown function (DUF4118) APT56_05695 PF02669 APT56_05695 APT56_05700 PF00122 E1-E2 ATPase APT56_05700 PF00702 haloacid dehalogenase-like hydrolase APT56_05705 PF03814 APT56_05705 APT56_05710 PF09604 APT56_05710 APT56_05715 PF13937 APT56_05715 APT56_05720 PF00474 Sodium:solute symporter family APT56_05725 PF00893 Small Multidrug Resistance protein APT56_05730 PF01713 Smr domain APT56_05735 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_05740 PF01580 FtsK/SpoIIIE family APT56_05740 PF09397 Ftsk gamma domain APT56_05740 PF13491 APT56_05740 APT56_05745 PF03548 Outer membrane lipoprotein carrier protein LolA APT56_05750 PF01042 Endoribonuclease L-PSP APT56_05755 PF07969 Amidohydrolase family APT56_05760 PF01380 SIS domain APT56_05760 PF01418 Helix-turn-helix domain, rpiR family APT56_05765 PF00005 ABC transporter APT56_05765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_05770 PF00005 ABC transporter APT56_05770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_05775 PF00528 Binding-protein-dependent transport system inner membrane component APT56_05775 PF12911 APT56_05775 APT56_05780 PF00528 Binding-protein-dependent transport system inner membrane component APT56_05785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_05790 PF01168 Alanine racemase, N-terminal domain APT56_05790 PF14031 Putative serine dehydratase domain APT56_05795 PF00795 Carbon-nitrogen hydrolase APT56_05800 PF05496 Holliday junction DNA helicase ruvB N-terminus APT56_05800 PF12002 MgsA AAA+ ATPase C terminal APT56_05800 PF16193 APT56_05800 APT56_05805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT56_05805 PF02403 Seryl-tRNA synthetase N-terminal domain APT56_05810 PF12778 APT56_05810 APT56_05815 PF04266 ASCH domain APT56_05825 PF07969 Amidohydrolase family APT56_05830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05830 PF03466 LysR substrate binding domain APT56_05835 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_05835 PF13378 Enolase C-terminal domain-like APT56_05840 PF00701 Dihydrodipicolinate synthetase family APT56_05845 PF03401 Tripartite tricarboxylate transporter family receptor APT56_05855 PF00999 Sodium/hydrogen exchanger family APT56_05860 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_05865 PF03883 APT56_05865 APT56_05870 PF12805 APT56_05870 APT56_05870 PF13515 APT56_05870 APT56_05875 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_05875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_05875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_05880 PF10369 Small subunit of acetolactate synthase APT56_05880 PF13710 ACT domain APT56_05885 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APT56_05885 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain APT56_05890 PF01066 CDP-alcohol phosphatidyltransferase APT56_05900 PF00312 Ribosomal protein S15 APT56_05905 PF00013 KH domain APT56_05905 PF00575 S1 RNA binding domain APT56_05905 PF01138 3' exoribonuclease family, domain 1 APT56_05905 PF03725 3' exoribonuclease family, domain 2 APT56_05905 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APT56_05915 PF00291 Pyridoxal-phosphate dependent enzyme APT56_05920 PF13470 APT56_05920 APT56_05925 PF13527 Acetyltransferase (GNAT) domain APT56_05965 PF00795 Carbon-nitrogen hydrolase APT56_05970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05970 PF03466 LysR substrate binding domain APT56_05975 PF13424 Tetratricopeptide repeat APT56_05975 PF13432 Tetratricopeptide repeat APT56_05975 PF14559 Tetratricopeptide repeat APT56_05980 PF06271 APT56_05980 APT56_05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_05985 PF03466 LysR substrate binding domain APT56_05990 PF02515 CoA-transferase family III APT56_05995 PF03401 Tripartite tricarboxylate transporter family receptor APT56_06000 PF00682 HMGL-like APT56_06015 PF00107 Zinc-binding dehydrogenase APT56_06015 PF08240 Alcohol dehydrogenase GroES-like domain APT56_06020 PF00121 Triosephosphate isomerase APT56_06025 PF03840 Preprotein translocase SecG subunit APT56_06040 PF05787 Bacterial protein of unknown function (DUF839) APT56_06050 PF00881 Nitroreductase family APT56_06065 PF11784 APT56_06065 APT56_06065 PF13086 AAA domain APT56_06065 PF13087 AAA domain APT56_06065 PF13195 APT56_06065 APT56_06070 PF03724 META domain APT56_06070 PF14302 APT56_06070 APT56_06080 PF00593 TonB dependent receptor APT56_06090 PF04542 Sigma-70 region 2 APT56_06090 PF08281 Sigma-70, region 4 APT56_06095 PF04773 FecR protein APT56_06095 PF16220 APT56_06095 APT56_06100 PF00593 TonB dependent receptor APT56_06100 PF07660 Secretin and TonB N terminus short domain APT56_06100 PF07715 TonB-dependent Receptor Plug Domain APT56_06105 PF04542 Sigma-70 region 2 APT56_06105 PF08281 Sigma-70, region 4 APT56_06110 PF04773 FecR protein APT56_06110 PF16220 APT56_06110 APT56_06115 PF00593 TonB dependent receptor APT56_06115 PF07715 TonB-dependent Receptor Plug Domain APT56_06120 PF14081 APT56_06120 APT56_06130 PF04542 Sigma-70 region 2 APT56_06130 PF08281 Sigma-70, region 4 APT56_06135 PF04773 FecR protein APT56_06135 PF16220 APT56_06135 APT56_06140 PF00593 TonB dependent receptor APT56_06140 PF07660 Secretin and TonB N terminus short domain APT56_06140 PF07715 TonB-dependent Receptor Plug Domain APT56_06145 PF13531 Bacterial extracellular solute-binding protein APT56_06150 PF00512 His Kinase A (phospho-acceptor) domain APT56_06150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_06150 PF08521 APT56_06150 APT56_06155 PF00072 Response regulator receiver domain APT56_06155 PF00486 Transcriptional regulatory protein, C terminal APT56_06160 PF00082 Subtilase family APT56_06160 PF03797 Autotransporter beta-domain APT56_06160 PF12951 APT56_06160 APT56_06165 PF03600 Citrate transporter APT56_06170 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_06175 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_06190 PF00313 'Cold-shock' DNA-binding domain APT56_06200 PF06094 AIG2-like family APT56_06205 PF06906 APT56_06205 APT56_06210 PF05661 APT56_06210 APT56_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06215 PF03466 LysR substrate binding domain APT56_06220 PF13354 Beta-lactamase enzyme family APT56_06225 PF00593 TonB dependent receptor APT56_06225 PF07715 TonB-dependent Receptor Plug Domain APT56_06230 PF01037 AsnC family APT56_06230 PF13412 Winged helix-turn-helix DNA-binding APT56_06240 PF00528 Binding-protein-dependent transport system inner membrane component APT56_06245 PF00528 Binding-protein-dependent transport system inner membrane component APT56_06250 PF00005 ABC transporter APT56_06250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_06255 PF00392 Bacterial regulatory proteins, gntR family APT56_06255 PF07729 FCD domain APT56_06260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_06265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_06270 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase APT56_06275 PF02321 Outer membrane efflux protein APT56_06280 PF00873 AcrB/AcrD/AcrF family APT56_06285 PF16576 APT56_06285 APT56_06290 PF00440 Bacterial regulatory proteins, tetR family APT56_06290 PF13977 Bacterial transcriptional repressor APT56_06295 PF02028 BCCT family transporter APT56_06300 PF16576 APT56_06300 APT56_06305 PF00873 AcrB/AcrD/AcrF family APT56_06310 PF02321 Outer membrane efflux protein APT56_06315 PF03551 Transcriptional regulator PadR-like family APT56_06320 PF02321 Outer membrane efflux protein APT56_06325 PF00873 AcrB/AcrD/AcrF family APT56_06330 PF16576 APT56_06330 APT56_06335 PF00440 Bacterial regulatory proteins, tetR family APT56_06335 PF08361 MAATS-type transcriptional repressor, C-terminal region APT56_06340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06340 PF03466 LysR substrate binding domain APT56_06345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_06350 PF01019 Gamma-glutamyltranspeptidase APT56_06355 PF00781 Diacylglycerol kinase catalytic domain APT56_06360 PF00149 Calcineurin-like phosphoesterase APT56_06365 PF01569 PAP2 superfamily APT56_06370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_06375 PF03061 Thioesterase superfamily APT56_06380 PF00440 Bacterial regulatory proteins, tetR family APT56_06385 PF13609 Gram-negative porin APT56_06390 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APT56_06395 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT56_06400 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APT56_06405 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT56_06410 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin APT56_06415 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APT56_06415 PF10531 SLBB domain APT56_06415 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APT56_06420 PF00384 Molybdopterin oxidoreductase APT56_06420 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APT56_06420 PF13510 2Fe-2S iron-sulfur cluster binding domain APT56_06425 PF00146 NADH dehydrogenase APT56_06430 PF12838 4Fe-4S dicluster domain APT56_06435 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APT56_06440 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT56_06445 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT56_06445 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT56_06450 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT56_06450 PF01059 APT56_06450 APT56_06455 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT56_06460 PF10993 APT56_06460 APT56_06465 PF00593 TonB dependent receptor APT56_06465 PF07715 TonB-dependent Receptor Plug Domain APT56_06470 PF12710 haloacid dehalogenase-like hydrolase APT56_06470 PF13284 APT56_06470 APT56_06475 PF00270 DEAD/DEAH box helicase APT56_06475 PF00271 Helicase conserved C-terminal domain APT56_06475 PF02559 CarD-like/TRCF domain APT56_06475 PF03461 TRCF domain APT56_06480 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APT56_06485 PF02542 YgbB family APT56_06490 PF14247 APT56_06490 APT56_06495 PF02627 Carboxymuconolactone decarboxylase family APT56_06500 PF00578 AhpC/TSA family APT56_06505 PF00512 His Kinase A (phospho-acceptor) domain APT56_06505 PF00672 HAMP domain APT56_06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_06505 PF16524 APT56_06505 APT56_06510 PF00072 Response regulator receiver domain APT56_06510 PF00486 Transcriptional regulatory protein, C terminal APT56_06515 PF00583 Acetyltransferase (GNAT) family APT56_06515 PF00814 Glycoprotease family APT56_06520 PF03167 Uracil DNA glycosylase superfamily APT56_06525 PF07690 Major Facilitator Superfamily APT56_06530 PF02463 RecF/RecN/SMC N terminal domain APT56_06530 PF06470 SMC proteins Flexible Hinge Domain APT56_06535 PF04354 ZipA, C-terminal FtsZ-binding domain APT56_06540 PF00533 BRCA1 C Terminus (BRCT) domain APT56_06540 PF01653 NAD-dependent DNA ligase adenylation domain APT56_06540 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APT56_06540 PF03120 NAD-dependent DNA ligase OB-fold domain APT56_06540 PF12826 Helix-hairpin-helix motif APT56_06540 PF14520 Helix-hairpin-helix domain APT56_06545 PF13616 PPIC-type PPIASE domain APT56_06555 PF04279 APT56_06555 APT56_06560 PF01641 SelR domain APT56_06565 PF00005 ABC transporter APT56_06570 PF02361 Cobalt transport protein APT56_06575 PF02632 BioY family APT56_06580 PF13458 Periplasmic binding protein APT56_06585 PF02653 APT56_06585 APT56_06590 PF00005 ABC transporter APT56_06590 PF02653 APT56_06590 APT56_06590 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_06595 PF00005 ABC transporter APT56_06600 PF04266 ASCH domain APT56_06605 PF04185 Phosphoesterase family APT56_06605 PF05506 APT56_06605 APT56_06610 PF01063 Aminotransferase class IV APT56_06615 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APT56_06620 PF02653 APT56_06620 APT56_06625 PF02653 APT56_06625 APT56_06630 PF13458 Periplasmic binding protein APT56_06635 PF00005 ABC transporter APT56_06640 PF00005 ABC transporter APT56_06640 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_06645 PF00633 Helix-hairpin-helix motif APT56_06645 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_06645 PF10576 Iron-sulfur binding domain of endonuclease III APT56_06650 PF04060 Putative Fe-S cluster APT56_06650 PF14697 4Fe-4S dicluster domain APT56_06655 PF06850 APT56_06655 APT56_06660 PF00175 Oxidoreductase NAD-binding domain APT56_06665 PF00037 4Fe-4S binding domain APT56_06665 PF11953 Domain of unknown function (DUF3470) APT56_06670 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APT56_06675 PF01042 Endoribonuclease L-PSP APT56_06680 PF03358 NADPH-dependent FMN reductase APT56_06685 PF06167 Glucose-regulated metallo-peptidase M90 APT56_06690 PF02824 TGS domain APT56_06690 PF04607 Region found in RelA / SpoT proteins APT56_06690 PF13291 ACT domain APT56_06690 PF13328 HD domain APT56_06695 PF00083 Sugar (and other) transporter APT56_06700 PF01546 Peptidase family M20/M25/M40 APT56_06700 PF07687 Peptidase dimerisation domain APT56_06705 PF00291 Pyridoxal-phosphate dependent enzyme APT56_06710 PF00290 Tryptophan synthase alpha chain APT56_06715 PF01039 Carboxyl transferase domain APT56_06720 PF09411 Lipid A 3-O-deacylase (PagL) APT56_06725 PF00575 S1 RNA binding domain APT56_06725 PF10150 Ribonuclease E/G family APT56_06730 PF00849 RNA pseudouridylate synthase APT56_06730 PF01479 S4 domain APT56_06735 PF13419 Haloacid dehalogenase-like hydrolase APT56_06740 PF00174 Oxidoreductase molybdopterin binding domain APT56_06745 PF01794 APT56_06745 APT56_06750 PF01471 Putative peptidoglycan binding domain APT56_06750 PF01510 N-acetylmuramoyl-L-alanine amidase APT56_06755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT56_06760 PF02545 Maf-like protein APT56_06765 PF02620 APT56_06765 APT56_06770 PF01783 Ribosomal L32p protein family APT56_06775 PF02504 Fatty acid synthesis protein APT56_06780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT56_06780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT56_06785 PF00698 Acyl transferase domain APT56_06790 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_06795 PF00550 Phosphopantetheine attachment site APT56_06800 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_06800 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_06810 PF04542 Sigma-70 region 2 APT56_06810 PF08281 Sigma-70, region 4 APT56_06815 PF03872 Anti sigma-E protein RseA, N-terminal domain APT56_06820 PF03888 MucB/RseB family APT56_06820 PF17188 APT56_06820 APT56_06825 PF13180 PDZ domain APT56_06825 PF13365 Trypsin-like peptidase domain APT56_06830 PF00009 Elongation factor Tu GTP binding domain APT56_06830 PF00679 Elongation factor G C-terminus APT56_06830 PF03144 Elongation factor Tu domain 2 APT56_06830 PF06421 GTP-binding protein LepA C-terminus APT56_06835 PF00717 Peptidase S24-like APT56_06835 PF10502 Signal peptidase, peptidase S26 APT56_06840 PF00035 Double-stranded RNA binding motif APT56_06840 PF14622 Ribonuclease-III-like APT56_06845 PF01926 50S ribosome-binding GTPase APT56_06845 PF07650 KH domain APT56_06850 PF02565 Recombination protein O C terminal APT56_06850 PF11967 Recombination protein O N terminal APT56_06855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06855 PF03466 LysR substrate binding domain APT56_06860 PF00291 Pyridoxal-phosphate dependent enzyme APT56_06865 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APT56_06870 PF03401 Tripartite tricarboxylate transporter family receptor APT56_06875 PF07690 Major Facilitator Superfamily APT56_06880 PF00248 Aldo/keto reductase family APT56_06885 PF01027 Inhibitor of apoptosis-promoting Bax1 APT56_06895 PF04364 DNA polymerase III chi subunit, HolC APT56_06900 PF00883 Cytosol aminopeptidase family, catalytic domain APT56_06900 PF02789 Cytosol aminopeptidase family, N-terminal domain APT56_06905 PF03739 APT56_06905 APT56_06910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06910 PF03466 LysR substrate binding domain APT56_06915 PF13458 Periplasmic binding protein APT56_06920 PF00171 Aldehyde dehydrogenase family APT56_06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_06925 PF03466 LysR substrate binding domain APT56_06930 PF10087 APT56_06930 APT56_06935 PF00877 NlpC/P60 family APT56_06940 PF00501 AMP-binding enzyme APT56_06940 PF13193 AMP-binding enzyme C-terminal domain APT56_06940 PF16177 APT56_06940 APT56_06945 PF03928 Domain of unknown function (DUF336) APT56_06950 PF11700 APT56_06950 APT56_06955 PF00501 AMP-binding enzyme APT56_06955 PF13193 AMP-binding enzyme C-terminal domain APT56_06955 PF16177 APT56_06955 APT56_06960 PF00892 EamA-like transporter family APT56_06965 PF01212 Beta-eliminating lyase APT56_06970 PF03992 Antibiotic biosynthesis monooxygenase APT56_06980 PF13460 NADH(P)-binding APT56_06985 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase APT56_06985 PF13450 NAD(P)-binding Rossmann-like domain APT56_06990 PF13279 Thioesterase-like superfamily APT56_06995 PF01144 Coenzyme A transferase APT56_07005 PF13673 Acetyltransferase (GNAT) domain APT56_07010 PF01380 SIS domain APT56_07010 PF01418 Helix-turn-helix domain, rpiR family APT56_07015 PF01112 Asparaginase APT56_07020 PF00005 ABC transporter APT56_07020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_07025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_07030 PF00528 Binding-protein-dependent transport system inner membrane component APT56_07035 PF00528 Binding-protein-dependent transport system inner membrane component APT56_07035 PF12911 APT56_07035 APT56_07040 PF03576 Peptidase family S58 APT56_07045 PF04951 D-aminopeptidase APT56_07050 PF00557 Metallopeptidase family M24 APT56_07050 PF01321 Creatinase/Prolidase N-terminal domain APT56_07050 PF16188 APT56_07050 APT56_07050 PF16189 APT56_07050 APT56_07060 PF00117 Glutamine amidotransferase class-I APT56_07060 PF06418 CTP synthase N-terminus APT56_07065 PF07045 Protein of unknown function (DUF1330) APT56_07070 PF00113 Enolase, C-terminal TIM barrel domain APT56_07070 PF03952 Enolase, N-terminal domain APT56_07075 PF04977 Septum formation initiator APT56_07085 PF01430 Hsp33 protein APT56_07090 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_07095 PF00501 AMP-binding enzyme APT56_07095 PF13193 AMP-binding enzyme C-terminal domain APT56_07100 PF12850 Calcineurin-like phosphoesterase superfamily domain APT56_07110 PF09935 APT56_07110 APT56_07115 PF06271 APT56_07115 APT56_07125 PF01170 Putative RNA methylase family UPF0020 APT56_07125 PF02926 THUMP domain APT56_07130 PF03653 APT56_07130 APT56_07135 PF03972 MmgE/PrpD family APT56_07140 PF00285 Citrate synthase APT56_07145 PF13714 Phosphoenolpyruvate phosphomutase APT56_07150 PF00056 lactate/malate dehydrogenase, NAD binding domain APT56_07150 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APT56_07155 PF00392 Bacterial regulatory proteins, gntR family APT56_07155 PF07702 UTRA domain APT56_07160 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APT56_07165 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APT56_07170 PF00890 FAD binding domain APT56_07170 PF02910 Fumarate reductase flavoprotein C-term APT56_07175 PF13085 2Fe-2S iron-sulfur cluster binding domain APT56_07175 PF13534 4Fe-4S dicluster domain APT56_07180 PF03937 Flavinator of succinate dehydrogenase APT56_07185 PF00285 Citrate synthase APT56_07195 PF09980 APT56_07195 APT56_07200 PF00390 Malic enzyme, N-terminal domain APT56_07200 PF01515 Phosphate acetyl/butaryl transferase APT56_07200 PF03949 Malic enzyme, NAD binding domain APT56_07205 PF00456 Transketolase, thiamine diphosphate binding domain APT56_07210 PF03169 APT56_07210 APT56_07215 PF01546 Peptidase family M20/M25/M40 APT56_07215 PF07687 Peptidase dimerisation domain APT56_07220 PF01546 Peptidase family M20/M25/M40 APT56_07220 PF07687 Peptidase dimerisation domain APT56_07225 PF01522 Polysaccharide deacetylase APT56_07230 PF00291 Pyridoxal-phosphate dependent enzyme APT56_07235 PF01037 AsnC family APT56_07235 PF13412 Winged helix-turn-helix DNA-binding APT56_07240 PF00676 Dehydrogenase E1 component APT56_07240 PF02779 Transketolase, pyrimidine binding domain APT56_07240 PF16078 APT56_07240 APT56_07240 PF16870 APT56_07240 APT56_07245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT56_07245 PF00364 Biotin-requiring enzyme APT56_07245 PF02817 e3 binding domain APT56_07250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_07250 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_07255 PF03969 AFG1-like ATPase APT56_07260 PF04542 Sigma-70 region 2 APT56_07260 PF08281 Sigma-70, region 4 APT56_07265 PF04773 FecR protein APT56_07265 PF16220 APT56_07265 APT56_07270 PF00593 TonB dependent receptor APT56_07270 PF07660 Secretin and TonB N terminus short domain APT56_07270 PF07715 TonB-dependent Receptor Plug Domain APT56_07275 PF10670 APT56_07275 APT56_07280 PF12365 APT56_07280 APT56_07290 PF11804 APT56_07290 APT56_07295 PF00579 tRNA synthetases class I (W and Y) APT56_07295 PF07411 Domain of unknown function (DUF1508) APT56_07305 PF00575 S1 RNA binding domain APT56_07305 PF09371 Tex-like protein N-terminal domain APT56_07305 PF12836 Helix-hairpin-helix motif APT56_07305 PF16921 APT56_07305 APT56_07310 PF06733 DEAD_2 APT56_07310 PF13307 Helicase C-terminal domain APT56_07315 PF13525 Outer membrane lipoprotein APT56_07320 PF00849 RNA pseudouridylate synthase APT56_07320 PF01479 S4 domain APT56_07325 PF02578 Multi-copper polyphenol oxidoreductase laccase APT56_07330 PF07167 APT56_07330 APT56_07335 PF00106 short chain dehydrogenase APT56_07340 PF05233 APT56_07340 APT56_07340 PF07879 APT56_07340 APT56_07345 PF10634 Fe2+ transport protein APT56_07350 PF13473 Cupredoxin-like domain APT56_07355 PF03239 APT56_07355 APT56_07360 PF12801 APT56_07360 APT56_07365 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_07365 PF08479 POTRA domain, ShlB-type APT56_07365 PF17287 APT56_07365 APT56_07370 PF04829 APT56_07370 APT56_07370 PF05594 APT56_07370 APT56_07370 PF05860 haemagglutination activity domain APT56_07370 PF13332 APT56_07370 APT56_07385 PF02567 Phenazine biosynthesis-like protein APT56_07390 PF04972 BON domain APT56_07395 PF05532 CsbD-like APT56_07400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_07400 PF02875 Mur ligase family, glutamate ligase domain APT56_07400 PF08245 Mur ligase middle domain APT56_07405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_07405 PF08245 Mur ligase middle domain APT56_07410 PF00005 ABC transporter APT56_07410 PF00664 ABC transporter transmembrane region APT56_07415 PF08909 APT56_07415 APT56_07420 PF04339 APT56_07420 APT56_07425 PF04305 APT56_07425 APT56_07430 PF03473 MOSC domain APT56_07430 PF03475 3-alpha domain APT56_07435 PF01471 Putative peptidoglycan binding domain APT56_07435 PF13406 Transglycosylase SLT domain APT56_07440 PF06078 Bacterial protein of unknown function (DUF937) APT56_07445 PF14488 Domain of unknown function (DUF4434) APT56_07450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_07450 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_07450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_07455 PF11182 APT56_07455 APT56_07460 PF00501 AMP-binding enzyme APT56_07465 PF00550 Phosphopantetheine attachment site APT56_07470 PF03062 APT56_07470 APT56_07475 PF16822 APT56_07475 APT56_07480 PF16822 APT56_07480 APT56_07485 PF13283 APT56_07485 APT56_07490 PF13632 Glycosyl transferase family group 2 APT56_07495 PF03170 Bacterial cellulose synthase subunit APT56_07500 PF02350 UDP-N-acetylglucosamine 2-epimerase APT56_07505 PF01545 Cation efflux family APT56_07515 PF07690 Major Facilitator Superfamily APT56_07520 PF13419 Haloacid dehalogenase-like hydrolase APT56_07525 PF13489 Methyltransferase domain APT56_07530 PF00691 OmpA family APT56_07535 PF00521 DNA gyrase/topoisomerase IV, subunit A APT56_07535 PF03989 DNA gyrase C-terminal domain, beta-propeller APT56_07540 PF00266 Aminotransferase class-V APT56_07545 PF00800 Prephenate dehydratase APT56_07545 PF01817 Chorismate mutase type II APT56_07550 PF00155 Aminotransferase class I and II APT56_07555 PF02153 Prephenate dehydrogenase APT56_07560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT56_07565 PF02224 Cytidylate kinase APT56_07570 PF00575 S1 RNA binding domain APT56_07575 PF00216 Bacterial DNA-binding protein APT56_07580 PF06305 APT56_07580 APT56_07590 PF00294 pfkB family carbohydrate kinase APT56_07595 PF01370 NAD dependent epimerase/dehydratase family APT56_07605 PF00291 Pyridoxal-phosphate dependent enzyme APT56_07610 PF03401 Tripartite tricarboxylate transporter family receptor APT56_07615 PF01614 Bacterial transcriptional regulator APT56_07615 PF09339 IclR helix-turn-helix domain APT56_07620 PF04199 Putative cyclase APT56_07625 PF13406 Transglycosylase SLT domain APT56_07630 PF00850 Histone deacetylase domain APT56_07635 PF01012 Electron transfer flavoprotein domain APT56_07640 PF00766 Electron transfer flavoprotein FAD-binding domain APT56_07640 PF01012 Electron transfer flavoprotein domain APT56_07645 PF02080 TrkA-C domain APT56_07645 PF06826 APT56_07645 APT56_07650 PF00155 Aminotransferase class I and II APT56_07655 PF06826 APT56_07655 APT56_07660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_07660 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_07660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_07660 PF12418 APT56_07660 APT56_07660 PF12806 APT56_07660 APT56_07665 PF00578 AhpC/TSA family APT56_07665 PF10417 C-terminal domain of 1-Cys peroxiredoxin APT56_07670 PF13531 Bacterial extracellular solute-binding protein APT56_07675 PF00528 Binding-protein-dependent transport system inner membrane component APT56_07680 PF00528 Binding-protein-dependent transport system inner membrane component APT56_07685 PF00005 ABC transporter APT56_07685 PF12857 APT56_07685 APT56_07690 PF01507 Phosphoadenosine phosphosulfate reductase family APT56_07695 PF01507 Phosphoadenosine phosphosulfate reductase family APT56_07700 PF00009 Elongation factor Tu GTP binding domain APT56_07705 PF04055 Radical SAM superfamily APT56_07715 PF00892 EamA-like transporter family APT56_07720 PF01245 Ribosomal protein L19 APT56_07725 PF00293 NUDIX domain APT56_07730 PF03193 Protein of unknown function, DUF258 APT56_07735 PF01435 Peptidase family M48 APT56_07735 PF16491 APT56_07735 APT56_07740 PF00929 Exonuclease APT56_07745 PF03853 YjeF-related protein N-terminus APT56_07750 PF07848 PaaX-like protein APT56_07750 PF08223 PaaX-like protein C-terminal domain APT56_07755 PF05138 Phenylacetic acid catabolic protein APT56_07760 PF06243 Phenylacetic acid degradation B APT56_07765 PF05138 Phenylacetic acid catabolic protein APT56_07770 PF01883 Domain of unknown function DUF59 APT56_07775 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_07775 PF00175 Oxidoreductase NAD-binding domain APT56_07775 PF00970 Oxidoreductase FAD-binding domain APT56_07780 PF00171 Aldehyde dehydrogenase family APT56_07785 PF00378 Enoyl-CoA hydratase/isomerase family APT56_07790 PF03061 Thioesterase superfamily APT56_07795 PF00501 AMP-binding enzyme APT56_07795 PF14535 AMP-binding enzyme C-terminal domain APT56_07800 PF01554 MatE APT56_07810 PF01197 Ribosomal protein L31 APT56_07815 PF03301 Tryptophan 2,3-dioxygenase APT56_07820 PF04199 Putative cyclase APT56_07825 PF04002 RadC-like JAB domain APT56_07830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT56_07835 PF02401 LytB protein APT56_07840 PF13410 Glutathione S-transferase, C-terminal domain APT56_07840 PF13417 Glutathione S-transferase, N-terminal domain APT56_07845 PF13180 PDZ domain APT56_07845 PF13365 Trypsin-like peptidase domain APT56_07850 PF00512 His Kinase A (phospho-acceptor) domain APT56_07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_07850 PF08521 APT56_07850 APT56_07855 PF00072 Response regulator receiver domain APT56_07855 PF00486 Transcriptional regulatory protein, C terminal APT56_07870 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT56_07870 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT56_07875 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT56_07875 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT56_07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_07880 PF03466 LysR substrate binding domain APT56_07890 PF04079 Putative transcriptional regulators (Ypuh-like) APT56_07895 PF00849 RNA pseudouridylate synthase APT56_07895 PF01479 S4 domain APT56_07900 PF02576 Uncharacterised BCR, YhbC family COG0779 APT56_07900 PF17384 APT56_07900 APT56_07905 PF00575 S1 RNA binding domain APT56_07905 PF08529 NusA N-terminal domain APT56_07905 PF13184 NusA-like KH domain APT56_07905 PF14520 Helix-hairpin-helix domain APT56_07910 PF00009 Elongation factor Tu GTP binding domain APT56_07910 PF04760 Translation initiation factor IF-2, N-terminal region APT56_07910 PF08364 APT56_07910 APT56_07910 PF11987 Translation-initiation factor 2 APT56_07915 PF02033 Ribosome-binding factor A APT56_07920 PF01509 TruB family pseudouridylate synthase (N terminal domain) APT56_07920 PF16198 APT56_07920 APT56_07925 PF00009 Elongation factor Tu GTP binding domain APT56_07925 PF00679 Elongation factor G C-terminus APT56_07925 PF03144 Elongation factor Tu domain 2 APT56_07935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_07935 PF03466 LysR substrate binding domain APT56_07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_07940 PF03466 LysR substrate binding domain APT56_07945 PF03401 Tripartite tricarboxylate transporter family receptor APT56_07950 PF07687 Peptidase dimerisation domain APT56_07955 PF03641 Possible lysine decarboxylase APT56_07960 PF00476 DNA polymerase family A APT56_07960 PF01367 5'-3' exonuclease, C-terminal SAM fold APT56_07960 PF01612 3'-5' exonuclease APT56_07960 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APT56_07965 PF02535 APT56_07965 APT56_07970 PF01738 Dienelactone hydrolase family APT56_07975 PF02690 APT56_07975 APT56_07980 PF03313 APT56_07980 APT56_07980 PF03315 Serine dehydratase beta chain APT56_07985 PF01435 Peptidase family M48 APT56_07990 PF00892 EamA-like transporter family APT56_07995 PF00581 Rhodanese-like domain APT56_08000 PF01966 HD domain APT56_08005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_08005 PF03466 LysR substrate binding domain APT56_08010 PF00005 ABC transporter APT56_08015 PF00528 Binding-protein-dependent transport system inner membrane component APT56_08020 PF13419 Haloacid dehalogenase-like hydrolase APT56_08025 PF13343 Bacterial extracellular solute-binding protein APT56_08030 PF01266 FAD dependent oxidoreductase APT56_08035 PF00355 Rieske [2Fe-2S] domain APT56_08035 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_08040 PF01757 APT56_08040 APT56_08045 PF03401 Tripartite tricarboxylate transporter family receptor APT56_08050 PF01614 Bacterial transcriptional regulator APT56_08050 PF09339 IclR helix-turn-helix domain APT56_08055 PF02609 Exonuclease VII small subunit APT56_08060 PF00348 Polyprenyl synthetase APT56_08065 PF02779 Transketolase, pyrimidine binding domain APT56_08065 PF02780 Transketolase, C-terminal domain APT56_08065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APT56_08070 PF02649 Type I GTP cyclohydrolase folE2 APT56_08075 PF05675 APT56_08075 APT56_08080 PF01250 Ribosomal protein S6 APT56_08090 PF01084 Ribosomal protein S18 APT56_08095 PF01281 Ribosomal protein L9, N-terminal domain APT56_08095 PF03948 Ribosomal protein L9, C-terminal domain APT56_08100 PF01163 RIO1 family APT56_08105 PF00772 DnaB-like helicase N terminal domain APT56_08105 PF03796 DnaB-like helicase C terminal domain APT56_08110 PF13593 SBF-like CPA transporter family (DUF4137) APT56_08115 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT56_08125 PF01037 AsnC family APT56_08125 PF13404 AsnC-type helix-turn-helix domain APT56_08145 PF09335 APT56_08145 APT56_08150 PF00155 Aminotransferase class I and II APT56_08150 PF00392 Bacterial regulatory proteins, gntR family APT56_08170 PF03486 HI0933-like protein APT56_08185 PF08085 APT56_08185 APT56_08200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT56_08200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT56_08205 PF00990 GGDEF domain APT56_08205 PF11563 Protoglobin APT56_08210 PF04381 Putative exonuclease, RdgC APT56_08215 PF11381 APT56_08215 APT56_08220 PF00083 Sugar (and other) transporter APT56_08225 PF00512 His Kinase A (phospho-acceptor) domain APT56_08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_08225 PF08521 APT56_08225 APT56_08230 PF00072 Response regulator receiver domain APT56_08230 PF00486 Transcriptional regulatory protein, C terminal APT56_08235 PF00154 recA bacterial DNA recombination protein APT56_08240 PF02631 RecX family APT56_08245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_08245 PF03466 LysR substrate binding domain APT56_08250 PF01717 Cobalamin-independent synthase, Catalytic domain APT56_08250 PF08267 Cobalamin-independent synthase, N-terminal domain APT56_08255 PF00501 AMP-binding enzyme APT56_08255 PF00550 Phosphopantetheine attachment site APT56_08255 PF13193 AMP-binding enzyme C-terminal domain APT56_08255 PF14602 Hexapeptide repeat of succinyl-transferase APT56_08260 PF11136 APT56_08260 APT56_08265 PF00549 CoA-ligase APT56_08265 PF08442 ATP-grasp domain APT56_08270 PF00549 CoA-ligase APT56_08270 PF02629 CoA binding domain APT56_08275 PF03741 APT56_08275 APT56_08280 PF03741 APT56_08280 APT56_08285 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APT56_08285 PF03900 Porphobilinogen deaminase, C-terminal domain APT56_08290 PF02602 Uroporphyrinogen-III synthase HemD APT56_08295 PF04375 APT56_08295 APT56_08300 PF07219 APT56_08300 APT56_08305 PF00719 Inorganic pyrophosphatase APT56_08310 PF01614 Bacterial transcriptional regulator APT56_08310 PF09339 IclR helix-turn-helix domain APT56_08315 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_08320 PF13458 Periplasmic binding protein APT56_08325 PF12973 ChrR Cupin-like domain APT56_08330 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_08335 PF00005 ABC transporter APT56_08335 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_08340 PF00005 ABC transporter APT56_08345 PF02653 APT56_08345 APT56_08350 PF07876 Stress responsive A/B Barrel Domain APT56_08355 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_08360 PF08085 APT56_08360 APT56_08365 PF02562 PhoH-like protein APT56_08365 PF13638 PIN domain APT56_08370 PF00578 AhpC/TSA family APT56_08375 PF04430 Protein of unknown function (DUF498/DUF598) APT56_08380 PF00155 Aminotransferase class I and II APT56_08385 PF00742 Homoserine dehydrogenase APT56_08385 PF01842 ACT domain APT56_08385 PF03447 Homoserine dehydrogenase, NAD binding domain APT56_08390 PF00291 Pyridoxal-phosphate dependent enzyme APT56_08390 PF14821 Threonine synthase N terminus APT56_08395 PF06004 Bacterial protein of unknown function (DUF903) APT56_08400 PF00316 Fructose-1-6-bisphosphatase APT56_08405 PF01433 Peptidase family M1 APT56_08405 PF11940 Domain of unknown function (DUF3458) APT56_08405 PF17432 APT56_08405 APT56_08410 PF13590 Domain of unknown function (DUF4136) APT56_08415 PF00816 H-NS histone family APT56_08420 PF01523 Putative modulator of DNA gyrase APT56_08425 PF00793 DAHP synthetase I family APT56_08430 PF01565 FAD binding domain APT56_08430 PF02913 FAD linked oxidases, C-terminal domain APT56_08435 PF01565 FAD binding domain APT56_08435 PF02913 FAD linked oxidases, C-terminal domain APT56_08440 PF01565 FAD binding domain APT56_08445 PF02754 APT56_08445 APT56_08445 PF13183 4Fe-4S dicluster domain APT56_08450 PF02233 NAD(P) transhydrogenase beta subunit APT56_08455 PF12769 Domain of unknown function (DUF3814) APT56_08460 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT56_08460 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT56_08465 PF05013 N-formylglutamate amidohydrolase APT56_08470 PF03401 Tripartite tricarboxylate transporter family receptor APT56_08475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_08475 PF03466 LysR substrate binding domain APT56_08480 PF03054 tRNA methyl transferase APT56_08485 PF01925 APT56_08485 APT56_08490 PF13410 Glutathione S-transferase, C-terminal domain APT56_08490 PF13417 Glutathione S-transferase, N-terminal domain APT56_08495 PF00206 Lyase APT56_08495 PF08328 Adenylosuccinate lyase C-terminal APT56_08500 PF01322 Cytochrome C' APT56_08505 PF01292 Prokaryotic cytochrome b561 APT56_08520 PF00583 Acetyltransferase (GNAT) family APT56_08525 PF11254 APT56_08525 APT56_08530 PF01594 APT56_08530 APT56_08540 PF13687 APT56_08540 APT56_08545 PF00717 Peptidase S24-like APT56_08560 PF11863 APT56_08560 APT56_08565 PF11681 APT56_08565 APT56_08615 PF11041 APT56_08615 APT56_08630 PF00589 Phage integrase family APT56_08650 PF00990 GGDEF domain APT56_08660 PF00892 EamA-like transporter family APT56_08690 PF03781 Sulfatase-modifying factor enzyme 1 APT56_08690 PF12867 DinB superfamily APT56_08695 PF10017 APT56_08695 APT56_08700 PF05957 APT56_08700 APT56_08705 PF13091 PLD-like domain APT56_08710 PF01645 Conserved region in glutamate synthase APT56_08715 PF04143 APT56_08715 APT56_08720 PF03547 APT56_08720 APT56_08725 PF00892 EamA-like transporter family APT56_08730 PF13673 Acetyltransferase (GNAT) domain APT56_08740 PF03942 APT56_08740 APT56_08750 PF00575 S1 RNA binding domain APT56_08750 PF00773 RNB domain APT56_08750 PF08206 Ribonuclease B OB domain APT56_08755 PF00588 SpoU rRNA Methylase family APT56_08755 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT56_08760 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_08765 PF13640 2OG-Fe(II) oxygenase superfamily APT56_08770 PF00216 Bacterial DNA-binding protein APT56_08780 PF03544 Gram-negative bacterial TonB protein C-terminal APT56_08785 PF01618 APT56_08785 APT56_08790 PF02472 Biopolymer transport protein ExbD/TolR APT56_08795 PF00072 Response regulator receiver domain APT56_08795 PF00486 Transcriptional regulatory protein, C terminal APT56_08800 PF00512 His Kinase A (phospho-acceptor) domain APT56_08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_08805 PF02705 APT56_08805 APT56_08810 PF00665 Integrase core domain APT56_08815 PF13518 Helix-turn-helix domain APT56_08820 PF00764 Arginosuccinate synthase APT56_08825 PF02321 Outer membrane efflux protein APT56_08830 PF16576 APT56_08830 APT56_08835 PF00873 AcrB/AcrD/AcrF family APT56_08840 PF00072 Response regulator receiver domain APT56_08840 PF00486 Transcriptional regulatory protein, C terminal APT56_08845 PF00512 His Kinase A (phospho-acceptor) domain APT56_08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_08850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_08850 PF03466 LysR substrate binding domain APT56_08855 PF04909 Amidohydrolase APT56_08860 PF03401 Tripartite tricarboxylate transporter family receptor APT56_08865 PF02627 Carboxymuconolactone decarboxylase family APT56_08875 PF12697 Alpha/beta hydrolase family APT56_08880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT56_08880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT56_08885 PF00202 Aminotransferase class-III APT56_08890 PF12112 Protein of unknown function (DUF3579) APT56_08895 PF00392 Bacterial regulatory proteins, gntR family APT56_08895 PF07729 FCD domain APT56_08900 PF01177 Asp/Glu/Hydantoin racemase APT56_08910 PF00528 Binding-protein-dependent transport system inner membrane component APT56_08915 PF00528 Binding-protein-dependent transport system inner membrane component APT56_08915 PF12911 APT56_08915 APT56_08920 PF07969 Amidohydrolase family APT56_08925 PF01979 Amidohydrolase family APT56_08930 PF00005 ABC transporter APT56_08930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_08935 PF00005 ABC transporter APT56_08935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_08940 PF06808 APT56_08940 APT56_08945 PF04290 APT56_08945 APT56_08950 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_08955 PF02687 APT56_08955 APT56_08960 PF01152 Bacterial-like globin APT56_08965 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family APT56_08970 PF13416 Bacterial extracellular solute-binding protein APT56_08975 PF00005 ABC transporter APT56_08975 PF08402 TOBE domain APT56_08980 PF00528 Binding-protein-dependent transport system inner membrane component APT56_08985 PF00528 Binding-protein-dependent transport system inner membrane component APT56_08990 PF03960 ArsC family APT56_08995 PF02245 Methylpurine-DNA glycosylase (MPG) APT56_09000 PF10707 APT56_09000 APT56_09005 PF02646 APT56_09005 APT56_09010 PF01425 Amidase APT56_09015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_09015 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_09020 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APT56_09025 PF01895 PhoU domain APT56_09030 PF04185 Phosphoesterase family APT56_09030 PF05506 APT56_09030 APT56_09035 PF04362 Bacterial Fe(2+) trafficking APT56_09040 PF00583 Acetyltransferase (GNAT) family APT56_09040 PF00696 Amino acid kinase family APT56_09045 PF00270 DEAD/DEAH box helicase APT56_09045 PF00271 Helicase conserved C-terminal domain APT56_09045 PF04408 Helicase associated domain (HA2) APT56_09045 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APT56_09045 PF11898 APT56_09045 APT56_09050 PF00528 Binding-protein-dependent transport system inner membrane component APT56_09055 PF00005 ABC transporter APT56_09055 PF09821 APT56_09055 APT56_09060 PF05118 Aspartyl/Asparaginyl beta-hydroxylase APT56_09065 PF01336 OB-fold nucleic acid binding domain APT56_09065 PF02811 PHP domain APT56_09065 PF07733 Bacterial DNA polymerase III alpha subunit APT56_09065 PF14579 Helix-hairpin-helix motif APT56_09070 PF00534 Glycosyl transferases group 1 APT56_09070 PF13439 Glycosyltransferase Family 4 APT56_09075 PF01522 Polysaccharide deacetylase APT56_09080 PF00535 Glycosyl transferase family 2 APT56_09085 PF00534 Glycosyl transferases group 1 APT56_09085 PF13439 Glycosyltransferase Family 4 APT56_09090 PF01522 Polysaccharide deacetylase APT56_09095 PF13439 Glycosyltransferase Family 4 APT56_09095 PF13692 Glycosyl transferases group 1 APT56_09105 PF02698 DUF218 domain APT56_09110 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT56_09115 PF00005 ABC transporter APT56_09115 PF00664 ABC transporter transmembrane region APT56_09120 PF00999 Sodium/hydrogen exchanger family APT56_09120 PF02254 TrkA-N domain APT56_09130 PF00990 GGDEF domain APT56_09135 PF00990 GGDEF domain APT56_09135 PF02743 Cache domain APT56_09140 PF11254 APT56_09140 APT56_09145 PF10150 Ribonuclease E/G family APT56_09175 PF00072 Response regulator receiver domain APT56_09175 PF00158 Sigma-54 interaction domain APT56_09175 PF02954 Bacterial regulatory protein, Fis family APT56_09180 PF00512 His Kinase A (phospho-acceptor) domain APT56_09180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_09185 PF00375 Sodium:dicarboxylate symporter family APT56_09190 PF02545 Maf-like protein APT56_09195 PF02590 Predicted SPOUT methyltransferase APT56_09200 PF02410 Oligomerisation domain APT56_09205 PF01467 Cytidylyltransferase APT56_09210 PF01218 Coproporphyrinogen III oxidase APT56_09215 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APT56_09215 PF02843 Phosphoribosylglycinamide synthetase, C domain APT56_09215 PF02844 Phosphoribosylglycinamide synthetase, N domain APT56_09220 PF01709 Transcriptional regulator APT56_09225 PF05872 APT56_09225 APT56_09230 PF00180 Isocitrate/isopropylmalate dehydrogenase APT56_09240 PF07690 Major Facilitator Superfamily APT56_09245 PF13437 HlyD family secretion protein APT56_09245 PF13533 Biotin-lipoyl like APT56_09250 PF02321 Outer membrane efflux protein APT56_09255 PF01047 MarR family APT56_09260 PF00892 EamA-like transporter family APT56_09265 PF00892 EamA-like transporter family APT56_09270 PF00107 Zinc-binding dehydrogenase APT56_09270 PF08240 Alcohol dehydrogenase GroES-like domain APT56_09275 PF00171 Aldehyde dehydrogenase family APT56_09280 PF13557 APT56_09280 APT56_09285 PF06433 Methylamine dehydrogenase heavy chain (MADH) APT56_09290 PF07291 APT56_09290 APT56_09295 PF13098 Thioredoxin-like domain APT56_09300 PF02975 Methylamine dehydrogenase, L chain APT56_09310 PF12833 Helix-turn-helix domain APT56_09310 PF14525 APT56_09310 APT56_09315 PF02677 APT56_09315 APT56_09320 PF03710 Glutamate-ammonia ligase adenylyltransferase APT56_09320 PF08335 GlnD PII-uridylyltransferase APT56_09335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_09335 PF07497 Rho termination factor, RNA-binding domain APT56_09335 PF07498 Rho termination factor, N-terminal domain APT56_09340 PF00085 Thioredoxin APT56_09345 PF00204 DNA gyrase B APT56_09345 PF00986 DNA gyrase B subunit, carboxyl terminus APT56_09345 PF01751 Toprim domain APT56_09345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_09350 PF14317 APT56_09350 APT56_09355 PF00521 DNA gyrase/topoisomerase IV, subunit A APT56_09355 PF03989 DNA gyrase C-terminal domain, beta-propeller APT56_09360 PF00440 Bacterial regulatory proteins, tetR family APT56_09360 PF13977 Bacterial transcriptional repressor APT56_09365 PF04235 APT56_09365 APT56_09370 PF00202 Aminotransferase class-III APT56_09375 PF01380 SIS domain APT56_09380 PF01047 MarR family APT56_09385 PF00583 Acetyltransferase (GNAT) family APT56_09390 PF00202 Aminotransferase class-III APT56_09395 PF06339 APT56_09395 APT56_09400 PF05721 Phytanoyl-CoA dioxygenase (PhyH) APT56_09405 PF03473 MOSC domain APT56_09405 PF03476 MOSC N-terminal beta barrel domain APT56_09410 PF00893 Small Multidrug Resistance protein APT56_09415 PF02261 Aspartate decarboxylase APT56_09420 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_09420 PF00175 Oxidoreductase NAD-binding domain APT56_09420 PF00970 Oxidoreductase FAD-binding domain APT56_09425 PF01266 FAD dependent oxidoreductase APT56_09430 PF13416 Bacterial extracellular solute-binding protein APT56_09435 PF03524 Conjugal transfer protein APT56_09440 PF01411 tRNA synthetases class II (A) APT56_09440 PF02272 DHHA1 domain APT56_09440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT56_09445 PF01206 Sulfurtransferase TusA APT56_09455 PF00886 Ribosomal protein S16 APT56_09460 PF01782 RimM N-terminal domain APT56_09460 PF05239 PRC-barrel domain APT56_09465 PF01746 tRNA (Guanine-1)-methyltransferase APT56_09470 PF07883 Cupin domain APT56_09470 PF13560 Helix-turn-helix domain APT56_09475 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_09480 PF00528 Binding-protein-dependent transport system inner membrane component APT56_09485 PF00005 ABC transporter APT56_09490 PF01266 FAD dependent oxidoreductase APT56_09495 PF00133 tRNA synthetases class I (I, L, M and V) APT56_09495 PF08264 Anticodon-binding domain of tRNA APT56_09495 PF10458 Valyl tRNA synthetase tRNA binding arm APT56_09500 PF00334 Nucleoside diphosphate kinase APT56_09505 PF04055 Radical SAM superfamily APT56_09510 PF13413 Helix-turn-helix domain APT56_09515 PF04551 GcpE protein APT56_09520 PF03129 Anticodon binding domain APT56_09520 PF13393 Histidyl-tRNA synthetase APT56_09525 PF09976 Tetratricopeptide repeat APT56_09530 PF13360 PQQ-like domain APT56_09535 PF01926 50S ribosome-binding GTPase APT56_09535 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT56_09540 PF00155 Aminotransferase class I and II APT56_09545 PF17209 APT56_09545 APT56_09550 PF01926 50S ribosome-binding GTPase APT56_09550 PF13167 APT56_09550 APT56_09550 PF16360 APT56_09550 APT56_09555 PF01145 SPFH domain / Band 7 family APT56_09555 PF12221 APT56_09555 APT56_09560 PF01145 SPFH domain / Band 7 family APT56_09565 PF13393 Histidyl-tRNA synthetase APT56_09570 PF00709 Adenylosuccinate synthetase APT56_09575 PF00156 Phosphoribosyl transferase domain APT56_09580 PF01165 Ribosomal protein S21 APT56_09585 PF01807 CHC2 zinc finger APT56_09585 PF08275 DNA primase catalytic core, N-terminal domain APT56_09585 PF08278 DNA primase DnaG DnaB-binding APT56_09585 PF10410 DnaB-helicase binding domain of primase APT56_09585 PF13662 Toprim domain APT56_09590 PF00140 Sigma-70 factor, region 1 APT56_09590 PF03979 Sigma-70 factor, region 1 APT56_09590 PF04539 Sigma-70 region 3 APT56_09590 PF04542 Sigma-70 region 2 APT56_09590 PF04545 Sigma-70, region 4 APT56_09590 PF04546 Sigma-70, non-essential region APT56_09605 PF00534 Glycosyl transferases group 1 APT56_09605 PF13439 Glycosyltransferase Family 4 APT56_09610 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT56_09620 PF01757 APT56_09620 APT56_09630 PF13400 APT56_09630 APT56_09635 PF07811 APT56_09635 APT56_09645 PF08666 SAF domain APT56_09645 PF16976 APT56_09645 APT56_09650 PF00263 APT56_09650 APT56_09650 PF13629 APT56_09650 APT56_09655 PF00437 Type II/IV secretion system protein APT56_09655 PF00498 FHA domain APT56_09660 PF00482 Type II secretion system (T2SS), protein F APT56_09665 PF00482 Type II secretion system (T2SS), protein F APT56_09675 PF01636 Phosphotransferase enzyme family APT56_09680 PF01207 Dihydrouridine synthase (Dus) APT56_09685 PF00571 CBS domain APT56_09690 PF03631 APT56_09690 APT56_09695 PF09842 APT56_09695 APT56_09700 PF02696 APT56_09700 APT56_09705 PF00072 Response regulator receiver domain APT56_09705 PF00486 Transcriptional regulatory protein, C terminal APT56_09710 PF00512 His Kinase A (phospho-acceptor) domain APT56_09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_09715 PF00563 EAL domain APT56_09715 PF00990 GGDEF domain APT56_09715 PF16448 APT56_09715 APT56_09720 PF00563 EAL domain APT56_09720 PF00990 GGDEF domain APT56_09725 PF01264 Chorismate synthase APT56_09730 PF01435 Peptidase family M48 APT56_09735 PF00563 EAL domain APT56_09735 PF00990 GGDEF domain APT56_09735 PF16448 APT56_09735 APT56_09740 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP APT56_09745 PF00353 Hemolysin-type calcium-binding repeat (2 copies) APT56_09745 PF13519 von Willebrand factor type A domain APT56_09755 PF00196 Bacterial regulatory proteins, luxR family APT56_09760 PF13437 HlyD family secretion protein APT56_09760 PF13533 Biotin-lipoyl like APT56_09765 PF00005 ABC transporter APT56_09765 PF00664 ABC transporter transmembrane region APT56_09765 PF03412 Peptidase C39 family APT56_09775 PF02321 Outer membrane efflux protein APT56_09780 PF00330 Aconitase family (aconitate hydratase) APT56_09785 PF00694 Aconitase C-terminal domain APT56_09790 PF00180 Isocitrate/isopropylmalate dehydrogenase APT56_09795 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT56_09795 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT56_09800 PF01391 Collagen triple helix repeat (20 copies) APT56_09800 PF01476 LysM domain APT56_09805 PF01416 tRNA pseudouridine synthase APT56_09810 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_09815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APT56_09830 PF09932 APT56_09830 APT56_09835 PF05154 APT56_09835 APT56_09840 PF01966 HD domain APT56_09855 PF04304 APT56_09855 APT56_09860 PF07859 alpha/beta hydrolase fold APT56_09865 PF00920 Dehydratase family APT56_09870 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_09875 PF06808 APT56_09875 APT56_09880 PF04290 APT56_09880 APT56_09885 PF00356 Bacterial regulatory proteins, lacI family APT56_09885 PF13377 Periplasmic binding protein-like domain APT56_09890 PF00892 EamA-like transporter family APT56_09895 PF00850 Histone deacetylase domain APT56_09900 PF07883 Cupin domain APT56_09905 PF00005 ABC transporter APT56_09905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_09910 PF00528 Binding-protein-dependent transport system inner membrane component APT56_09910 PF12911 APT56_09910 APT56_09915 PF00528 Binding-protein-dependent transport system inner membrane component APT56_09920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_09925 PF00171 Aldehyde dehydrogenase family APT56_09930 PF01546 Peptidase family M20/M25/M40 APT56_09930 PF07687 Peptidase dimerisation domain APT56_09935 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_09935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_09935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_09940 PF00392 Bacterial regulatory proteins, gntR family APT56_09940 PF07729 FCD domain APT56_09945 PF13231 APT56_09945 APT56_09955 PF04055 Radical SAM superfamily APT56_09955 PF06969 HemN C-terminal domain APT56_09960 PF00072 Response regulator receiver domain APT56_09960 PF00196 Bacterial regulatory proteins, luxR family APT56_09965 PF04321 RmlD substrate binding domain APT56_09970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT56_09970 PF02824 TGS domain APT56_09970 PF03129 Anticodon binding domain APT56_09970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT56_09975 PF00707 Translation initiation factor IF-3, C-terminal domain APT56_09975 PF05198 Translation initiation factor IF-3, N-terminal domain APT56_09980 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APT56_09980 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APT56_09985 PF03610 PTS system fructose IIA component APT56_09990 PF00381 PTS HPr component phosphorylation site APT56_09995 PF00391 PEP-utilising enzyme, mobile domain APT56_09995 PF02896 PEP-utilising enzyme, TIM barrel domain APT56_09995 PF05524 PEP-utilising enzyme, N-terminal APT56_10000 PF00909 Ammonium Transporter Family APT56_10005 PF00543 Nitrogen regulatory protein P-II APT56_10010 PF17274 APT56_10010 APT56_10015 PF04380 APT56_10015 APT56_10020 PF01078 Magnesium chelatase, subunit ChlI APT56_10020 PF13335 APT56_10020 APT56_10020 PF13541 Subunit ChlI of Mg-chelatase APT56_10025 PF01632 Ribosomal protein L35 APT56_10030 PF00453 Ribosomal protein L20 APT56_10035 PF01409 tRNA synthetases class II core domain (F) APT56_10035 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APT56_10040 PF01588 Putative tRNA binding domain APT56_10040 PF03147 Ferredoxin-fold anticodon binding domain APT56_10040 PF03483 B3/4 domain APT56_10040 PF03484 tRNA synthetase B5 domain APT56_10045 PF00216 Bacterial DNA-binding protein APT56_10050 PF13411 MerR HTH family regulatory protein APT56_10060 PF00589 Phage integrase family APT56_10065 PF02195 ParB-like nuclease domain APT56_10075 PF03837 APT56_10075 APT56_10080 PF09588 YqaJ-like viral recombinase domain APT56_10125 PF05866 Endodeoxyribonuclease RusA APT56_10140 PF10045 APT56_10140 APT56_10145 PF17289 APT56_10145 APT56_10150 PF06381 APT56_10150 APT56_10155 PF04233 APT56_10155 APT56_10160 PF09979 APT56_10160 APT56_10170 PF09950 APT56_10170 APT56_10180 PF13262 APT56_10180 APT56_10200 PF11863 APT56_10200 APT56_10205 PF11681 APT56_10205 APT56_10245 PF04865 APT56_10245 APT56_10250 PF11041 APT56_10250 APT56_10260 PF16778 APT56_10260 APT56_10280 PF03869 Arc-like DNA binding domain APT56_10285 PF02498 APT56_10285 APT56_10300 PF02586 Uncharacterised ACR, COG2135 APT56_10320 PF07978 NIPSNAP APT56_10325 PF02567 Phenazine biosynthesis-like protein APT56_10330 PF00583 Acetyltransferase (GNAT) family APT56_10335 PF12796 Ankyrin repeats (3 copies) APT56_10345 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APT56_10350 PF03401 Tripartite tricarboxylate transporter family receptor APT56_10355 PF01380 SIS domain APT56_10355 PF01418 Helix-turn-helix domain, rpiR family APT56_10365 PF04366 APT56_10365 APT56_10375 PF01037 AsnC family APT56_10375 PF13412 Winged helix-turn-helix DNA-binding APT56_10380 PF00892 EamA-like transporter family APT56_10395 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) APT56_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10405 PF03466 LysR substrate binding domain APT56_10410 PF03401 Tripartite tricarboxylate transporter family receptor APT56_10415 PF05013 N-formylglutamate amidohydrolase APT56_10425 PF09084 NMT1/THI5 like APT56_10430 PF00528 Binding-protein-dependent transport system inner membrane component APT56_10435 PF00005 ABC transporter APT56_10440 PF00034 Cytochrome c APT56_10445 PF02566 OsmC-like protein APT56_10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10450 PF03466 LysR substrate binding domain APT56_10455 PF13593 SBF-like CPA transporter family (DUF4137) APT56_10460 PF00355 Rieske [2Fe-2S] domain APT56_10465 PF00005 ABC transporter APT56_10465 PF00664 ABC transporter transmembrane region APT56_10470 PF00248 Aldo/keto reductase family APT56_10480 PF03929 APT56_10480 APT56_10485 PF00149 Calcineurin-like phosphoesterase APT56_10490 PF00905 Penicillin binding protein transpeptidase domain APT56_10490 PF00912 Transglycosylase APT56_10490 PF17092 APT56_10490 APT56_10500 PF07690 Major Facilitator Superfamily APT56_10505 PF13994 APT56_10505 APT56_10510 PF00535 Glycosyl transferase family 2 APT56_10515 PF01522 Polysaccharide deacetylase APT56_10515 PF14883 Hypothetical glycosyl hydrolase family 13 APT56_10520 PF13429 Tetratricopeptide repeat APT56_10525 PF00990 GGDEF domain APT56_10530 PF00326 Prolyl oligopeptidase family APT56_10540 PF03061 Thioesterase superfamily APT56_10545 PF00817 impB/mucB/samB family APT56_10545 PF11798 IMS family HHH motif APT56_10545 PF11799 impB/mucB/samB family C-terminal domain APT56_10550 PF09424 Yqey-like protein APT56_10560 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_10560 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_10565 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_10575 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_10575 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_10585 PF01494 FAD binding domain APT56_10600 PF13279 Thioesterase-like superfamily APT56_10605 PF03279 APT56_10605 APT56_10610 PF00535 Glycosyl transferase family 2 APT56_10615 PF00501 AMP-binding enzyme APT56_10625 PF00550 Phosphopantetheine attachment site APT56_10630 PF00550 Phosphopantetheine attachment site APT56_10635 PF01553 Acyltransferase APT56_10640 PF13723 APT56_10640 APT56_10645 PF01648 4'-phosphopantetheinyl transferase superfamily APT56_10650 PF00042 Globin APT56_10650 PF00175 Oxidoreductase NAD-binding domain APT56_10650 PF00970 Oxidoreductase FAD-binding domain APT56_10655 PF02082 Transcriptional regulator APT56_10660 PF01266 FAD dependent oxidoreductase APT56_10665 PF00892 EamA-like transporter family APT56_10670 PF01619 Proline dehydrogenase APT56_10675 PF02311 AraC-like ligand binding domain APT56_10675 PF12833 Helix-turn-helix domain APT56_10680 PF12146 Putative lysophospholipase APT56_10685 PF02525 Flavodoxin-like fold APT56_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10690 PF03466 LysR substrate binding domain APT56_10695 PF07690 Major Facilitator Superfamily APT56_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10705 PF03466 LysR substrate binding domain APT56_10710 PF00043 Glutathione S-transferase, C-terminal domain APT56_10710 PF13417 Glutathione S-transferase, N-terminal domain APT56_10715 PF01243 Pyridoxamine 5'-phosphate oxidase APT56_10720 PF01638 HxlR-like helix-turn-helix APT56_10725 PF07690 Major Facilitator Superfamily APT56_10730 PF00005 ABC transporter APT56_10735 PF00528 Binding-protein-dependent transport system inner membrane component APT56_10740 PF13379 NMT1-like family APT56_10750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_10750 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_10750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_10750 PF12418 APT56_10750 APT56_10750 PF12806 APT56_10750 APT56_10755 PF00501 AMP-binding enzyme APT56_10755 PF13193 AMP-binding enzyme C-terminal domain APT56_10760 PF00027 Cyclic nucleotide-binding domain APT56_10760 PF13545 Crp-like helix-turn-helix domain APT56_10765 PF01177 Asp/Glu/Hydantoin racemase APT56_10770 PF12802 MarR family APT56_10775 PF00456 Transketolase, thiamine diphosphate binding domain APT56_10780 PF01810 APT56_10780 APT56_10785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_10785 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_10790 PF01904 Protein of unknown function DUF72 APT56_10795 PF01810 APT56_10795 APT56_10800 PF00155 Aminotransferase class I and II APT56_10800 PF00392 Bacterial regulatory proteins, gntR family APT56_10805 PF13302 Acetyltransferase (GNAT) domain APT56_10810 PF00892 EamA-like transporter family APT56_10815 PF00892 EamA-like transporter family APT56_10820 PF00085 Thioredoxin APT56_10825 PF01546 Peptidase family M20/M25/M40 APT56_10830 PF01554 MatE APT56_10835 PF00378 Enoyl-CoA hydratase/isomerase family APT56_10840 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_10845 PF00440 Bacterial regulatory proteins, tetR family APT56_10845 PF08359 YsiA-like protein, C-terminal region APT56_10850 PF00501 AMP-binding enzyme APT56_10850 PF13193 AMP-binding enzyme C-terminal domain APT56_10855 PF00821 Phosphoenolpyruvate carboxykinase APT56_10855 PF17297 APT56_10855 APT56_10860 PF08241 Methyltransferase domain APT56_10865 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_10875 PF01613 Flavin reductase like domain APT56_10880 PF01593 Flavin containing amine oxidoreductase APT56_10885 PF13557 APT56_10885 APT56_10890 PF13417 Glutathione S-transferase, N-terminal domain APT56_10900 PF12833 Helix-turn-helix domain APT56_10900 PF14525 APT56_10900 APT56_10905 PF03401 Tripartite tricarboxylate transporter family receptor APT56_10910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_10910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_10915 PF03737 Demethylmenaquinone methyltransferase APT56_10920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10920 PF03466 LysR substrate binding domain APT56_10925 PF01070 FMN-dependent dehydrogenase APT56_10935 PF00107 Zinc-binding dehydrogenase APT56_10935 PF08240 Alcohol dehydrogenase GroES-like domain APT56_10945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_10950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_10955 PF00202 Aminotransferase class-III APT56_10960 PF00005 ABC transporter APT56_10960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_10965 PF00528 Binding-protein-dependent transport system inner membrane component APT56_10970 PF00528 Binding-protein-dependent transport system inner membrane component APT56_10975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_10985 PF03466 LysR substrate binding domain APT56_10990 PF00990 GGDEF domain APT56_10990 PF08447 PAS fold APT56_10995 PF02678 Pirin APT56_10995 PF05726 Pirin C-terminal cupin domain APT56_11000 PF03167 Uracil DNA glycosylase superfamily APT56_11010 PF03918 Cytochrome C biogenesis protein APT56_11015 PF08534 Redoxin APT56_11020 PF01578 APT56_11020 APT56_11020 PF16327 APT56_11020 APT56_11025 PF03100 CcmE APT56_11030 PF04995 APT56_11030 APT56_11035 PF01578 APT56_11035 APT56_11040 PF03379 APT56_11040 APT56_11045 PF00005 ABC transporter APT56_11050 PF03264 NapC/NirT cytochrome c family, N-terminal region APT56_11055 PF00384 Molybdopterin oxidoreductase APT56_11055 PF01568 Molydopterin dinucleotide binding domain APT56_11060 PF02613 Nitrate reductase delta subunit APT56_11065 PF13247 4Fe-4S dicluster domain APT56_11070 PF03916 APT56_11070 APT56_11075 PF00384 Molybdopterin oxidoreductase APT56_11075 PF01568 Molydopterin dinucleotide binding domain APT56_11080 PF05853 Prokaryotic protein of unknown function (DUF849) APT56_11085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_11085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_11090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11090 PF03466 LysR substrate binding domain APT56_11095 PF00392 Bacterial regulatory proteins, gntR family APT56_11095 PF07729 FCD domain APT56_11100 PF00920 Dehydratase family APT56_11105 PF03401 Tripartite tricarboxylate transporter family receptor APT56_11110 PF00563 EAL domain APT56_11110 PF00990 GGDEF domain APT56_11110 PF13426 PAS domain APT56_11115 PF00378 Enoyl-CoA hydratase/isomerase family APT56_11120 PF00593 TonB dependent receptor APT56_11120 PF07715 TonB-dependent Receptor Plug Domain APT56_11130 PF03401 Tripartite tricarboxylate transporter family receptor APT56_11135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11135 PF03466 LysR substrate binding domain APT56_11140 PF02515 CoA-transferase family III APT56_11145 PF00378 Enoyl-CoA hydratase/isomerase family APT56_11150 PF05448 Acetyl xylan esterase (AXE1) APT56_11155 PF05708 Orthopoxvirus protein of unknown function (DUF830) APT56_11160 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_11165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11165 PF03466 LysR substrate binding domain APT56_11175 PF00593 TonB dependent receptor APT56_11175 PF07715 TonB-dependent Receptor Plug Domain APT56_11180 PF02311 AraC-like ligand binding domain APT56_11180 PF12833 Helix-turn-helix domain APT56_11185 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase APT56_11190 PF00293 NUDIX domain APT56_11195 PF00440 Bacterial regulatory proteins, tetR family APT56_11195 PF02909 Tetracyclin repressor, C-terminal all-alpha domain APT56_11200 PF07690 Major Facilitator Superfamily APT56_11205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11205 PF03466 LysR substrate binding domain APT56_11210 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_11215 PF00083 Sugar (and other) transporter APT56_11215 PF07690 Major Facilitator Superfamily APT56_11220 PF01323 DSBA-like thioredoxin domain APT56_11225 PF13458 Periplasmic binding protein APT56_11230 PF00392 Bacterial regulatory proteins, gntR family APT56_11230 PF07702 UTRA domain APT56_11235 PF00501 AMP-binding enzyme APT56_11240 PF04199 Putative cyclase APT56_11245 PF03401 Tripartite tricarboxylate transporter family receptor APT56_11250 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_11260 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family APT56_11260 PF01965 DJ-1/PfpI family APT56_11265 PF01965 DJ-1/PfpI family APT56_11270 PF01037 AsnC family APT56_11270 PF13412 Winged helix-turn-helix DNA-binding APT56_11275 PF01810 APT56_11275 APT56_11280 PF00005 ABC transporter APT56_11280 PF00664 ABC transporter transmembrane region APT56_11285 PF04290 APT56_11285 APT56_11285 PF06808 APT56_11285 APT56_11290 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_11295 PF01614 Bacterial transcriptional regulator APT56_11295 PF09339 IclR helix-turn-helix domain APT56_11300 PF00108 Thiolase, N-terminal domain APT56_11300 PF02803 Thiolase, C-terminal domain APT56_11305 PF00501 AMP-binding enzyme APT56_11305 PF13193 AMP-binding enzyme C-terminal domain APT56_11310 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_11320 PF03479 Domain of unknown function (DUF296) APT56_11325 PF02417 APT56_11325 APT56_11330 PF09828 APT56_11330 APT56_11335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11335 PF03466 LysR substrate binding domain APT56_11340 PF01804 Penicillin amidase APT56_11345 PF00005 ABC transporter APT56_11345 PF00664 ABC transporter transmembrane region APT56_11350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11350 PF03466 LysR substrate binding domain APT56_11355 PF16310 APT56_11355 APT56_11360 PF01266 FAD dependent oxidoreductase APT56_11365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11365 PF03466 LysR substrate binding domain APT56_11370 PF05013 N-formylglutamate amidohydrolase APT56_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11375 PF03466 LysR substrate binding domain APT56_11380 PF07690 Major Facilitator Superfamily APT56_11385 PF07690 Major Facilitator Superfamily APT56_11390 PF00440 Bacterial regulatory proteins, tetR family APT56_11390 PF16925 APT56_11390 APT56_11395 PF13788 APT56_11395 APT56_11400 PF00356 Bacterial regulatory proteins, lacI family APT56_11400 PF13377 Periplasmic binding protein-like domain APT56_11405 PF07690 Major Facilitator Superfamily APT56_11410 PF01425 Amidase APT56_11415 PF07007 Protein of unknown function (DUF1311) APT56_11420 PF01914 APT56_11420 APT56_11425 PF13387 APT56_11425 APT56_11435 PF06912 APT56_11435 APT56_11440 PF01925 APT56_11440 APT56_11445 PF00891 O-methyltransferase APT56_11445 PF16864 APT56_11445 APT56_11455 PF11583 P-aminobenzoate N-oxygenase AurF APT56_11460 PF03060 Nitronate monooxygenase APT56_11470 PF03061 Thioesterase superfamily APT56_11485 PF03372 Endonuclease/Exonuclease/phosphatase family APT56_11490 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_11495 PF00392 Bacterial regulatory proteins, gntR family APT56_11495 PF07729 FCD domain APT56_11500 PF00171 Aldehyde dehydrogenase family APT56_11505 PF00677 Lumazine binding domain APT56_11510 PF07171 MlrC C-terminus APT56_11510 PF07364 Protein of unknown function (DUF1485) APT56_11515 PF07690 Major Facilitator Superfamily APT56_11520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11520 PF03466 LysR substrate binding domain APT56_11525 PF13302 Acetyltransferase (GNAT) domain APT56_11530 PF00122 E1-E2 ATPase APT56_11530 PF00403 Heavy-metal-associated domain APT56_11530 PF00702 haloacid dehalogenase-like hydrolase APT56_11535 PF00376 MerR family regulatory protein APT56_11535 PF09278 MerR, DNA binding APT56_11540 PF00881 Nitroreductase family APT56_11550 PF04542 Sigma-70 region 2 APT56_11550 PF08281 Sigma-70, region 4 APT56_11555 PF04773 FecR protein APT56_11555 PF16220 APT56_11555 APT56_11560 PF00593 TonB dependent receptor APT56_11560 PF07660 Secretin and TonB N terminus short domain APT56_11560 PF07715 TonB-dependent Receptor Plug Domain APT56_11565 PF00676 Dehydrogenase E1 component APT56_11565 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal APT56_11570 PF02779 Transketolase, pyrimidine binding domain APT56_11570 PF02780 Transketolase, C-terminal domain APT56_11575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT56_11575 PF00364 Biotin-requiring enzyme APT56_11575 PF02817 e3 binding domain APT56_11580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_11580 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_11585 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT56_11590 PF00206 Lyase APT56_11590 PF14698 Argininosuccinate lyase C-terminal APT56_11595 PF00924 Mechanosensitive ion channel APT56_11600 PF00795 Carbon-nitrogen hydrolase APT56_11600 PF02540 NAD synthase APT56_11605 PF00543 Nitrogen regulatory protein P-II APT56_11610 PF04072 Leucine carboxyl methyltransferase APT56_11620 PF01402 Ribbon-helix-helix protein, copG family APT56_11625 PF00482 Type II secretion system (T2SS), protein F APT56_11630 PF00263 APT56_11630 APT56_11630 PF03958 Bacterial type II/III secretion system short domain APT56_11635 PF00437 Type II/IV secretion system protein APT56_11640 PF00578 AhpC/TSA family APT56_11645 PF00593 TonB dependent receptor APT56_11645 PF07715 TonB-dependent Receptor Plug Domain APT56_11650 PF01203 APT56_11650 APT56_11655 PF04612 Type II secretion system (T2SS), protein M APT56_11660 PF12693 GspL periplasmic domain APT56_11665 PF03934 Type II secretion system (T2SS), protein K APT56_11670 PF07963 Prokaryotic N-terminal methylation motif APT56_11670 PF11612 Type II secretion system (T2SS), protein J APT56_11675 PF02501 Type II secretion system (T2SS), protein I APT56_11675 PF07963 Prokaryotic N-terminal methylation motif APT56_11680 PF07963 Prokaryotic N-terminal methylation motif APT56_11680 PF12019 Type II transport protein GspH APT56_11685 PF07963 Prokaryotic N-terminal methylation motif APT56_11685 PF08334 Type II secretion system (T2SS), protein G APT56_11695 PF05787 Bacterial protein of unknown function (DUF839) APT56_11700 PF13385 Concanavalin A-like lectin/glucanases superfamily APT56_11710 PF04185 Phosphoesterase family APT56_11710 PF05506 APT56_11710 APT56_11715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11715 PF03466 LysR substrate binding domain APT56_11720 PF01019 Gamma-glutamyltranspeptidase APT56_11725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_11730 PF00528 Binding-protein-dependent transport system inner membrane component APT56_11735 PF00528 Binding-protein-dependent transport system inner membrane component APT56_11735 PF12911 APT56_11735 APT56_11740 PF00005 ABC transporter APT56_11740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_11745 PF07152 YaeQ protein APT56_11755 PF00440 Bacterial regulatory proteins, tetR family APT56_11760 PF00106 short chain dehydrogenase APT56_11765 PF07690 Major Facilitator Superfamily APT56_11770 PF04345 Chorismate lyase APT56_11775 PF00849 RNA pseudouridylate synthase APT56_11775 PF01479 S4 domain APT56_11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11780 PF03466 LysR substrate binding domain APT56_11785 PF16576 APT56_11785 APT56_11790 PF00873 AcrB/AcrD/AcrF family APT56_11795 PF02321 Outer membrane efflux protein APT56_11800 PF04226 APT56_11800 APT56_11805 PF02630 SCO1/SenC APT56_11810 PF13489 Methyltransferase domain APT56_11815 PF01432 Peptidase family M3 APT56_11820 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APT56_11820 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APT56_11825 PF00072 Response regulator receiver domain APT56_11825 PF00196 Bacterial regulatory proteins, luxR family APT56_11830 PF00512 His Kinase A (phospho-acceptor) domain APT56_11830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_11830 PF08448 PAS fold APT56_11830 PF13188 PAS domain APT56_11835 PF00456 Transketolase, thiamine diphosphate binding domain APT56_11840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT56_11840 PF00364 Biotin-requiring enzyme APT56_11840 PF02817 e3 binding domain APT56_11845 PF00364 Biotin-requiring enzyme APT56_11845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_11845 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_11850 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_11855 PF03466 LysR substrate binding domain APT56_11860 PF14070 APT56_11860 APT56_11870 PF00669 Bacterial flagellin N-terminal helical region APT56_11870 PF00700 Bacterial flagellin C-terminal helical region APT56_11870 PF12445 APT56_11870 APT56_11875 PF10119 APT56_11875 APT56_11875 PF13847 Methyltransferase domain APT56_11880 PF04539 Sigma-70 region 3 APT56_11880 PF04542 Sigma-70 region 2 APT56_11880 PF04545 Sigma-70, region 4 APT56_11885 PF05247 Flagellar transcriptional activator (FlhD) APT56_11890 PF05280 Flagellar transcriptional activator (FlhC) APT56_11895 PF01618 APT56_11895 APT56_11900 PF00691 OmpA family APT56_11900 PF13677 APT56_11900 APT56_11905 PF00072 Response regulator receiver domain APT56_11910 PF01584 CheW-like domain APT56_11910 PF01627 Hpt domain APT56_11910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_11910 PF02895 Signal transducing histidine kinase, homodimeric domain APT56_11910 PF09078 CheY binding APT56_11915 PF01584 CheW-like domain APT56_11920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_11920 PF00672 HAMP domain APT56_11920 PF02203 Tar ligand binding domain homologue APT56_11925 PF01739 CheR methyltransferase, SAM binding domain APT56_11925 PF03705 CheR methyltransferase, all-alpha domain APT56_11930 PF00072 Response regulator receiver domain APT56_11930 PF01339 CheB methylesterase APT56_11935 PF00072 Response regulator receiver domain APT56_11940 PF04344 Chemotaxis phosphatase, CheZ APT56_11945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_11950 PF01312 FlhB HrpN YscU SpaS Family APT56_11955 PF00771 FHIPEP family APT56_11960 PF00448 SRP54-type protein, GTPase domain APT56_11965 PF05130 FlgN protein APT56_11970 PF04316 Anti-sigma-28 factor, FlgM APT56_11975 PF13144 SAF-like APT56_11980 PF00460 Flagella basal body rod protein APT56_11985 PF00460 Flagella basal body rod protein APT56_11985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_11990 PF03963 APT56_11990 APT56_11990 PF13860 FlgD Ig-like domain APT56_11990 PF13861 FlgD Tudor-like domain APT56_11995 PF00460 Flagella basal body rod protein APT56_11995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_11995 PF07559 Flagellar basal body protein FlaE APT56_12000 PF00460 Flagella basal body rod protein APT56_12000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_12005 PF00460 Flagella basal body rod protein APT56_12005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_12010 PF02107 APT56_12010 APT56_12015 PF02119 APT56_12015 APT56_12020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APT56_12020 PF10135 APT56_12020 APT56_12025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal APT56_12030 PF00669 Bacterial flagellin N-terminal helical region APT56_12035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12035 PF00672 HAMP domain APT56_12035 PF02203 Tar ligand binding domain homologue APT56_12040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12040 PF00672 HAMP domain APT56_12040 PF02203 Tar ligand binding domain homologue APT56_12050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12050 PF00672 HAMP domain APT56_12050 PF02203 Tar ligand binding domain homologue APT56_12055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12055 PF00672 HAMP domain APT56_12055 PF08447 PAS fold APT56_12060 PF01311 APT56_12060 APT56_12065 PF01313 APT56_12065 APT56_12070 PF00813 APT56_12070 APT56_12075 PF04347 APT56_12075 APT56_12080 PF01052 Surface presentation of antigens (SPOA) APT56_12085 PF01052 Surface presentation of antigens (SPOA) APT56_12085 PF02154 Flagellar motor switch protein FliM APT56_12090 PF03748 APT56_12090 APT56_12095 PF02120 Flagellar hook-length control protein FliK APT56_12100 PF02050 Flagellar FliJ protein APT56_12105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT56_12110 PF02108 APT56_12110 APT56_12115 PF01706 FliG C-terminal domain APT56_12115 PF14841 FliG middle domain APT56_12115 PF14842 FliG N-terminal domain APT56_12120 PF01514 Secretory protein of YscJ/FliF family APT56_12120 PF08345 APT56_12120 APT56_12125 PF02049 APT56_12125 APT56_12135 PF01312 FlhB HrpN YscU SpaS Family APT56_12140 PF02120 Flagellar hook-length control protein FliK APT56_12145 PF05400 Flagellar protein FliT APT56_12150 PF02561 Flagellar protein FliS APT56_12155 PF02465 APT56_12155 APT56_12155 PF07195 APT56_12155 APT56_12155 PF07196 Flagellin hook IN motif APT56_12160 PF03646 FlaG protein APT56_12165 PF01614 Bacterial transcriptional regulator APT56_12165 PF09339 IclR helix-turn-helix domain APT56_12170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_12170 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_12170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_12175 PF02515 CoA-transferase family III APT56_12180 PF03401 Tripartite tricarboxylate transporter family receptor APT56_12185 PF07883 Cupin domain APT56_12190 PF08245 Mur ligase middle domain APT56_12195 PF05036 Sporulation related domain APT56_12200 PF02674 APT56_12200 APT56_12205 PF00156 Phosphoribosyl transferase domain APT56_12205 PF13522 Glutamine amidotransferase domain APT56_12210 PF01863 Protein of unknown function DUF45 APT56_12215 PF06042 Bacterial protein of unknown function (DUF925) APT56_12220 PF02600 Disulfide bond formation protein DsbB APT56_12225 PF01914 APT56_12225 APT56_12230 PF01842 ACT domain APT56_12230 PF01909 Nucleotidyltransferase domain APT56_12230 PF01966 HD domain APT56_12230 PF08335 GlnD PII-uridylyltransferase APT56_12235 PF00557 Metallopeptidase family M24 APT56_12240 PF00318 Ribosomal protein S2 APT56_12245 PF00889 Elongation factor TS APT56_12250 PF00696 Amino acid kinase family APT56_12255 PF01765 Ribosome recycling factor APT56_12260 PF01255 Putative undecaprenyl diphosphate synthase APT56_12265 PF01148 Cytidylyltransferase family APT56_12270 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APT56_12270 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal APT56_12270 PF13288 DXP reductoisomerase C-terminal domain APT56_12275 PF02163 Peptidase family M50 APT56_12275 PF13180 PDZ domain APT56_12280 PF01103 Surface antigen APT56_12280 PF07244 Surface antigen variable number repeat APT56_12285 PF03938 Outer membrane protein (OmpH-like) APT56_12290 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_12290 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APT56_12290 PF14602 Hexapeptide repeat of succinyl-transferase APT56_12295 PF07977 FabA-like domain APT56_12300 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_12300 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APT56_12305 PF02684 APT56_12305 APT56_12310 PF01351 Ribonuclease HII APT56_12315 PF00588 SpoU rRNA Methylase family APT56_12320 PF11008 APT56_12320 APT56_12330 PF11008 APT56_12330 APT56_12335 PF03618 APT56_12335 APT56_12340 PF00391 PEP-utilising enzyme, mobile domain APT56_12340 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT56_12340 PF02896 PEP-utilising enzyme, TIM barrel domain APT56_12345 PF00593 TonB dependent receptor APT56_12345 PF07660 Secretin and TonB N terminus short domain APT56_12345 PF07715 TonB-dependent Receptor Plug Domain APT56_12350 PF04773 FecR protein APT56_12350 PF16220 APT56_12350 APT56_12355 PF04542 Sigma-70 region 2 APT56_12355 PF08281 Sigma-70, region 4 APT56_12360 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT56_12360 PF12833 Helix-turn-helix domain APT56_12365 PF00117 Glutamine amidotransferase class-I APT56_12370 PF01957 NfeD-like C-terminal, partner-binding APT56_12375 PF01145 SPFH domain / Band 7 family APT56_12375 PF16200 APT56_12375 APT56_12380 PF00990 GGDEF domain APT56_12385 PF01668 SmpB protein APT56_12390 PF03364 Polyketide cyclase / dehydrase and lipid transport APT56_12395 PF03658 RnfH family Ubiquitin APT56_12400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_12400 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_12400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_12405 PF16113 APT56_12405 APT56_12410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_12410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_12415 PF03061 Thioesterase superfamily APT56_12420 PF01988 APT56_12420 APT56_12430 PF02618 YceG-like family APT56_12435 PF02223 Thymidylate kinase APT56_12440 PF13177 DNA polymerase III, delta subunit APT56_12445 PF01026 TatD related DNase APT56_12450 PF12796 Ankyrin repeats (3 copies) APT56_12455 PF01614 Bacterial transcriptional regulator APT56_12455 PF09339 IclR helix-turn-helix domain APT56_12460 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_12465 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12470 PF00005 ABC transporter APT56_12475 PF00491 Arginase family APT56_12480 PF01565 FAD binding domain APT56_12480 PF08031 Berberine and berberine like APT56_12485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT56_12485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APT56_12490 PF11738 Protein of unknown function (DUF3298) APT56_12495 PF03099 Biotin/lipoate A/B protein ligase family APT56_12500 PF10437 Bacterial lipoate protein ligase C-terminus APT56_12505 PF00583 Acetyltransferase (GNAT) family APT56_12510 PF00043 Glutathione S-transferase, C-terminal domain APT56_12510 PF02798 Glutathione S-transferase, N-terminal domain APT56_12515 PF00892 EamA-like transporter family APT56_12520 PF01037 AsnC family APT56_12520 PF13412 Winged helix-turn-helix DNA-binding APT56_12525 PF00255 Glutathione peroxidase APT56_12530 PF07690 Major Facilitator Superfamily APT56_12535 PF07394 APT56_12535 APT56_12540 PF08811 APT56_12540 APT56_12550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_12550 PF03466 LysR substrate binding domain APT56_12555 PF07005 Protein of unknown function, DUF1537 APT56_12555 PF17042 APT56_12555 APT56_12560 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT56_12570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_12570 PF08447 PAS fold APT56_12575 PF00875 DNA photolyase APT56_12575 PF03441 FAD binding domain of DNA photolyase APT56_12580 PF02515 CoA-transferase family III APT56_12585 PF00578 AhpC/TSA family APT56_12590 PF12779 APT56_12590 APT56_12595 PF07681 APT56_12595 APT56_12600 PF00270 DEAD/DEAH box helicase APT56_12600 PF00271 Helicase conserved C-terminal domain APT56_12600 PF03880 DbpA RNA binding domain APT56_12605 PF01614 Bacterial transcriptional regulator APT56_12605 PF09339 IclR helix-turn-helix domain APT56_12610 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_12610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_12610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_12615 PF01515 Phosphate acetyl/butaryl transferase APT56_12620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_12625 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12630 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12630 PF12911 APT56_12630 APT56_12635 PF00005 ABC transporter APT56_12635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_12640 PF07969 Amidohydrolase family APT56_12645 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT56_12645 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT56_12650 PF12680 SnoaL-like domain APT56_12655 PF01266 FAD dependent oxidoreductase APT56_12660 PF02395 Immunoglobulin A1 protease APT56_12665 PF00155 Aminotransferase class I and II APT56_12665 PF00392 Bacterial regulatory proteins, gntR family APT56_12670 PF13343 Bacterial extracellular solute-binding protein APT56_12675 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12680 PF00005 ABC transporter APT56_12685 PF09084 NMT1/THI5 like APT56_12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_12690 PF03466 LysR substrate binding domain APT56_12695 PF00892 EamA-like transporter family APT56_12700 PF01227 GTP cyclohydrolase I APT56_12705 PF00072 Response regulator receiver domain APT56_12705 PF00196 Bacterial regulatory proteins, luxR family APT56_12710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_12710 PF07730 Histidine kinase APT56_12710 PF17200 APT56_12710 APT56_12715 PF02554 APT56_12715 APT56_12715 PF13722 APT56_12715 APT56_12720 PF04328 APT56_12720 APT56_12725 PF00892 EamA-like transporter family APT56_12730 PF00155 Aminotransferase class I and II APT56_12730 PF00392 Bacterial regulatory proteins, gntR family APT56_12735 PF12832 MFS_1 like family APT56_12745 PF00440 Bacterial regulatory proteins, tetR family APT56_12750 PF00210 Ferritin-like domain APT56_12760 PF03797 Autotransporter beta-domain APT56_12765 PF01625 Peptide methionine sulfoxide reductase APT56_12770 PF01641 SelR domain APT56_12780 PF00174 Oxidoreductase molybdopterin binding domain APT56_12785 PF01292 Prokaryotic cytochrome b561 APT56_12790 PF00072 Response regulator receiver domain APT56_12790 PF00486 Transcriptional regulatory protein, C terminal APT56_12795 PF00512 His Kinase A (phospho-acceptor) domain APT56_12795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_12800 PF03060 Nitronate monooxygenase APT56_12805 PF01970 APT56_12805 APT56_12815 PF00368 Hydroxymethylglutaryl-coenzyme A reductase APT56_12820 PF00155 Aminotransferase class I and II APT56_12820 PF00392 Bacterial regulatory proteins, gntR family APT56_12825 PF04055 Radical SAM superfamily APT56_12825 PF13353 4Fe-4S single cluster domain APT56_12830 PF13597 Anaerobic ribonucleoside-triphosphate reductase APT56_12835 PF03477 ATP cone domain APT56_12835 PF13597 Anaerobic ribonucleoside-triphosphate reductase APT56_12840 PF11804 APT56_12840 APT56_12845 PF03929 APT56_12845 APT56_12850 PF03401 Tripartite tricarboxylate transporter family receptor APT56_12855 PF01546 Peptidase family M20/M25/M40 APT56_12855 PF07687 Peptidase dimerisation domain APT56_12860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_12860 PF03466 LysR substrate binding domain APT56_12865 PF00873 AcrB/AcrD/AcrF family APT56_12870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_12870 PF03466 LysR substrate binding domain APT56_12875 PF01494 FAD binding domain APT56_12885 PF05940 APT56_12885 APT56_12890 PF07690 Major Facilitator Superfamily APT56_12895 PF07690 Major Facilitator Superfamily APT56_12900 PF00384 Molybdopterin oxidoreductase APT56_12900 PF01568 Molydopterin dinucleotide binding domain APT56_12900 PF14710 Respiratory nitrate reductase alpha N-terminal APT56_12905 PF13247 4Fe-4S dicluster domain APT56_12905 PF14711 Respiratory nitrate reductase beta C-terminal APT56_12910 PF02613 Nitrate reductase delta subunit APT56_12915 PF02665 Nitrate reductase gamma subunit APT56_12920 PF00639 PPIC-type PPIASE domain APT56_12925 PF04055 Radical SAM superfamily APT56_12925 PF06463 Molybdenum Cofactor Synthesis C APT56_12925 PF13353 4Fe-4S single cluster domain APT56_12930 PF00484 Carbonic anhydrase APT56_12935 PF03205 Molybdopterin guanine dinucleotide synthesis protein B APT56_12940 PF00672 HAMP domain APT56_12940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_12940 PF07730 Histidine kinase APT56_12940 PF13185 GAF domain APT56_12940 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APT56_12945 PF00072 Response regulator receiver domain APT56_12945 PF00196 Bacterial regulatory proteins, luxR family APT56_12950 PF01136 APT56_12950 APT56_12955 PF01136 APT56_12955 APT56_12960 PF02036 SCP-2 sterol transfer family APT56_12965 PF00528 Binding-protein-dependent transport system inner membrane component APT56_12970 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_12975 PF00266 Aminotransferase class-V APT56_12980 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_12985 PF12697 Alpha/beta hydrolase family APT56_12990 PF12833 Helix-turn-helix domain APT56_12990 PF12852 Cupin APT56_12995 PF02627 Carboxymuconolactone decarboxylase family APT56_13000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_13005 PF00005 ABC transporter APT56_13010 PF13379 NMT1-like family APT56_13015 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13030 PF00392 Bacterial regulatory proteins, gntR family APT56_13030 PF07729 FCD domain APT56_13035 PF00920 Dehydratase family APT56_13040 PF03737 Demethylmenaquinone methyltransferase APT56_13045 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13050 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13055 PF00701 Dihydrodipicolinate synthetase family APT56_13060 PF00392 Bacterial regulatory proteins, gntR family APT56_13060 PF07729 FCD domain APT56_13065 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13075 PF03466 LysR substrate binding domain APT56_13090 PF13649 Methyltransferase domain APT56_13100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13100 PF03466 LysR substrate binding domain APT56_13105 PF01042 Endoribonuclease L-PSP APT56_13120 PF13827 APT56_13120 APT56_13125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13125 PF03466 LysR substrate binding domain APT56_13130 PF01470 Pyroglutamyl peptidase APT56_13135 PF12697 Alpha/beta hydrolase family APT56_13140 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13145 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_13150 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_13155 PF01565 FAD binding domain APT56_13155 PF02913 FAD linked oxidases, C-terminal domain APT56_13160 PF00155 Aminotransferase class I and II APT56_13165 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13170 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13175 PF00005 ABC transporter APT56_13185 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_13195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13195 PF03466 LysR substrate binding domain APT56_13200 PF00581 Rhodanese-like domain APT56_13205 PF00581 Rhodanese-like domain APT56_13210 PF04143 APT56_13210 APT56_13220 PF16357 APT56_13220 APT56_13235 PF04773 FecR protein APT56_13235 PF16220 APT56_13235 APT56_13240 PF04542 Sigma-70 region 2 APT56_13240 PF08281 Sigma-70, region 4 APT56_13255 PF03928 Domain of unknown function (DUF336) APT56_13260 PF00072 Response regulator receiver domain APT56_13260 PF00196 Bacterial regulatory proteins, luxR family APT56_13265 PF00512 His Kinase A (phospho-acceptor) domain APT56_13265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_13270 PF00571 CBS domain APT56_13270 PF04982 APT56_13270 APT56_13275 PF12802 MarR family APT56_13280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13280 PF03466 LysR substrate binding domain APT56_13285 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT56_13295 PF00753 Metallo-beta-lactamase superfamily APT56_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13300 PF03466 LysR substrate binding domain APT56_13305 PF00501 AMP-binding enzyme APT56_13305 PF13193 AMP-binding enzyme C-terminal domain APT56_13310 PF07690 Major Facilitator Superfamily APT56_13325 PF08534 Redoxin APT56_13330 PF03060 Nitronate monooxygenase APT56_13335 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_13340 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13345 PF00005 ABC transporter APT56_13350 PF00005 ABC transporter APT56_13355 PF01032 FecCD transport family APT56_13360 PF01032 FecCD transport family APT56_13365 PF01497 Periplasmic binding protein APT56_13370 PF00593 TonB dependent receptor APT56_13370 PF07715 TonB-dependent Receptor Plug Domain APT56_13375 PF07690 Major Facilitator Superfamily APT56_13380 PF12833 Helix-turn-helix domain APT56_13385 PF00355 Rieske [2Fe-2S] domain APT56_13385 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_13395 PF04183 IucA / IucC family APT56_13395 PF06276 Ferric iron reductase FhuF-like transporter APT56_13400 PF13523 Acetyltransferase (GNAT) domain APT56_13405 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) APT56_13410 PF00005 ABC transporter APT56_13415 PF03649 APT56_13415 APT56_13420 PF09335 APT56_13420 APT56_13425 PF03971 Monomeric isocitrate dehydrogenase APT56_13430 PF00486 Transcriptional regulatory protein, C terminal APT56_13435 PF00291 Pyridoxal-phosphate dependent enzyme APT56_13435 PF00585 C-terminal regulatory domain of Threonine dehydratase APT56_13440 PF00005 ABC transporter APT56_13445 PF00127 Copper binding proteins, plastocyanin/azurin family APT56_13450 PF01032 FecCD transport family APT56_13455 PF01497 Periplasmic binding protein APT56_13460 PF00072 Response regulator receiver domain APT56_13460 PF00486 Transcriptional regulatory protein, C terminal APT56_13465 PF00512 His Kinase A (phospho-acceptor) domain APT56_13465 PF00672 HAMP domain APT56_13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_13470 PF00593 TonB dependent receptor APT56_13470 PF07715 TonB-dependent Receptor Plug Domain APT56_13475 PF00005 ABC transporter APT56_13480 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13485 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13490 PF00155 Aminotransferase class I and II APT56_13495 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_13500 PF00392 Bacterial regulatory proteins, gntR family APT56_13500 PF07729 FCD domain APT56_13505 PF00701 Dihydrodipicolinate synthetase family APT56_13510 PF00171 Aldehyde dehydrogenase family APT56_13515 PF00701 Dihydrodipicolinate synthetase family APT56_13520 PF04295 APT56_13520 APT56_13520 PF08666 SAF domain APT56_13525 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13530 PF04352 ProQ/FINO family APT56_13540 PF04234 CopC domain APT56_13545 PF05425 APT56_13545 APT56_13555 PF00117 Glutamine amidotransferase class-I APT56_13560 PF00296 Luciferase-like monooxygenase APT56_13565 PF00005 ABC transporter APT56_13570 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13575 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13580 PF09084 NMT1/THI5 like APT56_13585 PF04909 Amidohydrolase APT56_13590 PF00149 Calcineurin-like phosphoesterase APT56_13590 PF13385 Concanavalin A-like lectin/glucanases superfamily APT56_13595 PF00296 Luciferase-like monooxygenase APT56_13600 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13605 PF00528 Binding-protein-dependent transport system inner membrane component APT56_13610 PF13531 Bacterial extracellular solute-binding protein APT56_13615 PF11162 APT56_13615 APT56_13620 PF00593 TonB dependent receptor APT56_13620 PF07715 TonB-dependent Receptor Plug Domain APT56_13635 PF04542 Sigma-70 region 2 APT56_13635 PF08281 Sigma-70, region 4 APT56_13640 PF04773 FecR protein APT56_13640 PF16220 APT56_13640 APT56_13645 PF00593 TonB dependent receptor APT56_13645 PF07660 Secretin and TonB N terminus short domain APT56_13645 PF07715 TonB-dependent Receptor Plug Domain APT56_13655 PF00128 Alpha amylase, catalytic domain APT56_13660 PF02446 4-alpha-glucanotransferase APT56_13665 PF00128 Alpha amylase, catalytic domain APT56_13665 PF11941 Domain of unknown function (DUF3459) APT56_13670 PF00128 Alpha amylase, catalytic domain APT56_13670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT56_13675 PF00128 Alpha amylase, catalytic domain APT56_13675 PF02806 Alpha amylase, C-terminal all-beta domain APT56_13675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT56_13680 PF00128 Alpha amylase, catalytic domain APT56_13680 PF16657 APT56_13680 APT56_13685 PF00128 Alpha amylase, catalytic domain APT56_13685 PF11896 Domain of unknown function (DUF3416) APT56_13690 PF00534 Glycosyl transferases group 1 APT56_13690 PF08323 Starch synthase catalytic domain APT56_13695 PF03706 APT56_13695 APT56_13700 PF13091 PLD-like domain APT56_13705 PF03372 Endonuclease/Exonuclease/phosphatase family APT56_13710 PF01699 Sodium/calcium exchanger protein APT56_13715 PF04120 APT56_13715 APT56_13720 PF05974 Domain of unknown function (DUF892) APT56_13730 PF00342 Phosphoglucose isomerase APT56_13740 PF00924 Mechanosensitive ion channel APT56_13755 PF13628 APT56_13755 APT56_13760 PF00483 Nucleotidyl transferase APT56_13765 PF00199 Catalase APT56_13765 PF01965 DJ-1/PfpI family APT56_13765 PF06628 Catalase-related immune-responsive APT56_13770 PF00582 Universal stress protein family APT56_13775 PF00582 Universal stress protein family APT56_13780 PF00582 Universal stress protein family APT56_13790 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APT56_13790 PF09363 XFP C-terminal domain APT56_13790 PF09364 XFP N-terminal domain APT56_13795 PF00753 Metallo-beta-lactamase superfamily APT56_13795 PF07521 RNA-metabolising metallo-beta-lactamase APT56_13795 PF10996 Beta-Casp domain APT56_13800 PF00571 CBS domain APT56_13810 PF00989 PAS fold APT56_13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_13810 PF07730 Histidine kinase APT56_13815 PF00072 Response regulator receiver domain APT56_13815 PF00196 Bacterial regulatory proteins, luxR family APT56_13820 PF00027 Cyclic nucleotide-binding domain APT56_13820 PF13545 Crp-like helix-turn-helix domain APT56_13825 PF09361 APT56_13825 APT56_13830 PF02308 APT56_13830 APT56_13830 PF13194 APT56_13830 APT56_13835 PF00582 Universal stress protein family APT56_13840 PF01566 APT56_13840 APT56_13850 PF02867 Ribonucleotide reductase, barrel domain APT56_13855 PF05235 CHAD domain APT56_13860 PF04972 BON domain APT56_13865 PF00011 Hsp20/alpha crystallin family APT56_13885 PF00043 Glutathione S-transferase, C-terminal domain APT56_13885 PF02798 Glutathione S-transferase, N-terminal domain APT56_13890 PF01810 APT56_13890 APT56_13895 PF00440 Bacterial regulatory proteins, tetR family APT56_13895 PF14246 AefR-like transcriptional repressor, C-terminal region APT56_13900 PF12706 Beta-lactamase superfamily domain APT56_13910 PF06039 APT56_13910 APT56_13920 PF00083 Sugar (and other) transporter APT56_13925 PF00850 Histone deacetylase domain APT56_13930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_13930 PF03466 LysR substrate binding domain APT56_13935 PF02798 Glutathione S-transferase, N-terminal domain APT56_13935 PF14497 Glutathione S-transferase, C-terminal domain APT56_13945 PF12802 MarR family APT56_13950 PF13460 NADH(P)-binding APT56_13950 PF13781 APT56_13950 APT56_13955 PF10027 APT56_13955 APT56_13960 PF03401 Tripartite tricarboxylate transporter family receptor APT56_13965 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_13970 PF13577 SnoaL-like domain APT56_13975 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_13975 PF14759 Reductase C-terminal APT56_13980 PF00355 Rieske [2Fe-2S] domain APT56_13985 PF00355 Rieske [2Fe-2S] domain APT56_13985 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_13990 PF00866 Ring hydroxylating beta subunit APT56_13995 PF02311 AraC-like ligand binding domain APT56_14000 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT56_14005 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_14005 PF10370 Domain of unknown function (DUF2437) APT56_14010 PF00392 Bacterial regulatory proteins, gntR family APT56_14010 PF07729 FCD domain APT56_14020 PF01266 FAD dependent oxidoreductase APT56_14025 PF01042 Endoribonuclease L-PSP APT56_14030 PF07171 MlrC C-terminus APT56_14030 PF07364 Protein of unknown function (DUF1485) APT56_14035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_14040 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14045 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14045 PF12911 APT56_14045 APT56_14050 PF00005 ABC transporter APT56_14050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_14055 PF00005 ABC transporter APT56_14055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_14060 PF07969 Amidohydrolase family APT56_14065 PF01381 Helix-turn-helix APT56_14065 PF07883 Cupin domain APT56_14070 PF13520 Amino acid permease APT56_14075 PF13847 Methyltransferase domain APT56_14080 PF10005 APT56_14080 APT56_14080 PF15887 APT56_14080 APT56_14085 PF02016 LD-carboxypeptidase APT56_14090 PF01479 S4 domain APT56_14095 PF01594 APT56_14095 APT56_14100 PF11740 APT56_14100 APT56_14115 PF08238 Sel1 repeat APT56_14120 PF03797 Autotransporter beta-domain APT56_14120 PF12951 APT56_14120 APT56_14125 PF03212 Pertactin APT56_14125 PF03797 Autotransporter beta-domain APT56_14145 PF05988 APT56_14145 APT56_14150 PF00589 Phage integrase family APT56_14155 PF00990 GGDEF domain APT56_14155 PF02743 Cache domain APT56_14160 PF07681 APT56_14160 APT56_14165 PF00376 MerR family regulatory protein APT56_14165 PF09278 MerR, DNA binding APT56_14170 PF00990 GGDEF domain APT56_14175 PF00440 Bacterial regulatory proteins, tetR family APT56_14180 PF07080 Protein of unknown function (DUF1348) APT56_14185 PF07331 APT56_14185 APT56_14190 PF01970 APT56_14190 APT56_14195 PF10262 Rdx family APT56_14200 PF07690 Major Facilitator Superfamily APT56_14205 PF04657 APT56_14205 APT56_14210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14210 PF03466 LysR substrate binding domain APT56_14215 PF00378 Enoyl-CoA hydratase/isomerase family APT56_14220 PF02417 APT56_14220 APT56_14225 PF00512 His Kinase A (phospho-acceptor) domain APT56_14225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_14230 PF12951 APT56_14230 APT56_14235 PF00571 CBS domain APT56_14235 PF03471 Transporter associated domain APT56_14235 PF03741 APT56_14235 APT56_14240 PF13618 APT56_14240 APT56_14245 PF00732 GMC oxidoreductase APT56_14245 PF01494 FAD binding domain APT56_14245 PF05199 GMC oxidoreductase APT56_14250 PF00034 Cytochrome c APT56_14250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_14260 PF02308 APT56_14260 APT56_14265 PF11162 APT56_14265 APT56_14270 PF00593 TonB dependent receptor APT56_14270 PF07715 TonB-dependent Receptor Plug Domain APT56_14275 PF05359 APT56_14275 APT56_14285 PF00563 EAL domain APT56_14290 PF12805 APT56_14290 APT56_14290 PF13515 APT56_14290 APT56_14295 PF00582 Universal stress protein family APT56_14300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_14300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_14305 PF03929 APT56_14305 APT56_14310 PF01965 DJ-1/PfpI family APT56_14315 PF01028 Eukaryotic DNA topoisomerase I, catalytic core APT56_14325 PF05957 APT56_14325 APT56_14330 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_14335 PF13628 APT56_14335 APT56_14345 PF04070 APT56_14345 APT56_14360 PF00072 Response regulator receiver domain APT56_14360 PF00158 Sigma-54 interaction domain APT56_14360 PF02954 Bacterial regulatory protein, Fis family APT56_14365 PF00158 Sigma-54 interaction domain APT56_14365 PF02954 Bacterial regulatory protein, Fis family APT56_14370 PF00309 APT56_14370 APT56_14370 PF04552 Sigma-54, DNA binding domain APT56_14370 PF04963 Sigma-54 factor, core binding domain APT56_14380 PF00072 Response regulator receiver domain APT56_14380 PF00512 His Kinase A (phospho-acceptor) domain APT56_14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_14380 PF08447 PAS fold APT56_14380 PF08448 PAS fold APT56_14380 PF13185 GAF domain APT56_14385 PF10087 APT56_14385 APT56_14390 PF05247 Flagellar transcriptional activator (FlhD) APT56_14395 PF07690 Major Facilitator Superfamily APT56_14400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14400 PF03466 LysR substrate binding domain APT56_14405 PF13598 APT56_14405 APT56_14405 PF13600 APT56_14405 APT56_14410 PF00072 Response regulator receiver domain APT56_14410 PF00563 EAL domain APT56_14415 PF00793 DAHP synthetase I family APT56_14420 PF01266 FAD dependent oxidoreductase APT56_14425 PF13302 Acetyltransferase (GNAT) domain APT56_14435 PF00072 Response regulator receiver domain APT56_14435 PF00486 Transcriptional regulatory protein, C terminal APT56_14440 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_14445 PF00005 ABC transporter APT56_14445 PF12848 ABC transporter APT56_14450 PF12833 Helix-turn-helix domain APT56_14450 PF12852 Cupin APT56_14455 PF02666 APT56_14455 APT56_14465 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) APT56_14470 PF13503 APT56_14470 APT56_14475 PF05954 Phage late control gene D protein (GPD) APT56_14475 PF10106 APT56_14475 APT56_14475 PF13296 APT56_14475 APT56_14480 PF01070 FMN-dependent dehydrogenase APT56_14485 PF00149 Calcineurin-like phosphoesterase APT56_14490 PF01037 AsnC family APT56_14490 PF13404 AsnC-type helix-turn-helix domain APT56_14495 PF07690 Major Facilitator Superfamily APT56_14500 PF00989 PAS fold APT56_14500 PF00990 GGDEF domain APT56_14505 PF03180 NLPA lipoprotein APT56_14510 PF00491 Arginase family APT56_14515 PF01614 Bacterial transcriptional regulator APT56_14515 PF09339 IclR helix-turn-helix domain APT56_14520 PF13458 Periplasmic binding protein APT56_14525 PF00107 Zinc-binding dehydrogenase APT56_14525 PF08240 Alcohol dehydrogenase GroES-like domain APT56_14530 PF04241 APT56_14530 APT56_14535 PF00892 EamA-like transporter family APT56_14540 PF13417 Glutathione S-transferase, N-terminal domain APT56_14545 PF07995 Glucose / Sorbosone dehydrogenase APT56_14550 PF00043 Glutathione S-transferase, C-terminal domain APT56_14550 PF02798 Glutathione S-transferase, N-terminal domain APT56_14555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14555 PF03466 LysR substrate binding domain APT56_14560 PF03401 Tripartite tricarboxylate transporter family receptor APT56_14565 PF07969 Amidohydrolase family APT56_14570 PF01177 Asp/Glu/Hydantoin racemase APT56_14575 PF07007 Protein of unknown function (DUF1311) APT56_14580 PF00005 ABC transporter APT56_14585 PF00005 ABC transporter APT56_14585 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_14590 PF02653 APT56_14590 APT56_14590 PF11862 APT56_14590 APT56_14595 PF02653 APT56_14595 APT56_14600 PF13458 Periplasmic binding protein APT56_14605 PF02592 APT56_14605 APT56_14610 PF03807 NADP oxidoreductase coenzyme F420-dependent APT56_14610 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT56_14615 PF13416 Bacterial extracellular solute-binding protein APT56_14620 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14625 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14630 PF00005 ABC transporter APT56_14630 PF08402 TOBE domain APT56_14635 PF06629 APT56_14635 APT56_14640 PF00144 Beta-lactamase APT56_14645 PF00512 His Kinase A (phospho-acceptor) domain APT56_14645 PF00672 HAMP domain APT56_14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_14650 PF00072 Response regulator receiver domain APT56_14650 PF00486 Transcriptional regulatory protein, C terminal APT56_14655 PF13458 Periplasmic binding protein APT56_14660 PF06821 Serine hydrolase APT56_14665 PF00544 Pectate lyase APT56_14685 PF01061 APT56_14685 APT56_14690 PF02563 Polysaccharide biosynthesis/export protein APT56_14695 PF00534 Glycosyl transferases group 1 APT56_14695 PF13439 Glycosyltransferase Family 4 APT56_14705 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT56_14705 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT56_14705 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT56_14710 PF00210 Ferritin-like domain APT56_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14715 PF03466 LysR substrate binding domain APT56_14720 PF00270 DEAD/DEAH box helicase APT56_14720 PF00271 Helicase conserved C-terminal domain APT56_14720 PF17191 APT56_14720 APT56_14725 PF01042 Endoribonuclease L-PSP APT56_14740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14740 PF03466 LysR substrate binding domain APT56_14745 PF07287 APT56_14745 APT56_14755 PF03401 Tripartite tricarboxylate transporter family receptor APT56_14760 PF00175 Oxidoreductase NAD-binding domain APT56_14760 PF00970 Oxidoreductase FAD-binding domain APT56_14765 PF13343 Bacterial extracellular solute-binding protein APT56_14770 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14775 PF00005 ABC transporter APT56_14780 PF03401 Tripartite tricarboxylate transporter family receptor APT56_14785 PF01139 tRNA-splicing ligase RtcB APT56_14790 PF00472 RF-1 domain APT56_14795 PF02678 Pirin APT56_14795 PF05726 Pirin C-terminal cupin domain APT56_14800 PF02678 Pirin APT56_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_14805 PF03466 LysR substrate binding domain APT56_14810 PF00072 Response regulator receiver domain APT56_14810 PF00158 Sigma-54 interaction domain APT56_14810 PF02954 Bacterial regulatory protein, Fis family APT56_14815 PF00512 His Kinase A (phospho-acceptor) domain APT56_14815 PF00989 PAS fold APT56_14815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_14820 PF00120 Glutamine synthetase, catalytic domain APT56_14820 PF03951 Glutamine synthetase, beta-Grasp domain APT56_14825 PF04055 Radical SAM superfamily APT56_14825 PF06969 HemN C-terminal domain APT56_14830 PF01725 Ham1 family APT56_14835 PF00563 EAL domain APT56_14835 PF00571 CBS domain APT56_14835 PF00990 GGDEF domain APT56_14855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_14855 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_14855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_14860 PF03972 MmgE/PrpD family APT56_14865 PF01138 3' exoribonuclease family, domain 1 APT56_14865 PF03725 3' exoribonuclease family, domain 2 APT56_14870 PF03755 APT56_14870 APT56_14870 PF08340 APT56_14870 APT56_14875 PF00324 Amino acid permease APT56_14880 PF01048 Phosphorylase superfamily APT56_14880 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus APT56_14890 PF00593 TonB dependent receptor APT56_14890 PF07715 TonB-dependent Receptor Plug Domain APT56_14895 PF00877 NlpC/P60 family APT56_14905 PF00106 short chain dehydrogenase APT56_14910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_14915 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_14920 PF00625 Guanylate kinase APT56_14925 PF01192 RNA polymerase Rpb6 APT56_14930 PF02824 TGS domain APT56_14930 PF04607 Region found in RelA / SpoT proteins APT56_14930 PF13291 ACT domain APT56_14930 PF13328 HD domain APT56_14935 PF00005 ABC transporter APT56_14940 PF00528 Binding-protein-dependent transport system inner membrane component APT56_14945 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_14950 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase APT56_14955 PF01968 Hydantoinase/oxoprolinase APT56_14955 PF02538 APT56_14955 APT56_14955 PF05378 APT56_14955 APT56_14960 PF13463 Winged helix DNA-binding domain APT56_14965 PF00293 NUDIX domain APT56_14965 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain APT56_14965 PF09297 NADH pyrophosphatase zinc ribbon domain APT56_14970 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_14975 PF04290 APT56_14975 APT56_14980 PF06808 APT56_14980 APT56_14985 PF13609 Gram-negative porin APT56_14990 PF00005 ABC transporter APT56_14995 PF00005 ABC transporter APT56_14995 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_15000 PF02653 APT56_15000 APT56_15005 PF02653 APT56_15005 APT56_15010 PF13458 Periplasmic binding protein APT56_15015 PF07286 Protein of unknown function (DUF1445) APT56_15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15020 PF03466 LysR substrate binding domain APT56_15025 PF01425 Amidase APT56_15030 PF11010 APT56_15030 APT56_15035 PF06808 APT56_15035 APT56_15040 PF04290 APT56_15040 APT56_15045 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15050 PF03466 LysR substrate binding domain APT56_15055 PF00892 EamA-like transporter family APT56_15060 PF07055 Enoyl reductase FAD binding domain APT56_15060 PF12241 Trans-2-enoyl-CoA reductase catalytic region APT56_15060 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase APT56_15065 PF12710 haloacid dehalogenase-like hydrolase APT56_15070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15070 PF03466 LysR substrate binding domain APT56_15075 PF00005 ABC transporter APT56_15075 PF08402 TOBE domain APT56_15080 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15085 PF13343 Bacterial extracellular solute-binding protein APT56_15090 PF00005 ABC transporter APT56_15095 PF13472 GDSL-like Lipase/Acylhydrolase family APT56_15100 PF00639 PPIC-type PPIASE domain APT56_15100 PF13624 SurA N-terminal domain APT56_15105 PF01546 Peptidase family M20/M25/M40 APT56_15105 PF07687 Peptidase dimerisation domain APT56_15110 PF03009 Glycerophosphoryl diester phosphodiesterase family APT56_15115 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ APT56_15120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_15120 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_15125 PF00462 Glutaredoxin APT56_15125 PF08534 Redoxin APT56_15130 PF00403 Heavy-metal-associated domain APT56_15135 PF00122 E1-E2 ATPase APT56_15135 PF00403 Heavy-metal-associated domain APT56_15135 PF00702 haloacid dehalogenase-like hydrolase APT56_15140 PF00376 MerR family regulatory protein APT56_15140 PF09278 MerR, DNA binding APT56_15145 PF05958 tRNA (Uracil-5-)-methyltransferase APT56_15150 PF09694 APT56_15150 APT56_15160 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB APT56_15165 PF01476 LysM domain APT56_15165 PF01551 Peptidase family M23 APT56_15170 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) APT56_15175 PF01975 Survival protein SurE APT56_15180 PF02660 APT56_15180 APT56_15185 PF00814 Glycoprotease family APT56_15190 PF00860 Permease family APT56_15195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_15200 PF00296 Luciferase-like monooxygenase APT56_15205 PF00085 Thioredoxin APT56_15210 PF01205 Uncharacterized protein family UPF0029 APT56_15210 PF09186 Domain of unknown function (DUF1949) APT56_15215 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_15220 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15225 PF09084 NMT1/THI5 like APT56_15230 PF00005 ABC transporter APT56_15235 PF07690 Major Facilitator Superfamily APT56_15240 PF00005 ABC transporter APT56_15240 PF12848 ABC transporter APT56_15245 PF02016 LD-carboxypeptidase APT56_15250 PF14437 APT56_15250 APT56_15255 PF12710 haloacid dehalogenase-like hydrolase APT56_15265 PF03334 APT56_15265 APT56_15270 PF04066 APT56_15270 APT56_15275 PF01899 APT56_15275 APT56_15280 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT56_15285 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT56_15290 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT56_15290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT56_15290 PF04039 APT56_15290 APT56_15290 PF13244 APT56_15290 APT56_15295 PF03401 Tripartite tricarboxylate transporter family receptor APT56_15305 PF00892 EamA-like transporter family APT56_15310 PF13476 AAA domain APT56_15315 PF00149 Calcineurin-like phosphoesterase APT56_15320 PF01266 FAD dependent oxidoreductase APT56_15325 PF01037 AsnC family APT56_15325 PF13412 Winged helix-turn-helix DNA-binding APT56_15330 PF04367 APT56_15330 APT56_15335 PF13275 S4 domain APT56_15340 PF04471 Restriction endonuclease APT56_15345 PF10861 APT56_15345 APT56_15355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_15355 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_15355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_15360 PF02082 Transcriptional regulator APT56_15365 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_15385 PF12146 Putative lysophospholipase APT56_15390 PF13609 Gram-negative porin APT56_15400 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_15405 PF00486 Transcriptional regulatory protein, C terminal APT56_15410 PF13663 APT56_15410 APT56_15415 PF01547 Bacterial extracellular solute-binding protein APT56_15420 PF09928 APT56_15420 APT56_15425 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15430 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15435 PF00005 ABC transporter APT56_15435 PF08402 TOBE domain APT56_15440 PF00005 ABC transporter APT56_15440 PF08402 TOBE domain APT56_15445 PF00455 APT56_15445 APT56_15445 PF08220 DeoR-like helix-turn-helix domain APT56_15450 PF01266 FAD dependent oxidoreductase APT56_15450 PF16901 APT56_15450 APT56_15455 PF01966 HD domain APT56_15460 PF01965 DJ-1/PfpI family APT56_15465 PF00107 Zinc-binding dehydrogenase APT56_15465 PF16884 APT56_15465 APT56_15470 PF00440 Bacterial regulatory proteins, tetR family APT56_15475 PF13437 HlyD family secretion protein APT56_15480 PF00005 ABC transporter APT56_15485 PF12698 ABC-2 family transporter protein APT56_15490 PF02321 Outer membrane efflux protein APT56_15495 PF00486 Transcriptional regulatory protein, C terminal APT56_15500 PF04073 Aminoacyl-tRNA editing domain APT56_15505 PF12805 APT56_15505 APT56_15505 PF13515 APT56_15505 APT56_15510 PF05742 APT56_15510 APT56_15515 PF13620 Carboxypeptidase regulatory-like domain APT56_15520 PF01124 MAPEG family APT56_15525 PF02517 CAAX protease self-immunity APT56_15530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT56_15535 PF12840 Helix-turn-helix domain APT56_15540 PF00472 RF-1 domain APT56_15545 PF04055 Radical SAM superfamily APT56_15545 PF13394 4Fe-4S single cluster domain APT56_15550 PF01242 6-pyruvoyl tetrahydropterin synthase APT56_15555 PF12802 MarR family APT56_15560 PF04632 APT56_15560 APT56_15565 PF07869 APT56_15565 APT56_15570 PF13437 HlyD family secretion protein APT56_15570 PF13533 Biotin-lipoyl like APT56_15575 PF02321 Outer membrane efflux protein APT56_15585 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_15585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_15585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_15590 PF03401 Tripartite tricarboxylate transporter family receptor APT56_15595 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_15600 PF01614 Bacterial transcriptional regulator APT56_15600 PF09339 IclR helix-turn-helix domain APT56_15605 PF02230 Phospholipase/Carboxylesterase APT56_15610 PF00324 Amino acid permease APT56_15615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_15615 PF02743 Cache domain APT56_15625 PF00817 impB/mucB/samB family APT56_15630 PF02811 PHP domain APT56_15630 PF07733 Bacterial DNA polymerase III alpha subunit APT56_15630 PF14579 Helix-hairpin-helix motif APT56_15635 PF11720 Peptidase inhibitor I78 family APT56_15640 PF07739 TipAS antibiotic-recognition domain APT56_15640 PF13411 MerR HTH family regulatory protein APT56_15645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15645 PF03466 LysR substrate binding domain APT56_15650 PF00248 Aldo/keto reductase family APT56_15660 PF00156 Phosphoribosyl transferase domain APT56_15660 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT56_15665 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APT56_15670 PF07007 Protein of unknown function (DUF1311) APT56_15675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15675 PF03466 LysR substrate binding domain APT56_15680 PF00005 ABC transporter APT56_15685 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15690 PF00528 Binding-protein-dependent transport system inner membrane component APT56_15695 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_15700 PF00155 Aminotransferase class I and II APT56_15705 PF03737 Demethylmenaquinone methyltransferase APT56_15715 PF13437 HlyD family secretion protein APT56_15720 PF13276 APT56_15720 APT56_15720 PF13683 APT56_15720 APT56_15725 PF01527 Transposase APT56_15730 PF00440 Bacterial regulatory proteins, tetR family APT56_15735 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_15735 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_15740 PF01292 Prokaryotic cytochrome b561 APT56_15745 PF01545 Cation efflux family APT56_15745 PF16916 APT56_15745 APT56_15770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_15770 PF00672 HAMP domain APT56_15770 PF12729 APT56_15770 APT56_15790 PF02190 ATP-dependent protease La (LON) domain APT56_15795 PF02627 Carboxymuconolactone decarboxylase family APT56_15805 PF07171 MlrC C-terminus APT56_15805 PF07364 Protein of unknown function (DUF1485) APT56_15810 PF03861 ANTAR domain APT56_15815 PF13433 Periplasmic binding protein domain APT56_15820 PF00005 ABC transporter APT56_15825 PF00005 ABC transporter APT56_15825 PF02653 APT56_15825 APT56_15830 PF02653 APT56_15830 APT56_15835 PF13458 Periplasmic binding protein APT56_15840 PF00795 Carbon-nitrogen hydrolase APT56_15845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_15850 PF07690 Major Facilitator Superfamily APT56_15855 PF06772 APT56_15855 APT56_15860 PF01614 Bacterial transcriptional regulator APT56_15860 PF09339 IclR helix-turn-helix domain APT56_15865 PF00732 GMC oxidoreductase APT56_15865 PF05199 GMC oxidoreductase APT56_15870 PF00083 Sugar (and other) transporter APT56_15870 PF07690 Major Facilitator Superfamily APT56_15875 PF00248 Aldo/keto reductase family APT56_15880 PF00144 Beta-lactamase APT56_15885 PF03401 Tripartite tricarboxylate transporter family receptor APT56_15890 PF00440 Bacterial regulatory proteins, tetR family APT56_15910 PF04463 APT56_15910 APT56_15920 PF02311 AraC-like ligand binding domain APT56_15920 PF12833 Helix-turn-helix domain APT56_15925 PF01936 NYN domain APT56_15930 PF13302 Acetyltransferase (GNAT) domain APT56_15935 PF01618 APT56_15935 APT56_15940 PF00691 OmpA family APT56_15940 PF13677 APT56_15940 APT56_15945 PF03795 YCII-related domain APT56_15950 PF03795 YCII-related domain APT56_15960 PF04542 Sigma-70 region 2 APT56_15960 PF08281 Sigma-70, region 4 APT56_15965 PF02311 AraC-like ligand binding domain APT56_15965 PF12833 Helix-turn-helix domain APT56_15970 PF00892 EamA-like transporter family APT56_15975 PF00034 Cytochrome c APT56_15980 PF13419 Haloacid dehalogenase-like hydrolase APT56_15985 PF07690 Major Facilitator Superfamily APT56_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_15990 PF03466 LysR substrate binding domain APT56_15995 PF02596 APT56_15995 APT56_16000 PF00583 Acetyltransferase (GNAT) family APT56_16005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16005 PF03466 LysR substrate binding domain APT56_16010 PF02798 Glutathione S-transferase, N-terminal domain APT56_16010 PF14497 Glutathione S-transferase, C-terminal domain APT56_16020 PF01047 MarR family APT56_16025 PF10127 APT56_16025 APT56_16030 PF13302 Acetyltransferase (GNAT) domain APT56_16040 PF00285 Citrate synthase APT56_16040 PF12728 Helix-turn-helix domain APT56_16045 PF02515 CoA-transferase family III APT56_16060 PF13360 PQQ-like domain APT56_16065 PF11828 APT56_16065 APT56_16070 PF05650 APT56_16070 APT56_16075 PF00691 OmpA family APT56_16080 PF11445 APT56_16080 APT56_16085 PF03055 Retinal pigment epithelial membrane protein APT56_16100 PF13503 APT56_16100 APT56_16105 PF05954 Phage late control gene D protein (GPD) APT56_16105 PF10106 APT56_16105 APT56_16105 PF13296 APT56_16105 APT56_16110 PF00004 ATPase family associated with various cellular activities (AAA) APT56_16110 PF02861 Clp amino terminal domain APT56_16110 PF07724 AAA domain (Cdc48 subfamily) APT56_16110 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_16115 PF06996 APT56_16115 APT56_16120 PF05947 APT56_16120 APT56_16125 PF04965 Gene 25-like lysozyme APT56_16130 PF05638 Protein of unknown function (DUF796) APT56_16135 PF05943 APT56_16135 APT56_16140 PF05591 APT56_16140 APT56_16150 PF12790 Type VI secretion lipoprotein APT56_16155 PF05936 APT56_16155 APT56_16160 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) APT56_16180 PF11745 APT56_16180 APT56_16185 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) APT56_16190 PF11745 APT56_16190 APT56_16195 PF13503 APT56_16195 APT56_16200 PF05954 Phage late control gene D protein (GPD) APT56_16200 PF10106 APT56_16200 APT56_16200 PF13296 APT56_16200 APT56_16210 PF13539 D-alanyl-D-alanine carboxypeptidase APT56_16225 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) APT56_16230 PF00691 OmpA family APT56_16230 PF04972 BON domain APT56_16235 PF06812 APT56_16235 APT56_16250 PF11903 APT56_16250 APT56_16255 PF00557 Metallopeptidase family M24 APT56_16260 PF05977 Transmembrane secretion effector APT56_16265 PF00043 Glutathione S-transferase, C-terminal domain APT56_16265 PF13417 Glutathione S-transferase, N-terminal domain APT56_16270 PF00080 Copper/zinc superoxide dismutase (SODC) APT56_16275 PF04286 APT56_16275 APT56_16285 PF00113 Enolase, C-terminal TIM barrel domain APT56_16285 PF03952 Enolase, N-terminal domain APT56_16290 PF09391 Protein of unknown function (DUF2000) APT56_16310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16310 PF03466 LysR substrate binding domain APT56_16315 PF00378 Enoyl-CoA hydratase/isomerase family APT56_16315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_16315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_16320 PF00108 Thiolase, N-terminal domain APT56_16320 PF02803 Thiolase, C-terminal domain APT56_16325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_16325 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_16325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_16335 PF00501 AMP-binding enzyme APT56_16335 PF13193 AMP-binding enzyme C-terminal domain APT56_16340 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16345 PF00291 Pyridoxal-phosphate dependent enzyme APT56_16350 PF00392 Bacterial regulatory proteins, gntR family APT56_16350 PF07729 FCD domain APT56_16355 PF00582 Universal stress protein family APT56_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16360 PF03466 LysR substrate binding domain APT56_16365 PF07690 Major Facilitator Superfamily APT56_16370 PF01047 MarR family APT56_16375 PF07690 Major Facilitator Superfamily APT56_16380 PF00034 Cytochrome c APT56_16380 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_16385 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_16385 PF01799 [2Fe-2S] binding domain APT56_16390 PF01494 FAD binding domain APT56_16395 PF00561 alpha/beta hydrolase fold APT56_16405 PF00857 Isochorismatase family APT56_16410 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT56_16415 PF02625 XdhC and CoxI family APT56_16415 PF13478 XdhC Rossmann domain APT56_16420 PF12804 MobA-like NTP transferase domain APT56_16425 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_16430 PF01037 AsnC family APT56_16430 PF13412 Winged helix-turn-helix DNA-binding APT56_16435 PF13609 Gram-negative porin APT56_16440 PF00005 ABC transporter APT56_16445 PF13343 Bacterial extracellular solute-binding protein APT56_16450 PF00528 Binding-protein-dependent transport system inner membrane component APT56_16455 PF00072 Response regulator receiver domain APT56_16455 PF00990 GGDEF domain APT56_16460 PF00072 Response regulator receiver domain APT56_16460 PF01339 CheB methylesterase APT56_16465 PF00072 Response regulator receiver domain APT56_16465 PF01584 CheW-like domain APT56_16465 PF01627 Hpt domain APT56_16465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_16470 PF01584 CheW-like domain APT56_16475 PF01739 CheR methyltransferase, SAM binding domain APT56_16475 PF13181 Tetratricopeptide repeat APT56_16480 PF01584 CheW-like domain APT56_16485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_16485 PF12729 APT56_16485 APT56_16490 PF01425 Amidase APT56_16495 PF03061 Thioesterase superfamily APT56_16500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16500 PF03466 LysR substrate binding domain APT56_16505 PF07690 Major Facilitator Superfamily APT56_16515 PF06733 DEAD_2 APT56_16515 PF13307 Helicase C-terminal domain APT56_16520 PF08774 VRR-NUC domain APT56_16525 PF13671 AAA domain APT56_16530 PF00583 Acetyltransferase (GNAT) family APT56_16540 PF07007 Protein of unknown function (DUF1311) APT56_16545 PF00034 Cytochrome c APT56_16545 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_16550 PF00732 GMC oxidoreductase APT56_16550 PF05199 GMC oxidoreductase APT56_16555 PF13618 APT56_16555 APT56_16565 PF07690 Major Facilitator Superfamily APT56_16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16570 PF03466 LysR substrate binding domain APT56_16575 PF12833 Helix-turn-helix domain APT56_16580 PF00583 Acetyltransferase (GNAT) family APT56_16585 PF07690 Major Facilitator Superfamily APT56_16590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16590 PF03466 LysR substrate binding domain APT56_16595 PF00376 MerR family regulatory protein APT56_16595 PF09278 MerR, DNA binding APT56_16610 PF09825 APT56_16610 APT56_16630 PF00561 alpha/beta hydrolase fold APT56_16635 PF02082 Transcriptional regulator APT56_16645 PF00106 short chain dehydrogenase APT56_16650 PF06719 APT56_16650 APT56_16650 PF12833 Helix-turn-helix domain APT56_16670 PF00857 Isochorismatase family APT56_16675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16675 PF03466 LysR substrate binding domain APT56_16680 PF12840 Helix-turn-helix domain APT56_16685 PF08240 Alcohol dehydrogenase GroES-like domain APT56_16685 PF13602 Zinc-binding dehydrogenase APT56_16710 PF00805 Pentapeptide repeats (8 copies) APT56_16715 PF00117 Glutamine amidotransferase class-I APT56_16715 PF00958 GMP synthase C terminal domain APT56_16715 PF02540 NAD synthase APT56_16720 PF00478 IMP dehydrogenase / GMP reductase domain APT56_16720 PF00571 CBS domain APT56_16725 PF09998 APT56_16725 APT56_16730 PF04134 APT56_16730 APT56_16745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16745 PF03466 LysR substrate binding domain APT56_16750 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_16755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_16765 PF00583 Acetyltransferase (GNAT) family APT56_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16780 PF03466 LysR substrate binding domain APT56_16785 PF00291 Pyridoxal-phosphate dependent enzyme APT56_16790 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16795 PF01425 Amidase APT56_16810 PF13411 MerR HTH family regulatory protein APT56_16815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16815 PF03466 LysR substrate binding domain APT56_16820 PF01494 FAD binding domain APT56_16820 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) APT56_16825 PF00528 Binding-protein-dependent transport system inner membrane component APT56_16830 PF00528 Binding-protein-dependent transport system inner membrane component APT56_16830 PF12911 APT56_16830 APT56_16835 PF00005 ABC transporter APT56_16835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_16840 PF00005 ABC transporter APT56_16840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_16845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_16850 PF04775 Acyl-CoA thioester hydrolase/BAAT N-terminal region APT56_16850 PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal APT56_16855 PF02627 Carboxymuconolactone decarboxylase family APT56_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16860 PF03466 LysR substrate binding domain APT56_16865 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16870 PF02615 Malate/L-lactate dehydrogenase APT56_16875 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16880 PF00753 Metallo-beta-lactamase superfamily APT56_16885 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_16890 PF13679 APT56_16890 APT56_16905 PF13226 APT56_16905 APT56_16920 PF00593 TonB dependent receptor APT56_16920 PF07715 TonB-dependent Receptor Plug Domain APT56_16925 PF12833 Helix-turn-helix domain APT56_16930 PF04055 Radical SAM superfamily APT56_16960 PF02627 Carboxymuconolactone decarboxylase family APT56_16965 PF03401 Tripartite tricarboxylate transporter family receptor APT56_16970 PF04199 Putative cyclase APT56_16975 PF02515 CoA-transferase family III APT56_16980 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_16985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_16985 PF03466 LysR substrate binding domain APT56_16990 PF00800 Prephenate dehydratase APT56_16995 PF00593 TonB dependent receptor APT56_16995 PF07715 TonB-dependent Receptor Plug Domain APT56_17010 PF01070 FMN-dependent dehydrogenase APT56_17015 PF02515 CoA-transferase family III APT56_17020 PF00378 Enoyl-CoA hydratase/isomerase family APT56_17025 PF02515 CoA-transferase family III APT56_17030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_17030 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_17030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_17035 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17040 PF03466 LysR substrate binding domain APT56_17045 PF04909 Amidohydrolase APT56_17050 PF02627 Carboxymuconolactone decarboxylase family APT56_17055 PF13417 Glutathione S-transferase, N-terminal domain APT56_17060 PF01613 Flavin reductase like domain APT56_17065 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17070 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17080 PF04542 Sigma-70 region 2 APT56_17080 PF08281 Sigma-70, region 4 APT56_17085 PF04773 FecR protein APT56_17085 PF16220 APT56_17085 APT56_17090 PF00593 TonB dependent receptor APT56_17090 PF07715 TonB-dependent Receptor Plug Domain APT56_17100 PF00990 GGDEF domain APT56_17105 PF00593 TonB dependent receptor APT56_17105 PF07715 TonB-dependent Receptor Plug Domain APT56_17115 PF01223 DNA/RNA non-specific endonuclease APT56_17120 PF13460 NADH(P)-binding APT56_17125 PF13202 EF hand APT56_17145 PF08818 Domain of unknown function (DU1801) APT56_17150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT56_17155 PF12697 Alpha/beta hydrolase family APT56_17160 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT56_17165 PF03729 APT56_17165 APT56_17170 PF13387 APT56_17170 APT56_17175 PF00440 Bacterial regulatory proteins, tetR family APT56_17180 PF13578 Methyltransferase domain APT56_17185 PF00072 Response regulator receiver domain APT56_17185 PF00512 His Kinase A (phospho-acceptor) domain APT56_17185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_17185 PF07695 APT56_17185 APT56_17185 PF07696 7TMR-DISM extracellular 2 APT56_17190 PF00072 Response regulator receiver domain APT56_17190 PF12833 Helix-turn-helix domain APT56_17195 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_17195 PF08479 POTRA domain, ShlB-type APT56_17200 PF05860 haemagglutination activity domain APT56_17205 PF07277 APT56_17205 APT56_17210 PF04775 Acyl-CoA thioester hydrolase/BAAT N-terminal region APT56_17210 PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal APT56_17215 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17220 PF07209 APT56_17220 APT56_17225 PF02537 APT56_17225 APT56_17235 PF01546 Peptidase family M20/M25/M40 APT56_17235 PF07687 Peptidase dimerisation domain APT56_17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17240 PF03466 LysR substrate binding domain APT56_17245 PF00561 alpha/beta hydrolase fold APT56_17250 PF03401 Tripartite tricarboxylate transporter family receptor APT56_17260 PF00512 His Kinase A (phospho-acceptor) domain APT56_17260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_17260 PF08521 APT56_17260 APT56_17265 PF00072 Response regulator receiver domain APT56_17265 PF00486 Transcriptional regulatory protein, C terminal APT56_17270 PF06629 APT56_17270 APT56_17275 PF03466 LysR substrate binding domain APT56_17280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_17280 PF00672 HAMP domain APT56_17280 PF02203 Tar ligand binding domain homologue APT56_17285 PF02769 AIR synthase related protein, C-terminal domain APT56_17285 PF13507 CobB/CobQ-like glutamine amidotransferase domain APT56_17290 PF04290 APT56_17290 APT56_17295 PF06808 APT56_17295 APT56_17300 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_17305 PF01272 Transcription elongation factor, GreA/GreB, C-term APT56_17305 PF03449 Transcription elongation factor, N-terminal APT56_17310 PF02811 PHP domain APT56_17315 PF12697 Alpha/beta hydrolase family APT56_17320 PF13238 AAA domain APT56_17330 PF02353 Mycolic acid cyclopropane synthetase APT56_17335 PF00732 GMC oxidoreductase APT56_17335 PF05199 GMC oxidoreductase APT56_17340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17340 PF03466 LysR substrate binding domain APT56_17345 PF13103 TonB C terminal APT56_17350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17350 PF03466 LysR substrate binding domain APT56_17355 PF00083 Sugar (and other) transporter APT56_17360 PF01546 Peptidase family M20/M25/M40 APT56_17360 PF07687 Peptidase dimerisation domain APT56_17365 PF00753 Metallo-beta-lactamase superfamily APT56_17365 PF03772 APT56_17365 APT56_17365 PF13567 APT56_17365 APT56_17370 PF00290 Tryptophan synthase alpha chain APT56_17375 PF00291 Pyridoxal-phosphate dependent enzyme APT56_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17380 PF03466 LysR substrate binding domain APT56_17385 PF00669 Bacterial flagellin N-terminal helical region APT56_17390 PF00700 Bacterial flagellin C-terminal helical region APT56_17395 PF01381 Helix-turn-helix APT56_17400 PF05015 Plasmid maintenance system killer protein APT56_17415 PF00440 Bacterial regulatory proteins, tetR family APT56_17420 PF02525 Flavodoxin-like fold APT56_17430 PF00166 Chaperonin 10 Kd subunit APT56_17435 PF00118 TCP-1/cpn60 chaperonin family APT56_17440 PF00011 Hsp20/alpha crystallin family APT56_17445 PF00011 Hsp20/alpha crystallin family APT56_17450 PF03797 Autotransporter beta-domain APT56_17450 PF12951 APT56_17450 APT56_17450 PF13018 APT56_17450 APT56_17460 PF00106 short chain dehydrogenase APT56_17465 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_17470 PF00005 ABC transporter APT56_17475 PF08789 APT56_17475 APT56_17490 PF02110 Hydroxyethylthiazole kinase family APT56_17495 PF00593 TonB dependent receptor APT56_17495 PF07715 TonB-dependent Receptor Plug Domain APT56_17500 PF00005 ABC transporter APT56_17505 PF01032 FecCD transport family APT56_17510 PF01032 FecCD transport family APT56_17515 PF01497 Periplasmic binding protein APT56_17520 PF00593 TonB dependent receptor APT56_17520 PF07715 TonB-dependent Receptor Plug Domain APT56_17525 PF00072 Response regulator receiver domain APT56_17525 PF00486 Transcriptional regulatory protein, C terminal APT56_17530 PF00512 His Kinase A (phospho-acceptor) domain APT56_17530 PF00672 HAMP domain APT56_17530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_17535 PF01026 TatD related DNase APT56_17540 PF00005 ABC transporter APT56_17545 PF02687 APT56_17545 APT56_17545 PF12704 MacB-like periplasmic core domain APT56_17555 PF01368 DHH family APT56_17555 PF02272 DHHA1 domain APT56_17560 PF03212 Pertactin APT56_17560 PF03797 Autotransporter beta-domain APT56_17560 PF12951 APT56_17560 APT56_17565 PF07690 Major Facilitator Superfamily APT56_17570 PF00472 RF-1 domain APT56_17570 PF03462 PCRF domain APT56_17575 PF00106 short chain dehydrogenase APT56_17580 PF00152 tRNA synthetases class II (D, K and N) APT56_17580 PF01336 OB-fold nucleic acid binding domain APT56_17590 PF00155 Aminotransferase class I and II APT56_17590 PF00392 Bacterial regulatory proteins, gntR family APT56_17595 PF03594 APT56_17595 APT56_17600 PF01168 Alanine racemase, N-terminal domain APT56_17605 PF00440 Bacterial regulatory proteins, tetR family APT56_17610 PF00108 Thiolase, N-terminal domain APT56_17610 PF02803 Thiolase, C-terminal domain APT56_17615 PF00501 AMP-binding enzyme APT56_17620 PF00005 ABC transporter APT56_17625 PF13458 Periplasmic binding protein APT56_17630 PF02653 APT56_17630 APT56_17635 PF02653 APT56_17635 APT56_17640 PF00005 ABC transporter APT56_17640 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_17645 PF00378 Enoyl-CoA hydratase/isomerase family APT56_17660 PF04384 Iron-sulphur cluster assembly APT56_17665 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_17670 PF00012 Hsp70 protein APT56_17675 PF07743 HSCB C-terminal oligomerisation domain APT56_17680 PF01521 Iron-sulphur cluster biosynthesis APT56_17685 PF01592 NifU-like N terminal domain APT56_17690 PF00266 Aminotransferase class-V APT56_17695 PF02082 Transcriptional regulator APT56_17700 PF01451 Low molecular weight phosphotyrosine protein phosphatase APT56_17705 PF00271 Helicase conserved C-terminal domain APT56_17705 PF02151 UvrB/uvrC motif APT56_17705 PF04851 Type III restriction enzyme, res subunit APT56_17705 PF12344 Ultra-violet resistance protein B APT56_17710 PF00155 Aminotransferase class I and II APT56_17715 PF00717 Peptidase S24-like APT56_17715 PF01726 LexA DNA binding domain APT56_17720 PF00004 ATPase family associated with various cellular activities (AAA) APT56_17720 PF02190 ATP-dependent protease La (LON) domain APT56_17720 PF05362 Lon protease (S16) C-terminal proteolytic domain APT56_17725 PF06689 ClpX C4-type zinc finger APT56_17725 PF07724 AAA domain (Cdc48 subfamily) APT56_17725 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_17730 PF00574 Clp protease APT56_17735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT56_17735 PF05697 Bacterial trigger factor protein (TF) APT56_17735 PF05698 Bacterial trigger factor protein (TF) C-terminus APT56_17740 PF01435 Peptidase family M48 APT56_17745 PF03350 APT56_17745 APT56_17750 PF00313 'Cold-shock' DNA-binding domain APT56_17755 PF06041 Bacterial protein of unknown function (DUF924) APT56_17760 PF00313 'Cold-shock' DNA-binding domain APT56_17775 PF10711 APT56_17775 APT56_17785 PF01042 Endoribonuclease L-PSP APT56_17790 PF01168 Alanine racemase, N-terminal domain APT56_17790 PF14031 Putative serine dehydratase domain APT56_17795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_17795 PF03466 LysR substrate binding domain APT56_17800 PF01042 Endoribonuclease L-PSP APT56_17810 PF00440 Bacterial regulatory proteins, tetR family APT56_17835 PF00793 DAHP synthetase I family APT56_17840 PF12680 SnoaL-like domain APT56_17840 PF13023 HD domain APT56_17850 PF00230 Major intrinsic protein APT56_17855 PF04309 Glycerol-3-phosphate responsive antiterminator APT56_17860 PF01565 FAD binding domain APT56_17860 PF02913 FAD linked oxidases, C-terminal domain APT56_17865 PF01266 FAD dependent oxidoreductase APT56_17865 PF16901 APT56_17865 APT56_17870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT56_17870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT56_17875 PF00083 Sugar (and other) transporter APT56_17880 PF07007 Protein of unknown function (DUF1311) APT56_17905 PF00155 Aminotransferase class I and II APT56_17910 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_17910 PF14602 Hexapeptide repeat of succinyl-transferase APT56_17910 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APT56_17915 PF01546 Peptidase family M20/M25/M40 APT56_17915 PF07687 Peptidase dimerisation domain APT56_17920 PF05175 Methyltransferase small domain APT56_17925 PF00005 ABC transporter APT56_17925 PF12848 ABC transporter APT56_17925 PF16326 APT56_17925 APT56_17930 PF04542 Sigma-70 region 2 APT56_17930 PF08281 Sigma-70, region 4 APT56_17935 PF04773 FecR protein APT56_17935 PF16220 APT56_17935 APT56_17940 PF07715 TonB-dependent Receptor Plug Domain APT56_17945 PF07715 TonB-dependent Receptor Plug Domain APT56_17950 PF03150 Di-haem cytochrome c peroxidase APT56_17955 PF01817 Chorismate mutase type II APT56_17960 PF00580 UvrD/REP helicase N-terminal domain APT56_17960 PF13361 UvrD-like helicase C-terminal domain APT56_17965 PF00487 APT56_17965 APT56_17965 PF01610 APT56_17965 APT56_17975 PF01189 NOL1/NOP2/sun family APT56_17980 PF00551 Formyl transferase APT56_17985 PF01687 Riboflavin kinase APT56_17985 PF06574 FAD synthetase APT56_17990 PF00133 tRNA synthetases class I (I, L, M and V) APT56_17990 PF06827 Zinc finger found in FPG and IleRS APT56_17990 PF08264 Anticodon-binding domain of tRNA APT56_17995 PF01252 APT56_17995 APT56_18000 PF02441 Flavoprotein APT56_18000 PF04127 DNA / pantothenate metabolism flavoprotein APT56_18005 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18010 PF07302 APT56_18010 APT56_18015 PF06675 APT56_18015 APT56_18020 PF03575 Peptidase family S51 APT56_18025 PF01614 Bacterial transcriptional regulator APT56_18025 PF09339 IclR helix-turn-helix domain APT56_18030 PF04307 APT56_18030 APT56_18035 PF09335 APT56_18035 APT56_18045 PF08761 dUTPase APT56_18050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT56_18055 PF00005 ABC transporter APT56_18060 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18065 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18070 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_18075 PF13458 Periplasmic binding protein APT56_18080 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT56_18085 PF02566 OsmC-like protein APT56_18090 PF01566 APT56_18090 APT56_18095 PF02321 Outer membrane efflux protein APT56_18100 PF13437 HlyD family secretion protein APT56_18100 PF13533 Biotin-lipoyl like APT56_18105 PF07869 APT56_18105 APT56_18110 PF04632 APT56_18110 APT56_18115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18115 PF03466 LysR substrate binding domain APT56_18125 PF00440 Bacterial regulatory proteins, tetR family APT56_18130 PF07690 Major Facilitator Superfamily APT56_18135 PF12697 Alpha/beta hydrolase family APT56_18140 PF00005 ABC transporter APT56_18145 PF00005 ABC transporter APT56_18145 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_18150 PF02653 APT56_18150 APT56_18155 PF02653 APT56_18155 APT56_18160 PF13458 Periplasmic binding protein APT56_18165 PF00171 Aldehyde dehydrogenase family APT56_18165 PF01619 Proline dehydrogenase APT56_18165 PF14850 DNA-binding domain of Proline dehydrogenase APT56_18170 PF03886 Protein of unknown function (DUF330) APT56_18175 PF02470 APT56_18175 APT56_18180 PF04403 APT56_18180 APT56_18185 PF00004 ATPase family associated with various cellular activities (AAA) APT56_18185 PF02861 Clp amino terminal domain APT56_18185 PF07724 AAA domain (Cdc48 subfamily) APT56_18185 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_18190 PF00905 Penicillin binding protein transpeptidase domain APT56_18190 PF00912 Transglycosylase APT56_18190 PF06832 APT56_18190 APT56_18195 PF00207 Alpha-2-macroglobulin family APT56_18195 PF01835 MG2 domain APT56_18195 PF07678 A-macroglobulin complement component APT56_18195 PF07703 Alpha-2-macroglobulin family N-terminal region APT56_18195 PF10569 Alpha-macro-globulin thiol-ester bond-forming region APT56_18195 PF11974 Alpha-2-macroglobulin MG1 domain APT56_18200 PF02617 ATP-dependent Clp protease adaptor protein ClpS APT56_18205 PF00313 'Cold-shock' DNA-binding domain APT56_18210 PF02643 Uncharacterized ACR, COG1430 APT56_18215 PF00108 Thiolase, N-terminal domain APT56_18215 PF02803 Thiolase, C-terminal domain APT56_18220 PF00654 Voltage gated chloride channel APT56_18225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_18225 PF00672 HAMP domain APT56_18225 PF12729 APT56_18225 APT56_18230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT56_18230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT56_18240 PF02601 APT56_18240 APT56_18240 PF13742 APT56_18240 APT56_18245 PF01618 APT56_18245 APT56_18250 PF02472 Biopolymer transport protein ExbD/TolR APT56_18255 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APT56_18260 PF07095 Intracellular growth attenuator protein IgaA APT56_18265 PF03966 Trm112p-like protein APT56_18270 PF02348 Cytidylyltransferase APT56_18275 PF00406 Adenylate kinase APT56_18275 PF05191 Adenylate kinase, active site lid APT56_18280 PF00106 short chain dehydrogenase APT56_18285 PF03023 APT56_18285 APT56_18290 PF04773 FecR protein APT56_18290 PF16220 APT56_18290 APT56_18295 PF01649 Ribosomal protein S20 APT56_18300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18300 PF03466 LysR substrate binding domain APT56_18305 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT56_18305 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT56_18310 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_18315 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18320 PF02615 Malate/L-lactate dehydrogenase APT56_18325 PF00392 Bacterial regulatory proteins, gntR family APT56_18325 PF07729 FCD domain APT56_18330 PF00701 Dihydrodipicolinate synthetase family APT56_18335 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_18345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_18355 PF01925 APT56_18355 APT56_18360 PF13481 AAA domain APT56_18370 PF01047 MarR family APT56_18375 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APT56_18380 PF00171 Aldehyde dehydrogenase family APT56_18385 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_18385 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase APT56_18390 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_18395 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_18400 PF03328 HpcH/HpaI aldolase/citrate lyase family APT56_18405 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_18410 PF00842 Alanine racemase, C-terminal domain APT56_18410 PF01168 Alanine racemase, N-terminal domain APT56_18415 PF00494 Squalene/phytoene synthase APT56_18420 PF00494 Squalene/phytoene synthase APT56_18425 PF01593 Flavin containing amine oxidoreductase APT56_18430 PF02537 APT56_18430 APT56_18435 PF03729 APT56_18435 APT56_18440 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18445 PF07969 Amidohydrolase family APT56_18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18450 PF03466 LysR substrate binding domain APT56_18455 PF10604 Polyketide cyclase / dehydrase and lipid transport APT56_18460 PF09370 TIM-barrel signal transduction protein APT56_18465 PF06792 Uncharacterised protein family (UPF0261) APT56_18470 PF00440 Bacterial regulatory proteins, tetR family APT56_18480 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_18485 PF07849 APT56_18485 APT56_18490 PF00004 ATPase family associated with various cellular activities (AAA) APT56_18490 PF02861 Clp amino terminal domain APT56_18490 PF07724 AAA domain (Cdc48 subfamily) APT56_18490 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_18495 PF06094 AIG2-like family APT56_18500 PF00027 Cyclic nucleotide-binding domain APT56_18500 PF13545 Crp-like helix-turn-helix domain APT56_18510 PF00083 Sugar (and other) transporter APT56_18510 PF07690 Major Facilitator Superfamily APT56_18515 PF02627 Carboxymuconolactone decarboxylase family APT56_18520 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_18525 PF00293 NUDIX domain APT56_18530 PF00012 Hsp70 protein APT56_18535 PF13000 APT56_18535 APT56_18540 PF07883 Cupin domain APT56_18545 PF00593 TonB dependent receptor APT56_18545 PF07715 TonB-dependent Receptor Plug Domain APT56_18550 PF00593 TonB dependent receptor APT56_18550 PF07715 TonB-dependent Receptor Plug Domain APT56_18555 PF12833 Helix-turn-helix domain APT56_18560 PF01965 DJ-1/PfpI family APT56_18560 PF12833 Helix-turn-helix domain APT56_18565 PF07690 Major Facilitator Superfamily APT56_18575 PF12843 APT56_18575 APT56_18580 PF00857 Isochorismatase family APT56_18585 PF13302 Acetyltransferase (GNAT) domain APT56_18590 PF00043 Glutathione S-transferase, C-terminal domain APT56_18590 PF13417 Glutathione S-transferase, N-terminal domain APT56_18595 PF02566 OsmC-like protein APT56_18600 PF04828 Glutathione-dependent formaldehyde-activating enzyme APT56_18605 PF01614 Bacterial transcriptional regulator APT56_18605 PF09339 IclR helix-turn-helix domain APT56_18610 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18615 PF04909 Amidohydrolase APT56_18620 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18625 PF03737 Demethylmenaquinone methyltransferase APT56_18630 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT56_18630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT56_18635 PF04199 Putative cyclase APT56_18640 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18645 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18650 PF08450 SMP-30/Gluconolaconase/LRE-like region APT56_18655 PF04170 NlpE N-terminal domain APT56_18660 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_18665 PF09723 APT56_18665 APT56_18670 PF03069 Acetamidase/Formamidase family APT56_18685 PF00266 Aminotransferase class-V APT56_18690 PF01037 AsnC family APT56_18690 PF13412 Winged helix-turn-helix DNA-binding APT56_18695 PF13463 Winged helix DNA-binding domain APT56_18700 PF00005 ABC transporter APT56_18700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_18705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_18710 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18715 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18725 PF13673 Acetyltransferase (GNAT) domain APT56_18730 PF05016 Plasmid stabilisation system protein APT56_18735 PF01402 Ribbon-helix-helix protein, copG family APT56_18740 PF09791 APT56_18740 APT56_18745 PF13302 Acetyltransferase (GNAT) domain APT56_18750 PF13649 Methyltransferase domain APT56_18755 PF01471 Putative peptidoglycan binding domain APT56_18755 PF13406 Transglycosylase SLT domain APT56_18765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18765 PF03466 LysR substrate binding domain APT56_18770 PF00962 Adenosine/AMP deaminase APT56_18775 PF00135 Carboxylesterase family APT56_18780 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18785 PF00440 Bacterial regulatory proteins, tetR family APT56_18790 PF07690 Major Facilitator Superfamily APT56_18795 PF01546 Peptidase family M20/M25/M40 APT56_18795 PF07687 Peptidase dimerisation domain APT56_18800 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18805 PF02608 Basic membrane protein APT56_18810 PF13527 Acetyltransferase (GNAT) domain APT56_18815 PF01958 Domain of unknown function DUF108 APT56_18815 PF03447 Homoserine dehydrogenase, NAD binding domain APT56_18820 PF00005 ABC transporter APT56_18820 PF06472 APT56_18820 APT56_18825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_18825 PF03466 LysR substrate binding domain APT56_18830 PF04909 Amidohydrolase APT56_18835 PF03401 Tripartite tricarboxylate transporter family receptor APT56_18840 PF00563 EAL domain APT56_18840 PF00990 GGDEF domain APT56_18840 PF08448 PAS fold APT56_18845 PF01479 S4 domain APT56_18850 PF03976 Polyphosphate kinase 2 (PPK2) APT56_18865 PF01053 Cys/Met metabolism PLP-dependent enzyme APT56_18870 PF00528 Binding-protein-dependent transport system inner membrane component APT56_18875 PF00005 ABC transporter APT56_18875 PF09383 NIL domain APT56_18880 PF03180 NLPA lipoprotein APT56_18885 PF03653 APT56_18885 APT56_18890 PF00144 Beta-lactamase APT56_18895 PF01266 FAD dependent oxidoreductase APT56_18900 PF01925 APT56_18900 APT56_18905 PF02567 Phenazine biosynthesis-like protein APT56_18910 PF00155 Aminotransferase class I and II APT56_18910 PF00392 Bacterial regulatory proteins, gntR family APT56_18915 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_18915 PF00175 Oxidoreductase NAD-binding domain APT56_18915 PF00557 Metallopeptidase family M24 APT56_18915 PF00970 Oxidoreductase FAD-binding domain APT56_18920 PF08327 Activator of Hsp90 ATPase homolog 1-like protein APT56_18925 PF04261 Dyp-type peroxidase family APT56_18930 PF12697 Alpha/beta hydrolase family APT56_18935 PF12867 DinB superfamily APT56_18940 PF01544 CorA-like Mg2+ transporter protein APT56_18945 PF01965 DJ-1/PfpI family APT56_18945 PF12833 Helix-turn-helix domain APT56_18950 PF07237 Protein of unknown function (DUF1428) APT56_18955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_18960 PF09351 Domain of unknown function (DUF1993) APT56_18965 PF10503 Esterase PHB depolymerase APT56_18975 PF03006 APT56_18975 APT56_18980 PF02311 AraC-like ligand binding domain APT56_18980 PF12833 Helix-turn-helix domain APT56_18985 PF01925 APT56_18985 APT56_18990 PF12146 Putative lysophospholipase APT56_18995 PF01810 APT56_18995 APT56_19000 PF00355 Rieske [2Fe-2S] domain APT56_19000 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT56_19005 PF12146 Putative lysophospholipase APT56_19015 PF00109 Beta-ketoacyl synthase, N-terminal domain APT56_19015 PF00501 AMP-binding enzyme APT56_19015 PF00550 Phosphopantetheine attachment site APT56_19015 PF00551 Formyl transferase APT56_19015 PF00698 Acyl transferase domain APT56_19015 PF02801 Beta-ketoacyl synthase, C-terminal domain APT56_19015 PF02911 Formyl transferase, C-terminal domain APT56_19015 PF07993 Male sterility protein APT56_19015 PF08659 KR domain APT56_19015 PF13602 Zinc-binding dehydrogenase APT56_19015 PF13649 Methyltransferase domain APT56_19015 PF14765 Polyketide synthase dehydratase APT56_19015 PF16197 APT56_19015 APT56_19020 PF00108 Thiolase, N-terminal domain APT56_19020 PF02803 Thiolase, C-terminal domain APT56_19025 PF00501 AMP-binding enzyme APT56_19025 PF13193 AMP-binding enzyme C-terminal domain APT56_19030 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_19035 PF04290 APT56_19035 APT56_19040 PF06808 APT56_19040 APT56_19045 PF00196 Bacterial regulatory proteins, luxR family APT56_19045 PF13426 PAS domain APT56_19050 PF01648 4'-phosphopantetheinyl transferase superfamily APT56_19055 PF00108 Thiolase, N-terminal domain APT56_19055 PF02803 Thiolase, C-terminal domain APT56_19060 PF13767 APT56_19060 APT56_19065 PF13410 Glutathione S-transferase, C-terminal domain APT56_19065 PF13417 Glutathione S-transferase, N-terminal domain APT56_19070 PF01061 APT56_19070 APT56_19075 PF00005 ABC transporter APT56_19080 PF07730 Histidine kinase APT56_19080 PF13426 PAS domain APT56_19085 PF00072 Response regulator receiver domain APT56_19085 PF00196 Bacterial regulatory proteins, luxR family APT56_19090 PF13379 NMT1-like family APT56_19095 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19100 PF00005 ABC transporter APT56_19105 PF02560 Cyanate lyase C-terminal domain APT56_19110 PF08543 Phosphomethylpyrimidine kinase APT56_19120 PF09722 APT56_19120 APT56_19125 PF00639 PPIC-type PPIASE domain APT56_19130 PF10722 Putative bacterial sensory transduction regulator APT56_19140 PF16930 APT56_19140 APT56_19145 PF13103 TonB C terminal APT56_19150 PF02472 Biopolymer transport protein ExbD/TolR APT56_19155 PF01618 APT56_19155 APT56_19155 PF10102 APT56_19155 APT56_19155 PF13385 Concanavalin A-like lectin/glucanases superfamily APT56_19160 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_19160 PF08479 POTRA domain, ShlB-type APT56_19165 PF05860 haemagglutination activity domain APT56_19165 PF12545 APT56_19165 APT56_19170 PF04773 FecR protein APT56_19170 PF16220 APT56_19170 APT56_19175 PF04542 Sigma-70 region 2 APT56_19175 PF08281 Sigma-70, region 4 APT56_19185 PF05860 haemagglutination activity domain APT56_19185 PF12545 APT56_19185 APT56_19190 PF04773 FecR protein APT56_19190 PF16220 APT56_19190 APT56_19195 PF04542 Sigma-70 region 2 APT56_19195 PF08281 Sigma-70, region 4 APT56_19210 PF05899 Protein of unknown function (DUF861) APT56_19215 PF01381 Helix-turn-helix APT56_19215 PF07883 Cupin domain APT56_19220 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_19225 PF00043 Glutathione S-transferase, C-terminal domain APT56_19225 PF13409 Glutathione S-transferase, N-terminal domain APT56_19230 PF03401 Tripartite tricarboxylate transporter family receptor APT56_19235 PF00005 ABC transporter APT56_19235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_19240 PF01968 Hydantoinase/oxoprolinase APT56_19240 PF05378 APT56_19240 APT56_19245 PF02538 APT56_19245 APT56_19250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_19255 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19260 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19260 PF12911 APT56_19260 APT56_19265 PF00892 EamA-like transporter family APT56_19270 PF01380 SIS domain APT56_19270 PF01418 Helix-turn-helix domain, rpiR family APT56_19275 PF02558 Ketopantoate reductase PanE/ApbA APT56_19275 PF08546 Ketopantoate reductase PanE/ApbA C terminal APT56_19280 PF01965 DJ-1/PfpI family APT56_19280 PF12833 Helix-turn-helix domain APT56_19285 PF00581 Rhodanese-like domain APT56_19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_19290 PF03466 LysR substrate binding domain APT56_19295 PF07690 Major Facilitator Superfamily APT56_19300 PF00990 GGDEF domain APT56_19305 PF03212 Pertactin APT56_19305 PF03797 Autotransporter beta-domain APT56_19305 PF12951 APT56_19305 APT56_19315 PF13649 Methyltransferase domain APT56_19320 PF00535 Glycosyl transferase family 2 APT56_19330 PF00356 Bacterial regulatory proteins, lacI family APT56_19330 PF13407 Periplasmic binding protein domain APT56_19335 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_19340 PF04290 APT56_19340 APT56_19340 PF06808 APT56_19340 APT56_19345 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_19350 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain APT56_19350 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain APT56_19355 PF07005 Protein of unknown function, DUF1537 APT56_19355 PF17042 APT56_19355 APT56_19360 PF02625 XdhC and CoxI family APT56_19360 PF13478 XdhC Rossmann domain APT56_19365 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT56_19370 PF00111 2Fe-2S iron-sulfur cluster binding domain APT56_19370 PF01799 [2Fe-2S] binding domain APT56_19375 PF00107 Zinc-binding dehydrogenase APT56_19375 PF08240 Alcohol dehydrogenase GroES-like domain APT56_19380 PF06719 APT56_19380 APT56_19380 PF12833 Helix-turn-helix domain APT56_19395 PF00324 Amino acid permease APT56_19400 PF01068 ATP dependent DNA ligase domain APT56_19400 PF04679 ATP dependent DNA ligase C terminal region APT56_19400 PF13298 DNA polymerase Ligase (LigD) APT56_19405 PF02735 Ku70/Ku80 beta-barrel domain APT56_19410 PF02464 Competence-damaged protein APT56_19415 PF00072 Response regulator receiver domain APT56_19415 PF00158 Sigma-54 interaction domain APT56_19415 PF02954 Bacterial regulatory protein, Fis family APT56_19420 PF00512 His Kinase A (phospho-acceptor) domain APT56_19420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_19425 PF07331 APT56_19425 APT56_19430 PF01970 APT56_19430 APT56_19440 PF07399 APT56_19440 APT56_19445 PF01546 Peptidase family M20/M25/M40 APT56_19445 PF07687 Peptidase dimerisation domain APT56_19450 PF01636 Phosphotransferase enzyme family APT56_19455 PF00202 Aminotransferase class-III APT56_19460 PF00155 Aminotransferase class I and II APT56_19460 PF00392 Bacterial regulatory proteins, gntR family APT56_19465 PF07690 Major Facilitator Superfamily APT56_19470 PF08281 Sigma-70, region 4 APT56_19475 PF04773 FecR protein APT56_19475 PF16220 APT56_19475 APT56_19480 PF00593 TonB dependent receptor APT56_19480 PF07660 Secretin and TonB N terminus short domain APT56_19480 PF07715 TonB-dependent Receptor Plug Domain APT56_19485 PF00593 TonB dependent receptor APT56_19485 PF07715 TonB-dependent Receptor Plug Domain APT56_19490 PF00593 TonB dependent receptor APT56_19490 PF07715 TonB-dependent Receptor Plug Domain APT56_19505 PF00005 ABC transporter APT56_19510 PF01032 FecCD transport family APT56_19515 PF01497 Periplasmic binding protein APT56_19520 PF00027 Cyclic nucleotide-binding domain APT56_19520 PF13545 Crp-like helix-turn-helix domain APT56_19525 PF12697 Alpha/beta hydrolase family APT56_19530 PF00196 Bacterial regulatory proteins, luxR family APT56_19530 PF13487 HD domain APT56_19535 PF00144 Beta-lactamase APT56_19540 PF00561 alpha/beta hydrolase fold APT56_19545 PF09414 RNA ligase APT56_19550 PF01966 HD domain APT56_19550 PF13671 AAA domain APT56_19555 PF01614 Bacterial transcriptional regulator APT56_19555 PF09339 IclR helix-turn-helix domain APT56_19560 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_19565 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_19570 PF08666 SAF domain APT56_19575 PF04295 APT56_19575 APT56_19580 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19585 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19590 PF00005 ABC transporter APT56_19595 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_19600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_19600 PF13378 Enolase C-terminal domain-like APT56_19605 PF00732 GMC oxidoreductase APT56_19605 PF05199 GMC oxidoreductase APT56_19610 PF08501 Shikimate dehydrogenase substrate binding domain APT56_19615 PF02779 Transketolase, pyrimidine binding domain APT56_19615 PF02780 Transketolase, C-terminal domain APT56_19620 PF00456 Transketolase, thiamine diphosphate binding domain APT56_19625 PF00392 Bacterial regulatory proteins, gntR family APT56_19625 PF07729 FCD domain APT56_19630 PF00465 Iron-containing alcohol dehydrogenase APT56_19635 PF05853 Prokaryotic protein of unknown function (DUF849) APT56_19640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_19640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_19645 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_19650 PF13458 Periplasmic binding protein APT56_19655 PF02653 APT56_19655 APT56_19660 PF00005 ABC transporter APT56_19660 PF02653 APT56_19660 APT56_19660 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_19665 PF00005 ABC transporter APT56_19670 PF00107 Zinc-binding dehydrogenase APT56_19670 PF08240 Alcohol dehydrogenase GroES-like domain APT56_19675 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_19680 PF00593 TonB dependent receptor APT56_19680 PF07715 TonB-dependent Receptor Plug Domain APT56_19685 PF02678 Pirin APT56_19685 PF05726 Pirin C-terminal cupin domain APT56_19690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_19690 PF03466 LysR substrate binding domain APT56_19695 PF00330 Aconitase family (aconitate hydratase) APT56_19695 PF00694 Aconitase C-terminal domain APT56_19700 PF00691 OmpA family APT56_19700 PF16234 APT56_19700 APT56_19705 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APT56_19710 PF11062 APT56_19710 APT56_19715 PF10093 APT56_19715 APT56_19720 PF01132 Elongation factor P (EF-P) OB domain APT56_19720 PF08207 Elongation factor P (EF-P) KOW-like domain APT56_19720 PF09285 Elongation factor P, C-terminal APT56_19725 PF06676 APT56_19725 APT56_19730 PF11180 APT56_19730 APT56_19735 PF00158 Sigma-54 interaction domain APT56_19735 PF02954 Bacterial regulatory protein, Fis family APT56_19740 PF13400 APT56_19740 APT56_19745 PF12266 APT56_19745 APT56_19750 PF13432 Tetratricopeptide repeat APT56_19755 PF00482 Type II secretion system (T2SS), protein F APT56_19760 PF00482 Type II secretion system (T2SS), protein F APT56_19765 PF00437 Type II/IV secretion system protein APT56_19775 PF00263 APT56_19775 APT56_19775 PF13629 APT56_19775 APT56_19780 PF08666 SAF domain APT56_19780 PF16976 APT56_19780 APT56_19785 PF07811 APT56_19785 APT56_19790 PF07811 APT56_19790 APT56_19795 PF01478 Type IV leader peptidase family APT56_19800 PF04964 APT56_19800 APT56_19805 PF03707 APT56_19805 APT56_19810 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_19810 PF08479 POTRA domain, ShlB-type APT56_19815 PF15984 APT56_19815 APT56_19820 PF12802 MarR family APT56_19825 PF00005 ABC transporter APT56_19825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_19830 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19835 PF00528 Binding-protein-dependent transport system inner membrane component APT56_19840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_19845 PF00565 Staphylococcal nuclease homologue APT56_19850 PF01544 CorA-like Mg2+ transporter protein APT56_19855 PF00580 UvrD/REP helicase N-terminal domain APT56_19855 PF13361 UvrD-like helicase C-terminal domain APT56_19860 PF01904 Protein of unknown function DUF72 APT56_19865 PF00155 Aminotransferase class I and II APT56_19865 PF00392 Bacterial regulatory proteins, gntR family APT56_19870 PF00202 Aminotransferase class-III APT56_19875 PF00171 Aldehyde dehydrogenase family APT56_19880 PF00459 Inositol monophosphatase family APT56_19885 PF02146 Sir2 family APT56_19890 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_19895 PF16363 APT56_19895 APT56_19900 PF00342 Phosphoglucose isomerase APT56_19905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT56_19905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT56_19905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT56_19905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT56_19910 PF02706 Chain length determinant protein APT56_19910 PF13614 AAA domain APT56_19910 PF13807 APT56_19910 APT56_19915 PF02563 Polysaccharide biosynthesis/export protein APT56_19915 PF10531 SLBB domain APT56_19920 PF02397 APT56_19920 APT56_19920 PF13727 CoA-binding domain APT56_19925 PF00293 NUDIX domain APT56_19930 PF00483 Nucleotidyl transferase APT56_19930 PF01050 Mannose-6-phosphate isomerase APT56_19940 PF16363 APT56_19940 APT56_19945 PF01370 NAD dependent epimerase/dehydratase family APT56_19950 PF01943 APT56_19950 APT56_19955 PF00535 Glycosyl transferase family 2 APT56_19960 PF04932 APT56_19960 APT56_19965 PF00534 Glycosyl transferases group 1 APT56_19965 PF13439 Glycosyltransferase Family 4 APT56_19970 PF00535 Glycosyl transferase family 2 APT56_19975 PF00132 Bacterial transferase hexapeptide (six repeats) APT56_19980 PF00534 Glycosyl transferases group 1 APT56_19980 PF13579 Glycosyl transferase 4-like domain APT56_19985 PF00196 Bacterial regulatory proteins, luxR family APT56_19990 PF00196 Bacterial regulatory proteins, luxR family APT56_20000 PF00440 Bacterial regulatory proteins, tetR family APT56_20005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_20005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_20005 PF09317 APT56_20005 APT56_20010 PF00108 Thiolase, N-terminal domain APT56_20010 PF02803 Thiolase, C-terminal domain APT56_20015 PF00378 Enoyl-CoA hydratase/isomerase family APT56_20015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_20015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_20020 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) APT56_20025 PF00378 Enoyl-CoA hydratase/isomerase family APT56_20025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_20025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_20030 PF00108 Thiolase, N-terminal domain APT56_20030 PF02803 Thiolase, C-terminal domain APT56_20035 PF14539 Domain of unknown function (DUF4442) APT56_20040 PF16036 APT56_20040 APT56_20045 PF00501 AMP-binding enzyme APT56_20045 PF13193 AMP-binding enzyme C-terminal domain APT56_20050 PF00884 Sulfatase APT56_20055 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20060 PF01047 MarR family APT56_20065 PF00005 ABC transporter APT56_20065 PF00664 ABC transporter transmembrane region APT56_20070 PF03812 APT56_20070 APT56_20075 PF07005 Protein of unknown function, DUF1537 APT56_20075 PF17042 APT56_20075 APT56_20080 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT56_20085 PF00392 Bacterial regulatory proteins, gntR family APT56_20085 PF07702 UTRA domain APT56_20090 PF01144 Coenzyme A transferase APT56_20095 PF01144 Coenzyme A transferase APT56_20100 PF00378 Enoyl-CoA hydratase/isomerase family APT56_20105 PF02515 CoA-transferase family III APT56_20110 PF01614 Bacterial transcriptional regulator APT56_20110 PF09339 IclR helix-turn-helix domain APT56_20115 PF05995 Cysteine dioxygenase type I APT56_20120 PF02146 Sir2 family APT56_20135 PF01381 Helix-turn-helix APT56_20145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20145 PF03466 LysR substrate binding domain APT56_20150 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_20155 PF00583 Acetyltransferase (GNAT) family APT56_20170 PF11278 APT56_20170 APT56_20185 PF00440 Bacterial regulatory proteins, tetR family APT56_20190 PF04185 Phosphoesterase family APT56_20195 PF00581 Rhodanese-like domain APT56_20205 PF00072 Response regulator receiver domain APT56_20205 PF00512 His Kinase A (phospho-acceptor) domain APT56_20205 PF01627 Hpt domain APT56_20205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20210 PF00072 Response regulator receiver domain APT56_20210 PF00563 EAL domain APT56_20215 PF00072 Response regulator receiver domain APT56_20215 PF00512 His Kinase A (phospho-acceptor) domain APT56_20215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20235 PF00696 Amino acid kinase family APT56_20235 PF01842 ACT domain APT56_20235 PF13840 ACT domain APT56_20240 PF01171 PP-loop family APT56_20240 PF09179 TilS substrate binding domain APT56_20245 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APT56_20250 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_20255 PF01406 tRNA synthetases class I (C) catalytic domain APT56_20255 PF09190 DALR domain APT56_20265 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT56_20270 PF00149 Calcineurin-like phosphoesterase APT56_20275 PF02673 APT56_20275 APT56_20280 PF00571 CBS domain APT56_20280 PF03471 Transporter associated domain APT56_20280 PF03741 APT56_20280 APT56_20285 PF00459 Inositol monophosphatase family APT56_20290 PF00588 SpoU rRNA Methylase family APT56_20295 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20300 PF01614 Bacterial transcriptional regulator APT56_20300 PF09339 IclR helix-turn-helix domain APT56_20305 PF00924 Mechanosensitive ion channel APT56_20305 PF05552 Conserved TM helix APT56_20310 PF07433 APT56_20310 APT56_20315 PF09375 Imelysin APT56_20320 PF06537 APT56_20320 APT56_20325 PF09375 Imelysin APT56_20330 PF07690 Major Facilitator Superfamily APT56_20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20340 PF03466 LysR substrate binding domain APT56_20345 PF09084 NMT1/THI5 like APT56_20350 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20355 PF00005 ABC transporter APT56_20360 PF13318 APT56_20360 APT56_20365 PF01425 Amidase APT56_20370 PF00392 Bacterial regulatory proteins, gntR family APT56_20370 PF07729 FCD domain APT56_20380 PF11533 Protein of unknown function (DUF3225) APT56_20385 PF03358 NADPH-dependent FMN reductase APT56_20390 PF07311 Dodecin APT56_20400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20400 PF03466 LysR substrate binding domain APT56_20405 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_20410 PF08240 Alcohol dehydrogenase GroES-like domain APT56_20410 PF13602 Zinc-binding dehydrogenase APT56_20420 PF03992 Antibiotic biosynthesis monooxygenase APT56_20430 PF01263 Aldose 1-epimerase APT56_20435 PF13460 NADH(P)-binding APT56_20440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20440 PF03466 LysR substrate binding domain APT56_20450 PF07883 Cupin domain APT56_20455 PF01243 Pyridoxamine 5'-phosphate oxidase APT56_20460 PF00488 MutS domain V APT56_20460 PF01624 MutS domain I APT56_20460 PF05188 MutS domain II APT56_20460 PF05190 MutS family domain IV APT56_20460 PF05192 MutS domain III APT56_20465 PF08007 Cupin superfamily protein APT56_20475 PF06804 NlpB/DapX lipoprotein APT56_20480 PF00701 Dihydrodipicolinate synthetase family APT56_20485 PF02163 Peptidase family M50 APT56_20490 PF01300 Telomere recombination APT56_20495 PF04228 APT56_20495 APT56_20520 PF12840 Helix-turn-helix domain APT56_20525 PF07690 Major Facilitator Superfamily APT56_20530 PF04299 Putative FMN-binding domain APT56_20535 PF13673 Acetyltransferase (GNAT) domain APT56_20545 PF13570 PQQ-like domain APT56_20550 PF01588 Putative tRNA binding domain APT56_20555 PF02659 APT56_20555 APT56_20560 PF01507 Phosphoadenosine phosphosulfate reductase family APT56_20560 PF11922 APT56_20560 APT56_20565 PF02195 ParB-like nuclease domain APT56_20570 PF00512 His Kinase A (phospho-acceptor) domain APT56_20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20575 PF00072 Response regulator receiver domain APT56_20575 PF00486 Transcriptional regulatory protein, C terminal APT56_20580 PF01925 APT56_20580 APT56_20585 PF00419 Fimbrial protein APT56_20590 PF00577 Outer membrane usher protein APT56_20590 PF13953 PapC C-terminal domain APT56_20590 PF13954 PapC N-terminal domain APT56_20595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain APT56_20595 PF02753 Pili assembly chaperone PapD, C-terminal domain APT56_20610 PF00072 Response regulator receiver domain APT56_20610 PF00563 EAL domain APT56_20615 PF00072 Response regulator receiver domain APT56_20615 PF00512 His Kinase A (phospho-acceptor) domain APT56_20615 PF01627 Hpt domain APT56_20615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20620 PF00072 Response regulator receiver domain APT56_20620 PF00196 Bacterial regulatory proteins, luxR family APT56_20625 PF13343 Bacterial extracellular solute-binding protein APT56_20630 PF06551 APT56_20630 APT56_20640 PF06551 APT56_20640 APT56_20645 PF06551 APT56_20645 APT56_20650 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain APT56_20655 PF00577 Outer membrane usher protein APT56_20655 PF13954 PapC N-terminal domain APT56_20660 PF03797 Autotransporter beta-domain APT56_20665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_20665 PF00672 HAMP domain APT56_20665 PF12729 APT56_20665 APT56_20670 PF00082 Subtilase family APT56_20670 PF03797 Autotransporter beta-domain APT56_20670 PF12951 APT56_20670 APT56_20675 PF00795 Carbon-nitrogen hydrolase APT56_20690 PF00072 Response regulator receiver domain APT56_20690 PF00486 Transcriptional regulatory protein, C terminal APT56_20695 PF00669 Bacterial flagellin N-terminal helical region APT56_20695 PF00700 Bacterial flagellin C-terminal helical region APT56_20695 PF12445 APT56_20695 APT56_20700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_20705 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20715 PF01391 Collagen triple helix repeat (20 copies) APT56_20725 PF13437 HlyD family secretion protein APT56_20725 PF13533 Biotin-lipoyl like APT56_20730 PF00005 ABC transporter APT56_20730 PF00664 ABC transporter transmembrane region APT56_20735 PF02321 Outer membrane efflux protein APT56_20750 PF13091 PLD-like domain APT56_20755 PF03061 Thioesterase superfamily APT56_20760 PF02311 AraC-like ligand binding domain APT56_20760 PF12833 Helix-turn-helix domain APT56_20765 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_20770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_20770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_20775 PF07690 Major Facilitator Superfamily APT56_20780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20780 PF03466 LysR substrate binding domain APT56_20785 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20795 PF00795 Carbon-nitrogen hydrolase APT56_20800 PF01381 Helix-turn-helix APT56_20800 PF07883 Cupin domain APT56_20805 PF00892 EamA-like transporter family APT56_20810 PF00392 Bacterial regulatory proteins, gntR family APT56_20810 PF07729 FCD domain APT56_20815 PF03401 Tripartite tricarboxylate transporter family receptor APT56_20820 PF01019 Gamma-glutamyltranspeptidase APT56_20825 PF13180 PDZ domain APT56_20825 PF13365 Trypsin-like peptidase domain APT56_20830 PF02040 APT56_20830 APT56_20835 PF08534 Redoxin APT56_20840 PF02683 APT56_20840 APT56_20845 PF00072 Response regulator receiver domain APT56_20845 PF00486 Transcriptional regulatory protein, C terminal APT56_20850 PF00672 HAMP domain APT56_20850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_20855 PF02566 OsmC-like protein APT56_20860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20860 PF03466 LysR substrate binding domain APT56_20865 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20870 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20870 PF12911 APT56_20870 APT56_20875 PF00005 ABC transporter APT56_20875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_20880 PF00005 ABC transporter APT56_20880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_20885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_20890 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APT56_20890 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APT56_20895 PF13609 Gram-negative porin APT56_20900 PF09335 APT56_20900 APT56_20905 PF00155 Aminotransferase class I and II APT56_20905 PF00392 Bacterial regulatory proteins, gntR family APT56_20910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_20910 PF03466 LysR substrate binding domain APT56_20915 PF04632 APT56_20915 APT56_20920 PF07869 APT56_20920 APT56_20925 PF13437 HlyD family secretion protein APT56_20925 PF13533 Biotin-lipoyl like APT56_20930 PF02321 Outer membrane efflux protein APT56_20940 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT56_20945 PF00534 Glycosyl transferases group 1 APT56_20945 PF13439 Glycosyltransferase Family 4 APT56_20950 PF04229 GrpB protein APT56_20955 PF00326 Prolyl oligopeptidase family APT56_20975 PF07883 Cupin domain APT56_20975 PF13560 Helix-turn-helix domain APT56_20980 PF01266 FAD dependent oxidoreductase APT56_20985 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20990 PF00528 Binding-protein-dependent transport system inner membrane component APT56_20995 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_21000 PF00005 ABC transporter APT56_21005 PF00171 Aldehyde dehydrogenase family APT56_21010 PF02253 Phospholipase A1 APT56_21015 PF00701 Dihydrodipicolinate synthetase family APT56_21020 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_21020 PF13378 Enolase C-terminal domain-like APT56_21025 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT56_21030 PF03401 Tripartite tricarboxylate transporter family receptor APT56_21035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21035 PF03466 LysR substrate binding domain APT56_21045 PF05751 APT56_21045 APT56_21050 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase APT56_21050 PF12801 APT56_21050 APT56_21050 PF13746 4Fe-4S dicluster domain APT56_21055 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_21055 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP APT56_21065 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO APT56_21070 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT56_21075 PF03597 APT56_21075 APT56_21080 PF00122 E1-E2 ATPase APT56_21085 PF00202 Aminotransferase class-III APT56_21090 PF00155 Aminotransferase class I and II APT56_21100 PF08242 Methyltransferase domain APT56_21105 PF13500 AAA domain APT56_21110 PF12697 Alpha/beta hydrolase family APT56_21115 PF12833 Helix-turn-helix domain APT56_21120 PF00753 Metallo-beta-lactamase superfamily APT56_21135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21135 PF03466 LysR substrate binding domain APT56_21140 PF00463 Isocitrate lyase family APT56_21145 PF14489 QueF-like protein APT56_21145 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APT56_21150 PF00034 Cytochrome c APT56_21150 PF03150 Di-haem cytochrome c peroxidase APT56_21155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21155 PF03466 LysR substrate binding domain APT56_21160 PF00180 Isocitrate/isopropylmalate dehydrogenase APT56_21165 PF07690 Major Facilitator Superfamily APT56_21170 PF01066 CDP-alcohol phosphatidyltransferase APT56_21175 PF01541 GIY-YIG catalytic domain APT56_21175 PF02151 UvrB/uvrC motif APT56_21175 PF08459 UvrC Helix-hairpin-helix N-terminal APT56_21175 PF14520 Helix-hairpin-helix domain APT56_21180 PF00933 Glycosyl hydrolase family 3 N terminal domain APT56_21185 PF01648 4'-phosphopantetheinyl transferase superfamily APT56_21190 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APT56_21195 PF02321 Outer membrane efflux protein APT56_21200 PF00873 AcrB/AcrD/AcrF family APT56_21205 PF00529 HlyD family secretion protein APT56_21205 PF16576 APT56_21205 APT56_21210 PF00486 Transcriptional regulatory protein, C terminal APT56_21215 PF01734 Patatin-like phospholipase APT56_21215 PF12536 APT56_21215 APT56_21220 PF13590 Domain of unknown function (DUF4136) APT56_21225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21225 PF03459 TOBE domain APT56_21230 PF00005 ABC transporter APT56_21235 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21240 PF13531 Bacterial extracellular solute-binding protein APT56_21245 PF02675 S-adenosylmethionine decarboxylase APT56_21250 PF13785 APT56_21250 APT56_21255 PF09851 APT56_21255 APT56_21255 PF13421 APT56_21255 APT56_21260 PF03994 APT56_21260 APT56_21265 PF01564 Spermine/spermidine synthase APT56_21270 PF13450 NAD(P)-binding Rossmann-like domain APT56_21275 PF01266 FAD dependent oxidoreductase APT56_21285 PF00005 ABC transporter APT56_21290 PF02653 APT56_21290 APT56_21295 PF04392 ABC transporter substrate binding protein APT56_21300 PF00248 Aldo/keto reductase family APT56_21305 PF03401 Tripartite tricarboxylate transporter family receptor APT56_21310 PF00501 AMP-binding enzyme APT56_21310 PF13193 AMP-binding enzyme C-terminal domain APT56_21315 PF00378 Enoyl-CoA hydratase/isomerase family APT56_21320 PF05292 Malonyl-CoA decarboxylase (MCD) APT56_21320 PF17408 APT56_21320 APT56_21325 PF00392 Bacterial regulatory proteins, gntR family APT56_21325 PF07729 FCD domain APT56_21335 PF00108 Thiolase, N-terminal domain APT56_21335 PF02803 Thiolase, C-terminal domain APT56_21340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_21340 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_21340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_21345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_21345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_21350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21350 PF03466 LysR substrate binding domain APT56_21355 PF02515 CoA-transferase family III APT56_21360 PF13452 N-terminal half of MaoC dehydratase APT56_21365 PF03401 Tripartite tricarboxylate transporter family receptor APT56_21370 PF04966 Carbohydrate-selective porin, OprB family APT56_21375 PF13407 Periplasmic binding protein domain APT56_21380 PF00005 ABC transporter APT56_21385 PF02653 APT56_21385 APT56_21390 PF10282 Lactonase, 7-bladed beta-propeller APT56_21395 PF01370 NAD dependent epimerase/dehydratase family APT56_21400 PF00356 Bacterial regulatory proteins, lacI family APT56_21400 PF13377 Periplasmic binding protein-like domain APT56_21405 PF01361 Tautomerase enzyme APT56_21410 PF00005 ABC transporter APT56_21415 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21420 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APT56_21425 PF02353 Mycolic acid cyclopropane synthetase APT56_21430 PF07690 Major Facilitator Superfamily APT56_21435 PF00830 Ribosomal L28 family APT56_21440 PF00471 Ribosomal protein L33 APT56_21445 PF13458 Periplasmic binding protein APT56_21450 PF02653 APT56_21450 APT56_21455 PF00005 ABC transporter APT56_21455 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_21460 PF00916 APT56_21460 APT56_21460 PF01740 STAS domain APT56_21465 PF13714 Phosphoenolpyruvate phosphomutase APT56_21470 PF01814 Hemerythrin HHE cation binding domain APT56_21475 PF00768 D-alanyl-D-alanine carboxypeptidase APT56_21475 PF07943 Penicillin-binding protein 5, C-terminal domain APT56_21480 PF00216 Bacterial DNA-binding protein APT56_21485 PF01047 MarR family APT56_21490 PF07690 Major Facilitator Superfamily APT56_21495 PF00133 tRNA synthetases class I (I, L, M and V) APT56_21495 PF08264 Anticodon-binding domain of tRNA APT56_21495 PF09334 tRNA synthetases class I (M) APT56_21495 PF13603 Leucyl-tRNA synthetase, Domain 2 APT56_21500 PF04390 Lipopolysaccharide-assembly APT56_21505 PF06144 DNA polymerase III, delta subunit APT56_21510 PF00171 Aldehyde dehydrogenase family APT56_21525 PF13302 Acetyltransferase (GNAT) domain APT56_21530 PF01425 Amidase APT56_21535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21535 PF03466 LysR substrate binding domain APT56_21540 PF07690 Major Facilitator Superfamily APT56_21550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_21550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_21555 PF14542 GCN5-related N-acetyl-transferase APT56_21560 PF02810 SEC-C motif APT56_21565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21565 PF03466 LysR substrate binding domain APT56_21570 PF13419 Haloacid dehalogenase-like hydrolase APT56_21575 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_21615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21615 PF03466 LysR substrate binding domain APT56_21620 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APT56_21620 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APT56_21625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21625 PF03466 LysR substrate binding domain APT56_21630 PF00924 Mechanosensitive ion channel APT56_21630 PF12607 APT56_21630 APT56_21650 PF03992 Antibiotic biosynthesis monooxygenase APT56_21655 PF12643 APT56_21655 APT56_21660 PF00929 Exonuclease APT56_21665 PF07866 Protein of unknown function (DUF1653) APT56_21670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_21670 PF08447 PAS fold APT56_21675 PF14497 Glutathione S-transferase, C-terminal domain APT56_21680 PF01965 DJ-1/PfpI family APT56_21680 PF12833 Helix-turn-helix domain APT56_21685 PF13416 Bacterial extracellular solute-binding protein APT56_21690 PF00005 ABC transporter APT56_21690 PF08402 TOBE domain APT56_21695 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21700 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21705 PF05544 Proline racemase APT56_21720 PF00571 CBS domain APT56_21725 PF01925 APT56_21725 APT56_21740 PF00330 Aconitase family (aconitate hydratase) APT56_21740 PF06434 Aconitate hydratase 2 N-terminus APT56_21740 PF11791 Aconitate B N-terminal domain APT56_21750 PF05724 Thiopurine S-methyltransferase (TPMT) APT56_21755 PF02469 Fasciclin domain APT56_21760 PF13432 Tetratricopeptide repeat APT56_21770 PF06912 APT56_21770 APT56_21775 PF00248 Aldo/keto reductase family APT56_21780 PF06719 APT56_21780 APT56_21780 PF12833 Helix-turn-helix domain APT56_21785 PF11937 APT56_21785 APT56_21790 PF04542 Sigma-70 region 2 APT56_21790 PF08281 Sigma-70, region 4 APT56_21795 PF10099 APT56_21795 APT56_21800 PF04116 APT56_21800 APT56_21805 PF04325 Protein of unknown function (DUF465) APT56_21810 PF13991 APT56_21810 APT56_21815 PF01810 APT56_21815 APT56_21820 PF02627 Carboxymuconolactone decarboxylase family APT56_21825 PF00083 Sugar (and other) transporter APT56_21825 PF08946 Osmosensory transporter coiled coil APT56_21835 PF07690 Major Facilitator Superfamily APT56_21840 PF00005 ABC transporter APT56_21845 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21850 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21855 PF12849 PBP superfamily domain APT56_21860 PF02503 Polyphosphate kinase middle domain APT56_21860 PF13089 Polyphosphate kinase N-terminal domain APT56_21860 PF13090 Polyphosphate kinase C-terminal domain APT56_21865 PF02541 Ppx/GppA phosphatase family APT56_21870 PF13444 Acetyltransferase (GNAT) domain APT56_21875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT56_21875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT56_21875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT56_21875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT56_21880 PF00809 Pterin binding enzyme APT56_21885 PF00004 ATPase family associated with various cellular activities (AAA) APT56_21885 PF01434 Peptidase family M41 APT56_21885 PF06480 FtsH Extracellular APT56_21890 PF01728 FtsJ-like methyltransferase APT56_21895 PF01985 CRS1 / YhbY (CRM) domain APT56_21900 PF01272 Transcription elongation factor, GreA/GreB, C-term APT56_21900 PF03449 Transcription elongation factor, N-terminal APT56_21905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_21905 PF00672 HAMP domain APT56_21905 PF02203 Tar ligand binding domain homologue APT56_21910 PF00860 Permease family APT56_21915 PF14282 APT56_21915 APT56_21920 PF13343 Bacterial extracellular solute-binding protein APT56_21925 PF00528 Binding-protein-dependent transport system inner membrane component APT56_21930 PF00005 ABC transporter APT56_21930 PF08402 TOBE domain APT56_21935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_21935 PF03466 LysR substrate binding domain APT56_21940 PF00300 Histidine phosphatase superfamily (branch 1) APT56_21945 PF00106 short chain dehydrogenase APT56_21950 PF05118 Aspartyl/Asparaginyl beta-hydroxylase APT56_21955 PF02142 MGS-like domain APT56_21955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_21955 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT56_21960 PF00117 Glutamine amidotransferase class-I APT56_21960 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APT56_21965 PF00923 Transaldolase APT56_21970 PF02627 Carboxymuconolactone decarboxylase family APT56_21975 PF00360 Phytochrome region APT56_21975 PF00512 His Kinase A (phospho-acceptor) domain APT56_21975 PF01590 GAF domain APT56_21975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_21975 PF08446 PAS fold APT56_21980 PF00072 Response regulator receiver domain APT56_21990 PF01126 Heme oxygenase APT56_21995 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22000 PF00005 ABC transporter APT56_22005 PF13379 NMT1-like family APT56_22010 PF02515 CoA-transferase family III APT56_22015 PF02132 RecR protein APT56_22015 PF13662 Toprim domain APT56_22020 PF02575 YbaB/EbfC DNA-binding family APT56_22025 PF12169 DNA polymerase III subunits gamma and tau domain III APT56_22025 PF12170 DNA polymerase III tau subunit V interacting with alpha APT56_22025 PF13177 DNA polymerase III, delta subunit APT56_22035 PF00580 UvrD/REP helicase N-terminal domain APT56_22035 PF12705 PD-(D/E)XK nuclease superfamily APT56_22035 PF13361 UvrD-like helicase C-terminal domain APT56_22040 PF12705 PD-(D/E)XK nuclease superfamily APT56_22045 PF07690 Major Facilitator Superfamily APT56_22050 PF03060 Nitronate monooxygenase APT56_22055 PF01850 PIN domain APT56_22060 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APT56_22065 PF03401 Tripartite tricarboxylate transporter family receptor APT56_22070 PF02515 CoA-transferase family III APT56_22075 PF00378 Enoyl-CoA hydratase/isomerase family APT56_22080 PF12802 MarR family APT56_22085 PF00682 HMGL-like APT56_22090 PF00501 AMP-binding enzyme APT56_22090 PF13193 AMP-binding enzyme C-terminal domain APT56_22095 PF00378 Enoyl-CoA hydratase/isomerase family APT56_22105 PF00768 D-alanyl-D-alanine carboxypeptidase APT56_22110 PF13467 Ribbon-helix-helix domain APT56_22115 PF00107 Zinc-binding dehydrogenase APT56_22115 PF08240 Alcohol dehydrogenase GroES-like domain APT56_22120 PF01965 DJ-1/PfpI family APT56_22125 PF04073 Aminoacyl-tRNA editing domain APT56_22130 PF00589 Phage integrase family APT56_22130 PF02899 Phage integrase, N-terminal SAM-like domain APT56_22135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_22135 PF03466 LysR substrate binding domain APT56_22140 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_22140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_22140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_22145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT56_22145 PF02770 Acyl-CoA dehydrogenase, middle domain APT56_22145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT56_22150 PF00593 TonB dependent receptor APT56_22150 PF07715 TonB-dependent Receptor Plug Domain APT56_22155 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_22170 PF01575 MaoC like domain APT56_22175 PF00037 4Fe-4S binding domain APT56_22175 PF00175 Oxidoreductase NAD-binding domain APT56_22175 PF00970 Oxidoreductase FAD-binding domain APT56_22185 PF00378 Enoyl-CoA hydratase/isomerase family APT56_22190 PF01202 Shikimate kinase APT56_22190 PF01381 Helix-turn-helix APT56_22195 PF16155 APT56_22195 APT56_22200 PF00501 AMP-binding enzyme APT56_22200 PF13193 AMP-binding enzyme C-terminal domain APT56_22205 PF12697 Alpha/beta hydrolase family APT56_22210 PF13458 Periplasmic binding protein APT56_22215 PF02653 APT56_22215 APT56_22220 PF02653 APT56_22220 APT56_22225 PF00005 ABC transporter APT56_22225 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_22230 PF00005 ABC transporter APT56_22235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_22235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_22240 PF00005 ABC transporter APT56_22245 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22250 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_22255 PF00491 Arginase family APT56_22260 PF01614 Bacterial transcriptional regulator APT56_22260 PF09339 IclR helix-turn-helix domain APT56_22265 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_22270 PF03401 Tripartite tricarboxylate transporter family receptor APT56_22275 PF01144 Coenzyme A transferase APT56_22280 PF01144 Coenzyme A transferase APT56_22285 PF01614 Bacterial transcriptional regulator APT56_22285 PF09339 IclR helix-turn-helix domain APT56_22290 PF01300 Telomere recombination APT56_22290 PF03481 Putative GTP-binding controlling metal-binding APT56_22295 PF02222 ATP-grasp domain APT56_22300 PF00731 AIR carboxylase APT56_22305 PF02600 Disulfide bond formation protein DsbB APT56_22310 PF01259 SAICAR synthetase APT56_22315 PF04828 Glutathione-dependent formaldehyde-activating enzyme APT56_22320 PF01116 Fructose-bisphosphate aldolase class-II APT56_22325 PF01425 Amidase APT56_22330 PF00005 ABC transporter APT56_22330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_22335 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22335 PF12911 APT56_22335 APT56_22340 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_22350 PF01546 Peptidase family M20/M25/M40 APT56_22350 PF07687 Peptidase dimerisation domain APT56_22355 PF01614 Bacterial transcriptional regulator APT56_22355 PF09339 IclR helix-turn-helix domain APT56_22360 PF08450 SMP-30/Gluconolaconase/LRE-like region APT56_22365 PF00375 Sodium:dicarboxylate symporter family APT56_22385 PF01979 Amidohydrolase family APT56_22390 PF00005 ABC transporter APT56_22395 PF00005 ABC transporter APT56_22400 PF06007 APT56_22400 APT56_22405 PF05861 APT56_22405 APT56_22410 PF05845 Bacterial phosphonate metabolism protein (PhnH) APT56_22415 PF06754 APT56_22415 APT56_22420 PF00392 Bacterial regulatory proteins, gntR family APT56_22420 PF07702 UTRA domain APT56_22425 PF01979 Amidohydrolase family APT56_22430 PF06299 APT56_22430 APT56_22435 PF13238 AAA domain APT56_22440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_22440 PF03466 LysR substrate binding domain APT56_22445 PF01019 Gamma-glutamyltranspeptidase APT56_22450 PF03401 Tripartite tricarboxylate transporter family receptor APT56_22460 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22465 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein APT56_22470 PF00005 ABC transporter APT56_22475 PF04828 Glutathione-dependent formaldehyde-activating enzyme APT56_22480 PF12840 Helix-turn-helix domain APT56_22485 PF08327 Activator of Hsp90 ATPase homolog 1-like protein APT56_22490 PF01176 Translation initiation factor 1A / IF-1 APT56_22500 PF01551 Peptidase family M23 APT56_22510 PF00994 Probable molybdopterin binding domain APT56_22515 PF04914 DltD C-terminal region APT56_22520 PF01384 APT56_22520 APT56_22530 PF02798 Glutathione S-transferase, N-terminal domain APT56_22530 PF13410 Glutathione S-transferase, C-terminal domain APT56_22535 PF13591 MerR HTH family regulatory protein APT56_22540 PF00226 DnaJ domain APT56_22540 PF01556 DnaJ C terminal domain APT56_22545 PF00583 Acetyltransferase (GNAT) family APT56_22555 PF13417 Glutathione S-transferase, N-terminal domain APT56_22555 PF14834 Glutathione S-transferase, C-terminal domain APT56_22560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_22565 PF11339 APT56_22565 APT56_22570 PF01515 Phosphate acetyl/butaryl transferase APT56_22575 PF00871 Acetokinase family APT56_22580 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_22585 PF00916 APT56_22585 APT56_22585 PF01740 STAS domain APT56_22590 PF03401 Tripartite tricarboxylate transporter family receptor APT56_22595 PF00162 Phosphoglycerate kinase APT56_22600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT56_22600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT56_22605 PF00456 Transketolase, thiamine diphosphate binding domain APT56_22605 PF02779 Transketolase, pyrimidine binding domain APT56_22605 PF02780 Transketolase, C-terminal domain APT56_22615 PF04452 RNA methyltransferase APT56_22620 PF01337 Barstar (barnase inhibitor) APT56_22625 PF01734 Patatin-like phospholipase APT56_22630 PF00390 Malic enzyme, N-terminal domain APT56_22630 PF01515 Phosphate acetyl/butaryl transferase APT56_22630 PF03949 Malic enzyme, NAD binding domain APT56_22640 PF00155 Aminotransferase class I and II APT56_22645 PF01464 Transglycosylase SLT domain APT56_22650 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APT56_22660 PF07332 APT56_22660 APT56_22665 PF05957 APT56_22665 APT56_22675 PF00005 ABC transporter APT56_22680 PF00528 Binding-protein-dependent transport system inner membrane component APT56_22685 PF13379 NMT1-like family APT56_22690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT56_22690 PF10414 Sirohaem synthase dimerisation region APT56_22690 PF13241 Putative NAD(P)-binding APT56_22690 PF14824 Sirohaem biosynthesis protein central APT56_22695 PF14681 Uracil phosphoribosyltransferase APT56_22700 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT56_22705 PF13458 Periplasmic binding protein APT56_22710 PF01613 Flavin reductase like domain APT56_22715 PF00296 Luciferase-like monooxygenase APT56_22720 PF01614 Bacterial transcriptional regulator APT56_22720 PF09339 IclR helix-turn-helix domain APT56_22725 PF02547 Queuosine biosynthesis protein APT56_22730 PF01702 Queuine tRNA-ribosyltransferase APT56_22735 PF02699 Preprotein translocase subunit APT56_22740 PF02355 Protein export membrane protein APT56_22740 PF07549 SecD/SecF GG Motif APT56_22740 PF13721 SecD export protein N-terminal TM region APT56_22745 PF02355 Protein export membrane protein APT56_22745 PF07549 SecD/SecF GG Motif APT56_22750 PF13468 Glyoxalase-like domain APT56_22755 PF01411 tRNA synthetases class II (A) APT56_22755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT56_22760 PF01569 PAP2 superfamily APT56_22765 PF00919 Uncharacterized protein family UPF0004 APT56_22765 PF01938 TRAM domain APT56_22765 PF04055 Radical SAM superfamily APT56_22770 PF02562 PhoH-like protein APT56_22775 PF02130 Uncharacterized protein family UPF0054 APT56_22780 PF00571 CBS domain APT56_22780 PF03471 Transporter associated domain APT56_22785 PF00795 Carbon-nitrogen hydrolase APT56_22790 PF00248 Aldo/keto reductase family APT56_22825 PF00196 Bacterial regulatory proteins, luxR family APT56_22825 PF13426 PAS domain APT56_22830 PF04055 Radical SAM superfamily APT56_22830 PF06968 Biotin and Thiamin Synthesis associated domain APT56_22840 PF07690 Major Facilitator Superfamily APT56_22845 PF08534 Redoxin APT56_22855 PF01738 Dienelactone hydrolase family APT56_22860 PF05359 APT56_22860 APT56_22865 PF01967 MoaC family APT56_22870 PF02597 ThiS family APT56_22875 PF02391 MoaE protein APT56_22880 PF00994 Probable molybdopterin binding domain APT56_22890 PF12804 MobA-like NTP transferase domain APT56_22895 PF04055 Radical SAM superfamily APT56_22895 PF06463 Molybdenum Cofactor Synthesis C APT56_22895 PF13394 4Fe-4S single cluster domain APT56_22900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_22900 PF12727 PBP superfamily domain APT56_22905 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin APT56_22910 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APT56_22910 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APT56_22915 PF00037 4Fe-4S binding domain APT56_22915 PF00384 Molybdopterin oxidoreductase APT56_22915 PF01568 Molydopterin dinucleotide binding domain APT56_22915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT56_22915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APT56_22915 PF13510 2Fe-2S iron-sulfur cluster binding domain APT56_22920 PF02634 FdhD/NarQ family APT56_22925 PF11390 APT56_22925 APT56_22930 PF07690 Major Facilitator Superfamily APT56_22935 PF05175 Methyltransferase small domain APT56_22940 PF07077 APT56_22940 APT56_22945 PF02417 APT56_22945 APT56_22950 PF02417 APT56_22950 APT56_22955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_22955 PF03466 LysR substrate binding domain APT56_22960 PF01177 Asp/Glu/Hydantoin racemase APT56_22965 PF00582 Universal stress protein family APT56_22970 PF00582 Universal stress protein family APT56_22975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_22980 PF00072 Response regulator receiver domain APT56_22980 PF00486 Transcriptional regulatory protein, C terminal APT56_22985 PF03413 Peptidase propeptide and YPEB domain APT56_22990 PF13670 APT56_22990 APT56_22995 PF01794 APT56_22995 APT56_22995 PF08022 APT56_22995 APT56_23000 PF07995 Glucose / Sorbosone dehydrogenase APT56_23005 PF00127 Copper binding proteins, plastocyanin/azurin family APT56_23010 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_23015 PF08811 APT56_23015 APT56_23020 PF07394 APT56_23020 APT56_23025 PF03401 Tripartite tricarboxylate transporter family receptor APT56_23030 PF04303 PrpF protein APT56_23035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23035 PF03466 LysR substrate binding domain APT56_23040 PF13673 Acetyltransferase (GNAT) domain APT56_23045 PF03640 APT56_23045 APT56_23050 PF04542 Sigma-70 region 2 APT56_23050 PF08281 Sigma-70, region 4 APT56_23065 PF00392 Bacterial regulatory proteins, gntR family APT56_23065 PF07729 FCD domain APT56_23070 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APT56_23070 PF00364 Biotin-requiring enzyme APT56_23070 PF02626 Allophanate hydrolase subunit 2 APT56_23070 PF02682 Allophanate hydrolase subunit 1 APT56_23070 PF02785 Biotin carboxylase C-terminal domain APT56_23070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT56_23075 PF01425 Amidase APT56_23080 PF13433 Periplasmic binding protein domain APT56_23085 PF02653 APT56_23085 APT56_23090 PF02653 APT56_23090 APT56_23095 PF00005 ABC transporter APT56_23095 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_23100 PF00005 ABC transporter APT56_23105 PF11162 APT56_23105 APT56_23110 PF00593 TonB dependent receptor APT56_23110 PF07715 TonB-dependent Receptor Plug Domain APT56_23115 PF03929 APT56_23115 APT56_23120 PF03960 ArsC family APT56_23125 PF01569 PAP2 superfamily APT56_23130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT56_23135 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_23135 PF02805 Metal binding domain of Ada APT56_23135 PF06029 AlkA N-terminal domain APT56_23135 PF12833 Helix-turn-helix domain APT56_23140 PF04461 Protein of unknown function (DUF520) APT56_23145 PF00005 ABC transporter APT56_23150 PF01032 FecCD transport family APT56_23155 PF01497 Periplasmic binding protein APT56_23160 PF05171 Haemin-degrading HemS APT56_23165 PF00593 TonB dependent receptor APT56_23165 PF07715 TonB-dependent Receptor Plug Domain APT56_23170 PF04773 FecR protein APT56_23170 PF16220 APT56_23170 APT56_23175 PF04542 Sigma-70 region 2 APT56_23175 PF08281 Sigma-70, region 4 APT56_23180 PF05425 APT56_23180 APT56_23190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23190 PF03466 LysR substrate binding domain APT56_23195 PF03401 Tripartite tricarboxylate transporter family receptor APT56_23205 PF08279 HTH domain APT56_23205 PF13280 APT56_23205 APT56_23210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_23215 PF00939 Sodium:sulfate symporter transmembrane region APT56_23220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23220 PF03466 LysR substrate binding domain APT56_23230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23230 PF03466 LysR substrate binding domain APT56_23235 PF00324 Amino acid permease APT56_23240 PF00266 Aminotransferase class-V APT56_23245 PF01037 AsnC family APT56_23245 PF13412 Winged helix-turn-helix DNA-binding APT56_23250 PF03006 APT56_23250 APT56_23255 PF03576 Peptidase family S58 APT56_23260 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_23265 PF00528 Binding-protein-dependent transport system inner membrane component APT56_23270 PF00005 ABC transporter APT56_23275 PF01476 LysM domain APT56_23275 PF01551 Peptidase family M23 APT56_23280 PF05231 APT56_23280 APT56_23280 PF08447 PAS fold APT56_23285 PF00887 Acyl CoA binding protein APT56_23285 PF12680 SnoaL-like domain APT56_23285 PF12697 Alpha/beta hydrolase family APT56_23290 PF11162 APT56_23290 APT56_23295 PF02630 SCO1/SenC APT56_23300 PF04314 Protein of unknown function (DUF461) APT56_23310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_23315 PF00072 Response regulator receiver domain APT56_23315 PF02954 Bacterial regulatory protein, Fis family APT56_23320 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT56_23320 PF06481 COX Aromatic Rich Motif APT56_23325 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT56_23330 PF00510 Cytochrome c oxidase subunit III APT56_23335 PF03626 APT56_23335 APT56_23340 PF13160 APT56_23340 APT56_23345 PF04891 APT56_23345 APT56_23355 PF00593 TonB dependent receptor APT56_23355 PF07715 TonB-dependent Receptor Plug Domain APT56_23360 PF04102 SlyX APT56_23365 PF13663 APT56_23365 APT56_23375 PF00390 Malic enzyme, N-terminal domain APT56_23375 PF01515 Phosphate acetyl/butaryl transferase APT56_23375 PF03949 Malic enzyme, NAD binding domain APT56_23380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23380 PF03466 LysR substrate binding domain APT56_23385 PF02311 AraC-like ligand binding domain APT56_23385 PF12833 Helix-turn-helix domain APT56_23390 PF00892 EamA-like transporter family APT56_23400 PF13463 Winged helix DNA-binding domain APT56_23405 PF01554 MatE APT56_23410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23410 PF03466 LysR substrate binding domain APT56_23420 PF01925 APT56_23420 APT56_23425 PF00106 short chain dehydrogenase APT56_23435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23435 PF03466 LysR substrate binding domain APT56_23440 PF12697 Alpha/beta hydrolase family APT56_23450 PF13673 Acetyltransferase (GNAT) domain APT56_23455 PF13560 Helix-turn-helix domain APT56_23460 PF13091 PLD-like domain APT56_23465 PF09859 APT56_23465 APT56_23470 PF13532 2OG-Fe(II) oxygenase superfamily APT56_23475 PF03781 Sulfatase-modifying factor enzyme 1 APT56_23480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_23485 PF02311 AraC-like ligand binding domain APT56_23485 PF12833 Helix-turn-helix domain APT56_23490 PF07883 Cupin domain APT56_23495 PF02308 APT56_23495 APT56_23500 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_23505 PF13419 Haloacid dehalogenase-like hydrolase APT56_23510 PF00730 HhH-GPD superfamily base excision DNA repair protein APT56_23515 PF09859 APT56_23515 APT56_23520 PF00330 Aconitase family (aconitate hydratase) APT56_23520 PF00694 Aconitase C-terminal domain APT56_23525 PF00392 Bacterial regulatory proteins, gntR family APT56_23525 PF07729 FCD domain APT56_23530 PF00593 TonB dependent receptor APT56_23530 PF07715 TonB-dependent Receptor Plug Domain APT56_23535 PF04773 FecR protein APT56_23535 PF16220 APT56_23535 APT56_23535 PF16344 APT56_23535 APT56_23540 PF04542 Sigma-70 region 2 APT56_23540 PF08281 Sigma-70, region 4 APT56_23550 PF00563 EAL domain APT56_23550 PF02378 Phosphotransferase system, EIIC APT56_23555 PF01145 SPFH domain / Band 7 family APT56_23560 PF11776 Domain of unknown function (DUF3315) APT56_23565 PF10387 Protein of unknown function (DUF2442) APT56_23565 PF14300 Domain of unknown function (DUF4375) APT56_23570 PF01447 Thermolysin metallopeptidase, catalytic domain APT56_23570 PF02868 Thermolysin metallopeptidase, alpha-helical domain APT56_23580 PF07690 Major Facilitator Superfamily APT56_23585 PF12833 Helix-turn-helix domain APT56_23590 PF13847 Methyltransferase domain APT56_23595 PF12146 Putative lysophospholipase APT56_23600 PF03741 APT56_23600 APT56_23605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23605 PF03466 LysR substrate binding domain APT56_23630 PF02698 DUF218 domain APT56_23635 PF00850 Histone deacetylase domain APT56_23645 PF07690 Major Facilitator Superfamily APT56_23650 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT56_23650 PF06481 COX Aromatic Rich Motif APT56_23655 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT56_23660 PF00510 Cytochrome c oxidase subunit III APT56_23665 PF03626 APT56_23665 APT56_23670 PF02104 APT56_23670 APT56_23675 PF13609 Gram-negative porin APT56_23680 PF13609 Gram-negative porin APT56_23685 PF02311 AraC-like ligand binding domain APT56_23685 PF12833 Helix-turn-helix domain APT56_23690 PF07690 Major Facilitator Superfamily APT56_23695 PF08857 Putative ParB-like nuclease APT56_23700 PF00043 Glutathione S-transferase, C-terminal domain APT56_23700 PF02798 Glutathione S-transferase, N-terminal domain APT56_23705 PF08279 HTH domain APT56_23705 PF13280 APT56_23705 APT56_23725 PF00072 Response regulator receiver domain APT56_23725 PF00196 Bacterial regulatory proteins, luxR family APT56_23730 PF10009 APT56_23730 APT56_23735 PF04185 Phosphoesterase family APT56_23735 PF05506 APT56_23735 APT56_23740 PF00583 Acetyltransferase (GNAT) family APT56_23740 PF12802 MarR family APT56_23745 PF00149 Calcineurin-like phosphoesterase APT56_23750 PF03861 ANTAR domain APT56_23750 PF08376 Nitrate and nitrite sensing APT56_23755 PF13806 Rieske-like [2Fe-2S] domain APT56_23760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT56_23760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT56_23760 PF04324 BFD-like [2Fe-2S] binding domain APT56_23760 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_23765 PF00175 Oxidoreductase NAD-binding domain APT56_23765 PF00258 Flavodoxin APT56_23765 PF00384 Molybdopterin oxidoreductase APT56_23765 PF00667 FAD binding domain APT56_23765 PF01568 Molydopterin dinucleotide binding domain APT56_23765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT56_23770 PF00248 Aldo/keto reductase family APT56_23775 PF00248 Aldo/keto reductase family APT56_23780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_23780 PF03466 LysR substrate binding domain APT56_23785 PF01253 Translation initiation factor SUI1 APT56_23790 PF08883 Dopa 4,5-dioxygenase family APT56_23795 PF12833 Helix-turn-helix domain APT56_23800 PF01494 FAD binding domain APT56_23800 PF13450 NAD(P)-binding Rossmann-like domain APT56_23805 PF01970 APT56_23805 APT56_23810 PF07331 APT56_23810 APT56_23815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_23815 PF02743 Cache domain APT56_23820 PF00990 GGDEF domain APT56_23820 PF13492 GAF domain APT56_23825 PF12840 Helix-turn-helix domain APT56_23835 PF00574 Clp protease APT56_23840 PF07690 Major Facilitator Superfamily APT56_23845 PF12833 Helix-turn-helix domain APT56_23850 PF07690 Major Facilitator Superfamily APT56_23855 PF03401 Tripartite tricarboxylate transporter family receptor APT56_23860 PF00701 Dihydrodipicolinate synthetase family APT56_23865 PF00384 Molybdopterin oxidoreductase APT56_23865 PF01568 Molydopterin dinucleotide binding domain APT56_23870 PF12697 Alpha/beta hydrolase family APT56_23875 PF13673 Acetyltransferase (GNAT) domain APT56_23880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_23880 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_23890 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_23905 PF05239 PRC-barrel domain APT56_23910 PF05957 APT56_23910 APT56_23915 PF00205 Thiamine pyrophosphate enzyme, central domain APT56_23915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT56_23915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT56_23920 PF06983 3-demethylubiquinone-9 3-methyltransferase APT56_23935 PF01545 Cation efflux family APT56_23940 PF02583 Metal-sensitive transcriptional repressor APT56_23945 PF07690 Major Facilitator Superfamily APT56_23950 PF00005 ABC transporter APT56_23950 PF00664 ABC transporter transmembrane region APT56_23955 PF00005 ABC transporter APT56_23955 PF00664 ABC transporter transmembrane region APT56_23960 PF00149 Calcineurin-like phosphoesterase APT56_23965 PF00270 DEAD/DEAH box helicase APT56_23965 PF00271 Helicase conserved C-terminal domain APT56_23965 PF08494 APT56_23965 APT56_23970 PF01068 ATP dependent DNA ligase domain APT56_23970 PF04675 DNA ligase N terminus APT56_23970 PF04679 ATP dependent DNA ligase C terminal region APT56_23980 PF12840 Helix-turn-helix domain APT56_23985 PF01758 Sodium Bile acid symporter family APT56_23990 PF03960 ArsC family APT56_23995 PF03358 NADPH-dependent FMN reductase APT56_24000 PF13098 Thioredoxin-like domain APT56_24010 PF00892 EamA-like transporter family APT56_24025 PF08212 Lipocalin-like domain APT56_24030 PF02353 Mycolic acid cyclopropane synthetase APT56_24035 PF06966 APT56_24035 APT56_24040 PF11086 APT56_24040 APT56_24045 PF02353 Mycolic acid cyclopropane synthetase APT56_24050 PF07103 APT56_24050 APT56_24055 PF01593 Flavin containing amine oxidoreductase APT56_24060 PF00487 APT56_24060 APT56_24070 PF00135 Carboxylesterase family APT56_24075 PF10099 APT56_24075 APT56_24080 PF04542 Sigma-70 region 2 APT56_24080 PF08281 Sigma-70, region 4 APT56_24085 PF00072 Response regulator receiver domain APT56_24090 PF00072 Response regulator receiver domain APT56_24090 PF00512 His Kinase A (phospho-acceptor) domain APT56_24090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_24090 PF05227 CHASE3 domain APT56_24090 PF13185 GAF domain APT56_24095 PF01739 CheR methyltransferase, SAM binding domain APT56_24095 PF03705 CheR methyltransferase, all-alpha domain APT56_24100 PF01339 CheB methylesterase APT56_24105 PF00072 Response regulator receiver domain APT56_24105 PF00512 His Kinase A (phospho-acceptor) domain APT56_24105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_24120 PF00595 PDZ domain (Also known as DHR or GLGF) APT56_24120 PF03572 Peptidase family S41 APT56_24135 PF00440 Bacterial regulatory proteins, tetR family APT56_24140 PF02585 GlcNAc-PI de-N-acetylase APT56_24150 PF01965 DJ-1/PfpI family APT56_24155 PF01965 DJ-1/PfpI family APT56_24155 PF12833 Helix-turn-helix domain APT56_24165 PF00563 EAL domain APT56_24165 PF04940 Sensors of blue-light using FAD APT56_24170 PF07690 Major Facilitator Superfamily APT56_24175 PF04342 APT56_24175 APT56_24185 PF00072 Response regulator receiver domain APT56_24185 PF00158 Sigma-54 interaction domain APT56_24185 PF02954 Bacterial regulatory protein, Fis family APT56_24190 PF00512 His Kinase A (phospho-acceptor) domain APT56_24190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_24200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_24200 PF03466 LysR substrate binding domain APT56_24205 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_24210 PF01757 APT56_24210 APT56_24215 PF00905 Penicillin binding protein transpeptidase domain APT56_24220 PF00768 D-alanyl-D-alanine carboxypeptidase APT56_24220 PF05569 BlaR1 peptidase M56 APT56_24225 PF03965 Penicillinase repressor APT56_24240 PF07791 APT56_24240 APT56_24260 PF00166 Chaperonin 10 Kd subunit APT56_24265 PF00118 TCP-1/cpn60 chaperonin family APT56_24270 PF03631 APT56_24270 APT56_24275 PF12802 MarR family APT56_24280 PF00171 Aldehyde dehydrogenase family APT56_24285 PF01042 Endoribonuclease L-PSP APT56_24290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_24290 PF03466 LysR substrate binding domain APT56_24295 PF06052 3-hydroxyanthranilic acid dioxygenase APT56_24300 PF04909 Amidohydrolase APT56_24305 PF13458 Periplasmic binding protein APT56_24310 PF02653 APT56_24310 APT56_24315 PF02653 APT56_24315 APT56_24320 PF00005 ABC transporter APT56_24320 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_24325 PF00005 ABC transporter APT56_24330 PF01232 Mannitol dehydrogenase Rossmann domain APT56_24330 PF08125 Mannitol dehydrogenase C-terminal domain APT56_24335 PF01219 Prokaryotic diacylglycerol kinase APT56_24340 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_24345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APT56_24350 PF02464 Competence-damaged protein APT56_24355 PF04608 Phosphatidylglycerophosphatase A APT56_24360 PF00586 AIR synthase related protein, N-terminal domain APT56_24360 PF02769 AIR synthase related protein, C-terminal domain APT56_24365 PF01029 NusB family APT56_24370 PF00885 6,7-dimethyl-8-ribityllumazine synthase APT56_24375 PF00925 GTP cyclohydrolase II APT56_24375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APT56_24380 PF08282 haloacid dehalogenase-like hydrolase APT56_24385 PF01614 Bacterial transcriptional regulator APT56_24385 PF09339 IclR helix-turn-helix domain APT56_24390 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein APT56_24395 PF00005 ABC transporter APT56_24400 PF00528 Binding-protein-dependent transport system inner membrane component APT56_24405 PF00528 Binding-protein-dependent transport system inner membrane component APT56_24410 PF01928 CYTH domain APT56_24410 PF05235 CHAD domain APT56_24415 PF00448 SRP54-type protein, GTPase domain APT56_24415 PF02881 SRP54-type protein, helical bundle domain APT56_24420 PF03602 Conserved hypothetical protein 95 APT56_24425 PF01467 Cytidylyltransferase APT56_24430 PF00037 4Fe-4S binding domain APT56_24435 PF03594 APT56_24435 APT56_24440 PF03476 MOSC N-terminal beta barrel domain APT56_24445 PF05170 APT56_24445 APT56_24450 PF07690 Major Facilitator Superfamily APT56_24455 PF01047 MarR family APT56_24460 PF11158 APT56_24460 APT56_24465 PF00005 ABC transporter APT56_24470 PF00593 TonB dependent receptor APT56_24470 PF07715 TonB-dependent Receptor Plug Domain APT56_24475 PF01926 50S ribosome-binding GTPase APT56_24475 PF06071 Protein of unknown function (DUF933) APT56_24480 PF02517 CAAX protease self-immunity APT56_24485 PF01195 Peptidyl-tRNA hydrolase APT56_24490 PF01386 Ribosomal L25p family APT56_24490 PF14693 Ribosomal protein TL5, C-terminal domain APT56_24495 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT56_24495 PF14572 Phosphoribosyl synthetase-associated domain APT56_24505 PF00288 GHMP kinases N terminal domain APT56_24510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT56_24510 PF00672 HAMP domain APT56_24510 PF02203 Tar ligand binding domain homologue APT56_24515 PF03550 Outer membrane lipoprotein LolB APT56_24520 PF13432 Tetratricopeptide repeat APT56_24520 PF14559 Tetratricopeptide repeat APT56_24525 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT56_24525 PF06827 Zinc finger found in FPG and IleRS APT56_24525 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT56_24530 PF00753 Metallo-beta-lactamase superfamily APT56_24535 PF01494 FAD binding domain APT56_24540 PF10932 APT56_24540 APT56_24545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_24545 PF03466 LysR substrate binding domain APT56_24550 PF04209 homogentisate 1,2-dioxygenase APT56_24555 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT56_24555 PF09298 Fumarylacetoacetase N-terminal APT56_24560 PF01553 Acyltransferase APT56_24565 PF00884 Sulfatase APT56_24570 PF00392 Bacterial regulatory proteins, gntR family APT56_24570 PF07729 FCD domain APT56_24575 PF01370 NAD dependent epimerase/dehydratase family APT56_24580 PF08450 SMP-30/Gluconolaconase/LRE-like region APT56_24585 PF03480 Bacterial extracellular solute-binding protein, family 7 APT56_24590 PF04290 APT56_24590 APT56_24595 PF06808 APT56_24595 APT56_24600 PF01569 PAP2 superfamily APT56_24605 PF00512 His Kinase A (phospho-acceptor) domain APT56_24605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_24610 PF00072 Response regulator receiver domain APT56_24610 PF00486 Transcriptional regulatory protein, C terminal APT56_24615 PF01565 FAD binding domain APT56_24615 PF02913 FAD linked oxidases, C-terminal domain APT56_24625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT56_24625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT56_24625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT56_24625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT56_24630 PF00342 Phosphoglucose isomerase APT56_24635 PF01019 Gamma-glutamyltranspeptidase APT56_24640 PF00534 Glycosyl transferases group 1 APT56_24640 PF13477 Glycosyl transferase 4-like APT56_24645 PF13439 Glycosyltransferase Family 4 APT56_24645 PF13692 Glycosyl transferases group 1 APT56_24650 PF00534 Glycosyl transferases group 1 APT56_24650 PF13579 Glycosyl transferase 4-like domain APT56_24655 PF00733 Asparagine synthase APT56_24655 PF13537 Glutamine amidotransferase domain APT56_24660 PF00534 Glycosyl transferases group 1 APT56_24660 PF13439 Glycosyltransferase Family 4 APT56_24665 PF03023 APT56_24665 APT56_24670 PF01370 NAD dependent epimerase/dehydratase family APT56_24675 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT56_24675 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT56_24675 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT56_24680 PF00953 Glycosyl transferase family 4 APT56_24685 PF03232 APT56_24685 APT56_24690 PF02566 OsmC-like protein APT56_24695 PF00303 Thymidylate synthase APT56_24700 PF00563 EAL domain APT56_24700 PF00990 GGDEF domain APT56_24700 PF03707 APT56_24700 APT56_24705 PF00186 Dihydrofolate reductase APT56_24710 PF00155 Aminotransferase class I and II APT56_24710 PF00392 Bacterial regulatory proteins, gntR family APT56_24715 PF00202 Aminotransferase class-III APT56_24720 PF00171 Aldehyde dehydrogenase family APT56_24725 PF07171 MlrC C-terminus APT56_24725 PF07364 Protein of unknown function (DUF1485) APT56_24730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT56_24735 PF00528 Binding-protein-dependent transport system inner membrane component APT56_24740 PF00528 Binding-protein-dependent transport system inner membrane component APT56_24740 PF12911 APT56_24740 APT56_24745 PF00005 ABC transporter APT56_24745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT56_24750 PF01425 Amidase APT56_24755 PF07171 MlrC C-terminus APT56_24755 PF07364 Protein of unknown function (DUF1485) APT56_24760 PF06097 APT56_24760 APT56_24760 PF10722 Putative bacterial sensory transduction regulator APT56_24765 PF02347 Glycine cleavage system P-protein APT56_24770 PF01597 Glycine cleavage H-protein APT56_24775 PF01571 Aminomethyltransferase folate-binding domain APT56_24775 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT56_24780 PF02535 APT56_24780 APT56_24785 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT56_24785 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT56_24790 PF03486 HI0933-like protein APT56_24795 PF01276 Orn/Lys/Arg decarboxylase, major domain APT56_24795 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain APT56_24795 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain APT56_24805 PF00583 Acetyltransferase (GNAT) family APT56_24810 PF00990 GGDEF domain APT56_24815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_24815 PF13673 Acetyltransferase (GNAT) domain APT56_24820 PF00692 dUTPase APT56_24825 PF04357 APT56_24825 APT56_24830 PF01103 Surface antigen APT56_24830 PF17243 APT56_24830 APT56_24835 PF01883 Domain of unknown function DUF59 APT56_24835 PF10609 ParA/MinD ATPase like APT56_24845 PF01588 Putative tRNA binding domain APT56_24845 PF09334 tRNA synthetases class I (M) APT56_24850 PF00581 Rhodanese-like domain APT56_24855 PF03724 META domain APT56_24855 PF14302 APT56_24855 APT56_24860 PF03724 META domain APT56_24865 PF01757 APT56_24865 APT56_24870 PF01381 Helix-turn-helix APT56_24875 PF00486 Transcriptional regulatory protein, C terminal APT56_24880 PF02254 TrkA-N domain APT56_24880 PF07885 Ion channel APT56_24885 PF13698 APT56_24885 APT56_24890 PF13443 Cro/C1-type HTH DNA-binding domain APT56_24905 PF00563 EAL domain APT56_24905 PF12792 APT56_24905 APT56_24910 PF00440 Bacterial regulatory proteins, tetR family APT56_24915 PF07167 APT56_24915 APT56_24920 PF02321 Outer membrane efflux protein APT56_24925 PF13437 HlyD family secretion protein APT56_24925 PF13533 Biotin-lipoyl like APT56_24930 PF00005 ABC transporter APT56_24930 PF12698 ABC-2 family transporter protein APT56_24935 PF12698 ABC-2 family transporter protein APT56_24945 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_24950 PF01654 APT56_24950 APT56_24955 PF02322 APT56_24955 APT56_24960 PF00155 Aminotransferase class I and II APT56_24960 PF00392 Bacterial regulatory proteins, gntR family APT56_24965 PF09723 APT56_24965 APT56_24970 PF03069 Acetamidase/Formamidase family APT56_24975 PF00005 ABC transporter APT56_24980 PF00005 ABC transporter APT56_24980 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_24985 PF02653 APT56_24985 APT56_24990 PF02653 APT56_24990 APT56_24995 PF13433 Periplasmic binding protein domain APT56_25000 PF00072 Response regulator receiver domain APT56_25000 PF00512 His Kinase A (phospho-acceptor) domain APT56_25000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_25005 PF00072 Response regulator receiver domain APT56_25005 PF00196 Bacterial regulatory proteins, luxR family APT56_25020 PF03401 Tripartite tricarboxylate transporter family receptor APT56_25030 PF00890 FAD binding domain APT56_25035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25035 PF03466 LysR substrate binding domain APT56_25040 PF00034 Cytochrome c APT56_25045 PF00034 Cytochrome c APT56_25050 PF00043 Glutathione S-transferase, C-terminal domain APT56_25050 PF02798 Glutathione S-transferase, N-terminal domain APT56_25055 PF07690 Major Facilitator Superfamily APT56_25060 PF06032 Protein of unknown function (DUF917) APT56_25065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25065 PF03466 LysR substrate binding domain APT56_25070 PF01979 Amidohydrolase family APT56_25075 PF01546 Peptidase family M20/M25/M40 APT56_25085 PF07859 alpha/beta hydrolase fold APT56_25090 PF01435 Peptidase family M48 APT56_25095 PF05426 Alginate lyase APT56_25110 PF00444 Ribosomal protein L36 APT56_25115 PF00392 Bacterial regulatory proteins, gntR family APT56_25115 PF07729 FCD domain APT56_25120 PF00330 Aconitase family (aconitate hydratase) APT56_25120 PF00694 Aconitase C-terminal domain APT56_25125 PF04303 PrpF protein APT56_25135 PF00206 Lyase APT56_25135 PF14698 Argininosuccinate lyase C-terminal APT56_25140 PF00512 His Kinase A (phospho-acceptor) domain APT56_25140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_25145 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_25150 PF05853 Prokaryotic protein of unknown function (DUF849) APT56_25155 PF13458 Periplasmic binding protein APT56_25160 PF00027 Cyclic nucleotide-binding domain APT56_25160 PF13545 Crp-like helix-turn-helix domain APT56_25165 PF13302 Acetyltransferase (GNAT) domain APT56_25170 PF04055 Radical SAM superfamily APT56_25175 PF01904 Protein of unknown function DUF72 APT56_25190 PF07804 HipA-like C-terminal domain APT56_25200 PF03401 Tripartite tricarboxylate transporter family receptor APT56_25205 PF00682 HMGL-like APT56_25210 PF02515 CoA-transferase family III APT56_25215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25215 PF03466 LysR substrate binding domain APT56_25220 PF02390 Putative methyltransferase APT56_25225 PF00561 alpha/beta hydrolase fold APT56_25230 PF02597 ThiS family APT56_25235 PF01476 LysM domain APT56_25235 PF04972 BON domain APT56_25240 PF00448 SRP54-type protein, GTPase domain APT56_25240 PF02881 SRP54-type protein, helical bundle domain APT56_25240 PF02978 Signal peptide binding domain APT56_25245 PF01578 APT56_25245 APT56_25255 PF01510 N-acetylmuramoyl-L-alanine amidase APT56_25260 PF00043 Glutathione S-transferase, C-terminal domain APT56_25260 PF13417 Glutathione S-transferase, N-terminal domain APT56_25280 PF03401 Tripartite tricarboxylate transporter family receptor APT56_25285 PF01370 NAD dependent epimerase/dehydratase family APT56_25290 PF00171 Aldehyde dehydrogenase family APT56_25295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25295 PF03466 LysR substrate binding domain APT56_25300 PF02321 Outer membrane efflux protein APT56_25305 PF00529 HlyD family secretion protein APT56_25310 PF00005 ABC transporter APT56_25310 PF00664 ABC transporter transmembrane region APT56_25315 PF06438 Heme-binding protein A (HasA) APT56_25320 PF00593 TonB dependent receptor APT56_25320 PF07715 TonB-dependent Receptor Plug Domain APT56_25325 PF04773 FecR protein APT56_25330 PF04542 Sigma-70 region 2 APT56_25330 PF08281 Sigma-70, region 4 APT56_25335 PF01614 Bacterial transcriptional regulator APT56_25335 PF09339 IclR helix-turn-helix domain APT56_25340 PF05035 2-keto-3-deoxy-galactonokinase APT56_25345 PF01081 KDPG and KHG aldolase APT56_25350 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT56_25350 PF13378 Enolase C-terminal domain-like APT56_25355 PF07690 Major Facilitator Superfamily APT56_25360 PF00005 ABC transporter APT56_25365 PF12679 APT56_25365 APT56_25370 PF12679 APT56_25370 APT56_25375 PF00593 TonB dependent receptor APT56_25375 PF07715 TonB-dependent Receptor Plug Domain APT56_25380 PF07690 Major Facilitator Superfamily APT56_25390 PF13560 Helix-turn-helix domain APT56_25395 PF00183 Hsp90 protein APT56_25395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_25400 PF13644 APT56_25400 APT56_25405 PF00860 Permease family APT56_25415 PF00589 Phage integrase family APT56_25430 PF00149 Calcineurin-like phosphoesterase APT56_25435 PF05713 APT56_25435 APT56_25450 PF07996 Type IV secretion system proteins APT56_25465 PF04610 APT56_25465 APT56_25480 PF05973 APT56_25480 APT56_25490 PF12779 APT56_25490 APT56_25495 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_25500 PF13616 PPIC-type PPIASE domain APT56_25505 PF00005 ABC transporter APT56_25510 PF13407 Periplasmic binding protein domain APT56_25515 PF02653 APT56_25515 APT56_25520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT56_25520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT56_25530 PF05853 Prokaryotic protein of unknown function (DUF849) APT56_25535 PF13458 Periplasmic binding protein APT56_25540 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_25545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25545 PF03466 LysR substrate binding domain APT56_25550 PF06805 APT56_25550 APT56_25565 PF06805 APT56_25565 APT56_25570 PF00877 NlpC/P60 family APT56_25570 PF14464 Prokaryotic homologs of the JAB domain APT56_25575 PF05100 APT56_25575 APT56_25580 PF05939 APT56_25580 APT56_25590 PF13227 APT56_25590 APT56_25595 PF06222 Phage tail assembly chaperone APT56_25610 PF00717 Peptidase S24-like APT56_25615 PF06742 Protein of unknown function (DUF1214) APT56_25615 PF06863 Protein of unknown function (DUF1254) APT56_25620 PF04115 Ureidoglycolate hydrolase APT56_25625 PF12167 APT56_25625 APT56_25635 PF07883 Cupin domain APT56_25640 PF07690 Major Facilitator Superfamily APT56_25650 PF00072 Response regulator receiver domain APT56_25650 PF00196 Bacterial regulatory proteins, luxR family APT56_25655 PF04542 Sigma-70 region 2 APT56_25655 PF08281 Sigma-70, region 4 APT56_25660 PF14903 APT56_25660 APT56_25665 PF14903 APT56_25665 APT56_25670 PF13714 Phosphoenolpyruvate phosphomutase APT56_25675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25675 PF03466 LysR substrate binding domain APT56_25680 PF04954 Siderophore-interacting protein APT56_25680 PF08021 Siderophore-interacting FAD-binding domain APT56_25685 PF03551 Transcriptional regulator PadR-like family APT56_25690 PF00892 EamA-like transporter family APT56_25695 PF13560 Helix-turn-helix domain APT56_25700 PF07690 Major Facilitator Superfamily APT56_25705 PF03807 NADP oxidoreductase coenzyme F420-dependent APT56_25705 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT56_25710 PF01070 FMN-dependent dehydrogenase APT56_25715 PF01565 FAD binding domain APT56_25715 PF02913 FAD linked oxidases, C-terminal domain APT56_25720 PF13416 Bacterial extracellular solute-binding protein APT56_25725 PF00005 ABC transporter APT56_25725 PF08402 TOBE domain APT56_25730 PF00528 Binding-protein-dependent transport system inner membrane component APT56_25735 PF00701 Dihydrodipicolinate synthetase family APT56_25740 PF01614 Bacterial transcriptional regulator APT56_25740 PF09339 IclR helix-turn-helix domain APT56_25745 PF05721 Phytanoyl-CoA dioxygenase (PhyH) APT56_25750 PF01594 APT56_25750 APT56_25755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25755 PF03466 LysR substrate binding domain APT56_25760 PF16576 APT56_25760 APT56_25765 PF00873 AcrB/AcrD/AcrF family APT56_25770 PF02321 Outer membrane efflux protein APT56_25775 PF05229 APT56_25775 APT56_25780 PF00577 Outer membrane usher protein APT56_25785 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain APT56_25790 PF05229 APT56_25790 APT56_25795 PF05229 APT56_25795 APT56_25800 PF05229 APT56_25800 APT56_25805 PF02834 LigT like Phosphoesterase APT56_25810 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) APT56_25815 PF03447 Homoserine dehydrogenase, NAD binding domain APT56_25820 PF00392 Bacterial regulatory proteins, gntR family APT56_25820 PF07729 FCD domain APT56_25825 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_25830 PF08501 Shikimate dehydrogenase substrate binding domain APT56_25835 PF13458 Periplasmic binding protein APT56_25840 PF02653 APT56_25840 APT56_25845 PF02653 APT56_25845 APT56_25850 PF00005 ABC transporter APT56_25850 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_25855 PF00005 ABC transporter APT56_25860 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_25865 PF00676 Dehydrogenase E1 component APT56_25865 PF02779 Transketolase, pyrimidine binding domain APT56_25865 PF02780 Transketolase, C-terminal domain APT56_25870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT56_25875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT56_25875 PF00364 Biotin-requiring enzyme APT56_25875 PF02817 e3 binding domain APT56_25880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT56_25880 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_25885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25885 PF03466 LysR substrate binding domain APT56_25890 PF00920 Dehydratase family APT56_25895 PF12833 Helix-turn-helix domain APT56_25900 PF00682 HMGL-like APT56_25905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_25905 PF03466 LysR substrate binding domain APT56_25910 PF13420 Acetyltransferase (GNAT) domain APT56_25915 PF07690 Major Facilitator Superfamily APT56_25925 PF06508 Queuosine biosynthesis protein QueC APT56_25930 PF00311 Phosphoenolpyruvate carboxylase APT56_25935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT56_25935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT56_25940 PF02667 APT56_25940 APT56_25945 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_25950 PF01614 Bacterial transcriptional regulator APT56_25950 PF09339 IclR helix-turn-helix domain APT56_25955 PF01144 Coenzyme A transferase APT56_25960 PF01144 Coenzyme A transferase APT56_25965 PF02426 Muconolactone delta-isomerase APT56_25970 PF03795 YCII-related domain APT56_25975 PF00561 alpha/beta hydrolase fold APT56_25980 PF04199 Putative cyclase APT56_25985 PF07769 APT56_25985 APT56_25995 PF00484 Carbonic anhydrase APT56_26000 PF00392 Bacterial regulatory proteins, gntR family APT56_26000 PF07729 FCD domain APT56_26005 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_26010 PF13458 Periplasmic binding protein APT56_26015 PF02653 APT56_26015 APT56_26020 PF02653 APT56_26020 APT56_26025 PF00005 ABC transporter APT56_26025 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_26030 PF00005 ABC transporter APT56_26035 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_26040 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_26045 PF00890 FAD binding domain APT56_26050 PF13410 Glutathione S-transferase, C-terminal domain APT56_26050 PF13417 Glutathione S-transferase, N-terminal domain APT56_26060 PF11299 APT56_26060 APT56_26065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26065 PF03466 LysR substrate binding domain APT56_26070 PF11174 APT56_26070 APT56_26075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26075 PF03466 LysR substrate binding domain APT56_26080 PF07690 Major Facilitator Superfamily APT56_26085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT56_26085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT56_26090 PF06073 APT56_26090 APT56_26095 PF01614 Bacterial transcriptional regulator APT56_26095 PF09339 IclR helix-turn-helix domain APT56_26100 PF03401 Tripartite tricarboxylate transporter family receptor APT56_26105 PF00501 AMP-binding enzyme APT56_26105 PF13193 AMP-binding enzyme C-terminal domain APT56_26110 PF00285 Citrate synthase APT56_26115 PF13561 Enoyl-(Acyl carrier protein) reductase APT56_26120 PF03079 ARD/ARD' family APT56_26125 PF03180 NLPA lipoprotein APT56_26135 PF02441 Flavoprotein APT56_26140 PF00462 Glutaredoxin APT56_26145 PF05175 Methyltransferase small domain APT56_26150 PF00472 RF-1 domain APT56_26150 PF03462 PCRF domain APT56_26155 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APT56_26155 PF01488 Shikimate / quinate 5-dehydrogenase APT56_26155 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APT56_26165 PF01810 APT56_26165 APT56_26170 PF01037 AsnC family APT56_26170 PF13404 AsnC-type helix-turn-helix domain APT56_26175 PF01810 APT56_26175 APT56_26180 PF00892 EamA-like transporter family APT56_26185 PF03401 Tripartite tricarboxylate transporter family receptor APT56_26190 PF01261 Xylose isomerase-like TIM barrel APT56_26195 PF00593 TonB dependent receptor APT56_26195 PF07715 TonB-dependent Receptor Plug Domain APT56_26200 PF10994 Protein of unknown function (DUF2817) APT56_26205 PF07690 Major Facilitator Superfamily APT56_26210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26210 PF03466 LysR substrate binding domain APT56_26215 PF00392 Bacterial regulatory proteins, gntR family APT56_26215 PF07729 FCD domain APT56_26220 PF07005 Protein of unknown function, DUF1537 APT56_26220 PF17042 APT56_26220 APT56_26225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT56_26225 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT56_26230 PF01370 NAD dependent epimerase/dehydratase family APT56_26235 PF01261 Xylose isomerase-like TIM barrel APT56_26240 PF00596 Class II Aldolase and Adducin N-terminal domain APT56_26255 PF00561 alpha/beta hydrolase fold APT56_26260 PF13411 MerR HTH family regulatory protein APT56_26265 PF03606 APT56_26265 APT56_26270 PF13354 Beta-lactamase enzyme family APT56_26275 PF00795 Carbon-nitrogen hydrolase APT56_26280 PF07690 Major Facilitator Superfamily APT56_26285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26285 PF03466 LysR substrate binding domain APT56_26290 PF00501 AMP-binding enzyme APT56_26290 PF13193 AMP-binding enzyme C-terminal domain APT56_26295 PF00106 short chain dehydrogenase APT56_26300 PF00108 Thiolase, N-terminal domain APT56_26300 PF02803 Thiolase, C-terminal domain APT56_26305 PF02264 LamB porin APT56_26315 PF00348 Polyprenyl synthetase APT56_26320 PF00829 Ribosomal prokaryotic L21 protein APT56_26325 PF01016 Ribosomal L27 protein APT56_26330 PF01018 GTP1/OBG APT56_26330 PF01926 50S ribosome-binding GTPase APT56_26335 PF00696 Amino acid kinase family APT56_26335 PF01472 PUA domain APT56_26340 PF00486 Transcriptional regulatory protein, C terminal APT56_26345 PF01381 Helix-turn-helix APT56_26355 PF01964 ThiC family APT56_26355 PF13667 ThiC-associated domain APT56_26360 PF01565 FAD binding domain APT56_26360 PF02913 FAD linked oxidases, C-terminal domain APT56_26365 PF00392 Bacterial regulatory proteins, gntR family APT56_26365 PF07729 FCD domain APT56_26370 PF00990 GGDEF domain APT56_26375 PF00899 ThiF family APT56_26380 PF03572 Peptidase family S41 APT56_26380 PF13180 PDZ domain APT56_26385 PF01551 Peptidase family M23 APT56_26390 PF00300 Histidine phosphatase superfamily (branch 1) APT56_26395 PF00581 Rhodanese-like domain APT56_26400 PF00462 Glutaredoxin APT56_26405 PF02556 Preprotein translocase subunit SecB APT56_26410 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APT56_26410 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APT56_26415 PF03401 Tripartite tricarboxylate transporter family receptor APT56_26420 PF00588 SpoU rRNA Methylase family APT56_26425 PF00156 Phosphoribosyl transferase domain APT56_26430 PF08241 Methyltransferase domain APT56_26435 PF04107 Glutamate-cysteine ligase family 2(GCS2) APT56_26440 PF02386 Cation transport protein APT56_26445 PF02080 TrkA-C domain APT56_26445 PF02254 TrkA-N domain APT56_26450 PF00072 Response regulator receiver domain APT56_26455 PF00512 His Kinase A (phospho-acceptor) domain APT56_26455 PF00672 HAMP domain APT56_26455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_26455 PF08448 PAS fold APT56_26460 PF14334 APT56_26460 APT56_26465 PF01189 NOL1/NOP2/sun family APT56_26470 PF01810 APT56_26470 APT56_26475 PF00919 Uncharacterized protein family UPF0004 APT56_26475 PF04055 Radical SAM superfamily APT56_26480 PF00893 Small Multidrug Resistance protein APT56_26485 PF01638 HxlR-like helix-turn-helix APT56_26490 PF00210 Ferritin-like domain APT56_26495 PF03641 Possible lysine decarboxylase APT56_26505 PF13419 Haloacid dehalogenase-like hydrolase APT56_26510 PF01928 CYTH domain APT56_26515 PF00551 Formyl transferase APT56_26515 PF02911 Formyl transferase, C-terminal domain APT56_26520 PF01327 Polypeptide deformylase APT56_26525 PF02481 DNA recombination-mediator protein A APT56_26530 PF00682 HMGL-like APT56_26540 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT56_26545 PF00155 Aminotransferase class I and II APT56_26550 PF01168 Alanine racemase, N-terminal domain APT56_26555 PF03401 Tripartite tricarboxylate transporter family receptor APT56_26560 PF01841 Transglutaminase-like superfamily APT56_26560 PF12969 Domain of Unknown Function with PDB structure (DUF3857) APT56_26565 PF01565 FAD binding domain APT56_26565 PF02754 APT56_26565 APT56_26565 PF02913 FAD linked oxidases, C-terminal domain APT56_26565 PF11880 APT56_26565 APT56_26565 PF12447 APT56_26565 APT56_26565 PF13183 4Fe-4S dicluster domain APT56_26570 PF09335 APT56_26570 APT56_26575 PF00291 Pyridoxal-phosphate dependent enzyme APT56_26575 PF00585 C-terminal regulatory domain of Threonine dehydratase APT56_26580 PF13609 Gram-negative porin APT56_26585 PF13663 APT56_26585 APT56_26590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26590 PF03466 LysR substrate binding domain APT56_26595 PF00156 Phosphoribosyl transferase domain APT56_26600 PF00005 ABC transporter APT56_26600 PF00664 ABC transporter transmembrane region APT56_26605 PF00005 ABC transporter APT56_26605 PF00664 ABC transporter transmembrane region APT56_26610 PF08173 APT56_26610 APT56_26615 PF02322 APT56_26615 APT56_26620 PF01654 APT56_26620 APT56_26625 PF12802 MarR family APT56_26630 PF01370 NAD dependent epimerase/dehydratase family APT56_26630 PF02222 ATP-grasp domain APT56_26635 PF00571 CBS domain APT56_26635 PF01380 SIS domain APT56_26640 PF08282 haloacid dehalogenase-like hydrolase APT56_26645 PF06835 Lipopolysaccharide-assembly, LptC-related APT56_26650 PF03968 OstA-like protein APT56_26655 PF00005 ABC transporter APT56_26655 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_26660 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APT56_26665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APT56_26670 PF02603 HPr Serine kinase N terminus APT56_26670 PF07475 HPr Serine kinase C-terminal domain APT56_26675 PF00155 Aminotransferase class I and II APT56_26675 PF00392 Bacterial regulatory proteins, gntR family APT56_26680 PF00034 Cytochrome c APT56_26680 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_26685 PF00034 Cytochrome c APT56_26690 PF03668 APT56_26690 APT56_26695 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel APT56_26695 PF05036 Sporulation related domain APT56_26700 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT56_26705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT56_26710 PF02021 Uncharacterised protein family UPF0102 APT56_26715 PF13580 SIS domain APT56_26720 PF04972 BON domain APT56_26725 PF08534 Redoxin APT56_26730 PF03180 NLPA lipoprotein APT56_26735 PF00696 Amino acid kinase family APT56_26740 PF13419 Haloacid dehalogenase-like hydrolase APT56_26745 PF00440 Bacterial regulatory proteins, tetR family APT56_26750 PF00939 Sodium:sulfate symporter transmembrane region APT56_26755 PF02615 Malate/L-lactate dehydrogenase APT56_26760 PF01098 APT56_26760 APT56_26765 PF00905 Penicillin binding protein transpeptidase domain APT56_26765 PF03717 Penicillin-binding Protein dimerisation domain APT56_26770 PF04093 APT56_26770 APT56_26775 PF04085 rod shape-determining protein MreC APT56_26780 PF06723 MreB/Mbl protein APT56_26785 PF02686 Glu-tRNAGln amidotransferase C subunit APT56_26790 PF01425 Amidase APT56_26795 PF02637 GatB domain APT56_26795 PF02934 GatB/GatE catalytic domain APT56_26805 PF00156 Phosphoribosyl transferase domain APT56_26810 PF03372 Endonuclease/Exonuclease/phosphatase family APT56_26815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT56_26815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APT56_26820 PF04314 Protein of unknown function (DUF461) APT56_26825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26825 PF03466 LysR substrate binding domain APT56_26830 PF01810 APT56_26830 APT56_26835 PF03992 Antibiotic biosynthesis monooxygenase APT56_26840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_26840 PF03466 LysR substrate binding domain APT56_26845 PF13458 Periplasmic binding protein APT56_26850 PF02653 APT56_26850 APT56_26855 PF00005 ABC transporter APT56_26855 PF02653 APT56_26855 APT56_26855 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_26860 PF00005 ABC transporter APT56_26865 PF02566 OsmC-like protein APT56_26870 PF01047 MarR family APT56_26875 PF00027 Cyclic nucleotide-binding domain APT56_26875 PF13545 Crp-like helix-turn-helix domain APT56_26880 PF00501 AMP-binding enzyme APT56_26890 PF02653 APT56_26890 APT56_26895 PF02653 APT56_26895 APT56_26900 PF13458 Periplasmic binding protein APT56_26905 PF00005 ABC transporter APT56_26910 PF00501 AMP-binding enzyme APT56_26915 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT56_26920 PF04143 APT56_26920 APT56_26930 PF01022 Bacterial regulatory protein, arsR family APT56_26935 PF00753 Metallo-beta-lactamase superfamily APT56_26940 PF03976 Polyphosphate kinase 2 (PPK2) APT56_26945 PF00583 Acetyltransferase (GNAT) family APT56_26950 PF01230 HIT domain APT56_26955 PF00534 Glycosyl transferases group 1 APT56_26955 PF13439 Glycosyltransferase Family 4 APT56_26960 PF06965 Na+/H+ antiporter 1 APT56_26965 PF04343 APT56_26965 APT56_26970 PF07007 Protein of unknown function (DUF1311) APT56_26980 PF01520 N-acetylmuramoyl-L-alanine amidase APT56_26985 PF00106 short chain dehydrogenase APT56_26990 PF03070 TENA/THI-4/PQQC family APT56_27010 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT56_27010 PF08479 POTRA domain, ShlB-type APT56_27010 PF17287 APT56_27010 APT56_27015 PF03167 Uracil DNA glycosylase superfamily APT56_27020 PF00270 DEAD/DEAH box helicase APT56_27020 PF00271 Helicase conserved C-terminal domain APT56_27025 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase APT56_27030 PF01743 Poly A polymerase head domain APT56_27030 PF12627 Probable RNA and SrmB- binding site of polymerase A APT56_27035 PF01464 Transglycosylase SLT domain APT56_27035 PF14718 Soluble lytic murein transglycosylase L domain APT56_27040 PF01812 5-formyltetrahydrofolate cyclo-ligase family APT56_27045 PF14403 APT56_27045 APT56_27050 PF04168 APT56_27050 APT56_27055 PF01841 Transglutaminase-like superfamily APT56_27055 PF08379 APT56_27055 APT56_27060 PF00227 Proteasome subunit APT56_27065 PF03401 Tripartite tricarboxylate transporter family receptor APT56_27070 PF02219 Methylenetetrahydrofolate reductase APT56_27075 PF04020 APT56_27075 APT56_27080 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APT56_27080 PF05221 S-adenosyl-L-homocysteine hydrolase APT56_27085 PF00534 Glycosyl transferases group 1 APT56_27085 PF13439 Glycosyltransferase Family 4 APT56_27090 PF06945 APT56_27090 APT56_27095 PF00561 alpha/beta hydrolase fold APT56_27100 PF00694 Aconitase C-terminal domain APT56_27105 PF00330 Aconitase family (aconitate hydratase) APT56_27110 PF03401 Tripartite tricarboxylate transporter family receptor APT56_27115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT56_27115 PF03466 LysR substrate binding domain APT56_27120 PF01613 Flavin reductase like domain APT56_27125 PF00392 Bacterial regulatory proteins, gntR family APT56_27125 PF07729 FCD domain APT56_27130 PF01522 Polysaccharide deacetylase APT56_27135 PF13458 Periplasmic binding protein APT56_27140 PF02653 APT56_27140 APT56_27145 PF00005 ABC transporter APT56_27145 PF02653 APT56_27145 APT56_27150 PF09339 IclR helix-turn-helix domain APT56_27150 PF13404 AsnC-type helix-turn-helix domain APT56_27155 PF07690 Major Facilitator Superfamily APT56_27160 PF01425 Amidase APT56_27165 PF00438 S-adenosylmethionine synthetase, N-terminal domain APT56_27165 PF02772 S-adenosylmethionine synthetase, central domain APT56_27165 PF02773 S-adenosylmethionine synthetase, C-terminal domain APT56_27170 PF03279 APT56_27170 APT56_27175 PF03279 APT56_27175 APT56_27180 PF01678 Diaminopimelate epimerase APT56_27185 PF04340 Protein of unknown function, DUF484 APT56_27190 PF00589 Phage integrase family APT56_27190 PF02899 Phage integrase, N-terminal SAM-like domain APT56_27195 PF03824 APT56_27195 APT56_27200 PF06226 APT56_27200 APT56_27205 PF01297 Periplasmic solute binding protein family APT56_27210 PF00950 APT56_27210 APT56_27215 PF00005 ABC transporter APT56_27220 PF01475 Ferric uptake regulator family APT56_27225 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT56_27225 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT56_27230 PF01258 Prokaryotic dksA/traR C4-type zinc finger APT56_27235 PF00227 Proteasome subunit APT56_27240 PF00004 ATPase family associated with various cellular activities (AAA) APT56_27240 PF07724 AAA domain (Cdc48 subfamily) APT56_27240 PF10431 C-terminal, D2-small domain, of ClpB protein APT56_27245 PF11604 Copper binding periplasmic protein CusF APT56_27250 PF01923 Cobalamin adenosyltransferase APT56_27255 PF04055 Radical SAM superfamily APT56_27255 PF16881 APT56_27255 APT56_27260 PF13377 Periplasmic binding protein-like domain APT56_27265 PF08238 Sel1 repeat APT56_27270 PF03099 Biotin/lipoate A/B protein ligase family APT56_27275 PF04359 Protein of unknown function (DUF493) APT56_27280 PF01063 Aminotransferase class IV APT56_27285 PF00768 D-alanyl-D-alanine carboxypeptidase APT56_27285 PF07943 Penicillin-binding protein 5, C-terminal domain APT56_27290 PF12695 Alpha/beta hydrolase family APT56_27295 PF03886 Protein of unknown function (DUF330) APT56_27300 PF02470 APT56_27300 APT56_27305 PF00005 ABC transporter APT56_27310 PF02405 APT56_27310 APT56_27315 PF02237 Biotin protein ligase C terminal domain APT56_27315 PF03099 Biotin/lipoate A/B protein ligase family APT56_27320 PF03309 Type III pantothenate kinase APT56_27325 PF00534 Glycosyl transferases group 1 APT56_27325 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APT56_27330 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT56_27335 PF02585 GlcNAc-PI de-N-acetylase APT56_27340 PF16363 APT56_27340 APT56_27345 PF00535 Glycosyl transferase family 2 APT56_27350 PF00535 Glycosyl transferase family 2 APT56_27350 PF13692 Glycosyl transferases group 1 APT56_27355 PF00535 Glycosyl transferase family 2 APT56_27355 PF13692 Glycosyl transferases group 1 APT56_27365 PF00005 ABC transporter APT56_27365 PF14524 Wzt C-terminal domain APT56_27370 PF01061 APT56_27370 APT56_27375 PF00534 Glycosyl transferases group 1 APT56_27390 PF00535 Glycosyl transferase family 2 APT56_27395 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) APT56_27400 PF07690 Major Facilitator Superfamily APT56_27405 PF00892 EamA-like transporter family APT56_27410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APT56_27415 PF00483 Nucleotidyl transferase APT56_27420 PF16363 APT56_27420 APT56_27425 PF13091 PLD-like domain APT56_27430 PF03372 Endonuclease/Exonuclease/phosphatase family APT56_27435 PF00152 tRNA synthetases class II (D, K and N) APT56_27435 PF01336 OB-fold nucleic acid binding domain APT56_27435 PF02938 GAD domain APT56_27440 PF04367 APT56_27440 APT56_27445 PF09723 APT56_27445 APT56_27450 PF07399 APT56_27450 APT56_27460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT56_27460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT56_27460 PF14518 Iron-containing redox enzyme APT56_27465 PF00487 APT56_27465 APT56_27470 PF04116 APT56_27470 APT56_27475 PF00701 Dihydrodipicolinate synthetase family APT56_27480 PF13185 GAF domain APT56_27485 PF00155 Aminotransferase class I and II APT56_27490 PF01040 UbiA prenyltransferase family APT56_27495 PF06476 APT56_27495 APT56_27500 PF13663 APT56_27500 APT56_27505 PF03435 Saccharopine dehydrogenase APT56_27505 PF16653 APT56_27505 APT56_27510 PF00392 Bacterial regulatory proteins, gntR family APT56_27510 PF07729 FCD domain APT56_27515 PF01274 Malate synthase APT56_27520 PF00440 Bacterial regulatory proteins, tetR family APT56_27530 PF00440 Bacterial regulatory proteins, tetR family APT56_27535 PF13663 APT56_27535 APT56_27540 PF13663 APT56_27540 APT56_27545 PF08241 Methyltransferase domain APT56_27550 PF00436 Single-strand binding protein family APT56_27555 PF07690 Major Facilitator Superfamily APT56_27565 PF13417 Glutathione S-transferase, N-terminal domain APT56_27570 PF01966 HD domain APT56_27570 PF13286 Phosphohydrolase-associated domain APT56_27575 PF01761 3-dehydroquinate synthase APT56_27580 PF01202 Shikimate kinase APT56_27585 PF00905 Penicillin binding protein transpeptidase domain APT56_27585 PF00912 Transglycosylase APT56_27585 PF17092 APT56_27585 APT56_27590 PF13518 Helix-turn-helix domain APT56_27595 PF00665 Integrase core domain APT56_27600 PF01491 Frataxin-like domain APT56_27605 PF13627 APT56_27605 APT56_27610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT56_27610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT56_27615 PF01578 APT56_27615 APT56_27620 PF05140 APT56_27620 APT56_27625 PF00034 Cytochrome c APT56_27625 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT56_27630 PF01926 50S ribosome-binding GTPase APT56_27635 PF00490 Delta-aminolevulinic acid dehydratase APT56_27640 PF00892 EamA-like transporter family APT56_27645 PF02683 APT56_27645 APT56_27645 PF11412 Disulphide bond corrector protein DsbC APT56_27645 PF13899 Thioredoxin-like APT56_27650 PF03091 CutA1 divalent ion tolerance protein APT56_27655 PF01230 HIT domain APT56_27660 PF01196 Ribosomal protein L17 APT56_27665 PF01000 RNA polymerase Rpb3/RpoA insert domain APT56_27665 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APT56_27665 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APT56_27670 PF00163 Ribosomal protein S4/S9 N-terminal domain APT56_27670 PF01479 S4 domain APT56_27675 PF00411 Ribosomal protein S11 APT56_27680 PF00416 Ribosomal protein S13/S18 APT56_27685 PF01176 Translation initiation factor 1A / IF-1 APT56_27690 PF00344 SecY translocase APT56_27695 PF00828 Ribosomal protein L18e/L15 APT56_27700 PF00327 Ribosomal protein L30p/L7e APT56_27705 PF00333 Ribosomal protein S5, N-terminal domain APT56_27705 PF03719 Ribosomal protein S5, C-terminal domain APT56_27710 PF00861 Ribosomal L18p/L5e family APT56_27715 PF00347 Ribosomal protein L6 APT56_27720 PF00410 Ribosomal protein S8 APT56_27725 PF00253 Ribosomal protein S14p/S29e APT56_27730 PF00281 Ribosomal protein L5 APT56_27730 PF00673 ribosomal L5P family C-terminus APT56_27735 PF17136 APT56_27735 APT56_27740 PF00238 Ribosomal protein L14p/L23e APT56_27745 PF05118 Aspartyl/Asparaginyl beta-hydroxylase APT56_27750 PF00171 Aldehyde dehydrogenase family APT56_27755 PF00149 Calcineurin-like phosphoesterase APT56_27760 PF12833 Helix-turn-helix domain APT56_27760 PF14525 APT56_27760 APT56_27765 PF00561 alpha/beta hydrolase fold APT56_27770 PF13458 Periplasmic binding protein APT56_27775 PF00005 ABC transporter APT56_27775 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT56_27780 PF00005 ABC transporter APT56_27785 PF02653 APT56_27785 APT56_27790 PF02653 APT56_27790 APT56_27800 PF00366 Ribosomal protein S17 APT56_27805 PF00831 Ribosomal L29 protein APT56_27810 PF00252 Ribosomal protein L16p/L10e APT56_27815 PF00189 Ribosomal protein S3, C-terminal domain APT56_27815 PF07650 KH domain APT56_27820 PF00237 Ribosomal protein L22p/L17e APT56_27825 PF00203 Ribosomal protein S19 APT56_27830 PF00181 Ribosomal Proteins L2, RNA binding domain APT56_27830 PF03947 Ribosomal Proteins L2, C-terminal domain APT56_27835 PF00276 Ribosomal protein L23 APT56_27840 PF00573 Ribosomal protein L4/L1 family APT56_27845 PF00297 Ribosomal protein L3 APT56_27850 PF00338 Ribosomal protein S10p/S20e APT56_27855 PF00009 Elongation factor Tu GTP binding domain APT56_27855 PF03143 Elongation factor Tu C-terminal domain APT56_27855 PF03144 Elongation factor Tu domain 2 APT56_27860 PF00009 Elongation factor Tu GTP binding domain APT56_27860 PF00679 Elongation factor G C-terminus APT56_27860 PF03144 Elongation factor Tu domain 2 APT56_27860 PF03764 Elongation factor G, domain IV APT56_27860 PF14492 Elongation Factor G, domain II APT56_27865 PF00177 Ribosomal protein S7p/S5e APT56_27870 PF00164 Ribosomal protein S12/S23 APT56_27875 PF00072 Response regulator receiver domain APT56_27875 PF00486 Transcriptional regulatory protein, C terminal APT56_27880 PF00072 Response regulator receiver domain APT56_27880 PF00486 Transcriptional regulatory protein, C terminal APT56_27885 PF01476 LysM domain APT56_27885 PF04773 FecR protein APT56_27890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT56_27890 PF05226 APT56_27890