APT56_00030 SM00649 Ribosomal protein L11/L12 APT56_00035 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. APT56_00035 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. APT56_00080 SM01230 APT56_00080 APT56_00095 SM00382 ATPases associated with a variety of cellular activities APT56_00105 SM00420 helix_turn_helix, Deoxyribose operon repressor APT56_00105 SM01134 APT56_00105 APT56_00115 SM00450 Rhodanese Homology Domain APT56_00135 SM00870 APT56_00135 APT56_00140 SM00470 ParB-like nuclease domain APT56_00160 SM01228 APT56_00160 APT56_00165 SM00357 Cold shock protein domain APT56_00195 SM00387 Histidine kinase-like ATPases APT56_00195 SM00388 His Kinase A (phosphoacceptor) domain APT56_00200 SM00448 cheY-homologous receiver domain APT56_00200 SM00862 Transcriptional regulatory protein, C terminal APT56_00235 SM00382 ATPases associated with a variety of cellular activities APT56_00240 SM00382 ATPases associated with a variety of cellular activities APT56_00265 SM01060 APT56_00265 APT56_00285 SM00382 ATPases associated with a variety of cellular activities APT56_00285 SM00760 Bacterial dnaA protein helix-turn-helix domain APT56_00290 SM00480 DNA polymerase III beta subunit APT56_00295 SM00387 Histidine kinase-like ATPases APT56_00295 SM00433 TopoisomeraseII APT56_00340 SM00062 Bacterial periplasmic substrate-binding proteins APT56_00355 SM00382 ATPases associated with a variety of cellular activities APT56_00385 SM00346 helix_turn_helix isocitrate lyase regulation APT56_00390 SM00382 ATPases associated with a variety of cellular activities APT56_00430 SM00342 helix_turn_helix, arabinose operon control protein APT56_00430 SM00871 Bacterial transcription activator, effector binding domain APT56_00455 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_00455 SM00866 APT56_00455 APT56_00465 SM00382 ATPases associated with a variety of cellular activities APT56_00510 SM00912 haemagglutination activity domain APT56_00545 SM00382 ATPases associated with a variety of cellular activities APT56_00555 SM00450 Rhodanese Homology Domain APT56_00575 SM00903 Flavin reductase like domain APT56_00600 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain APT56_00610 SM00344 helix_turn_helix ASNC type APT56_00620 SM00822 APT56_00620 APT56_00630 SM00382 ATPases associated with a variety of cellular activities APT56_00640 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain APT56_00640 SM00437 Bacterial DNA topoisomerase I DNA-binding domain APT56_00640 SM00493 APT56_00640 APT56_00670 SM01119 APT56_00670 APT56_00675 SM00382 ATPases associated with a variety of cellular activities APT56_00690 SM00062 Bacterial periplasmic substrate-binding proteins APT56_00715 SM00490 helicase superfamily c-terminal domain APT56_00730 SM00342 helix_turn_helix, arabinose operon control protein APT56_00755 SM00912 haemagglutination activity domain APT56_00795 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_00815 SM00878 Biotin carboxylase C-terminal domain APT56_00815 SM01209 APT56_00815 APT56_00860 SM00422 helix_turn_helix, mercury resistance APT56_00865 SM00849 Metallo-beta-lactamase superfamily APT56_00905 SM00836 DALR anticodon binding domain APT56_00905 SM01016 Arginyl tRNA synthetase N terminal dom APT56_00935 SM00382 ATPases associated with a variety of cellular activities APT56_00945 SM00354 helix_turn _helix lactose operon repressor APT56_00955 SM00917 LeuA allosteric (dimerisation) domain APT56_01010 SM00487 DEAD-like helicases superfamily APT56_01010 SM00490 helicase superfamily c-terminal domain APT56_01030 SM00382 ATPases associated with a variety of cellular activities APT56_01060 SM00342 helix_turn_helix, arabinose operon control protein APT56_01120 SM00671 Sel1-like repeats. APT56_01160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APT56_01165 SM00530 Helix-turn-helix XRE-family like proteins APT56_01250 SM00382 ATPases associated with a variety of cellular activities APT56_01275 SM00382 ATPases associated with a variety of cellular activities APT56_01320 SM00878 Biotin carboxylase C-terminal domain APT56_01325 SM00796 Allophanate hydrolase subunit 1 APT56_01330 SM00797 Allophanate hydrolase subunit 2 APT56_01385 SM00100 Cyclic nucleotide-monophosphate binding domain APT56_01470 SM00984 UDP binding domain APT56_01480 SM00344 helix_turn_helix ASNC type APT56_01495 SM00342 helix_turn_helix, arabinose operon control protein APT56_01510 SM00903 Flavin reductase like domain APT56_01565 SM00052 Putative diguanylate phosphodiesterase APT56_01565 SM00091 PAS domain APT56_01565 SM00267 diguanylate cyclase APT56_01625 SM00448 cheY-homologous receiver domain APT56_01625 SM00862 Transcriptional regulatory protein, C terminal APT56_01630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_01630 SM00387 Histidine kinase-like ATPases APT56_01630 SM00388 His Kinase A (phosphoacceptor) domain APT56_01645 SM00829 Enoylreductase APT56_01655 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_01655 SM00866 APT56_01655 APT56_01690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_01690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_01700 SM00972 Spore Coat Protein U domain APT56_01715 SM00972 Spore Coat Protein U domain APT56_01750 SM01236 APT56_01750 APT56_01770 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_01770 SM00895 APT56_01770 APT56_01805 SM00382 ATPases associated with a variety of cellular activities APT56_01855 SM00062 Bacterial periplasmic substrate-binding proteins APT56_01875 SM00382 ATPases associated with a variety of cellular activities APT56_01890 SM00382 ATPases associated with a variety of cellular activities APT56_01925 SM00926 Molybdopterin oxidoreductase Fe4S4 domain APT56_01975 SM00460 Transglutaminase/protease-like homologues APT56_02015 SM00382 ATPases associated with a variety of cellular activities APT56_02055 SM00925 MltA specific insert domain APT56_02080 SM00905 Dihydroneopterin aldolase APT56_02115 SM00882 Coenzyme A transferase APT56_02120 SM00882 Coenzyme A transferase APT56_02130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APT56_02180 SM00382 ATPases associated with a variety of cellular activities APT56_02200 SM00487 DEAD-like helicases superfamily APT56_02200 SM00490 helicase superfamily c-terminal domain APT56_02210 SM00342 helix_turn_helix, arabinose operon control protein APT56_02230 SM00342 helix_turn_helix, arabinose operon control protein APT56_02255 SM00382 ATPases associated with a variety of cellular activities APT56_02260 SM00382 ATPases associated with a variety of cellular activities APT56_02355 SM00421 helix_turn_helix, Lux Regulon APT56_02405 SM00382 ATPases associated with a variety of cellular activities APT56_02410 SM00382 ATPases associated with a variety of cellular activities APT56_02420 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_02420 SM00895 APT56_02420 APT56_02465 SM00421 helix_turn_helix, Lux Regulon APT56_02505 SM00858 APT56_02505 APT56_02510 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_02510 SM00866 APT56_02510 APT56_02540 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_02540 SM00895 APT56_02540 APT56_02550 SM00797 Allophanate hydrolase subunit 2 APT56_02555 SM00796 Allophanate hydrolase subunit 1 APT56_02570 SM00530 Helix-turn-helix XRE-family like proteins APT56_02615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_02615 SM00387 Histidine kinase-like ATPases APT56_02615 SM00388 His Kinase A (phosphoacceptor) domain APT56_02620 SM00448 cheY-homologous receiver domain APT56_02620 SM00862 Transcriptional regulatory protein, C terminal APT56_02625 SM00387 Histidine kinase-like ATPases APT56_02625 SM00388 His Kinase A (phosphoacceptor) domain APT56_02630 SM00448 cheY-homologous receiver domain APT56_02630 SM00862 Transcriptional regulatory protein, C terminal APT56_02640 SM00978 APT56_02640 APT56_02695 SM01018 B12 binding domain APT56_02700 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_02700 SM00895 APT56_02700 APT56_02715 SM00829 Enoylreductase APT56_02730 SM00382 ATPases associated with a variety of cellular activities APT56_02735 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APT56_02750 SM00530 Helix-turn-helix XRE-family like proteins APT56_02755 SM00478 endonuclease III APT56_02770 SM00342 helix_turn_helix, arabinose operon control protein APT56_02785 SM00382 ATPases associated with a variety of cellular activities APT56_02790 SM00062 Bacterial periplasmic substrate-binding proteins APT56_02805 SM00382 ATPases associated with a variety of cellular activities APT56_02840 SM00830 Chorismate mutase type II APT56_02895 SM00421 helix_turn_helix, Lux Regulon APT56_02975 SM00382 ATPases associated with a variety of cellular activities APT56_03005 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_03025 SM00382 ATPases associated with a variety of cellular activities APT56_03030 SM00382 ATPases associated with a variety of cellular activities APT56_03035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_03035 SM00331 Sigma factor PP2C-like phosphatases APT56_03050 SM00267 diguanylate cyclase APT56_03055 SM00052 Putative diguanylate phosphodiesterase APT56_03055 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APT56_03055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APT56_03055 SM00091 PAS domain APT56_03055 SM00267 diguanylate cyclase APT56_03095 SM00342 helix_turn_helix, arabinose operon control protein APT56_03165 SM00732 Likely ribonuclease with RNase H fold. APT56_03180 SM00563 Phosphate acyltransferases APT56_03185 SM00382 ATPases associated with a variety of cellular activities APT56_03200 SM00062 Bacterial periplasmic substrate-binding proteins APT56_03245 SM00382 ATPases associated with a variety of cellular activities APT56_03260 SM00387 Histidine kinase-like ATPases APT56_03260 SM00388 His Kinase A (phosphoacceptor) domain APT56_03265 SM00448 cheY-homologous receiver domain APT56_03265 SM00862 Transcriptional regulatory protein, C terminal APT56_03270 SM00955 APT56_03270 APT56_03300 SM00878 Biotin carboxylase C-terminal domain APT56_03375 SM00344 helix_turn_helix ASNC type APT56_03425 SM00382 ATPases associated with a variety of cellular activities APT56_03470 SM00382 ATPases associated with a variety of cellular activities APT56_03475 SM00382 ATPases associated with a variety of cellular activities APT56_03490 SM00859 Semialdehyde dehydrogenase, NAD binding domain APT56_03515 SM00363 S4 RNA-binding domain APT56_03540 SM00342 helix_turn_helix, arabinose operon control protein APT56_03565 SM00763 PrkA AAA domain APT56_03605 SM00342 helix_turn_helix, arabinose operon control protein APT56_03710 SM00028 Tetratricopeptide repeats APT56_03755 SM00382 ATPases associated with a variety of cellular activities APT56_03820 SM00331 Sigma factor PP2C-like phosphatases APT56_03820 SM01049 APT56_03820 APT56_03830 SM01005 Alanine racemase, C-terminal domain APT56_03880 SM00257 Lysin motif APT56_03885 SM00849 Metallo-beta-lactamase superfamily APT56_03910 SM00479 APT56_03910 APT56_03975 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_03975 SM00895 APT56_03975 APT56_03995 SM00382 ATPases associated with a variety of cellular activities APT56_04000 SM00382 ATPases associated with a variety of cellular activities APT56_04005 SM01130 APT56_04005 APT56_04040 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_04055 SM00838 Elongation factor G C-terminus APT56_04055 SM00889 Elongation factor G, domain IV APT56_04065 SM00344 helix_turn_helix ASNC type APT56_04080 SM00382 ATPases associated with a variety of cellular activities APT56_04135 SM00448 cheY-homologous receiver domain APT56_04135 SM00862 Transcriptional regulatory protein, C terminal APT56_04140 SM00387 Histidine kinase-like ATPases APT56_04140 SM00388 His Kinase A (phosphoacceptor) domain APT56_04235 SM00344 helix_turn_helix ASNC type APT56_04275 SM00151 SWI complex, BAF60b domains APT56_04290 SM00382 ATPases associated with a variety of cellular activities APT56_04350 SM01209 APT56_04350 APT56_04360 SM00842 Cell division protein FtsA APT56_04365 SM00864 Tubulin/FtsZ family, GTPase domain APT56_04365 SM00865 Tubulin/FtsZ family, C-terminal domain APT56_04385 SM00957 SecA DEAD-like domain APT56_04385 SM00958 SecA preprotein cross-linking domain APT56_04395 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_04395 SM00895 APT56_04395 APT56_04420 SM00344 helix_turn_helix ASNC type APT56_04435 SM00116 Domain in cystathionine beta-synthase and other proteins. APT56_04435 SM00924 MgtE intracellular N domain APT56_04480 SM00382 ATPases associated with a variety of cellular activities APT56_04480 SM00930 APT56_04480 APT56_04510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_04510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_04530 SM00342 helix_turn_helix, arabinose operon control protein APT56_04560 SM00267 diguanylate cyclase APT56_04570 SM00822 APT56_04570 APT56_04605 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_04645 SM00650 Ribosomal RNA adenine dimethylases APT56_04690 SM00563 Phosphate acyltransferases APT56_04720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APT56_04720 SM00091 PAS domain APT56_04720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_04735 SM00822 APT56_04735 APT56_04750 SM00869 Autotransporter beta-domain APT56_04855 SM00853 MutL C terminal dimerisation domain APT56_04855 SM01340 APT56_04855 APT56_04870 SM00646 APT56_04870 APT56_04935 SM00903 Flavin reductase like domain APT56_04960 SM00382 ATPases associated with a variety of cellular activities APT56_04980 SM00382 ATPases associated with a variety of cellular activities APT56_05035 SM00382 ATPases associated with a variety of cellular activities APT56_05040 SM00346 helix_turn_helix isocitrate lyase regulation APT56_05065 SM00382 ATPases associated with a variety of cellular activities APT56_05070 SM00382 ATPases associated with a variety of cellular activities APT56_05135 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_05155 SM00382 ATPases associated with a variety of cellular activities APT56_05160 SM00382 ATPases associated with a variety of cellular activities APT56_05170 SM00342 helix_turn_helix, arabinose operon control protein APT56_05185 SM00382 ATPases associated with a variety of cellular activities APT56_05220 SM00346 helix_turn_helix isocitrate lyase regulation APT56_05255 SM00341 Helicase and RNase D C-terminal APT56_05255 SM00487 DEAD-like helicases superfamily APT56_05255 SM00490 helicase superfamily c-terminal domain APT56_05255 SM00956 APT56_05255 APT56_05265 SM00448 cheY-homologous receiver domain APT56_05265 SM00862 Transcriptional regulatory protein, C terminal APT56_05270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_05270 SM00387 Histidine kinase-like ATPases APT56_05275 SM00382 ATPases associated with a variety of cellular activities APT56_05290 SM00278 Helix-hairpin-helix DNA-binding motif class 1 APT56_05300 SM00798 AICARFT/IMPCHase bienzyme APT56_05300 SM00851 MGS-like domain APT56_05325 SM01011 Aminopeptidase P, N-terminal domain APT56_05340 SM00831 Cation transporter/ATPase, N-terminus APT56_05410 SM00342 helix_turn_helix, arabinose operon control protein APT56_05415 SM00487 DEAD-like helicases superfamily APT56_05415 SM00490 helicase superfamily c-terminal domain APT56_05430 SM00852 Probable molybdopterin binding domain APT56_05435 SM00346 helix_turn_helix isocitrate lyase regulation APT56_05515 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_05600 SM00271 DnaJ molecular chaperone homology domain APT56_05635 SM00382 ATPases associated with a variety of cellular activities APT56_05655 SM01329 APT56_05655 APT56_05670 SM01130 APT56_05670 APT56_05685 SM00448 cheY-homologous receiver domain APT56_05685 SM00862 Transcriptional regulatory protein, C terminal APT56_05690 SM00387 Histidine kinase-like ATPases APT56_05690 SM00388 His Kinase A (phosphoacceptor) domain APT56_05730 SM00463 Small MutS-related domain APT56_05740 SM00382 ATPases associated with a variety of cellular activities APT56_05740 SM00843 APT56_05740 APT56_05765 SM00382 ATPases associated with a variety of cellular activities APT56_05770 SM00382 ATPases associated with a variety of cellular activities APT56_05790 SM01119 APT56_05790 APT56_05800 SM00382 ATPases associated with a variety of cellular activities APT56_05835 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APT56_05840 SM01130 APT56_05840 APT56_05900 SM01387 APT56_05900 APT56_05905 SM00316 Ribosomal protein S1-like RNA-binding domain APT56_05905 SM00322 K homology RNA-binding domain APT56_05975 SM00028 Tetratricopeptide repeats APT56_06015 SM00829 Enoylreductase APT56_06100 SM00965 Secretin and TonB N terminus short domain APT56_06115 SM00965 Secretin and TonB N terminus short domain APT56_06140 SM00965 Secretin and TonB N terminus short domain APT56_06150 SM00387 Histidine kinase-like ATPases APT56_06150 SM00388 His Kinase A (phosphoacceptor) domain APT56_06155 SM00448 cheY-homologous receiver domain APT56_06155 SM00862 Transcriptional regulatory protein, C terminal APT56_06160 SM00869 Autotransporter beta-domain APT56_06170 SM00822 APT56_06170 APT56_06190 SM00357 Cold shock protein domain APT56_06230 SM00344 helix_turn_helix ASNC type APT56_06250 SM00382 ATPases associated with a variety of cellular activities APT56_06255 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_06255 SM00895 APT56_06255 APT56_06365 SM00014 Acid phosphatase homologues APT56_06415 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APT56_06420 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APT56_06475 SM00487 DEAD-like helicases superfamily APT56_06475 SM00490 helicase superfamily c-terminal domain APT56_06475 SM00982 APT56_06475 APT56_06475 SM01058 CarD-like/TRCF domain APT56_06505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_06505 SM00387 Histidine kinase-like ATPases APT56_06505 SM00388 His Kinase A (phosphoacceptor) domain APT56_06510 SM00448 cheY-homologous receiver domain APT56_06510 SM00862 Transcriptional regulatory protein, C terminal APT56_06520 SM00986 Uracil DNA glycosylase superfamily APT56_06520 SM00987 UreE urease accessory protein, C-terminal domain APT56_06530 SM00968 SMC proteins Flexible Hinge Domain APT56_06535 SM00771 ZipA, C-terminal domain (FtsZ-binding) APT56_06540 SM00278 Helix-hairpin-helix DNA-binding motif class 1 APT56_06540 SM00292 breast cancer carboxy-terminal domain APT56_06540 SM00532 Ligase N family APT56_06565 SM00382 ATPases associated with a variety of cellular activities APT56_06590 SM00382 ATPases associated with a variety of cellular activities APT56_06595 SM00382 ATPases associated with a variety of cellular activities APT56_06600 SM01022 APT56_06600 APT56_06635 SM00382 ATPases associated with a variety of cellular activities APT56_06640 SM00382 ATPases associated with a variety of cellular activities APT56_06645 SM00478 endonuclease III APT56_06645 SM00525 APT56_06645 APT56_06690 SM00954 Region found in RelA / SpoT proteins APT56_06725 SM00316 Ribosomal protein S1-like RNA-binding domain APT56_06730 SM00363 S4 RNA-binding domain APT56_06750 SM00644 APT56_06750 APT56_06785 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. APT56_06790 SM00822 APT56_06790 APT56_06800 SM00825 Beta-ketoacyl synthase APT56_06825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APT56_06830 SM00838 Elongation factor G C-terminus APT56_06840 SM00358 Double-stranded RNA binding motif APT56_06840 SM00535 Ribonuclease III family APT56_06995 SM00882 Coenzyme A transferase APT56_07020 SM00382 ATPases associated with a variety of cellular activities APT56_07070 SM01192 APT56_07070 APT56_07070 SM01193 APT56_07070 APT56_07125 SM00981 APT56_07125 APT56_07155 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_07155 SM00866 APT56_07155 APT56_07200 SM00919 Malic enzyme, NAD binding domain APT56_07200 SM01274 APT56_07200 APT56_07205 SM00861 Transketolase, pyrimidine binding domain APT56_07235 SM00344 helix_turn_helix ASNC type APT56_07240 SM00861 Transketolase, pyrimidine binding domain APT56_07270 SM00965 Secretin and TonB N terminus short domain APT56_07305 SM00316 Ribosomal protein S1-like RNA-binding domain APT56_07305 SM00732 Likely ribonuclease with RNase H fold. APT56_07310 SM00491 APT56_07310 APT56_07320 SM00363 S4 RNA-binding domain APT56_07335 SM00822 APT56_07335 APT56_07370 SM00912 haemagglutination activity domain APT56_07390 SM00749 bacterial OsmY and nodulation domain APT56_07400 SM01209 APT56_07400 APT56_07410 SM00382 ATPases associated with a variety of cellular activities APT56_07485 SM00028 Tetratricopeptide repeats APT56_07535 SM00434 DNA Topoisomerase IV APT56_07545 SM00830 Chorismate mutase type II APT56_07570 SM00316 Ribosomal protein S1-like RNA-binding domain APT56_07575 SM00411 bacterial (prokaryotic) histone like domain APT56_07615 SM00346 helix_turn_helix isocitrate lyase regulation APT56_07635 SM00893 Electron transfer flavoprotein domain APT56_07640 SM00893 Electron transfer flavoprotein domain APT56_07685 SM00382 ATPases associated with a variety of cellular activities APT56_07705 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_07740 SM00479 APT56_07740 APT56_07845 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APT56_07850 SM00387 Histidine kinase-like ATPases APT56_07850 SM00388 His Kinase A (phosphoacceptor) domain APT56_07855 SM00448 cheY-homologous receiver domain APT56_07855 SM00862 Transcriptional regulatory protein, C terminal APT56_07870 SM00833 Cobalamin synthesis protein cobW C-terminal domain APT56_07875 SM00833 Cobalamin synthesis protein cobW C-terminal domain APT56_07895 SM00363 S4 RNA-binding domain APT56_07905 SM00316 Ribosomal protein S1-like RNA-binding domain APT56_07960 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs APT56_07960 SM00474 3'-5' exonuclease APT56_07960 SM00475 5'-3' exonuclease APT56_07960 SM00482 DNA polymerase A domain APT56_07995 SM00450 Rhodanese Homology Domain APT56_08010 SM00382 ATPases associated with a variety of cellular activities APT56_08050 SM00346 helix_turn_helix isocitrate lyase regulation APT56_08065 SM00861 Transketolase, pyrimidine binding domain APT56_08105 SM00382 ATPases associated with a variety of cellular activities APT56_08125 SM00344 helix_turn_helix ASNC type APT56_08150 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_08205 SM00267 diguanylate cyclase APT56_08225 SM00387 Histidine kinase-like ATPases APT56_08225 SM00388 His Kinase A (phosphoacceptor) domain APT56_08230 SM00448 cheY-homologous receiver domain APT56_08230 SM00862 Transcriptional regulatory protein, C terminal APT56_08235 SM00382 ATPases associated with a variety of cellular activities APT56_08270 SM00881 CoA binding domain APT56_08310 SM00346 helix_turn_helix isocitrate lyase regulation APT56_08330 SM00822 APT56_08330 APT56_08335 SM00382 ATPases associated with a variety of cellular activities APT56_08340 SM00382 ATPases associated with a variety of cellular activities APT56_08350 SM00886 Stress responsive A/B Barrel Domain APT56_08365 SM00670 Large family of predicted nucleotide-binding domains APT56_08415 SM00528 Domain in histone-like proteins of HNS family APT56_08460 SM01002 Alanine dehydrogenase/PNT, C-terminal domain APT56_08460 SM01003 Alanine dehydrogenase/PNT, N-terminal domain APT56_08650 SM00267 diguanylate cyclase APT56_08705 SM00155 Phospholipase D. Active site motifs. APT56_08740 SM01144 APT56_08740 APT56_08750 SM00316 Ribosomal protein S1-like RNA-binding domain APT56_08750 SM00357 Cold shock protein domain APT56_08750 SM00955 APT56_08750 APT56_08755 SM00967 RNA 2'-O ribose methyltransferase substrate binding APT56_08765 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. APT56_08770 SM00411 bacterial (prokaryotic) histone like domain APT56_08795 SM00448 cheY-homologous receiver domain APT56_08795 SM00862 Transcriptional regulatory protein, C terminal APT56_08800 SM00387 Histidine kinase-like ATPases APT56_08800 SM00388 His Kinase A (phosphoacceptor) domain APT56_08840 SM00448 cheY-homologous receiver domain APT56_08840 SM00862 Transcriptional regulatory protein, C terminal APT56_08845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_08845 SM00387 Histidine kinase-like ATPases APT56_08845 SM00388 His Kinase A (phosphoacceptor) domain APT56_08895 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_08895 SM00895 APT56_08895 APT56_08930 SM00382 ATPases associated with a variety of cellular activities APT56_08935 SM00382 ATPases associated with a variety of cellular activities APT56_08975 SM00382 ATPases associated with a variety of cellular activities APT56_09045 SM00382 ATPases associated with a variety of cellular activities APT56_09045 SM00487 DEAD-like helicases superfamily APT56_09045 SM00490 helicase superfamily c-terminal domain APT56_09045 SM00847 Helicase associated domain (HA2) Add an annotation APT56_09055 SM00382 ATPases associated with a variety of cellular activities APT56_09065 SM00481 DNA polymerase alpha chain like domain APT56_09115 SM00382 ATPases associated with a variety of cellular activities APT56_09130 SM00267 diguanylate cyclase APT56_09135 SM00267 diguanylate cyclase APT56_09145 SM00316 Ribosomal protein S1-like RNA-binding domain APT56_09175 SM00382 ATPases associated with a variety of cellular activities APT56_09175 SM00448 cheY-homologous receiver domain APT56_09180 SM00387 Histidine kinase-like ATPases APT56_09180 SM00388 His Kinase A (phosphoacceptor) domain APT56_09215 SM01209 APT56_09215 APT56_09215 SM01210 APT56_09215 APT56_09230 SM01329 APT56_09230 APT56_09255 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_09270 SM00829 Enoylreductase APT56_09310 SM00342 helix_turn_helix, arabinose operon control protein APT56_09335 SM00357 Cold shock protein domain APT56_09335 SM00382 ATPases associated with a variety of cellular activities APT56_09335 SM00959 Rho termination factor, N-terminal domain APT56_09345 SM00387 Histidine kinase-like ATPases APT56_09345 SM00433 TopoisomeraseII APT56_09355 SM00434 DNA Topoisomerase IV APT56_09380 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_09440 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain APT56_09470 SM00530 Helix-turn-helix XRE-family like proteins APT56_09475 SM00062 Bacterial periplasmic substrate-binding proteins APT56_09475 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. APT56_09485 SM00382 ATPases associated with a variety of cellular activities APT56_09500 SM00562 APT56_09500 APT56_09530 SM00564 beta-propeller repeat APT56_09535 SM00382 ATPases associated with a variety of cellular activities APT56_09555 SM00244 prohibitin homologues APT56_09560 SM00244 prohibitin homologues APT56_09570 SM00788 Adenylosuccinate synthetase APT56_09585 SM00400 zinc finger APT56_09585 SM00493 APT56_09585 APT56_09585 SM00766 DNA primase DnaG DnaB-binding APT56_09645 SM00858 APT56_09645 APT56_09655 SM00240 Forkhead associated domain APT56_09685 SM00116 Domain in cystathionine beta-synthase and other proteins. APT56_09705 SM00448 cheY-homologous receiver domain APT56_09705 SM00862 Transcriptional regulatory protein, C terminal APT56_09710 SM00387 Histidine kinase-like ATPases APT56_09710 SM00388 His Kinase A (phosphoacceptor) domain APT56_09715 SM00052 Putative diguanylate phosphodiesterase APT56_09715 SM00267 diguanylate cyclase APT56_09720 SM00052 Putative diguanylate phosphodiesterase APT56_09720 SM00267 diguanylate cyclase APT56_09735 SM00052 Putative diguanylate phosphodiesterase APT56_09735 SM00267 diguanylate cyclase APT56_09745 SM00327 von Willebrand factor (vWF) type A domain APT56_09755 SM00421 helix_turn_helix, Lux Regulon APT56_09765 SM00382 ATPases associated with a variety of cellular activities APT56_09790 SM01329 APT56_09790 APT56_09795 SM00859 Semialdehyde dehydrogenase, NAD binding domain APT56_09800 SM00257 Lysin motif APT56_09885 SM00354 helix_turn _helix lactose operon repressor APT56_09905 SM00382 ATPases associated with a variety of cellular activities APT56_09940 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_09940 SM00895 APT56_09940 APT56_09955 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_09960 SM00421 helix_turn_helix, Lux Regulon APT56_09960 SM00448 cheY-homologous receiver domain APT56_09970 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain APT56_10005 SM00938 Nitrogen regulatory protein P-II APT56_10020 SM00382 ATPases associated with a variety of cellular activities APT56_10040 SM00873 B3/4 domain APT56_10040 SM00874 tRNA synthetase B5 domain APT56_10040 SM00896 Ferredoxin-fold anticodon binding domain APT56_10045 SM00411 bacterial (prokaryotic) histone like domain APT56_10050 SM00422 helix_turn_helix, mercury resistance APT56_10285 SM01040 BRO family, N-terminal domain APT56_10335 SM00248 ankyrin repeats APT56_10375 SM00344 helix_turn_helix ASNC type APT56_10425 SM00062 Bacterial periplasmic substrate-binding proteins APT56_10435 SM00382 ATPases associated with a variety of cellular activities APT56_10465 SM00382 ATPases associated with a variety of cellular activities APT56_10520 SM00028 Tetratricopeptide repeats APT56_10525 SM00267 diguanylate cyclase APT56_10560 SM00825 Beta-ketoacyl synthase APT56_10565 SM00822 APT56_10565 APT56_10575 SM00825 Beta-ketoacyl synthase APT56_10635 SM00563 Phosphate acyltransferases APT56_10675 SM00342 helix_turn_helix, arabinose operon control protein APT56_10730 SM00382 ATPases associated with a variety of cellular activities APT56_10760 SM00100 Cyclic nucleotide-monophosphate binding domain APT56_10770 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_10800 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_10840 SM00822 APT56_10840 APT56_10875 SM00903 Flavin reductase like domain APT56_10900 SM00342 helix_turn_helix, arabinose operon control protein APT56_10935 SM00829 Enoylreductase APT56_10960 SM00382 ATPases associated with a variety of cellular activities APT56_10990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APT56_10990 SM00091 PAS domain APT56_10990 SM00267 diguanylate cyclase APT56_11000 SM00986 Uracil DNA glycosylase superfamily APT56_11000 SM00987 UreE urease accessory protein, C-terminal domain APT56_11045 SM00382 ATPases associated with a variety of cellular activities APT56_11075 SM00926 Molybdopterin oxidoreductase Fe4S4 domain APT56_11095 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_11095 SM00895 APT56_11095 APT56_11110 SM00052 Putative diguanylate phosphodiesterase APT56_11110 SM00091 PAS domain APT56_11110 SM00267 diguanylate cyclase APT56_11160 SM00822 APT56_11160 APT56_11180 SM00342 helix_turn_helix, arabinose operon control protein APT56_11210 SM01007 Class II Aldolase and Adducin N-terminal domain APT56_11230 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_11230 SM00866 APT56_11230 APT56_11260 SM00342 helix_turn_helix, arabinose operon control protein APT56_11270 SM00344 helix_turn_helix ASNC type APT56_11280 SM00382 ATPases associated with a variety of cellular activities APT56_11295 SM00346 helix_turn_helix isocitrate lyase regulation APT56_11310 SM00822 APT56_11310 APT56_11345 SM00382 ATPases associated with a variety of cellular activities APT56_11400 SM00354 helix_turn _helix lactose operon repressor APT56_11495 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_11495 SM00895 APT56_11495 APT56_11535 SM00422 helix_turn_helix, mercury resistance APT56_11560 SM00965 Secretin and TonB N terminus short domain APT56_11570 SM00861 Transketolase, pyrimidine binding domain APT56_11605 SM00938 Nitrogen regulatory protein P-II APT56_11635 SM00382 ATPases associated with a variety of cellular activities APT56_11740 SM00382 ATPases associated with a variety of cellular activities APT56_11745 SM01322 APT56_11745 APT56_11775 SM00363 S4 RNA-binding domain APT56_11825 SM00421 helix_turn_helix, Lux Regulon APT56_11825 SM00448 cheY-homologous receiver domain APT56_11830 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APT56_11830 SM00091 PAS domain APT56_11830 SM00387 Histidine kinase-like ATPases APT56_11830 SM00388 His Kinase A (phosphoacceptor) domain APT56_11905 SM00448 cheY-homologous receiver domain APT56_11910 SM00073 Histidine Phosphotransfer domain APT56_11910 SM00260 Two component signalling adaptor domain APT56_11910 SM00387 Histidine kinase-like ATPases APT56_11910 SM01231 APT56_11910 APT56_11915 SM00260 Two component signalling adaptor domain APT56_11920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_11920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_11925 SM00138 Methyltransferase, chemotaxis proteins APT56_11930 SM00448 cheY-homologous receiver domain APT56_11935 SM00448 cheY-homologous receiver domain APT56_11945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_11960 SM00382 ATPases associated with a variety of cellular activities APT56_11960 SM00962 SRP54-type protein, GTPase domain APT56_11975 SM00858 APT56_11975 APT56_12020 SM00047 Lysozyme subfamily 2 APT56_12035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_12035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_12040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_12040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_12050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_12050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_12055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APT56_12055 SM00091 PAS domain APT56_12055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_12055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_12105 SM00382 ATPases associated with a variety of cellular activities APT56_12230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APT56_12275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APT56_12285 SM00935 Outer membrane protein (OmpH-like) APT56_12345 SM00965 Secretin and TonB N terminus short domain APT56_12360 SM00342 helix_turn_helix, arabinose operon control protein APT56_12375 SM00244 prohibitin homologues APT56_12380 SM00267 diguanylate cyclase APT56_12450 SM00248 ankyrin repeats APT56_12455 SM00346 helix_turn_helix isocitrate lyase regulation APT56_12460 SM00062 Bacterial periplasmic substrate-binding proteins APT56_12460 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. APT56_12470 SM00382 ATPases associated with a variety of cellular activities APT56_12485 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT56_12520 SM00344 helix_turn_helix ASNC type APT56_12570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APT56_12570 SM00091 PAS domain APT56_12570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_12570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_12600 SM00487 DEAD-like helicases superfamily APT56_12600 SM00490 helicase superfamily c-terminal domain APT56_12605 SM00346 helix_turn_helix isocitrate lyase regulation APT56_12635 SM00382 ATPases associated with a variety of cellular activities APT56_12645 SM00833 Cobalamin synthesis protein cobW C-terminal domain APT56_12660 SM00869 Autotransporter beta-domain APT56_12665 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_12680 SM00382 ATPases associated with a variety of cellular activities APT56_12685 SM00062 Bacterial periplasmic substrate-binding proteins APT56_12705 SM00421 helix_turn_helix, Lux Regulon APT56_12705 SM00448 cheY-homologous receiver domain APT56_12710 SM00387 Histidine kinase-like ATPases APT56_12710 SM01049 APT56_12710 APT56_12730 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_12760 SM00869 Autotransporter beta-domain APT56_12790 SM00448 cheY-homologous receiver domain APT56_12790 SM00862 Transcriptional regulatory protein, C terminal APT56_12795 SM00387 Histidine kinase-like ATPases APT56_12795 SM00388 His Kinase A (phosphoacceptor) domain APT56_12820 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_12900 SM00926 Molybdopterin oxidoreductase Fe4S4 domain APT56_12925 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_12930 SM00947 Carbonic anhydrase APT56_12940 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APT56_12940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_12940 SM00387 Histidine kinase-like ATPases APT56_12945 SM00421 helix_turn_helix, Lux Regulon APT56_12945 SM00448 cheY-homologous receiver domain APT56_12970 SM00062 Bacterial periplasmic substrate-binding proteins APT56_12990 SM00342 helix_turn_helix, arabinose operon control protein APT56_13005 SM00382 ATPases associated with a variety of cellular activities APT56_13030 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_13030 SM00895 APT56_13030 APT56_13055 SM01130 APT56_13055 APT56_13060 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_13060 SM00895 APT56_13060 APT56_13145 SM00062 Bacterial periplasmic substrate-binding proteins APT56_13150 SM00062 Bacterial periplasmic substrate-binding proteins APT56_13175 SM00382 ATPases associated with a variety of cellular activities APT56_13200 SM00450 Rhodanese Homology Domain APT56_13205 SM00450 Rhodanese Homology Domain APT56_13260 SM00421 helix_turn_helix, Lux Regulon APT56_13260 SM00448 cheY-homologous receiver domain APT56_13265 SM00387 Histidine kinase-like ATPases APT56_13265 SM00388 His Kinase A (phosphoacceptor) domain APT56_13270 SM00116 Domain in cystathionine beta-synthase and other proteins. APT56_13275 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_13285 SM00859 Semialdehyde dehydrogenase, NAD binding domain APT56_13295 SM00849 Metallo-beta-lactamase superfamily APT56_13335 SM00062 Bacterial periplasmic substrate-binding proteins APT56_13335 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. APT56_13345 SM00382 ATPases associated with a variety of cellular activities APT56_13350 SM00382 ATPases associated with a variety of cellular activities APT56_13380 SM00342 helix_turn_helix, arabinose operon control protein APT56_13400 SM01006 Siderophore biosynthesis protein domain APT56_13410 SM00382 ATPases associated with a variety of cellular activities APT56_13430 SM00862 Transcriptional regulatory protein, C terminal APT56_13440 SM00382 ATPases associated with a variety of cellular activities APT56_13460 SM00448 cheY-homologous receiver domain APT56_13460 SM00862 Transcriptional regulatory protein, C terminal APT56_13465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_13465 SM00387 Histidine kinase-like ATPases APT56_13465 SM00388 His Kinase A (phosphoacceptor) domain APT56_13475 SM00382 ATPases associated with a variety of cellular activities APT56_13495 SM00062 Bacterial periplasmic substrate-binding proteins APT56_13500 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_13500 SM00895 APT56_13500 APT56_13505 SM01130 APT56_13505 APT56_13515 SM01130 APT56_13515 APT56_13520 SM00858 APT56_13520 APT56_13530 SM00945 ProQ/FINO family APT56_13565 SM00382 ATPases associated with a variety of cellular activities APT56_13645 SM00965 Secretin and TonB N terminus short domain APT56_13655 SM00642 Alpha-amylase domain APT56_13665 SM00642 Alpha-amylase domain APT56_13670 SM00642 Alpha-amylase domain APT56_13675 SM00642 Alpha-amylase domain APT56_13680 SM00642 Alpha-amylase domain APT56_13685 SM00642 Alpha-amylase domain APT56_13700 SM00155 Phospholipase D. Active site motifs. APT56_13765 SM01060 APT56_13765 APT56_13795 SM00849 Metallo-beta-lactamase superfamily APT56_13795 SM01027 Beta-Casp domain APT56_13800 SM00116 Domain in cystathionine beta-synthase and other proteins. APT56_13810 SM00091 PAS domain APT56_13810 SM00387 Histidine kinase-like ATPases APT56_13815 SM00421 helix_turn_helix, Lux Regulon APT56_13815 SM00448 cheY-homologous receiver domain APT56_13820 SM00419 helix_turn_helix, cAMP Regulatory protein APT56_13855 SM00880 APT56_13855 APT56_13860 SM00749 bacterial OsmY and nodulation domain APT56_14010 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_14010 SM00895 APT56_14010 APT56_14050 SM00382 ATPases associated with a variety of cellular activities APT56_14055 SM00382 ATPases associated with a variety of cellular activities APT56_14065 SM00530 Helix-turn-helix XRE-family like proteins APT56_14090 SM00363 S4 RNA-binding domain APT56_14115 SM00671 Sel1-like repeats. APT56_14120 SM00869 Autotransporter beta-domain APT56_14125 SM00869 Autotransporter beta-domain APT56_14155 SM00267 diguanylate cyclase APT56_14165 SM00422 helix_turn_helix, mercury resistance APT56_14170 SM00267 diguanylate cyclase APT56_14225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_14225 SM00387 Histidine kinase-like ATPases APT56_14225 SM00388 His Kinase A (phosphoacceptor) domain APT56_14230 SM00869 Autotransporter beta-domain APT56_14235 SM01091 Transporter associated domain APT56_14285 SM00052 Putative diguanylate phosphodiesterase APT56_14360 SM00382 ATPases associated with a variety of cellular activities APT56_14360 SM00448 cheY-homologous receiver domain APT56_14365 SM00382 ATPases associated with a variety of cellular activities APT56_14380 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APT56_14380 SM00091 PAS domain APT56_14380 SM00387 Histidine kinase-like ATPases APT56_14380 SM00388 His Kinase A (phosphoacceptor) domain APT56_14380 SM00448 cheY-homologous receiver domain APT56_14410 SM00052 Putative diguanylate phosphodiesterase APT56_14410 SM00448 cheY-homologous receiver domain APT56_14435 SM00448 cheY-homologous receiver domain APT56_14435 SM00862 Transcriptional regulatory protein, C terminal APT56_14445 SM00382 ATPases associated with a variety of cellular activities APT56_14450 SM00342 helix_turn_helix, arabinose operon control protein APT56_14490 SM00344 helix_turn_helix ASNC type APT56_14500 SM00091 PAS domain APT56_14500 SM00267 diguanylate cyclase APT56_14525 SM00829 Enoylreductase APT56_14580 SM00382 ATPases associated with a variety of cellular activities APT56_14585 SM00382 ATPases associated with a variety of cellular activities APT56_14630 SM00382 ATPases associated with a variety of cellular activities APT56_14645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_14645 SM00387 Histidine kinase-like ATPases APT56_14645 SM00388 His Kinase A (phosphoacceptor) domain APT56_14650 SM00448 cheY-homologous receiver domain APT56_14650 SM00862 Transcriptional regulatory protein, C terminal APT56_14665 SM00656 APT56_14665 APT56_14705 SM00984 UDP binding domain APT56_14720 SM00487 DEAD-like helicases superfamily APT56_14720 SM00490 helicase superfamily c-terminal domain APT56_14775 SM00382 ATPases associated with a variety of cellular activities APT56_14810 SM00382 ATPases associated with a variety of cellular activities APT56_14810 SM00448 cheY-homologous receiver domain APT56_14815 SM00091 PAS domain APT56_14815 SM00387 Histidine kinase-like ATPases APT56_14815 SM00388 His Kinase A (phosphoacceptor) domain APT56_14820 SM01230 APT56_14820 APT56_14825 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_14835 SM00052 Putative diguanylate phosphodiesterase APT56_14835 SM00267 diguanylate cyclase APT56_14905 SM00822 APT56_14905 APT56_14920 SM00072 Guanylate kinase homologues. APT56_14925 SM01409 APT56_14925 APT56_14930 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APT56_14930 SM00954 Region found in RelA / SpoT proteins APT56_14935 SM00382 ATPases associated with a variety of cellular activities APT56_14945 SM00062 Bacterial periplasmic substrate-binding proteins APT56_14945 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. APT56_14990 SM00382 ATPases associated with a variety of cellular activities APT56_14995 SM00382 ATPases associated with a variety of cellular activities APT56_15075 SM00382 ATPases associated with a variety of cellular activities APT56_15090 SM00382 ATPases associated with a variety of cellular activities APT56_15140 SM00422 helix_turn_helix, mercury resistance APT56_15165 SM00257 Lysin motif APT56_15180 SM01207 APT56_15180 APT56_15215 SM00062 Bacterial periplasmic substrate-binding proteins APT56_15225 SM00062 Bacterial periplasmic substrate-binding proteins APT56_15230 SM00382 ATPases associated with a variety of cellular activities APT56_15240 SM00382 ATPases associated with a variety of cellular activities APT56_15325 SM00344 helix_turn_helix ASNC type APT56_15405 SM00862 Transcriptional regulatory protein, C terminal APT56_15435 SM00382 ATPases associated with a variety of cellular activities APT56_15440 SM00382 ATPases associated with a variety of cellular activities APT56_15445 SM00420 helix_turn_helix, Deoxyribose operon repressor APT56_15445 SM01134 APT56_15445 APT56_15455 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APT56_15480 SM00382 ATPases associated with a variety of cellular activities APT56_15495 SM00862 Transcriptional regulatory protein, C terminal APT56_15535 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APT56_15555 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_15600 SM00346 helix_turn_helix isocitrate lyase regulation APT56_15630 SM00481 DNA polymerase alpha chain like domain APT56_15640 SM00422 helix_turn_helix, mercury resistance APT56_15660 SM01400 APT56_15660 APT56_15680 SM00382 ATPases associated with a variety of cellular activities APT56_15695 SM00062 Bacterial periplasmic substrate-binding proteins APT56_15735 SM00825 Beta-ketoacyl synthase APT56_15770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_15770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_15790 SM00464 Found in ATP-dependent protease La (LON) APT56_15810 SM01012 APT56_15810 APT56_15820 SM00382 ATPases associated with a variety of cellular activities APT56_15825 SM00382 ATPases associated with a variety of cellular activities APT56_15860 SM00346 helix_turn_helix isocitrate lyase regulation APT56_15920 SM00342 helix_turn_helix, arabinose operon control protein APT56_15965 SM00342 helix_turn_helix, arabinose operon control protein APT56_16020 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_16050 SM00860 SMI1 / KNR4 family APT56_16110 SM00382 ATPases associated with a variety of cellular activities APT56_16110 SM01086 C-terminal, D2-small domain, of ClpB protein APT56_16285 SM01192 APT56_16285 APT56_16285 SM01193 APT56_16285 APT56_16350 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_16350 SM00895 APT56_16350 APT56_16370 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_16380 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT56_16410 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT56_16430 SM00344 helix_turn_helix ASNC type APT56_16440 SM00382 ATPases associated with a variety of cellular activities APT56_16455 SM00267 diguanylate cyclase APT56_16455 SM00448 cheY-homologous receiver domain APT56_16460 SM00448 cheY-homologous receiver domain APT56_16465 SM00073 Histidine Phosphotransfer domain APT56_16465 SM00260 Two component signalling adaptor domain APT56_16465 SM00387 Histidine kinase-like ATPases APT56_16465 SM00448 cheY-homologous receiver domain APT56_16470 SM00260 Two component signalling adaptor domain APT56_16475 SM00028 Tetratricopeptide repeats APT56_16475 SM00138 Methyltransferase, chemotaxis proteins APT56_16480 SM00260 Two component signalling adaptor domain APT56_16485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_16485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_16515 SM00488 APT56_16515 APT56_16515 SM00491 APT56_16515 APT56_16520 SM00990 APT56_16520 APT56_16575 SM00342 helix_turn_helix, arabinose operon control protein APT56_16595 SM00422 helix_turn_helix, mercury resistance APT56_16645 SM00822 APT56_16645 APT56_16650 SM00342 helix_turn_helix, arabinose operon control protein APT56_16680 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APT56_16685 SM00829 Enoylreductase APT56_16720 SM00116 Domain in cystathionine beta-synthase and other proteins. APT56_16720 SM01240 APT56_16720 APT56_16810 SM00422 helix_turn_helix, mercury resistance APT56_16835 SM00382 ATPases associated with a variety of cellular activities APT56_16840 SM00382 ATPases associated with a variety of cellular activities APT56_16880 SM00849 Metallo-beta-lactamase superfamily APT56_16885 SM00062 Bacterial periplasmic substrate-binding proteins APT56_16925 SM00342 helix_turn_helix, arabinose operon control protein APT56_16930 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_17060 SM00903 Flavin reductase like domain APT56_17090 SM00965 Secretin and TonB N terminus short domain APT56_17100 SM00267 diguanylate cyclase APT56_17115 SM00477 DNA/RNA non-specific endonuclease APT56_17115 SM00892 DNA/RNA non-specific endonuclease APT56_17185 SM00387 Histidine kinase-like ATPases APT56_17185 SM00388 His Kinase A (phosphoacceptor) domain APT56_17185 SM00448 cheY-homologous receiver domain APT56_17190 SM00342 helix_turn_helix, arabinose operon control protein APT56_17190 SM00448 cheY-homologous receiver domain APT56_17200 SM00912 haemagglutination activity domain APT56_17260 SM00387 Histidine kinase-like ATPases APT56_17260 SM00388 His Kinase A (phosphoacceptor) domain APT56_17265 SM00448 cheY-homologous receiver domain APT56_17265 SM00862 Transcriptional regulatory protein, C terminal APT56_17280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_17280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_17285 SM01211 APT56_17285 APT56_17310 SM00481 DNA polymerase alpha chain like domain APT56_17365 SM00849 Metallo-beta-lactamase superfamily APT56_17430 SM00883 Chaperonin 10 Kd subunit APT56_17450 SM00869 Autotransporter beta-domain APT56_17500 SM00382 ATPases associated with a variety of cellular activities APT56_17525 SM00448 cheY-homologous receiver domain APT56_17525 SM00862 Transcriptional regulatory protein, C terminal APT56_17530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_17530 SM00387 Histidine kinase-like ATPases APT56_17530 SM00388 His Kinase A (phosphoacceptor) domain APT56_17540 SM00382 ATPases associated with a variety of cellular activities APT56_17560 SM00869 Autotransporter beta-domain APT56_17570 SM00937 APT56_17570 APT56_17590 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_17620 SM00382 ATPases associated with a variety of cellular activities APT56_17640 SM00382 ATPases associated with a variety of cellular activities APT56_17675 SM00271 DnaJ molecular chaperone homology domain APT56_17700 SM00226 Low molecular weight phosphatase family APT56_17705 SM00487 DEAD-like helicases superfamily APT56_17705 SM00490 helicase superfamily c-terminal domain APT56_17720 SM00382 ATPases associated with a variety of cellular activities APT56_17720 SM00464 Found in ATP-dependent protease La (LON) APT56_17725 SM00382 ATPases associated with a variety of cellular activities APT56_17725 SM00994 ClpX C4-type zinc finger APT56_17725 SM01086 C-terminal, D2-small domain, of ClpB protein APT56_17750 SM00357 Cold shock protein domain APT56_17760 SM00357 Cold shock protein domain APT56_17790 SM01119 APT56_17790 APT56_17925 SM00382 ATPases associated with a variety of cellular activities APT56_17940 SM00965 Secretin and TonB N terminus short domain APT56_17945 SM00965 Secretin and TonB N terminus short domain APT56_17955 SM00830 Chorismate mutase type II APT56_17985 SM00904 Riboflavin kinase APT56_18025 SM00346 helix_turn_helix isocitrate lyase regulation APT56_18055 SM00382 ATPases associated with a variety of cellular activities APT56_18070 SM00062 Bacterial periplasmic substrate-binding proteins APT56_18140 SM00382 ATPases associated with a variety of cellular activities APT56_18145 SM00382 ATPases associated with a variety of cellular activities APT56_18185 SM00382 ATPases associated with a variety of cellular activities APT56_18185 SM01086 C-terminal, D2-small domain, of ClpB protein APT56_18195 SM01359 APT56_18195 APT56_18195 SM01360 APT56_18195 APT56_18205 SM00357 Cold shock protein domain APT56_18225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_18225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_18235 SM00248 ankyrin repeats APT56_18325 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_18325 SM00895 APT56_18325 APT56_18330 SM01130 APT56_18330 APT56_18360 SM00382 ATPases associated with a variety of cellular activities APT56_18370 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_18405 SM00822 APT56_18405 APT56_18410 SM01005 Alanine racemase, C-terminal domain APT56_18490 SM00382 ATPases associated with a variety of cellular activities APT56_18490 SM01086 C-terminal, D2-small domain, of ClpB protein APT56_18500 SM00100 Cyclic nucleotide-monophosphate binding domain APT56_18500 SM00419 helix_turn_helix, cAMP Regulatory protein APT56_18555 SM00342 helix_turn_helix, arabinose operon control protein APT56_18560 SM00342 helix_turn_helix, arabinose operon control protein APT56_18605 SM00346 helix_turn_helix isocitrate lyase regulation APT56_18660 SM00062 Bacterial periplasmic substrate-binding proteins APT56_18665 SM00834 Putative regulatory protein APT56_18690 SM00344 helix_turn_helix ASNC type APT56_18700 SM00382 ATPases associated with a variety of cellular activities APT56_18820 SM00382 ATPases associated with a variety of cellular activities APT56_18840 SM00052 Putative diguanylate phosphodiesterase APT56_18840 SM00267 diguanylate cyclase APT56_18845 SM00363 S4 RNA-binding domain APT56_18875 SM00382 ATPases associated with a variety of cellular activities APT56_18875 SM00930 APT56_18875 APT56_18910 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_18945 SM00342 helix_turn_helix, arabinose operon control protein APT56_18980 SM00342 helix_turn_helix, arabinose operon control protein APT56_19015 SM00822 APT56_19015 APT56_19015 SM00823 Phosphopantetheine attachment site APT56_19015 SM00825 Beta-ketoacyl synthase APT56_19015 SM00826 APT56_19015 APT56_19015 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. APT56_19015 SM00829 Enoylreductase APT56_19015 SM01294 APT56_19015 APT56_19045 SM00091 PAS domain APT56_19045 SM00421 helix_turn_helix, Lux Regulon APT56_19075 SM00382 ATPases associated with a variety of cellular activities APT56_19080 SM00091 PAS domain APT56_19080 SM00387 Histidine kinase-like ATPases APT56_19085 SM00421 helix_turn_helix, Lux Regulon APT56_19085 SM00448 cheY-homologous receiver domain APT56_19100 SM00382 ATPases associated with a variety of cellular activities APT56_19105 SM01116 APT56_19105 APT56_19155 SM00560 LamG-like jellyroll fold domain APT56_19165 SM00912 haemagglutination activity domain APT56_19180 SM00965 Secretin and TonB N terminus short domain APT56_19185 SM00912 haemagglutination activity domain APT56_19200 SM00965 Secretin and TonB N terminus short domain APT56_19215 SM00530 Helix-turn-helix XRE-family like proteins APT56_19220 SM01007 Class II Aldolase and Adducin N-terminal domain APT56_19235 SM00382 ATPases associated with a variety of cellular activities APT56_19280 SM00342 helix_turn_helix, arabinose operon control protein APT56_19285 SM00450 Rhodanese Homology Domain APT56_19300 SM00267 diguanylate cyclase APT56_19305 SM00869 Autotransporter beta-domain APT56_19330 SM00354 helix_turn _helix lactose operon repressor APT56_19365 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT56_19375 SM00829 Enoylreductase APT56_19380 SM00342 helix_turn_helix, arabinose operon control protein APT56_19405 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen APT56_19415 SM00382 ATPases associated with a variety of cellular activities APT56_19415 SM00448 cheY-homologous receiver domain APT56_19420 SM00387 Histidine kinase-like ATPases APT56_19420 SM00388 His Kinase A (phosphoacceptor) domain APT56_19460 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_19480 SM00965 Secretin and TonB N terminus short domain APT56_19505 SM00382 ATPases associated with a variety of cellular activities APT56_19520 SM00100 Cyclic nucleotide-monophosphate binding domain APT56_19520 SM00419 helix_turn_helix, cAMP Regulatory protein APT56_19530 SM00421 helix_turn_helix, Lux Regulon APT56_19555 SM00346 helix_turn_helix isocitrate lyase regulation APT56_19570 SM00858 APT56_19570 APT56_19590 SM00382 ATPases associated with a variety of cellular activities APT56_19595 SM00062 Bacterial periplasmic substrate-binding proteins APT56_19600 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APT56_19615 SM00861 Transketolase, pyrimidine binding domain APT56_19625 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_19625 SM00895 APT56_19625 APT56_19660 SM00382 ATPases associated with a variety of cellular activities APT56_19665 SM00382 ATPases associated with a variety of cellular activities APT56_19670 SM00829 Enoylreductase APT56_19720 SM00841 Elongation factor P, C-terminal APT56_19720 SM01185 APT56_19720 APT56_19735 SM00382 ATPases associated with a variety of cellular activities APT56_19750 SM00028 Tetratricopeptide repeats APT56_19780 SM00858 APT56_19780 APT56_19820 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_19825 SM00382 ATPases associated with a variety of cellular activities APT56_19845 SM00318 Staphylococcal nuclease homologues APT56_19865 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_19985 SM00421 helix_turn_helix, Lux Regulon APT56_19990 SM00421 helix_turn_helix, Lux Regulon APT56_20060 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_20065 SM00382 ATPases associated with a variety of cellular activities APT56_20085 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_20085 SM00866 APT56_20085 APT56_20090 SM00882 Coenzyme A transferase APT56_20095 SM00882 Coenzyme A transferase APT56_20110 SM00346 helix_turn_helix isocitrate lyase regulation APT56_20135 SM00530 Helix-turn-helix XRE-family like proteins APT56_20195 SM00450 Rhodanese Homology Domain APT56_20200 SM00869 Autotransporter beta-domain APT56_20205 SM00387 Histidine kinase-like ATPases APT56_20205 SM00388 His Kinase A (phosphoacceptor) domain APT56_20205 SM00448 cheY-homologous receiver domain APT56_20210 SM00052 Putative diguanylate phosphodiesterase APT56_20210 SM00448 cheY-homologous receiver domain APT56_20215 SM00387 Histidine kinase-like ATPases APT56_20215 SM00388 His Kinase A (phosphoacceptor) domain APT56_20215 SM00448 cheY-homologous receiver domain APT56_20250 SM00478 endonuclease III APT56_20255 SM00840 APT56_20255 APT56_20260 SM00028 Tetratricopeptide repeats APT56_20280 SM01091 Transporter associated domain APT56_20300 SM00346 helix_turn_helix isocitrate lyase regulation APT56_20355 SM00382 ATPases associated with a variety of cellular activities APT56_20370 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_20370 SM00895 APT56_20370 APT56_20410 SM00829 Enoylreductase APT56_20460 SM00533 DNA-binding domain of DNA mismatch repair MUTS family APT56_20460 SM00534 ATPase domain of DNA mismatch repair MUTS family APT56_20465 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. APT56_20480 SM01130 APT56_20480 APT56_20520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APT56_20565 SM00470 ParB-like nuclease domain APT56_20570 SM00387 Histidine kinase-like ATPases APT56_20570 SM00388 His Kinase A (phosphoacceptor) domain APT56_20575 SM00448 cheY-homologous receiver domain APT56_20575 SM00862 Transcriptional regulatory protein, C terminal APT56_20610 SM00052 Putative diguanylate phosphodiesterase APT56_20610 SM00448 cheY-homologous receiver domain APT56_20615 SM00387 Histidine kinase-like ATPases APT56_20615 SM00388 His Kinase A (phosphoacceptor) domain APT56_20615 SM00448 cheY-homologous receiver domain APT56_20620 SM00421 helix_turn_helix, Lux Regulon APT56_20620 SM00448 cheY-homologous receiver domain APT56_20660 SM00869 Autotransporter beta-domain APT56_20665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_20665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_20670 SM00869 Autotransporter beta-domain APT56_20690 SM00448 cheY-homologous receiver domain APT56_20690 SM00862 Transcriptional regulatory protein, C terminal APT56_20700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_20730 SM00382 ATPases associated with a variety of cellular activities APT56_20750 SM00155 Phospholipase D. Active site motifs. APT56_20760 SM00342 helix_turn_helix, arabinose operon control protein APT56_20800 SM00530 Helix-turn-helix XRE-family like proteins APT56_20810 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_20810 SM00895 APT56_20810 APT56_20825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APT56_20845 SM00448 cheY-homologous receiver domain APT56_20845 SM00862 Transcriptional regulatory protein, C terminal APT56_20850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_20850 SM00387 Histidine kinase-like ATPases APT56_20850 SM00388 His Kinase A (phosphoacceptor) domain APT56_20875 SM00382 ATPases associated with a variety of cellular activities APT56_20880 SM00382 ATPases associated with a variety of cellular activities APT56_20890 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APT56_20905 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_20975 SM00530 Helix-turn-helix XRE-family like proteins APT56_20995 SM00062 Bacterial periplasmic substrate-binding proteins APT56_21000 SM00382 ATPases associated with a variety of cellular activities APT56_21015 SM01130 APT56_21015 APT56_21020 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APT56_21115 SM00342 helix_turn_helix, arabinose operon control protein APT56_21120 SM00849 Metallo-beta-lactamase superfamily APT56_21160 SM01329 APT56_21160 APT56_21175 SM00278 Helix-hairpin-helix DNA-binding motif class 1 APT56_21175 SM00465 GIY-YIG type nucleases (URI domain) APT56_21210 SM00862 Transcriptional regulatory protein, C terminal APT56_21230 SM00382 ATPases associated with a variety of cellular activities APT56_21285 SM00382 ATPases associated with a variety of cellular activities APT56_21325 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_21325 SM00895 APT56_21325 APT56_21380 SM00382 ATPases associated with a variety of cellular activities APT56_21400 SM00354 helix_turn _helix lactose operon repressor APT56_21410 SM00382 ATPases associated with a variety of cellular activities APT56_21455 SM00382 ATPases associated with a variety of cellular activities APT56_21475 SM00936 Penicillin-binding protein 5, C-terminal domain APT56_21480 SM00411 bacterial (prokaryotic) histone like domain APT56_21485 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_21575 SM01007 Class II Aldolase and Adducin N-terminal domain APT56_21660 SM00479 APT56_21660 APT56_21670 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APT56_21670 SM00091 PAS domain APT56_21670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_21680 SM00342 helix_turn_helix, arabinose operon control protein APT56_21690 SM00382 ATPases associated with a variety of cellular activities APT56_21720 SM00116 Domain in cystathionine beta-synthase and other proteins. APT56_21755 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. APT56_21760 SM00028 Tetratricopeptide repeats APT56_21780 SM00342 helix_turn_helix, arabinose operon control protein APT56_21840 SM00382 ATPases associated with a variety of cellular activities APT56_21885 SM00382 ATPases associated with a variety of cellular activities APT56_21895 SM01103 APT56_21895 APT56_21905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_21905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_21930 SM00382 ATPases associated with a variety of cellular activities APT56_21940 SM00855 Phosphoglycerate mutase family APT56_21945 SM00822 APT56_21945 APT56_21955 SM00851 MGS-like domain APT56_21955 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT56_21960 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain APT56_21975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APT56_21975 SM00387 Histidine kinase-like ATPases APT56_21975 SM00388 His Kinase A (phosphoacceptor) domain APT56_21980 SM00448 cheY-homologous receiver domain APT56_22000 SM00382 ATPases associated with a variety of cellular activities APT56_22005 SM00062 Bacterial periplasmic substrate-binding proteins APT56_22015 SM00493 APT56_22015 APT56_22025 SM00382 ATPases associated with a variety of cellular activities APT56_22080 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_22115 SM00829 Enoylreductase APT56_22190 SM00530 Helix-turn-helix XRE-family like proteins APT56_22225 SM00382 ATPases associated with a variety of cellular activities APT56_22230 SM00382 ATPases associated with a variety of cellular activities APT56_22240 SM00382 ATPases associated with a variety of cellular activities APT56_22250 SM00062 Bacterial periplasmic substrate-binding proteins APT56_22250 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. APT56_22260 SM00346 helix_turn_helix isocitrate lyase regulation APT56_22265 SM00062 Bacterial periplasmic substrate-binding proteins APT56_22275 SM00882 Coenzyme A transferase APT56_22280 SM00882 Coenzyme A transferase APT56_22285 SM00346 helix_turn_helix isocitrate lyase regulation APT56_22300 SM01001 AIR carboxylase APT56_22330 SM00382 ATPases associated with a variety of cellular activities APT56_22355 SM00346 helix_turn_helix isocitrate lyase regulation APT56_22390 SM00382 ATPases associated with a variety of cellular activities APT56_22395 SM00382 ATPases associated with a variety of cellular activities APT56_22420 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_22420 SM00866 APT56_22420 APT56_22435 SM00072 Guanylate kinase homologues. APT56_22470 SM00382 ATPases associated with a variety of cellular activities APT56_22480 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APT56_22490 SM00316 Ribosomal protein S1-like RNA-binding domain APT56_22510 SM00852 Probable molybdopterin binding domain APT56_22540 SM00271 DnaJ molecular chaperone homology domain APT56_22600 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT56_22605 SM00861 Transketolase, pyrimidine binding domain APT56_22630 SM00919 Malic enzyme, NAD binding domain APT56_22630 SM01274 APT56_22630 APT56_22675 SM00382 ATPases associated with a variety of cellular activities APT56_22710 SM00903 Flavin reductase like domain APT56_22720 SM00346 helix_turn_helix isocitrate lyase regulation APT56_22735 SM01323 APT56_22735 APT56_22755 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain APT56_22760 SM00014 Acid phosphatase homologues APT56_22765 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_22780 SM01091 Transporter associated domain APT56_22825 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) APT56_22825 SM00091 PAS domain APT56_22825 SM00421 helix_turn_helix, Lux Regulon APT56_22830 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_22830 SM00876 Biotin and Thiamin Synthesis associated domain APT56_22880 SM00852 Probable molybdopterin binding domain APT56_22895 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_22910 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APT56_22915 SM00926 Molybdopterin oxidoreductase Fe4S4 domain APT56_22915 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APT56_22975 SM00387 Histidine kinase-like ATPases APT56_22980 SM00448 cheY-homologous receiver domain APT56_22980 SM00862 Transcriptional regulatory protein, C terminal APT56_23065 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_23065 SM00895 APT56_23065 APT56_23070 SM00796 Allophanate hydrolase subunit 1 APT56_23070 SM00797 Allophanate hydrolase subunit 2 APT56_23070 SM00878 Biotin carboxylase C-terminal domain APT56_23085 SM00567 E-Z type HEAT repeats APT56_23100 SM00382 ATPases associated with a variety of cellular activities APT56_23125 SM00014 Acid phosphatase homologues APT56_23135 SM00342 helix_turn_helix, arabinose operon control protein APT56_23135 SM00478 endonuclease III APT56_23135 SM01009 AlkA N-terminal domain APT56_23145 SM00382 ATPases associated with a variety of cellular activities APT56_23165 SM00965 Secretin and TonB N terminus short domain APT56_23245 SM00344 helix_turn_helix ASNC type APT56_23260 SM00062 Bacterial periplasmic substrate-binding proteins APT56_23270 SM00382 ATPases associated with a variety of cellular activities APT56_23275 SM00257 Lysin motif APT56_23310 SM00387 Histidine kinase-like ATPases APT56_23315 SM00448 cheY-homologous receiver domain APT56_23375 SM00919 Malic enzyme, NAD binding domain APT56_23375 SM01274 APT56_23375 APT56_23385 SM00342 helix_turn_helix, arabinose operon control protein APT56_23400 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_23425 SM00822 APT56_23425 APT56_23455 SM00530 Helix-turn-helix XRE-family like proteins APT56_23460 SM00155 Phospholipase D. Active site motifs. APT56_23485 SM00342 helix_turn_helix, arabinose operon control protein APT56_23510 SM00478 endonuclease III APT56_23525 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_23525 SM00895 APT56_23525 APT56_23530 SM00965 Secretin and TonB N terminus short domain APT56_23550 SM00052 Putative diguanylate phosphodiesterase APT56_23555 SM00244 prohibitin homologues APT56_23585 SM00342 helix_turn_helix, arabinose operon control protein APT56_23685 SM00342 helix_turn_helix, arabinose operon control protein APT56_23725 SM00421 helix_turn_helix, Lux Regulon APT56_23725 SM00448 cheY-homologous receiver domain APT56_23740 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_23750 SM01012 APT56_23750 APT56_23765 SM00926 Molybdopterin oxidoreductase Fe4S4 domain APT56_23795 SM00342 helix_turn_helix, arabinose operon control protein APT56_23815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_23815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_23820 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APT56_23820 SM00267 diguanylate cyclase APT56_23825 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APT56_23845 SM00342 helix_turn_helix, arabinose operon control protein APT56_23860 SM01130 APT56_23860 APT56_23890 SM01007 Class II Aldolase and Adducin N-terminal domain APT56_23950 SM00382 ATPases associated with a variety of cellular activities APT56_23955 SM00382 ATPases associated with a variety of cellular activities APT56_23965 SM00487 DEAD-like helicases superfamily APT56_23965 SM00490 helicase superfamily c-terminal domain APT56_23980 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APT56_24085 SM00448 cheY-homologous receiver domain APT56_24090 SM00387 Histidine kinase-like ATPases APT56_24090 SM00388 His Kinase A (phosphoacceptor) domain APT56_24090 SM00448 cheY-homologous receiver domain APT56_24095 SM00138 Methyltransferase, chemotaxis proteins APT56_24105 SM00387 Histidine kinase-like ATPases APT56_24105 SM00388 His Kinase A (phosphoacceptor) domain APT56_24105 SM00448 cheY-homologous receiver domain APT56_24120 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APT56_24120 SM00245 tail specific protease APT56_24155 SM00342 helix_turn_helix, arabinose operon control protein APT56_24165 SM00052 Putative diguanylate phosphodiesterase APT56_24165 SM01034 Sensors of blue-light using FAD APT56_24185 SM00382 ATPases associated with a variety of cellular activities APT56_24185 SM00448 cheY-homologous receiver domain APT56_24190 SM00387 Histidine kinase-like ATPases APT56_24190 SM00388 His Kinase A (phosphoacceptor) domain APT56_24205 SM00822 APT56_24205 APT56_24260 SM00883 Chaperonin 10 Kd subunit APT56_24275 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_24320 SM00382 ATPases associated with a variety of cellular activities APT56_24325 SM00382 ATPases associated with a variety of cellular activities APT56_24345 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family APT56_24385 SM00346 helix_turn_helix isocitrate lyase regulation APT56_24395 SM00382 ATPases associated with a variety of cellular activities APT56_24410 SM00880 APT56_24410 APT56_24410 SM01118 APT56_24410 APT56_24415 SM00382 ATPases associated with a variety of cellular activities APT56_24415 SM00962 SRP54-type protein, GTPase domain APT56_24415 SM00963 SRP54-type protein, helical bundle domain APT56_24455 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_24465 SM00382 ATPases associated with a variety of cellular activities APT56_24495 SM01400 APT56_24495 APT56_24510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). APT56_24510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_24520 SM00028 Tetratricopeptide repeats APT56_24525 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain APT56_24525 SM01232 APT56_24525 APT56_24530 SM00849 Metallo-beta-lactamase superfamily APT56_24560 SM00563 Phosphate acyltransferases APT56_24570 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_24570 SM00895 APT56_24570 APT56_24600 SM00014 Acid phosphatase homologues APT56_24605 SM00387 Histidine kinase-like ATPases APT56_24605 SM00388 His Kinase A (phosphoacceptor) domain APT56_24610 SM00448 cheY-homologous receiver domain APT56_24610 SM00862 Transcriptional regulatory protein, C terminal APT56_24675 SM00984 UDP binding domain APT56_24700 SM00052 Putative diguanylate phosphodiesterase APT56_24700 SM00267 diguanylate cyclase APT56_24710 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_24745 SM00382 ATPases associated with a variety of cellular activities APT56_24810 SM00267 diguanylate cyclase APT56_24850 SM00450 Rhodanese Homology Domain APT56_24870 SM00530 Helix-turn-helix XRE-family like proteins APT56_24875 SM00862 Transcriptional regulatory protein, C terminal APT56_24890 SM00530 Helix-turn-helix XRE-family like proteins APT56_24905 SM00052 Putative diguanylate phosphodiesterase APT56_24930 SM00382 ATPases associated with a variety of cellular activities APT56_24945 SM00822 APT56_24945 APT56_24960 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_24965 SM00834 Putative regulatory protein APT56_24975 SM00382 ATPases associated with a variety of cellular activities APT56_24980 SM00382 ATPases associated with a variety of cellular activities APT56_25000 SM00387 Histidine kinase-like ATPases APT56_25000 SM00388 His Kinase A (phosphoacceptor) domain APT56_25000 SM00448 cheY-homologous receiver domain APT56_25005 SM00421 helix_turn_helix, Lux Regulon APT56_25005 SM00448 cheY-homologous receiver domain APT56_25115 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_25115 SM00895 APT56_25115 APT56_25140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_25140 SM00387 Histidine kinase-like ATPases APT56_25140 SM00388 His Kinase A (phosphoacceptor) domain APT56_25160 SM00100 Cyclic nucleotide-monophosphate binding domain APT56_25160 SM00419 helix_turn_helix, cAMP Regulatory protein APT56_25235 SM00257 Lysin motif APT56_25240 SM00382 ATPases associated with a variety of cellular activities APT56_25240 SM00962 SRP54-type protein, GTPase domain APT56_25240 SM00963 SRP54-type protein, helical bundle domain APT56_25255 SM00644 APT56_25255 APT56_25310 SM00382 ATPases associated with a variety of cellular activities APT56_25335 SM00346 helix_turn_helix isocitrate lyase regulation APT56_25350 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain APT56_25360 SM00382 ATPases associated with a variety of cellular activities APT56_25395 SM00387 Histidine kinase-like ATPases APT56_25495 SM00062 Bacterial periplasmic substrate-binding proteins APT56_25505 SM00382 ATPases associated with a variety of cellular activities APT56_25570 SM00232 JAB/MPN domain APT56_25610 SM00530 Helix-turn-helix XRE-family like proteins APT56_25650 SM00421 helix_turn_helix, Lux Regulon APT56_25650 SM00448 cheY-homologous receiver domain APT56_25695 SM00530 Helix-turn-helix XRE-family like proteins APT56_25725 SM00382 ATPases associated with a variety of cellular activities APT56_25735 SM01130 APT56_25735 APT56_25740 SM00346 helix_turn_helix isocitrate lyase regulation APT56_25775 SM00972 Spore Coat Protein U domain APT56_25790 SM00972 Spore Coat Protein U domain APT56_25795 SM00972 Spore Coat Protein U domain APT56_25800 SM00972 Spore Coat Protein U domain APT56_25815 SM00858 APT56_25815 APT56_25820 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_25820 SM00895 APT56_25820 APT56_25825 SM00822 APT56_25825 APT56_25850 SM00382 ATPases associated with a variety of cellular activities APT56_25855 SM00382 ATPases associated with a variety of cellular activities APT56_25860 SM00822 APT56_25860 APT56_25865 SM00861 Transketolase, pyrimidine binding domain APT56_25895 SM00342 helix_turn_helix, arabinose operon control protein APT56_25950 SM00346 helix_turn_helix isocitrate lyase regulation APT56_25955 SM00882 Coenzyme A transferase APT56_25960 SM00882 Coenzyme A transferase APT56_25995 SM00947 Carbonic anhydrase APT56_26000 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_26000 SM00895 APT56_26000 APT56_26025 SM00382 ATPases associated with a variety of cellular activities APT56_26030 SM00382 ATPases associated with a variety of cellular activities APT56_26035 SM00822 APT56_26035 APT56_26040 SM00822 APT56_26040 APT56_26095 SM00346 helix_turn_helix isocitrate lyase regulation APT56_26150 SM00937 APT56_26150 APT56_26170 SM00344 helix_turn_helix ASNC type APT56_26215 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_26215 SM00895 APT56_26215 APT56_26240 SM01007 Class II Aldolase and Adducin N-terminal domain APT56_26260 SM00422 helix_turn_helix, mercury resistance APT56_26295 SM00822 APT56_26295 APT56_26335 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase APT56_26340 SM00862 Transcriptional regulatory protein, C terminal APT56_26345 SM00530 Helix-turn-helix XRE-family like proteins APT56_26365 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_26365 SM00895 APT56_26365 APT56_26370 SM00267 diguanylate cyclase APT56_26380 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. APT56_26380 SM00245 tail specific protease APT56_26390 SM00855 Phosphoglycerate mutase family APT56_26395 SM00450 Rhodanese Homology Domain APT56_26450 SM00448 cheY-homologous receiver domain APT56_26455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain APT56_26455 SM00387 Histidine kinase-like ATPases APT56_26455 SM00388 His Kinase A (phosphoacceptor) domain APT56_26475 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_26510 SM01118 APT56_26510 APT56_26540 SM00062 Bacterial periplasmic substrate-binding proteins APT56_26560 SM00460 Transglutaminase/protease-like homologues APT56_26600 SM00382 ATPases associated with a variety of cellular activities APT56_26605 SM00382 ATPases associated with a variety of cellular activities APT56_26635 SM00116 Domain in cystathionine beta-synthase and other proteins. APT56_26655 SM00382 ATPases associated with a variety of cellular activities APT56_26675 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_26720 SM00749 bacterial OsmY and nodulation domain APT56_26795 SM00845 GatB domain APT56_26815 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT56_26855 SM00382 ATPases associated with a variety of cellular activities APT56_26860 SM00382 ATPases associated with a variety of cellular activities APT56_26870 SM00347 helix_turn_helix multiple antibiotic resistance protein APT56_26875 SM00100 Cyclic nucleotide-monophosphate binding domain APT56_26905 SM00382 ATPases associated with a variety of cellular activities APT56_26930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor APT56_26935 SM00849 Metallo-beta-lactamase superfamily APT56_26980 SM00646 APT56_26980 APT56_27015 SM00986 Uracil DNA glycosylase superfamily APT56_27015 SM00987 UreE urease accessory protein, C-terminal domain APT56_27020 SM00487 DEAD-like helicases superfamily APT56_27020 SM00490 helicase superfamily c-terminal domain APT56_27055 SM00460 Transglutaminase/protease-like homologues APT56_27080 SM00996 S-adenosyl-L-homocysteine hydrolase APT56_27080 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APT56_27120 SM00903 Flavin reductase like domain APT56_27125 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_27125 SM00895 APT56_27125 APT56_27145 SM00382 ATPases associated with a variety of cellular activities APT56_27150 SM00344 helix_turn_helix ASNC type APT56_27215 SM00382 ATPases associated with a variety of cellular activities APT56_27225 SM00833 Cobalamin synthesis protein cobW C-terminal domain APT56_27240 SM00382 ATPases associated with a variety of cellular activities APT56_27240 SM01086 C-terminal, D2-small domain, of ClpB protein APT56_27255 SM00729 Elongator protein 3, MiaB family, Radical SAM APT56_27265 SM00671 Sel1-like repeats. APT56_27285 SM00936 Penicillin-binding protein 5, C-terminal domain APT56_27305 SM00382 ATPases associated with a variety of cellular activities APT56_27365 SM00382 ATPases associated with a variety of cellular activities APT56_27425 SM00155 Phospholipase D. Active site motifs. APT56_27445 SM00834 Putative regulatory protein APT56_27475 SM01130 APT56_27475 APT56_27480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. APT56_27510 SM00345 helix_turn_helix gluconate operon transcriptional repressor APT56_27510 SM00895 APT56_27510 APT56_27570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. APT56_27600 SM01219 APT56_27600 APT56_27635 SM01004 Delta-aminolevulinic acid dehydratase APT56_27665 SM00662 RNA polymerases D APT56_27670 SM00363 S4 RNA-binding domain APT56_27670 SM01390 APT56_27670 APT56_27740 SM01374 APT56_27740 APT56_27760 SM00342 helix_turn_helix, arabinose operon control protein APT56_27775 SM00382 ATPases associated with a variety of cellular activities APT56_27780 SM00382 ATPases associated with a variety of cellular activities APT56_27815 SM00322 K homology RNA-binding domain APT56_27830 SM01382 APT56_27830 APT56_27830 SM01383 APT56_27830 APT56_27850 SM01403 APT56_27850 APT56_27860 SM00838 Elongation factor G C-terminus APT56_27860 SM00889 Elongation factor G, domain IV APT56_27875 SM00448 cheY-homologous receiver domain APT56_27875 SM00862 Transcriptional regulatory protein, C terminal APT56_27880 SM00448 cheY-homologous receiver domain APT56_27880 SM00862 Transcriptional regulatory protein, C terminal APT56_27885 SM00257 Lysin motif APT56_27890 SM00387 Histidine kinase-like ATPases APT56_27890 SM00388 His Kinase A (phosphoacceptor) domain APT56_27890 SM01080 APT56_27890