APT56_16110 871a616f47bc623a2edb74cb2eade024 894 SMART SM01086 798 891 3.5E-11 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Pfam PF07724 AAA domain (Cdc48 subfamily) 623 792 5.6E-43 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 SUPERFAMILY SSF81923 11 128 1.44E-17 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 SUPERFAMILY SSF52540 573 871 9.01E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Gene3D G3DSA:3.40.50.300 577 797 2.9E-71 T 11-10-2018 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 SUPERFAMILY SSF52540 185 572 1.07E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 229 341 5.4E-9 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Gene3D G3DSA:1.10.8.60 799 891 9.6E-11 T 11-10-2018 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 799 872 2.9E-10 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_16110 871a616f47bc623a2edb74cb2eade024 894 SMART SM00382 624 766 6.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_16110 871a616f47bc623a2edb74cb2eade024 894 SMART SM00382 224 369 2.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Gene3D G3DSA:3.40.50.300 178 368 5.6E-65 T 11-10-2018 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 320 332 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 702 720 2.6E-34 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 628 646 2.6E-34 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 673 691 2.6E-34 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 735 749 2.6E-34 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 23 74 2.2E-4 T 11-10-2018 IPR004176 Clp, N-terminal APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Gene3D G3DSA:1.10.1780.10 1 160 8.6E-44 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 882 0.0 T 11-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 APT56_16110 871a616f47bc623a2edb74cb2eade024 894 Gene3D G3DSA:3.40.50.300 370 571 2.5E-48 T 11-10-2018 APT56_07975 99712040248ba5999f3a50c2095e7b7d 553 SUPERFAMILY SSF109755 332 543 1.57E-21 T 11-10-2018 APT56_07975 99712040248ba5999f3a50c2095e7b7d 553 Pfam PF02690 Na+/Pi-cotransporter 163 241 5.0E-11 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 APT56_07975 99712040248ba5999f3a50c2095e7b7d 553 Pfam PF02690 Na+/Pi-cotransporter 16 150 3.5E-34 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 APT56_07975 99712040248ba5999f3a50c2095e7b7d 553 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 5 307 3.6E-65 T 11-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 APT56_07975 99712040248ba5999f3a50c2095e7b7d 553 Gene3D G3DSA:1.20.58.220 335 542 2.6E-5 T 11-10-2018 IPR038078 PhoU-like domain superfamily APT56_16595 39e373bd50487d0e338d478ab5215a22 136 SUPERFAMILY SSF46955 2 109 4.76E-26 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_16595 39e373bd50487d0e338d478ab5215a22 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.6E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_16595 39e373bd50487d0e338d478ab5215a22 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.6E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_16595 39e373bd50487d0e338d478ab5215a22 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.6E-8 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_16595 39e373bd50487d0e338d478ab5215a22 136 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_16595 39e373bd50487d0e338d478ab5215a22 136 Pfam PF00376 MerR family regulatory protein 2 39 1.2E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_16595 39e373bd50487d0e338d478ab5215a22 136 Gene3D G3DSA:1.10.1660.10 2 134 1.6E-26 T 11-10-2018 APT56_16595 39e373bd50487d0e338d478ab5215a22 136 Pfam PF09278 MerR, DNA binding 47 107 5.4E-15 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding APT56_16595 39e373bd50487d0e338d478ab5215a22 136 SMART SM00422 1 70 8.3E-17 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_21455 1c15bd9030a3d3c91eab97df3ed9aaf9 254 Pfam PF00005 ABC transporter 23 177 7.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21455 1c15bd9030a3d3c91eab97df3ed9aaf9 254 SUPERFAMILY SSF52540 6 248 5.53E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21455 1c15bd9030a3d3c91eab97df3ed9aaf9 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 227 248 4.7E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_21455 1c15bd9030a3d3c91eab97df3ed9aaf9 254 SMART SM00382 32 226 2.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21455 1c15bd9030a3d3c91eab97df3ed9aaf9 254 Gene3D G3DSA:3.40.50.300 2 249 1.9E-57 T 11-10-2018 APT56_27270 8e596fa51f8332988d797867ee7b8675 212 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 22 184 4.3E-50 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT56_27270 8e596fa51f8332988d797867ee7b8675 212 SUPERFAMILY SSF55681 7 205 1.57E-57 T 11-10-2018 APT56_27270 8e596fa51f8332988d797867ee7b8675 212 Gene3D G3DSA:3.30.930.10 2 204 4.9E-54 T 11-10-2018 APT56_27270 8e596fa51f8332988d797867ee7b8675 212 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 66 81 - T 11-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 APT56_27270 8e596fa51f8332988d797867ee7b8675 212 PIRSF PIRSF016262 1 210 6.2E-54 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT56_27270 8e596fa51f8332988d797867ee7b8675 212 Pfam PF03099 Biotin/lipoate A/B protein ligase family 53 161 8.7E-7 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 APT56_27270 8e596fa51f8332988d797867ee7b8675 212 Hamap MF_00013 Octanoyltransferase [lipB]. 2 208 34.574 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT56_27270 8e596fa51f8332988d797867ee7b8675 212 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 70 124 9.0E-17 T 11-10-2018 APT56_04515 fe7d52dc34950068e5cc078c8b66aba9 303 Pfam PF03466 LysR substrate binding domain 95 297 6.5E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_04515 fe7d52dc34950068e5cc078c8b66aba9 303 SUPERFAMILY SSF53850 95 299 3.26E-39 T 11-10-2018 APT56_04515 fe7d52dc34950068e5cc078c8b66aba9 303 Gene3D G3DSA:3.40.190.290 97 300 1.8E-35 T 11-10-2018 APT56_04515 fe7d52dc34950068e5cc078c8b66aba9 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.7E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04515 fe7d52dc34950068e5cc078c8b66aba9 303 Gene3D G3DSA:1.10.10.10 7 94 1.5E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04515 fe7d52dc34950068e5cc078c8b66aba9 303 SUPERFAMILY SSF46785 7 92 3.21E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03245 00a291ec7b2c1302cb28be61b6fe7fcb 362 SUPERFAMILY SSF52540 4 247 3.59E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03245 00a291ec7b2c1302cb28be61b6fe7fcb 362 SUPERFAMILY SSF50331 243 354 1.7E-7 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_03245 00a291ec7b2c1302cb28be61b6fe7fcb 362 SMART SM00382 28 217 5.8E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_03245 00a291ec7b2c1302cb28be61b6fe7fcb 362 Gene3D G3DSA:3.40.50.300 3 265 5.0E-73 T 11-10-2018 APT56_03245 00a291ec7b2c1302cb28be61b6fe7fcb 362 Pfam PF00005 ABC transporter 19 167 1.4E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_03245 00a291ec7b2c1302cb28be61b6fe7fcb 362 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 Gene3D G3DSA:3.40.190.10 92 291 2.2E-72 T 11-10-2018 APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 Gene3D G3DSA:1.10.10.10 1 91 6.5E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 Pfam PF03466 LysR substrate binding domain 88 293 1.1E-35 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.8E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 Gene3D G3DSA:3.40.190.10 163 268 2.2E-72 T 11-10-2018 APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.0E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.0E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.0E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 SUPERFAMILY SSF46785 1 111 1.49E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08245 a4aea3123eff3a11bbdfdb629271dcac 305 SUPERFAMILY SSF53850 87 294 1.57E-35 T 11-10-2018 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 SUPERFAMILY SSF52540 136 376 1.67E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14360 b81a82e8730f7659a8193251fee5e006 456 Gene3D G3DSA:1.10.10.60 397 440 5.5E-13 T 11-10-2018 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 SMART SM00382 156 300 1.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14360 b81a82e8730f7659a8193251fee5e006 456 Pfam PF00072 Response regulator receiver domain 5 110 7.5E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 SUPERFAMILY SSF52172 1 181 3.42E-35 T 11-10-2018 IPR011006 CheY-like superfamily APT56_14360 b81a82e8730f7659a8193251fee5e006 456 Gene3D G3DSA:3.40.50.2300 3 118 1.5E-28 T 11-10-2018 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 SMART SM00448 2 114 5.6E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 Pfam PF02954 Bacterial regulatory protein, Fis family 398 439 1.3E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 Gene3D G3DSA:1.10.8.60 307 383 8.1E-22 T 11-10-2018 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 422 442 1.2E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 405 422 1.2E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 222 237 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 Pfam PF00158 Sigma-54 interaction domain 137 302 1.2E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 SUPERFAMILY SSF46689 348 439 5.82E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 Gene3D G3DSA:3.40.50.300 129 306 4.9E-67 T 11-10-2018 APT56_14360 b81a82e8730f7659a8193251fee5e006 456 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 348 357 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site APT56_13240 31a41243b2ee245f99b5eb7088f1bb6d 171 Pfam PF08281 Sigma-70, region 4 111 163 1.2E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_13240 31a41243b2ee245f99b5eb7088f1bb6d 171 SUPERFAMILY SSF88946 10 99 5.89E-16 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_13240 31a41243b2ee245f99b5eb7088f1bb6d 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 161 2.1E-22 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_13240 31a41243b2ee245f99b5eb7088f1bb6d 171 SUPERFAMILY SSF88659 91 163 1.59E-12 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_13240 31a41243b2ee245f99b5eb7088f1bb6d 171 Pfam PF04542 Sigma-70 region 2 15 80 1.6E-14 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_13240 31a41243b2ee245f99b5eb7088f1bb6d 171 Gene3D G3DSA:1.10.1740.10 7 79 2.0E-10 T 11-10-2018 APT56_13240 31a41243b2ee245f99b5eb7088f1bb6d 171 Gene3D G3DSA:1.10.10.10 80 164 3.6E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 Gene3D G3DSA:2.40.10.120 48 287 3.4E-81 T 11-10-2018 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 Pfam PF13180 PDZ domain 428 493 8.1E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 Pfam PF13180 PDZ domain 297 385 1.3E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 SUPERFAMILY SSF50494 48 285 5.8E-67 T 11-10-2018 IPR009003 Peptidase S1, PA clan APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 Gene3D G3DSA:2.30.42.10 406 497 1.3E-13 T 11-10-2018 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 Gene3D G3DSA:2.30.42.10 289 393 4.5E-27 T 11-10-2018 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 Pfam PF13365 Trypsin-like peptidase domain 124 255 5.0E-34 T 11-10-2018 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 SMART SM00228 408 486 6.7E-4 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 SMART SM00228 294 376 1.4E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 50 491 1.1E-144 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 SUPERFAMILY SSF50156 252 377 5.26E-22 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 SUPERFAMILY SSF50156 409 493 8.28E-13 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 PRINTS PR00834 HtrA/DegQ protease family signature 334 346 1.1E-52 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 PRINTS PR00834 HtrA/DegQ protease family signature 154 174 1.1E-52 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 PRINTS PR00834 HtrA/DegQ protease family signature 248 265 1.1E-52 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 PRINTS PR00834 HtrA/DegQ protease family signature 226 243 1.1E-52 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 PRINTS PR00834 HtrA/DegQ protease family signature 133 145 1.1E-52 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_06825 7e37fb54e3f9b83302add320b84e920b 497 PRINTS PR00834 HtrA/DegQ protease family signature 194 218 1.1E-52 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 Gene3D G3DSA:1.10.1740.60 200 283 4.1E-35 T 11-10-2018 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 Gene3D G3DSA:2.60.40.1840 464 572 5.4E-30 T 11-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 Pfam PF01433 Peptidase family M1 domain 212 444 1.0E-54 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 Gene3D G3DSA:1.25.50.10 573 898 2.7E-112 T 11-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 SUPERFAMILY SSF55486 208 470 5.71E-72 T 11-10-2018 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 575 898 8.3E-115 T 11-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 SUPERFAMILY SSF63737 9 196 2.35E-39 T 11-10-2018 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 Gene3D G3DSA:2.60.40.1730 16 198 1.1E-65 T 11-10-2018 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 Gene3D G3DSA:1.10.390.10 284 463 2.4E-62 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 180 195 6.3E-7 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 298 313 6.3E-7 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 262 272 6.3E-7 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 317 329 6.3E-7 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 464 572 2.1E-24 T 11-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold APT56_08405 ad8b2b039307db6b441df4e639dc3091 901 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 897 0.0 T 11-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 SUPERFAMILY SSF52317 2 187 8.83E-57 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 Gene3D G3DSA:3.40.50.880 1 188 3.6E-63 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 2.1E-13 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 2.1E-13 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 2.1E-13 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.4E-6 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.4E-6 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 Pfam PF00117 Glutamine amidotransferase class-I 4 185 1.2E-54 T 11-10-2018 IPR017926 Glutamine amidotransferase APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00097 Anthranilate synthase component II signature 119 131 4.2E-33 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00097 Anthranilate synthase component II signature 164 177 4.2E-33 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00097 Anthranilate synthase component II signature 2 16 4.2E-33 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00097 Anthranilate synthase component II signature 47 56 4.2E-33 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00097 Anthranilate synthase component II signature 99 107 4.2E-33 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 PRINTS PR00097 Anthranilate synthase component II signature 74 85 4.2E-33 T 11-10-2018 APT56_02030 22a9f4fb5180708db9ca5aad565ab8e7 188 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 1.6E-77 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_18020 02a1496d1d0b198464b9b606678b22dd 234 Pfam PF03575 Peptidase family S51 3 207 3.5E-56 T 11-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 APT56_18020 02a1496d1d0b198464b9b606678b22dd 234 Gene3D G3DSA:3.40.50.880 1 228 1.7E-58 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_18020 02a1496d1d0b198464b9b606678b22dd 234 SUPERFAMILY SSF52317 3 216 1.05E-38 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_19165 d174641ce952ff293c8c65a5ec0dafd6 4231 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 4036 4146 4.2E-38 T 11-10-2018 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 APT56_19165 d174641ce952ff293c8c65a5ec0dafd6 4231 Pfam PF05860 haemagglutination activity domain 156 255 1.7E-19 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_19165 d174641ce952ff293c8c65a5ec0dafd6 4231 Gene3D G3DSA:2.160.20.10 148 503 6.5E-50 T 11-10-2018 IPR012334 Pectin lyase fold APT56_19165 d174641ce952ff293c8c65a5ec0dafd6 4231 SMART SM00912 151 255 4.4E-23 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_19165 d174641ce952ff293c8c65a5ec0dafd6 4231 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 176 250 1.4E-18 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_19165 d174641ce952ff293c8c65a5ec0dafd6 4231 SUPERFAMILY SSF51126 165 486 2.17E-33 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_02900 a388464d870e4858fa103e16c46b6b61 258 Pfam PF04170 NlpE N-terminal domain 139 219 6.3E-5 T 11-10-2018 IPR007298 Copper resistance lipoprotein NlpE APT56_02900 a388464d870e4858fa103e16c46b6b61 258 Gene3D G3DSA:2.40.128.300 118 220 5.0E-8 T 11-10-2018 APT56_03855 0827a22b3cc73ef2c8af4da421fd062b 292 SUPERFAMILY SSF51690 126 291 1.81E-56 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APT56_03855 0827a22b3cc73ef2c8af4da421fd062b 292 Gene3D G3DSA:3.90.1170.20 29 290 3.1E-101 T 11-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 APT56_03855 0827a22b3cc73ef2c8af4da421fd062b 292 PIRSF PIRSF006250 19 292 3.9E-92 T 11-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 APT56_03855 0827a22b3cc73ef2c8af4da421fd062b 292 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 37 124 4.3E-25 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 APT56_03855 0827a22b3cc73ef2c8af4da421fd062b 292 SUPERFAMILY SSF54675 14 125 3.73E-32 T 11-10-2018 APT56_03855 0827a22b3cc73ef2c8af4da421fd062b 292 Gene3D G3DSA:3.20.20.70 140 282 3.1E-101 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_03855 0827a22b3cc73ef2c8af4da421fd062b 292 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 26 291 2.6E-96 T 11-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 APT56_03855 0827a22b3cc73ef2c8af4da421fd062b 292 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 126 291 1.2E-58 T 11-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 22 715 3.2E-299 T 11-10-2018 IPR017750 ATPase, type I secretion system APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 Gene3D G3DSA:3.90.70.10 17 143 9.6E-36 T 11-10-2018 APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 SUPERFAMILY SSF52540 476 710 1.01E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 Gene3D G3DSA:1.20.1560.10 159 470 5.9E-49 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 Pfam PF03412 Peptidase C39 family 21 141 1.9E-5 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 SMART SM00382 512 698 8.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 SUPERFAMILY SSF90123 159 471 3.27E-52 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 Pfam PF00664 ABC transporter transmembrane region 175 432 4.4E-22 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 Gene3D G3DSA:3.40.50.300 478 717 9.4E-77 T 11-10-2018 APT56_09765 0635614b18c6f70bb24db1a6f0aac298 721 Pfam PF00005 ABC transporter 503 651 1.1E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17935 39f5cc998aabfbbcc6641697bd4b1e18 310 PIRSF PIRSF018266 4 309 1.7E-58 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_17935 39f5cc998aabfbbcc6641697bd4b1e18 310 Gene3D G3DSA:2.60.120.1440 103 229 1.9E-16 T 11-10-2018 APT56_17935 39f5cc998aabfbbcc6641697bd4b1e18 310 Pfam PF04773 FecR protein 110 196 5.6E-14 T 11-10-2018 IPR006860 FecR protein APT56_17935 39f5cc998aabfbbcc6641697bd4b1e18 310 Pfam PF16220 Domain of unknown function (DUF4880) 15 56 3.0E-11 T 11-10-2018 IPR032623 FecR, N-terminal APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 1.1E-33 T 11-10-2018 APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 1.1E-33 T 11-10-2018 APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 1.1E-33 T 11-10-2018 APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 318 336 1.1E-33 T 11-10-2018 APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 1.1E-33 T 11-10-2018 APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 Gene3D G3DSA:3.50.50.60 9 347 4.3E-83 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 Gene3D G3DSA:3.40.30.120 389 531 6.7E-15 T 11-10-2018 APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 SUPERFAMILY SSF51905 7 380 2.07E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 Pfam PF01494 FAD binding domain 7 346 2.8E-58 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_04615 0f7e5d946c0338eb3c03b97a10915019 544 Gene3D G3DSA:3.30.70.2450 186 274 4.3E-83 T 11-10-2018 APT56_06345 2c2d2f00c555b8968caccea6b5a64980 500 Gene3D G3DSA:3.10.105.10 252 472 2.9E-121 T 11-10-2018 APT56_06345 2c2d2f00c555b8968caccea6b5a64980 500 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 65 418 1.6E-86 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_06345 2c2d2f00c555b8968caccea6b5a64980 500 SUPERFAMILY SSF53850 19 497 1.4E-131 T 11-10-2018 APT56_06345 2c2d2f00c555b8968caccea6b5a64980 500 Gene3D G3DSA:3.90.76.10 32 176 2.9E-121 T 11-10-2018 APT56_06345 2c2d2f00c555b8968caccea6b5a64980 500 Gene3D G3DSA:3.40.190.10 177 482 2.9E-121 T 11-10-2018 APT56_06345 2c2d2f00c555b8968caccea6b5a64980 500 PIRSF PIRSF002741 7 496 1.3E-104 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_25225 a1edae58a587757c1b80f06962482cfb 313 SUPERFAMILY SSF53474 2 304 1.12E-64 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_25225 a1edae58a587757c1b80f06962482cfb 313 Pfam PF00561 alpha/beta hydrolase fold 36 293 5.9E-30 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_25225 a1edae58a587757c1b80f06962482cfb 313 PIRSF PIRSF006431 1 313 2.1E-136 T 11-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 APT56_25225 a1edae58a587757c1b80f06962482cfb 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 35 43 5.6E-14 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT56_25225 a1edae58a587757c1b80f06962482cfb 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 61 72 5.6E-14 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT56_25225 a1edae58a587757c1b80f06962482cfb 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 105 119 5.6E-14 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 APT56_25225 a1edae58a587757c1b80f06962482cfb 313 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 7 310 2.8E-126 T 11-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 APT56_25225 a1edae58a587757c1b80f06962482cfb 313 Gene3D G3DSA:3.40.50.1820 1 313 6.7E-105 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 SMART SM00344 5 111 3.0E-22 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 Gene3D G3DSA:1.10.10.10 1 59 2.5E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 Pfam PF01037 Lrp/AsnC ligand binding domain 73 141 1.2E-17 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 Gene3D G3DSA:3.30.70.920 62 148 3.1E-19 T 11-10-2018 APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 Pfam PF13404 AsnC-type helix-turn-helix domain 5 46 4.9E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 SUPERFAMILY SSF54909 67 146 1.02E-17 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 SUPERFAMILY SSF46785 4 59 5.46E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 4.5E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 4.5E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_08125 65a7c47928faf6352245e43b3accc1d9 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 4.5E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 PIRSF PIRSF016578 211 382 2.8E-11 T 11-10-2018 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 PIRSF PIRSF016578 3 193 9.5E-7 T 11-10-2018 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 116 1.7E-26 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 215 5.9E-26 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 Gene3D G3DSA:1.20.140.10 232 382 1.1E-52 T 11-10-2018 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 Gene3D G3DSA:2.40.110.10 120 231 7.3E-44 T 11-10-2018 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 Gene3D G3DSA:1.10.540.10 1 119 4.1E-32 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 377 2.8E-45 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 SUPERFAMILY SSF47203 225 378 4.99E-57 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_12400 3a6e8f5b6a91d3835eb51ed59ee60b06 384 SUPERFAMILY SSF56645 2 240 1.06E-77 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_04605 c49366ac74103f98f301279a31a09c68 151 SMART SM00347 28 128 5.4E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_04605 c49366ac74103f98f301279a31a09c68 151 Gene3D G3DSA:1.10.10.10 2 145 2.9E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04605 c49366ac74103f98f301279a31a09c68 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 3.1E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_04605 c49366ac74103f98f301279a31a09c68 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 3.1E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_04605 c49366ac74103f98f301279a31a09c68 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 3.1E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_04605 c49366ac74103f98f301279a31a09c68 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 3.1E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_04605 c49366ac74103f98f301279a31a09c68 151 ProSitePatterns PS01117 MarR-type HTH domain signature. 67 101 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_04605 c49366ac74103f98f301279a31a09c68 151 Pfam PF12802 MarR family 34 92 5.2E-14 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_04605 c49366ac74103f98f301279a31a09c68 151 SUPERFAMILY SSF46785 5 144 3.5E-28 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18835 9bc3cc0efe9dc21fd87916dfac265875 329 Gene3D G3DSA:3.40.190.150 33 319 4.2E-104 T 11-10-2018 APT56_18835 9bc3cc0efe9dc21fd87916dfac265875 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 326 6.6E-76 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18835 9bc3cc0efe9dc21fd87916dfac265875 329 PIRSF PIRSF017082 1 328 5.7E-71 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18835 9bc3cc0efe9dc21fd87916dfac265875 329 SUPERFAMILY SSF53850 119 290 7.1E-14 T 11-10-2018 APT56_18835 9bc3cc0efe9dc21fd87916dfac265875 329 Gene3D G3DSA:3.40.190.10 130 254 4.2E-104 T 11-10-2018 APT56_26955 35d6576c807fb8606f58d8c4baebebb6 382 Pfam PF13439 Glycosyltransferase Family 4 26 172 1.4E-14 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_26955 35d6576c807fb8606f58d8c4baebebb6 382 Gene3D G3DSA:3.40.50.2000 183 351 1.1E-49 T 11-10-2018 APT56_26955 35d6576c807fb8606f58d8c4baebebb6 382 SUPERFAMILY SSF53756 16 367 1.5E-76 T 11-10-2018 APT56_26955 35d6576c807fb8606f58d8c4baebebb6 382 Pfam PF00534 Glycosyl transferases group 1 184 346 3.8E-35 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_26955 35d6576c807fb8606f58d8c4baebebb6 382 Gene3D G3DSA:3.40.50.2000 15 182 1.4E-15 T 11-10-2018 APT56_03340 9a33954d6f03ff81e589a72d9a907761 375 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 123 332 1.2E-14 T 11-10-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT APT56_03340 9a33954d6f03ff81e589a72d9a907761 375 PIRSF PIRSF016636 35 374 7.5E-73 T 11-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 Hamap MF_00105 Transcription elongation factor GreA [greA]. 27 180 27.319 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 SUPERFAMILY SSF46557 28 102 6.41E-27 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 PIRSF PIRSF006092 25 182 7.3E-44 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 42 73 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 27 182 1.2E-64 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 Hamap MF_00930 Transcription elongation factor GreB [greB]. 26 182 52.348 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 Pfam PF03449 Transcription elongation factor, N-terminal 29 99 9.8E-25 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 Gene3D G3DSA:3.10.50.30 104 182 8.1E-27 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 Gene3D G3DSA:1.10.287.180 27 101 4.9E-27 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 145 161 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 SUPERFAMILY SSF54534 106 181 2.49E-20 T 11-10-2018 APT56_17305 8c6e30f70a943fb7d1cc03c95e460484 183 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 108 181 3.7E-24 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 APT56_08690 d0e30ef2b7767a11b614df435df04f36 438 Pfam PF12867 DinB superfamily 26 160 4.3E-15 T 11-10-2018 IPR024775 DinB-like domain APT56_08690 d0e30ef2b7767a11b614df435df04f36 438 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 24 435 6.6E-166 T 11-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 APT56_08690 d0e30ef2b7767a11b614df435df04f36 438 SUPERFAMILY SSF109854 20 156 3.66E-6 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes APT56_08690 d0e30ef2b7767a11b614df435df04f36 438 Gene3D G3DSA:3.90.1580.10 187 438 2.9E-37 T 11-10-2018 APT56_08690 d0e30ef2b7767a11b614df435df04f36 438 SUPERFAMILY SSF56436 190 437 3.53E-67 T 11-10-2018 IPR016187 C-type lectin fold APT56_08690 d0e30ef2b7767a11b614df435df04f36 438 Pfam PF03781 Sulfatase-modifying factor enzyme 1 192 436 9.4E-33 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 Pfam PF13426 PAS domain 123 225 7.0E-9 T 11-10-2018 IPR000014 PAS domain APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 Gene3D G3DSA:3.20.20.450 408 659 5.8E-93 T 11-10-2018 IPR035919 EAL domain superfamily APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 234 394 7.8E-34 T 11-10-2018 IPR000160 GGDEF domain APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 Pfam PF00563 EAL domain 412 645 4.3E-68 T 11-10-2018 IPR001633 EAL domain APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 Pfam PF00990 Diguanylate cyclase, GGDEF domain 237 390 1.9E-46 T 11-10-2018 IPR000160 GGDEF domain APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 SMART SM00091 111 177 0.0028 T 11-10-2018 IPR000014 PAS domain APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 SUPERFAMILY SSF55785 124 234 1.77E-14 T 11-10-2018 IPR035965 PAS domain superfamily APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 SUPERFAMILY SSF55073 242 397 2.98E-45 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 Gene3D G3DSA:3.30.70.270 234 407 3.4E-57 T 11-10-2018 APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 116 233 9.9E-11 T 11-10-2018 IPR000014 PAS domain APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 SMART SM00052 405 650 1.8E-107 T 11-10-2018 IPR001633 EAL domain APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 SMART SM00267 226 395 1.1E-63 T 11-10-2018 IPR000160 GGDEF domain APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 SUPERFAMILY SSF141868 412 660 2.62E-85 T 11-10-2018 IPR035919 EAL domain superfamily APT56_11110 b1749cd947f2f653d5ec5f0aaacb1cb1 665 Gene3D G3DSA:3.30.450.20 103 233 5.7E-15 T 11-10-2018 APT56_27395 bcb97e8174aaf31ccfabdef5e6d6150f 189 SUPERFAMILY SSF55961 1 145 3.15E-29 T 11-10-2018 APT56_27395 bcb97e8174aaf31ccfabdef5e6d6150f 189 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 9 140 5.1E-31 T 11-10-2018 IPR010419 Carbon monoxide dehydrogenase subunit G APT56_27395 bcb97e8174aaf31ccfabdef5e6d6150f 189 Gene3D G3DSA:3.30.530.20 1 150 1.9E-32 T 11-10-2018 IPR023393 START-like domain superfamily APT56_14125 09bfe16d9529cd770e07d9a5629bc967 720 Pfam PF03212 Pertactin 215 307 8.1E-10 T 11-10-2018 IPR004899 Pertactin, central region APT56_14125 09bfe16d9529cd770e07d9a5629bc967 720 Gene3D G3DSA:2.160.20.20 1 351 2.8E-58 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily APT56_14125 09bfe16d9529cd770e07d9a5629bc967 720 Pfam PF03797 Autotransporter beta-domain 441 697 1.2E-35 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_14125 09bfe16d9529cd770e07d9a5629bc967 720 Gene3D G3DSA:2.40.128.130 389 720 9.7E-72 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_14125 09bfe16d9529cd770e07d9a5629bc967 720 SMART SM00869 438 709 3.2E-32 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_14125 09bfe16d9529cd770e07d9a5629bc967 720 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 228 720 1.8E-75 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_14125 09bfe16d9529cd770e07d9a5629bc967 720 SUPERFAMILY SSF103515 404 720 1.7E-34 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_14125 09bfe16d9529cd770e07d9a5629bc967 720 SUPERFAMILY SSF51126 2 351 1.66E-35 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_26145 460180776c6b6559072c65702593efab 275 Pfam PF05175 Methyltransferase small domain 99 186 3.6E-14 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 APT56_26145 460180776c6b6559072c65702593efab 275 SUPERFAMILY SSF53335 5 269 2.07E-54 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_26145 460180776c6b6559072c65702593efab 275 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 14 270 4.9E-72 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 APT56_26145 460180776c6b6559072c65702593efab 275 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 1 271 45.155 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 APT56_26145 460180776c6b6559072c65702593efab 275 Gene3D G3DSA:1.10.8.10 1 78 7.8E-21 T 11-10-2018 APT56_26145 460180776c6b6559072c65702593efab 275 Gene3D G3DSA:3.40.50.150 79 270 2.0E-56 T 11-10-2018 APT56_26145 460180776c6b6559072c65702593efab 275 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 19 266 2.7E-90 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 APT56_26145 460180776c6b6559072c65702593efab 275 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 176 182 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT56_24660 ec56ad3538eb60e6b4b3eddd68abfd3e 381 Pfam PF13439 Glycosyltransferase Family 4 23 181 6.6E-23 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_24660 ec56ad3538eb60e6b4b3eddd68abfd3e 381 Gene3D G3DSA:3.40.50.2000 196 364 2.6E-44 T 11-10-2018 APT56_24660 ec56ad3538eb60e6b4b3eddd68abfd3e 381 SUPERFAMILY SSF53756 12 374 1.54E-80 T 11-10-2018 APT56_24660 ec56ad3538eb60e6b4b3eddd68abfd3e 381 Pfam PF00534 Glycosyl transferases group 1 198 354 1.3E-35 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_24660 ec56ad3538eb60e6b4b3eddd68abfd3e 381 Gene3D G3DSA:3.40.50.2000 12 189 2.6E-23 T 11-10-2018 APT56_09810 b3293811f8c47baa0bc31744038869a5 364 Gene3D G3DSA:3.40.190.10 153 323 3.2E-107 T 11-10-2018 APT56_09810 b3293811f8c47baa0bc31744038869a5 364 Gene3D G3DSA:3.40.190.170 34 337 3.2E-107 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_09810 b3293811f8c47baa0bc31744038869a5 364 PIRSF PIRSF039026 1 356 8.6E-105 T 11-10-2018 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like APT56_09810 b3293811f8c47baa0bc31744038869a5 364 SUPERFAMILY SSF53850 165 319 2.31E-7 T 11-10-2018 APT56_09810 b3293811f8c47baa0bc31744038869a5 364 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 21 0.0014 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APT56_09810 b3293811f8c47baa0bc31744038869a5 364 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 42 323 2.3E-45 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 Gene3D G3DSA:3.40.50.970 397 589 4.6E-65 T 11-10-2018 APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 SUPERFAMILY SSF52518 400 600 3.84E-53 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 Pfam PF02779 Transketolase, pyrimidine binding domain 402 573 4.4E-36 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 Pfam PF02780 Transketolase, C-terminal domain 591 712 2.4E-22 T 11-10-2018 IPR033248 Transketolase, C-terminal domain APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 SMART SM00861 399 575 4.0E-43 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 SUPERFAMILY SSF52922 585 720 6.28E-26 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 SUPERFAMILY SSF52518 26 366 8.76E-73 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 Gene3D G3DSA:3.40.50.920 590 721 3.0E-37 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 Gene3D G3DSA:3.40.50.970 8 363 1.4E-94 T 11-10-2018 APT56_25865 64bc5603ed19ea0ff468e02922fe3320 727 Pfam PF00676 Dehydrogenase E1 component 124 352 8.9E-52 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 APT56_06260 fcb3321a0fae04c32c9af16422c4908e 519 SUPERFAMILY SSF53850 21 504 1.55E-115 T 11-10-2018 APT56_06260 fcb3321a0fae04c32c9af16422c4908e 519 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 73 95 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site APT56_06260 fcb3321a0fae04c32c9af16422c4908e 519 Gene3D G3DSA:3.40.190.10 190 503 6.7E-112 T 11-10-2018 APT56_06260 fcb3321a0fae04c32c9af16422c4908e 519 PIRSF PIRSF002741 10 512 1.2E-96 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_06260 fcb3321a0fae04c32c9af16422c4908e 519 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 67 437 3.0E-80 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_06260 fcb3321a0fae04c32c9af16422c4908e 519 Gene3D G3DSA:3.10.105.10 283 494 6.7E-112 T 11-10-2018 APT56_06260 fcb3321a0fae04c32c9af16422c4908e 519 Gene3D G3DSA:3.90.76.10 40 189 6.7E-112 T 11-10-2018 APT56_22355 bc2a84fb07efbfba44d2f85ec983d161 257 SUPERFAMILY SSF46785 10 81 5.0E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22355 bc2a84fb07efbfba44d2f85ec983d161 257 Pfam PF01614 Bacterial transcriptional regulator 130 251 1.6E-23 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_22355 bc2a84fb07efbfba44d2f85ec983d161 257 Gene3D G3DSA:1.10.10.10 1 75 5.2E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22355 bc2a84fb07efbfba44d2f85ec983d161 257 Pfam PF09339 IclR helix-turn-helix domain 11 60 2.9E-18 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_22355 bc2a84fb07efbfba44d2f85ec983d161 257 Gene3D G3DSA:3.30.450.40 82 255 2.8E-41 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_22355 bc2a84fb07efbfba44d2f85ec983d161 257 SUPERFAMILY SSF55781 80 252 1.24E-40 T 11-10-2018 APT56_22355 bc2a84fb07efbfba44d2f85ec983d161 257 SMART SM00346 9 99 1.7E-23 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_07595 609f8d94f4720c72009dd3331f050e6f 329 SUPERFAMILY SSF51735 2 327 4.5E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_07595 609f8d94f4720c72009dd3331f050e6f 329 Gene3D G3DSA:3.40.50.720 3 322 3.9E-123 T 11-10-2018 APT56_07595 609f8d94f4720c72009dd3331f050e6f 329 Gene3D G3DSA:3.90.25.10 166 309 3.9E-123 T 11-10-2018 APT56_07595 609f8d94f4720c72009dd3331f050e6f 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 240 1.0E-42 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_07595 609f8d94f4720c72009dd3331f050e6f 329 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 328 49.546 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 APT56_07595 609f8d94f4720c72009dd3331f050e6f 329 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 325 5.1E-128 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 APT56_03615 bd5629485f34622e7a2e4727f4b00c8f 424 Gene3D G3DSA:2.130.10.10 274 421 3.2E-7 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_03615 bd5629485f34622e7a2e4727f4b00c8f 424 SUPERFAMILY SSF82171 177 419 4.9E-14 T 11-10-2018 APT56_18035 30f24a1aa0fda32b59863822220114fb 212 Pfam PF09335 SNARE associated Golgi protein 39 163 9.2E-16 T 11-10-2018 IPR032816 SNARE associated Golgi protein APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 Gene3D G3DSA:2.30.110.50 34 353 2.3E-60 T 11-10-2018 APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 Gene3D G3DSA:3.55.50.10 105 205 2.3E-60 T 11-10-2018 APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 Gene3D G3DSA:3.30.1920.30 240 306 2.3E-60 T 11-10-2018 APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 SUPERFAMILY SSF69255 440 533 8.63E-20 T 11-10-2018 APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 SUPERFAMILY SSF69279 18 187 4.82E-39 T 11-10-2018 APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 772 927 7.7E-40 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 Gene3D G3DSA:2.40.50.230 431 537 1.0E-27 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 603 711 1.9E-30 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 SUPERFAMILY SSF69279 224 429 1.39E-10 T 11-10-2018 APT56_16200 19ea1bf8a601c84254f01a05a5ebc351 957 Pfam PF05954 Phage late control gene D protein (GPD) 36 357 2.7E-67 T 11-10-2018 APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 Gene3D G3DSA:3.40.50.300 13 177 6.9E-98 T 11-10-2018 APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 Gene3D G3DSA:1.10.8.60 8 239 6.9E-98 T 11-10-2018 APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 Pfam PF13177 DNA polymerase III, delta subunit 20 178 2.4E-37 T 11-10-2018 APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 1.8E-121 T 11-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 643 759 1.5E-6 T 11-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 366 3.2E-19 T 11-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 Gene3D G3DSA:1.20.272.10 242 361 1.5E-30 T 11-10-2018 APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 SMART SM00382 37 179 5.6E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 SUPERFAMILY SSF52540 34 224 4.57E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22025 e97d9f17d2c4dd33d84970b1234896f0 770 SUPERFAMILY SSF48019 243 360 2.38E-23 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 SUPERFAMILY SSF55781 545 689 2.12E-6 T 11-10-2018 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Pfam PF00512 His Kinase A (phospho-acceptor) domain 697 762 4.3E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Pfam PF13492 GAF domain 577 677 1.8E-10 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Gene3D G3DSA:3.30.565.10 770 919 2.1E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 PRINTS PR00344 Bacterial sensor protein C-terminal signature 903 916 5.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 PRINTS PR00344 Bacterial sensor protein C-terminal signature 844 858 5.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 PRINTS PR00344 Bacterial sensor protein C-terminal signature 877 895 5.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 PRINTS PR00344 Bacterial sensor protein C-terminal signature 862 872 5.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 SUPERFAMILY SSF47384 691 763 3.92E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Gene3D G3DSA:1.10.287.130 690 763 2.8E-16 T 11-10-2018 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Gene3D G3DSA:3.30.450.40 543 688 4.4E-36 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Gene3D G3DSA:3.40.50.620 242 364 9.5E-7 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 SUPERFAMILY SSF52402 258 360 2.34E-6 T 11-10-2018 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 27 235 5.8E-93 T 11-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 SMART SM00388 696 763 1.3E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Gene3D G3DSA:3.40.50.300 25 234 1.3E-96 T 11-10-2018 APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 SMART SM00387 807 919 1.3E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 SUPERFAMILY SSF55874 753 922 3.27E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Pfam PF13493 Domain of unknown function (DUF4118) 434 539 1.9E-28 T 11-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Gene3D G3DSA:1.20.120.620 429 534 3.5E-33 T 11-10-2018 IPR038318 KdpD, transmembrane domain superfamily APT56_05690 1d82bd6a8a1dd807a8da3063ca832ea5 928 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 811 918 1.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_03500 b8b9eb534078d813d1a70abbc1dc9483 123 Pfam PF01521 Iron-sulphur cluster biosynthesis 19 118 1.1E-20 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 APT56_03500 b8b9eb534078d813d1a70abbc1dc9483 123 Gene3D G3DSA:2.60.300.12 17 123 1.2E-34 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APT56_03500 b8b9eb534078d813d1a70abbc1dc9483 123 SUPERFAMILY SSF89360 15 109 1.9E-31 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APT56_03500 b8b9eb534078d813d1a70abbc1dc9483 123 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 123 37.466 T 11-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 APT56_03500 b8b9eb534078d813d1a70abbc1dc9483 123 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 104 121 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 APT56_03500 b8b9eb534078d813d1a70abbc1dc9483 123 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 20 123 6.6E-39 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 155 9.6E-66 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 ProSitePatterns PS00938 Initiation factor 3 signature. 43 56 - T 11-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 61 1.0E-24 T 11-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 68 153 1.9E-39 T 11-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 SUPERFAMILY SSF54364 1 62 5.62E-24 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 155 27.36 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 Gene3D G3DSA:3.30.110.10 61 156 6.0E-38 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 Gene3D G3DSA:3.10.20.80 1 60 1.8E-24 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APT56_09975 e9eaf8c62aec2b3c58613a105f3f84a5 166 SUPERFAMILY SSF55200 67 155 1.29E-34 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 APT56_12550 9022d7d6ae5b98b5400240a6227692fa 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 3.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_12550 9022d7d6ae5b98b5400240a6227692fa 290 SUPERFAMILY SSF46785 6 115 7.07E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12550 9022d7d6ae5b98b5400240a6227692fa 290 Gene3D G3DSA:3.40.190.10 165 255 1.1E-42 T 11-10-2018 APT56_12550 9022d7d6ae5b98b5400240a6227692fa 290 Gene3D G3DSA:3.40.190.10 104 283 1.1E-42 T 11-10-2018 APT56_12550 9022d7d6ae5b98b5400240a6227692fa 290 Pfam PF03466 LysR substrate binding domain 94 287 2.1E-26 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_12550 9022d7d6ae5b98b5400240a6227692fa 290 Gene3D G3DSA:1.10.10.10 8 96 1.8E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12550 9022d7d6ae5b98b5400240a6227692fa 290 SUPERFAMILY SSF53850 94 289 6.7E-29 T 11-10-2018 APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 Pfam PF00990 Diguanylate cyclase, GGDEF domain 264 417 4.2E-49 T 11-10-2018 IPR000160 GGDEF domain APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 Pfam PF03707 Bacterial signalling protein N terminal repeat 183 246 3.2E-11 T 11-10-2018 IPR005330 MHYT domain APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 Pfam PF03707 Bacterial signalling protein N terminal repeat 53 110 2.0E-21 T 11-10-2018 IPR005330 MHYT domain APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 Pfam PF03707 Bacterial signalling protein N terminal repeat 116 171 5.6E-16 T 11-10-2018 IPR005330 MHYT domain APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 262 418 5.9E-43 T 11-10-2018 IPR000160 GGDEF domain APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 SMART SM00267 253 424 6.0E-65 T 11-10-2018 IPR000160 GGDEF domain APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 SMART SM00052 434 680 4.4E-120 T 11-10-2018 IPR001633 EAL domain APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 SUPERFAMILY SSF141868 440 684 4.32E-90 T 11-10-2018 IPR035919 EAL domain superfamily APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 Pfam PF00563 EAL domain 441 675 6.1E-74 T 11-10-2018 IPR001633 EAL domain APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 SUPERFAMILY SSF55073 269 426 9.73E-52 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 Gene3D G3DSA:3.30.70.270 259 436 2.0E-61 T 11-10-2018 APT56_24700 8b8d9044f251462ef2c171ec652e28bc 687 Gene3D G3DSA:3.20.20.450 437 686 2.5E-101 T 11-10-2018 IPR035919 EAL domain superfamily APT56_05765 7536e0bed7e5c252b5378b59cc013cfe 333 SMART SM00382 47 238 5.6E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05765 7536e0bed7e5c252b5378b59cc013cfe 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 323 3.1E-24 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_05765 7536e0bed7e5c252b5378b59cc013cfe 333 SUPERFAMILY SSF52540 47 310 5.11E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05765 7536e0bed7e5c252b5378b59cc013cfe 333 Gene3D G3DSA:3.40.50.300 12 331 1.7E-102 T 11-10-2018 APT56_05765 7536e0bed7e5c252b5378b59cc013cfe 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 305 2.1E-17 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_05765 7536e0bed7e5c252b5378b59cc013cfe 333 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05765 7536e0bed7e5c252b5378b59cc013cfe 333 Pfam PF00005 ABC transporter 39 188 1.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04325 1de8fca5557ba9cdc88fe33cc4c9f2fe 389 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 389 1.4E-122 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04325 1de8fca5557ba9cdc88fe33cc4c9f2fe 389 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04325 1de8fca5557ba9cdc88fe33cc4c9f2fe 389 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 387 23.553 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04325 1de8fca5557ba9cdc88fe33cc4c9f2fe 389 ProSitePatterns PS01348 MraY family signature 2. 212 223 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04325 1de8fca5557ba9cdc88fe33cc4c9f2fe 389 Pfam PF00953 Glycosyl transferase family 4 99 307 1.8E-34 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 APT56_04325 1de8fca5557ba9cdc88fe33cc4c9f2fe 389 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 2.6E-4 T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_00875 162658aada15576d8838ab4ab26ffe25 232 Gene3D G3DSA:3.40.109.10 1 227 1.2E-63 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT56_00875 162658aada15576d8838ab4ab26ffe25 232 Pfam PF00881 Nitroreductase family 20 207 6.4E-30 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT56_00875 162658aada15576d8838ab4ab26ffe25 232 SUPERFAMILY SSF55469 17 230 2.09E-43 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT56_15490 d66eb5ac23008436e40dba088b160056 493 Pfam PF02321 Outer membrane efflux protein 302 477 7.9E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_15490 d66eb5ac23008436e40dba088b160056 493 Pfam PF02321 Outer membrane efflux protein 76 269 3.6E-15 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_15490 d66eb5ac23008436e40dba088b160056 493 SUPERFAMILY SSF56954 5 484 4.58E-98 T 11-10-2018 APT56_15490 d66eb5ac23008436e40dba088b160056 493 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 479 2.2E-115 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_15490 d66eb5ac23008436e40dba088b160056 493 Gene3D G3DSA:1.20.1600.10 66 480 1.1E-111 T 11-10-2018 APT56_15490 d66eb5ac23008436e40dba088b160056 493 Gene3D G3DSA:2.20.200.10 114 368 1.1E-111 T 11-10-2018 APT56_19915 feb4a5577c72619bc406848d75fe9595 378 Pfam PF02563 Polysaccharide biosynthesis/export protein 79 176 1.2E-25 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 APT56_19915 feb4a5577c72619bc406848d75fe9595 378 Gene3D G3DSA:3.10.560.10 51 349 1.9E-102 T 11-10-2018 APT56_19915 feb4a5577c72619bc406848d75fe9595 378 Pfam PF10531 SLBB domain 183 233 3.9E-10 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_19915 feb4a5577c72619bc406848d75fe9595 378 Pfam PF10531 SLBB domain 267 313 2.4E-5 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_19915 feb4a5577c72619bc406848d75fe9595 378 Gene3D G3DSA:3.10.560.10 63 265 1.9E-102 T 11-10-2018 APT56_19915 feb4a5577c72619bc406848d75fe9595 378 Gene3D G3DSA:3.30.1950.10 86 180 1.9E-102 T 11-10-2018 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 SMART SM00065 286 433 8.7E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 SUPERFAMILY SSF55874 515 638 5.76E-17 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Pfam PF00672 HAMP domain 200 247 2.0E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Gene3D G3DSA:1.10.8.500 199 249 2.4E-5 T 11-10-2018 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Pfam PF07730 Histidine kinase 440 506 2.1E-13 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Pfam PF13185 GAF domain 286 424 7.0E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Gene3D G3DSA:3.30.565.10 508 639 5.7E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 PIRSF PIRSF003167 8 645 2.4E-188 T 11-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 SMART SM00387 546 641 1.6E-9 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 SMART SM00304 199 251 3.7E-15 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 SUPERFAMILY SSF55781 286 436 7.2E-20 T 11-10-2018 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Gene3D G3DSA:3.30.450.40 264 429 1.0E-24 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Gene3D G3DSA:1.20.120.960 51 170 1.1E-5 T 11-10-2018 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 554 639 3.1E-8 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 SUPERFAMILY SSF158472 200 249 2.62E-10 T 11-10-2018 APT56_12940 26b216ffc59b9b293b9ab5a3d5de65b5 645 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 44 153 1.4E-22 T 11-10-2018 IPR029095 NarX-like, N-terminal APT56_26185 c9d5c30280444f2e8d4413bdbc61c208 327 PIRSF PIRSF017082 1 326 6.9E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_26185 c9d5c30280444f2e8d4413bdbc61c208 327 Gene3D G3DSA:3.40.190.10 130 252 7.3E-102 T 11-10-2018 APT56_26185 c9d5c30280444f2e8d4413bdbc61c208 327 Gene3D G3DSA:3.40.190.150 32 317 7.3E-102 T 11-10-2018 APT56_26185 c9d5c30280444f2e8d4413bdbc61c208 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 323 1.4E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_26185 c9d5c30280444f2e8d4413bdbc61c208 327 SUPERFAMILY SSF53850 118 285 4.15E-11 T 11-10-2018 APT56_27235 4a7314872971c1e535d55edde5a9be55 179 Gene3D G3DSA:3.60.20.10 2 178 9.8E-66 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_27235 4a7314872971c1e535d55edde5a9be55 179 Pfam PF00227 Proteasome subunit 5 175 2.9E-21 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 APT56_27235 4a7314872971c1e535d55edde5a9be55 179 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 177 2.9E-84 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 APT56_27235 4a7314872971c1e535d55edde5a9be55 179 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 177 41.029 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 APT56_27235 4a7314872971c1e535d55edde5a9be55 179 PIRSF PIRSF039093 1 179 1.1E-85 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 APT56_27235 4a7314872971c1e535d55edde5a9be55 179 SUPERFAMILY SSF56235 3 177 3.46E-58 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_15805 4fdf6e4dfda7e619c4a4cd4e497bb254 497 PIRSF PIRSF012702 1 495 5.5E-161 T 11-10-2018 IPR009197 Microcystin LR degradation protein MlrC APT56_15805 4fdf6e4dfda7e619c4a4cd4e497bb254 497 Pfam PF07364 Metallopeptidase family M81 2 285 1.4E-90 T 11-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal APT56_15805 4fdf6e4dfda7e619c4a4cd4e497bb254 497 Pfam PF07171 MlrC C-terminus 298 479 1.6E-53 T 11-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal APT56_17710 9066ec18ce51841a34e2becfb2686678 399 Pfam PF00155 Aminotransferase class I and II 31 394 4.8E-79 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_17710 9066ec18ce51841a34e2becfb2686678 399 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 246 259 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APT56_17710 9066ec18ce51841a34e2becfb2686678 399 Gene3D G3DSA:3.40.640.10 63 303 2.1E-164 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_17710 9066ec18ce51841a34e2becfb2686678 399 Gene3D G3DSA:3.90.1150.10 8 395 2.1E-164 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_17710 9066ec18ce51841a34e2becfb2686678 399 SUPERFAMILY SSF53383 2 398 2.77E-121 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_17710 9066ec18ce51841a34e2becfb2686678 399 PRINTS PR00799 Aspartate aminotransferase signature 276 301 1.0E-39 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APT56_17710 9066ec18ce51841a34e2becfb2686678 399 PRINTS PR00799 Aspartate aminotransferase signature 209 221 1.0E-39 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APT56_17710 9066ec18ce51841a34e2becfb2686678 399 PRINTS PR00799 Aspartate aminotransferase signature 178 197 1.0E-39 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APT56_17710 9066ec18ce51841a34e2becfb2686678 399 PRINTS PR00799 Aspartate aminotransferase signature 344 362 1.0E-39 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 9.1E-33 T 11-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 273 8.0E-128 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 SUPERFAMILY SSF50249 3 124 2.16E-46 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 SMART SM01382 124 252 2.1E-87 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 Gene3D G3DSA:4.10.950.10 197 274 3.4E-35 T 11-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 PIRSF PIRSF002158 6 275 4.1E-101 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 SUPERFAMILY SSF50104 127 272 1.62E-60 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 SMART SM01383 42 118 1.8E-42 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 11-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 250 1.2E-55 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.167 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 Gene3D G3DSA:2.30.30.30 118 196 1.2E-31 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 APT56_27830 f9b48ac1ce508ea59c421d44fb0457aa 275 Gene3D G3DSA:2.40.50.140 1 114 3.0E-46 T 11-10-2018 APT56_22590 a853b6806140434e2c3eeb507cbf40c0 326 PIRSF PIRSF017082 1 325 1.1E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_22590 a853b6806140434e2c3eeb507cbf40c0 326 SUPERFAMILY SSF53850 117 288 6.03E-14 T 11-10-2018 APT56_22590 a853b6806140434e2c3eeb507cbf40c0 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 319 3.4E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_22590 a853b6806140434e2c3eeb507cbf40c0 326 Gene3D G3DSA:3.40.190.10 129 250 4.7E-117 T 11-10-2018 APT56_22590 a853b6806140434e2c3eeb507cbf40c0 326 Gene3D G3DSA:3.40.190.150 31 315 4.7E-117 T 11-10-2018 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 Pfam PF00364 Biotin-requiring enzyme 5 77 4.8E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 SUPERFAMILY SSF47005 114 153 1.44E-9 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 Gene3D G3DSA:2.40.50.100 1 105 8.0E-24 T 11-10-2018 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 5 409 5.7E-169 T 11-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 180 408 1.7E-79 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 SUPERFAMILY SSF51230 2 97 3.27E-26 T 11-10-2018 IPR011053 Single hybrid motif APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 Pfam PF02817 e3 binding domain 118 151 8.2E-12 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 SUPERFAMILY SSF52777 180 409 2.45E-87 T 11-10-2018 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 Gene3D G3DSA:4.10.320.10 118 156 5.0E-12 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APT56_07245 d48275b5ea4ad81c36fbf821b90f9855 410 Gene3D G3DSA:3.30.559.10 178 410 2.7E-93 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 APT56_02850 4089511d12d42d5ed1b4f6435bb2279b 232 Gene3D G3DSA:3.90.850.10 1 232 3.5E-85 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_02850 4089511d12d42d5ed1b4f6435bb2279b 232 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 27 231 3.9E-51 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_02850 4089511d12d42d5ed1b4f6435bb2279b 232 SUPERFAMILY SSF56529 22 231 1.83E-69 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_01195 c6e9c7f3f7824df1553f77e6c28485f4 134 Gene3D G3DSA:3.10.20.400 5 98 6.4E-40 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 APT56_01195 c6e9c7f3f7824df1553f77e6c28485f4 134 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 107 7.9E-36 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT56_01195 c6e9c7f3f7824df1553f77e6c28485f4 134 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 7 111 33.249 T 11-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT56_01195 c6e9c7f3f7824df1553f77e6c28485f4 134 SUPERFAMILY SSF141734 7 114 5.49E-48 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 APT56_01195 c6e9c7f3f7824df1553f77e6c28485f4 134 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 110 7.0E-25 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 Gene3D G3DSA:1.10.10.10 573 633 1.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 Gene3D G3DSA:1.10.10.2770 440 572 3.5E-27 T 11-10-2018 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 Pfam PF09106 Elongation factor SelB, winged helix 449 503 1.2E-15 T 11-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 SUPERFAMILY SSF50465 272 368 5.18E-18 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 632 5.2E-131 T 11-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 Pfam PF09107 Elongation factor SelB, winged helix 587 631 1.9E-18 T 11-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 SUPERFAMILY SSF46785 438 507 9.93E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 PRINTS PR00315 GTP-binding elongation factor signature 54 64 3.0E-5 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 PRINTS PR00315 GTP-binding elongation factor signature 2 15 3.0E-5 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 PRINTS PR00315 GTP-binding elongation factor signature 70 81 3.0E-5 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 SUPERFAMILY SSF52540 2 194 2.48E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 SUPERFAMILY SSF46785 578 633 3.67E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 SUPERFAMILY SSF50447 174 264 4.01E-17 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 SUPERFAMILY SSF46785 510 573 2.18E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 Gene3D G3DSA:2.40.30.10 176 290 1.1E-26 T 11-10-2018 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 Pfam PF00009 Elongation factor Tu GTP binding domain 2 130 3.4E-26 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01955 64f72706b7ca6dc95ecd5c16e5d9ab67 645 Gene3D G3DSA:3.40.50.300 13 175 5.4E-42 T 11-10-2018 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 431 209.065 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 SUPERFAMILY SSF52540 3 429 9.88E-174 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 Pfam PF00709 Adenylosuccinate synthetase 5 423 1.1E-173 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 Gene3D G3DSA:3.90.170.10 267 431 4.0E-64 T 11-10-2018 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 Gene3D G3DSA:3.40.440.10 6 249 2.6E-98 T 11-10-2018 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 Gene3D G3DSA:1.10.300.10 102 201 2.6E-98 T 11-10-2018 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 11-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 3.6E-174 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 11-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT56_09570 34f4df97927fb9ad27a3df8fadfd6447 431 SMART SM00788 4 424 3.1E-293 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APT56_01345 27dec49234d768aacb11f69e1439198a 192 Pfam PF02417 Chromate transporter 16 173 2.4E-28 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 Gene3D G3DSA:3.40.50.720 1 157 2.7E-60 T 11-10-2018 APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 5 322 1.7E-143 T 11-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 SUPERFAMILY SSF51735 5 158 1.79E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 PIRSF PIRSF000102 2 328 6.6E-64 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 Hamap MF_01517 Malate dehydrogenase [mdh]. 2 328 56.973 T 11-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 160 324 6.5E-31 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 SUPERFAMILY SSF56327 160 328 7.41E-60 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 Gene3D G3DSA:3.90.110.10 158 329 4.1E-61 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 APT56_07150 0c89ac9b15756851ac58a8091e12afdc 329 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 155 7.1E-38 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 Gene3D G3DSA:3.55.50.30 42 112 6.5E-26 T 11-10-2018 APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 158 824 3.0E-131 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 Pfam PF07715 TonB-dependent Receptor Plug Domain 157 257 8.2E-24 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 SUPERFAMILY SSF56935 120 825 1.71E-148 T 11-10-2018 APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 Pfam PF00593 TonB dependent receptor 330 824 1.4E-68 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 SMART SM00965 63 114 1.6E-12 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 Pfam PF07660 Secretin and TonB N terminus short domain 65 113 1.5E-7 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 Gene3D G3DSA:2.170.130.10 133 266 1.4E-40 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_07270 0021589f8a99c0a0a0ef016cfc34a00f 825 Gene3D G3DSA:2.40.170.20 267 825 1.7E-150 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_06510 1bcb95779f2db0800c4f79b2dc3764c5 244 SMART SM00448 10 121 9.0E-47 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_06510 1bcb95779f2db0800c4f79b2dc3764c5 244 Gene3D G3DSA:3.40.50.2300 2 131 2.3E-40 T 11-10-2018 APT56_06510 1bcb95779f2db0800c4f79b2dc3764c5 244 Pfam PF00072 Response regulator receiver domain 12 122 1.9E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_06510 1bcb95779f2db0800c4f79b2dc3764c5 244 SUPERFAMILY SSF46894 138 240 6.8E-28 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_06510 1bcb95779f2db0800c4f79b2dc3764c5 244 Gene3D G3DSA:1.10.10.10 136 243 2.5E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06510 1bcb95779f2db0800c4f79b2dc3764c5 244 SUPERFAMILY SSF52172 6 131 1.24E-43 T 11-10-2018 IPR011006 CheY-like superfamily APT56_06510 1bcb95779f2db0800c4f79b2dc3764c5 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 238 2.7E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_06510 1bcb95779f2db0800c4f79b2dc3764c5 244 SMART SM00862 162 238 1.7E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_22300 48d60d3b559e9770ae82d7fdcc9ab565 173 SMART SM01001 13 164 1.3E-88 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT56_22300 48d60d3b559e9770ae82d7fdcc9ab565 173 SUPERFAMILY SSF52255 14 169 8.89E-60 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 APT56_22300 48d60d3b559e9770ae82d7fdcc9ab565 173 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 15 168 29.935 T 11-10-2018 IPR033747 Class I PurE APT56_22300 48d60d3b559e9770ae82d7fdcc9ab565 173 PIRSF PIRSF001338 10 170 7.4E-61 T 11-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 APT56_22300 48d60d3b559e9770ae82d7fdcc9ab565 173 Gene3D G3DSA:3.40.50.7700 1 173 3.2E-68 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 APT56_22300 48d60d3b559e9770ae82d7fdcc9ab565 173 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 15 166 1.8E-58 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT56_22300 48d60d3b559e9770ae82d7fdcc9ab565 173 Pfam PF00731 AIR carboxylase 15 162 2.5E-57 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APT56_19400 959d23fc950f02dc757c3145d06b5163 885 Gene3D G3DSA:3.30.470.30 247 362 1.5E-47 T 11-10-2018 APT56_19400 959d23fc950f02dc757c3145d06b5163 885 SUPERFAMILY SSF50249 408 523 6.28E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_19400 959d23fc950f02dc757c3145d06b5163 885 Pfam PF13298 DNA polymerase Ligase (LigD) 36 140 6.8E-39 T 11-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain APT56_19400 959d23fc950f02dc757c3145d06b5163 885 Gene3D G3DSA:3.30.1490.70 235 403 1.5E-47 T 11-10-2018 APT56_19400 959d23fc950f02dc757c3145d06b5163 885 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 596 838 7.0E-83 T 11-10-2018 IPR014145 DNA ligase D, polymerase domain APT56_19400 959d23fc950f02dc757c3145d06b5163 885 Gene3D G3DSA:3.90.920.30 602 878 9.1E-97 T 11-10-2018 APT56_19400 959d23fc950f02dc757c3145d06b5163 885 SUPERFAMILY SSF56091 217 405 9.83E-47 T 11-10-2018 APT56_19400 959d23fc950f02dc757c3145d06b5163 885 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 222 522 5.1E-104 T 11-10-2018 IPR014146 DNA ligase D, ligase domain APT56_19400 959d23fc950f02dc757c3145d06b5163 885 Gene3D G3DSA:2.40.50.140 407 524 2.3E-36 T 11-10-2018 APT56_19400 959d23fc950f02dc757c3145d06b5163 885 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 237 866 1.8E-199 T 11-10-2018 IPR014143 DNA ligase D APT56_19400 959d23fc950f02dc757c3145d06b5163 885 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 5 160 3.3E-68 T 11-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain APT56_19400 959d23fc950f02dc757c3145d06b5163 885 Pfam PF01068 ATP dependent DNA ligase domain 232 405 4.5E-22 T 11-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 APT56_19400 959d23fc950f02dc757c3145d06b5163 885 Pfam PF04679 ATP dependent DNA ligase C terminal region 426 516 3.7E-24 T 11-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 APT56_10145 31020fbdbb6c23a5f7d20af8729733ec 527 Pfam PF17289 Terminase RNaseH-like domain 355 508 1.2E-15 T 11-10-2018 IPR035421 Terminase, large subunit gp17-like APT56_10145 31020fbdbb6c23a5f7d20af8729733ec 527 Gene3D G3DSA:3.40.50.300 11 227 4.7E-6 T 11-10-2018 APT56_10145 31020fbdbb6c23a5f7d20af8729733ec 527 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 366 512 6.1E-46 T 11-10-2018 IPR006517 Archaeophage PsiM2, terminase large subunit APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 38 430 4.7E-160 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 SUPERFAMILY SSF53720 30 431 5.3E-87 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 Gene3D G3DSA:3.40.50.1980 237 353 7.5E-127 T 11-10-2018 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 2 431 40.429 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 Pfam PF00815 Histidinol dehydrogenase 27 430 3.9E-167 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 Gene3D G3DSA:3.40.50.1980 35 235 7.5E-127 T 11-10-2018 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 233 265 - T 11-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PRINTS PR00083 Histidinol dehydrogenase signature 36 60 8.2E-81 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PRINTS PR00083 Histidinol dehydrogenase signature 255 274 8.2E-81 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PRINTS PR00083 Histidinol dehydrogenase signature 174 200 8.2E-81 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PRINTS PR00083 Histidinol dehydrogenase signature 140 166 8.2E-81 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PRINTS PR00083 Histidinol dehydrogenase signature 233 254 8.2E-81 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PRINTS PR00083 Histidinol dehydrogenase signature 365 383 8.2E-81 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PRINTS PR00083 Histidinol dehydrogenase signature 324 349 8.2E-81 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PRINTS PR00083 Histidinol dehydrogenase signature 204 229 8.2E-81 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_01225 4f1fb7f136bea843eb7eea3876e606b9 434 PIRSF PIRSF000099 5 433 1.1E-157 T 11-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 Gene3D G3DSA:1.10.8.60 326 392 1.3E-18 T 11-10-2018 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 SMART SM00448 14 125 1.4E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 Gene3D G3DSA:3.40.50.2300 11 139 1.6E-33 T 11-10-2018 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 SUPERFAMILY SSF46689 366 451 2.33E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 SUPERFAMILY SSF52540 155 385 2.27E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09175 d10e50995bdc1defedb446495f9e480e 460 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 241 256 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 179 192 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 Gene3D G3DSA:3.40.50.300 144 325 2.2E-58 T 11-10-2018 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 Pfam PF00072 Response regulator receiver domain 17 125 1.8E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 SUPERFAMILY SSF52172 13 200 3.84E-41 T 11-10-2018 IPR011006 CheY-like superfamily APT56_09175 d10e50995bdc1defedb446495f9e480e 460 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 368 377 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site APT56_09175 d10e50995bdc1defedb446495f9e480e 460 Pfam PF02954 Bacterial regulatory protein, Fis family 408 448 2.0E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 Pfam PF00158 Sigma-54 interaction domain 156 321 1.2E-65 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT56_09175 d10e50995bdc1defedb446495f9e480e 460 SMART SM00382 175 318 6.9E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09175 d10e50995bdc1defedb446495f9e480e 460 Gene3D G3DSA:1.10.10.60 394 455 7.5E-13 T 11-10-2018 APT56_10985 78fa8201e7ecf2c6d39f7a29a6336f1e 296 Pfam PF03466 LysR substrate binding domain 90 270 2.3E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_10985 78fa8201e7ecf2c6d39f7a29a6336f1e 296 SUPERFAMILY SSF46785 3 96 8.71E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10985 78fa8201e7ecf2c6d39f7a29a6336f1e 296 Gene3D G3DSA:3.40.190.10 165 266 1.6E-25 T 11-10-2018 APT56_10985 78fa8201e7ecf2c6d39f7a29a6336f1e 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.6E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10985 78fa8201e7ecf2c6d39f7a29a6336f1e 296 SUPERFAMILY SSF53850 90 276 4.03E-28 T 11-10-2018 APT56_10985 78fa8201e7ecf2c6d39f7a29a6336f1e 296 Gene3D G3DSA:1.10.10.10 1 89 2.2E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10985 78fa8201e7ecf2c6d39f7a29a6336f1e 296 Gene3D G3DSA:3.40.190.10 91 271 1.6E-25 T 11-10-2018 APT56_21755 13f6fecba21e201a3b0bc1a7ca5f1b03 181 SMART SM00554 70 181 9.2E-25 T 11-10-2018 IPR000782 FAS1 domain APT56_21755 13f6fecba21e201a3b0bc1a7ca5f1b03 181 Gene3D G3DSA:2.30.180.10 34 181 2.8E-44 T 11-10-2018 IPR036378 FAS1 domain superfamily APT56_21755 13f6fecba21e201a3b0bc1a7ca5f1b03 181 SUPERFAMILY SSF82153 35 180 1.44E-38 T 11-10-2018 IPR036378 FAS1 domain superfamily APT56_21755 13f6fecba21e201a3b0bc1a7ca5f1b03 181 Pfam PF02469 Fasciclin domain 46 180 4.0E-32 T 11-10-2018 IPR000782 FAS1 domain APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 Gene3D G3DSA:3.40.50.10380 1 160 3.0E-67 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 Pfam PF01515 Phosphate acetyl/butaryl transferase 429 755 1.9E-94 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 SMART SM00919 163 400 8.0E-136 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 1.1E-25 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 SMART SM01274 18 151 4.1E-76 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 SUPERFAMILY SSF53223 11 161 1.22E-50 T 11-10-2018 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 SUPERFAMILY SSF53659 429 758 3.33E-86 T 11-10-2018 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 Pfam PF03949 Malic enzyme, NAD binding domain 165 360 4.5E-20 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 PIRSF PIRSF036684 1 762 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 SUPERFAMILY SSF51735 163 438 9.44E-85 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 Gene3D G3DSA:3.40.50.720 161 442 2.4E-81 T 11-10-2018 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 Gene3D G3DSA:3.40.50.10950 446 758 1.8E-96 T 11-10-2018 APT56_22630 bf66b081eb632fe8b5f63a0c84554d14 762 Gene3D G3DSA:3.40.50.10750 577 731 1.8E-96 T 11-10-2018 APT56_23690 97943f3ef3706a0a1bd404cdda56c0bc 389 Gene3D G3DSA:1.20.1720.10 17 386 6.8E-59 T 11-10-2018 APT56_23690 97943f3ef3706a0a1bd404cdda56c0bc 389 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 4.2E-5 T 11-10-2018 APT56_23690 97943f3ef3706a0a1bd404cdda56c0bc 389 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 4.2E-5 T 11-10-2018 APT56_23690 97943f3ef3706a0a1bd404cdda56c0bc 389 PRINTS PR01036 Tetracycline resistance protein TetB signature 19 43 4.2E-5 T 11-10-2018 APT56_23690 97943f3ef3706a0a1bd404cdda56c0bc 389 Pfam PF07690 Major Facilitator Superfamily 29 350 1.7E-22 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_23690 97943f3ef3706a0a1bd404cdda56c0bc 389 SUPERFAMILY SSF103473 16 385 1.7E-32 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_22120 da60904fd3ef63b82c0fda471f8652d1 192 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 186 1.9E-53 T 11-10-2018 IPR006286 Deglycase PfpI APT56_22120 da60904fd3ef63b82c0fda471f8652d1 192 SUPERFAMILY SSF52317 1 186 4.87E-48 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_22120 da60904fd3ef63b82c0fda471f8652d1 192 Gene3D G3DSA:3.40.50.880 1 192 2.3E-51 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_22120 da60904fd3ef63b82c0fda471f8652d1 192 Pfam PF01965 DJ-1/PfpI family 3 184 1.1E-49 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 2.4E-20 T 11-10-2018 APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 SUPERFAMILY SSF54909 68 153 5.36E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 SMART SM00344 7 116 2.4E-49 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 Pfam PF01037 Lrp/AsnC ligand binding domain 73 147 8.0E-24 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 Gene3D G3DSA:3.30.70.920 60 144 3.2E-24 T 11-10-2018 APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 8.6E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 8.6E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 8.6E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 SUPERFAMILY SSF46785 7 66 5.71E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04065 e5d4f871bb21f616f4ea94fac68c01fc 156 Gene3D G3DSA:1.10.10.10 8 59 5.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_09425 20a0914fbca921910e310ad5871bb089 418 SUPERFAMILY SSF51905 1 413 1.01E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_09425 20a0914fbca921910e310ad5871bb089 418 Gene3D G3DSA:3.50.50.60 3 63 3.4E-10 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_09425 20a0914fbca921910e310ad5871bb089 418 Pfam PF01266 FAD dependent oxidoreductase 2 403 1.2E-66 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_09425 20a0914fbca921910e310ad5871bb089 418 Gene3D G3DSA:3.50.50.60 107 410 1.0E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_09425 20a0914fbca921910e310ad5871bb089 418 Gene3D G3DSA:3.30.9.10 134 367 1.0E-49 T 11-10-2018 APT56_09425 20a0914fbca921910e310ad5871bb089 418 SUPERFAMILY SSF54373 275 365 9.55E-16 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 Gene3D G3DSA:3.30.390.30 322 407 3.8E-17 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 Gene3D G3DSA:3.50.50.60 115 240 2.2E-99 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 Gene3D G3DSA:3.50.50.60 6 307 2.2E-99 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 1.3E-11 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.3E-11 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 1.3E-11 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 280 1.3E-11 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 302 3.5E-60 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 1.2E-20 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.2E-20 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 1.2E-20 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 1.2E-20 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.2E-20 T 11-10-2018 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 SUPERFAMILY SSF55424 315 405 2.75E-17 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 SUPERFAMILY SSF51905 6 192 3.12E-45 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 SUPERFAMILY SSF51905 146 308 2.23E-26 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13975 72ce3a20e48930d66f2121be19ccc8cb 408 Pfam PF14759 Reductase C-terminal 322 404 9.1E-20 T 11-10-2018 IPR028202 Reductase, C-terminal APT56_00685 353143446671a4672ed9521ad863d1cd 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 111 5.6E-29 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_00685 353143446671a4672ed9521ad863d1cd 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 216 1.2E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00685 353143446671a4672ed9521ad863d1cd 222 Gene3D G3DSA:1.10.3720.10 3 219 1.1E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00685 353143446671a4672ed9521ad863d1cd 222 SUPERFAMILY SSF161098 15 205 5.45E-41 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 Gene3D G3DSA:3.50.50.60 5 344 1.5E-108 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PIRSF PIRSF000350 1 474 1.7E-81 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 SUPERFAMILY SSF51905 1 347 1.38E-60 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 SUPERFAMILY SSF55424 352 473 5.5E-42 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 352 373 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 158 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 317 324 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 439 459 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 274 288 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 185 210 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 417 432 1.4E-75 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 5.3E-40 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 302 324 5.3E-40 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 5.3E-40 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 185 203 5.3E-40 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 273 289 5.3E-40 T 11-10-2018 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 Gene3D G3DSA:3.50.50.60 164 286 1.5E-108 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 356 465 1.8E-38 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 474 7.7E-160 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 Gene3D G3DSA:3.30.390.30 355 475 1.7E-46 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_07250 e6f0be93dad40f57111fbeb88d62a2e5 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 337 2.4E-67 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_16150 0b883fc1f370d33177158f1e0f1693ce 168 Gene3D G3DSA:2.60.40.4150 17 145 3.1E-31 T 11-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily APT56_16150 0b883fc1f370d33177158f1e0f1693ce 168 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 16 136 2.5E-28 T 11-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN APT56_16150 0b883fc1f370d33177158f1e0f1693ce 168 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 12 140 1.2E-26 T 11-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN APT56_15385 f7ec038277c8a33add8498ed8efabb6e 315 SUPERFAMILY SSF53474 19 311 1.46E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_15385 f7ec038277c8a33add8498ed8efabb6e 315 PIRSF PIRSF031982 1 315 6.9E-90 T 11-10-2018 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL APT56_15385 f7ec038277c8a33add8498ed8efabb6e 315 Pfam PF12146 Serine aminopeptidase, S33 70 180 4.2E-7 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 APT56_15385 f7ec038277c8a33add8498ed8efabb6e 315 Gene3D G3DSA:3.40.50.1820 31 315 4.8E-26 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_13855 ef66b8c46111c2d0676cc73ee89fc917 349 Pfam PF05235 CHAD domain 57 278 4.0E-28 T 11-10-2018 IPR007899 CHAD domain APT56_13855 ef66b8c46111c2d0676cc73ee89fc917 349 SMART SM00880 47 314 1.4E-20 T 11-10-2018 IPR007899 CHAD domain APT56_13855 ef66b8c46111c2d0676cc73ee89fc917 349 Gene3D G3DSA:1.40.20.10 54 344 8.7E-27 T 11-10-2018 IPR038186 CHAD domain superfamily APT56_25065 d5663773565e88f0171fb88a3b78ed50 298 Gene3D G3DSA:1.10.10.10 1 84 4.4E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25065 d5663773565e88f0171fb88a3b78ed50 298 Gene3D G3DSA:3.40.190.290 92 292 1.1E-44 T 11-10-2018 APT56_25065 d5663773565e88f0171fb88a3b78ed50 298 SUPERFAMILY SSF53850 91 291 3.26E-43 T 11-10-2018 APT56_25065 d5663773565e88f0171fb88a3b78ed50 298 Pfam PF03466 LysR substrate binding domain 90 290 1.5E-46 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_25065 d5663773565e88f0171fb88a3b78ed50 298 SUPERFAMILY SSF46785 2 113 3.63E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25065 d5663773565e88f0171fb88a3b78ed50 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 7.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_27435 bba1458776856b124572fde1b0030f44 595 Gene3D G3DSA:2.40.50.140 1 104 6.5E-32 T 11-10-2018 APT56_27435 bba1458776856b124572fde1b0030f44 595 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 590 33.525 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 APT56_27435 bba1458776856b124572fde1b0030f44 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.4E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_27435 bba1458776856b124572fde1b0030f44 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 480 496 1.4E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_27435 bba1458776856b124572fde1b0030f44 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 524 538 1.4E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_27435 bba1458776856b124572fde1b0030f44 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.4E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_27435 bba1458776856b124572fde1b0030f44 595 Gene3D G3DSA:3.30.1360.30 272 426 6.4E-195 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 APT56_27435 bba1458776856b124572fde1b0030f44 595 Gene3D G3DSA:3.30.930.10 117 588 6.4E-195 T 11-10-2018 APT56_27435 bba1458776856b124572fde1b0030f44 595 Pfam PF00152 tRNA synthetases class II (D, K and N) 118 564 4.9E-107 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_27435 bba1458776856b124572fde1b0030f44 595 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 588 1.2E-241 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 APT56_27435 bba1458776856b124572fde1b0030f44 595 Pfam PF02938 GAD domain 309 406 1.4E-27 T 11-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 APT56_27435 bba1458776856b124572fde1b0030f44 595 SUPERFAMILY SSF55261 291 416 1.8E-41 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 APT56_27435 bba1458776856b124572fde1b0030f44 595 Pfam PF01336 OB-fold nucleic acid binding domain 18 101 3.7E-17 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APT56_27435 bba1458776856b124572fde1b0030f44 595 SUPERFAMILY SSF55681 110 591 9.22E-103 T 11-10-2018 APT56_27435 bba1458776856b124572fde1b0030f44 595 SUPERFAMILY SSF50249 1 104 2.48E-31 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_21360 5bc81c8d00a23716b896109dc217ceca 157 Pfam PF13452 N-terminal half of MaoC dehydratase 21 144 2.0E-8 T 11-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 APT56_21360 5bc81c8d00a23716b896109dc217ceca 157 SUPERFAMILY SSF54637 14 156 1.6E-32 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_21360 5bc81c8d00a23716b896109dc217ceca 157 Gene3D G3DSA:3.10.129.10 10 156 5.5E-36 T 11-10-2018 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 ProSitePatterns PS00221 MIP family signature. 64 72 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 Hamap MF_01146 Aquaporin Z [aqpZ]. 5 233 34.985 T 11-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 SUPERFAMILY SSF81338 6 230 1.18E-67 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 Pfam PF00230 Major intrinsic protein 5 226 3.2E-51 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 PRINTS PR00783 Major intrinsic protein family signature 170 192 6.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 PRINTS PR00783 Major intrinsic protein family signature 6 25 6.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 PRINTS PR00783 Major intrinsic protein family signature 209 229 6.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 PRINTS PR00783 Major intrinsic protein family signature 83 102 6.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 PRINTS PR00783 Major intrinsic protein family signature 46 70 6.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 PRINTS PR00783 Major intrinsic protein family signature 140 158 6.1E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 TIGRFAM TIGR00861 MIP: MIP family channel proteins 10 226 3.7E-61 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APT56_17850 6d31b1726c6c90e10b68102f624e5687 236 Gene3D G3DSA:1.20.1080.10 3 232 9.7E-87 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APT56_20005 2f29512b05289efb9f46063a4d579cc9 782 Gene3D G3DSA:2.40.110.10 197 320 5.5E-99 T 11-10-2018 APT56_20005 2f29512b05289efb9f46063a4d579cc9 782 SUPERFAMILY SSF47203 321 468 1.01E-24 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_20005 2f29512b05289efb9f46063a4d579cc9 782 Gene3D G3DSA:1.10.540.10 83 196 5.5E-99 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_20005 2f29512b05289efb9f46063a4d579cc9 782 SUPERFAMILY SSF56645 81 316 1.09E-46 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_20005 2f29512b05289efb9f46063a4d579cc9 782 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 87 194 5.2E-20 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_20005 2f29512b05289efb9f46063a4d579cc9 782 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 321 468 3.1E-13 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_20005 2f29512b05289efb9f46063a4d579cc9 782 Pfam PF09317 Domain of unknown function (DUF1974) 475 763 6.8E-115 T 11-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 APT56_20005 2f29512b05289efb9f46063a4d579cc9 782 Gene3D G3DSA:1.20.140.10 321 468 5.5E-99 T 11-10-2018 APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 Gene3D G3DSA:3.30.70.20 449 543 3.9E-39 T 11-10-2018 APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 SUPERFAMILY SSF54862 448 546 2.86E-27 T 11-10-2018 APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 SUPERFAMILY SSF54373 212 306 1.69E-37 T 11-10-2018 APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 5.0E-7 T 11-10-2018 APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 179 194 5.0E-7 T 11-10-2018 APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 SUPERFAMILY SSF51905 3 446 3.5E-59 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 Gene3D G3DSA:3.30.9.90 80 448 4.5E-201 T 11-10-2018 APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 Pfam PF13450 NAD(P)-binding Rossmann-like domain 13 58 5.7E-6 T 11-10-2018 APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 Gene3D G3DSA:3.50.50.60 8 385 4.5E-201 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_06985 23c40ed5efbc8d4ff005ff4b9fe1cc66 548 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 444 546 5.6E-50 T 11-10-2018 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 Pfam PF12729 Four helix bundle sensory module for signal transduction 13 189 1.3E-12 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 334 489 3.1E-51 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 295 324 2.8E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 372 399 2.8E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 2.8E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 449 478 2.8E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 Pfam PF00672 HAMP domain 221 268 8.7E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 Gene3D G3DSA:1.10.287.950 221 523 1.3E-89 T 11-10-2018 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 SMART SM00304 221 273 1.5E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 SUPERFAMILY SSF58104 241 523 6.15E-73 T 11-10-2018 APT56_18225 7899fb6ab204ef912d0f5b0c24d09cbb 575 SMART SM00283 274 521 7.4E-87 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 Gene3D G3DSA:2.160.20.20 1142 1314 2.7E-28 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 SUPERFAMILY SSF51126 1129 1269 1.22E-5 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 Gene3D G3DSA:2.40.10.120 65 352 3.5E-75 T 11-10-2018 APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1412 1768 5.1E-22 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 SUPERFAMILY SSF51126 455 1131 9.1E-46 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 SUPERFAMILY SSF103515 1490 1768 1.31E-22 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 SMART SM00869 1506 1757 2.6E-8 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 PRINTS PR00921 IgA-specific serine endopeptidase (S6) signature 174 194 6.1E-18 T 11-10-2018 IPR000710 Peptidase S6, IgA endopeptidase GO:0004252|GO:0006508 APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 PRINTS PR00921 IgA-specific serine endopeptidase (S6) signature 299 317 6.1E-18 T 11-10-2018 IPR000710 Peptidase S6, IgA endopeptidase GO:0004252|GO:0006508 APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 PRINTS PR00921 IgA-specific serine endopeptidase (S6) signature 708 730 6.1E-18 T 11-10-2018 IPR000710 Peptidase S6, IgA endopeptidase GO:0004252|GO:0006508 APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 PRINTS PR00921 IgA-specific serine endopeptidase (S6) signature 72 92 6.1E-18 T 11-10-2018 IPR000710 Peptidase S6, IgA endopeptidase GO:0004252|GO:0006508 APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 Pfam PF02395 Immunoglobulin A1 protease 62 784 1.2E-104 T 11-10-2018 IPR000710 Peptidase S6, IgA endopeptidase GO:0004252|GO:0006508 APT56_12660 e4a364302c3eea57571ed9ba13d89e70 1768 Gene3D G3DSA:2.40.128.130 1461 1768 8.8E-41 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 Gene3D G3DSA:3.50.50.60 14 288 8.7E-83 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 SUPERFAMILY SSF51905 155 313 9.72E-24 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 565 627 6.1E-11 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 Gene3D G3DSA:3.30.413.10 636 789 4.4E-33 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 Gene3D G3DSA:1.10.10.1100 427 481 9.8E-9 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00397 Sirohaem Fe-binding site signature 641 659 6.5E-7 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00397 Sirohaem Fe-binding site signature 684 702 6.5E-7 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 Gene3D G3DSA:3.50.50.60 116 251 8.7E-83 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 SUPERFAMILY SSF56014 638 813 1.44E-49 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 2.1E-14 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 2.1E-14 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 2.1E-14 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 2.1E-14 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 291 2.3E-47 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 Pfam PF04324 BFD-like [2Fe-2S] binding domain 427 475 3.0E-7 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 1.9E-11 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 1.9E-11 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 1.9E-11 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 281 288 1.9E-11 T 11-10-2018 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 637 758 1.4E-18 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 SUPERFAMILY SSF55124 517 646 3.11E-26 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 684 700 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 PIRSF PIRSF037149 5 840 0.0 T 11-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 SUPERFAMILY SSF51905 6 195 2.65E-40 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_23760 9e5a8a7af9dcc2394d6f854e31aa6aed 850 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 13 805 0.0 T 11-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 APT56_12540 35abc2bc589ba7aef4025975f0819f4c 533 Pfam PF08811 Protein of unknown function (DUF1800) 59 532 2.9E-135 T 11-10-2018 IPR014917 Protein of unknown function DUF1800 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 47 512 32.136 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 SUPERFAMILY SSF53697 42 540 8.49E-144 T 11-10-2018 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 250 268 1.8E-41 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 485 498 1.8E-41 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 327 348 1.8E-41 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 453 471 1.8E-41 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 471 485 1.8E-41 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 141 160 1.8E-41 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 485 502 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 Gene3D G3DSA:1.10.1390.10 495 541 1.3E-14 T 11-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 Gene3D G3DSA:3.40.50.10490 44 494 2.5E-155 T 11-10-2018 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 Gene3D G3DSA:3.40.50.10490 99 280 2.5E-155 T 11-10-2018 APT56_19900 f9428b5ad5a169919f2ed3bc1138a2a6 557 Pfam PF00342 Phosphoglucose isomerase 66 530 2.2E-134 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_00640 f048809e9716d54de60c489b97852c3b 883 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 330 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 APT56_00640 f048809e9716d54de60c489b97852c3b 883 Pfam PF01131 DNA topoisomerase 155 598 2.4E-111 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 Gene3D G3DSA:1.10.460.10 159 608 1.3E-158 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 APT56_00640 f048809e9716d54de60c489b97852c3b 883 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 321 330 6.1E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 190 208 6.1E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 408 424 6.1E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 523 537 6.1E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 6.1E-26 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 SUPERFAMILY SSF56712 3 613 2.49E-167 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain APT56_00640 f048809e9716d54de60c489b97852c3b 883 Pfam PF01751 Toprim domain 4 131 2.2E-12 T 11-10-2018 IPR006171 TOPRIM domain APT56_00640 f048809e9716d54de60c489b97852c3b 883 SMART SM00436 125 220 1.6E-22 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 Gene3D G3DSA:2.70.20.10 214 491 1.3E-158 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 APT56_00640 f048809e9716d54de60c489b97852c3b 883 SMART SM00437 278 560 4.9E-74 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 Gene3D G3DSA:3.40.50.140 3 152 6.4E-42 T 11-10-2018 APT56_00640 f048809e9716d54de60c489b97852c3b 883 Gene3D G3DSA:1.10.290.10 287 422 1.3E-158 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 APT56_00640 f048809e9716d54de60c489b97852c3b 883 TIGRFAM TIGR01056 topB: DNA topoisomerase III 3 619 5.9E-168 T 11-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 APT56_00640 f048809e9716d54de60c489b97852c3b 883 SMART SM00493 3 125 1.4E-16 T 11-10-2018 IPR006171 TOPRIM domain APT56_00640 f048809e9716d54de60c489b97852c3b 883 Pfam PF13342 C-terminal repeat of topoisomerase 649 708 3.9E-21 T 11-10-2018 IPR025589 Topoisomerase C-terminal repeat APT56_00640 f048809e9716d54de60c489b97852c3b 883 Pfam PF13342 C-terminal repeat of topoisomerase 754 814 1.4E-19 T 11-10-2018 IPR025589 Topoisomerase C-terminal repeat APT56_09580 6d383598a056f513052a39578b6d37ff 70 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 11-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_09580 6d383598a056f513052a39578b6d37ff 70 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 4.0E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09580 6d383598a056f513052a39578b6d37ff 70 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 4.0E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09580 6d383598a056f513052a39578b6d37ff 70 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 4.0E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09580 6d383598a056f513052a39578b6d37ff 70 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 4.0E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09580 6d383598a056f513052a39578b6d37ff 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 57 1.0E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09580 6d383598a056f513052a39578b6d37ff 70 Pfam PF01165 Ribosomal protein S21 4 57 7.6E-21 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09580 6d383598a056f513052a39578b6d37ff 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 3.0E-23 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09580 6d383598a056f513052a39578b6d37ff 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 19.94 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09580 6d383598a056f513052a39578b6d37ff 70 Gene3D G3DSA:1.20.5.1150 16 54 8.9E-20 T 11-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 SUPERFAMILY SSF55186 550 708 1.09E-48 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Gene3D G3DSA:3.30.930.10 1 248 1.3E-119 T 11-10-2018 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Pfam PF02272 DHHA1 domain 731 870 3.0E-24 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 SUPERFAMILY SSF55681 2 251 3.23E-108 T 11-10-2018 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 278 294 5.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 205 216 5.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 5.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 302 315 5.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 232 245 5.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 203.512 T 11-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 SMART SM00863 651 693 1.1E-20 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Gene3D G3DSA:3.30.980.10 560 694 1.0E-49 T 11-10-2018 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Pfam PF01411 tRNA synthetases class II (A) 5 552 8.6E-224 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 693 3.3E-17 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Gene3D G3DSA:3.10.310.40 762 871 3.9E-29 T 11-10-2018 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Gene3D G3DSA:3.30.54.20 622 674 1.0E-49 T 11-10-2018 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 Gene3D G3DSA:2.40.30.130 457 550 2.1E-9 T 11-10-2018 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 SUPERFAMILY SSF50447 451 550 8.92E-19 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 853 0.0 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APT56_09440 221a6596759a5888ac951e2d8ccd9b38 874 SUPERFAMILY SSF101353 252 442 1.14E-59 T 11-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 17 555 1.2E-120 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 Pfam PF01514 Secretory protein of YscJ/FliF family 33 222 1.4E-76 T 11-10-2018 IPR006182 Secretory protein YscJ/FliF APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 PRINTS PR01009 Flagellar M-ring protein signature 123 141 8.0E-41 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 PRINTS PR01009 Flagellar M-ring protein signature 155 169 8.0E-41 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 PRINTS PR01009 Flagellar M-ring protein signature 375 399 8.0E-41 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 PRINTS PR01009 Flagellar M-ring protein signature 267 285 8.0E-41 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 PRINTS PR01009 Flagellar M-ring protein signature 198 216 8.0E-41 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 Gene3D G3DSA:3.30.300.30 122 225 4.0E-13 T 11-10-2018 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 PIRSF PIRSF004862 2 557 4.4E-153 T 11-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 APT56_12120 9e6d5f1d3daad4672d657b2a3b1a57e9 557 Pfam PF08345 Flagellar M-ring protein C-terminal 254 447 4.8E-48 T 11-10-2018 IPR013556 Flagellar M-ring C-terminal APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SMART SM00086 334 374 0.0035 T 11-10-2018 IPR001610 PAC motif APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 262 381 1.8E-10 T 11-10-2018 IPR000014 PAS domain APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 260 3.3E-9 T 11-10-2018 IPR000014 PAS domain APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SUPERFAMILY SSF55785 24 143 7.96E-6 T 11-10-2018 IPR035965 PAS domain superfamily APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 Pfam PF13426 PAS domain 24 134 0.0082 T 11-10-2018 IPR000014 PAS domain APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 Pfam PF13426 PAS domain 159 250 8.6E-6 T 11-10-2018 IPR000014 PAS domain APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 Pfam PF13426 PAS domain 277 373 1.4E-6 T 11-10-2018 IPR000014 PAS domain APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 Gene3D G3DSA:3.30.450.20 10 147 2.7E-8 T 11-10-2018 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 Gene3D G3DSA:3.30.450.20 148 268 1.9E-15 T 11-10-2018 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 Gene3D G3DSA:3.30.450.20 269 374 1.2E-10 T 11-10-2018 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SMART SM00091 140 210 0.39 T 11-10-2018 IPR000014 PAS domain APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SMART SM00091 13 74 4.1 T 11-10-2018 IPR000014 PAS domain APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SMART SM00091 265 331 4.3 T 11-10-2018 IPR000014 PAS domain APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 452 464 1.3E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 422 436 1.3E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 436 452 1.3E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SUPERFAMILY SSF46894 411 482 2.41E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SMART SM00421 419 476 3.4E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 Gene3D G3DSA:1.10.10.10 375 492 8.6E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SUPERFAMILY SSF55785 160 261 3.66E-13 T 11-10-2018 IPR035965 PAS domain superfamily APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 Pfam PF00196 Bacterial regulatory proteins, luxR family 421 476 1.5E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_22825 7bfcb1c61c3ab62b6aad424e3c8b18ea 496 SUPERFAMILY SSF55785 252 372 1.92E-16 T 11-10-2018 IPR035965 PAS domain superfamily APT56_01255 c31d3c4f9f4dbc3f3d65986c57ce5363 209 PIRSF PIRSF004649 8 209 1.0E-49 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC APT56_01255 c31d3c4f9f4dbc3f3d65986c57ce5363 209 Gene3D G3DSA:3.10.450.50 43 179 2.5E-57 T 11-10-2018 APT56_01255 c31d3c4f9f4dbc3f3d65986c57ce5363 209 Pfam PF05494 MlaC protein 43 206 3.5E-56 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC APT56_01255 c31d3c4f9f4dbc3f3d65986c57ce5363 209 Gene3D G3DSA:1.10.10.640 79 204 2.5E-57 T 11-10-2018 APT56_07700 53392740ef322bb595c5e444881e4534 432 Gene3D G3DSA:2.40.30.10 326 431 2.3E-31 T 11-10-2018 APT56_07700 53392740ef322bb595c5e444881e4534 432 PRINTS PR00315 GTP-binding elongation factor signature 18 31 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07700 53392740ef322bb595c5e444881e4534 432 PRINTS PR00315 GTP-binding elongation factor signature 155 164 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07700 53392740ef322bb595c5e444881e4534 432 PRINTS PR00315 GTP-binding elongation factor signature 78 86 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07700 53392740ef322bb595c5e444881e4534 432 PRINTS PR00315 GTP-binding elongation factor signature 98 108 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07700 53392740ef322bb595c5e444881e4534 432 PRINTS PR00315 GTP-binding elongation factor signature 114 125 1.1E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07700 53392740ef322bb595c5e444881e4534 432 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 71 86 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_07700 53392740ef322bb595c5e444881e4534 432 Gene3D G3DSA:2.40.30.10 234 323 1.0E-24 T 11-10-2018 APT56_07700 53392740ef322bb595c5e444881e4534 432 SUPERFAMILY SSF50447 235 323 6.45E-22 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_07700 53392740ef322bb595c5e444881e4534 432 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 17 431 5.9E-164 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 APT56_07700 53392740ef322bb595c5e444881e4534 432 Pfam PF00009 Elongation factor Tu GTP binding domain 17 205 1.2E-37 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07700 53392740ef322bb595c5e444881e4534 432 SUPERFAMILY SSF50465 327 431 1.77E-27 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APT56_07700 53392740ef322bb595c5e444881e4534 432 SUPERFAMILY SSF52540 16 244 1.59E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07700 53392740ef322bb595c5e444881e4534 432 Gene3D G3DSA:3.40.50.300 9 229 3.9E-61 T 11-10-2018 APT56_01840 a5b7dbb42fe8cdb07ddc56005bacb1d3 456 Gene3D G3DSA:3.20.20.30 2 456 3.9E-150 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_01840 a5b7dbb42fe8cdb07ddc56005bacb1d3 456 Pfam PF00296 Luciferase-like monooxygenase 27 386 8.1E-59 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT56_01840 a5b7dbb42fe8cdb07ddc56005bacb1d3 456 SUPERFAMILY SSF51679 3 437 7.85E-126 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_01840 a5b7dbb42fe8cdb07ddc56005bacb1d3 456 PIRSF PIRSF000337 3 446 2.6E-146 T 11-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 APT56_01840 a5b7dbb42fe8cdb07ddc56005bacb1d3 456 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 8 433 1.1E-170 T 11-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 SMART SM00930 272 347 1.1E-17 T 11-10-2018 IPR018449 NIL domain APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 SUPERFAMILY SSF55021 267 349 4.81E-14 T 11-10-2018 APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 SUPERFAMILY SSF52540 1 239 2.73E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 Gene3D G3DSA:3.40.50.300 1 244 1.1E-79 T 11-10-2018 APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 Pfam PF00005 ABC transporter 21 169 8.2E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 Gene3D G3DSA:3.30.70.260 256 353 3.2E-13 T 11-10-2018 APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 Pfam PF09383 NIL domain 274 346 6.5E-15 T 11-10-2018 IPR018449 NIL domain APT56_04480 7a31d93891d3a46cb5a793bce91a60bb 362 SMART SM00382 30 218 3.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09335 3b94b94e501c58053105c916179ad106 419 SUPERFAMILY SSF68912 1 46 8.24E-12 T 11-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily APT56_09335 3b94b94e501c58053105c916179ad106 419 SMART SM00382 170 337 9.8E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09335 3b94b94e501c58053105c916179ad106 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 418 9.4E-208 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 APT56_09335 3b94b94e501c58053105c916179ad106 419 Gene3D G3DSA:2.40.50.140 47 123 3.7E-33 T 11-10-2018 APT56_09335 3b94b94e501c58053105c916179ad106 419 Gene3D G3DSA:3.40.50.300 130 417 3.1E-126 T 11-10-2018 APT56_09335 3b94b94e501c58053105c916179ad106 419 SMART SM00357 52 118 5.7E-17 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APT56_09335 3b94b94e501c58053105c916179ad106 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 241.599 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 APT56_09335 3b94b94e501c58053105c916179ad106 419 SMART SM00959 5 47 4.3E-17 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 APT56_09335 3b94b94e501c58053105c916179ad106 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.9E-23 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_09335 3b94b94e501c58053105c916179ad106 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 8.0E-31 T 11-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 APT56_09335 3b94b94e501c58053105c916179ad106 419 Gene3D G3DSA:1.10.720.10 1 46 1.2E-18 T 11-10-2018 APT56_09335 3b94b94e501c58053105c916179ad106 419 SUPERFAMILY SSF50249 49 125 6.28E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_09335 3b94b94e501c58053105c916179ad106 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 6.4E-16 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 APT56_09335 3b94b94e501c58053105c916179ad106 419 SUPERFAMILY SSF52540 90 371 9.09E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11005 efdee14911805dddca6729e5102f262f 345 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 3 118 1.7E-24 T 11-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI APT56_11005 efdee14911805dddca6729e5102f262f 345 Gene3D G3DSA:1.25.40.10 193 283 1.1E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_11005 efdee14911805dddca6729e5102f262f 345 SUPERFAMILY SSF48452 153 260 3.79E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_06775 2fb62b436fc3f8eeb6549c618173eff6 355 Pfam PF02504 Fatty acid synthesis protein 2 322 5.8E-108 T 11-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 APT56_06775 2fb62b436fc3f8eeb6549c618173eff6 355 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 2 338 2.2E-115 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APT56_06775 2fb62b436fc3f8eeb6549c618173eff6 355 SUPERFAMILY SSF53659 2 333 3.21E-106 T 11-10-2018 APT56_06775 2fb62b436fc3f8eeb6549c618173eff6 355 Gene3D G3DSA:3.40.718.10 1 345 3.2E-129 T 11-10-2018 APT56_06775 2fb62b436fc3f8eeb6549c618173eff6 355 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 338 155.055 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APT56_06775 2fb62b436fc3f8eeb6549c618173eff6 355 PIRSF PIRSF002465 1 338 1.2E-132 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APT56_09895 3c103f750c00e8d7b3628855393a3d2a 352 Gene3D G3DSA:3.40.800.20 1 352 1.7E-109 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_09895 3c103f750c00e8d7b3628855393a3d2a 352 PRINTS PR01270 Histone deacetylase superfamily signature 166 189 1.1E-14 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_09895 3c103f750c00e8d7b3628855393a3d2a 352 PRINTS PR01270 Histone deacetylase superfamily signature 284 294 1.1E-14 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_09895 3c103f750c00e8d7b3628855393a3d2a 352 PRINTS PR01270 Histone deacetylase superfamily signature 198 213 1.1E-14 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_09895 3c103f750c00e8d7b3628855393a3d2a 352 Pfam PF00850 Histone deacetylase domain 48 347 6.3E-63 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_09895 3c103f750c00e8d7b3628855393a3d2a 352 SUPERFAMILY SSF52768 4 350 2.01E-82 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily APT56_23835 19441687f066d02d228b2362433d8be5 201 Gene3D G3DSA:3.90.226.10 1 199 1.6E-81 T 11-10-2018 APT56_23835 19441687f066d02d228b2362433d8be5 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 7 197 39.886 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_23835 19441687f066d02d228b2362433d8be5 201 PRINTS PR00127 Clp protease catalytic subunit P signature 115 134 6.6E-46 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_23835 19441687f066d02d228b2362433d8be5 201 PRINTS PR00127 Clp protease catalytic subunit P signature 23 38 6.6E-46 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_23835 19441687f066d02d228b2362433d8be5 201 PRINTS PR00127 Clp protease catalytic subunit P signature 63 83 6.6E-46 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_23835 19441687f066d02d228b2362433d8be5 201 PRINTS PR00127 Clp protease catalytic subunit P signature 94 111 6.6E-46 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_23835 19441687f066d02d228b2362433d8be5 201 PRINTS PR00127 Clp protease catalytic subunit P signature 172 191 6.6E-46 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_23835 19441687f066d02d228b2362433d8be5 201 Pfam PF00574 Clp protease 17 196 7.6E-79 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APT56_23835 19441687f066d02d228b2362433d8be5 201 SUPERFAMILY SSF52096 15 198 1.38E-69 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_15685 a53b66d05115388487d3d8b6e9d7793b 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 223 5.4E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_15685 a53b66d05115388487d3d8b6e9d7793b 229 SUPERFAMILY SSF161098 21 223 3.01E-45 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15685 a53b66d05115388487d3d8b6e9d7793b 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 23 116 1.2E-23 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_15685 a53b66d05115388487d3d8b6e9d7793b 229 Gene3D G3DSA:1.10.3720.10 16 227 3.2E-52 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24610 31c2778bfc26385fea2e8b2616668612 237 Gene3D G3DSA:1.10.10.10 133 234 2.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24610 31c2778bfc26385fea2e8b2616668612 237 SMART SM00862 157 230 3.4E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_24610 31c2778bfc26385fea2e8b2616668612 237 SMART SM00448 11 123 1.1E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24610 31c2778bfc26385fea2e8b2616668612 237 SUPERFAMILY SSF46894 139 231 4.25E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_24610 31c2778bfc26385fea2e8b2616668612 237 Gene3D G3DSA:3.40.50.2300 2 132 1.2E-30 T 11-10-2018 APT56_24610 31c2778bfc26385fea2e8b2616668612 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 230 1.3E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_24610 31c2778bfc26385fea2e8b2616668612 237 Pfam PF00072 Response regulator receiver domain 13 121 4.6E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24610 31c2778bfc26385fea2e8b2616668612 237 SUPERFAMILY SSF52172 8 131 6.4E-34 T 11-10-2018 IPR011006 CheY-like superfamily APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Gene3D G3DSA:3.30.70.1430 560 653 1.1E-296 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 SUPERFAMILY SSF82693 669 837 3.4E-9 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Gene3D G3DSA:3.30.70.1440 654 852 1.1E-296 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 SUPERFAMILY SSF82866 815 1015 3.14E-41 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Gene3D G3DSA:3.30.2090.10 705 793 1.1E-296 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Gene3D G3DSA:3.30.2090.10 179 269 1.1E-296 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Pfam PF00873 AcrB/AcrD/AcrF family 7 1013 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 609 623 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.1E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 SUPERFAMILY SSF82693 558 654 1.15E-15 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Gene3D G3DSA:3.30.70.1320 135 326 1.1E-296 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 SUPERFAMILY SSF82714 183 266 4.97E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Gene3D G3DSA:1.20.1640.10 10 505 1.1E-296 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 SUPERFAMILY SSF82714 707 789 1.57E-14 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 SUPERFAMILY SSF82693 40 134 4.19E-23 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Gene3D G3DSA:3.30.70.1430 40 801 1.1E-296 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 SUPERFAMILY SSF82866 290 490 7.32E-49 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 SUPERFAMILY SSF82693 136 324 2.96E-21 T 11-10-2018 APT56_02930 0417b301ecf0d531ddabe55991be78b8 1036 Gene3D G3DSA:1.20.1640.10 506 1010 1.1E-296 T 11-10-2018 APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 193 367 3.4E-36 T 11-10-2018 IPR000160 GGDEF domain APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 Gene3D G3DSA:3.30.450.40 16 183 1.5E-15 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 SUPERFAMILY SSF55073 199 368 2.43E-34 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 SMART SM00065 38 184 0.0013 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 Pfam PF13492 GAF domain 46 176 9.3E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 SMART SM00267 183 372 5.5E-35 T 11-10-2018 IPR000160 GGDEF domain APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 Gene3D G3DSA:3.30.70.270 184 371 3.2E-43 T 11-10-2018 APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 Pfam PF00990 Diguanylate cyclase, GGDEF domain 194 366 3.0E-33 T 11-10-2018 IPR000160 GGDEF domain APT56_23820 f5086c1aa9913fd03257fbf771c0a078 372 SUPERFAMILY SSF55781 39 187 2.62E-16 T 11-10-2018 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 Gene3D G3DSA:1.10.8.540 507 595 1.2E-30 T 11-10-2018 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 Pfam PF00771 FHIPEP family 26 687 1.0E-237 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 14 695 3.0E-288 T 11-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 Gene3D G3DSA:1.10.490.80 597 695 2.7E-35 T 11-10-2018 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 232 246 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 70 89 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 151 169 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 181 198 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 132 148 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 33 46 1.0E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 PIRSF PIRSF005419 1 697 6.6E-259 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 137 160 - T 11-10-2018 IPR025505 FHIPEP conserved site APT56_03665 e2468d618d8c3ccffe7c0deed28b0c98 697 Gene3D G3DSA:3.40.30.60 361 506 2.6E-32 T 11-10-2018 APT56_27260 22dffdd9a68ee265594fe9db1d97d55b 270 Gene3D G3DSA:3.40.50.2300 102 230 4.0E-39 T 11-10-2018 APT56_27260 22dffdd9a68ee265594fe9db1d97d55b 270 Gene3D G3DSA:3.40.50.2300 58 258 4.0E-39 T 11-10-2018 APT56_27260 22dffdd9a68ee265594fe9db1d97d55b 270 Pfam PF13377 Periplasmic binding protein-like domain 111 270 2.4E-27 T 11-10-2018 APT56_27260 22dffdd9a68ee265594fe9db1d97d55b 270 SUPERFAMILY SSF53822 10 261 1.91E-37 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_13370 65facfd6224ca0406cf3848694918472 724 Pfam PF07715 TonB-dependent Receptor Plug Domain 73 173 1.3E-15 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_13370 65facfd6224ca0406cf3848694918472 724 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 75 723 9.6E-101 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_13370 65facfd6224ca0406cf3848694918472 724 Gene3D G3DSA:2.40.170.20 183 724 5.1E-203 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_13370 65facfd6224ca0406cf3848694918472 724 Gene3D G3DSA:2.170.130.10 50 182 5.2E-39 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_13370 65facfd6224ca0406cf3848694918472 724 SUPERFAMILY SSF56935 28 723 7.53E-124 T 11-10-2018 APT56_13370 65facfd6224ca0406cf3848694918472 724 Pfam PF00593 TonB dependent receptor 264 722 9.4E-53 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_17155 4bee0a72f0012932c1f76d625f2e3867 264 Pfam PF12697 Alpha/beta hydrolase family 35 250 2.2E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_17155 4bee0a72f0012932c1f76d625f2e3867 264 Gene3D G3DSA:3.40.50.1820 3 259 3.8E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_17155 4bee0a72f0012932c1f76d625f2e3867 264 SUPERFAMILY SSF53474 8 259 1.91E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 SUPERFAMILY SSF53850 90 295 9.31E-36 T 11-10-2018 APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 Pfam PF03466 LysR substrate binding domain 90 284 1.2E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 Gene3D G3DSA:3.40.190.10 164 267 1.9E-26 T 11-10-2018 APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.9E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.9E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.9E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 Gene3D G3DSA:1.10.10.10 1 89 2.3E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 Gene3D G3DSA:3.40.190.10 91 274 1.9E-26 T 11-10-2018 APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 SUPERFAMILY SSF46785 1 110 5.54E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15020 5ac901948c39cb9c6343f54c9cd52157 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.3E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SMART SM00052 616 862 2.5E-108 T 11-10-2018 IPR001633 EAL domain APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SUPERFAMILY SSF55781 295 446 1.35E-23 T 11-10-2018 APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SUPERFAMILY SSF141868 622 869 2.35E-82 T 11-10-2018 IPR035919 EAL domain superfamily APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SMART SM00065 292 443 2.4E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Gene3D G3DSA:3.30.70.270 443 618 9.5E-63 T 11-10-2018 APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SMART SM00267 435 606 1.0E-71 T 11-10-2018 IPR000160 GGDEF domain APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Gene3D G3DSA:3.20.20.450 619 870 6.8E-93 T 11-10-2018 IPR035919 EAL domain superfamily APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SMART SM00086 231 273 4.7 T 11-10-2018 IPR001610 PAC motif APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SMART SM00086 108 146 2.3 T 11-10-2018 IPR001610 PAC motif APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SUPERFAMILY SSF55785 167 271 1.95E-16 T 11-10-2018 IPR035965 PAS domain superfamily APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SUPERFAMILY SSF55785 46 143 7.85E-15 T 11-10-2018 IPR035965 PAS domain superfamily APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 165 274 4.0E-11 T 11-10-2018 IPR000014 PAS domain APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Pfam PF00563 EAL domain 622 857 9.6E-70 T 11-10-2018 IPR001633 EAL domain APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SMART SM00091 158 225 5.6E-6 T 11-10-2018 IPR000014 PAS domain APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Pfam PF08447 PAS fold 56 141 9.7E-8 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Gene3D G3DSA:3.30.450.40 293 442 3.7E-24 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Gene3D G3DSA:3.30.450.20 28 160 1.4E-14 T 11-10-2018 APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 PIRSF PIRSF005925 147 871 2.2E-272 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Pfam PF00990 Diguanylate cyclase, GGDEF domain 446 602 2.3E-49 T 11-10-2018 IPR000160 GGDEF domain APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 444 604 1.6E-44 T 11-10-2018 IPR000160 GGDEF domain APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Gene3D G3DSA:3.30.450.20 163 292 5.2E-20 T 11-10-2018 APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 SUPERFAMILY SSF55073 451 607 1.26E-51 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Pfam PF13185 GAF domain 291 434 3.2E-16 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_03055 0259bdf116d70363db44fa4b809e75ee 871 Pfam PF13426 PAS domain 170 271 1.9E-14 T 11-10-2018 IPR000014 PAS domain APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 PRINTS PR00184 Neisseria sp. porin signature 56 81 1.5E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 PRINTS PR00184 Neisseria sp. porin signature 156 173 1.5E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 PRINTS PR00184 Neisseria sp. porin signature 322 346 1.5E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 Gene3D G3DSA:2.40.160.10 10 368 1.7E-82 T 11-10-2018 IPR023614 Porin domain superfamily APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 Pfam PF13609 Gram-negative porin 7 345 1.5E-58 T 11-10-2018 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 SUPERFAMILY SSF56935 21 368 4.58E-74 T 11-10-2018 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 54 65 2.6E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 157 168 2.6E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 98 108 2.6E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 325 342 2.6E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_23680 8c4a9f8e8bbb9fdf95198784babd4529 368 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 230 242 2.6E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_27550 1a595c796904ab43325eb697074925f4 173 SUPERFAMILY SSF50249 3 173 3.77E-62 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_27550 1a595c796904ab43325eb697074925f4 173 Gene3D G3DSA:2.40.50.140 1 118 2.9E-47 T 11-10-2018 APT56_27550 1a595c796904ab43325eb697074925f4 173 PIRSF PIRSF002070 1 161 2.2E-37 T 11-10-2018 APT56_27550 1a595c796904ab43325eb697074925f4 173 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 173 2.2E-56 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 APT56_27550 1a595c796904ab43325eb697074925f4 173 Pfam PF00436 Single-strand binding protein family 4 109 2.9E-43 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 APT56_27550 1a595c796904ab43325eb697074925f4 173 Hamap MF_00984 Single-stranded DNA-binding protein. 4 113 38.51 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 APT56_01575 6b11680fd58f79890b76757d5fb4a86f 276 PIRSF PIRSF000388 7 276 5.7E-100 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 APT56_01575 6b11680fd58f79890b76757d5fb4a86f 276 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 17 275 39.194 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 APT56_01575 6b11680fd58f79890b76757d5fb4a86f 276 Gene3D G3DSA:3.20.20.60 15 276 7.4E-98 T 11-10-2018 APT56_01575 6b11680fd58f79890b76757d5fb4a86f 276 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 18 275 1.4E-90 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 APT56_01575 6b11680fd58f79890b76757d5fb4a86f 276 Pfam PF02548 Ketopantoate hydroxymethyltransferase 16 270 1.8E-101 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 APT56_01575 6b11680fd58f79890b76757d5fb4a86f 276 SUPERFAMILY SSF51621 16 275 1.22E-93 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_10655 569bf6ff7d8802af6fe5ae65fe7e0fe9 145 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 8.2E-27 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type APT56_10655 569bf6ff7d8802af6fe5ae65fe7e0fe9 145 Pfam PF02082 Transcriptional regulator 1 83 4.0E-21 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type APT56_10655 569bf6ff7d8802af6fe5ae65fe7e0fe9 145 SUPERFAMILY SSF46785 2 133 4.77E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10655 569bf6ff7d8802af6fe5ae65fe7e0fe9 145 Gene3D G3DSA:1.10.10.10 1 140 3.3E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 Gene3D G3DSA:3.40.50.740 302 472 3.6E-56 T 11-10-2018 APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 Gene3D G3DSA:3.40.228.10 549 630 3.3E-24 T 11-10-2018 APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 SUPERFAMILY SSF50692 620 809 1.28E-43 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 Gene3D G3DSA:3.40.228.10 1 275 2.7E-71 T 11-10-2018 APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 Pfam PF00384 Molybdopterin oxidoreductase 2 378 1.2E-19 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 808 0.0 T 11-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 Gene3D G3DSA:2.40.40.20 631 809 1.1E-69 T 11-10-2018 APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 SUPERFAMILY SSF53706 1 641 1.16E-223 T 11-10-2018 APT56_01930 8ae36aa83d14afcc3903f12899c4ec70 809 Pfam PF01568 Molydopterin dinucleotide binding domain 686 802 2.3E-15 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APT56_09055 ea351d79fad861707ae8aa15fb3a7867 431 SUPERFAMILY SSF52540 6 241 6.65E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09055 ea351d79fad861707ae8aa15fb3a7867 431 SMART SM00382 36 220 1.4E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09055 ea351d79fad861707ae8aa15fb3a7867 431 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_09055 ea351d79fad861707ae8aa15fb3a7867 431 Gene3D G3DSA:3.40.50.300 4 281 2.9E-63 T 11-10-2018 APT56_09055 ea351d79fad861707ae8aa15fb3a7867 431 Pfam PF00005 ABC transporter 27 166 6.6E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_09055 ea351d79fad861707ae8aa15fb3a7867 431 Pfam PF09821 C-terminal AAA-associated domain 299 417 9.2E-38 T 11-10-2018 IPR018632 C-terminal AAA-associated domain APT56_26980 eeee2743e2cdb27e220422de670b7248 220 SUPERFAMILY SSF53187 17 216 1.0E-30 T 11-10-2018 APT56_26980 eeee2743e2cdb27e220422de670b7248 220 Gene3D G3DSA:3.40.630.40 15 219 1.8E-35 T 11-10-2018 APT56_26980 eeee2743e2cdb27e220422de670b7248 220 SMART SM00646 77 215 5.8E-10 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT56_26980 eeee2743e2cdb27e220422de670b7248 220 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 18 215 2.2E-37 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT56_08380 5b0268d0d2169ae1897c1b58d489059c 394 Gene3D G3DSA:3.90.1150.10 288 385 1.2E-131 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_08380 5b0268d0d2169ae1897c1b58d489059c 394 Gene3D G3DSA:3.40.640.10 64 287 1.2E-131 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_08380 5b0268d0d2169ae1897c1b58d489059c 394 SUPERFAMILY SSF53383 1 389 2.02E-105 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_08380 5b0268d0d2169ae1897c1b58d489059c 394 Pfam PF00155 Aminotransferase class I and II 31 377 2.5E-55 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_09870 663f1c7ab45f3b776f7bfc619a847c66 338 Gene3D G3DSA:3.40.190.170 29 338 1.2E-107 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_09870 663f1c7ab45f3b776f7bfc619a847c66 338 PIRSF PIRSF006470 3 335 1.1E-119 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_09870 663f1c7ab45f3b776f7bfc619a847c66 338 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 290 1.0E-82 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_09870 663f1c7ab45f3b776f7bfc619a847c66 338 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 318 1.2E-94 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 Pfam PF00701 Dihydrodipicolinate synthetase family 8 278 8.7E-52 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 14 284 3.0E-65 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 SMART SM01130 7 291 4.4E-86 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 PIRSF PIRSF001365 3 297 7.0E-66 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 SUPERFAMILY SSF51569 3 290 1.78E-75 T 11-10-2018 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 137 167 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 43 60 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 7 289 43.112 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 1.1E-15 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 1.1E-15 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 107 123 1.1E-15 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_27475 bb9ce0eaeca45d15aab7033845071ed5 297 Gene3D G3DSA:3.20.20.70 1 291 7.5E-78 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 SUPERFAMILY SSF52540 82 352 4.46E-89 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 SUPERFAMILY SSF47917 350 465 3.92E-54 T 11-10-2018 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 Gene3D G3DSA:1.10.1140.10 350 466 6.4E-59 T 11-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 Gene3D G3DSA:3.40.50.300 81 349 4.7E-112 T 11-10-2018 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 338 347 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 78 3.0E-18 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 135 347 4.0E-64 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 465 56.341 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 Gene3D G3DSA:2.40.10.170 1 80 1.1E-27 T 11-10-2018 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 SMART SM00382 147 324 0.0037 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 465 6.5E-249 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 APT56_02180 d57e8a9fe354a8e3eb89a2f6a8b4fc00 466 SUPERFAMILY SSF50615 3 80 2.17E-24 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_09675 e129a758b56ebd4f4c13cd6d5cbfea71 322 Pfam PF01636 Phosphotransferase enzyme family 27 262 1.1E-31 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase APT56_09675 e129a758b56ebd4f4c13cd6d5cbfea71 322 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 311 3.5E-95 T 11-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 APT56_09675 e129a758b56ebd4f4c13cd6d5cbfea71 322 SUPERFAMILY SSF56112 5 314 9.62E-71 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_09675 e129a758b56ebd4f4c13cd6d5cbfea71 322 Hamap MF_00301 Homoserine kinase [thrB]. 1 322 156.609 T 11-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 APT56_09675 e129a758b56ebd4f4c13cd6d5cbfea71 322 Gene3D G3DSA:3.30.200.20 1 102 4.6E-35 T 11-10-2018 APT56_09675 e129a758b56ebd4f4c13cd6d5cbfea71 322 Gene3D G3DSA:3.90.1200.10 106 316 2.9E-68 T 11-10-2018 APT56_27230 9cf498005c77fe9e50a48cb9fd05a68d 154 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 117 141 - T 11-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site APT56_27230 9cf498005c77fe9e50a48cb9fd05a68d 154 Gene3D G3DSA:1.20.120.910 21 152 9.4E-38 T 11-10-2018 APT56_27230 9cf498005c77fe9e50a48cb9fd05a68d 154 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 32 153 28.459 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 APT56_27230 9cf498005c77fe9e50a48cb9fd05a68d 154 SUPERFAMILY SSF57716 114 152 1.85E-8 T 11-10-2018 APT56_27230 9cf498005c77fe9e50a48cb9fd05a68d 154 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 112 146 7.6E-11 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 APT56_27230 9cf498005c77fe9e50a48cb9fd05a68d 154 SUPERFAMILY SSF109635 20 113 1.44E-28 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily APT56_27230 9cf498005c77fe9e50a48cb9fd05a68d 154 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 36 144 7.3E-43 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 APT56_06080 ec317cc119c24818e22c321c645065c0 81 Pfam PF00593 TonB dependent receptor 10 80 1.7E-6 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_06080 ec317cc119c24818e22c321c645065c0 81 SUPERFAMILY SSF56935 7 81 2.24E-10 T 11-10-2018 APT56_06080 ec317cc119c24818e22c321c645065c0 81 Gene3D G3DSA:2.40.170.20 1 81 3.8E-12 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 SMART SM00382 302 487 7.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 SMART SM00382 37 225 1.3E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 SUPERFAMILY SSF52540 11 239 5.78E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 Gene3D G3DSA:3.40.50.300 272 515 5.3E-61 T 11-10-2018 APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 SUPERFAMILY SSF52540 277 496 1.85E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 Gene3D G3DSA:3.40.50.300 2 249 3.1E-62 T 11-10-2018 APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 Pfam PF00005 ABC transporter 294 437 1.4E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 Pfam PF12698 ABC-2 family transporter protein 576 904 3.9E-35 T 11-10-2018 APT56_24930 82dca26aee6645ef5678e5b38c5667cf 917 Pfam PF00005 ABC transporter 28 175 1.4E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 SMART SM00490 453 539 6.2E-20 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 SUPERFAMILY SSF52540 31 575 6.09E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Gene3D G3DSA:3.40.50.300 408 589 1.2E-48 T 11-10-2018 APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 2 651 0.0 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Pfam PF04851 Type III restriction enzyme, res subunit 34 131 2.3E-8 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Pfam PF00271 Helicase conserved C-terminal domain 435 537 1.4E-17 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 SMART SM00487 3 418 2.9E-28 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 SUPERFAMILY SSF46600 615 653 1.19E-8 T 11-10-2018 IPR036876 UVR domain superfamily APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Hamap MF_00204 UvrABC system protein B [uvrB]. 1 653 42.118 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 SUPERFAMILY SSF52540 2 408 2.35E-134 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Pfam PF12344 Ultra-violet resistance protein B 545 587 7.2E-20 T 11-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Gene3D G3DSA:3.40.50.300 1 181 3.7E-69 T 11-10-2018 APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Gene3D G3DSA:3.40.50.300 257 407 4.2E-51 T 11-10-2018 APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Pfam PF02151 UvrB/uvrC motif 619 652 1.7E-4 T 11-10-2018 IPR001943 UVR domain GO:0005515 APT56_17705 5d4ce4f91d7892111ec96fc3f999d6ca 660 Gene3D G3DSA:4.10.860.10 597 657 4.2E-17 T 11-10-2018 APT56_05685 f9891d0e8dab4c82dcdc775e441397e9 230 SMART SM00448 6 116 5.3E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_05685 f9891d0e8dab4c82dcdc775e441397e9 230 Pfam PF00072 Response regulator receiver domain 8 116 1.1E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_05685 f9891d0e8dab4c82dcdc775e441397e9 230 SMART SM00862 152 228 2.5E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_05685 f9891d0e8dab4c82dcdc775e441397e9 230 SUPERFAMILY SSF52172 6 186 2.49E-37 T 11-10-2018 IPR011006 CheY-like superfamily APT56_05685 f9891d0e8dab4c82dcdc775e441397e9 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 1.4E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_05685 f9891d0e8dab4c82dcdc775e441397e9 230 Gene3D G3DSA:3.40.50.2300 2 125 8.5E-34 T 11-10-2018 APT56_05685 f9891d0e8dab4c82dcdc775e441397e9 230 Gene3D G3DSA:1.10.10.10 128 230 1.2E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 54 1.4E-17 T 11-10-2018 APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 Gene3D G3DSA:3.30.70.920 60 156 9.9E-17 T 11-10-2018 APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 SUPERFAMILY SSF46785 7 64 5.0E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 SUPERFAMILY SSF54909 70 156 6.57E-17 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 Gene3D G3DSA:1.10.10.10 8 59 9.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 Pfam PF01037 Lrp/AsnC ligand binding domain 73 147 2.2E-16 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 1.7E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 1.7E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 1.7E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_07235 c8a0908ba29135944f2bec7edbfb3211 156 SMART SM00344 7 116 7.3E-34 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_17365 f9eafaad3f34dfe713e92311ccad3259 824 Pfam PF13567 Domain of unknown function (DUF4131) 28 202 4.5E-15 T 11-10-2018 IPR025405 Domain of unknown function DUF4131 APT56_17365 f9eafaad3f34dfe713e92311ccad3259 824 SMART SM00849 564 768 1.6E-15 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_17365 f9eafaad3f34dfe713e92311ccad3259 824 SUPERFAMILY SSF56281 552 821 3.79E-42 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_17365 f9eafaad3f34dfe713e92311ccad3259 824 Gene3D G3DSA:3.60.15.10 555 810 1.4E-46 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_17365 f9eafaad3f34dfe713e92311ccad3259 824 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 160 797 5.1E-89 T 11-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 APT56_17365 f9eafaad3f34dfe713e92311ccad3259 824 Pfam PF00753 Metallo-beta-lactamase superfamily 563 752 1.3E-9 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_17365 f9eafaad3f34dfe713e92311ccad3259 824 Pfam PF03772 Competence protein 244 525 5.7E-51 T 11-10-2018 IPR004477 ComEC/Rec2-related protein APT56_17365 f9eafaad3f34dfe713e92311ccad3259 824 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 265 456 2.3E-19 T 11-10-2018 IPR004477 ComEC/Rec2-related protein APT56_10355 1a490d936e2316f654712609d708ea4e 287 Gene3D G3DSA:1.10.10.10 1 76 3.0E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10355 1a490d936e2316f654712609d708ea4e 287 Pfam PF01380 SIS domain 129 256 8.8E-19 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_10355 1a490d936e2316f654712609d708ea4e 287 SUPERFAMILY SSF46689 2 76 2.15E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_10355 1a490d936e2316f654712609d708ea4e 287 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 74 5.0E-7 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 APT56_10355 1a490d936e2316f654712609d708ea4e 287 SUPERFAMILY SSF53697 101 262 1.58E-19 T 11-10-2018 APT56_10355 1a490d936e2316f654712609d708ea4e 287 Gene3D G3DSA:3.40.50.10490 96 281 5.0E-32 T 11-10-2018 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 884 965 5.4E-12 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 Pfam PF00034 Cytochrome c 552 651 2.4E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 SUPERFAMILY SSF46626 885 977 2.36E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 Gene3D G3DSA:1.10.760.10 672 805 2.0E-8 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 Gene3D G3DSA:3.30.365.10 440 501 4.6E-5 T 11-10-2018 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 Gene3D G3DSA:3.30.365.10 273 398 1.8E-10 T 11-10-2018 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 Gene3D G3DSA:1.10.760.10 864 993 3.1E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 SMART SM01008 1 83 0.0028 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 SUPERFAMILY SSF46626 546 673 1.24E-23 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 SUPERFAMILY SSF56003 122 497 5.72E-17 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 Gene3D G3DSA:1.10.760.10 514 657 2.2E-10 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16380 b22c32f13a8aa2350585ecd47c845025 993 SUPERFAMILY SSF46626 681 809 1.09E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_17515 83fee50e404c28d3505f53c3c96b1971 303 Gene3D G3DSA:3.40.50.12260 166 270 5.6E-90 T 11-10-2018 APT56_17515 83fee50e404c28d3505f53c3c96b1971 303 Pfam PF01497 Periplasmic binding protein 38 269 2.2E-23 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APT56_17515 83fee50e404c28d3505f53c3c96b1971 303 SUPERFAMILY SSF53807 17 284 2.2E-62 T 11-10-2018 APT56_17515 83fee50e404c28d3505f53c3c96b1971 303 Gene3D G3DSA:3.40.50.1980 29 285 5.6E-90 T 11-10-2018 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 SUPERFAMILY SSF51735 122 280 1.89E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 1.6E-81 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 1.6E-81 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 1.6E-81 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.6E-81 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 238 254 1.6E-81 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.6E-81 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.6E-81 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 1.3E-42 T 11-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 SUPERFAMILY SSF53223 1 121 6.91E-42 T 11-10-2018 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 259 267 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 Gene3D G3DSA:3.40.50.720 6 258 8.7E-114 T 11-10-2018 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 282 39.194 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 281 2.0E-69 T 11-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 Gene3D G3DSA:3.40.50.10860 8 276 8.7E-114 T 11-10-2018 APT56_11820 7f3e6c6e649d92c424115b5a700f6bba 283 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APT56_13890 3f4b9c5d560e79e792e2f125bf10147e 207 PIRSF PIRSF006324 1 205 4.9E-51 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_13890 3f4b9c5d560e79e792e2f125bf10147e 207 Pfam PF01810 LysE type translocator 14 202 2.6E-34 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_27245 73d5f67692f03fc16085f6aff1ce367e 101 Pfam PF11604 Copper binding periplasmic protein CusF 36 100 2.4E-24 T 11-10-2018 IPR021647 Copper binding periplasmic protein CusF APT56_27245 73d5f67692f03fc16085f6aff1ce367e 101 Gene3D G3DSA:2.40.50.320 30 101 1.3E-21 T 11-10-2018 APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Gene3D G3DSA:1.25.40.10 332 484 3.0E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Gene3D G3DSA:1.25.40.10 22 217 2.4E-57 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 310 345 7.2E-9 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 382 417 4.0E-11 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 165 200 7.1E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 93 128 2.4E-9 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 57 92 1.8E-11 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 274 309 1.6E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 238 273 8.3E-11 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 201 237 8.2E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 129 164 2.1E-10 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 346 381 1.1E-10 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SMART SM00671 418 446 140.0 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SUPERFAMILY SSF81901 220 356 4.97E-38 T 11-10-2018 APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Gene3D G3DSA:1.25.40.10 218 331 3.7E-34 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SUPERFAMILY SSF81901 364 444 2.88E-19 T 11-10-2018 APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 201 236 7.0E-8 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 94 128 8.2E-8 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 311 344 6.7E-9 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 129 163 7.0E-9 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 57 90 6.6E-10 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 419 434 52.0 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 165 200 0.0014 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 382 417 2.7E-8 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 238 273 1.2E-7 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 346 381 2.9E-8 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 Pfam PF08238 Sel1 repeat 274 309 1.0E-7 T 11-10-2018 IPR006597 Sel1-like repeat APT56_14115 47496b0570418b72d6b8f054f4c8d9ad 497 SUPERFAMILY SSF81901 29 218 8.72E-45 T 11-10-2018 APT56_27655 496dce9dc05652a44d388f2d63ada8d5 145 Pfam PF01230 HIT domain 13 103 5.3E-17 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_27655 496dce9dc05652a44d388f2d63ada8d5 145 Gene3D G3DSA:3.30.428.10 1 144 7.7E-35 T 11-10-2018 IPR036265 HIT-like superfamily APT56_27655 496dce9dc05652a44d388f2d63ada8d5 145 SUPERFAMILY SSF54197 3 137 7.58E-32 T 11-10-2018 IPR036265 HIT-like superfamily APT56_27655 496dce9dc05652a44d388f2d63ada8d5 145 PRINTS PR00332 Histidine triad family signature 6 22 4.0E-14 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_27655 496dce9dc05652a44d388f2d63ada8d5 145 PRINTS PR00332 Histidine triad family signature 27 45 4.0E-14 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_27655 496dce9dc05652a44d388f2d63ada8d5 145 PRINTS PR00332 Histidine triad family signature 89 99 4.0E-14 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_27255 92a210464501b70a2a2b73fb83a5c6f4 335 TIGRFAM TIGR00510 lipA: lipoyl synthase 46 328 2.1E-130 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT56_27255 92a210464501b70a2a2b73fb83a5c6f4 335 SUPERFAMILY SSF102114 65 330 2.09E-66 T 11-10-2018 APT56_27255 92a210464501b70a2a2b73fb83a5c6f4 335 SMART SM00729 97 306 8.4E-15 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_27255 92a210464501b70a2a2b73fb83a5c6f4 335 Pfam PF04055 Radical SAM superfamily 104 263 1.9E-13 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_27255 92a210464501b70a2a2b73fb83a5c6f4 335 Gene3D G3DSA:3.20.20.70 95 300 1.3E-19 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_27255 92a210464501b70a2a2b73fb83a5c6f4 335 Hamap MF_00206 Lipoyl synthase [lipA]. 49 335 153.829 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT56_27255 92a210464501b70a2a2b73fb83a5c6f4 335 PIRSF PIRSF005963 2 334 2.3E-129 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT56_27255 92a210464501b70a2a2b73fb83a5c6f4 335 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 29 86 3.1E-8 T 11-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APT56_12875 15c0ab8819aec95b69f1ef2d9992e7ef 384 Pfam PF01494 FAD binding domain 2 316 1.3E-19 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_12875 15c0ab8819aec95b69f1ef2d9992e7ef 384 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 5.2E-17 T 11-10-2018 APT56_12875 15c0ab8819aec95b69f1ef2d9992e7ef 384 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 5.2E-17 T 11-10-2018 APT56_12875 15c0ab8819aec95b69f1ef2d9992e7ef 384 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 5.2E-17 T 11-10-2018 APT56_12875 15c0ab8819aec95b69f1ef2d9992e7ef 384 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 5.2E-17 T 11-10-2018 APT56_12875 15c0ab8819aec95b69f1ef2d9992e7ef 384 SUPERFAMILY SSF51905 1 370 3.83E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_12875 15c0ab8819aec95b69f1ef2d9992e7ef 384 Gene3D G3DSA:3.50.50.60 5 340 1.6E-79 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_12875 15c0ab8819aec95b69f1ef2d9992e7ef 384 Gene3D G3DSA:3.30.9.30 37 270 1.6E-79 T 11-10-2018 APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 Gene3D G3DSA:3.40.50.300 1 240 3.5E-53 T 11-10-2018 APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 Gene3D G3DSA:3.40.50.300 249 512 4.8E-42 T 11-10-2018 APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 SMART SM00382 291 486 3.6E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 SMART SM00382 32 232 4.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 SUPERFAMILY SSF52540 6 234 3.65E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 Pfam PF00005 ABC transporter 283 437 3.6E-16 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 Pfam PF00005 ABC transporter 23 176 8.4E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 TIGRFAM TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein 7 506 2.2E-234 T 11-10-2018 IPR013455 ABC transporter, D-xylose, ATP-binding protein GO:0005524|GO:0015614|GO:0015753|GO:0016020 APT56_21380 8e99179e660b4b36c27fa9de109da18f 515 SUPERFAMILY SSF52540 263 498 9.19E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12760 643f56bcf3d970db96772006e654debe 935 SMART SM00869 658 925 2.4E-47 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_12760 643f56bcf3d970db96772006e654debe 935 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 409 935 3.4E-48 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_12760 643f56bcf3d970db96772006e654debe 935 Gene3D G3DSA:2.40.128.130 594 935 7.7E-72 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_12760 643f56bcf3d970db96772006e654debe 935 Pfam PF03797 Autotransporter beta-domain 661 915 2.0E-59 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_12760 643f56bcf3d970db96772006e654debe 935 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 339 370 7.3E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_12760 643f56bcf3d970db96772006e654debe 935 SUPERFAMILY SSF103515 602 935 9.02E-63 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_12760 643f56bcf3d970db96772006e654debe 935 SUPERFAMILY SSF51126 164 487 8.16E-19 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 Pfam PF00672 HAMP domain 215 261 1.3E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 SUPERFAMILY SSF58104 233 517 5.1E-70 T 11-10-2018 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 481 1.2E-51 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 SMART SM00283 266 513 2.8E-86 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 Pfam PF02203 Tar ligand binding domain homologue 1 153 9.5E-20 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 SUPERFAMILY SSF47170 27 178 1.03E-18 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 SMART SM00304 213 265 6.0E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 Gene3D G3DSA:1.10.287.950 214 515 6.1E-87 T 11-10-2018 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 1.1E-64 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 188 208 1.1E-64 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 1.1E-64 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 1.1E-64 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 1.1E-64 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 61 76 1.1E-64 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.1E-64 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21905 756956fb5b018bc1768dd7e027a3d045 539 Gene3D G3DSA:1.20.120.30 24 191 1.8E-10 T 11-10-2018 APT56_02025 ea15a691baa9c2feba4b0a73b0de286c 343 Pfam PF02885 Glycosyl transferase family, helical bundle domain 8 68 1.1E-10 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT56_02025 ea15a691baa9c2feba4b0a73b0de286c 343 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 7 337 36.481 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 APT56_02025 ea15a691baa9c2feba4b0a73b0de286c 343 SUPERFAMILY SSF47648 5 71 6.02E-16 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT56_02025 ea15a691baa9c2feba4b0a73b0de286c 343 Gene3D G3DSA:3.40.1030.10 75 342 2.9E-103 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT56_02025 ea15a691baa9c2feba4b0a73b0de286c 343 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 10 336 5.4E-123 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 APT56_02025 ea15a691baa9c2feba4b0a73b0de286c 343 Gene3D G3DSA:1.20.970.10 1 72 2.1E-30 T 11-10-2018 APT56_02025 ea15a691baa9c2feba4b0a73b0de286c 343 SUPERFAMILY SSF52418 77 340 2.09E-93 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT56_02025 ea15a691baa9c2feba4b0a73b0de286c 343 Pfam PF00591 Glycosyl transferase family, a/b domain 78 327 1.1E-90 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Gene3D G3DSA:3.40.228.10 377 584 8.4E-173 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Gene3D G3DSA:2.20.25.90 241 293 7.6E-17 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 PIRSF PIRSF036643 18 955 0.0 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Pfam PF01568 Molydopterin dinucleotide binding domain 812 916 6.1E-28 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 SMART SM00929 104 144 9.9E-19 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 21 97 6.5E-23 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 245 920 2.8E-284 T 11-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Pfam PF00384 Molybdopterin oxidoreductase 297 728 1.6E-74 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 SUPERFAMILY SSF50692 768 923 1.72E-41 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APT56_22915 25772bdc5452c3488c7524eeec064eed 958 SUPERFAMILY SSF54292 22 95 2.42E-20 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 213 224 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_22915 25772bdc5452c3488c7524eeec064eed 958 SUPERFAMILY SSF53706 241 771 2.49E-192 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Gene3D G3DSA:3.30.70.20 149 231 6.1E-24 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 SMART SM00926 240 294 3.1E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Pfam PF00037 4Fe-4S binding domain 210 226 1.3E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 241 292 2.7E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 SUPERFAMILY SSF54862 96 233 5.02E-38 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Gene3D G3DSA:3.10.20.740 22 143 6.1E-40 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Gene3D G3DSA:3.40.50.740 302 771 8.4E-173 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Gene3D G3DSA:2.40.40.20 809 923 1.6E-35 T 11-10-2018 APT56_22915 25772bdc5452c3488c7524eeec064eed 958 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 104 143 8.5E-17 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_16010 ab5feb3f2a440cacb88c6501a366aaf9 201 SUPERFAMILY SSF52833 1 84 6.2E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_16010 ab5feb3f2a440cacb88c6501a366aaf9 201 Gene3D G3DSA:1.20.1050.10 83 188 3.5E-68 T 11-10-2018 APT56_16010 ab5feb3f2a440cacb88c6501a366aaf9 201 Gene3D G3DSA:3.40.30.10 3 195 3.5E-68 T 11-10-2018 APT56_16010 ab5feb3f2a440cacb88c6501a366aaf9 201 SUPERFAMILY SSF47616 85 197 4.73E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_16010 ab5feb3f2a440cacb88c6501a366aaf9 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 74 4.7E-8 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_16010 ab5feb3f2a440cacb88c6501a366aaf9 201 Pfam PF14497 Glutathione S-transferase, C-terminal domain 119 196 1.1E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_08045 85f393f5659ea0d879c0595d0f914e89 322 SUPERFAMILY SSF53850 114 284 2.03E-12 T 11-10-2018 APT56_08045 85f393f5659ea0d879c0595d0f914e89 322 PIRSF PIRSF017082 2 322 6.4E-73 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_08045 85f393f5659ea0d879c0595d0f914e89 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 318 8.9E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_08045 85f393f5659ea0d879c0595d0f914e89 322 Gene3D G3DSA:3.40.190.150 27 308 5.0E-104 T 11-10-2018 APT56_08045 85f393f5659ea0d879c0595d0f914e89 322 Gene3D G3DSA:3.40.190.10 124 247 5.0E-104 T 11-10-2018 APT56_14780 1cb1845e5f87cf5147da0babe2cded37 325 Gene3D G3DSA:3.40.190.150 30 315 1.1E-105 T 11-10-2018 APT56_14780 1cb1845e5f87cf5147da0babe2cded37 325 PIRSF PIRSF017082 1 325 1.8E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_14780 1cb1845e5f87cf5147da0babe2cded37 325 Gene3D G3DSA:3.40.190.10 128 250 1.1E-105 T 11-10-2018 APT56_14780 1cb1845e5f87cf5147da0babe2cded37 325 SUPERFAMILY SSF53850 123 287 2.66E-9 T 11-10-2018 APT56_14780 1cb1845e5f87cf5147da0babe2cded37 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 321 4.6E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_01070 064d8cb2d63e2252996346968eb0df48 402 Gene3D G3DSA:3.90.1150.10 23 391 4.6E-92 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_01070 064d8cb2d63e2252996346968eb0df48 402 Gene3D G3DSA:3.40.640.10 36 294 4.6E-92 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_01070 064d8cb2d63e2252996346968eb0df48 402 SUPERFAMILY SSF53383 14 400 7.03E-78 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_01070 064d8cb2d63e2252996346968eb0df48 402 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 211 231 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APT56_01070 064d8cb2d63e2252996346968eb0df48 402 Pfam PF00266 Aminotransferase class-V 30 390 3.0E-53 T 11-10-2018 IPR000192 Aminotransferase class V domain APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 SUPERFAMILY SSF46785 5 115 3.8E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 Gene3D G3DSA:3.40.190.290 94 291 2.0E-39 T 11-10-2018 APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 Gene3D G3DSA:1.10.10.10 4 87 2.8E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.3E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 Pfam PF03466 LysR substrate binding domain 92 288 2.1E-32 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20440 a5f0e190fcab49c806376f60f7a34f83 299 SUPERFAMILY SSF53850 92 291 3.44E-38 T 11-10-2018 APT56_07920 9a2b3438a296eac995915a518dcc82fd 249 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 9 245 18.605 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07920 9a2b3438a296eac995915a518dcc82fd 249 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 10 219 9.4E-78 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07920 9a2b3438a296eac995915a518dcc82fd 249 SUPERFAMILY SSF55120 9 226 3.6E-80 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07920 9a2b3438a296eac995915a518dcc82fd 249 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 222 6.8E-15 T 11-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 APT56_07920 9a2b3438a296eac995915a518dcc82fd 249 Gene3D G3DSA:3.30.2350.10 1 239 1.3E-90 T 11-10-2018 APT56_07920 9a2b3438a296eac995915a518dcc82fd 249 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 31 180 2.2E-57 T 11-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 Gene3D G3DSA:1.20.1560.10 627 936 3.8E-50 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 Gene3D G3DSA:3.40.50.300 331 580 7.6E-88 T 11-10-2018 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 Gene3D G3DSA:3.40.50.300 952 1200 3.8E-85 T 11-10-2018 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 Pfam PF00005 ABC transporter 972 1121 1.4E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 Pfam PF00005 ABC transporter 355 501 1.0E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 SUPERFAMILY SSF90123 6 317 1.31E-47 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 SUPERFAMILY SSF90123 630 943 1.2E-51 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 Gene3D G3DSA:1.20.1560.10 5 319 3.0E-43 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 ProSitePatterns PS00211 ABC transporters family signature. 1093 1107 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 SUPERFAMILY SSF52540 331 572 2.17E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 SUPERFAMILY SSF52540 949 1191 1.48E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 629 1151 7.8E-99 T 11-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 SMART SM00382 362 548 4.2E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 SMART SM00382 981 1167 6.1E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 Pfam PF00664 ABC transporter transmembrane region 642 902 2.7E-19 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_11345 768f4ab3504614c67d1c18abdd497ee4 1206 Pfam PF00664 ABC transporter transmembrane region 21 280 4.0E-23 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_06705 474c5e74c199cb008a230f2b2f5aa894 399 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 58 382 4.7E-48 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_06705 474c5e74c199cb008a230f2b2f5aa894 399 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 6 395 51.191 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_06705 474c5e74c199cb008a230f2b2f5aa894 399 PIRSF PIRSF001413 2 399 3.3E-160 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_06705 474c5e74c199cb008a230f2b2f5aa894 399 SUPERFAMILY SSF53686 7 393 1.07E-146 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_06705 474c5e74c199cb008a230f2b2f5aa894 399 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 11 394 5.6E-188 T 11-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_06705 474c5e74c199cb008a230f2b2f5aa894 399 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 85 99 - T 11-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_06705 474c5e74c199cb008a230f2b2f5aa894 399 Gene3D G3DSA:3.40.50.1100 14 210 3.7E-182 T 11-10-2018 APT56_06705 474c5e74c199cb008a230f2b2f5aa894 399 Gene3D G3DSA:3.40.50.1100 58 388 3.7E-182 T 11-10-2018 APT56_00670 456a0fd95b442474f226a5566a7392b8 379 SMART SM01119 274 362 2.3E-31 T 11-10-2018 IPR026956 D-serine dehydratase-like domain APT56_00670 456a0fd95b442474f226a5566a7392b8 379 SUPERFAMILY SSF51419 31 263 4.58E-42 T 11-10-2018 IPR029066 PLP-binding barrel APT56_00670 456a0fd95b442474f226a5566a7392b8 379 Gene3D G3DSA:2.40.37.20 24 375 9.4E-146 T 11-10-2018 APT56_00670 456a0fd95b442474f226a5566a7392b8 379 Gene3D G3DSA:3.20.20.10 33 255 9.4E-146 T 11-10-2018 IPR029066 PLP-binding barrel APT56_00670 456a0fd95b442474f226a5566a7392b8 379 Pfam PF14031 Putative serine dehydratase domain 274 360 2.2E-20 T 11-10-2018 IPR026956 D-serine dehydratase-like domain APT56_00670 456a0fd95b442474f226a5566a7392b8 379 Pfam PF01168 Alanine racemase, N-terminal domain 31 257 4.1E-29 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_26220 720bff1044a6a93520ddfa7c0e8a4141 420 Gene3D G3DSA:3.40.50.10840 3 239 8.8E-86 T 11-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily APT56_26220 720bff1044a6a93520ddfa7c0e8a4141 420 Gene3D G3DSA:3.40.980.20 240 419 4.2E-57 T 11-10-2018 APT56_26220 720bff1044a6a93520ddfa7c0e8a4141 420 SUPERFAMILY SSF142764 5 417 1.2E-127 T 11-10-2018 APT56_26220 720bff1044a6a93520ddfa7c0e8a4141 420 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 252 412 4.8E-41 T 11-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain APT56_26220 720bff1044a6a93520ddfa7c0e8a4141 420 Pfam PF07005 Putative sugar-binding N-terminal domain 5 228 1.7E-70 T 11-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain APT56_13980 307538d12410043ecfdc5e27ebef93be 106 SUPERFAMILY SSF50022 1 103 1.23E-28 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_13980 307538d12410043ecfdc5e27ebef93be 106 Gene3D G3DSA:2.102.10.10 1 106 4.9E-31 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_13980 307538d12410043ecfdc5e27ebef93be 106 Pfam PF00355 Rieske [2Fe-2S] domain 3 90 1.2E-16 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_03370 4bbccd14810902f1bb2944feba480939 1168 SUPERFAMILY SSF52922 282 373 1.94E-7 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_03370 4bbccd14810902f1bb2944feba480939 1168 SUPERFAMILY SSF52518 435 616 5.42E-10 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_03370 4bbccd14810902f1bb2944feba480939 1168 Gene3D G3DSA:3.40.920.10 720 923 7.4E-17 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 APT56_03370 4bbccd14810902f1bb2944feba480939 1168 Gene3D G3DSA:3.40.50.970 16 227 1.1E-22 T 11-10-2018 APT56_03370 4bbccd14810902f1bb2944feba480939 1168 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 731 918 6.3E-20 T 11-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 APT56_03370 4bbccd14810902f1bb2944feba480939 1168 SUPERFAMILY SSF52518 27 229 3.41E-14 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_03370 4bbccd14810902f1bb2944feba480939 1168 SUPERFAMILY SSF53323 723 941 5.75E-24 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 2.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 2.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 SMART SM00895 82 206 5.2E-18 T 11-10-2018 IPR011711 GntR, C-terminal APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 Gene3D G3DSA:1.10.10.10 7 74 2.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 Pfam PF07729 FCD domain 82 205 7.0E-26 T 11-10-2018 IPR011711 GntR, C-terminal APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 3.3E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 SUPERFAMILY SSF46785 1 76 5.64E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 SMART SM00345 14 72 3.2E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 SUPERFAMILY SSF48008 78 213 6.28E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_21325 5bafb015e03e533bb488baa86c2f4130 249 Gene3D G3DSA:1.20.120.530 75 220 3.4E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_04095 82bd89b830b13a1846735d48e036610e 166 Pfam PF00691 OmpA family 63 158 2.0E-21 T 11-10-2018 IPR006665 OmpA-like domain APT56_04095 82bd89b830b13a1846735d48e036610e 166 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 4 164 30.069 T 11-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 APT56_04095 82bd89b830b13a1846735d48e036610e 166 Gene3D G3DSA:3.30.1330.60 47 166 4.2E-36 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_04095 82bd89b830b13a1846735d48e036610e 166 ProSitePatterns PS01068 OmpA-like domain. 96 140 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 APT56_04095 82bd89b830b13a1846735d48e036610e 166 SUPERFAMILY SSF103088 55 164 5.89E-32 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_04095 82bd89b830b13a1846735d48e036610e 166 PRINTS PR01021 OMPA domain signature 64 86 2.2E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_04095 82bd89b830b13a1846735d48e036610e 166 PRINTS PR01021 OMPA domain signature 94 109 2.2E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_04095 82bd89b830b13a1846735d48e036610e 166 PRINTS PR01021 OMPA domain signature 109 125 2.2E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_04095 82bd89b830b13a1846735d48e036610e 166 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 61 164 2.9E-41 T 11-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 SUPERFAMILY SSF46785 1 111 6.18E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 Gene3D G3DSA:3.40.190.10 93 280 1.5E-24 T 11-10-2018 APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 Gene3D G3DSA:3.40.190.10 166 269 1.5E-24 T 11-10-2018 APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 Gene3D G3DSA:1.10.10.10 1 88 5.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 SUPERFAMILY SSF53850 87 300 1.67E-28 T 11-10-2018 APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 Pfam PF03466 LysR substrate binding domain 87 287 1.2E-24 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11335 04419ea679119d6b7bf5f56cc740f51f 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 2.8E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03205 db9971d2293f26095b8c44fef7338a63 405 Gene3D G3DSA:3.90.1150.10 31 397 2.3E-128 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_03205 db9971d2293f26095b8c44fef7338a63 405 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 241 254 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APT56_03205 db9971d2293f26095b8c44fef7338a63 405 Gene3D G3DSA:3.40.640.10 68 291 2.3E-128 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_03205 db9971d2293f26095b8c44fef7338a63 405 SUPERFAMILY SSF53383 9 403 1.63E-107 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_03205 db9971d2293f26095b8c44fef7338a63 405 Pfam PF00155 Aminotransferase class I and II 37 397 4.2E-65 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_19240 b270ff78f5e576da1c98221e68737068 713 Pfam PF01968 Hydantoinase/oxoprolinase 212 506 3.2E-77 T 11-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_19240 b270ff78f5e576da1c98221e68737068 713 SUPERFAMILY SSF53067 16 502 7.77E-6 T 11-10-2018 APT56_19240 b270ff78f5e576da1c98221e68737068 713 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 15 191 1.4E-51 T 11-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 SMART SM00382 26 238 2.9E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 SMART SM00382 345 514 2.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 SUPERFAMILY SSF52540 6 237 2.42E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 Pfam PF00005 ABC transporter 337 469 2.7E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 SUPERFAMILY SSF52540 299 525 3.07E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 Gene3D G3DSA:3.40.50.300 4 279 6.2E-58 T 11-10-2018 APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 Pfam PF12848 ABC transporter 224 311 5.9E-19 T 11-10-2018 IPR032781 ABC-transporter extension domain APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 Pfam PF00005 ABC transporter 18 184 1.0E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15240 740a156cf79ccd5d9a699f1c2329c0a6 534 Gene3D G3DSA:3.40.50.300 282 533 8.7E-53 T 11-10-2018 APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 Gene3D G3DSA:3.40.50.800 332 430 1.9E-21 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 13 411 1.9E-151 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 PIRSF PIRSF001549 7 427 4.6E-113 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 Pfam PF13393 Histidyl-tRNA synthetase 16 318 3.1E-47 T 11-10-2018 APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 Pfam PF03129 Anticodon binding domain 336 426 6.3E-10 T 11-10-2018 IPR004154 Anticodon-binding APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 Gene3D G3DSA:3.30.930.10 8 329 1.7E-118 T 11-10-2018 APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 9 431 31.899 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 SUPERFAMILY SSF55681 13 322 4.59E-100 T 11-10-2018 APT56_09520 5d2959f7b6c73c604cc16f701855ec0a 431 SUPERFAMILY SSF52954 332 427 6.19E-19 T 11-10-2018 APT56_06275 5eabe2a0c34479e5882ed6403d18c1a2 508 SUPERFAMILY SSF56954 6 478 3.53E-85 T 11-10-2018 APT56_06275 5eabe2a0c34479e5882ed6403d18c1a2 508 Pfam PF02321 Outer membrane efflux protein 297 477 2.5E-21 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_06275 5eabe2a0c34479e5882ed6403d18c1a2 508 Pfam PF02321 Outer membrane efflux protein 79 269 3.0E-18 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_06275 5eabe2a0c34479e5882ed6403d18c1a2 508 Gene3D G3DSA:1.20.1600.10 69 477 6.3E-100 T 11-10-2018 APT56_06275 5eabe2a0c34479e5882ed6403d18c1a2 508 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 478 7.5E-98 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_06275 5eabe2a0c34479e5882ed6403d18c1a2 508 Gene3D G3DSA:2.20.200.10 117 368 6.3E-100 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Gene3D G3DSA:3.30.70.1440 679 876 0.0 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 SUPERFAMILY SSF82693 575 681 1.73E-26 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 SUPERFAMILY SSF82866 841 1036 1.02E-46 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Gene3D G3DSA:1.20.1640.10 523 1033 0.0 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 SUPERFAMILY SSF82693 682 867 6.28E-26 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Gene3D G3DSA:3.30.70.1320 135 335 0.0 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 SUPERFAMILY SSF82866 299 499 1.31E-53 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 SUPERFAMILY SSF82693 41 134 4.19E-26 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Pfam PF00873 AcrB/AcrD/AcrF family 3 1036 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 562 579 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.2E-91 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Gene3D G3DSA:3.30.2090.10 731 819 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 SUPERFAMILY SSF82693 139 333 1.26E-26 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 SUPERFAMILY SSF82714 732 818 2.49E-20 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1042 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Gene3D G3DSA:3.30.2090.10 181 278 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 SUPERFAMILY SSF82714 185 274 2.88E-20 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Gene3D G3DSA:3.30.70.1430 577 678 0.0 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Gene3D G3DSA:3.30.70.1430 40 827 0.0 T 11-10-2018 APT56_25765 23f220fb2290f01dea4d6cd1baed399c 1071 Gene3D G3DSA:1.20.1640.10 10 522 0.0 T 11-10-2018 APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 39 4.1E-9 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 9 20 4.1E-9 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 Gene3D G3DSA:3.30.70.920 46 129 1.4E-27 T 11-10-2018 APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 40 2.3E-16 T 11-10-2018 APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 SUPERFAMILY SSF46785 2 83 1.35E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 SUPERFAMILY SSF54909 54 140 2.28E-22 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 Pfam PF01037 Lrp/AsnC ligand binding domain 59 132 2.4E-23 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 SMART SM00344 2 102 3.3E-40 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_16430 3cd89e97be169a19c23f67ca6b4ea981 142 Gene3D G3DSA:1.10.10.10 1 45 1.6E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13430 a1b96a82dc22b502bdf01e616930bd62 508 Gene3D G3DSA:1.10.10.10 1 100 5.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13430 a1b96a82dc22b502bdf01e616930bd62 508 SUPERFAMILY SSF46894 2 97 2.83E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_13430 a1b96a82dc22b502bdf01e616930bd62 508 Pfam PF00486 Transcriptional regulatory protein, C terminal 20 95 6.7E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_13430 a1b96a82dc22b502bdf01e616930bd62 508 SMART SM00862 20 96 1.4E-12 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_13430 a1b96a82dc22b502bdf01e616930bd62 508 Gene3D G3DSA:1.25.40.10 236 449 1.7E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_21070 e4cb0a6bf98ed4675d3bd742b5c5f610 495 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 13 474 1.8E-230 T 11-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 APT56_21070 e4cb0a6bf98ed4675d3bd742b5c5f610 495 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 17 447 4.5E-117 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_21070 e4cb0a6bf98ed4675d3bd742b5c5f610 495 SUPERFAMILY SSF81442 15 471 4.19E-127 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_21070 e4cb0a6bf98ed4675d3bd742b5c5f610 495 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 208 263 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_21070 e4cb0a6bf98ed4675d3bd742b5c5f610 495 Gene3D G3DSA:1.20.210.10 7 475 8.2E-208 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 SMART SM00729 173 394 3.7E-57 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 30 466 3.5E-182 T 11-10-2018 APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 Pfam PF00919 Uncharacterized protein family UPF0004 30 130 3.6E-30 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 177 197 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 Gene3D G3DSA:3.80.30.20 171 407 4.8E-84 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 Pfam PF04055 Radical SAM superfamily 177 352 4.2E-30 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 Gene3D G3DSA:3.40.50.12160 29 163 2.1E-34 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 30 464 6.1E-151 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 SUPERFAMILY SSF102114 155 399 7.06E-60 T 11-10-2018 APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 Pfam PF01938 TRAM domain 406 466 8.3E-15 T 11-10-2018 IPR002792 TRAM domain APT56_22765 83ef79d973845860dd6d70ddcc56fcc3 477 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 29 467 74.655 T 11-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 APT56_02705 e8d700a1ed2b670b7fd568e1712992e2 288 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 55 273 1.6E-19 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_02705 e8d700a1ed2b670b7fd568e1712992e2 288 Gene3D G3DSA:3.40.190.10 153 239 1.4E-14 T 11-10-2018 APT56_02705 e8d700a1ed2b670b7fd568e1712992e2 288 SUPERFAMILY SSF53850 55 274 5.59E-26 T 11-10-2018 APT56_02705 e8d700a1ed2b670b7fd568e1712992e2 288 Gene3D G3DSA:3.40.190.10 44 152 9.1E-14 T 11-10-2018 APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 SUPERFAMILY SSF53850 90 292 1.81E-37 T 11-10-2018 APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 SUPERFAMILY SSF46785 1 111 8.09E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.1E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 Gene3D G3DSA:3.40.190.290 91 295 2.4E-44 T 11-10-2018 APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 Gene3D G3DSA:1.10.10.10 1 88 8.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04450 e4260769cd6a8b8fbff29fd16d062f3c 299 Pfam PF03466 LysR substrate binding domain 88 290 4.6E-42 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_20120 443759a097de991d39d3a8a6e6d2b8bb 257 Pfam PF02146 Sir2 family 27 207 8.1E-50 T 11-10-2018 IPR003000 Sirtuin family GO:0070403 APT56_20120 443759a097de991d39d3a8a6e6d2b8bb 257 Gene3D G3DSA:3.30.1600.10 36 177 1.3E-82 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily APT56_20120 443759a097de991d39d3a8a6e6d2b8bb 257 Gene3D G3DSA:3.40.50.1220 18 251 1.3E-82 T 11-10-2018 APT56_20120 443759a097de991d39d3a8a6e6d2b8bb 257 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 20 253 58.411 T 11-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 APT56_20120 443759a097de991d39d3a8a6e6d2b8bb 257 SUPERFAMILY SSF52467 11 254 2.44E-81 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_25215 e481271f65026729efd33aa3e2f8dd34 303 SUPERFAMILY SSF46785 5 116 2.56E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25215 e481271f65026729efd33aa3e2f8dd34 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 7.5E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25215 e481271f65026729efd33aa3e2f8dd34 303 Gene3D G3DSA:3.40.190.290 95 299 1.1E-37 T 11-10-2018 APT56_25215 e481271f65026729efd33aa3e2f8dd34 303 SUPERFAMILY SSF53850 93 298 2.32E-39 T 11-10-2018 APT56_25215 e481271f65026729efd33aa3e2f8dd34 303 Gene3D G3DSA:1.10.10.10 6 94 2.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25215 e481271f65026729efd33aa3e2f8dd34 303 Pfam PF03466 LysR substrate binding domain 92 296 5.5E-35 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_15440 734d105699fbb409eae8cc81525901d6 361 Gene3D G3DSA:2.40.50.100 236 343 1.3E-5 T 11-10-2018 APT56_15440 734d105699fbb409eae8cc81525901d6 361 Gene3D G3DSA:2.40.50.140 288 332 1.3E-5 T 11-10-2018 APT56_15440 734d105699fbb409eae8cc81525901d6 361 Pfam PF08402 TOBE domain 271 341 3.8E-5 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_15440 734d105699fbb409eae8cc81525901d6 361 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15440 734d105699fbb409eae8cc81525901d6 361 SUPERFAMILY SSF52540 7 239 4.26E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15440 734d105699fbb409eae8cc81525901d6 361 SMART SM00382 27 207 2.6E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15440 734d105699fbb409eae8cc81525901d6 361 SUPERFAMILY SSF50331 234 347 1.09E-18 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_15440 734d105699fbb409eae8cc81525901d6 361 Gene3D G3DSA:3.40.50.300 1 233 2.8E-53 T 11-10-2018 APT56_15440 734d105699fbb409eae8cc81525901d6 361 Pfam PF00005 ABC transporter 21 158 3.6E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_26095 9c6f2164797e487daff148753f557b29 267 Pfam PF01614 Bacterial transcriptional regulator 133 244 8.9E-11 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_26095 9c6f2164797e487daff148753f557b29 267 SMART SM00346 11 100 0.0016 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_26095 9c6f2164797e487daff148753f557b29 267 Gene3D G3DSA:3.30.450.40 83 252 6.0E-27 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_26095 9c6f2164797e487daff148753f557b29 267 Pfam PF09339 IclR helix-turn-helix domain 14 63 1.3E-12 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_26095 9c6f2164797e487daff148753f557b29 267 SUPERFAMILY SSF55781 75 245 7.85E-30 T 11-10-2018 APT56_26095 9c6f2164797e487daff148753f557b29 267 Gene3D G3DSA:1.10.10.10 11 76 4.8E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26095 9c6f2164797e487daff148753f557b29 267 SUPERFAMILY SSF46785 14 76 1.11E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 9.2E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 9.2E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 9.2E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 SUPERFAMILY SSF51735 11 253 7.25E-79 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.6E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.6E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 2.6E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.6E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.6E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.6E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 Gene3D G3DSA:3.40.50.720 8 254 2.0E-81 T 11-10-2018 APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 252 1.5E-64 T 11-10-2018 APT56_08315 746f048ca3315831b9fe72641b6ebc65 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_22450 3063312f9672a579777966c1d024f94e 323 SUPERFAMILY SSF53850 114 282 1.34E-8 T 11-10-2018 APT56_22450 3063312f9672a579777966c1d024f94e 323 PIRSF PIRSF017082 1 323 4.1E-89 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_22450 3063312f9672a579777966c1d024f94e 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 320 2.9E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_22450 3063312f9672a579777966c1d024f94e 323 Gene3D G3DSA:3.40.190.10 126 248 1.2E-112 T 11-10-2018 APT56_22450 3063312f9672a579777966c1d024f94e 323 Gene3D G3DSA:3.40.190.150 28 313 1.2E-112 T 11-10-2018 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 SMART SM00926 5 60 1.3E-20 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 SUPERFAMILY SSF50692 574 717 1.57E-48 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Gene3D G3DSA:2.40.40.20 591 718 6.7E-45 T 11-10-2018 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Pfam PF00175 Oxidoreductase NAD-binding domain 1197 1303 3.9E-18 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00369 Flavodoxin signature 873 892 2.5E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00369 Flavodoxin signature 849 859 2.5E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00369 Flavodoxin signature 817 828 2.5E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00369 Flavodoxin signature 769 782 2.5E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Pfam PF01568 Molydopterin dinucleotide binding domain 602 712 1.4E-36 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 SUPERFAMILY SSF63380 969 1186 1.7E-60 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Gene3D G3DSA:3.40.50.360 763 918 1.3E-43 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Gene3D G3DSA:2.20.25.90 6 57 2.2E-18 T 11-10-2018 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Gene3D G3DSA:3.40.50.80 1185 1339 5.6E-58 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Gene3D G3DSA:2.40.30.10 971 1179 3.6E-69 T 11-10-2018 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 SUPERFAMILY SSF53706 4 610 1.57E-181 T 11-10-2018 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Gene3D G3DSA:3.40.50.740 71 539 6.0E-186 T 11-10-2018 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Gene3D G3DSA:3.40.228.10 142 341 6.0E-186 T 11-10-2018 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 10 28 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 SUPERFAMILY SSF52343 1184 1339 3.01E-51 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 SUPERFAMILY SSF52218 766 909 2.79E-42 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Gene3D G3DSA:1.20.990.10 1018 1125 3.6E-69 T 11-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1196 1215 1.9E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1160 1169 1.9E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1288 1296 1.9E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1221 1230 1.9E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1008 1018 1.9E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1234 1245 1.9E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1265 1281 1.9E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1127 1134 1.9E-27 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Pfam PF00258 Flavodoxin 771 896 1.4E-24 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Pfam PF00667 FAD binding domain 969 1165 1.8E-31 T 11-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 6 54 4.9E-20 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_23765 1ca85e601823acc7ddcec7e400bd5d19 1339 Pfam PF00384 Molybdopterin oxidoreductase 83 487 3.8E-71 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_08410 873a9f33e3d43cec3cf9fca8c0894092 212 Pfam PF13590 Domain of unknown function (DUF4136) 36 199 1.5E-25 T 11-10-2018 IPR025411 Domain of unknown function DUF4136 APT56_08410 873a9f33e3d43cec3cf9fca8c0894092 212 Gene3D G3DSA:3.30.160.670 34 198 2.8E-8 T 11-10-2018 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 SMART SM00283 248 467 6.6E-38 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 Gene3D G3DSA:1.10.287.950 254 469 7.8E-49 T 11-10-2018 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 SUPERFAMILY SSF58104 264 460 1.44E-47 T 11-10-2018 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 Gene3D G3DSA:3.30.450.20 12 151 6.0E-26 T 11-10-2018 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 Gene3D G3DSA:3.30.450.20 152 253 3.3E-22 T 11-10-2018 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 SMART SM00091 144 212 0.035 T 11-10-2018 IPR000014 PAS domain APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 SMART SM00091 22 90 0.0025 T 11-10-2018 IPR000014 PAS domain APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 SUPERFAMILY SSF55785 155 257 1.5E-26 T 11-10-2018 IPR035965 PAS domain superfamily APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 SMART SM00086 217 259 2.3E-5 T 11-10-2018 IPR001610 PAC motif APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 SMART SM00086 95 137 1.0E-4 T 11-10-2018 IPR001610 PAC motif APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 Pfam PF08447 PAS fold 167 252 2.5E-16 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 Pfam PF08447 PAS fold 45 130 1.4E-16 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 324 351 2.1E-33 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 353 382 2.1E-33 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 2.1E-33 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 SUPERFAMILY SSF55785 33 138 4.36E-28 T 11-10-2018 IPR035965 PAS domain superfamily APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 31 142 3.1E-17 T 11-10-2018 IPR000014 PAS domain APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 154 265 1.1E-19 T 11-10-2018 IPR000014 PAS domain APT56_04720 8079bfcde6baf5ad0d6b61e9883ea22a 484 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 286 438 1.9E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 442 9.8E-111 T 11-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 Pfam PF13180 PDZ domain 215 283 6.9E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 Pfam PF13180 PDZ domain 124 180 2.6E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 SMART SM00228 112 184 1.9E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 SMART SM00228 208 275 0.0073 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 Gene3D G3DSA:2.30.42.10 218 303 8.2E-19 T 11-10-2018 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 SUPERFAMILY SSF50156 84 181 3.29E-16 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 Pfam PF02163 Peptidase family M50 7 428 7.5E-76 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 Gene3D G3DSA:2.30.42.10 124 217 4.2E-13 T 11-10-2018 APT56_12275 5c9b7bcaec089ba193bde3e8562cdb32 443 SUPERFAMILY SSF50156 219 284 2.89E-13 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_05985 b5f27d025dc3e6b486e3a0ad32ddb2d6 306 SUPERFAMILY SSF46785 14 122 2.12E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05985 b5f27d025dc3e6b486e3a0ad32ddb2d6 306 SUPERFAMILY SSF53850 101 302 6.24E-39 T 11-10-2018 APT56_05985 b5f27d025dc3e6b486e3a0ad32ddb2d6 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 19 75 2.3E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_05985 b5f27d025dc3e6b486e3a0ad32ddb2d6 306 Pfam PF03466 LysR substrate binding domain 100 302 1.3E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_05985 b5f27d025dc3e6b486e3a0ad32ddb2d6 306 Gene3D G3DSA:3.40.190.290 103 302 9.9E-40 T 11-10-2018 APT56_05985 b5f27d025dc3e6b486e3a0ad32ddb2d6 306 Gene3D G3DSA:1.10.10.10 14 98 1.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21100 28a6b03b31b774719afc3b7bbc5d6c04 257 SUPERFAMILY SSF53335 7 203 9.71E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_21100 28a6b03b31b774719afc3b7bbc5d6c04 257 Pfam PF08242 Methyltransferase domain 51 145 1.9E-14 T 11-10-2018 IPR013217 Methyltransferase type 12 APT56_21100 28a6b03b31b774719afc3b7bbc5d6c04 257 Gene3D G3DSA:3.40.50.150 11 175 6.9E-31 T 11-10-2018 APT56_18375 e1f7e80bbcbea2bd4084114b0cb2b7c3 283 Gene3D G3DSA:3.40.830.10 1 280 5.7E-83 T 11-10-2018 APT56_18375 e1f7e80bbcbea2bd4084114b0cb2b7c3 283 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 279 6.6E-68 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 APT56_18375 e1f7e80bbcbea2bd4084114b0cb2b7c3 283 SUPERFAMILY SSF53213 12 277 4.58E-52 T 11-10-2018 APT56_18375 e1f7e80bbcbea2bd4084114b0cb2b7c3 283 TIGRFAM TIGR02298 HpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1 281 1.2E-147 T 11-10-2018 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase GO:0008687 KEGG: 00350+1.13.11.15 APT56_15660 3c5519f25f411c941bcd39001ebd9090 316 Gene3D G3DSA:3.40.50.2020 14 140 2.1E-19 T 11-10-2018 APT56_15660 3c5519f25f411c941bcd39001ebd9090 316 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 22 247 7.2E-34 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT56_15660 3c5519f25f411c941bcd39001ebd9090 316 SUPERFAMILY SSF53271 60 247 7.67E-19 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APT56_15660 3c5519f25f411c941bcd39001ebd9090 316 Gene3D G3DSA:3.40.50.2020 141 282 1.0E-21 T 11-10-2018 APT56_15660 3c5519f25f411c941bcd39001ebd9090 316 SMART SM01400 5 111 5.9E-8 T 11-10-2018 APT56_15660 3c5519f25f411c941bcd39001ebd9090 316 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 22 108 8.6E-8 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT56_15660 3c5519f25f411c941bcd39001ebd9090 316 Pfam PF00156 Phosphoribosyl transferase domain 135 230 6.3E-10 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT56_14580 a884ce7f5601ab967e3dfc910da9e8df 233 SMART SM00382 26 212 5.4E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14580 a884ce7f5601ab967e3dfc910da9e8df 233 SUPERFAMILY SSF52540 2 231 8.36E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14580 a884ce7f5601ab967e3dfc910da9e8df 233 PIRSF PIRSF039137 1 233 3.6E-106 T 11-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 APT56_14580 a884ce7f5601ab967e3dfc910da9e8df 233 Pfam PF00005 ABC transporter 17 161 1.6E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14580 a884ce7f5601ab967e3dfc910da9e8df 233 Gene3D G3DSA:3.40.50.300 1 233 7.6E-64 T 11-10-2018 APT56_14580 a884ce7f5601ab967e3dfc910da9e8df 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 SUPERFAMILY SSF81301 518 793 2.55E-73 T 11-10-2018 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 2 922 18.496 T 11-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Pfam PF08335 GlnD PII-uridylyltransferase 805 899 5.0E-10 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Pfam PF08335 GlnD PII-uridylyltransferase 282 427 3.4E-40 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 SUPERFAMILY SSF81593 272 427 3.84E-37 T 11-10-2018 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 SUPERFAMILY SSF81593 793 921 4.79E-33 T 11-10-2018 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Gene3D G3DSA:1.20.120.1510 445 552 4.1E-15 T 11-10-2018 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 SUPERFAMILY SSF81301 6 271 3.6E-65 T 11-10-2018 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Gene3D G3DSA:1.20.120.330 790 922 8.9E-41 T 11-10-2018 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 8 244 4.9E-58 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 544 783 1.2E-63 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Gene3D G3DSA:1.20.120.330 270 429 4.5E-50 T 11-10-2018 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Gene3D G3DSA:3.30.460.100 14 256 5.0E-63 T 11-10-2018 APT56_09320 962eed94004a3b7b18e85ec4056b55d2 922 Gene3D G3DSA:3.30.460.100 553 789 8.1E-74 T 11-10-2018 APT56_01490 d6f071aeb96660377b96910462ea8091 203 SUPERFAMILY SSF55729 49 180 1.66E-18 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_01490 d6f071aeb96660377b96910462ea8091 203 Gene3D G3DSA:3.40.630.30 12 193 3.2E-16 T 11-10-2018 APT56_01490 d6f071aeb96660377b96910462ea8091 203 Pfam PF00583 Acetyltransferase (GNAT) family 103 172 3.8E-8 T 11-10-2018 IPR000182 GNAT domain APT56_16070 051da4a9a51550b225c5734ba680abb3 1099 Pfam PF05650 Domain of unknown function (DUF802) 329 380 1.6E-18 T 11-10-2018 IPR008520 Domain of unknown function DUF802 APT56_16070 051da4a9a51550b225c5734ba680abb3 1099 Pfam PF05650 Domain of unknown function (DUF802) 776 828 2.2E-12 T 11-10-2018 IPR008520 Domain of unknown function DUF802 APT56_16070 051da4a9a51550b225c5734ba680abb3 1099 Pfam PF05650 Domain of unknown function (DUF802) 645 697 1.4E-10 T 11-10-2018 IPR008520 Domain of unknown function DUF802 APT56_16070 051da4a9a51550b225c5734ba680abb3 1099 Pfam PF05650 Domain of unknown function (DUF802) 383 435 2.2E-15 T 11-10-2018 IPR008520 Domain of unknown function DUF802 APT56_16070 051da4a9a51550b225c5734ba680abb3 1099 Pfam PF05650 Domain of unknown function (DUF802) 514 566 2.8E-15 T 11-10-2018 IPR008520 Domain of unknown function DUF802 APT56_22230 4e4b50c0b05f13b0546accc0982017cc 236 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_22230 4e4b50c0b05f13b0546accc0982017cc 236 SMART SM00382 29 213 9.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22230 4e4b50c0b05f13b0546accc0982017cc 236 Gene3D G3DSA:3.40.50.300 2 236 3.0E-60 T 11-10-2018 APT56_22230 4e4b50c0b05f13b0546accc0982017cc 236 Pfam PF00005 ABC transporter 20 164 2.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_22230 4e4b50c0b05f13b0546accc0982017cc 236 SUPERFAMILY SSF52540 4 232 5.22E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25310 4c2659a1401073faa9728217e720c944 640 Pfam PF00664 ABC transporter transmembrane region 35 290 5.8E-8 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_25310 4c2659a1401073faa9728217e720c944 640 Pfam PF00005 ABC transporter 357 509 5.9E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_25310 4c2659a1401073faa9728217e720c944 640 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 24 568 1.4E-221 T 11-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 APT56_25310 4c2659a1401073faa9728217e720c944 640 Gene3D G3DSA:3.40.50.300 332 574 1.1E-66 T 11-10-2018 APT56_25310 4c2659a1401073faa9728217e720c944 640 SMART SM00382 365 556 1.5E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_25310 4c2659a1401073faa9728217e720c944 640 SUPERFAMILY SSF90123 21 326 7.85E-42 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_25310 4c2659a1401073faa9728217e720c944 640 Gene3D G3DSA:1.20.1560.10 17 325 5.2E-31 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_25310 4c2659a1401073faa9728217e720c944 640 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_25310 4c2659a1401073faa9728217e720c944 640 SUPERFAMILY SSF52540 330 569 3.05E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 SMART SM00387 331 440 3.7E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 SMART SM00304 168 221 7.1E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 SUPERFAMILY SSF55874 277 431 2.88E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 6 432 1.4E-103 T 11-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 SUPERFAMILY SSF47384 205 288 1.43E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 Gene3D G3DSA:3.30.565.10 298 441 4.9E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 Gene3D G3DSA:1.10.287.130 172 288 1.7E-21 T 11-10-2018 APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 332 429 2.6E-12 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 288 4.4E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 SMART SM00388 222 288 1.7E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 8.9E-5 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 396 8.9E-5 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_01630 4c3711a6d3083bc19667b6ddd3a21e36 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 8.9E-5 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13425 025b23b795d68ed432d906a417d8cf6a 742 Pfam PF03971 Monomeric isocitrate dehydrogenase 6 738 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 APT56_13425 025b23b795d68ed432d906a417d8cf6a 742 SUPERFAMILY SSF53659 4 741 0.0 T 11-10-2018 APT56_13425 025b23b795d68ed432d906a417d8cf6a 742 PIRSF PIRSF009407 1 742 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 APT56_13425 025b23b795d68ed432d906a417d8cf6a 742 Gene3D G3DSA:3.40.718.10 130 291 2.8E-5 T 11-10-2018 APT56_13425 025b23b795d68ed432d906a417d8cf6a 742 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 4 741 0.0 T 11-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 APT56_08650 eb176c4ab0e957471f9ae753f305bb5b 524 SMART SM00267 351 523 1.3E-55 T 11-10-2018 IPR000160 GGDEF domain APT56_08650 eb176c4ab0e957471f9ae753f305bb5b 524 SUPERFAMILY SSF55073 370 521 3.22E-45 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_08650 eb176c4ab0e957471f9ae753f305bb5b 524 Gene3D G3DSA:3.30.450.20 43 182 7.8E-6 T 11-10-2018 APT56_08650 eb176c4ab0e957471f9ae753f305bb5b 524 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 362 521 1.4E-43 T 11-10-2018 IPR000160 GGDEF domain APT56_08650 eb176c4ab0e957471f9ae753f305bb5b 524 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 518 4.3E-42 T 11-10-2018 IPR000160 GGDEF domain APT56_08650 eb176c4ab0e957471f9ae753f305bb5b 524 Gene3D G3DSA:3.30.70.270 359 523 5.1E-53 T 11-10-2018 APT56_20110 4e781d5083c5499332a42b9b9afe92b2 254 Pfam PF09339 IclR helix-turn-helix domain 5 55 4.8E-11 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_20110 4e781d5083c5499332a42b9b9afe92b2 254 SMART SM00346 2 93 1.1E-17 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_20110 4e781d5083c5499332a42b9b9afe92b2 254 SUPERFAMILY SSF46785 3 75 7.01E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20110 4e781d5083c5499332a42b9b9afe92b2 254 SUPERFAMILY SSF55781 75 247 1.11E-51 T 11-10-2018 APT56_20110 4e781d5083c5499332a42b9b9afe92b2 254 Gene3D G3DSA:1.10.10.10 3 74 1.2E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20110 4e781d5083c5499332a42b9b9afe92b2 254 Gene3D G3DSA:3.30.450.40 75 250 1.8E-58 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_20110 4e781d5083c5499332a42b9b9afe92b2 254 Pfam PF01614 Bacterial transcriptional regulator 121 243 3.1E-29 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_14150 9e80c603e0cacdb1606588bee58ed301 334 Gene3D G3DSA:1.10.443.10 131 312 4.2E-38 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APT56_14150 9e80c603e0cacdb1606588bee58ed301 334 SUPERFAMILY SSF56349 132 324 2.24E-34 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT56_14150 9e80c603e0cacdb1606588bee58ed301 334 SUPERFAMILY SSF47823 3 127 2.98E-11 T 11-10-2018 APT56_14150 9e80c603e0cacdb1606588bee58ed301 334 Pfam PF00589 Phage integrase family 136 311 1.8E-14 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT56_14150 9e80c603e0cacdb1606588bee58ed301 334 Gene3D G3DSA:1.10.150.130 1 129 8.5E-15 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APT56_26960 2011b0cfad2d7ae8622e867ad7d19e83 407 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 18 393 6.9E-141 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 APT56_26960 2011b0cfad2d7ae8622e867ad7d19e83 407 Gene3D G3DSA:1.20.1530.10 12 400 1.5E-147 T 11-10-2018 IPR023171 Na/H antiporter domain superfamily APT56_26960 2011b0cfad2d7ae8622e867ad7d19e83 407 Pfam PF06965 Na+/H+ antiporter 1 17 393 4.1E-148 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 APT56_26960 2011b0cfad2d7ae8622e867ad7d19e83 407 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 15 402 23.55 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 APT56_11390 34749f1aa10035bb35d379a211c511b3 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 6.7E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_11390 34749f1aa10035bb35d379a211c511b3 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 6.7E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_11390 34749f1aa10035bb35d379a211c511b3 196 Pfam PF16925 Bacterial transcriptional repressor C-terminal 93 165 6.4E-9 T 11-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal APT56_11390 34749f1aa10035bb35d379a211c511b3 196 SUPERFAMILY SSF48498 76 178 5.62E-26 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_11390 34749f1aa10035bb35d379a211c511b3 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 2.3E-14 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_11390 34749f1aa10035bb35d379a211c511b3 196 Gene3D G3DSA:1.10.10.60 1 64 1.6E-24 T 11-10-2018 APT56_11390 34749f1aa10035bb35d379a211c511b3 196 Gene3D G3DSA:1.10.357.10 65 195 1.0E-29 T 11-10-2018 APT56_11390 34749f1aa10035bb35d379a211c511b3 196 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 53 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_11390 34749f1aa10035bb35d379a211c511b3 196 SUPERFAMILY SSF46689 6 73 7.18E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 PIRSF PIRSF002583 1 629 5.7E-216 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 PRINTS PR00775 90kDa heat shock protein signature 123 145 3.1E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 PRINTS PR00775 90kDa heat shock protein signature 8 28 3.1E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 PRINTS PR00775 90kDa heat shock protein signature 191 209 3.1E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 PRINTS PR00775 90kDa heat shock protein signature 96 113 3.1E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 PRINTS PR00775 90kDa heat shock protein signature 78 95 3.1E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 PRINTS PR00775 90kDa heat shock protein signature 29 51 3.1E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 PRINTS PR00775 90kDa heat shock protein signature 173 190 3.1E-60 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 183 3.0E-11 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 SMART SM00387 30 185 2.9E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 Gene3D G3DSA:3.40.50.11260 407 498 1.3E-32 T 11-10-2018 APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 SUPERFAMILY SSF54211 235 490 1.06E-99 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 11-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 Gene3D G3DSA:3.30.230.80 234 406 5.7E-68 T 11-10-2018 APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 SUPERFAMILY SSF55874 7 217 6.16E-68 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 628 32.689 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 Gene3D G3DSA:3.30.565.10 1 230 2.7E-76 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 Pfam PF00183 Hsp90 protein 218 627 1.5E-129 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 SUPERFAMILY SSF110942 516 628 2.62E-34 T 11-10-2018 IPR037196 HSP90, C-terminal domain APT56_25395 3d123128b4b57f3c67619aeb7c6749e1 629 Gene3D G3DSA:1.20.120.790 499 629 3.7E-42 T 11-10-2018 IPR037196 HSP90, C-terminal domain APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SUPERFAMILY SSF50249 618 695 7.31E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SUPERFAMILY SSF55666 145 236 3.51E-31 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Gene3D G3DSA:3.30.1370.10 555 626 1.1E-20 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 PIRSF PIRSF005499 1 718 5.6E-297 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Gene3D G3DSA:3.30.230.70 233 554 1.6E-117 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SUPERFAMILY SSF54791 560 644 1.67E-22 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 3.8E-20 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Pfam PF01138 3' exoribonuclease family, domain 1 329 461 1.6E-24 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 698 30.221 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Pfam PF00575 S1 RNA binding domain 624 695 6.6E-18 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SUPERFAMILY SSF46915 239 326 1.33E-15 T 11-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Gene3D G3DSA:3.30.230.70 1 229 2.2E-81 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 696 0.0 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SUPERFAMILY SSF54211 2 144 5.57E-52 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SMART SM00316 625 695 5.4E-23 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SUPERFAMILY SSF54211 299 493 3.64E-50 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SUPERFAMILY SSF55666 458 565 3.51E-28 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Pfam PF00013 KH domain 562 618 2.8E-11 T 11-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Pfam PF03725 3' exoribonuclease family, domain 2 466 533 4.9E-5 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Pfam PF03725 3' exoribonuclease family, domain 2 147 205 1.5E-11 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 SMART SM00322 557 622 1.8E-13 T 11-10-2018 IPR004087 K Homology domain GO:0003676 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Gene3D G3DSA:2.40.50.140 627 698 9.2E-27 T 11-10-2018 APT56_05905 9d7ab5e7026c8ba7e438a085bce4d5c9 718 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 325 6.2E-18 T 11-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APT56_15495 a4d1fbd9c0a03e7b86823d0e1b59240d 239 SUPERFAMILY SSF46894 151 237 2.52E-11 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_15495 a4d1fbd9c0a03e7b86823d0e1b59240d 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 235 1.6E-5 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_15495 a4d1fbd9c0a03e7b86823d0e1b59240d 239 SUPERFAMILY SSF52172 15 123 1.48E-6 T 11-10-2018 IPR011006 CheY-like superfamily APT56_15495 a4d1fbd9c0a03e7b86823d0e1b59240d 239 Gene3D G3DSA:1.10.10.10 132 238 1.7E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15495 a4d1fbd9c0a03e7b86823d0e1b59240d 239 SMART SM00862 161 235 0.0095 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_12110 c4e5bb0eea4caca251c1dacbd3e3c44b 247 Pfam PF02108 Flagellar assembly protein FliH 107 233 3.5E-39 T 11-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE APT56_12110 c4e5bb0eea4caca251c1dacbd3e3c44b 247 PRINTS PR01003 Flagellar assembly protein FliH signature 198 214 4.5E-16 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 APT56_12110 c4e5bb0eea4caca251c1dacbd3e3c44b 247 PRINTS PR01003 Flagellar assembly protein FliH signature 215 240 4.5E-16 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 APT56_12110 c4e5bb0eea4caca251c1dacbd3e3c44b 247 PRINTS PR01003 Flagellar assembly protein FliH signature 129 146 4.5E-16 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 APT56_12110 c4e5bb0eea4caca251c1dacbd3e3c44b 247 PRINTS PR01003 Flagellar assembly protein FliH signature 67 89 4.5E-16 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 APT56_12110 c4e5bb0eea4caca251c1dacbd3e3c44b 247 PRINTS PR01003 Flagellar assembly protein FliH signature 170 197 4.5E-16 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 APT56_12110 c4e5bb0eea4caca251c1dacbd3e3c44b 247 PRINTS PR01003 Flagellar assembly protein FliH signature 90 108 4.5E-16 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 Gene3D G3DSA:1.10.10.10 1 92 2.4E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 SUPERFAMILY SSF53850 89 289 5.07E-31 T 11-10-2018 APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.7E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 Pfam PF03466 LysR substrate binding domain 87 287 1.3E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 SUPERFAMILY SSF46785 1 110 7.48E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 Gene3D G3DSA:3.40.190.10 93 274 3.3E-23 T 11-10-2018 APT56_04890 8cbfc1f78496be0cbe455ae77f61eb33 296 Gene3D G3DSA:3.40.190.10 164 261 3.3E-23 T 11-10-2018 APT56_26255 a0b936bfba83c2ca91c5af1af43d4686 302 SUPERFAMILY SSF53474 38 297 2.89E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_26255 a0b936bfba83c2ca91c5af1af43d4686 302 Pfam PF00561 alpha/beta hydrolase fold 54 284 1.8E-21 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_26255 a0b936bfba83c2ca91c5af1af43d4686 302 Gene3D G3DSA:3.40.50.1820 24 298 6.0E-78 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_20525 4665e2b2f943538c61a12f5df46a8964 420 Gene3D G3DSA:1.20.1250.20 10 403 1.7E-24 T 11-10-2018 APT56_20525 4665e2b2f943538c61a12f5df46a8964 420 SUPERFAMILY SSF103473 4 404 1.96E-32 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_20525 4665e2b2f943538c61a12f5df46a8964 420 Pfam PF07690 Major Facilitator Superfamily 17 367 4.3E-16 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_03465 07373ee1fde429aabfa25e905d98b2e7 288 Pfam PF02653 Branched-chain amino acid transport system / permease component 13 263 2.4E-37 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_05965 d90cdae5e34b419560f18d5607fabb6d 307 SUPERFAMILY SSF56317 1 296 5.89E-70 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_05965 d90cdae5e34b419560f18d5607fabb6d 307 ProSitePatterns PS00921 Nitrilases / cyanide hydratase active site signature. 161 174 - T 11-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 APT56_05965 d90cdae5e34b419560f18d5607fabb6d 307 Pfam PF00795 Carbon-nitrogen hydrolase 5 277 2.1E-51 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_05965 d90cdae5e34b419560f18d5607fabb6d 307 Gene3D G3DSA:3.60.110.10 1 281 6.9E-93 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 SUPERFAMILY SSF53271 252 483 1.19E-72 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 2.6E-157 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 Pfam PF00156 Phosphoribosyl transferase domain 285 395 4.6E-8 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 Pfam PF13522 Glutamine amidotransferase domain 64 210 3.8E-16 T 11-10-2018 APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 PIRSF PIRSF000485 1 482 2.6E-155 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 45.311 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 Gene3D G3DSA:3.40.50.2020 279 443 1.3E-147 T 11-10-2018 APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 Gene3D G3DSA:3.60.20.10 2 414 1.3E-147 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_12205 75bf61613beb1bb8ceebfc77f97d6f11 506 SUPERFAMILY SSF56235 2 259 1.63E-68 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_15925 f199f3de85d5bbf1091ea51008c4547a 529 Gene3D G3DSA:3.40.50.1010 1 156 3.1E-36 T 11-10-2018 APT56_15925 f199f3de85d5bbf1091ea51008c4547a 529 Pfam PF01936 NYN domain 9 152 7.5E-33 T 11-10-2018 IPR021139 NYN domain, limkain-b1-type APT56_13805 fd02fd47a057134cebc526c5b809fa9f 173 SUPERFAMILY SSF52218 1 123 4.32E-11 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_13805 fd02fd47a057134cebc526c5b809fa9f 173 Gene3D G3DSA:3.40.50.360 1 147 2.9E-13 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 SUPERFAMILY SSF51735 9 254 5.3E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 254 1.3E-62 T 11-10-2018 APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 Gene3D G3DSA:3.40.50.720 3 258 9.7E-80 T 11-10-2018 APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 3.8E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 3.8E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.8E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.8E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.8E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19645 2b02f5cf3055b482d3e08345468a6b3a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.8E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 86 2.2E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 2.2E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 136 156 2.2E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 102 2.2E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 ProSitePatterns PS01117 MarR-type HTH domain signature. 85 119 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 Pfam PF01047 MarR family 52 111 6.8E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 SMART SM00347 43 146 4.9E-26 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 SUPERFAMILY SSF46785 11 157 1.49E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21485 52b5a9b8bc6704eab1693fc984add032 170 Gene3D G3DSA:1.10.10.10 1 158 1.2E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03895 6a11ad2ee926a74b96e75bcb812ba975 153 Pfam PF00075 RNase H 9 147 3.5E-51 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 APT56_03895 6a11ad2ee926a74b96e75bcb812ba975 153 SUPERFAMILY SSF53098 10 148 1.52E-58 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_03895 6a11ad2ee926a74b96e75bcb812ba975 153 Hamap MF_00042 Ribonuclease H [rnhA]. 8 153 33.833 T 11-10-2018 IPR022892 Ribonuclease HI GO:0004523 APT56_03895 6a11ad2ee926a74b96e75bcb812ba975 153 Gene3D G3DSA:3.30.420.10 4 152 5.3E-61 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_15615 0550e15a8e21a4f0cc016f386ee024e6 350 Pfam PF02743 Cache domain 109 293 2.1E-12 T 11-10-2018 IPR033479 Double Cache domain 1 APT56_15615 0550e15a8e21a4f0cc016f386ee024e6 350 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 25 52 2.6E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_15615 0550e15a8e21a4f0cc016f386ee024e6 350 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 54 83 2.6E-8 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_15615 0550e15a8e21a4f0cc016f386ee024e6 350 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 9 75 1.0E-13 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_15615 0550e15a8e21a4f0cc016f386ee024e6 350 Gene3D G3DSA:3.30.450.20 127 251 2.2E-7 T 11-10-2018 APT56_15615 0550e15a8e21a4f0cc016f386ee024e6 350 Gene3D G3DSA:1.10.287.950 1 124 2.9E-19 T 11-10-2018 APT56_15615 0550e15a8e21a4f0cc016f386ee024e6 350 SUPERFAMILY SSF58104 6 79 4.84E-18 T 11-10-2018 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 SUPERFAMILY SSF55257 5 229 1.08E-31 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 151 4.8E-24 T 11-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 255 325 1.0E-34 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 SMART SM00662 21 231 2.9E-99 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 SUPERFAMILY SSF47789 250 322 1.07E-26 T 11-10-2018 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 Gene3D G3DSA:3.30.1360.10 18 224 4.2E-82 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 22 315 7.4E-106 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 SUPERFAMILY SSF56553 51 175 2.35E-42 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 Gene3D G3DSA:2.170.120.12 51 174 4.2E-82 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 250 307 9.8E-25 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 3 316 35.569 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 Gene3D G3DSA:1.10.150.20 244 327 1.2E-36 T 11-10-2018 APT56_27665 1ca21a7e104b7cf51eea8e7fdcf4a92f 328 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 27 224 7.3E-23 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_02570 ed9a414a80835044d849469254f113ea 183 Gene3D G3DSA:1.10.260.40 1 78 2.7E-18 T 11-10-2018 APT56_02570 ed9a414a80835044d849469254f113ea 183 SMART SM00530 10 65 3.6E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_02570 ed9a414a80835044d849469254f113ea 183 SUPERFAMILY SSF47413 3 68 4.22E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_02570 ed9a414a80835044d849469254f113ea 183 Gene3D G3DSA:2.60.120.10 95 183 2.9E-11 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_02570 ed9a414a80835044d849469254f113ea 183 Pfam PF01381 Helix-turn-helix 13 65 7.2E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_02570 ed9a414a80835044d849469254f113ea 183 SUPERFAMILY SSF51182 51 179 7.13E-19 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_01500 d81c6ffadc8694946f469531cdfd3f1f 327 Pfam PF08908 Domain of unknown function (DUF1852) 1 323 1.1E-186 T 11-10-2018 IPR015004 Protein of unknown function DUF1852 APT56_01500 d81c6ffadc8694946f469531cdfd3f1f 327 PIRSF PIRSF034367 1 327 1.4E-198 T 11-10-2018 IPR015004 Protein of unknown function DUF1852 APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 Pfam PF07729 FCD domain 102 224 3.6E-25 T 11-10-2018 IPR011711 GntR, C-terminal APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 SUPERFAMILY SSF48008 101 233 3.66E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 Gene3D G3DSA:1.10.10.10 10 80 4.0E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 Gene3D G3DSA:1.20.120.530 100 235 1.9E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 1.2E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 1.2E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 SMART SM00345 18 77 2.8E-23 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 SMART SM00895 99 226 9.0E-20 T 11-10-2018 IPR011711 GntR, C-terminal APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 SUPERFAMILY SSF46785 8 81 2.89E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18325 7a79c9a661a893b9596ff9b1a2f3f8d6 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 7.0E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SMART SM00825 Beta-ketoacyl synthase 1514 1941 7.4E-217 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF51735 3004 3181 1.18E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF14765 Polyketide synthase dehydratase 2416 2696 3.9E-56 T 11-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF47336 1420 1493 8.64E-19 T 11-10-2018 IPR036736 ACP-like superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3223 3403 8.9E-66 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF47336 3505 3594 7.85E-16 T 11-10-2018 IPR036736 ACP-like superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF50129 2910 3037 1.73E-29 T 11-10-2018 IPR011032 GroES-like superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF00550 Phosphopantetheine attachment site 1428 1492 1.3E-11 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF00550 Phosphopantetheine attachment site 3512 3579 3.2E-10 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF53901 1509 1937 8.13E-101 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF51735 3638 3904 3.82E-28 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF13649 Methyltransferase domain 1038 1114 1.5E-6 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SMART SM00823 Phosphopantetheine attachment site 3511 3583 7.6E-21 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SMART SM00823 Phosphopantetheine attachment site 1427 1496 1.7E-6 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF51735 3220 3459 4.64E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SMART SM00829 2907 3210 1.5E-156 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF55048 2176 2242 5.49E-12 T 11-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF02911 Formyl transferase, C-terminal domain 157 250 3.4E-7 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:1.10.1200.10 3491 3584 5.4E-24 T 11-10-2018 IPR036736 ACP-like superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF00501 AMP-binding enzyme 534 925 2.9E-100 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF50486 157 264 1.53E-10 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SMART SM00826 2416 2577 1.3E-47 T 11-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF13602 Zinc-binding dehydrogenase 3083 3210 5.0E-20 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.40.50.720 3217 3471 7.2E-76 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.10.129.110 2406 2700 2.0E-69 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF08659 KR domain 3223 3401 3.6E-67 T 11-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 TIGRFAM TIGR01746 Thioester-redct: thioester reductase domain 3639 3984 1.4E-64 T 11-10-2018 IPR010080 Thioester reductase-like domain APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF52777 284 497 4.89E-6 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.40.50.11460 2706 2885 3.7E-27 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF07993 Male sterility protein 3641 3869 1.5E-50 T 11-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.30.300.30 1342 1417 1.5E-13 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 1771 1888 1.1E-42 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.40.50.12230 1 264 1.1E-46 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 2050 2351 1.1E-109 T 11-10-2018 IPR020801 Polyketide synthase, acyl transferase domain APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SMART SM01294 3512 3579 5.1E-4 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 ProSitePatterns PS00455 Putative AMP-binding domain signature. 676 687 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.90.180.10 2889 3212 1.2E-111 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF56801 496 1439 1.31E-150 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.40.50.720 3623 3989 1.6E-69 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:1.10.1200.10 1419 1499 2.3E-23 T 11-10-2018 IPR036736 ACP-like superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.40.366.10 2048 2354 1.6E-149 T 11-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF53335 1005 1142 5.47E-16 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1512 1763 7.5E-87 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.40.47.10 1504 1958 1.4E-189 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF53328 1 152 4.45E-24 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF51735 2703 2886 2.23E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.40.50.150 1005 1186 9.6E-25 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.30.70.3290 1959 2399 1.6E-149 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.30.559.30 282 520 2.6E-8 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 1891 2004 8.1E-15 T 11-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 555 949 6.2E-128 T 11-10-2018 IPR010071 Amino acid adenylation domain APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3538 3553 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.30.300.30 920 985 6.5E-11 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Gene3D G3DSA:3.40.50.12780 522 919 1.9E-129 T 11-10-2018 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF00698 Acyl transferase domain 2050 2370 7.3E-52 T 11-10-2018 IPR014043 Acyl transferase APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 Pfam PF00551 Formyl transferase 24 115 3.4E-7 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_19015 e239a5de54f512ea72a121a7bc6bc8a6 4005 SUPERFAMILY SSF52151 2046 2343 3.92E-68 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 451 2.5E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 Gene3D G3DSA:1.10.287.130 185 302 1.4E-21 T 11-10-2018 APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 SUPERFAMILY SSF47384 218 301 1.59E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 301 1.2E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 SMART SM00387 344 455 1.6E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 SMART SM00388 235 301 1.1E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 SUPERFAMILY SSF55874 290 451 4.32E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 409 5.0E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 5.0E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 5.0E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 SMART SM00304 181 234 3.7E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 Gene3D G3DSA:3.30.565.10 304 452 3.0E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_02615 d7aacac3344b7f8e47b6048ea938beb5 466 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 7 447 2.5E-121 T 11-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 APT56_06650 876e3bee193aae89ae3de1640f0aeaa3 213 Gene3D G3DSA:3.30.70.20 70 150 1.3E-20 T 11-10-2018 APT56_06650 876e3bee193aae89ae3de1640f0aeaa3 213 Pfam PF14697 4Fe-4S dicluster domain 79 133 1.1E-17 T 11-10-2018 APT56_06650 876e3bee193aae89ae3de1640f0aeaa3 213 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 116 127 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_06650 876e3bee193aae89ae3de1640f0aeaa3 213 Pfam PF04060 Putative Fe-S cluster 14 46 4.5E-14 T 11-10-2018 IPR007202 4Fe-4S domain GO:0051536 APT56_06650 876e3bee193aae89ae3de1640f0aeaa3 213 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 3 142 2.9E-64 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 APT56_06650 876e3bee193aae89ae3de1640f0aeaa3 213 Gene3D G3DSA:3.20.20.20 7 69 1.6E-14 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_06650 876e3bee193aae89ae3de1640f0aeaa3 213 SUPERFAMILY SSF54862 8 135 2.09E-28 T 11-10-2018 APT56_23145 c8f1ea4cf8af67aadb4482cb348a0b20 262 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_23145 c8f1ea4cf8af67aadb4482cb348a0b20 262 SUPERFAMILY SSF52540 2 235 9.35E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_23145 c8f1ea4cf8af67aadb4482cb348a0b20 262 Gene3D G3DSA:3.40.50.300 1 261 8.4E-67 T 11-10-2018 APT56_23145 c8f1ea4cf8af67aadb4482cb348a0b20 262 SMART SM00382 27 220 1.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23145 c8f1ea4cf8af67aadb4482cb348a0b20 262 Pfam PF00005 ABC transporter 18 172 1.8E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 SUPERFAMILY SSF50249 2 124 1.29E-52 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 PRINTS PR01034 Ribosomal protein S12 signature 58 77 6.1E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 PRINTS PR01034 Ribosomal protein S12 signature 77 94 6.1E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 PRINTS PR01034 Ribosomal protein S12 signature 110 122 6.1E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 PRINTS PR01034 Ribosomal protein S12 signature 27 42 6.1E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 PRINTS PR01034 Ribosomal protein S12 signature 42 57 6.1E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 PRINTS PR01034 Ribosomal protein S12 signature 94 110 6.1E-61 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 PIRSF PIRSF002133 1 124 3.8E-55 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 Gene3D G3DSA:2.40.50.140 1 125 7.2E-63 T 11-10-2018 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 Pfam PF00164 Ribosomal protein S12/S23 15 123 3.6E-43 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 3.0E-69 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27870 b4927f9ef75b6cea3c5c5f0877090e41 125 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.348 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_07685 40349f4ca1ecfb5559d3c688a879e058 354 Pfam PF00005 ABC transporter 18 164 6.0E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_07685 40349f4ca1ecfb5559d3c688a879e058 354 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 2.4E-120 T 11-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 APT56_07685 40349f4ca1ecfb5559d3c688a879e058 354 Gene3D G3DSA:3.40.50.300 2 281 4.2E-82 T 11-10-2018 APT56_07685 40349f4ca1ecfb5559d3c688a879e058 354 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_07685 40349f4ca1ecfb5559d3c688a879e058 354 Pfam PF12857 TOBE-like domain 287 345 1.0E-14 T 11-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 APT56_07685 40349f4ca1ecfb5559d3c688a879e058 354 SMART SM00382 27 214 1.2E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_07685 40349f4ca1ecfb5559d3c688a879e058 354 SUPERFAMILY SSF50331 240 349 3.57E-5 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_07685 40349f4ca1ecfb5559d3c688a879e058 354 SUPERFAMILY SSF52540 3 243 3.46E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02940 883697d3e4907a942bd1551bd6f95d3c 332 SUPERFAMILY SSF53850 122 294 6.04E-11 T 11-10-2018 APT56_02940 883697d3e4907a942bd1551bd6f95d3c 332 PIRSF PIRSF017082 1 332 1.0E-85 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02940 883697d3e4907a942bd1551bd6f95d3c 332 Gene3D G3DSA:3.40.190.10 133 257 7.7E-106 T 11-10-2018 APT56_02940 883697d3e4907a942bd1551bd6f95d3c 332 Gene3D G3DSA:3.40.190.150 35 322 7.7E-106 T 11-10-2018 APT56_02940 883697d3e4907a942bd1551bd6f95d3c 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 329 7.1E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04215 1c79459c9e29e9467f32acc16acb2d40 561 Pfam PF00920 Dehydratase family 36 554 9.7E-203 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_04215 1c79459c9e29e9467f32acc16acb2d40 561 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 5 557 44.011 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_04215 1c79459c9e29e9467f32acc16acb2d40 561 SUPERFAMILY SSF143975 3 378 1.2E-131 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_04215 1c79459c9e29e9467f32acc16acb2d40 561 Gene3D G3DSA:3.50.30.80 379 528 4.0E-52 T 11-10-2018 APT56_04215 1c79459c9e29e9467f32acc16acb2d40 561 SUPERFAMILY SSF52016 380 558 1.26E-57 T 11-10-2018 APT56_04215 1c79459c9e29e9467f32acc16acb2d40 561 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 557 2.8E-226 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_04215 1c79459c9e29e9467f32acc16acb2d40 561 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 465 476 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_04215 1c79459c9e29e9467f32acc16acb2d40 561 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 123 133 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 311 337 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 70 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 33 49 2.2E-64 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 SUPERFAMILY SSF53850 28 366 1.53E-96 T 11-10-2018 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 Pfam PF13416 Bacterial extracellular solute-binding protein 45 332 1.6E-36 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 Gene3D G3DSA:3.40.190.10 30 335 1.4E-129 T 11-10-2018 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 Gene3D G3DSA:3.40.190.10 134 360 1.4E-129 T 11-10-2018 APT56_08970 ef0ea0a349f97610dbd074528ab581cc 367 PIRSF PIRSF019574 1 367 5.9E-141 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 515 541 3.2E-4 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 280 5.5E-4 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 SUPERFAMILY SSF52540 286 535 1.45E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 Pfam PF00005 ABC transporter 35 193 1.4E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 SUPERFAMILY SSF52540 20 265 9.49E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 Pfam PF00005 ABC transporter 315 463 9.5E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 SMART SM00382 322 513 1.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 SMART SM00382 43 243 1.3E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 ProSitePatterns PS00211 ABC transporters family signature. 436 450 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 Gene3D G3DSA:3.40.50.300 14 286 9.5E-84 T 11-10-2018 APT56_24745 b38fd739d71ef9660b10e7e99ca32f73 561 Gene3D G3DSA:3.40.50.300 287 558 1.0E-84 T 11-10-2018 APT56_01975 3406c5744cbb466ae0b866fce7953544 365 Gene3D G3DSA:3.10.620.30 110 284 3.1E-18 T 11-10-2018 APT56_01975 3406c5744cbb466ae0b866fce7953544 365 SMART SM00460 203 277 4.8E-15 T 11-10-2018 IPR002931 Transglutaminase-like APT56_01975 3406c5744cbb466ae0b866fce7953544 365 SUPERFAMILY SSF54001 150 276 3.36E-21 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APT56_01975 3406c5744cbb466ae0b866fce7953544 365 Pfam PF01841 Transglutaminase-like superfamily 157 275 1.5E-23 T 11-10-2018 IPR002931 Transglutaminase-like APT56_06400 f34bc42069cca0206ffb852006f52b46 208 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 1 177 33.28 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06400 f34bc42069cca0206ffb852006f52b46 208 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 130 151 - T 11-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06400 f34bc42069cca0206ffb852006f52b46 208 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 31 168 2.8E-37 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06400 f34bc42069cca0206ffb852006f52b46 208 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 32 170 9.6E-42 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06400 f34bc42069cca0206ffb852006f52b46 208 SUPERFAMILY SSF143243 21 190 4.18E-51 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06400 f34bc42069cca0206ffb852006f52b46 208 Gene3D G3DSA:3.30.460.80 1 149 1.9E-41 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06400 f34bc42069cca0206ffb852006f52b46 208 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 96 157 5.0E-23 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_13695 3652ca1a894440ef4fc2e5dde3ea5b98 326 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 26 301 2.1E-13 T 11-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD APT56_27140 206077786861022205b2906fbf57dc85 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 276 4.1E-45 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_17940 f4fa4228228df9ede70d7f5fd51b00cd 876 SUPERFAMILY SSF56935 120 876 2.98E-53 T 11-10-2018 APT56_17940 f4fa4228228df9ede70d7f5fd51b00cd 876 SMART SM00965 59 110 6.7E-11 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_17940 f4fa4228228df9ede70d7f5fd51b00cd 876 Gene3D G3DSA:3.55.50.30 29 132 3.4E-23 T 11-10-2018 APT56_17940 f4fa4228228df9ede70d7f5fd51b00cd 876 Pfam PF07715 TonB-dependent Receptor Plug Domain 159 251 2.9E-7 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_17940 f4fa4228228df9ede70d7f5fd51b00cd 876 Gene3D G3DSA:2.40.170.20 314 876 2.3E-26 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_19470 2a28703bff735b4b4809549d5c5ecab5 167 SUPERFAMILY SSF88946 11 93 1.26E-5 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_19470 2a28703bff735b4b4809549d5c5ecab5 167 Pfam PF08281 Sigma-70, region 4 106 158 1.2E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_19470 2a28703bff735b4b4809549d5c5ecab5 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 162 7.0E-18 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_19470 2a28703bff735b4b4809549d5c5ecab5 167 SUPERFAMILY SSF88659 85 163 3.27E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_19470 2a28703bff735b4b4809549d5c5ecab5 167 Gene3D G3DSA:1.10.10.10 80 164 1.4E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 Pfam PF01047 MarR family 60 118 2.7E-14 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 PRINTS PR00598 Bacterial regulatory protein MarR family signature 144 164 3.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 110 3.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 94 3.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 130 3.2E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 SMART SM00347 53 154 6.6E-26 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 Gene3D G3DSA:1.10.10.10 12 177 1.3E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 SUPERFAMILY SSF46785 33 166 6.45E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16020 d4fab042721d3fe2946c6856a57b3674 180 ProSitePatterns PS01117 MarR-type HTH domain signature. 93 127 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_27695 4cf2e05f01ea45256f11030aafad00ba 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 6 146 19.757 T 11-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 APT56_27695 4cf2e05f01ea45256f11030aafad00ba 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 31 145 1.7E-29 T 11-10-2018 IPR021131 Ribosomal protein L18e/L15P APT56_27695 4cf2e05f01ea45256f11030aafad00ba 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 5 145 8.8E-48 T 11-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27695 4cf2e05f01ea45256f11030aafad00ba 146 SUPERFAMILY SSF52080 7 144 3.79E-46 T 11-10-2018 IPR036227 Ribosomal L18e/L15P superfamily APT56_27695 4cf2e05f01ea45256f11030aafad00ba 146 Gene3D G3DSA:3.100.10.10 72 146 2.8E-13 T 11-10-2018 APT56_09930 f215ade305b3ec1cbe7f91de4db10123 415 SUPERFAMILY SSF55031 215 331 7.33E-29 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_09930 f215ade305b3ec1cbe7f91de4db10123 415 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 12 408 5.9E-126 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 APT56_09930 f215ade305b3ec1cbe7f91de4db10123 415 Gene3D G3DSA:3.40.630.10 21 404 7.0E-150 T 11-10-2018 APT56_09930 f215ade305b3ec1cbe7f91de4db10123 415 SUPERFAMILY SSF53187 7 410 1.91E-92 T 11-10-2018 APT56_09930 f215ade305b3ec1cbe7f91de4db10123 415 Pfam PF01546 Peptidase family M20/M25/M40 82 407 3.2E-38 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_09930 f215ade305b3ec1cbe7f91de4db10123 415 Gene3D G3DSA:3.30.70.360 215 329 7.0E-150 T 11-10-2018 APT56_09930 f215ade305b3ec1cbe7f91de4db10123 415 PIRSF PIRSF001235 6 415 1.2E-132 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 APT56_09930 f215ade305b3ec1cbe7f91de4db10123 415 Pfam PF07687 Peptidase dimerisation domain 212 315 6.6E-7 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_06710 36c3cfb693911b4463c313d812021e16 288 SUPERFAMILY SSF51366 8 254 2.35E-83 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_06710 36c3cfb693911b4463c313d812021e16 288 Gene3D G3DSA:3.20.20.70 4 283 1.6E-93 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_06710 36c3cfb693911b4463c313d812021e16 288 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 21 254 8.0E-71 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_06710 36c3cfb693911b4463c313d812021e16 288 Pfam PF00290 Tryptophan synthase alpha chain 19 259 3.3E-84 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_06710 36c3cfb693911b4463c313d812021e16 288 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 54 67 - T 11-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_06710 36c3cfb693911b4463c313d812021e16 288 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 19 277 33.046 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_05775 da33c7d07a41b4b2d799a93926a34944 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 287 7.3E-30 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_05775 da33c7d07a41b4b2d799a93926a34944 289 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 63 1.0E-7 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_05775 da33c7d07a41b4b2d799a93926a34944 289 SUPERFAMILY SSF161098 81 286 2.35E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_05775 da33c7d07a41b4b2d799a93926a34944 289 Gene3D G3DSA:1.10.3720.10 79 281 1.6E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12625 e7350db7f370d19ac418cf402eb385a9 322 Gene3D G3DSA:1.10.3720.10 87 316 5.8E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12625 e7350db7f370d19ac418cf402eb385a9 322 SUPERFAMILY SSF161098 92 306 2.75E-17 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12625 e7350db7f370d19ac418cf402eb385a9 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 320 1.2E-42 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_18600 2523f502cf36e2e343f9c9bf35aaf270 131 SUPERFAMILY SSF51316 1 130 1.15E-40 T 11-10-2018 IPR011057 Mss4-like superfamily APT56_18600 2523f502cf36e2e343f9c9bf35aaf270 131 Gene3D G3DSA:2.170.150.70 1 112 1.8E-17 T 11-10-2018 APT56_18600 2523f502cf36e2e343f9c9bf35aaf270 131 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 23 109 1.1E-17 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 APT56_15505 f849cde1eb0873c36ef3c106b92aa422 646 Pfam PF12805 FUSC-like inner membrane protein yccS 71 181 2.2E-5 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal APT56_15505 f849cde1eb0873c36ef3c106b92aa422 646 Pfam PF13515 Fusaric acid resistance protein-like 350 471 4.2E-14 T 11-10-2018 APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.4E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 Gene3D G3DSA:3.40.190.290 96 301 7.0E-51 T 11-10-2018 APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.6E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 SUPERFAMILY SSF46785 5 116 2.03E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 SUPERFAMILY SSF53850 95 298 6.52E-45 T 11-10-2018 APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 Pfam PF03466 LysR substrate binding domain 92 296 4.4E-45 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_23035 4bd86e881a32d82a66826c14cb7253c5 308 Gene3D G3DSA:1.10.10.10 6 94 1.8E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21010 1807aaa57472f9691e760639a745be44 427 PRINTS PR01486 Bacterial phospholipase A1 protein signature 337 355 8.3E-9 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 APT56_21010 1807aaa57472f9691e760639a745be44 427 PRINTS PR01486 Bacterial phospholipase A1 protein signature 207 224 8.3E-9 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 APT56_21010 1807aaa57472f9691e760639a745be44 427 PRINTS PR01486 Bacterial phospholipase A1 protein signature 285 299 8.3E-9 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 APT56_21010 1807aaa57472f9691e760639a745be44 427 PRINTS PR01486 Bacterial phospholipase A1 protein signature 397 417 8.3E-9 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 APT56_21010 1807aaa57472f9691e760639a745be44 427 SUPERFAMILY SSF56931 187 426 1.83E-54 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 APT56_21010 1807aaa57472f9691e760639a745be44 427 Gene3D G3DSA:2.40.230.10 178 427 2.4E-51 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 APT56_21010 1807aaa57472f9691e760639a745be44 427 Pfam PF02253 Phospholipase A1 209 425 1.7E-34 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 APT56_06945 fffd242681b7ab76a909774872b5cd56 135 Gene3D G3DSA:3.30.450.150 1 135 1.9E-37 T 11-10-2018 IPR038084 GlcG-like domain superfamily APT56_06945 fffd242681b7ab76a909774872b5cd56 135 SUPERFAMILY SSF143744 2 134 2.35E-37 T 11-10-2018 IPR038084 GlcG-like domain superfamily APT56_06945 fffd242681b7ab76a909774872b5cd56 135 Pfam PF03928 Haem-degrading 7 130 9.1E-31 T 11-10-2018 IPR005624 Haem-degrading APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 Gene3D G3DSA:2.40.50.940 221 344 4.7E-16 T 11-10-2018 APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 Pfam PF08402 TOBE domain 274 344 1.9E-13 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 Gene3D G3DSA:3.40.50.300 1 217 1.5E-70 T 11-10-2018 APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 SUPERFAMILY SSF52540 4 245 3.55E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 SMART SM00382 29 212 3.3E-23 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 35 319 6.4E-110 T 11-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 Pfam PF00005 ABC transporter 20 162 3.7E-38 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 SUPERFAMILY SSF50331 239 346 2.14E-17 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21690 336abb80811786c4ef34014bf11fe1a7 349 Gene3D G3DSA:2.40.50.140 280 337 4.7E-16 T 11-10-2018 APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 SUPERFAMILY SSF52518 484 712 7.07E-93 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 SUPERFAMILY SSF52922 716 875 4.36E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 PIRSF PIRSF000156 5 890 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 TIGRFAM TIGR03186 AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase 15 894 0.0 T 11-10-2018 IPR017600 Alpha-ketoglutarate dehydrogenase APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 Gene3D G3DSA:3.40.50.970 64 482 1.4E-124 T 11-10-2018 APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 Gene3D G3DSA:3.40.50.920 720 892 3.1E-58 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 SMART SM00861 505 710 0.009 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 SUPERFAMILY SSF52518 65 478 7.47E-125 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 Gene3D G3DSA:3.40.50.970 484 717 3.8E-102 T 11-10-2018 APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 14 873 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APT56_07205 e3d0d3dc2965933102c2aad7b41976e2 895 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 141 313 1.7E-8 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PIRSF PIRSF000361 69 415 4.7E-71 T 11-10-2018 IPR015701 Ferredoxin--NADP reductase GO:0016491|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 SUPERFAMILY SSF52343 264 415 3.27E-33 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 49 60 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 Pfam PF00175 Oxidoreductase NAD-binding domain 276 382 3.5E-12 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 SUPERFAMILY SSF63380 127 268 9.65E-39 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 TIGRFAM TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein 9 415 6.1E-221 T 11-10-2018 IPR017634 Benzoyl-CoA oxygenase/reductase, BoxA protein KEGG: 00362+1.14.13.208|MetaCyc: PWY-1361 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 Pfam PF00970 Oxidoreductase FAD-binding domain 200 263 1.4E-4 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 Gene3D G3DSA:2.40.30.10 121 260 5.7E-41 T 11-10-2018 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 SUPERFAMILY SSF54862 14 69 9.64E-20 T 11-10-2018 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 Pfam PF00037 4Fe-4S binding domain 15 36 1.2E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 Pfam PF00037 4Fe-4S binding domain 42 64 2.1E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PIRSF PIRSF501177 1 415 2.5E-224 T 11-10-2018 IPR017634 Benzoyl-CoA oxygenase/reductase, BoxA protein KEGG: 00362+1.14.13.208|MetaCyc: PWY-1361 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 369 377 2.9E-18 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 275 294 2.9E-18 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 303 312 2.9E-18 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 345 361 2.9E-18 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 180 190 2.9E-18 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 203 210 2.9E-18 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 239 248 2.9E-18 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 Gene3D G3DSA:3.30.70.20 13 65 1.3E-12 T 11-10-2018 APT56_22175 68fbcdaff3d75edf0f59bd7ba8289fe8 415 Gene3D G3DSA:3.40.50.80 261 415 1.3E-33 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_01125 596527e2a256445ad0f6ad41f68d4683 147 SUPERFAMILY SSF101738 3 110 1.83E-43 T 11-10-2018 IPR036760 SspB-like superfamily APT56_01125 596527e2a256445ad0f6ad41f68d4683 147 Pfam PF04386 Stringent starvation protein B 5 147 1.7E-32 T 11-10-2018 IPR007481 Stringent starvation protein B APT56_01125 596527e2a256445ad0f6ad41f68d4683 147 Gene3D G3DSA:2.30.30.220 1 124 1.5E-44 T 11-10-2018 IPR036760 SspB-like superfamily APT56_01125 596527e2a256445ad0f6ad41f68d4683 147 PIRSF PIRSF005276 1 147 2.2E-49 T 11-10-2018 IPR007481 Stringent starvation protein B APT56_06095 ad8c0d50809e9dd70026338422cd3be7 329 Gene3D G3DSA:2.60.120.1440 101 229 3.1E-18 T 11-10-2018 APT56_06095 ad8c0d50809e9dd70026338422cd3be7 329 PIRSF PIRSF018266 5 322 8.5E-91 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_06095 ad8c0d50809e9dd70026338422cd3be7 329 Pfam PF04773 FecR protein 112 207 1.4E-18 T 11-10-2018 IPR006860 FecR protein APT56_06095 ad8c0d50809e9dd70026338422cd3be7 329 Pfam PF16220 Domain of unknown function (DUF4880) 17 57 7.7E-15 T 11-10-2018 IPR032623 FecR, N-terminal APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 177 380 1.9E-34 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 Gene3D G3DSA:3.90.380.10 250 382 2.4E-11 T 11-10-2018 APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 Gene3D G3DSA:3.90.380.10 16 220 8.0E-32 T 11-10-2018 APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 SUPERFAMILY SSF55961 160 378 7.85E-46 T 11-10-2018 APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 Gene3D G3DSA:2.102.10.10 37 165 8.0E-32 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 SUPERFAMILY SSF50022 7 156 3.14E-28 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 74 94 7.3E-5 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 24 49 7.3E-5 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_08035 02efbc1aedbaca77807cd9fbc1395ab0 382 Pfam PF00355 Rieske [2Fe-2S] domain 42 136 1.3E-8 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_00315 d61bf337add89c31afb8a16b163abac4 234 Gene3D G3DSA:2.60.120.10 11 134 3.4E-71 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_00315 d61bf337add89c31afb8a16b163abac4 234 PIRSF PIRSF006232 1 234 1.5E-43 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 APT56_00315 d61bf337add89c31afb8a16b163abac4 234 Gene3D G3DSA:2.60.120.10 10 231 3.4E-71 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_00315 d61bf337add89c31afb8a16b163abac4 234 Pfam PF02678 Pirin 15 118 2.2E-27 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 APT56_00315 d61bf337add89c31afb8a16b163abac4 234 SUPERFAMILY SSF51182 1 231 1.68E-62 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_01755 4ad7c15dccb1a925a737b1372661c5a0 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 85 6.5E-9 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_01755 4ad7c15dccb1a925a737b1372661c5a0 112 Gene3D G3DSA:3.10.20.30 1 104 5.3E-14 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_01755 4ad7c15dccb1a925a737b1372661c5a0 112 SUPERFAMILY SSF54292 4 93 2.1E-16 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_27640 c7a1a9af17ae2bf65986bb0a8b965db4 287 SUPERFAMILY SSF103481 35 133 4.45E-14 T 11-10-2018 APT56_27640 c7a1a9af17ae2bf65986bb0a8b965db4 287 Pfam PF00892 EamA-like transporter family 141 277 3.7E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_27640 c7a1a9af17ae2bf65986bb0a8b965db4 287 Pfam PF00892 EamA-like transporter family 3 129 8.7E-21 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_27640 c7a1a9af17ae2bf65986bb0a8b965db4 287 SUPERFAMILY SSF103481 175 282 9.81E-14 T 11-10-2018 APT56_24600 8a836934a63859202a4ce9ddb2a204e4 264 SUPERFAMILY SSF48317 14 231 8.5E-16 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily APT56_24600 8a836934a63859202a4ce9ddb2a204e4 264 Pfam PF01569 PAP2 superfamily 106 231 5.2E-14 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT56_24600 8a836934a63859202a4ce9ddb2a204e4 264 Gene3D G3DSA:1.20.144.10 140 253 2.0E-8 T 11-10-2018 APT56_24600 8a836934a63859202a4ce9ddb2a204e4 264 SMART SM00014 104 229 0.0067 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 Gene3D G3DSA:3.30.470.20 118 298 1.0E-101 T 11-10-2018 APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 SUPERFAMILY SSF52440 1 125 2.68E-33 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 123 2.9E-37 T 11-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 Gene3D G3DSA:3.40.50.20 6 117 1.0E-101 T 11-10-2018 APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 315 5.4E-122 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 127 300 5.5E-74 T 11-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 Hamap MF_00162 Glutathione synthetase [gshB]. 1 319 153.845 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 Gene3D G3DSA:3.30.1490.20 140 204 1.0E-101 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_09980 743dcbf5f25e6b084b3a5239bdc072fb 326 SUPERFAMILY SSF56059 127 314 3.54E-58 T 11-10-2018 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 SUPERFAMILY SSF50621 245 372 6.63E-45 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 Hamap MF_01201 Alanine racemase. 2 375 32.864 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 Gene3D G3DSA:3.20.20.10 12 234 6.0E-106 T 11-10-2018 IPR029066 PLP-binding barrel APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 Gene3D G3DSA:2.40.37.10 235 370 6.0E-106 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 TIGRFAM TIGR00492 alr: alanine racemase 5 372 1.3E-100 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 Pfam PF01168 Alanine racemase, N-terminal domain 10 236 5.4E-62 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 SUPERFAMILY SSF51419 9 251 2.24E-54 T 11-10-2018 IPR029066 PLP-binding barrel APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 SMART SM01005 250 375 1.6E-63 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 36 52 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 70 88 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 209 236 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 357 370 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 266 281 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 167 178 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 283 298 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 304 321 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 PRINTS PR00992 Alanine racemase signature 130 142 1.6E-60 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 Pfam PF00842 Alanine racemase, C-terminal domain 250 371 1.9E-41 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_18410 88c3e603b67626714dfe471e7239bf9e 376 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 41 51 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 Gene3D G3DSA:2.60.40.650 296 411 3.0E-35 T 11-10-2018 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 Pfam PF00174 Oxidoreductase molybdopterin binding domain 96 267 1.1E-49 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 SUPERFAMILY SSF56524 57 327 4.32E-73 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 PRINTS PR00407 Eukaryotic molybdopterin domain signature 333 345 4.8E-13 T 11-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 PRINTS PR00407 Eukaryotic molybdopterin domain signature 294 306 4.8E-13 T 11-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 PRINTS PR00407 Eukaryotic molybdopterin domain signature 213 229 4.8E-13 T 11-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 PRINTS PR00407 Eukaryotic molybdopterin domain signature 160 175 4.8E-13 T 11-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 PRINTS PR00407 Eukaryotic molybdopterin domain signature 80 96 4.8E-13 T 11-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 PRINTS PR00407 Eukaryotic molybdopterin domain signature 230 243 4.8E-13 T 11-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 PRINTS PR00407 Eukaryotic molybdopterin domain signature 378 390 4.8E-13 T 11-10-2018 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 SUPERFAMILY SSF81296 297 409 4.48E-30 T 11-10-2018 IPR014756 Immunoglobulin E-set APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 294 407 1.3E-10 T 11-10-2018 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 Reactome: R-HSA-1614517 APT56_01735 4f5604ed43e43359b20b6cbc8c5fd37c 411 Gene3D G3DSA:3.90.420.10 37 295 1.2E-95 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 262 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 Gene3D G3DSA:1.10.10.60 168 269 4.1E-25 T 11-10-2018 APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 Pfam PF12833 Helix-turn-helix domain 190 267 8.4E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 SUPERFAMILY SSF46689 220 268 4.48E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 SUPERFAMILY SSF51182 40 191 2.13E-11 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 Gene3D G3DSA:2.60.120.10 26 105 5.3E-6 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 235 250 1.9E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 250 266 1.9E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_23795 0820b5bd6bb16fa913340c2c5b23aa6e 278 SMART SM00342 184 266 1.5E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_18815 df9b414d4485e9820b8819e2204078db 267 Pfam PF01958 Domain of unknown function DUF108 166 253 1.4E-29 T 11-10-2018 IPR002811 Aspartate dehydrogenase GO:0006742|GO:0016491|GO:0019363|GO:0055114 KEGG: 00760+1.4.1.21 APT56_18815 df9b414d4485e9820b8819e2204078db 267 SUPERFAMILY SSF51735 4 128 3.77E-19 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_18815 df9b414d4485e9820b8819e2204078db 267 Gene3D G3DSA:3.40.50.720 6 257 3.3E-67 T 11-10-2018 APT56_18815 df9b414d4485e9820b8819e2204078db 267 Hamap MF_01265 Probable L-aspartate dehydrogenase [nadX]. 3 265 32.162 T 11-10-2018 IPR020626 L-aspartate dehydrogenase, prokaryotic GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 APT56_18815 df9b414d4485e9820b8819e2204078db 267 SUPERFAMILY SSF55347 121 236 5.3E-26 T 11-10-2018 APT56_18815 df9b414d4485e9820b8819e2204078db 267 Gene3D G3DSA:3.30.360.10 121 240 3.3E-67 T 11-10-2018 APT56_18815 df9b414d4485e9820b8819e2204078db 267 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 118 2.2E-16 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 APT56_18815 df9b414d4485e9820b8819e2204078db 267 PIRSF PIRSF005227 1 267 3.9E-79 T 11-10-2018 IPR011182 L-aspartate dehydrogenase GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 PIRSF PIRSF000876 1 349 5.0E-138 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 Pfam PF00072 Response regulator receiver domain 6 108 7.7E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 SMART SM00448 4 123 1.3E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 SUPERFAMILY SSF52172 1 108 1.57E-28 T 11-10-2018 IPR011006 CheY-like superfamily APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 SUPERFAMILY SSF52738 158 346 3.01E-71 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 Pfam PF01339 CheB methylesterase 162 341 1.9E-61 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 Gene3D G3DSA:3.40.50.180 152 349 1.9E-78 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 Gene3D G3DSA:3.40.50.2300 1 133 2.8E-31 T 11-10-2018 APT56_11930 bfbb6fc346cddfe4bd59c9d5041f61bf 352 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 346 41.552 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT56_24410 2b243d49f5c1c107bf513b4c7f813e98 552 SUPERFAMILY SSF55154 1 191 2.13E-31 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 APT56_24410 2b243d49f5c1c107bf513b4c7f813e98 552 SMART SM01118 1 193 3.4E-26 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 APT56_24410 2b243d49f5c1c107bf513b4c7f813e98 552 Gene3D G3DSA:2.40.320.10 1 188 8.3E-24 T 11-10-2018 APT56_24410 2b243d49f5c1c107bf513b4c7f813e98 552 SMART SM00880 242 544 1.3E-53 T 11-10-2018 IPR007899 CHAD domain APT56_24410 2b243d49f5c1c107bf513b4c7f813e98 552 Gene3D G3DSA:1.40.20.10 405 549 1.4E-25 T 11-10-2018 IPR038186 CHAD domain superfamily APT56_24410 2b243d49f5c1c107bf513b4c7f813e98 552 Gene3D G3DSA:1.40.20.10 222 401 2.4E-19 T 11-10-2018 IPR038186 CHAD domain superfamily APT56_24410 2b243d49f5c1c107bf513b4c7f813e98 552 Pfam PF01928 CYTH domain 1 185 2.6E-18 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 APT56_24410 2b243d49f5c1c107bf513b4c7f813e98 552 Pfam PF05235 CHAD domain 243 508 1.1E-41 T 11-10-2018 IPR007899 CHAD domain APT56_04590 2457478f8143982034b7aebd3ca8451a 218 Gene3D G3DSA:1.10.150.240 23 83 1.7E-33 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APT56_04590 2457478f8143982034b7aebd3ca8451a 218 SUPERFAMILY SSF56784 9 191 2.39E-32 T 11-10-2018 IPR036412 HAD-like superfamily APT56_04590 2457478f8143982034b7aebd3ca8451a 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 181 1.1E-10 T 11-10-2018 APT56_04590 2457478f8143982034b7aebd3ca8451a 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 4.8E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_04590 2457478f8143982034b7aebd3ca8451a 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 126 142 4.8E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_04590 2457478f8143982034b7aebd3ca8451a 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 171 184 4.8E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_04590 2457478f8143982034b7aebd3ca8451a 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 164 4.8E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_04590 2457478f8143982034b7aebd3ca8451a 218 Gene3D G3DSA:3.40.50.1000 12 187 1.7E-33 T 11-10-2018 IPR023214 HAD superfamily APT56_04590 2457478f8143982034b7aebd3ca8451a 218 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 65 154 5.9E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_04590 2457478f8143982034b7aebd3ca8451a 218 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 12 172 5.5E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_07005 dc3c81c694fc6f386e036572ea684d1b 152 SUPERFAMILY SSF55729 1 149 4.79E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_07005 dc3c81c694fc6f386e036572ea684d1b 152 Gene3D G3DSA:3.40.630.30 3 147 1.8E-41 T 11-10-2018 APT56_07005 dc3c81c694fc6f386e036572ea684d1b 152 Pfam PF13673 Acetyltransferase (GNAT) domain 45 148 4.5E-15 T 11-10-2018 IPR000182 GNAT domain APT56_17015 fc329f8573604c27340efa7ba8f58100 406 SUPERFAMILY SSF89796 4 406 6.54E-143 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_17015 fc329f8573604c27340efa7ba8f58100 406 Gene3D G3DSA:3.40.50.10540 5 398 2.5E-145 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_17015 fc329f8573604c27340efa7ba8f58100 406 Gene3D G3DSA:3.30.1540.10 243 334 2.5E-145 T 11-10-2018 APT56_17015 fc329f8573604c27340efa7ba8f58100 406 Pfam PF02515 CoA-transferase family III 5 383 4.4E-134 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 Gene3D G3DSA:3.90.380.10 258 387 1.5E-8 T 11-10-2018 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 177 378 1.7E-33 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 SUPERFAMILY SSF50022 6 156 4.98E-29 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 Gene3D G3DSA:2.102.10.10 37 165 2.9E-31 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 74 94 4.0E-6 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 24 49 4.0E-6 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 SUPERFAMILY SSF55961 163 379 2.51E-42 T 11-10-2018 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 Pfam PF00355 Rieske [2Fe-2S] domain 41 136 1.2E-9 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_13385 20188c9e12e8cc97e3c9325d02d0fa99 388 Gene3D G3DSA:3.90.380.10 17 223 2.9E-31 T 11-10-2018 APT56_06300 9790275e92af56f062cc6b9e2ee9cabc 376 Gene3D G3DSA:2.40.420.20 279 355 9.5E-73 T 11-10-2018 APT56_06300 9790275e92af56f062cc6b9e2ee9cabc 376 SUPERFAMILY SSF111369 60 272 1.7E-42 T 11-10-2018 APT56_06300 9790275e92af56f062cc6b9e2ee9cabc 376 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 268 3.1E-34 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_06300 9790275e92af56f062cc6b9e2ee9cabc 376 Gene3D G3DSA:1.10.287.470 102 161 9.5E-73 T 11-10-2018 APT56_06300 9790275e92af56f062cc6b9e2ee9cabc 376 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 357 3.7E-75 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_06300 9790275e92af56f062cc6b9e2ee9cabc 376 Gene3D G3DSA:2.40.30.170 59 278 9.5E-73 T 11-10-2018 APT56_06300 9790275e92af56f062cc6b9e2ee9cabc 376 Gene3D G3DSA:2.40.50.100 67 195 9.5E-73 T 11-10-2018 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 97 117 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 SUPERFAMILY SSF48179 608 699 1.02E-21 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 Gene3D G3DSA:3.40.50.720 296 485 1.2E-59 T 11-10-2018 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 Gene3D G3DSA:1.10.1040.50 486 704 2.4E-73 T 11-10-2018 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 614 697 1.9E-6 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 483 576 4.8E-23 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 303 478 1.3E-58 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 SUPERFAMILY SSF48179 482 625 2.72E-28 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 197 2.1E-36 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 SUPERFAMILY SSF52096 10 292 3.49E-67 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_16315 5f3f4fab43a5d792514818966b307fab 706 Gene3D G3DSA:3.90.226.10 5 295 5.6E-87 T 11-10-2018 APT56_16315 5f3f4fab43a5d792514818966b307fab 706 SUPERFAMILY SSF51735 300 478 2.15E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_18160 ce9d8e5deecd0d5ef8d925e900f27f4d 381 SUPERFAMILY SSF53822 27 373 1.54E-91 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_18160 ce9d8e5deecd0d5ef8d925e900f27f4d 381 Pfam PF13458 Periplasmic binding protein 28 369 9.1E-61 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_18160 ce9d8e5deecd0d5ef8d925e900f27f4d 381 Gene3D G3DSA:3.40.50.2300 148 276 9.6E-98 T 11-10-2018 APT56_18160 ce9d8e5deecd0d5ef8d925e900f27f4d 381 Gene3D G3DSA:3.40.50.2300 29 343 9.6E-98 T 11-10-2018 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Gene3D G3DSA:3.10.20.740 1 123 1.8E-41 T 11-10-2018 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Gene3D G3DSA:3.30.70.20 128 205 5.3E-7 T 11-10-2018 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Gene3D G3DSA:3.40.50.740 278 349 6.4E-17 T 11-10-2018 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 630 4.8E-199 T 11-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 1 74 3.7E-20 T 11-10-2018 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 SMART SM00929 83 123 4.1E-20 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 SUPERFAMILY SSF54862 76 211 4.18E-35 T 11-10-2018 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 SUPERFAMILY SSF54292 1 74 5.52E-21 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Gene3D G3DSA:3.40.228.10 350 409 6.4E-17 T 11-10-2018 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 SUPERFAMILY SSF53706 214 654 1.69E-85 T 11-10-2018 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 121 1.9E-16 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Pfam PF00384 Molybdopterin oxidoreductase 524 631 5.1E-12 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Pfam PF00384 Molybdopterin oxidoreductase 273 412 7.9E-18 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 146 156 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06420 a49aee81f9b9b339a08d7e63940eeb5c 775 Gene3D G3DSA:3.40.50.740 414 658 5.9E-20 T 11-10-2018 APT56_02580 e5370aac2faf4969e9616808c8f9497a 132 SUPERFAMILY SSF48295 5 60 4.39E-13 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APT56_02580 e5370aac2faf4969e9616808c8f9497a 132 Pfam PF13518 Helix-turn-helix domain 16 52 5.2E-6 T 11-10-2018 APT56_27590 e5370aac2faf4969e9616808c8f9497a 132 SUPERFAMILY SSF48295 5 60 4.39E-13 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APT56_27590 e5370aac2faf4969e9616808c8f9497a 132 Pfam PF13518 Helix-turn-helix domain 16 52 5.2E-6 T 11-10-2018 APT56_08815 e5370aac2faf4969e9616808c8f9497a 132 SUPERFAMILY SSF48295 5 60 4.39E-13 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APT56_08815 e5370aac2faf4969e9616808c8f9497a 132 Pfam PF13518 Helix-turn-helix domain 16 52 5.2E-6 T 11-10-2018 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 SUPERFAMILY SSF54373 270 364 1.65E-7 T 11-10-2018 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 Gene3D G3DSA:3.30.9.10 116 365 9.2E-112 T 11-10-2018 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 Gene3D G3DSA:3.50.50.60 39 407 9.2E-112 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 Pfam PF01266 FAD dependent oxidoreductase 39 370 5.3E-46 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 SUPERFAMILY SSF51905 30 266 1.38E-32 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 Gene3D G3DSA:1.10.8.870 437 558 5.0E-24 T 11-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 358 364 2.8E-24 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 388 400 2.8E-24 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 112 124 2.8E-24 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 38 50 2.8E-24 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 67 79 2.8E-24 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 51 61 2.8E-24 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_17865 fc3f7bea24a20e8732df98d080c1df1d 559 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 420 534 3.4E-26 T 11-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_22770 c2b142280260927d75436b6ea175a35e 341 Gene3D G3DSA:3.40.50.300 128 334 5.8E-75 T 11-10-2018 APT56_22770 c2b142280260927d75436b6ea175a35e 341 SUPERFAMILY SSF52540 130 309 2.28E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22770 c2b142280260927d75436b6ea175a35e 341 Pfam PF02562 PhoH-like protein 131 334 4.3E-95 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 APT56_08835 506e320fb4571e674751baf83b96d704 1067 Gene3D G3DSA:3.30.70.1430 570 663 2.8E-285 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 SUPERFAMILY SSF82714 719 799 1.57E-11 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_08835 506e320fb4571e674751baf83b96d704 1067 Gene3D G3DSA:3.30.70.1430 40 813 2.8E-285 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 SUPERFAMILY SSF82866 302 502 5.1E-48 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 Gene3D G3DSA:3.30.2090.10 179 269 2.8E-285 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_08835 506e320fb4571e674751baf83b96d704 1067 Gene3D G3DSA:1.20.1640.10 10 515 2.8E-285 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 SUPERFAMILY SSF82714 183 265 3.66E-15 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_08835 506e320fb4571e674751baf83b96d704 1067 SUPERFAMILY SSF82866 808 1030 2.75E-44 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 Gene3D G3DSA:3.30.2090.10 715 805 2.8E-285 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_08835 506e320fb4571e674751baf83b96d704 1067 Gene3D G3DSA:3.30.70.1440 664 863 2.8E-285 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 Gene3D G3DSA:3.30.70.1320 135 338 2.8E-285 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 Pfam PF00873 AcrB/AcrD/AcrF family 4 1024 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 342 365 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 369 390 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 397 421 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 450 473 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 555 572 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 PRINTS PR00702 Acriflavin resistance protein family signature 475 498 5.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_08835 506e320fb4571e674751baf83b96d704 1067 Gene3D G3DSA:1.20.1640.10 516 1021 2.8E-285 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 SUPERFAMILY SSF82693 136 336 1.6E-20 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 SUPERFAMILY SSF82693 40 132 8.2E-22 T 11-10-2018 APT56_08835 506e320fb4571e674751baf83b96d704 1067 SUPERFAMILY SSF82693 568 661 9.42E-11 T 11-10-2018 APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.6E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.6E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.6E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.6E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 Gene3D G3DSA:3.40.50.720 1 261 3.3E-79 T 11-10-2018 APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 7 261 6.5E-103 T 11-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 Pfam PF00106 short chain dehydrogenase 7 199 3.5E-53 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26985 2523cc94273b9b1bea0a8bea0558cf3d 261 SUPERFAMILY SSF51735 5 260 7.95E-72 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_03360 69f4fba0028a3403d8f7bd6608dc86a5 399 Gene3D G3DSA:1.10.620.20 54 392 1.3E-112 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 APT56_03360 69f4fba0028a3403d8f7bd6608dc86a5 399 Pfam PF00268 Ribonucleotide reductase, small chain 79 366 1.4E-85 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03360 69f4fba0028a3403d8f7bd6608dc86a5 399 SUPERFAMILY SSF47240 63 370 7.03E-97 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_03360 69f4fba0028a3403d8f7bd6608dc86a5 399 PIRSF PIRSF000355 53 399 3.7E-132 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_10910 54053f96a457eb8525fe757eaee36892 347 SUPERFAMILY SSF51735 115 301 1.49E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_10910 54053f96a457eb8525fe757eaee36892 347 Gene3D G3DSA:3.40.50.720 115 298 3.9E-93 T 11-10-2018 APT56_10910 54053f96a457eb8525fe757eaee36892 347 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 125 300 7.6E-58 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_10910 54053f96a457eb8525fe757eaee36892 347 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 71 332 2.6E-24 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_10910 54053f96a457eb8525fe757eaee36892 347 Gene3D G3DSA:3.40.50.720 48 324 3.9E-93 T 11-10-2018 APT56_10910 54053f96a457eb8525fe757eaee36892 347 SUPERFAMILY SSF52283 68 144 1.51E-20 T 11-10-2018 APT56_10910 54053f96a457eb8525fe757eaee36892 347 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 210 232 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT56_10935 5a5fb177732ce5a2119dd98fa72e1fcb 366 SUPERFAMILY SSF51735 157 329 1.58E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_10935 5a5fb177732ce5a2119dd98fa72e1fcb 366 SMART SM00829 14 359 5.3E-6 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_10935 5a5fb177732ce5a2119dd98fa72e1fcb 366 SUPERFAMILY SSF50129 2 361 2.36E-38 T 11-10-2018 IPR011032 GroES-like superfamily APT56_10935 5a5fb177732ce5a2119dd98fa72e1fcb 366 Gene3D G3DSA:3.90.180.10 24 348 4.2E-102 T 11-10-2018 APT56_10935 5a5fb177732ce5a2119dd98fa72e1fcb 366 Gene3D G3DSA:3.40.50.720 172 307 4.2E-102 T 11-10-2018 APT56_10935 5a5fb177732ce5a2119dd98fa72e1fcb 366 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 147 7.0E-20 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_10935 5a5fb177732ce5a2119dd98fa72e1fcb 366 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT56_10935 5a5fb177732ce5a2119dd98fa72e1fcb 366 Pfam PF00107 Zinc-binding dehydrogenase 194 295 9.0E-27 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 330 485 9.4E-52 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 SUPERFAMILY SSF58104 237 521 7.06E-71 T 11-10-2018 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 SMART SM00304 217 269 4.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 182 1.6E-12 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 Gene3D G3DSA:1.10.287.950 217 519 1.3E-86 T 11-10-2018 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 SMART SM00283 270 517 1.5E-90 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 Pfam PF00672 HAMP domain 218 260 7.1E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 445 474 1.2E-51 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 291 320 1.2E-51 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 426 1.2E-51 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_20665 8bfdfeaeb6eb1a6c1a70c037818cf577 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 368 395 1.2E-51 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_08545 be53266d99cd60218b14ed3aa47eca3c 253 SUPERFAMILY SSF51306 150 249 4.19E-17 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily APT56_08545 be53266d99cd60218b14ed3aa47eca3c 253 Pfam PF00717 Peptidase S24-like 166 233 2.0E-8 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C APT56_08545 be53266d99cd60218b14ed3aa47eca3c 253 Gene3D G3DSA:2.10.109.10 146 251 1.6E-8 T 11-10-2018 APT56_10760 ae35e791208ad7c222191c7361d9fc28 236 Pfam PF00027 Cyclic nucleotide-binding domain 42 126 1.0E-11 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_10760 ae35e791208ad7c222191c7361d9fc28 236 Gene3D G3DSA:1.10.10.10 159 233 9.5E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10760 ae35e791208ad7c222191c7361d9fc28 236 SUPERFAMILY SSF51206 16 151 4.45E-23 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APT56_10760 ae35e791208ad7c222191c7361d9fc28 236 SMART SM00100 22 143 0.0062 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_10760 ae35e791208ad7c222191c7361d9fc28 236 Pfam PF13545 Crp-like helix-turn-helix domain 160 231 2.4E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_10760 ae35e791208ad7c222191c7361d9fc28 236 Gene3D G3DSA:2.60.120.10 12 155 1.7E-17 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_10760 ae35e791208ad7c222191c7361d9fc28 236 SUPERFAMILY SSF46785 157 232 3.33E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14300 1e0472ad2bb9a802db665d4fa501999f 313 Gene3D G3DSA:3.40.50.720 27 306 2.9E-100 T 11-10-2018 APT56_14300 1e0472ad2bb9a802db665d4fa501999f 313 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 279 4.0E-50 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_14300 1e0472ad2bb9a802db665d4fa501999f 313 SUPERFAMILY SSF51735 100 280 5.59E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_14300 1e0472ad2bb9a802db665d4fa501999f 313 Gene3D G3DSA:3.40.50.720 101 282 2.9E-100 T 11-10-2018 APT56_14300 1e0472ad2bb9a802db665d4fa501999f 313 SUPERFAMILY SSF52283 6 133 4.73E-31 T 11-10-2018 APT56_14300 1e0472ad2bb9a802db665d4fa501999f 313 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 310 1.4E-20 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_01470 238527c05fb913974252850e7897f07a 440 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 5.4E-137 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT56_01470 238527c05fb913974252850e7897f07a 440 Gene3D G3DSA:1.20.5.100 203 234 1.3E-18 T 11-10-2018 APT56_01470 238527c05fb913974252850e7897f07a 440 Gene3D G3DSA:3.40.50.720 1 202 1.8E-81 T 11-10-2018 APT56_01470 238527c05fb913974252850e7897f07a 440 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 2.2E-38 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_01470 238527c05fb913974252850e7897f07a 440 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 423 6.0E-32 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_01470 238527c05fb913974252850e7897f07a 440 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 185 2.9E-64 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_01470 238527c05fb913974252850e7897f07a 440 SUPERFAMILY SSF52413 305 434 2.22E-39 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 APT56_01470 238527c05fb913974252850e7897f07a 440 Gene3D G3DSA:3.40.50.720 235 440 1.9E-80 T 11-10-2018 APT56_01470 238527c05fb913974252850e7897f07a 440 PIRSF PIRSF000124 1 439 5.1E-148 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT56_01470 238527c05fb913974252850e7897f07a 440 PIRSF PIRSF500134 1 440 8.5E-192 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 APT56_01470 238527c05fb913974252850e7897f07a 440 SUPERFAMILY SSF51735 1 194 1.42E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_01470 238527c05fb913974252850e7897f07a 440 SMART SM00984 320 424 6.0E-52 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_01470 238527c05fb913974252850e7897f07a 440 SUPERFAMILY SSF48179 204 300 6.05E-34 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_02550 d738f03906da024ca888b3917f48c62d 333 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 26 296 1.8E-86 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_02550 d738f03906da024ca888b3917f48c62d 333 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 4 319 7.8E-87 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_02550 d738f03906da024ca888b3917f48c62d 333 Gene3D G3DSA:2.40.100.10 186 322 9.4E-48 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_02550 d738f03906da024ca888b3917f48c62d 333 SMART SM00797 24 313 3.5E-124 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_02550 d738f03906da024ca888b3917f48c62d 333 SUPERFAMILY SSF50891 196 302 6.45E-8 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_24960 14c889fa3bc652ea7da83e089a349161 469 Gene3D G3DSA:1.10.10.10 1 66 3.9E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24960 14c889fa3bc652ea7da83e089a349161 469 Gene3D G3DSA:3.90.1150.10 98 466 4.6E-100 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_24960 14c889fa3bc652ea7da83e089a349161 469 Gene3D G3DSA:3.40.640.10 143 361 4.6E-100 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_24960 14c889fa3bc652ea7da83e089a349161 469 Pfam PF00155 Aminotransferase class I and II 149 451 4.0E-30 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_24960 14c889fa3bc652ea7da83e089a349161 469 SUPERFAMILY SSF53383 94 467 3.09E-91 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_24960 14c889fa3bc652ea7da83e089a349161 469 SMART SM00345 7 66 2.8E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_24960 14c889fa3bc652ea7da83e089a349161 469 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 2.9E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_24960 14c889fa3bc652ea7da83e089a349161 469 SUPERFAMILY SSF46785 2 75 1.23E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22205 9d135cbc8478ac01c36367ce2219876c 281 Pfam PF12697 Alpha/beta hydrolase family 39 262 4.0E-13 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_22205 9d135cbc8478ac01c36367ce2219876c 281 SUPERFAMILY SSF53474 20 268 1.89E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_22205 9d135cbc8478ac01c36367ce2219876c 281 Gene3D G3DSA:3.40.50.1820 7 268 9.2E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 224 3.7E-91 T 11-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 Gene3D G3DSA:1.10.10.10 127 229 1.4E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 SUPERFAMILY SSF52172 1 119 8.82E-39 T 11-10-2018 IPR011006 CheY-like superfamily APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 SMART SM00448 1 111 1.1E-42 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 SMART SM00862 149 224 6.3E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 1.5E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 Pfam PF00072 Response regulator receiver domain 3 111 2.9E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 Gene3D G3DSA:3.40.50.2300 1 125 4.7E-39 T 11-10-2018 APT56_01625 29bc79fbda98e9761f5e7964fbfd6a1e 229 SUPERFAMILY SSF46894 127 225 7.94E-29 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_25035 ac21243ad113f9ac73d71d638f5961b9 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.8E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25035 ac21243ad113f9ac73d71d638f5961b9 308 Gene3D G3DSA:1.10.10.10 1 90 8.0E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25035 ac21243ad113f9ac73d71d638f5961b9 308 Gene3D G3DSA:3.40.190.290 91 295 2.6E-37 T 11-10-2018 APT56_25035 ac21243ad113f9ac73d71d638f5961b9 308 SUPERFAMILY SSF53850 87 296 6.24E-34 T 11-10-2018 APT56_25035 ac21243ad113f9ac73d71d638f5961b9 308 SUPERFAMILY SSF46785 1 106 7.07E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25035 ac21243ad113f9ac73d71d638f5961b9 308 Pfam PF03466 LysR substrate binding domain 85 284 7.2E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_12725 d935d65e39aebaac4a1ed0247e1e6985 287 SUPERFAMILY SSF103481 42 138 3.53E-7 T 11-10-2018 APT56_12725 d935d65e39aebaac4a1ed0247e1e6985 287 SUPERFAMILY SSF103481 182 282 2.22E-10 T 11-10-2018 APT56_12725 d935d65e39aebaac4a1ed0247e1e6985 287 Pfam PF00892 EamA-like transporter family 148 280 3.8E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_12725 d935d65e39aebaac4a1ed0247e1e6985 287 Pfam PF00892 EamA-like transporter family 6 133 3.5E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_16855 3d54578929943957a67b2393fd3cfc41 191 SUPERFAMILY SSF69118 9 187 3.32E-43 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_16855 3d54578929943957a67b2393fd3cfc41 191 Pfam PF02627 Carboxymuconolactone decarboxylase family 53 130 4.5E-14 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_16855 3d54578929943957a67b2393fd3cfc41 191 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 71 100 6.8E-10 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_16855 3d54578929943957a67b2393fd3cfc41 191 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 15 187 7.4E-65 T 11-10-2018 IPR010195 Uncharacterised peroxidase-related APT56_16855 3d54578929943957a67b2393fd3cfc41 191 Gene3D G3DSA:1.20.1290.10 73 190 1.2E-34 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_14570 eb30a5acc4f4876c0b5f2e53ed0a44b4 247 SUPERFAMILY SSF53681 10 121 3.27E-31 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_14570 eb30a5acc4f4876c0b5f2e53ed0a44b4 247 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 85 93 - T 11-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_14570 eb30a5acc4f4876c0b5f2e53ed0a44b4 247 Gene3D G3DSA:3.40.50.1860 10 231 2.0E-72 T 11-10-2018 APT56_14570 eb30a5acc4f4876c0b5f2e53ed0a44b4 247 TIGRFAM TIGR00035 asp_race: aspartate racemase 10 240 2.2E-46 T 11-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 APT56_14570 eb30a5acc4f4876c0b5f2e53ed0a44b4 247 Pfam PF01177 Asp/Glu/Hydantoin racemase 13 232 5.0E-61 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_14570 eb30a5acc4f4876c0b5f2e53ed0a44b4 247 Gene3D G3DSA:3.40.50.1860 111 224 2.0E-72 T 11-10-2018 APT56_14570 eb30a5acc4f4876c0b5f2e53ed0a44b4 247 SUPERFAMILY SSF53681 125 237 1.64E-24 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_22925 4f4366ffc1738e37347ecae5751b29fe 85 Pfam PF11390 NADH-dependant formate dehydrogenase delta subunit FdsD 5 71 2.3E-27 T 11-10-2018 IPR021074 Formate dehydrogenase, delta subunit APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 Gene3D G3DSA:3.40.50.300 34 195 5.1E-41 T 11-10-2018 APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 SUPERFAMILY SSF52540 34 264 2.4E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 23 249 9.1E-118 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 Gene3D G3DSA:1.10.8.60 196 269 5.8E-29 T 11-10-2018 APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 264 342 5.0E-39 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 357 180.493 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 Gene3D G3DSA:1.10.10.10 271 349 2.1E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 SUPERFAMILY SSF46785 271 344 5.44E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 SMART SM00382 65 193 2.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 37 340 1.4E-145 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 APT56_05275 23d1e45c460571119eb453b38a6b49fa 357 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 267 340 3.8E-33 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 APT56_11885 efec6a92210d239a018a13406319ae03 107 SUPERFAMILY SSF63592 6 99 2.09E-35 T 11-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily APT56_11885 efec6a92210d239a018a13406319ae03 107 Gene3D G3DSA:1.10.4000.10 4 107 1.0E-38 T 11-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily APT56_11885 efec6a92210d239a018a13406319ae03 107 Pfam PF05247 Flagellar transcriptional activator (FlhD) 6 104 1.2E-41 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 APT56_11885 efec6a92210d239a018a13406319ae03 107 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 3 106 27.56 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 APT56_11885 efec6a92210d239a018a13406319ae03 107 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 12 99 4.0E-43 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 APT56_26700 44d20e4486baf1d1f6943925de5310cd 204 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 92 171 1.4E-30 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT56_26700 44d20e4486baf1d1f6943925de5310cd 204 Gene3D G3DSA:3.30.160.70 18 88 1.4E-18 T 11-10-2018 APT56_26700 44d20e4486baf1d1f6943925de5310cd 204 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 142 148 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APT56_26700 44d20e4486baf1d1f6943925de5310cd 204 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 22 172 38.098 T 11-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 APT56_26700 44d20e4486baf1d1f6943925de5310cd 204 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 93 172 2.4E-29 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT56_26700 44d20e4486baf1d1f6943925de5310cd 204 SUPERFAMILY SSF53155 19 96 5.89E-18 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APT56_26700 44d20e4486baf1d1f6943925de5310cd 204 SUPERFAMILY SSF46767 91 172 3.27E-28 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 APT56_26700 44d20e4486baf1d1f6943925de5310cd 204 Gene3D G3DSA:1.10.10.10 91 176 9.6E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20095 28bf24fd5c901b3c40259a98a0d7e4bf 276 Gene3D G3DSA:3.40.1080.10 18 257 9.7E-56 T 11-10-2018 APT56_20095 28bf24fd5c901b3c40259a98a0d7e4bf 276 SMART SM00882 11 231 5.4E-30 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_20095 28bf24fd5c901b3c40259a98a0d7e4bf 276 Pfam PF01144 Coenzyme A transferase 14 227 2.7E-21 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_20095 28bf24fd5c901b3c40259a98a0d7e4bf 276 Gene3D G3DSA:3.30.30.40 123 159 9.7E-56 T 11-10-2018 APT56_20095 28bf24fd5c901b3c40259a98a0d7e4bf 276 SUPERFAMILY SSF100950 10 257 7.18E-60 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_11120 f51ccb9396ecc510ff805ab35557d4e8 699 SUPERFAMILY SSF56935 52 699 1.53E-129 T 11-10-2018 APT56_11120 f51ccb9396ecc510ff805ab35557d4e8 699 Gene3D G3DSA:2.170.130.10 46 164 3.9E-32 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_11120 f51ccb9396ecc510ff805ab35557d4e8 699 Gene3D G3DSA:2.40.170.20 165 699 3.4E-119 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_11120 f51ccb9396ecc510ff805ab35557d4e8 699 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 682 699 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_11120 f51ccb9396ecc510ff805ab35557d4e8 699 Pfam PF00593 TonB dependent receptor 226 698 1.7E-61 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_11120 f51ccb9396ecc510ff805ab35557d4e8 699 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 155 3.8E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_11120 f51ccb9396ecc510ff805ab35557d4e8 699 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 699 3.4E-112 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 Pfam PF01494 FAD binding domain 4 338 1.6E-18 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 386 1.6E-100 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 SUPERFAMILY SSF51905 1 385 1.63E-48 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 293 306 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 Gene3D G3DSA:3.30.9.50 79 269 2.3E-80 T 11-10-2018 APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 Gene3D G3DSA:3.50.50.60 5 336 2.3E-80 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 3.8E-18 T 11-10-2018 APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 3.8E-18 T 11-10-2018 APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 3.8E-18 T 11-10-2018 APT56_02060 3c1ceeb4c2a1c75e15c51f7c20c1e15e 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 3.8E-18 T 11-10-2018 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 Gene3D G3DSA:2.40.50.140 127 186 8.9E-29 T 11-10-2018 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 SMART SM00841 128 183 1.8E-27 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 SUPERFAMILY SSF50104 1 63 8.53E-15 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 Gene3D G3DSA:2.40.50.140 64 126 1.2E-21 T 11-10-2018 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 1.2E-16 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 PIRSF PIRSF005901 1 185 4.6E-57 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 Gene3D G3DSA:2.30.30.30 1 62 3.8E-17 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 TIGRFAM TIGR00038 efp: translation elongation factor P 3 184 3.7E-64 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 SUPERFAMILY SSF50249 65 126 1.76E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 ProSitePatterns PS01275 Elongation factor P signature. 149 168 - T 11-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 SUPERFAMILY SSF50249 128 184 4.97E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 Hamap MF_00141 Elongation factor P [efp]. 1 184 46.841 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 Pfam PF09285 Elongation factor P, C-terminal 128 183 3.1E-24 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 120 3.3E-17 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 APT56_19720 124dfcf1e06cb581600c0d24c1bb1d1f 186 SMART SM01185 67 120 2.5E-20 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 APT56_04905 4a511550fee780709074adcb138583cb 373 Gene3D G3DSA:3.40.50.10540 11 355 2.8E-132 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_04905 4a511550fee780709074adcb138583cb 373 SUPERFAMILY SSF89796 9 367 1.83E-127 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_04905 4a511550fee780709074adcb138583cb 373 Gene3D G3DSA:3.30.1540.10 231 322 2.8E-132 T 11-10-2018 APT56_04905 4a511550fee780709074adcb138583cb 373 Pfam PF02515 CoA-transferase family III 11 368 3.0E-123 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_09775 df93e061e7c044d0a880bfe3e801fd73 501 SUPERFAMILY SSF56954 38 437 1.96E-77 T 11-10-2018 APT56_09775 df93e061e7c044d0a880bfe3e801fd73 501 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 36 439 1.9E-83 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 APT56_09775 df93e061e7c044d0a880bfe3e801fd73 501 Pfam PF02321 Outer membrane efflux protein 39 226 4.9E-20 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_09775 df93e061e7c044d0a880bfe3e801fd73 501 Pfam PF02321 Outer membrane efflux protein 253 429 8.9E-27 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_09775 df93e061e7c044d0a880bfe3e801fd73 501 Gene3D G3DSA:1.20.1600.10 37 440 1.4E-79 T 11-10-2018 APT56_18750 636037c26276a150f8f8bdfb11c17d38 211 Pfam PF13649 Methyltransferase domain 57 150 1.0E-11 T 11-10-2018 APT56_18750 636037c26276a150f8f8bdfb11c17d38 211 Gene3D G3DSA:3.40.50.150 18 207 1.8E-24 T 11-10-2018 APT56_18750 636037c26276a150f8f8bdfb11c17d38 211 SUPERFAMILY SSF53335 32 203 1.89E-24 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_24705 07edc881a1abb013db5613382aadc942 161 Gene3D G3DSA:3.40.430.10 3 161 2.6E-59 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 APT56_24705 07edc881a1abb013db5613382aadc942 161 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 16 38 - T 11-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 APT56_24705 07edc881a1abb013db5613382aadc942 161 SUPERFAMILY SSF53597 4 160 2.72E-55 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 APT56_24705 07edc881a1abb013db5613382aadc942 161 PRINTS PR00070 Dihydrofolate reductase signature 16 26 2.1E-16 T 11-10-2018 APT56_24705 07edc881a1abb013db5613382aadc942 161 PRINTS PR00070 Dihydrofolate reductase signature 43 54 2.1E-16 T 11-10-2018 APT56_24705 07edc881a1abb013db5613382aadc942 161 PRINTS PR00070 Dihydrofolate reductase signature 94 108 2.1E-16 T 11-10-2018 APT56_24705 07edc881a1abb013db5613382aadc942 161 PRINTS PR00070 Dihydrofolate reductase signature 30 38 2.1E-16 T 11-10-2018 APT56_24705 07edc881a1abb013db5613382aadc942 161 Pfam PF00186 Dihydrofolate reductase 5 160 5.2E-57 T 11-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 APT56_24705 07edc881a1abb013db5613382aadc942 161 PIRSF PIRSF000194 1 161 6.9E-60 T 11-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 APT56_18940 5cff494dc6fa6508393c5a44e8a34bd3 347 Gene3D G3DSA:1.20.58.340 289 346 3.5E-14 T 11-10-2018 APT56_18940 5cff494dc6fa6508393c5a44e8a34bd3 347 SUPERFAMILY SSF144083 282 343 5.49E-15 T 11-10-2018 APT56_18940 5cff494dc6fa6508393c5a44e8a34bd3 347 Gene3D G3DSA:1.20.58.340 159 281 1.4E-14 T 11-10-2018 APT56_18940 5cff494dc6fa6508393c5a44e8a34bd3 347 Gene3D G3DSA:3.30.460.20 5 156 4.3E-30 T 11-10-2018 APT56_18940 5cff494dc6fa6508393c5a44e8a34bd3 347 Pfam PF01544 CorA-like Mg2+ transporter protein 56 340 1.1E-49 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 APT56_18940 5cff494dc6fa6508393c5a44e8a34bd3 347 SUPERFAMILY SSF143865 14 278 2.35E-35 T 11-10-2018 APT56_05370 6629b7396e6585c16178761fc919991b 140 SUPERFAMILY SSF54427 2 123 2.93E-32 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_05370 6629b7396e6585c16178761fc919991b 140 Gene3D G3DSA:3.10.450.50 1 131 5.6E-36 T 11-10-2018 APT56_05370 6629b7396e6585c16178761fc919991b 140 Pfam PF13474 SnoaL-like domain 10 124 1.3E-15 T 11-10-2018 IPR037401 SnoaL-like domain APT56_08440 cc45e8bd9724668261c9e852d8166957 367 SUPERFAMILY SSF55103 191 365 4.58E-16 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_08440 cc45e8bd9724668261c9e852d8166957 367 SUPERFAMILY SSF56176 7 177 5.14E-35 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_08440 cc45e8bd9724668261c9e852d8166957 367 Gene3D G3DSA:3.30.465.40 6 189 1.3E-34 T 11-10-2018 APT56_08440 cc45e8bd9724668261c9e852d8166957 367 Pfam PF01565 FAD binding domain 9 139 1.7E-22 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_14800 53c41607349411115a1e66943973bf51 232 Gene3D G3DSA:2.60.120.10 12 132 7.4E-56 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_14800 53c41607349411115a1e66943973bf51 232 PIRSF PIRSF006232 1 230 1.2E-54 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 APT56_14800 53c41607349411115a1e66943973bf51 232 SUPERFAMILY SSF51182 1 231 1.2E-78 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_14800 53c41607349411115a1e66943973bf51 232 Pfam PF02678 Pirin 10 119 4.4E-37 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 APT56_14800 53c41607349411115a1e66943973bf51 232 Gene3D G3DSA:2.60.120.10 133 232 2.5E-34 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_19570 280de92cedd84394fd3967b197f0c9c9 108 Gene3D G3DSA:3.90.1210.30 10 92 2.1E-22 T 11-10-2018 APT56_19570 280de92cedd84394fd3967b197f0c9c9 108 SMART SM00858 18 89 2.9E-12 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_19570 280de92cedd84394fd3967b197f0c9c9 108 Pfam PF08666 SAF domain 18 88 1.0E-10 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_07755 83298ad2fcf1be27d69f7f5880e8db4f 329 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 26 315 2.3E-166 T 11-10-2018 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.149 APT56_07755 83298ad2fcf1be27d69f7f5880e8db4f 329 SUPERFAMILY SSF47240 46 289 1.62E-83 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_07755 83298ad2fcf1be27d69f7f5880e8db4f 329 Pfam PF05138 Phenylacetic acid catabolic protein 36 311 3.1E-105 T 11-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 APT56_07755 83298ad2fcf1be27d69f7f5880e8db4f 329 Gene3D G3DSA:1.20.1260.10 19 329 2.8E-134 T 11-10-2018 IPR012347 Ferritin-like APT56_03565 d097b6dd422b43bb764e942e58494e31 641 Pfam PF08298 PrkA AAA domain 21 377 5.5E-173 T 11-10-2018 IPR013153 PrkA AAA domain APT56_03565 d097b6dd422b43bb764e942e58494e31 641 SUPERFAMILY SSF52540 76 346 5.58E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03565 d097b6dd422b43bb764e942e58494e31 641 Pfam PF06798 PrkA serine protein kinase C-terminal domain 380 633 1.7E-73 T 11-10-2018 IPR010650 PrkA C-terminal domain APT56_03565 d097b6dd422b43bb764e942e58494e31 641 SMART SM00763 20 377 1.3E-217 T 11-10-2018 IPR013153 PrkA AAA domain APT56_03565 d097b6dd422b43bb764e942e58494e31 641 PIRSF PIRSF000549 1 641 1.3E-294 T 11-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 APT56_19985 bb198af568a1ee28c66bde4c8942b0a7 222 SUPERFAMILY SSF52172 3 176 1.34E-9 T 11-10-2018 IPR011006 CheY-like superfamily APT56_19985 bb198af568a1ee28c66bde4c8942b0a7 222 SUPERFAMILY SSF46894 132 206 1.94E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_19985 bb198af568a1ee28c66bde4c8942b0a7 222 Gene3D G3DSA:3.40.50.12740 2 206 2.4E-26 T 11-10-2018 APT56_19985 bb198af568a1ee28c66bde4c8942b0a7 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 199 5.5E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19985 bb198af568a1ee28c66bde4c8942b0a7 222 SMART SM00421 143 200 6.6E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19985 bb198af568a1ee28c66bde4c8942b0a7 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 1.1E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19985 bb198af568a1ee28c66bde4c8942b0a7 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 1.1E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19985 bb198af568a1ee28c66bde4c8942b0a7 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 1.1E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25465 97026f750dd6ffa7f1c5f0f1d4ed1e3e 350 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 40 260 7.7E-45 T 11-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 APT56_14690 c0941bdea69d78009bb1670a766f187f 387 Gene3D G3DSA:3.10.560.10 66 252 2.5E-61 T 11-10-2018 APT56_14690 c0941bdea69d78009bb1670a766f187f 387 Pfam PF02563 Polysaccharide biosynthesis/export protein 86 164 2.2E-11 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 APT56_14690 c0941bdea69d78009bb1670a766f187f 387 Gene3D G3DSA:3.10.560.10 253 343 2.5E-61 T 11-10-2018 APT56_14690 c0941bdea69d78009bb1670a766f187f 387 Gene3D G3DSA:3.30.1950.10 87 170 2.5E-61 T 11-10-2018 APT56_04485 e1b7ca57970e15fa3d937914ead9953f 217 Gene3D G3DSA:1.10.3720.10 2 217 2.3E-52 T 11-10-2018 IPR035906 MetI-like superfamily APT56_04485 e1b7ca57970e15fa3d937914ead9953f 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 214 2.5E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_04485 e1b7ca57970e15fa3d937914ead9953f 217 SUPERFAMILY SSF161098 8 207 2.09E-46 T 11-10-2018 IPR035906 MetI-like superfamily APT56_26140 7b75eaac87cacb9fad2a0f17228b6e46 108 Gene3D G3DSA:3.40.30.10 7 104 1.5E-34 T 11-10-2018 APT56_26140 7b75eaac87cacb9fad2a0f17228b6e46 108 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 102 7.6E-46 T 11-10-2018 IPR004480 Monothiol glutaredoxin-related APT56_26140 7b75eaac87cacb9fad2a0f17228b6e46 108 PIRSF PIRSF005894 1 108 1.5E-48 T 11-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 APT56_26140 7b75eaac87cacb9fad2a0f17228b6e46 108 SUPERFAMILY SSF52833 1 106 1.74E-34 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_26140 7b75eaac87cacb9fad2a0f17228b6e46 108 Pfam PF00462 Glutaredoxin 17 82 7.5E-19 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 Pfam PF00342 Phosphoglucose isomerase 47 509 8.4E-140 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 31 494 34.528 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 Gene3D G3DSA:1.10.1390.10 477 518 4.2E-14 T 11-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 235 248 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 Gene3D G3DSA:3.40.50.10490 29 476 8.6E-157 T 11-10-2018 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 SUPERFAMILY SSF53697 29 516 3.21E-156 T 11-10-2018 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 PRINTS PR00662 Glucose-6-phosphate isomerase signature 467 480 5.4E-48 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 PRINTS PR00662 Glucose-6-phosphate isomerase signature 435 453 5.4E-48 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 PRINTS PR00662 Glucose-6-phosphate isomerase signature 122 141 5.4E-48 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 PRINTS PR00662 Glucose-6-phosphate isomerase signature 308 329 5.4E-48 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 PRINTS PR00662 Glucose-6-phosphate isomerase signature 453 467 5.4E-48 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 PRINTS PR00662 Glucose-6-phosphate isomerase signature 231 249 5.4E-48 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 Gene3D G3DSA:3.40.50.10490 83 261 8.6E-157 T 11-10-2018 APT56_24630 273d7616c9b493305c863b97af0ffd6d 519 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 467 484 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_16270 c5ea34f1f17e13f414642761c79ed1d9 175 Gene3D G3DSA:2.60.40.200 21 175 2.0E-48 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT56_16270 c5ea34f1f17e13f414642761c79ed1d9 175 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 34 174 4.3E-33 T 11-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT56_16270 c5ea34f1f17e13f414642761c79ed1d9 175 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 67 77 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT56_16270 c5ea34f1f17e13f414642761c79ed1d9 175 SUPERFAMILY SSF49329 36 174 1.7E-45 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 SUPERFAMILY SSF47323 673 943 1.53E-69 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 408 423 9.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 539 552 9.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 50 61 9.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 233 256 9.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 582 591 9.3E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 944 20.64 T 11-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 869 1.4E-261 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 Gene3D G3DSA:3.40.50.620 24 650 4.1E-216 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 Gene3D G3DSA:3.90.740.10 191 415 4.1E-216 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 Pfam PF08264 Anticodon-binding domain of tRNA 706 867 2.0E-24 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 661 1.7E-189 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 Gene3D G3DSA:1.10.730.20 661 944 1.5E-86 T 11-10-2018 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 SUPERFAMILY SSF52374 1 670 5.16E-133 T 11-10-2018 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 Pfam PF06827 Zinc finger found in FPG and IleRS 914 941 5.4E-6 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 APT56_17990 f1904613a69aaa03ce29d3fdf5df84e7 953 SUPERFAMILY SSF50677 200 410 1.05E-49 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT56_19890 7fecad3ee1fa529800d416aa57474794 315 PIRSF PIRSF000441 130 303 4.6E-51 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 APT56_19890 7fecad3ee1fa529800d416aa57474794 315 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 257 290 3.5E-7 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_19890 7fecad3ee1fa529800d416aa57474794 315 Gene3D G3DSA:1.10.3130.10 42 196 1.2E-44 T 11-10-2018 APT56_19890 7fecad3ee1fa529800d416aa57474794 315 SUPERFAMILY SSF51161 118 299 1.8E-44 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_19890 7fecad3ee1fa529800d416aa57474794 315 Gene3D G3DSA:2.160.10.10 197 307 2.3E-30 T 11-10-2018 APT56_25635 060ea4865c4857fa3dba2553d71c361e 126 SUPERFAMILY SSF51182 45 117 1.69E-12 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_25635 060ea4865c4857fa3dba2553d71c361e 126 Gene3D G3DSA:2.60.120.10 40 117 4.1E-14 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_25635 060ea4865c4857fa3dba2553d71c361e 126 Pfam PF07883 Cupin domain 55 115 1.5E-9 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 140 6.8E-43 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Gene3D G3DSA:3.40.120.10 263 344 6.7E-57 T 11-10-2018 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Gene3D G3DSA:3.40.120.10 180 366 6.7E-57 T 11-10-2018 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Gene3D G3DSA:3.30.310.50 375 447 9.3E-21 T 11-10-2018 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 SUPERFAMILY SSF55957 363 444 9.29E-20 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 163 260 5.1E-17 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 264 371 7.7E-28 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Gene3D G3DSA:3.40.120.10 3 158 1.1E-48 T 11-10-2018 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 SUPERFAMILY SSF53738 162 262 1.81E-27 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 101 115 3.7E-12 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 240 255 3.7E-12 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 180 199 3.7E-12 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 444 6.7E-173 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 SUPERFAMILY SSF53738 2 187 7.85E-48 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 444 1.7E-12 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 SUPERFAMILY SSF53738 264 371 3.65E-29 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 445 44.744 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_21875 34bf2cbab842289ddc9e0ea45c039de4 447 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 102 111 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 6 322 6.2E-101 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 254 321 1.1E-16 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 115 134 6.6E-27 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 213 231 6.6E-27 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 4 17 6.6E-27 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 PRINTS PR00955 Flagellar motor switch protein FliM signature 90 106 6.6E-27 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 Pfam PF02154 Flagellar motor switch protein FliM 39 231 5.3E-71 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 Gene3D G3DSA:3.40.1550.10 45 233 2.9E-56 T 11-10-2018 IPR028976 CheC-like superfamily APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 PIRSF PIRSF002888 3 331 4.8E-91 T 11-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 SUPERFAMILY SSF101801 251 326 4.05E-12 T 11-10-2018 IPR036429 SpoA-like superfamily APT56_12085 b5d411e2dd77f24b737c8cb153be0bdb 335 SUPERFAMILY SSF103039 51 231 1.07E-19 T 11-10-2018 IPR028976 CheC-like superfamily APT56_12380 0c5e462e11a5d215f84387d519564f8c 396 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 219 379 1.2E-39 T 11-10-2018 IPR000160 GGDEF domain APT56_12380 0c5e462e11a5d215f84387d519564f8c 396 SMART SM00267 211 382 1.0E-43 T 11-10-2018 IPR000160 GGDEF domain APT56_12380 0c5e462e11a5d215f84387d519564f8c 396 SUPERFAMILY SSF55073 227 379 1.57E-43 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_12380 0c5e462e11a5d215f84387d519564f8c 396 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 378 8.1E-36 T 11-10-2018 IPR000160 GGDEF domain APT56_12380 0c5e462e11a5d215f84387d519564f8c 396 Gene3D G3DSA:3.30.70.270 217 381 6.2E-48 T 11-10-2018 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 PRINTS PR00981 Seryl-tRNA synthetase signature 288 300 4.0E-31 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 4.0E-31 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 PRINTS PR00981 Seryl-tRNA synthetase signature 340 353 4.0E-31 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 PRINTS PR00981 Seryl-tRNA synthetase signature 375 391 4.0E-31 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 PRINTS PR00981 Seryl-tRNA synthetase signature 300 313 4.0E-31 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 440 1.1E-152 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 445 39.047 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 PIRSF PIRSF001529 1 448 3.3E-165 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 Gene3D G3DSA:1.10.287.40 1 104 4.3E-22 T 11-10-2018 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 Gene3D G3DSA:3.30.930.10 105 447 8.3E-110 T 11-10-2018 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 248 423 3.0E-34 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 SUPERFAMILY SSF46589 1 112 1.52E-29 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.3E-28 T 11-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 APT56_05805 dbbc2f7a48369d49942a86c11c999c5d 448 SUPERFAMILY SSF55681 136 441 2.44E-95 T 11-10-2018 APT56_04640 7522d00bb0d1ec1c5685efd9239d650c 522 Pfam PF09312 SurA N-terminal domain 56 173 6.1E-34 T 11-10-2018 IPR015391 SurA N-terminal APT56_04640 7522d00bb0d1ec1c5685efd9239d650c 522 Hamap MF_01183 Chaperone SurA [surA]. 14 512 32.81 T 11-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 APT56_04640 7522d00bb0d1ec1c5685efd9239d650c 522 SUPERFAMILY SSF54534 369 468 9.81E-34 T 11-10-2018 APT56_04640 7522d00bb0d1ec1c5685efd9239d650c 522 Pfam PF13616 PPIC-type PPIASE domain 369 467 1.4E-26 T 11-10-2018 APT56_04640 7522d00bb0d1ec1c5685efd9239d650c 522 SUPERFAMILY SSF109998 56 259 4.51E-38 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily APT56_04640 7522d00bb0d1ec1c5685efd9239d650c 522 SUPERFAMILY SSF54534 231 330 1.37E-25 T 11-10-2018 APT56_04640 7522d00bb0d1ec1c5685efd9239d650c 522 Pfam PF00639 PPIC-type PPIASE domain 236 329 2.5E-18 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 APT56_04640 7522d00bb0d1ec1c5685efd9239d650c 522 Gene3D G3DSA:1.10.4030.30 53 223 4.6E-43 T 11-10-2018 APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 SUPERFAMILY SSF52540 4 243 1.31E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 Pfam PF08402 TOBE domain 271 339 1.4E-14 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 Gene3D G3DSA:3.40.50.300 1 238 2.3E-80 T 11-10-2018 APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 Pfam PF00005 ABC transporter 20 161 3.8E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 Gene3D G3DSA:2.40.50.100 267 342 1.1E-11 T 11-10-2018 APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 SMART SM00382 28 211 3.1E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 SUPERFAMILY SSF50331 236 344 4.62E-22 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_00935 cb609b29f86f8b87ad99e0dbacee1541 351 Gene3D G3DSA:2.40.50.140 285 330 1.1E-11 T 11-10-2018 APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 Pfam PF03466 LysR substrate binding domain 87 296 2.4E-49 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 Gene3D G3DSA:3.40.190.10 161 271 3.3E-78 T 11-10-2018 APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 SUPERFAMILY SSF46785 1 86 4.59E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 Gene3D G3DSA:3.40.190.10 92 294 3.3E-78 T 11-10-2018 APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 9.2E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 Gene3D G3DSA:1.10.10.10 1 85 5.1E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 SUPERFAMILY SSF53850 88 296 5.63E-43 T 11-10-2018 APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14715 f0e08f50fafa8609c7bdc75cca7eaa77 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_27445 c2c835ece3406df2f03ed5307685d439 105 Pfam PF09723 Zinc ribbon domain 1 41 3.2E-16 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_27445 c2c835ece3406df2f03ed5307685d439 105 SMART SM00834 1 42 3.3E-18 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_27445 c2c835ece3406df2f03ed5307685d439 105 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 7.7E-22 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_15215 823225f0e19f44d8d7173ca7ae89eeb8 271 SMART SM00062 35 256 0.0076 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_15215 823225f0e19f44d8d7173ca7ae89eeb8 271 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 54 252 2.5E-12 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_15215 823225f0e19f44d8d7173ca7ae89eeb8 271 Gene3D G3DSA:3.40.190.10 121 216 1.1E-13 T 11-10-2018 APT56_15215 823225f0e19f44d8d7173ca7ae89eeb8 271 SUPERFAMILY SSF53850 29 253 1.09E-15 T 11-10-2018 APT56_15215 823225f0e19f44d8d7173ca7ae89eeb8 271 Gene3D G3DSA:3.40.190.10 55 252 1.1E-13 T 11-10-2018 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 Pfam PF01479 S4 domain 109 152 9.5E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 Gene3D G3DSA:3.30.70.580 171 330 3.1E-45 T 11-10-2018 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 208 222 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 SUPERFAMILY SSF55120 169 333 1.2E-38 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 174 334 8.7E-50 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 Pfam PF00849 RNA pseudouridylate synthase 170 303 2.6E-15 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 SUPERFAMILY SSF55174 108 199 1.31E-17 T 11-10-2018 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 Gene3D G3DSA:3.10.290.10 106 160 4.4E-21 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 SMART SM00363 107 165 7.9E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_07895 bfc5e2707550da37a1e6d564b1b077c6 585 Gene3D G3DSA:3.30.70.1560 232 322 3.1E-45 T 11-10-2018 APT56_18805 2d4aafe06f8dad54a0817dccaaae85d2 303 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 17 256 1.1E-9 T 11-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 APT56_18805 2d4aafe06f8dad54a0817dccaaae85d2 303 Gene3D G3DSA:3.40.50.2300 17 257 1.7E-33 T 11-10-2018 APT56_18805 2d4aafe06f8dad54a0817dccaaae85d2 303 Gene3D G3DSA:3.40.50.2300 108 225 1.7E-33 T 11-10-2018 APT56_26430 7fd17c4b6a72f3981629b108265db338 310 SUPERFAMILY SSF53335 37 270 1.72E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_26430 7fd17c4b6a72f3981629b108265db338 310 Pfam PF08241 Methyltransferase domain 58 167 2.4E-15 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 APT56_26430 7fd17c4b6a72f3981629b108265db338 310 Gene3D G3DSA:3.40.50.150 46 242 1.3E-25 T 11-10-2018 APT56_14550 4ff2308caf47ed410112f2c95ea2fd84 204 Gene3D G3DSA:1.20.1050.10 79 191 9.3E-69 T 11-10-2018 APT56_14550 4ff2308caf47ed410112f2c95ea2fd84 204 SUPERFAMILY SSF52833 1 80 7.78E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_14550 4ff2308caf47ed410112f2c95ea2fd84 204 Pfam PF00043 Glutathione S-transferase, C-terminal domain 116 188 4.0E-8 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_14550 4ff2308caf47ed410112f2c95ea2fd84 204 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 71 6.6E-10 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_14550 4ff2308caf47ed410112f2c95ea2fd84 204 Gene3D G3DSA:3.40.30.10 2 200 9.3E-69 T 11-10-2018 APT56_14550 4ff2308caf47ed410112f2c95ea2fd84 204 SUPERFAMILY SSF47616 78 202 1.24E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_06995 8e475d5e4fd7eb44fb0c0f634228644c 232 Pfam PF01144 Coenzyme A transferase 6 217 3.8E-80 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_06995 8e475d5e4fd7eb44fb0c0f634228644c 232 Gene3D G3DSA:3.40.1080.10 1 227 2.0E-97 T 11-10-2018 APT56_06995 8e475d5e4fd7eb44fb0c0f634228644c 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 217 4.3E-80 T 11-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 APT56_06995 8e475d5e4fd7eb44fb0c0f634228644c 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 11-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 APT56_06995 8e475d5e4fd7eb44fb0c0f634228644c 232 SUPERFAMILY SSF100950 2 226 6.8E-89 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_06995 8e475d5e4fd7eb44fb0c0f634228644c 232 SMART SM00882 5 217 1.2E-93 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 Gene3D G3DSA:1.10.540.10 3 115 1.2E-29 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 364 9.5E-34 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 PIRSF PIRSF016578 236 383 7.6E-7 T 11-10-2018 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 PIRSF PIRSF016578 2 195 3.0E-9 T 11-10-2018 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 SUPERFAMILY SSF56645 5 243 3.8E-62 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 Gene3D G3DSA:2.40.110.10 120 235 5.2E-34 T 11-10-2018 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 115 1.4E-25 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 SUPERFAMILY SSF47203 229 384 2.74E-43 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 338 357 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 Gene3D G3DSA:1.20.140.10 236 380 9.1E-37 T 11-10-2018 APT56_14855 8245e12b1a74cf8f8c50118e78c6609f 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 218 1.1E-21 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_23480 2ff2d52053513d3e734f9b1033ee5d89 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 121 1.5E-7 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_23480 2ff2d52053513d3e734f9b1033ee5d89 127 SUPERFAMILY SSF54593 7 126 1.88E-21 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_23480 2ff2d52053513d3e734f9b1033ee5d89 127 Gene3D G3DSA:3.10.180.10 3 127 1.3E-29 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_09095 46b3538c3eecfe759200764c0abe34a4 382 Pfam PF13692 Glycosyl transferases group 1 211 340 4.8E-18 T 11-10-2018 APT56_09095 46b3538c3eecfe759200764c0abe34a4 382 Gene3D G3DSA:3.40.50.2000 182 340 1.4E-61 T 11-10-2018 APT56_09095 46b3538c3eecfe759200764c0abe34a4 382 SUPERFAMILY SSF53756 13 377 3.87E-56 T 11-10-2018 APT56_09095 46b3538c3eecfe759200764c0abe34a4 382 Gene3D G3DSA:3.40.50.2000 25 181 1.4E-61 T 11-10-2018 APT56_09095 46b3538c3eecfe759200764c0abe34a4 382 Pfam PF13439 Glycosyltransferase Family 4 25 182 1.2E-13 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_25025 7e7b767698bb0ee48d3b097a9fe0a857 400 TIGRFAM TIGR02484 CitB: CitB domain protein 38 394 4.3E-126 T 11-10-2018 IPR012830 Citrate utilization protein B APT56_25025 7e7b767698bb0ee48d3b097a9fe0a857 400 SUPERFAMILY SSF54862 45 96 2.83E-6 T 11-10-2018 APT56_25025 7e7b767698bb0ee48d3b097a9fe0a857 400 SUPERFAMILY SSF103501 179 391 8.5E-32 T 11-10-2018 IPR036197 NarG-like superfamily APT56_01145 63115943bd771fa852c241e4db2051ff 213 Pfam PF00355 Rieske [2Fe-2S] domain 71 193 4.2E-12 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_01145 63115943bd771fa852c241e4db2051ff 213 PRINTS PR00162 Rieske 2Fe-2S subunit signature 165 177 9.9E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT56_01145 63115943bd771fa852c241e4db2051ff 213 PRINTS PR00162 Rieske 2Fe-2S subunit signature 178 190 9.9E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT56_01145 63115943bd771fa852c241e4db2051ff 213 PRINTS PR00162 Rieske 2Fe-2S subunit signature 133 144 9.9E-7 T 11-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 APT56_01145 63115943bd771fa852c241e4db2051ff 213 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 24 206 1.1E-61 T 11-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 APT56_01145 63115943bd771fa852c241e4db2051ff 213 Gene3D G3DSA:2.102.10.10 56 206 1.7E-46 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_01145 63115943bd771fa852c241e4db2051ff 213 SUPERFAMILY SSF50022 44 211 4.58E-39 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 Pfam PF00583 Acetyltransferase (GNAT) family 346 423 9.3E-9 T 11-10-2018 IPR000182 GNAT domain APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 Gene3D G3DSA:3.40.1160.10 20 304 8.2E-84 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 Pfam PF00696 Amino acid kinase family 39 271 1.2E-29 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 22 452 2.2E-176 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 SUPERFAMILY SSF53633 19 303 1.33E-59 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 Gene3D G3DSA:3.40.630.30 305 452 3.2E-38 T 11-10-2018 APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 PIRSF PIRSF000423 12 452 1.5E-183 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 SUPERFAMILY SSF55729 308 430 2.36E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_09040 05973d48707d0e93900fff1b779a7e2a 452 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 452 193.592 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 APT56_18850 e5094ee561dc77087a780a06bdb77de5 430 Gene3D G3DSA:3.40.50.300 157 430 3.2E-104 T 11-10-2018 APT56_18850 e5094ee561dc77087a780a06bdb77de5 430 SUPERFAMILY SSF52540 220 401 2.13E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18850 e5094ee561dc77087a780a06bdb77de5 430 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 191 413 1.1E-106 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related APT56_18850 e5094ee561dc77087a780a06bdb77de5 430 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 189 414 4.5E-119 T 11-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 APT56_19940 d190ae48d9c373bb64970683121b6c3f 369 Gene3D G3DSA:3.90.25.10 193 348 3.6E-165 T 11-10-2018 APT56_19940 d190ae48d9c373bb64970683121b6c3f 369 SUPERFAMILY SSF51735 3 349 7.62E-85 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19940 d190ae48d9c373bb64970683121b6c3f 369 Gene3D G3DSA:3.40.50.720 5 334 3.6E-165 T 11-10-2018 APT56_19940 d190ae48d9c373bb64970683121b6c3f 369 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 343 5.0E-158 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_19940 d190ae48d9c373bb64970683121b6c3f 369 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 353 56.999 T 11-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 APT56_19940 d190ae48d9c373bb64970683121b6c3f 369 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 350 9.0E-176 T 11-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 APT56_12685 3dc6fb2bc4a175dca5bf76756c959f76 342 Gene3D G3DSA:3.40.190.10 111 209 1.3E-47 T 11-10-2018 APT56_12685 3dc6fb2bc4a175dca5bf76756c959f76 342 SUPERFAMILY SSF53850 29 254 3.29E-40 T 11-10-2018 APT56_12685 3dc6fb2bc4a175dca5bf76756c959f76 342 Pfam PF09084 NMT1/THI5 like 56 252 9.9E-17 T 11-10-2018 IPR015168 SsuA/THI5-like APT56_12685 3dc6fb2bc4a175dca5bf76756c959f76 342 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 32 338 1.2E-136 T 11-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 APT56_12685 3dc6fb2bc4a175dca5bf76756c959f76 342 Gene3D G3DSA:1.10.8.450 245 263 1.3E-47 T 11-10-2018 APT56_12685 3dc6fb2bc4a175dca5bf76756c959f76 342 SMART SM00062 30 251 0.0058 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_12685 3dc6fb2bc4a175dca5bf76756c959f76 342 Gene3D G3DSA:3.40.190.10 31 244 1.3E-47 T 11-10-2018 APT56_19740 a7aba49e3a52c8b481fcbe77706aadce 700 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 17 61 5.1E-5 T 11-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal APT56_04690 9be25d68891e7d5e4dcc36b3760d08d6 242 SUPERFAMILY SSF69593 3 239 3.92E-39 T 11-10-2018 APT56_04690 9be25d68891e7d5e4dcc36b3760d08d6 242 SMART SM00563 71 186 3.9E-30 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APT56_04690 9be25d68891e7d5e4dcc36b3760d08d6 242 Pfam PF01553 Acyltransferase 59 183 7.3E-20 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 Gene3D G3DSA:3.40.50.150 88 281 5.3E-68 T 11-10-2018 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 PIRSF PIRSF000410 6 281 1.0E-95 T 11-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 Gene3D G3DSA:1.10.155.10 10 87 3.2E-27 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 Pfam PF03705 CheR methyltransferase, all-alpha domain 22 74 3.3E-16 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 SUPERFAMILY SSF47757 12 88 1.23E-22 T 11-10-2018 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 PRINTS PR00996 Glutamate methyltransferase family signature 82 94 9.5E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 PRINTS PR00996 Glutamate methyltransferase family signature 221 235 9.5E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 PRINTS PR00996 Glutamate methyltransferase family signature 43 56 9.5E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 PRINTS PR00996 Glutamate methyltransferase family signature 240 263 9.5E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 PRINTS PR00996 Glutamate methyltransferase family signature 115 135 9.5E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 PRINTS PR00996 Glutamate methyltransferase family signature 149 165 9.5E-46 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 Pfam PF01739 CheR methyltransferase, SAM binding domain 89 276 1.5E-56 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 SUPERFAMILY SSF53335 89 278 1.13E-58 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_11925 45fa9f49f879a0596b5266d8643e5607 284 SMART SM00138 21 281 1.3E-102 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_15745 81816ea80423657a066ee21f86e9038a 325 Pfam PF01545 Cation efflux family 30 223 7.5E-43 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT56_15745 81816ea80423657a066ee21f86e9038a 325 Pfam PF16916 Dimerisation domain of Zinc Transporter 228 303 3.7E-22 T 11-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain APT56_15745 81816ea80423657a066ee21f86e9038a 325 SUPERFAMILY SSF161111 25 224 1.23E-52 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APT56_15745 81816ea80423657a066ee21f86e9038a 325 Gene3D G3DSA:3.30.70.1350 224 305 2.4E-21 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 APT56_15745 81816ea80423657a066ee21f86e9038a 325 SUPERFAMILY SSF160240 226 305 8.5E-22 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 APT56_15745 81816ea80423657a066ee21f86e9038a 325 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 27 303 2.1E-66 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT56_15745 81816ea80423657a066ee21f86e9038a 325 Gene3D G3DSA:1.20.1510.10 25 223 3.5E-58 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APT56_10615 cc090161ff9c3794e5a09f51a56a4e19 561 Pfam PF00501 AMP-binding enzyme 115 284 1.6E-10 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_10615 cc090161ff9c3794e5a09f51a56a4e19 561 SUPERFAMILY SSF56801 17 430 1.7E-46 T 11-10-2018 APT56_10615 cc090161ff9c3794e5a09f51a56a4e19 561 Gene3D G3DSA:3.30.300.30 334 442 6.4E-11 T 11-10-2018 APT56_10615 cc090161ff9c3794e5a09f51a56a4e19 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 129 140 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_10615 cc090161ff9c3794e5a09f51a56a4e19 561 Gene3D G3DSA:3.10.129.10 452 560 3.2E-28 T 11-10-2018 APT56_10615 cc090161ff9c3794e5a09f51a56a4e19 561 SUPERFAMILY SSF54637 458 551 2.1E-11 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_10615 cc090161ff9c3794e5a09f51a56a4e19 561 Gene3D G3DSA:3.40.50.12780 101 332 5.6E-28 T 11-10-2018 APT56_25290 a476687c827036067efee7c5e64401d2 491 Gene3D G3DSA:3.40.605.10 23 478 4.4E-171 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_25290 a476687c827036067efee7c5e64401d2 491 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_25290 a476687c827036067efee7c5e64401d2 491 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_25290 a476687c827036067efee7c5e64401d2 491 Pfam PF00171 Aldehyde dehydrogenase family 15 479 4.1E-168 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_25290 a476687c827036067efee7c5e64401d2 491 SUPERFAMILY SSF53720 8 486 2.23E-161 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_25290 a476687c827036067efee7c5e64401d2 491 Gene3D G3DSA:3.40.309.10 260 454 4.4E-171 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_15635 8603f446b7d821c903bc0e73acf6c6ee 126 Pfam PF11720 Peptidase inhibitor I78 family 62 126 1.8E-22 T 11-10-2018 IPR021719 Proteinase inhibitor I78 APT56_15635 8603f446b7d821c903bc0e73acf6c6ee 126 Gene3D G3DSA:3.30.10.10 58 125 7.8E-18 T 11-10-2018 APT56_23970 6131d713e48af4ae68295ad718d008f9 534 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 232 240 - T 11-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 APT56_23970 6131d713e48af4ae68295ad718d008f9 534 Gene3D G3DSA:3.30.470.30 207 408 5.4E-47 T 11-10-2018 APT56_23970 6131d713e48af4ae68295ad718d008f9 534 SUPERFAMILY SSF50249 413 533 2.74E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_23970 6131d713e48af4ae68295ad718d008f9 534 Gene3D G3DSA:2.40.50.140 412 534 1.2E-28 T 11-10-2018 APT56_23970 6131d713e48af4ae68295ad718d008f9 534 Pfam PF01068 ATP dependent DNA ligase domain 227 408 6.0E-33 T 11-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 APT56_23970 6131d713e48af4ae68295ad718d008f9 534 Pfam PF04679 ATP dependent DNA ligase C terminal region 429 518 5.2E-10 T 11-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 APT56_23970 6131d713e48af4ae68295ad718d008f9 534 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 2 532 4.9E-183 T 11-10-2018 IPR026333 ATP-dependent DNA ligase, PP_1105 family APT56_23970 6131d713e48af4ae68295ad718d008f9 534 SUPERFAMILY SSF56091 206 408 1.09E-52 T 11-10-2018 APT56_23970 6131d713e48af4ae68295ad718d008f9 534 Pfam PF04675 DNA ligase N terminus 3 166 4.4E-17 T 11-10-2018 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 APT56_23970 6131d713e48af4ae68295ad718d008f9 534 SUPERFAMILY SSF117018 4 172 3.4E-5 T 11-10-2018 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily GO:0003677|GO:0003910|GO:0006281|GO:0006310 APT56_24420 1d57f5f1b2667387abd0a8edb8f65404 188 SUPERFAMILY SSF53335 5 180 7.41E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_24420 1d57f5f1b2667387abd0a8edb8f65404 188 PIRSF PIRSF004553 5 185 2.3E-39 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 APT56_24420 1d57f5f1b2667387abd0a8edb8f65404 188 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 4 182 5.7E-38 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 APT56_24420 1d57f5f1b2667387abd0a8edb8f65404 188 Pfam PF03602 Conserved hypothetical protein 95 6 181 9.7E-46 T 11-10-2018 APT56_24420 1d57f5f1b2667387abd0a8edb8f65404 188 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 123 129 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT56_24420 1d57f5f1b2667387abd0a8edb8f65404 188 Gene3D G3DSA:3.40.50.150 1 186 6.0E-49 T 11-10-2018 APT56_18095 aa5b4d9ebf98d38be0ec21d18a4bd8b4 492 Pfam PF02321 Outer membrane efflux protein 73 250 1.5E-28 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_18095 aa5b4d9ebf98d38be0ec21d18a4bd8b4 492 Pfam PF02321 Outer membrane efflux protein 288 471 4.6E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_18095 aa5b4d9ebf98d38be0ec21d18a4bd8b4 492 Gene3D G3DSA:2.20.200.10 110 362 6.9E-120 T 11-10-2018 APT56_18095 aa5b4d9ebf98d38be0ec21d18a4bd8b4 492 Gene3D G3DSA:1.20.1600.10 63 474 6.9E-120 T 11-10-2018 APT56_18095 aa5b4d9ebf98d38be0ec21d18a4bd8b4 492 SUPERFAMILY SSF56954 11 476 9.02E-94 T 11-10-2018 APT56_18095 aa5b4d9ebf98d38be0ec21d18a4bd8b4 492 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 22 473 3.9E-99 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_16720 b915e0113821bce35ba534d943118442 486 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 472 8.1E-164 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 APT56_16720 b915e0113821bce35ba534d943118442 486 SUPERFAMILY SSF54631 94 201 7.44E-28 T 11-10-2018 APT56_16720 b915e0113821bce35ba534d943118442 486 SMART SM00116 156 204 2.6E-6 T 11-10-2018 IPR000644 CBS domain APT56_16720 b915e0113821bce35ba534d943118442 486 SMART SM00116 95 142 3.6E-11 T 11-10-2018 IPR000644 CBS domain APT56_16720 b915e0113821bce35ba534d943118442 486 SUPERFAMILY SSF51412 2 476 1.57E-125 T 11-10-2018 APT56_16720 b915e0113821bce35ba534d943118442 486 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 453 7.5E-191 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 APT56_16720 b915e0113821bce35ba534d943118442 486 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 293 305 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 APT56_16720 b915e0113821bce35ba534d943118442 486 Gene3D G3DSA:3.20.20.70 1 485 1.5E-215 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_16720 b915e0113821bce35ba534d943118442 486 Pfam PF00571 CBS domain 95 138 1.0E-9 T 11-10-2018 IPR000644 CBS domain APT56_16720 b915e0113821bce35ba534d943118442 486 Pfam PF00571 CBS domain 149 201 1.2E-4 T 11-10-2018 IPR000644 CBS domain APT56_16720 b915e0113821bce35ba534d943118442 486 SMART SM01240 6 472 0.0 T 11-10-2018 APT56_16720 b915e0113821bce35ba534d943118442 486 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 485 87.003 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 APT56_16720 b915e0113821bce35ba534d943118442 486 PIRSF PIRSF000130 1 486 6.9E-206 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 APT56_21245 9366daf8c808d9260b24bd023019dfef 116 Gene3D G3DSA:3.60.90.10 2 116 2.1E-40 T 11-10-2018 APT56_21245 9366daf8c808d9260b24bd023019dfef 116 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 7 116 2.2E-35 T 11-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 APT56_21245 9366daf8c808d9260b24bd023019dfef 116 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 4 116 24.989 T 11-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 APT56_21245 9366daf8c808d9260b24bd023019dfef 116 Pfam PF02675 S-adenosylmethionine decarboxylase 10 116 2.3E-35 T 11-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 APT56_21245 9366daf8c808d9260b24bd023019dfef 116 SUPERFAMILY SSF56276 7 116 4.32E-33 T 11-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 APT56_06340 1d0d59125f2e746344890900814c0f9b 298 Pfam PF03466 LysR substrate binding domain 87 288 4.4E-42 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_06340 1d0d59125f2e746344890900814c0f9b 298 Gene3D G3DSA:3.40.190.10 163 264 5.5E-23 T 11-10-2018 APT56_06340 1d0d59125f2e746344890900814c0f9b 298 Gene3D G3DSA:1.10.10.10 1 90 3.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06340 1d0d59125f2e746344890900814c0f9b 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06340 1d0d59125f2e746344890900814c0f9b 298 SUPERFAMILY SSF53850 87 286 3.8E-37 T 11-10-2018 APT56_06340 1d0d59125f2e746344890900814c0f9b 298 Gene3D G3DSA:3.40.190.10 91 274 5.5E-23 T 11-10-2018 APT56_06340 1d0d59125f2e746344890900814c0f9b 298 SUPERFAMILY SSF46785 1 109 8.31E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_09030 3cb68e1d146f758f70f40b02262ab1a3 650 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 8 447 3.0E-189 T 11-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_09030 3cb68e1d146f758f70f40b02262ab1a3 650 Pfam PF05506 Domain of unknown function (DUF756) 562 629 2.6E-7 T 11-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_09030 3cb68e1d146f758f70f40b02262ab1a3 650 Pfam PF05506 Domain of unknown function (DUF756) 459 545 4.0E-21 T 11-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_09030 3cb68e1d146f758f70f40b02262ab1a3 650 Gene3D G3DSA:3.40.720.10 25 194 1.4E-24 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_09030 3cb68e1d146f758f70f40b02262ab1a3 650 Pfam PF04185 Phosphoesterase family 35 422 2.2E-115 T 11-10-2018 IPR007312 Phosphoesterase GO:0016788 APT56_14770 7b5fc8568a03ea0a0a6c17211ff7a0dd 556 Gene3D G3DSA:1.10.3720.10 294 554 4.3E-33 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14770 7b5fc8568a03ea0a0a6c17211ff7a0dd 556 SUPERFAMILY SSF161098 291 549 3.38E-38 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14770 7b5fc8568a03ea0a0a6c17211ff7a0dd 556 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 277 2.6E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_14770 7b5fc8568a03ea0a0a6c17211ff7a0dd 556 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 382 545 3.1E-8 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_14770 7b5fc8568a03ea0a0a6c17211ff7a0dd 556 Gene3D G3DSA:1.10.3720.10 22 280 6.4E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14770 7b5fc8568a03ea0a0a6c17211ff7a0dd 556 SUPERFAMILY SSF161098 20 271 1.57E-41 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18380 e66b3c0439644b020c808b7915c2b3f7 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_18380 e66b3c0439644b020c808b7915c2b3f7 488 Pfam PF00171 Aldehyde dehydrogenase family 15 474 4.4E-170 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_18380 e66b3c0439644b020c808b7915c2b3f7 488 Gene3D G3DSA:3.40.309.10 248 444 1.4E-176 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_18380 e66b3c0439644b020c808b7915c2b3f7 488 Gene3D G3DSA:3.40.605.10 7 472 1.4E-176 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_18380 e66b3c0439644b020c808b7915c2b3f7 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_18380 e66b3c0439644b020c808b7915c2b3f7 488 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 3 487 1.6E-221 T 11-10-2018 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 APT56_18380 e66b3c0439644b020c808b7915c2b3f7 488 SUPERFAMILY SSF53720 3 480 7.33E-165 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 SMART SM00963 121 197 4.1E-16 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 SUPERFAMILY SSF52540 208 414 1.73E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 Pfam PF02881 SRP54-type protein, helical bundle domain 131 191 1.4E-9 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 140 415 56.711 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 Gene3D G3DSA:1.20.120.140 119 413 5.4E-101 T 11-10-2018 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 SMART SM00382 210 388 4.0E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 140 413 2.0E-94 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 SUPERFAMILY SSF47364 116 190 9.68E-18 T 11-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 SMART SM00962 211 415 4.8E-103 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 Pfam PF00448 SRP54-type protein, GTPase domain 212 414 2.5E-65 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_24415 315ebbdef369fbd3fe4c563dc39067dd 416 Gene3D G3DSA:3.40.50.300 208 403 5.4E-101 T 11-10-2018 APT56_26040 2a58e668d7131d670130580bd0d160c5 246 SUPERFAMILY SSF51735 9 241 4.45E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26040 2a58e668d7131d670130580bd0d160c5 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 238 8.1E-56 T 11-10-2018 APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 Gene3D G3DSA:3.40.50.720 5 242 1.3E-74 T 11-10-2018 APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 1.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26040 2a58e668d7131d670130580bd0d160c5 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 180 4.1E-4 T 11-10-2018 APT56_21820 2137386398e2f5fded13a779c7349517 155 SUPERFAMILY SSF69118 5 143 3.77E-42 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_21820 2137386398e2f5fded13a779c7349517 155 Gene3D G3DSA:1.20.1290.10 1 151 8.4E-49 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_21820 2137386398e2f5fded13a779c7349517 155 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 77 3.3E-14 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_21820 2137386398e2f5fded13a779c7349517 155 Pfam PF02627 Carboxymuconolactone decarboxylase family 13 94 3.5E-16 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_02405 14ce11304ed34a5e6e8f0964bc581e4c 254 Gene3D G3DSA:3.40.50.300 1 252 3.3E-56 T 11-10-2018 APT56_02405 14ce11304ed34a5e6e8f0964bc581e4c 254 Pfam PF00005 ABC transporter 24 179 5.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_02405 14ce11304ed34a5e6e8f0964bc581e4c 254 SMART SM00382 32 225 7.6E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02405 14ce11304ed34a5e6e8f0964bc581e4c 254 SUPERFAMILY SSF52540 6 249 5.77E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02405 14ce11304ed34a5e6e8f0964bc581e4c 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 248 1.2E-8 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_19105 a093fcd01f9145df45428cd7c249685e 147 TIGRFAM TIGR00673 cynS: cyanase 6 147 1.9E-50 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 Hamap MF_00535 Cyanate hydratase [cynS]. 1 147 80.184 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 PIRSF PIRSF001263 1 147 2.4E-50 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 SUPERFAMILY SSF47413 1 77 8.94E-21 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 Gene3D G3DSA:3.30.1160.10 81 147 3.2E-34 T 11-10-2018 IPR036581 Cyanate lyase, C-terminal domain superfamily GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 SUPERFAMILY SSF55234 80 147 6.02E-30 T 11-10-2018 IPR036581 Cyanate lyase, C-terminal domain superfamily GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 Pfam PF02560 Cyanate lyase C-terminal domain 79 145 1.5E-35 T 11-10-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 PRINTS PR01693 Cyanase signature 14 29 1.1E-26 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 PRINTS PR01693 Cyanase signature 132 142 1.1E-26 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 PRINTS PR01693 Cyanase signature 101 117 1.1E-26 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 PRINTS PR01693 Cyanase signature 34 51 1.1E-26 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 PRINTS PR01693 Cyanase signature 83 97 1.1E-26 T 11-10-2018 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 SMART SM01116 75 147 4.4E-49 T 11-10-2018 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00910+4.2.1.104 APT56_19105 a093fcd01f9145df45428cd7c249685e 147 Gene3D G3DSA:1.10.260.40 1 80 6.3E-29 T 11-10-2018 APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1020 1174 2.4E-6 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Gene3D G3DSA:3.90.320.10 1007 1183 6.7E-6 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Pfam PF13361 UvrD-like helicase C-terminal domain 474 641 1.6E-6 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 SUPERFAMILY SSF52980 1020 1169 1.98E-8 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Gene3D G3DSA:3.40.50.300 2 195 1.5E-26 T 11-10-2018 APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Gene3D G3DSA:3.40.50.300 796 939 8.7E-20 T 11-10-2018 APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Gene3D G3DSA:3.40.50.300 353 495 3.6E-27 T 11-10-2018 APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 SUPERFAMILY SSF52540 9 924 1.6E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Pfam PF13361 UvrD-like helicase C-terminal domain 820 918 2.4E-12 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Pfam PF00580 UvrD/REP helicase N-terminal domain 14 461 4.6E-42 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 APT56_22035 18c272c0a77fb574711ac3e27ec69dd2 1185 Gene3D G3DSA:3.40.50.300 540 635 3.4E-12 T 11-10-2018 APT56_05005 6bfcc84f9cb67b31959514a185ab7819 103 Gene3D G3DSA:2.102.10.10 2 103 6.6E-35 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_05005 6bfcc84f9cb67b31959514a185ab7819 103 SUPERFAMILY SSF50022 3 103 5.63E-32 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_05005 6bfcc84f9cb67b31959514a185ab7819 103 Pfam PF00355 Rieske [2Fe-2S] domain 4 91 3.8E-19 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_11260 a8093330ff5e668b874dd0b49b77ab3f 298 SUPERFAMILY SSF52317 1 191 2.38E-50 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_11260 a8093330ff5e668b874dd0b49b77ab3f 298 SUPERFAMILY SSF46689 213 260 7.26E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_11260 a8093330ff5e668b874dd0b49b77ab3f 298 Gene3D G3DSA:3.40.50.880 1 207 2.1E-65 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_11260 a8093330ff5e668b874dd0b49b77ab3f 298 Gene3D G3DSA:1.10.10.60 208 286 4.5E-12 T 11-10-2018 APT56_11260 a8093330ff5e668b874dd0b49b77ab3f 298 SMART SM00342 226 296 0.0016 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_11260 a8093330ff5e668b874dd0b49b77ab3f 298 Pfam PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family 219 260 8.8E-12 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_11260 a8093330ff5e668b874dd0b49b77ab3f 298 Pfam PF01965 DJ-1/PfpI family 1 170 1.4E-25 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_26595 dbd3c87da1ddceb27907595b53c199c9 183 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 9 178 37.31 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 APT56_26595 dbd3c87da1ddceb27907595b53c199c9 183 SUPERFAMILY SSF53271 10 179 2.75E-54 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APT56_26595 dbd3c87da1ddceb27907595b53c199c9 183 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 178 2.3E-68 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 APT56_26595 dbd3c87da1ddceb27907595b53c199c9 183 Gene3D G3DSA:3.40.50.2020 1 181 1.3E-65 T 11-10-2018 APT56_26595 dbd3c87da1ddceb27907595b53c199c9 183 Pfam PF00156 Phosphoribosyl transferase domain 50 158 1.1E-17 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 SMART SM00448 4 117 5.6E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 396 413 8.4E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 413 433 8.4E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 Gene3D G3DSA:1.10.8.60 307 380 3.7E-15 T 11-10-2018 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 SUPERFAMILY SSF46689 384 429 1.08E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 Pfam PF00158 Sigma-54 interaction domain 146 302 6.7E-53 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 SUPERFAMILY SSF52172 4 180 1.05E-28 T 11-10-2018 IPR011006 CheY-like superfamily APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 SUPERFAMILY SSF52540 141 375 1.97E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 Pfam PF00072 Response regulator receiver domain 6 117 7.2E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 Gene3D G3DSA:3.40.50.2300 1 132 1.1E-22 T 11-10-2018 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 Gene3D G3DSA:3.40.50.300 133 306 7.3E-52 T 11-10-2018 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 Gene3D G3DSA:1.10.10.60 391 431 1.4E-10 T 11-10-2018 APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 SMART SM00382 156 299 8.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19415 eaf2705e1fcdd53459f4d4549ff1a0fe 438 Pfam PF02954 Bacterial regulatory protein, Fis family 393 428 5.9E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_10280 2b88a9c64a5e807985ed27c7dd7f8cee 216 Gene3D G3DSA:1.10.1220.10 1 61 9.0E-19 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APT56_10280 2b88a9c64a5e807985ed27c7dd7f8cee 216 Pfam PF03869 Arc-like DNA binding domain 9 48 2.8E-10 T 11-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 APT56_10280 2b88a9c64a5e807985ed27c7dd7f8cee 216 SUPERFAMILY SSF47598 10 52 1.87E-9 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 SUPERFAMILY SSF56059 110 311 3.89E-55 T 11-10-2018 APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 14 376 40.694 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 Gene3D G3DSA:3.30.1490.20 120 186 1.6E-20 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 15 379 3.7E-116 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 SUPERFAMILY SSF52440 11 107 8.92E-26 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 Gene3D G3DSA:3.30.470.20 188 392 1.8E-77 T 11-10-2018 APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 Pfam PF02222 ATP-grasp domain 120 291 9.2E-46 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 SUPERFAMILY SSF51246 315 390 1.02E-16 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APT56_22295 85da81e4df3fb4d9dff944fb2f11c6f3 396 Gene3D G3DSA:3.40.50.20 8 119 3.3E-40 T 11-10-2018 APT56_21720 8608c2fb126980bbe63d1c3f996048fd 146 SMART SM00116 15 62 7.2E-8 T 11-10-2018 IPR000644 CBS domain APT56_21720 8608c2fb126980bbe63d1c3f996048fd 146 SMART SM00116 80 127 9.4E-8 T 11-10-2018 IPR000644 CBS domain APT56_21720 8608c2fb126980bbe63d1c3f996048fd 146 Pfam PF00571 CBS domain 12 62 2.6E-11 T 11-10-2018 IPR000644 CBS domain APT56_21720 8608c2fb126980bbe63d1c3f996048fd 146 Pfam PF00571 CBS domain 73 124 2.0E-11 T 11-10-2018 IPR000644 CBS domain APT56_21720 8608c2fb126980bbe63d1c3f996048fd 146 SUPERFAMILY SSF54631 10 142 3.16E-33 T 11-10-2018 APT56_21720 8608c2fb126980bbe63d1c3f996048fd 146 Gene3D G3DSA:3.10.580.10 1 132 1.2E-45 T 11-10-2018 APT56_19160 3672a026186c56e2a9b3b3508dd3a349 538 Pfam PF08479 POTRA domain, ShlB-type 46 119 2.8E-16 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type APT56_19160 3672a026186c56e2a9b3b3508dd3a349 538 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 182 500 5.6E-20 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal APT56_19160 3672a026186c56e2a9b3b3508dd3a349 538 Gene3D G3DSA:3.10.20.310 34 120 1.7E-14 T 11-10-2018 APT56_19160 3672a026186c56e2a9b3b3508dd3a349 538 Gene3D G3DSA:2.40.160.50 162 538 6.1E-68 T 11-10-2018 APT56_06910 7c695dff5aea592bdfe5d3c32de6121f 306 Gene3D G3DSA:3.40.190.290 92 288 4.6E-35 T 11-10-2018 APT56_06910 7c695dff5aea592bdfe5d3c32de6121f 306 SUPERFAMILY SSF53850 91 288 5.61E-38 T 11-10-2018 APT56_06910 7c695dff5aea592bdfe5d3c32de6121f 306 Pfam PF03466 LysR substrate binding domain 89 287 7.1E-34 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_06910 7c695dff5aea592bdfe5d3c32de6121f 306 SUPERFAMILY SSF46785 1 111 3.52E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_06910 7c695dff5aea592bdfe5d3c32de6121f 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 4.8E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06910 7c695dff5aea592bdfe5d3c32de6121f 306 Gene3D G3DSA:1.10.10.10 2 84 7.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11455 cd2fe67a76c3c0b9daf44026b3e5f70f 247 SUPERFAMILY SSF47240 16 160 2.2E-12 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_11455 cd2fe67a76c3c0b9daf44026b3e5f70f 247 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 3 237 3.0E-22 T 11-10-2018 IPR025859 P-aminobenzoate N-oxygenase AurF APT56_22145 d363777b0266698446542b5998d851e8 397 Gene3D G3DSA:1.20.140.10 245 397 3.8E-43 T 11-10-2018 APT56_22145 d363777b0266698446542b5998d851e8 397 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 132 7.5E-34 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_22145 d363777b0266698446542b5998d851e8 397 SUPERFAMILY SSF47203 246 395 3.54E-43 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_22145 d363777b0266698446542b5998d851e8 397 Gene3D G3DSA:1.10.540.10 2 134 5.5E-42 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_22145 d363777b0266698446542b5998d851e8 397 SUPERFAMILY SSF56645 7 243 2.49E-76 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_22145 d363777b0266698446542b5998d851e8 397 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 244 389 3.2E-29 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_22145 d363777b0266698446542b5998d851e8 397 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 231 9.2E-21 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_22145 d363777b0266698446542b5998d851e8 397 Gene3D G3DSA:2.40.110.10 135 243 1.3E-36 T 11-10-2018 APT56_22145 d363777b0266698446542b5998d851e8 397 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 349 368 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_06565 fa794fc922615aa4dbeeb1e471a12246 225 SUPERFAMILY SSF52540 2 217 1.21E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06565 fa794fc922615aa4dbeeb1e471a12246 225 Pfam PF00005 ABC transporter 26 161 2.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_06565 fa794fc922615aa4dbeeb1e471a12246 225 Gene3D G3DSA:3.40.50.300 1 223 3.7E-58 T 11-10-2018 APT56_06565 fa794fc922615aa4dbeeb1e471a12246 225 SMART SM00382 26 206 1.9E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_06565 fa794fc922615aa4dbeeb1e471a12246 225 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_18620 4088a4ee6b79e214f19271be4a9d5456 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 327 5.7E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18620 4088a4ee6b79e214f19271be4a9d5456 331 PIRSF PIRSF017082 1 330 3.8E-73 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18620 4088a4ee6b79e214f19271be4a9d5456 331 Gene3D G3DSA:3.40.190.10 133 256 1.5E-101 T 11-10-2018 APT56_18620 4088a4ee6b79e214f19271be4a9d5456 331 Gene3D G3DSA:3.40.190.150 37 321 1.5E-101 T 11-10-2018 APT56_18620 4088a4ee6b79e214f19271be4a9d5456 331 SUPERFAMILY SSF53850 118 294 6.08E-11 T 11-10-2018 APT56_03505 38dd6d91cd2dc0d11375d1db9631b044 369 Gene3D G3DSA:3.30.420.40 12 364 2.7E-117 T 11-10-2018 APT56_03505 38dd6d91cd2dc0d11375d1db9631b044 369 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 6 369 1.1E-139 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 APT56_03505 38dd6d91cd2dc0d11375d1db9631b044 369 Gene3D G3DSA:3.30.420.40 145 329 2.7E-117 T 11-10-2018 APT56_03505 38dd6d91cd2dc0d11375d1db9631b044 369 SUPERFAMILY SSF53067 7 340 2.04E-27 T 11-10-2018 APT56_03505 38dd6d91cd2dc0d11375d1db9631b044 369 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 5 369 41.052 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 APT56_22890 56847fc81bb2b2cd8eeacfff6661d8eb 182 Gene3D G3DSA:3.90.550.10 1 181 6.9E-45 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_22890 56847fc81bb2b2cd8eeacfff6661d8eb 182 SUPERFAMILY SSF53448 2 173 5.12E-26 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_22890 56847fc81bb2b2cd8eeacfff6661d8eb 182 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 1 174 1.0E-55 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 APT56_22890 56847fc81bb2b2cd8eeacfff6661d8eb 182 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 1 176 20.279 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 APT56_22890 56847fc81bb2b2cd8eeacfff6661d8eb 182 Pfam PF12804 MobA-like NTP transferase domain 3 144 3.0E-28 T 11-10-2018 IPR025877 MobA-like NTP transferase APT56_14295 73ea8e690f421e007acc0aa21545c452 278 SUPERFAMILY SSF52402 1 143 2.51E-13 T 11-10-2018 APT56_14295 73ea8e690f421e007acc0aa21545c452 278 PRINTS PR01438 Universal stress protein signature 152 170 7.2E-7 T 11-10-2018 IPR006015 Universal stress protein A APT56_14295 73ea8e690f421e007acc0aa21545c452 278 PRINTS PR01438 Universal stress protein signature 256 278 7.2E-7 T 11-10-2018 IPR006015 Universal stress protein A APT56_14295 73ea8e690f421e007acc0aa21545c452 278 PRINTS PR01438 Universal stress protein signature 238 250 7.2E-7 T 11-10-2018 IPR006015 Universal stress protein A APT56_14295 73ea8e690f421e007acc0aa21545c452 278 SUPERFAMILY SSF52402 153 275 2.26E-19 T 11-10-2018 APT56_14295 73ea8e690f421e007acc0aa21545c452 278 Pfam PF00582 Universal stress protein family 153 275 2.4E-11 T 11-10-2018 IPR006016 UspA APT56_14295 73ea8e690f421e007acc0aa21545c452 278 Pfam PF00582 Universal stress protein family 1 143 1.0E-7 T 11-10-2018 IPR006016 UspA APT56_14295 73ea8e690f421e007acc0aa21545c452 278 Gene3D G3DSA:3.40.50.12370 4 277 2.9E-31 T 11-10-2018 APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 248 277 2.0E-8 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 546 591 1.1E-6 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 SMART SM00382 351 543 1.9E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 SMART SM00382 41 246 1.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 SUPERFAMILY SSF52540 316 566 2.05E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 SUPERFAMILY SSF52540 12 268 2.11E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 Gene3D G3DSA:3.40.50.300 313 601 4.2E-86 T 11-10-2018 APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 Gene3D G3DSA:3.40.50.300 10 308 3.3E-86 T 11-10-2018 APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 Pfam PF00005 ABC transporter 343 493 9.1E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_18700 0959b9c9872bcb501511be5ea3eab255 617 Pfam PF00005 ABC transporter 33 196 7.6E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19700 0072d3f25bfaa60afa8d97667ca29552 332 Gene3D G3DSA:3.30.1330.60 193 332 1.5E-35 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_19700 0072d3f25bfaa60afa8d97667ca29552 332 Pfam PF00691 OmpA family 229 325 4.7E-21 T 11-10-2018 IPR006665 OmpA-like domain APT56_19700 0072d3f25bfaa60afa8d97667ca29552 332 PRINTS PR01021 OMPA domain signature 275 291 1.8E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_19700 0072d3f25bfaa60afa8d97667ca29552 332 PRINTS PR01021 OMPA domain signature 230 252 1.8E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_19700 0072d3f25bfaa60afa8d97667ca29552 332 PRINTS PR01021 OMPA domain signature 260 275 1.8E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_19700 0072d3f25bfaa60afa8d97667ca29552 332 Pfam PF16234 Domain of unknown function (DUF4892) 39 132 5.6E-10 T 11-10-2018 IPR032608 Protein of unknown function DUF4892 APT56_19700 0072d3f25bfaa60afa8d97667ca29552 332 SUPERFAMILY SSF103088 225 330 3.79E-33 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_08220 24cbf2d00bd0155bdcfae400127fa357 553 Pfam PF00083 Sugar (and other) transporter 22 235 5.1E-28 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_08220 24cbf2d00bd0155bdcfae400127fa357 553 SUPERFAMILY SSF103473 13 548 6.89E-62 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_08220 24cbf2d00bd0155bdcfae400127fa357 553 ProSitePatterns PS00217 Sugar transport proteins signature 2. 130 155 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_08220 24cbf2d00bd0155bdcfae400127fa357 553 Gene3D G3DSA:1.20.1250.20 17 374 1.9E-56 T 11-10-2018 APT56_08220 24cbf2d00bd0155bdcfae400127fa357 553 Gene3D G3DSA:1.20.1250.20 433 552 1.7E-9 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 14 203 1.7E-41 T 11-10-2018 IPR003111 Lon, substrate-binding domain APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 688 696 - T 11-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 SUPERFAMILY SSF52540 316 597 7.32E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Gene3D G3DSA:3.30.230.10 597 784 7.0E-81 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 SUPERFAMILY SSF88697 13 204 1.86E-53 T 11-10-2018 IPR015947 PUA-like superfamily APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Hamap MF_01973 Lon protease [lon]. 14 784 70.437 T 11-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 TIGRFAM TIGR00763 lon: endopeptidase La 15 783 1.6E-301 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 PIRSF PIRSF001174 2 787 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Gene3D G3DSA:1.10.8.60 493 596 3.3E-30 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 354 491 7.5E-18 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 SMART SM00382 350 494 2.5E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 685 704 3.5E-56 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 738 756 3.5E-56 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 715 734 3.5E-56 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 358 377 3.5E-56 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 607 623 3.5E-56 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Gene3D G3DSA:2.30.130.40 3 121 1.8E-36 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 582 784 4.6E-95 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 SUPERFAMILY SSF54211 607 782 6.83E-57 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Gene3D G3DSA:3.40.50.300 316 492 2.7E-63 T 11-10-2018 APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 SMART SM00464 13 205 7.5E-76 T 11-10-2018 IPR003111 Lon, substrate-binding domain APT56_17720 a4299d3350ff12e50033e9384bd83e2a 816 Gene3D G3DSA:1.20.58.1480 124 248 7.8E-43 T 11-10-2018 APT56_12250 d29a6a60951d1b226313d5c03a30dcbc 238 PIRSF PIRSF005650 1 238 1.3E-91 T 11-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 APT56_12250 d29a6a60951d1b226313d5c03a30dcbc 238 Pfam PF00696 Amino acid kinase family 7 216 4.2E-28 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APT56_12250 d29a6a60951d1b226313d5c03a30dcbc 238 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 44.241 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 APT56_12250 d29a6a60951d1b226313d5c03a30dcbc 238 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 5.3E-100 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 APT56_12250 d29a6a60951d1b226313d5c03a30dcbc 238 SUPERFAMILY SSF53633 5 237 9.69E-70 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_12250 d29a6a60951d1b226313d5c03a30dcbc 238 Gene3D G3DSA:3.40.1160.10 1 238 1.7E-76 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_22555 856e4dbaca44b80d2a62d1806542c5d8 213 Gene3D G3DSA:1.20.1050.10 91 197 3.1E-71 T 11-10-2018 APT56_22555 856e4dbaca44b80d2a62d1806542c5d8 213 SUPERFAMILY SSF47616 92 206 1.16E-9 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_22555 856e4dbaca44b80d2a62d1806542c5d8 213 Gene3D G3DSA:3.40.30.10 9 205 3.1E-71 T 11-10-2018 APT56_22555 856e4dbaca44b80d2a62d1806542c5d8 213 SUPERFAMILY SSF52833 12 94 2.33E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_22555 856e4dbaca44b80d2a62d1806542c5d8 213 Pfam PF13417 Glutathione S-transferase, N-terminal domain 16 87 3.0E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_22555 856e4dbaca44b80d2a62d1806542c5d8 213 Pfam PF14834 Glutathione S-transferase, C-terminal domain 99 206 2.8E-34 T 11-10-2018 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|KEGG: 00983+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 36 358 3.0E-110 T 11-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 Pfam PF08402 TOBE domain 282 359 2.6E-6 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 Gene3D G3DSA:2.40.50.140 289 340 4.9E-9 T 11-10-2018 APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 Pfam PF00005 ABC transporter 24 163 2.8E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 Gene3D G3DSA:2.40.50.940 225 288 4.9E-9 T 11-10-2018 APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 Gene3D G3DSA:3.40.50.300 2 224 4.4E-66 T 11-10-2018 APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 SUPERFAMILY SSF50331 238 358 3.63E-13 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 SUPERFAMILY SSF52540 6 244 2.79E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25725 1eacd6318d1ce6379692cc1534d93f14 362 SMART SM00382 30 213 1.8E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09795 4b741a341a81b6802b5831a0836075de 376 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 373 33.043 T 11-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APT56_09795 4b741a341a81b6802b5831a0836075de 376 SUPERFAMILY SSF55347 135 360 1.1E-70 T 11-10-2018 APT56_09795 4b741a341a81b6802b5831a0836075de 376 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 145 359 1.4E-53 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_09795 4b741a341a81b6802b5831a0836075de 376 SMART SM00859 4 123 1.4E-25 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT56_09795 4b741a341a81b6802b5831a0836075de 376 Gene3D G3DSA:3.40.50.720 1 140 4.6E-57 T 11-10-2018 APT56_09795 4b741a341a81b6802b5831a0836075de 376 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 267 281 - T 11-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APT56_09795 4b741a341a81b6802b5831a0836075de 376 PIRSF PIRSF000148 3 376 3.0E-59 T 11-10-2018 APT56_09795 4b741a341a81b6802b5831a0836075de 376 SUPERFAMILY SSF51735 4 148 3.33E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_09795 4b741a341a81b6802b5831a0836075de 376 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 122 1.0E-21 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT56_09795 4b741a341a81b6802b5831a0836075de 376 Gene3D G3DSA:3.30.360.10 141 356 7.7E-79 T 11-10-2018 APT56_09795 4b741a341a81b6802b5831a0836075de 376 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 4 371 1.0E-181 T 11-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APT56_06865 01b48cc75dcc7cee19e38c1e9965922a 325 PIRSF PIRSF039012 4 318 1.1E-69 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 APT56_06865 01b48cc75dcc7cee19e38c1e9965922a 325 SUPERFAMILY SSF53187 10 313 1.12E-45 T 11-10-2018 APT56_06865 01b48cc75dcc7cee19e38c1e9965922a 325 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 34 313 1.5E-38 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 APT56_06865 01b48cc75dcc7cee19e38c1e9965922a 325 Gene3D G3DSA:3.40.630.10 4 318 1.6E-76 T 11-10-2018 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 Gene3D G3DSA:3.30.190.20 131 243 2.3E-243 T 11-10-2018 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 Gene3D G3DSA:1.20.1580.10 700 837 9.4E-141 T 11-10-2018 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 ProSitePatterns PS00211 ABC transporters family signature. 495 509 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 Gene3D G3DSA:3.40.50.300 622 943 9.4E-141 T 11-10-2018 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 ProSitePatterns PS00211 ABC transporters family signature. 837 851 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 Gene3D G3DSA:1.10.8.280 286 402 2.3E-243 T 11-10-2018 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 SUPERFAMILY SSF52540 5 577 7.1E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 Hamap MF_00205 UvrABC system protein A [uvrA]. 2 947 22.147 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 SUPERFAMILY SSF52540 622 928 8.54E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 932 0.0 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 Gene3D G3DSA:1.20.1580.10 91 500 2.3E-243 T 11-10-2018 APT56_27560 9898b5a7e3d9a99d777e8b1293ae18ac 953 Gene3D G3DSA:3.40.50.300 7 602 2.3E-243 T 11-10-2018 APT56_09085 ceba0c1f7c3b0a0f85c67e5aa17b1314 371 Gene3D G3DSA:3.40.50.2000 2 179 2.8E-24 T 11-10-2018 APT56_09085 ceba0c1f7c3b0a0f85c67e5aa17b1314 371 SUPERFAMILY SSF53756 3 369 1.05E-66 T 11-10-2018 APT56_09085 ceba0c1f7c3b0a0f85c67e5aa17b1314 371 Pfam PF13439 Glycosyltransferase Family 4 14 167 2.1E-22 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_09085 ceba0c1f7c3b0a0f85c67e5aa17b1314 371 Gene3D G3DSA:3.40.50.2000 180 349 1.4E-32 T 11-10-2018 APT56_09085 ceba0c1f7c3b0a0f85c67e5aa17b1314 371 Pfam PF00534 Glycosyl transferases group 1 191 345 3.6E-22 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 Pfam PF00989 PAS fold 13 122 6.8E-9 T 11-10-2018 IPR013767 PAS fold GO:0006355 APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 SUPERFAMILY SSF55785 19 132 2.27E-21 T 11-10-2018 IPR035965 PAS domain superfamily APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 Gene3D G3DSA:3.30.450.20 8 127 9.2E-26 T 11-10-2018 APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 Gene3D G3DSA:3.30.565.10 217 354 6.1E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 261 352 8.6E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 SUPERFAMILY SSF55874 220 351 9.95E-18 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 132 1.4E-14 T 11-10-2018 IPR000014 PAS domain APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 Pfam PF07730 Histidine kinase 153 218 8.3E-14 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 SMART SM00091 8 74 1.1E-5 T 11-10-2018 IPR000014 PAS domain APT56_13810 5c62d66e267560f1f6aeddd2c196158e 362 SMART SM00387 258 354 7.4E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_03520 4f3e36761466804e659a85005c785e92 218 Pfam PF01161 Phosphatidylethanolamine-binding protein 31 201 3.8E-40 T 11-10-2018 IPR008914 Phosphatidylethanolamine-binding protein APT56_03520 4f3e36761466804e659a85005c785e92 218 Gene3D G3DSA:3.90.280.10 1 202 1.5E-49 T 11-10-2018 IPR036610 PEBP-like superfamily APT56_03520 4f3e36761466804e659a85005c785e92 218 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 80 201 7.6E-19 T 11-10-2018 IPR005247 YbhB/YbcL APT56_03520 4f3e36761466804e659a85005c785e92 218 SUPERFAMILY SSF49777 1 204 5.89E-43 T 11-10-2018 IPR036610 PEBP-like superfamily APT56_10530 8f985c3442bba760000a9c5e43b080ae 639 Pfam PF00326 Prolyl oligopeptidase family 427 638 8.0E-47 T 11-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 APT56_10530 8f985c3442bba760000a9c5e43b080ae 639 Gene3D G3DSA:2.120.10.30 31 217 2.3E-5 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_10530 8f985c3442bba760000a9c5e43b080ae 639 SUPERFAMILY SSF50993 103 367 4.97E-14 T 11-10-2018 APT56_10530 8f985c3442bba760000a9c5e43b080ae 639 SUPERFAMILY SSF53474 382 638 4.91E-72 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_10530 8f985c3442bba760000a9c5e43b080ae 639 Gene3D G3DSA:3.40.50.1820 335 639 2.0E-81 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 SMART SM00864 15 204 1.3E-101 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 SMART SM00865 206 324 1.3E-53 T 11-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 Gene3D G3DSA:3.40.50.1440 13 316 1.7E-108 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 SUPERFAMILY SSF52490 15 207 2.49E-61 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 325 1.2E-115 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 172 1.4E-34 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 11 379 34.557 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 Pfam PF12327 FtsZ family, C-terminal domain 221 315 2.9E-32 T 11-10-2018 IPR024757 Cell division protein FtsZ, C-terminal APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 SUPERFAMILY SSF55307 206 322 5.49E-40 T 11-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 PRINTS PR00423 Cell division protein FtsZ signature 97 117 7.3E-46 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 PRINTS PR00423 Cell division protein FtsZ signature 125 146 7.3E-46 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 PRINTS PR00423 Cell division protein FtsZ signature 211 232 7.3E-46 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT56_04365 f99d4307760d11cdc0d8819e94e065c6 394 PRINTS PR00423 Cell division protein FtsZ signature 188 210 7.3E-46 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APT56_24185 722594c988e779d13325ee59705e9d28 445 SUPERFAMILY SSF52172 1 183 4.41E-37 T 11-10-2018 IPR011006 CheY-like superfamily APT56_24185 722594c988e779d13325ee59705e9d28 445 Gene3D G3DSA:1.10.10.60 392 445 4.2E-15 T 11-10-2018 APT56_24185 722594c988e779d13325ee59705e9d28 445 Gene3D G3DSA:3.40.50.300 134 309 1.4E-64 T 11-10-2018 APT56_24185 722594c988e779d13325ee59705e9d28 445 Gene3D G3DSA:3.40.50.2300 1 125 3.2E-31 T 11-10-2018 APT56_24185 722594c988e779d13325ee59705e9d28 445 SUPERFAMILY SSF52540 139 377 4.18E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24185 722594c988e779d13325ee59705e9d28 445 SMART SM00382 159 302 1.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24185 722594c988e779d13325ee59705e9d28 445 Gene3D G3DSA:1.10.8.60 310 374 2.8E-21 T 11-10-2018 APT56_24185 722594c988e779d13325ee59705e9d28 445 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 445 9.6E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_24185 722594c988e779d13325ee59705e9d28 445 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 408 425 9.6E-12 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_24185 722594c988e779d13325ee59705e9d28 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 349 358 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site APT56_24185 722594c988e779d13325ee59705e9d28 445 SUPERFAMILY SSF46689 349 444 9.68E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_24185 722594c988e779d13325ee59705e9d28 445 Pfam PF00158 Sigma-54 interaction domain 140 305 4.1E-69 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT56_24185 722594c988e779d13325ee59705e9d28 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 APT56_24185 722594c988e779d13325ee59705e9d28 445 Pfam PF02954 Bacterial regulatory protein, Fis family 402 442 9.5E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_24185 722594c988e779d13325ee59705e9d28 445 Pfam PF00072 Response regulator receiver domain 4 112 1.5E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24185 722594c988e779d13325ee59705e9d28 445 SMART SM00448 2 112 1.6E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 Gene3D G3DSA:3.30.70.270 8 167 5.8E-64 T 11-10-2018 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 SUPERFAMILY SSF56672 3 237 1.16E-98 T 11-10-2018 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 Pfam PF00817 impB/mucB/samB family 11 157 1.6E-51 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 SUPERFAMILY SSF100879 243 342 1.84E-19 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 Gene3D G3DSA:3.30.1490.100 244 352 4.3E-18 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 Gene3D G3DSA:2.30.40.20 25 76 5.8E-64 T 11-10-2018 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 Pfam PF11798 IMS family HHH motif 169 200 3.8E-10 T 11-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 Hamap MF_01113 DNA polymerase IV [dinB]. 5 355 37.718 T 11-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 Gene3D G3DSA:1.10.150.20 169 232 3.7E-23 T 11-10-2018 APT56_10545 dcec5a0bc0085bb57216dfa913644c6a 360 Pfam PF11799 impB/mucB/samB family C-terminal domain 237 350 1.8E-17 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT56_01870 c6c8f2045dd33b06c7f16286178ca5c2 409 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 250 383 2.3E-16 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain APT56_01870 c6c8f2045dd33b06c7f16286178ca5c2 409 Gene3D G3DSA:2.40.110.10 134 231 1.1E-24 T 11-10-2018 APT56_01870 c6c8f2045dd33b06c7f16286178ca5c2 409 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 31 128 1.6E-12 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_01870 c6c8f2045dd33b06c7f16286178ca5c2 409 PIRSF PIRSF016578 6 405 1.1E-25 T 11-10-2018 APT56_01870 c6c8f2045dd33b06c7f16286178ca5c2 409 SUPERFAMILY SSF56645 31 231 1.15E-39 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_01870 c6c8f2045dd33b06c7f16286178ca5c2 409 SUPERFAMILY SSF47203 245 400 1.43E-20 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_01870 c6c8f2045dd33b06c7f16286178ca5c2 409 Gene3D G3DSA:1.10.540.10 26 133 5.0E-26 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_01870 c6c8f2045dd33b06c7f16286178ca5c2 409 Gene3D G3DSA:1.20.140.10 233 409 1.4E-56 T 11-10-2018 APT56_17290 96dd94dc3e6013d1dd13da7595d8da0a 183 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 41 172 1.8E-32 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 443 9.1E-170 T 11-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 SMART SM00382 103 283 7.0E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 453 33.365 T 11-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 Gene3D G3DSA:1.20.120.140 4 319 1.1E-119 T 11-10-2018 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 Pfam PF00448 SRP54-type protein, GTPase domain 104 308 7.9E-68 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 SMART SM00963 1 86 8.6E-33 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 Pfam PF02978 Signal peptide binding domain 341 441 2.3E-31 T 11-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 SMART SM00962 104 309 4.1E-112 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 Gene3D G3DSA:3.40.50.300 95 298 1.1E-119 T 11-10-2018 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 282 295 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 SUPERFAMILY SSF47446 311 445 9.03E-44 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 Gene3D G3DSA:1.10.260.30 341 466 3.8E-41 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 SUPERFAMILY SSF52540 42 370 3.23E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25240 6e44f0c02b0aa9dcb450824b079cea03 468 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.4E-19 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_23695 5d892d7c4f5aad8ad751b07e130d2026 440 Gene3D G3DSA:3.90.1530.10 168 263 2.7E-10 T 11-10-2018 APT56_23695 5d892d7c4f5aad8ad751b07e130d2026 440 Pfam PF08857 Putative ParB-like nuclease 80 306 2.9E-51 T 11-10-2018 IPR014956 Putative ParB-like nuclease APT56_23695 5d892d7c4f5aad8ad751b07e130d2026 440 SUPERFAMILY SSF110849 75 314 4.29E-47 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily APT56_06555 c4af5b6c7668c5c3ebdec90e37cb21a8 188 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 2 179 18.256 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 APT56_06555 c4af5b6c7668c5c3ebdec90e37cb21a8 188 Pfam PF04279 Intracellular septation protein A 3 178 9.8E-64 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 APT56_06555 c4af5b6c7668c5c3ebdec90e37cb21a8 188 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 3 179 1.9E-52 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 APT56_05080 f369ec744505d0e780cce9edc3b03247 382 SUPERFAMILY SSF53822 25 381 2.77E-72 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_05080 f369ec744505d0e780cce9edc3b03247 382 Gene3D G3DSA:3.40.50.2300 142 371 8.6E-109 T 11-10-2018 APT56_05080 f369ec744505d0e780cce9edc3b03247 382 Gene3D G3DSA:3.40.50.2300 27 364 8.6E-109 T 11-10-2018 APT56_05080 f369ec744505d0e780cce9edc3b03247 382 Pfam PF13458 Periplasmic binding protein 24 362 1.0E-50 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_10805 86e1c2f8a06dd3ecbfcd839386cf6648 244 Gene3D G3DSA:3.40.630.30 16 238 3.5E-63 T 11-10-2018 APT56_10805 86e1c2f8a06dd3ecbfcd839386cf6648 244 Pfam PF13302 Acetyltransferase (GNAT) domain 37 178 3.1E-15 T 11-10-2018 IPR000182 GNAT domain APT56_10805 86e1c2f8a06dd3ecbfcd839386cf6648 244 SUPERFAMILY SSF55729 29 202 7.44E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_00845 78d7aaa6772307ddaa30308cf9fbf488 323 Gene3D G3DSA:3.40.190.150 28 312 3.2E-91 T 11-10-2018 APT56_00845 78d7aaa6772307ddaa30308cf9fbf488 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 319 3.4E-68 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00845 78d7aaa6772307ddaa30308cf9fbf488 323 Gene3D G3DSA:3.40.190.10 125 248 3.2E-91 T 11-10-2018 APT56_00845 78d7aaa6772307ddaa30308cf9fbf488 323 SUPERFAMILY SSF53850 110 287 5.43E-9 T 11-10-2018 APT56_00845 78d7aaa6772307ddaa30308cf9fbf488 323 PIRSF PIRSF017082 1 323 5.4E-73 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_01555 a0b83eaf79cf95579b835612c2743524 315 Pfam PF03466 LysR substrate binding domain 99 304 5.9E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_01555 a0b83eaf79cf95579b835612c2743524 315 SUPERFAMILY SSF53850 100 305 3.26E-40 T 11-10-2018 APT56_01555 a0b83eaf79cf95579b835612c2743524 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 1.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01555 a0b83eaf79cf95579b835612c2743524 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 1.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01555 a0b83eaf79cf95579b835612c2743524 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 1.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01555 a0b83eaf79cf95579b835612c2743524 315 Gene3D G3DSA:1.10.10.10 15 99 4.7E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01555 a0b83eaf79cf95579b835612c2743524 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 74 5.3E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01555 a0b83eaf79cf95579b835612c2743524 315 SUPERFAMILY SSF46785 17 123 1.01E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01555 a0b83eaf79cf95579b835612c2743524 315 Gene3D G3DSA:3.40.190.290 102 303 3.5E-54 T 11-10-2018 APT56_06225 aacf1371c293752960b77720b02a2e09 718 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 59 716 3.1E-93 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_06225 aacf1371c293752960b77720b02a2e09 718 Pfam PF00593 TonB dependent receptor 260 715 2.5E-58 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_06225 aacf1371c293752960b77720b02a2e09 718 Gene3D G3DSA:2.40.170.20 183 718 2.1E-113 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_06225 aacf1371c293752960b77720b02a2e09 718 Gene3D G3DSA:2.170.130.10 55 179 2.5E-28 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_06225 aacf1371c293752960b77720b02a2e09 718 SUPERFAMILY SSF56935 41 716 1.31E-108 T 11-10-2018 APT56_06225 aacf1371c293752960b77720b02a2e09 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 170 1.9E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 59 70 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 585 51.826 T 11-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 Gene3D G3DSA:3.90.800.10 130 238 1.6E-97 T 11-10-2018 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 PRINTS PR00987 Glutamyl-tRNA synthetase signature 70 81 8.2E-10 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 PRINTS PR00987 Glutamyl-tRNA synthetase signature 239 249 8.2E-10 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 PRINTS PR00987 Glutamyl-tRNA synthetase signature 85 98 8.2E-10 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 PRINTS PR00987 Glutamyl-tRNA synthetase signature 56 68 8.2E-10 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 374 564 1.3E-49 T 11-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 Gene3D G3DSA:2.40.240.10 374 582 3.4E-70 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 SUPERFAMILY SSF52374 52 379 6.97E-96 T 11-10-2018 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 52 371 6.3E-101 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 53 586 5.9E-205 T 11-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 Gene3D G3DSA:2.40.240.10 382 501 3.4E-70 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 Gene3D G3DSA:3.40.50.620 54 277 1.6E-97 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 Gene3D G3DSA:1.10.1160.10 295 372 4.1E-30 T 11-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 APT56_05240 adef7cd50d4e73c8ee25b4e6032d7522 588 SUPERFAMILY SSF50715 374 584 7.32E-66 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_21105 7246cee639112f543ddd5643e7b1a9b4 220 Pfam PF13500 AAA domain 8 196 2.0E-52 T 11-10-2018 APT56_21105 7246cee639112f543ddd5643e7b1a9b4 220 Gene3D G3DSA:3.40.50.300 7 204 5.4E-49 T 11-10-2018 APT56_21105 7246cee639112f543ddd5643e7b1a9b4 220 SUPERFAMILY SSF52540 8 200 4.38E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21105 7246cee639112f543ddd5643e7b1a9b4 220 PIRSF PIRSF006755 5 212 2.6E-43 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APT56_21105 7246cee639112f543ddd5643e7b1a9b4 220 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 6 200 25.957 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APT56_21105 7246cee639112f543ddd5643e7b1a9b4 220 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 10 164 1.6E-40 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APT56_07875 55e210b8f01d19740f6e4602e3c94d87 335 Gene3D G3DSA:3.40.50.300 6 203 3.2E-52 T 11-10-2018 APT56_07875 55e210b8f01d19740f6e4602e3c94d87 335 SUPERFAMILY SSF90002 236 325 2.35E-15 T 11-10-2018 APT56_07875 55e210b8f01d19740f6e4602e3c94d87 335 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 11 188 2.2E-41 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT56_07875 55e210b8f01d19740f6e4602e3c94d87 335 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 237 325 1.3E-11 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT56_07875 55e210b8f01d19740f6e4602e3c94d87 335 Gene3D G3DSA:3.30.1220.10 223 328 1.1E-11 T 11-10-2018 IPR036627 CobW-like, C-terminal domain superfamily APT56_07875 55e210b8f01d19740f6e4602e3c94d87 335 SUPERFAMILY SSF52540 7 188 1.18E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07875 55e210b8f01d19740f6e4602e3c94d87 335 SMART SM00833 236 330 2.0E-15 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT56_20355 7cdd9698c7db3d994de50af2c4f5f7e3 273 Gene3D G3DSA:3.40.50.300 25 253 3.7E-60 T 11-10-2018 APT56_20355 7cdd9698c7db3d994de50af2c4f5f7e3 273 SMART SM00382 51 232 6.4E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_20355 7cdd9698c7db3d994de50af2c4f5f7e3 273 SUPERFAMILY SSF52540 27 251 5.09E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_20355 7cdd9698c7db3d994de50af2c4f5f7e3 273 Pfam PF00005 ABC transporter 43 181 5.1E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 SMART SM00357 96 154 6.5E-12 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 SMART SM00316 668 751 9.2E-13 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 SUPERFAMILY SSF50249 670 750 1.14E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 TIGRFAM TIGR02063 RNase_R: ribonuclease R 29 751 2.2E-245 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 Pfam PF00773 RNB domain 269 608 1.8E-100 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 SUPERFAMILY SSF50249 77 156 6.49E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 90 751 4.4E-205 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 Hamap MF_01895 Ribonuclease R [rnr]. 48 751 54.319 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 SUPERFAMILY SSF50249 147 246 6.0E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 SMART SM00955 269 609 4.4E-178 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 Gene3D G3DSA:2.40.50.140 87 157 5.3E-17 T 11-10-2018 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 Pfam PF08206 Ribonuclease B OB domain 97 153 4.5E-19 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 SUPERFAMILY SSF50249 229 667 4.51E-133 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 ProSitePatterns PS01175 Ribonuclease II family signature. 576 600 - T 11-10-2018 IPR022966 Ribonuclease II/R, conserved site APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 Gene3D G3DSA:2.40.50.140 671 782 1.6E-20 T 11-10-2018 APT56_08750 7f2c0c48cd3b881104c9697c5446209d 821 Pfam PF00575 S1 RNA binding domain 668 748 2.3E-10 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_17235 312378f6cfc3356f39e10d7b40c7144e 490 SUPERFAMILY SSF53187 25 485 1.53E-44 T 11-10-2018 APT56_17235 312378f6cfc3356f39e10d7b40c7144e 490 Gene3D G3DSA:3.40.630.10 359 490 4.6E-22 T 11-10-2018 APT56_17235 312378f6cfc3356f39e10d7b40c7144e 490 Gene3D G3DSA:3.40.630.10 13 245 8.5E-53 T 11-10-2018 APT56_17235 312378f6cfc3356f39e10d7b40c7144e 490 Pfam PF01546 Peptidase family M20/M25/M40 107 484 2.7E-22 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_17235 312378f6cfc3356f39e10d7b40c7144e 490 Pfam PF07687 Peptidase dimerisation domain 219 383 1.1E-13 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_08810 e49b6078406f4990b150d52df47dd031 275 SUPERFAMILY SSF53098 112 268 6.07E-37 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_08810 e49b6078406f4990b150d52df47dd031 275 Gene3D G3DSA:3.30.420.10 111 260 1.8E-15 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_08810 e49b6078406f4990b150d52df47dd031 275 Pfam PF00665 Integrase core domain 115 229 2.8E-25 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APT56_27595 e49b6078406f4990b150d52df47dd031 275 SUPERFAMILY SSF53098 112 268 6.07E-37 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_27595 e49b6078406f4990b150d52df47dd031 275 Gene3D G3DSA:3.30.420.10 111 260 1.8E-15 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_27595 e49b6078406f4990b150d52df47dd031 275 Pfam PF00665 Integrase core domain 115 229 2.8E-25 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APT56_02585 e49b6078406f4990b150d52df47dd031 275 SUPERFAMILY SSF53098 112 268 6.07E-37 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_02585 e49b6078406f4990b150d52df47dd031 275 Gene3D G3DSA:3.30.420.10 111 260 1.8E-15 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_02585 e49b6078406f4990b150d52df47dd031 275 Pfam PF00665 Integrase core domain 115 229 2.8E-25 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APT56_17640 c02732e5aeac717486810d522db73752 273 SMART SM00382 34 235 1.7E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17640 c02732e5aeac717486810d522db73752 273 Gene3D G3DSA:3.40.50.300 1 262 3.5E-62 T 11-10-2018 APT56_17640 c02732e5aeac717486810d522db73752 273 Pfam PF00005 ABC transporter 26 187 6.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17640 c02732e5aeac717486810d522db73752 273 SUPERFAMILY SSF52540 8 258 8.66E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17640 c02732e5aeac717486810d522db73752 273 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 236 258 6.8E-12 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_06310 3580bd88dd61383334e808c8a29f8e81 489 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 468 9.4E-95 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_06310 3580bd88dd61383334e808c8a29f8e81 489 SUPERFAMILY SSF56954 8 471 9.81E-103 T 11-10-2018 APT56_06310 3580bd88dd61383334e808c8a29f8e81 489 Pfam PF02321 Outer membrane efflux protein 287 466 7.1E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_06310 3580bd88dd61383334e808c8a29f8e81 489 Pfam PF02321 Outer membrane efflux protein 68 257 2.4E-26 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_06310 3580bd88dd61383334e808c8a29f8e81 489 Gene3D G3DSA:2.20.200.10 105 357 2.5E-129 T 11-10-2018 APT56_06310 3580bd88dd61383334e808c8a29f8e81 489 Gene3D G3DSA:1.20.1600.10 58 469 2.5E-129 T 11-10-2018 APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 Gene3D G3DSA:3.30.420.40 129 297 1.8E-122 T 11-10-2018 APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 339 61.547 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 7.6E-130 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 3.5E-48 T 11-10-2018 IPR017861 Kae1/TsaD family APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 3.5E-48 T 11-10-2018 IPR017861 Kae1/TsaD family APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 3.5E-48 T 11-10-2018 IPR017861 Kae1/TsaD family APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 3.5E-48 T 11-10-2018 IPR017861 Kae1/TsaD family APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 3.5E-48 T 11-10-2018 IPR017861 Kae1/TsaD family APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 3.5E-48 T 11-10-2018 IPR017861 Kae1/TsaD family APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 Pfam PF00814 Glycoprotease family 24 311 6.8E-97 T 11-10-2018 IPR000905 Gcp-like domain APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 Gene3D G3DSA:3.30.420.40 3 319 1.8E-122 T 11-10-2018 APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 SUPERFAMILY SSF53067 2 122 9.06E-27 T 11-10-2018 APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 SUPERFAMILY SSF53067 103 312 3.11E-44 T 11-10-2018 APT56_15185 e1025290ccc1feef0925d0a1307abc22 343 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 7.5E-111 T 11-10-2018 IPR017861 Kae1/TsaD family APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 168 1.2E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 234 254 1.2E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 27 44 1.2E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 215 1.2E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 105 116 1.2E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 196 1.2E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 SUPERFAMILY SSF51735 24 270 1.24E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 35 270 7.7E-49 T 11-10-2018 APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 26 171 0.0011 T 11-10-2018 APT56_10840 3f63e2e1d99e4c4dcac7f4da5d14b5f9 303 Gene3D G3DSA:3.40.50.720 10 284 1.5E-75 T 11-10-2018 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 338 352 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 Gene3D G3DSA:3.90.640.10 230 317 1.1E-166 T 11-10-2018 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 604 3.6E-291 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 SUPERFAMILY SSF100920 385 541 4.05E-61 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 470 486 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 199 209 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 335 351 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 366 386 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 PRINTS PR00301 70kDa heat shock protein signature 389 408 1.4E-80 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 Pfam PF00012 Hsp70 protein 4 604 1.7E-266 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 193 206 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 Gene3D G3DSA:3.30.420.40 5 380 1.1E-166 T 11-10-2018 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 SUPERFAMILY SSF53067 188 383 1.23E-68 T 11-10-2018 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 637 37.088 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 Gene3D G3DSA:1.20.1270.10 525 608 9.3E-26 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 SUPERFAMILY SSF53067 4 184 5.34E-66 T 11-10-2018 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 SUPERFAMILY SSF100934 508 610 3.34E-20 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 Gene3D G3DSA:3.30.420.40 180 367 1.1E-166 T 11-10-2018 APT56_05595 83a0aa337236166dfa2000e19a0edbea 641 Gene3D G3DSA:2.60.34.10 384 524 9.5E-67 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 APT56_23090 9bbb6bf3aaa800003abb6bd423b84419 375 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 48 362 1.4E-136 T 11-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC APT56_23090 9bbb6bf3aaa800003abb6bd423b84419 375 Pfam PF02653 Branched-chain amino acid transport system / permease component 56 351 4.0E-38 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_11450 2495fe96d7caaeff622c33a7b6381fa7 82 Gene3D G3DSA:1.10.1200.10 7 81 2.2E-10 T 11-10-2018 IPR036736 ACP-like superfamily APT56_11450 2495fe96d7caaeff622c33a7b6381fa7 82 SUPERFAMILY SSF47336 7 81 5.33E-7 T 11-10-2018 IPR036736 ACP-like superfamily APT56_22395 1107991bba9cf551b85f6151c8901dce 258 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 4 256 8.2E-112 T 11-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK APT56_22395 1107991bba9cf551b85f6151c8901dce 258 SUPERFAMILY SSF52540 4 254 2.62E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22395 1107991bba9cf551b85f6151c8901dce 258 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_22395 1107991bba9cf551b85f6151c8901dce 258 SMART SM00382 31 229 3.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22395 1107991bba9cf551b85f6151c8901dce 258 Pfam PF00005 ABC transporter 23 180 6.1E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_22395 1107991bba9cf551b85f6151c8901dce 258 Gene3D G3DSA:3.40.50.300 5 258 2.7E-63 T 11-10-2018 APT56_22395 1107991bba9cf551b85f6151c8901dce 258 PIRSF PIRSF037116 1 258 4.7E-134 T 11-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK APT56_26880 46b6de0646276a3605a0ec20fcf68c0f 658 Gene3D G3DSA:3.40.50.12780 6 347 1.5E-52 T 11-10-2018 APT56_26880 46b6de0646276a3605a0ec20fcf68c0f 658 Gene3D G3DSA:3.40.50.12780 348 477 4.4E-34 T 11-10-2018 APT56_26880 46b6de0646276a3605a0ec20fcf68c0f 658 SUPERFAMILY SSF56801 11 614 4.58E-112 T 11-10-2018 APT56_26880 46b6de0646276a3605a0ec20fcf68c0f 658 Pfam PF00501 AMP-binding enzyme 25 482 1.8E-92 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_26880 46b6de0646276a3605a0ec20fcf68c0f 658 ProSitePatterns PS00455 Putative AMP-binding domain signature. 197 208 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_04475 379f40447c73fe9c66350fc8a2987aee 741 Pfam PF01055 Glycosyl hydrolases family 31 228 663 3.0E-76 T 11-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 APT56_04475 379f40447c73fe9c66350fc8a2987aee 741 Gene3D G3DSA:2.60.40.1760 14 232 3.7E-20 T 11-10-2018 APT56_04475 379f40447c73fe9c66350fc8a2987aee 741 Gene3D G3DSA:3.20.20.80 233 609 3.6E-76 T 11-10-2018 APT56_04475 379f40447c73fe9c66350fc8a2987aee 741 SUPERFAMILY SSF51445 236 577 2.57E-40 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_04475 379f40447c73fe9c66350fc8a2987aee 741 Gene3D G3DSA:2.60.40.1180 610 658 1.3E-10 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APT56_04475 379f40447c73fe9c66350fc8a2987aee 741 SUPERFAMILY SSF74650 14 233 3.77E-27 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 APT56_04475 379f40447c73fe9c66350fc8a2987aee 741 SUPERFAMILY SSF51011 579 658 2.45E-20 T 11-10-2018 APT56_24565 0af3d77fb1795a288e0732963ef224a1 631 Gene3D G3DSA:3.30.1120.80 547 628 3.6E-130 T 11-10-2018 APT56_24565 0af3d77fb1795a288e0732963ef224a1 631 Gene3D G3DSA:3.40.720.10 266 545 3.6E-130 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_24565 0af3d77fb1795a288e0732963ef224a1 631 SUPERFAMILY SSF53649 269 580 4.19E-63 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APT56_24565 0af3d77fb1795a288e0732963ef224a1 631 PIRSF PIRSF005091 33 620 1.8E-86 T 11-10-2018 IPR012160 Lipoteichoic acid synthase-like APT56_24565 0af3d77fb1795a288e0732963ef224a1 631 Pfam PF00884 Sulfatase 272 537 7.0E-39 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 APT56_02335 0ffdc35063300842a63c7ad0d93537a7 409 Gene3D G3DSA:3.30.1540.10 246 337 9.5E-148 T 11-10-2018 APT56_02335 0ffdc35063300842a63c7ad0d93537a7 409 Gene3D G3DSA:3.40.50.10540 7 404 9.5E-148 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_02335 0ffdc35063300842a63c7ad0d93537a7 409 SUPERFAMILY SSF89796 4 407 2.75E-144 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_02335 0ffdc35063300842a63c7ad0d93537a7 409 Pfam PF02515 CoA-transferase family III 8 386 2.5E-133 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_24155 a8037dd42d98e5b041184119a881d86a 326 Pfam PF12833 Helix-turn-helix domain 244 322 3.3E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_24155 a8037dd42d98e5b041184119a881d86a 326 SUPERFAMILY SSF52317 14 205 2.14E-43 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_24155 a8037dd42d98e5b041184119a881d86a 326 Gene3D G3DSA:1.10.10.60 219 325 1.6E-23 T 11-10-2018 APT56_24155 a8037dd42d98e5b041184119a881d86a 326 Pfam PF01965 DJ-1/PfpI family 14 186 6.9E-21 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_24155 a8037dd42d98e5b041184119a881d86a 326 Gene3D G3DSA:3.40.50.880 10 214 4.0E-58 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_24155 a8037dd42d98e5b041184119a881d86a 326 SUPERFAMILY SSF46689 280 322 2.28E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_24155 a8037dd42d98e5b041184119a881d86a 326 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 275 316 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_24155 a8037dd42d98e5b041184119a881d86a 326 SUPERFAMILY SSF46689 226 271 2.19E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_24155 a8037dd42d98e5b041184119a881d86a 326 SMART SM00342 238 320 3.0E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 Gene3D G3DSA:1.10.10.10 139 212 5.6E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20620 cf0ceb32412349a1289518c61fca6197 214 Pfam PF00072 Response regulator receiver domain 4 119 7.6E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 205 5.2E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 5.1E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 5.1E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 5.1E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 SUPERFAMILY SSF52172 1 130 6.69E-24 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20620 cf0ceb32412349a1289518c61fca6197 214 Gene3D G3DSA:3.40.50.2300 1 137 3.0E-25 T 11-10-2018 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 SMART SM00448 2 119 9.9E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 SMART SM00421 150 207 2.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_20620 cf0ceb32412349a1289518c61fca6197 214 SUPERFAMILY SSF46894 143 213 1.53E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_03180 513440051f70c02cfb8d6fad9efe6f23 246 SUPERFAMILY SSF69593 6 177 2.22E-29 T 11-10-2018 APT56_03180 513440051f70c02cfb8d6fad9efe6f23 246 SMART SM00563 67 179 4.9E-32 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APT56_03180 513440051f70c02cfb8d6fad9efe6f23 246 Pfam PF01553 Acyltransferase 63 176 1.7E-21 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Gene3D G3DSA:3.30.70.1430 568 670 0.0 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 SUPERFAMILY SSF82693 38 131 3.49E-27 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 SUPERFAMILY SSF82714 724 811 5.36E-23 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Gene3D G3DSA:1.20.1640.10 514 1024 0.0 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 SUPERFAMILY SSF82866 296 497 4.19E-50 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 SUPERFAMILY SSF82693 566 671 4.03E-27 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1038 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Gene3D G3DSA:3.30.70.1440 671 867 0.0 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 SUPERFAMILY SSF82866 834 1029 7.72E-47 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 SUPERFAMILY SSF82693 135 330 3.49E-26 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Gene3D G3DSA:3.30.70.1430 38 819 0.0 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 SUPERFAMILY SSF82714 182 271 7.98E-22 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Gene3D G3DSA:1.20.1640.10 8 513 0.0 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 SUPERFAMILY SSF82693 674 858 2.88E-29 T 11-10-2018 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 Gene3D G3DSA:3.30.2090.10 723 811 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_11790 0ca8b4c27ed58e531e3ea73621fbc48a 1060 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 7.5E-111 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 SUPERFAMILY SSF52210 127 271 2.62E-31 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 Pfam PF13549 ATP-grasp domain 499 612 1.3E-22 T 11-10-2018 APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 Gene3D G3DSA:3.30.470.20 454 612 1.4E-22 T 11-10-2018 APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 Gene3D G3DSA:3.40.50.261 275 439 7.9E-32 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 SUPERFAMILY SSF52210 277 435 5.23E-27 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 146 271 7.1E-35 T 11-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 Pfam PF00583 Acetyltransferase (GNAT) family 722 794 2.5E-11 T 11-10-2018 IPR000182 GNAT domain APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 Gene3D G3DSA:3.40.630.30 643 810 1.2E-43 T 11-10-2018 APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 Gene3D G3DSA:3.40.50.261 125 274 2.3E-38 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_03410 c3d241bafeb597cd9a1883b1b7c6181c 813 SUPERFAMILY SSF55729 652 800 3.43E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_22285 eb8bed4a58406b4e1ba0edbfea213442 275 SMART SM00346 30 118 7.6E-18 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_22285 eb8bed4a58406b4e1ba0edbfea213442 275 SUPERFAMILY SSF55781 95 273 4.97E-50 T 11-10-2018 APT56_22285 eb8bed4a58406b4e1ba0edbfea213442 275 Pfam PF01614 Bacterial transcriptional regulator 150 269 6.5E-33 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_22285 eb8bed4a58406b4e1ba0edbfea213442 275 Pfam PF09339 IclR helix-turn-helix domain 32 83 3.9E-11 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_22285 eb8bed4a58406b4e1ba0edbfea213442 275 SUPERFAMILY SSF46785 32 101 3.37E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22285 eb8bed4a58406b4e1ba0edbfea213442 275 Gene3D G3DSA:3.30.450.40 97 275 6.6E-57 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_22285 eb8bed4a58406b4e1ba0edbfea213442 275 Gene3D G3DSA:1.10.10.10 18 96 1.6E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24875 f49494c14ed9b421c626db7302943852 271 SUPERFAMILY SSF52172 18 122 1.85E-9 T 11-10-2018 IPR011006 CheY-like superfamily APT56_24875 f49494c14ed9b421c626db7302943852 271 SUPERFAMILY SSF46894 155 236 2.52E-11 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_24875 f49494c14ed9b421c626db7302943852 271 Gene3D G3DSA:3.40.50.2300 14 122 1.0E-6 T 11-10-2018 APT56_24875 f49494c14ed9b421c626db7302943852 271 Gene3D G3DSA:1.10.10.10 131 239 2.7E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24875 f49494c14ed9b421c626db7302943852 271 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 234 1.5E-7 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_24875 f49494c14ed9b421c626db7302943852 271 SMART SM00862 157 234 6.4E-9 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 Gene3D G3DSA:3.40.30.10 488 610 6.2E-28 T 11-10-2018 APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 ProSitePatterns PS00194 Thioredoxin family active site. 519 537 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 Pfam PF11412 Disulphide bond corrector protein DsbC 29 145 7.1E-32 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 200 400 2.1E-17 T 11-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 SUPERFAMILY SSF52833 503 608 1.17E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 Pfam PF13899 Thioredoxin-like 511 584 2.7E-9 T 11-10-2018 APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 SUPERFAMILY SSF74863 27 146 2.62E-32 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 611 34.342 T 11-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 APT56_27645 50958f9dd960084cfcc24b2cfe7b676c 613 Gene3D G3DSA:2.60.40.1250 22 156 4.7E-37 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily APT56_16930 2ccf58585342af7b35643bbb95997244 637 SUPERFAMILY SSF102114 340 531 3.53E-25 T 11-10-2018 APT56_16930 2ccf58585342af7b35643bbb95997244 637 Pfam PF04055 Radical SAM superfamily 366 527 2.9E-10 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_16930 2ccf58585342af7b35643bbb95997244 637 Gene3D G3DSA:3.80.30.20 361 541 8.0E-12 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APT56_16930 2ccf58585342af7b35643bbb95997244 637 SMART SM00729 363 576 1.0E-13 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 PIRSF PIRSF000193 2 268 4.7E-61 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 Gene3D G3DSA:1.10.3730.10 163 267 3.5E-30 T 11-10-2018 APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 Gene3D G3DSA:3.40.50.720 1 162 1.4E-42 T 11-10-2018 APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 SUPERFAMILY SSF48179 161 266 4.42E-27 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 97 5.5E-12 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 5 265 1.6E-68 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 161 265 3.8E-27 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 SUPERFAMILY SSF51735 4 158 2.77E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_25705 34fd82141ca04bff42a11672a1685ee8 268 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 3 265 23.766 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_06285 4712c957a21fa402baa9982ef34d263c 357 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 346 5.3E-63 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_06285 4712c957a21fa402baa9982ef34d263c 357 Gene3D G3DSA:2.40.30.170 38 269 1.4E-65 T 11-10-2018 APT56_06285 4712c957a21fa402baa9982ef34d263c 357 Gene3D G3DSA:2.40.420.20 270 344 1.4E-65 T 11-10-2018 APT56_06285 4712c957a21fa402baa9982ef34d263c 357 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 262 3.6E-22 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_06285 4712c957a21fa402baa9982ef34d263c 357 Gene3D G3DSA:2.40.50.100 47 193 1.4E-65 T 11-10-2018 APT56_06285 4712c957a21fa402baa9982ef34d263c 357 SUPERFAMILY SSF111369 38 264 4.05E-16 T 11-10-2018 APT56_06285 4712c957a21fa402baa9982ef34d263c 357 Gene3D G3DSA:1.10.287.470 81 154 1.4E-65 T 11-10-2018 APT56_25930 73e03c436677784646ad8344e8445341 948 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 584 596 - T 11-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 7 948 18.88 T 11-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 763 789 1.9E-53 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 409 429 1.9E-53 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 258 273 1.9E-53 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 144 157 1.9E-53 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 582 602 1.9E-53 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 624 653 1.9E-53 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 196 212 1.9E-53 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 145 156 - T 11-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_25930 73e03c436677784646ad8344e8445341 948 SUPERFAMILY SSF51621 15 948 8.32E-285 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_25930 73e03c436677784646ad8344e8445341 948 Pfam PF00311 Phosphoenolpyruvate carboxylase 141 948 3.2E-284 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APT56_09415 907dbe451eb8d2ef3f53346f674ba38f 122 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 118 5.3E-53 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 APT56_09415 907dbe451eb8d2ef3f53346f674ba38f 122 Pfam PF02261 Aspartate decarboxylase 1 114 1.4E-49 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 APT56_09415 907dbe451eb8d2ef3f53346f674ba38f 122 Gene3D G3DSA:2.40.40.20 1 122 1.0E-52 T 11-10-2018 APT56_09415 907dbe451eb8d2ef3f53346f674ba38f 122 PIRSF PIRSF006246 1 121 1.6E-51 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 APT56_09415 907dbe451eb8d2ef3f53346f674ba38f 122 SUPERFAMILY SSF50692 1 117 3.35E-48 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APT56_09415 907dbe451eb8d2ef3f53346f674ba38f 122 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 122 70.949 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 APT56_09415 907dbe451eb8d2ef3f53346f674ba38f 122 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 95 1.0E-46 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 APT56_05070 b4231a573b26fa8290c65e925a45a8c0 597 Pfam PF02653 Branched-chain amino acid transport system / permease component 26 306 3.2E-30 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_05070 b4231a573b26fa8290c65e925a45a8c0 597 Gene3D G3DSA:3.40.50.300 346 595 6.5E-56 T 11-10-2018 APT56_05070 b4231a573b26fa8290c65e925a45a8c0 597 SMART SM00382 374 572 5.5E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05070 b4231a573b26fa8290c65e925a45a8c0 597 Pfam PF00005 ABC transporter 367 523 2.3E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_05070 b4231a573b26fa8290c65e925a45a8c0 597 SUPERFAMILY SSF52540 348 593 2.21E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05070 b4231a573b26fa8290c65e925a45a8c0 597 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 572 594 7.1E-11 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_27490 ff3797219a0fa7dcea662a9feb0c3c3f 308 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 23 306 26.211 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 APT56_27490 ff3797219a0fa7dcea662a9feb0c3c3f 308 Pfam PF01040 UbiA prenyltransferase family 47 292 2.4E-53 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 APT56_27490 ff3797219a0fa7dcea662a9feb0c3c3f 308 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 85 107 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site APT56_27490 ff3797219a0fa7dcea662a9feb0c3c3f 308 Gene3D G3DSA:1.20.120.1780 190 307 1.8E-18 T 11-10-2018 APT56_27490 ff3797219a0fa7dcea662a9feb0c3c3f 308 Gene3D G3DSA:1.10.357.140 43 189 4.6E-40 T 11-10-2018 APT56_27490 ff3797219a0fa7dcea662a9feb0c3c3f 308 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 28 305 5.1E-94 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 Gene3D G3DSA:3.30.70.1660 75 303 3.1E-98 T 11-10-2018 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 Gene3D G3DSA:3.30.160.20 171 266 3.1E-98 T 11-10-2018 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 310 32.864 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 SUPERFAMILY SSF75620 3 307 4.19E-124 T 11-10-2018 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 308 2.0E-141 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 Gene3D G3DSA:1.20.58.410 1 61 8.5E-10 T 11-10-2018 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 Pfam PF03462 PCRF domain 2 165 6.6E-49 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 SMART SM00937 30 140 1.2E-54 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 190 206 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT56_17570 ed45ad8e3b297cfb24dcd938d3fab203 310 Pfam PF00472 RF-1 domain 174 282 1.5E-41 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 SUPERFAMILY SSF55781 68 332 1.41E-60 T 11-10-2018 APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 Gene3D G3DSA:1.10.10.10 1 81 3.9E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 Gene3D G3DSA:3.30.450.40 101 329 5.7E-37 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 2 329 1.7E-91 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 Gene3D G3DSA:3.30.390.60 122 220 5.7E-37 T 11-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 323 25.921 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 6 70 1.4E-7 T 11-10-2018 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 SUPERFAMILY SSF46785 1 79 6.96E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 Pfam PF01628 HrcA protein C terminal domain 100 316 2.5E-57 T 11-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 APT56_05570 fc734848d3726eb561b47783f4be6ff8 334 PIRSF PIRSF005485 1 334 3.3E-107 T 11-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Gene3D G3DSA:1.20.1640.10 8 513 0.0 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Gene3D G3DSA:3.30.70.1430 568 668 0.0 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 SUPERFAMILY SSF82693 135 329 1.52E-23 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Gene3D G3DSA:3.30.70.1440 669 865 0.0 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 SUPERFAMILY SSF82866 296 497 1.44E-48 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Gene3D G3DSA:3.30.70.1430 38 817 0.0 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 SUPERFAMILY SSF82866 831 1024 3.53E-44 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Pfam PF00873 AcrB/AcrD/AcrF family 1 1025 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1033 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 SUPERFAMILY SSF82714 182 272 6.93E-21 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 4.2E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 SUPERFAMILY SSF82693 566 669 1.59E-26 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Gene3D G3DSA:1.20.1640.10 514 1022 0.0 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 Gene3D G3DSA:3.30.2090.10 721 809 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 SUPERFAMILY SSF82693 672 856 1.33E-25 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 SUPERFAMILY SSF82693 38 128 1.1E-25 T 11-10-2018 APT56_21200 57f4cdb157b711645de591f8f3dec893 1073 SUPERFAMILY SSF82714 723 808 1.96E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_24055 8ccbc9d8e3214b5c7fb49c9042ac6c2d 421 Pfam PF01593 Flavin containing amine oxidoreductase 10 264 2.0E-21 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT56_24055 8ccbc9d8e3214b5c7fb49c9042ac6c2d 421 SUPERFAMILY SSF51905 1 410 2.56E-53 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_24055 8ccbc9d8e3214b5c7fb49c9042ac6c2d 421 Gene3D G3DSA:3.50.50.60 1 272 3.6E-25 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 SUPERFAMILY SSF116878 124 450 9.55E-48 T 11-10-2018 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 Pfam PF01926 50S ribosome-binding GTPase 222 335 1.3E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 450 1.3E-99 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 221 339 1.0E-19 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 123 4.2E-38 T 11-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 Gene3D G3DSA:3.40.50.300 220 377 1.1E-99 T 11-10-2018 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 Gene3D G3DSA:1.20.120.430 125 450 1.1E-99 T 11-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 SUPERFAMILY SSF52540 71 367 5.31E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 Pfam PF12631 MnmE helical domain 126 447 9.2E-55 T 11-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 450 32.661 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 APT56_00215 1ad6092a0a5e8889d07a81b28297410a 450 Gene3D G3DSA:3.30.1360.120 1 124 1.8E-42 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 SMART SM00448 10 124 8.8E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 SUPERFAMILY SSF52172 10 131 1.27E-28 T 11-10-2018 IPR011006 CheY-like superfamily APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 Gene3D G3DSA:3.40.50.2300 10 139 3.5E-29 T 11-10-2018 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 3.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 3.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 3.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 SUPERFAMILY SSF46894 140 209 2.99E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 1.2E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 SMART SM00421 147 204 1.4E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 Pfam PF00072 Response regulator receiver domain 12 125 1.2E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_25650 3fed6968f3ac1d519ed321e25d1452eb 212 Gene3D G3DSA:1.10.10.10 143 209 2.6E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 Pfam PF07729 FCD domain 100 221 8.3E-25 T 11-10-2018 IPR011711 GntR, C-terminal APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 64 6.2E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 80 6.2E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 SMART SM00345 32 90 6.1E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 SMART SM00895 100 222 1.4E-20 T 11-10-2018 IPR011711 GntR, C-terminal APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 Gene3D G3DSA:1.10.10.10 27 91 2.3E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 SUPERFAMILY SSF46785 27 94 9.1E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 Gene3D G3DSA:1.20.120.530 93 231 2.1E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 32 90 4.8E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_01770 adb108a9df62eebc2347e09f22cd6779 238 SUPERFAMILY SSF48008 99 228 3.66E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_22430 6b771c9fee1078892f9f015298ebcbf9 247 Pfam PF06299 Protein of unknown function (DUF1045) 60 220 8.6E-48 T 11-10-2018 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_02270 f8056bd8e7c535ea9a899bc88cf8d945 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 318 3.7E-37 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_02270 f8056bd8e7c535ea9a899bc88cf8d945 325 SUPERFAMILY SSF161098 90 304 1.46E-20 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02270 f8056bd8e7c535ea9a899bc88cf8d945 325 Gene3D G3DSA:1.10.3720.10 84 315 1.3E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 Gene3D G3DSA:1.25.40.80 133 287 2.8E-77 T 11-10-2018 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 Pfam PF00875 DNA photolyase 4 166 3.0E-43 T 11-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 Gene3D G3DSA:1.10.579.10 294 471 2.0E-72 T 11-10-2018 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 Pfam PF03441 FAD binding domain of DNA photolyase 276 466 2.5E-77 T 11-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 Gene3D G3DSA:3.40.50.620 4 203 2.8E-77 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 SUPERFAMILY SSF48173 196 467 3.4E-101 T 11-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 PRINTS PR00147 DNA photolyase signature 385 399 1.1E-24 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 PRINTS PR00147 DNA photolyase signature 142 158 1.1E-24 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 PRINTS PR00147 DNA photolyase signature 326 342 1.1E-24 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 PRINTS PR00147 DNA photolyase signature 346 364 1.1E-24 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 326 338 - T 11-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal APT56_12575 369066d6ce2b1ec6f44ec7751a0e6cff 472 SUPERFAMILY SSF52425 2 186 1.02E-49 T 11-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 APT56_09830 73dc1f99acdccf6733273c1f5dbcec91 92 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 3 76 8.3E-26 T 11-10-2018 IPR018680 Protein of unknown function DUF2164 APT56_06950 b9d8ab6f63e46a120c39765e5ab1806e 446 Pfam PF11700 Vacuole effluxer Atg22 like 166 441 6.8E-33 T 11-10-2018 IPR024671 Autophagy-related protein 22-like APT56_06950 b9d8ab6f63e46a120c39765e5ab1806e 446 Gene3D G3DSA:1.20.1250.20 35 260 1.5E-9 T 11-10-2018 APT56_06950 b9d8ab6f63e46a120c39765e5ab1806e 446 SUPERFAMILY SSF103473 36 433 1.44E-39 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_06950 b9d8ab6f63e46a120c39765e5ab1806e 446 Gene3D G3DSA:1.20.1250.20 261 436 2.9E-18 T 11-10-2018 APT56_12160 e281754854e059cb1f8cbe44a1470a05 125 Gene3D G3DSA:3.30.160.170 31 119 5.5E-15 T 11-10-2018 IPR035924 FlaG-like superfamily APT56_12160 e281754854e059cb1f8cbe44a1470a05 125 Pfam PF03646 FlaG protein 37 119 4.5E-23 T 11-10-2018 IPR005186 FlaG protein APT56_12160 e281754854e059cb1f8cbe44a1470a05 125 SUPERFAMILY SSF160214 34 121 4.84E-23 T 11-10-2018 IPR035924 FlaG-like superfamily APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 PRINTS PR00691 Adhesin B signature 34 55 6.6E-10 T 11-10-2018 IPR006129 Adhesin B GO:0007155 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 PRINTS PR00691 Adhesin B signature 310 328 6.6E-10 T 11-10-2018 IPR006129 Adhesin B GO:0007155 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 PRINTS PR00691 Adhesin B signature 59 77 6.6E-10 T 11-10-2018 IPR006129 Adhesin B GO:0007155 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 PRINTS PR00690 Adhesin family signature 34 52 3.9E-17 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 PRINTS PR00690 Adhesin family signature 65 78 3.9E-17 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 PRINTS PR00690 Adhesin family signature 297 316 3.9E-17 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 PRINTS PR00690 Adhesin family signature 78 95 3.9E-17 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 SUPERFAMILY SSF53807 33 332 9.81E-90 T 11-10-2018 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 Pfam PF01297 Zinc-uptake complex component A periplasmic 37 329 6.4E-85 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 Gene3D G3DSA:3.40.50.1980 35 204 4.9E-48 T 11-10-2018 APT56_27205 3730ff1935faddcfceeaf08065cf44b5 333 Gene3D G3DSA:3.40.50.1980 207 332 2.2E-47 T 11-10-2018 APT56_00155 0e67e510ab047c51e73ec075513d31b7 229 Gene3D G3DSA:3.40.50.150 4 229 3.0E-60 T 11-10-2018 APT56_00155 0e67e510ab047c51e73ec075513d31b7 229 SUPERFAMILY SSF53335 17 224 2.27E-31 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_00155 0e67e510ab047c51e73ec075513d31b7 229 PIRSF PIRSF003078 9 226 9.8E-50 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APT56_00155 0e67e510ab047c51e73ec075513d31b7 229 Pfam PF02527 rRNA small subunit methyltransferase G 33 217 4.5E-44 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APT56_00155 0e67e510ab047c51e73ec075513d31b7 229 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 36 222 8.1E-42 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APT56_00155 0e67e510ab047c51e73ec075513d31b7 229 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 24 221 24.206 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 Pfam PF02540 NAD synthase 351 526 1.6E-25 T 11-10-2018 IPR022310 NAD/GMP synthase APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 Gene3D G3DSA:3.60.110.10 3 325 3.9E-85 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 Gene3D G3DSA:3.40.50.620 328 548 1.1E-62 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 SUPERFAMILY SSF56317 13 297 3.66E-49 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 Gene3D G3DSA:1.10.10.1140 564 684 1.0E-45 T 11-10-2018 APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 14 673 28.312 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 TIGRFAM TIGR00552 nadE: NAD+ synthetase 355 525 3.4E-20 T 11-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 SUPERFAMILY SSF52402 330 653 2.62E-63 T 11-10-2018 APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 PIRSF PIRSF006630 11 675 1.4E-157 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 APT56_11600 fcd57492b6b51f76e7c6a0b80edd6887 688 Pfam PF00795 Carbon-nitrogen hydrolase 17 282 2.4E-19 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 SUPERFAMILY SSF53850 91 296 1.49E-34 T 11-10-2018 APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 SUPERFAMILY SSF46785 1 83 8.71E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 Gene3D G3DSA:1.10.10.10 1 88 1.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 Gene3D G3DSA:3.40.190.290 92 301 1.0E-32 T 11-10-2018 APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.8E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 Pfam PF03466 LysR substrate binding domain 89 293 1.2E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20860 9529c438a5f84721dbf6f2999e28c7ca 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22240 8daa79e4e5d53bfa08406933827bd33d 250 SMART SM00382 35 222 4.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22240 8daa79e4e5d53bfa08406933827bd33d 250 PIRSF PIRSF039085 7 250 1.9E-103 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_22240 8daa79e4e5d53bfa08406933827bd33d 250 Gene3D G3DSA:3.40.50.300 7 248 1.9E-77 T 11-10-2018 APT56_22240 8daa79e4e5d53bfa08406933827bd33d 250 SUPERFAMILY SSF52540 10 244 1.77E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22240 8daa79e4e5d53bfa08406933827bd33d 250 Pfam PF00005 ABC transporter 26 174 1.7E-37 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_22240 8daa79e4e5d53bfa08406933827bd33d 250 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05840 4bf656be8f195d646b86ea24f3b3abf1 302 Gene3D G3DSA:3.20.20.70 7 301 3.5E-83 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_05840 4bf656be8f195d646b86ea24f3b3abf1 302 PIRSF PIRSF001365 6 301 8.2E-49 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05840 4bf656be8f195d646b86ea24f3b3abf1 302 Pfam PF00701 Dihydrodipicolinate synthetase family 10 297 6.5E-36 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05840 4bf656be8f195d646b86ea24f3b3abf1 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 138 155 8.6E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05840 4bf656be8f195d646b86ea24f3b3abf1 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 8.6E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05840 4bf656be8f195d646b86ea24f3b3abf1 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 8.6E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05840 4bf656be8f195d646b86ea24f3b3abf1 302 SMART SM01130 8 301 6.6E-69 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05840 4bf656be8f195d646b86ea24f3b3abf1 302 SUPERFAMILY SSF51569 9 297 7.01E-64 T 11-10-2018 APT56_12455 36b78f4787150b6db758c9afae286a2c 245 Gene3D G3DSA:3.30.450.40 74 238 1.1E-45 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_12455 36b78f4787150b6db758c9afae286a2c 245 SUPERFAMILY SSF46785 9 75 4.78E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12455 36b78f4787150b6db758c9afae286a2c 245 Gene3D G3DSA:1.10.10.10 3 73 4.2E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12455 36b78f4787150b6db758c9afae286a2c 245 SMART SM00346 6 94 3.0E-7 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_12455 36b78f4787150b6db758c9afae286a2c 245 Pfam PF01614 Bacterial transcriptional regulator 126 240 8.2E-18 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_12455 36b78f4787150b6db758c9afae286a2c 245 SUPERFAMILY SSF55781 71 242 1.31E-36 T 11-10-2018 APT56_12455 36b78f4787150b6db758c9afae286a2c 245 Pfam PF09339 IclR helix-turn-helix domain 9 57 1.1E-10 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_25500 0b4b703cc0feda4fecf401c558ccfab7 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 30 50 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 APT56_25500 0b4b703cc0feda4fecf401c558ccfab7 93 Gene3D G3DSA:3.10.50.40 2 92 6.1E-37 T 11-10-2018 APT56_25500 0b4b703cc0feda4fecf401c558ccfab7 93 SUPERFAMILY SSF54534 4 92 5.44E-30 T 11-10-2018 APT56_25500 0b4b703cc0feda4fecf401c558ccfab7 93 Pfam PF13616 PPIC-type PPIASE domain 4 92 4.2E-26 T 11-10-2018 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 239 254 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 Gene3D G3DSA:2.40.37.10 29 423 6.6E-146 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 28 427 41.564 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 Gene3D G3DSA:3.20.20.10 47 291 6.6E-146 T 11-10-2018 IPR029066 PLP-binding barrel APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 43 384 8.3E-24 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 49 295 2.9E-68 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 SUPERFAMILY SSF51419 39 298 3.93E-80 T 11-10-2018 IPR029066 PLP-binding barrel APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 SUPERFAMILY SSF50621 275 427 2.3E-51 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 20 426 5.9E-151 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01181 Diaminopimelate decarboxylase signature 177 186 2.4E-30 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01181 Diaminopimelate decarboxylase signature 88 105 2.4E-30 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01181 Diaminopimelate decarboxylase signature 314 332 2.4E-30 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01181 Diaminopimelate decarboxylase signature 394 416 2.4E-30 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 384 397 2.5E-23 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 90 102 2.5E-23 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 70 88 2.5E-23 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 286 305 2.5E-23 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_27610 7693aa6c127dbf286dd1fd2931ccebfd 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 203 216 2.5E-23 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_05150 02d78c478704fcbda03332a9bc2ab344 304 SUPERFAMILY SSF161098 87 287 1.57E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_05150 02d78c478704fcbda03332a9bc2ab344 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 303 6.6E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_05150 02d78c478704fcbda03332a9bc2ab344 304 Gene3D G3DSA:1.10.3720.10 82 300 1.3E-20 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08490 9f006ff10e8f4676dbb0cc1aa379b24c 203 Gene3D G3DSA:3.40.30.10 3 196 3.4E-74 T 11-10-2018 APT56_08490 9f006ff10e8f4676dbb0cc1aa379b24c 203 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 75 1.4E-18 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_08490 9f006ff10e8f4676dbb0cc1aa379b24c 203 Gene3D G3DSA:1.20.1050.10 79 192 3.4E-74 T 11-10-2018 APT56_08490 9f006ff10e8f4676dbb0cc1aa379b24c 203 Pfam PF13410 Glutathione S-transferase, C-terminal domain 120 187 1.6E-8 T 11-10-2018 APT56_08490 9f006ff10e8f4676dbb0cc1aa379b24c 203 SUPERFAMILY SSF52833 1 100 6.87E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_08490 9f006ff10e8f4676dbb0cc1aa379b24c 203 SUPERFAMILY SSF47616 69 201 1.81E-26 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Pfam PF00570 HRDC domain 539 602 4.6E-22 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 9 604 3.8E-241 T 11-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Gene3D G3DSA:3.40.50.300 1 201 2.3E-80 T 11-10-2018 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 SUPERFAMILY SSF52540 5 190 1.7E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 SMART SM00487 15 211 5.9E-28 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Gene3D G3DSA:1.10.10.10 335 522 7.6E-48 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 SMART SM00341 534 607 1.9E-9 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 SUPERFAMILY SSF47819 535 606 2.4E-21 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Pfam PF09382 RQC domain 400 515 4.8E-38 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 SMART SM00490 244 325 6.4E-25 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Pfam PF00271 Helicase conserved C-terminal domain 218 324 5.1E-15 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 9 461 6.4E-151 T 11-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 SUPERFAMILY SSF52540 201 452 4.89E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 SMART SM00956 405 512 5.2E-49 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Pfam PF16124 RecQ zinc-binding 337 398 6.3E-17 T 11-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Pfam PF00270 DEAD/DEAH box helicase 22 180 2.9E-17 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Gene3D G3DSA:3.40.50.300 202 334 1.1E-38 T 11-10-2018 APT56_05255 bd5498dd30f5d43afb3be0a8204a2aea 609 Gene3D G3DSA:1.10.150.80 538 606 4.9E-23 T 11-10-2018 APT56_00895 3772461cdfa9a81cf0c92a3d6e809042 210 ProSitePatterns PS00194 Thioredoxin family active site. 50 68 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APT56_00895 3772461cdfa9a81cf0c92a3d6e809042 210 SUPERFAMILY SSF52833 39 198 2.25E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_00895 3772461cdfa9a81cf0c92a3d6e809042 210 Pfam PF01323 DSBA-like thioredoxin domain 50 184 5.9E-15 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 APT56_00895 3772461cdfa9a81cf0c92a3d6e809042 210 Gene3D G3DSA:3.40.30.10 27 210 9.3E-48 T 11-10-2018 APT56_00895 3772461cdfa9a81cf0c92a3d6e809042 210 PIRSF PIRSF001488 4 210 2.2E-59 T 11-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 153 3.1E-44 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 6.0E-32 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 6.0E-32 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 6.0E-32 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 6.0E-32 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 6.0E-32 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 Gene3D G3DSA:3.30.420.10 3 154 4.2E-46 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 SUPERFAMILY SSF53098 1 154 4.3E-50 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 11-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 150 2.4E-49 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT56_05295 835e8b0c8b63d1225bf5b3aa245dd353 182 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 153 46.516 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 SUPERFAMILY SSF53623 111 342 4.32E-69 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 SUPERFAMILY SSF53623 592 806 1.22E-52 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Gene3D G3DSA:3.40.1390.10 13 110 1.7E-19 T 11-10-2018 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Gene3D G3DSA:3.90.190.20 806 941 2.6E-42 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 SUPERFAMILY SSF53244 346 510 1.02E-41 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 520 937 1.5E-126 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 488 938 31.895 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Pfam PF08245 Mur ligase middle domain 597 786 8.4E-41 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Pfam PF08245 Mur ligase middle domain 120 325 1.6E-46 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 SUPERFAMILY SSF53244 807 937 2.01E-36 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 510 32.308 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Pfam PF01225 Mur ligase family, catalytic domain 515 562 7.4E-6 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Pfam PF01225 Mur ligase family, catalytic domain 30 108 1.5E-10 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Gene3D G3DSA:3.40.1190.10 111 349 8.5E-75 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 SUPERFAMILY SSF63418 29 109 7.98E-18 T 11-10-2018 IPR035911 MurE/MurF, N-terminal APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 30 510 4.5E-141 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Gene3D G3DSA:3.40.1390.10 510 572 3.5E-21 T 11-10-2018 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Gene3D G3DSA:3.40.1190.10 573 804 3.5E-70 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 SUPERFAMILY SSF63418 513 587 1.44E-19 T 11-10-2018 IPR035911 MurE/MurF, N-terminal APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Gene3D G3DSA:3.90.190.20 360 509 1.5E-53 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Pfam PF02875 Mur ligase family, glutamate ligase domain 807 890 5.3E-17 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APT56_04320 ee6a45f4d2e3728766052bffea2f3d63 954 Pfam PF02875 Mur ligase family, glutamate ligase domain 348 443 3.5E-18 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APT56_20545 8873e745e379e932b7cf271012bcb6bc 537 SUPERFAMILY SSF50998 12 306 3.45E-7 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT56_20545 8873e745e379e932b7cf271012bcb6bc 537 Pfam PF13570 PQQ-like domain 441 479 3.5E-4 T 11-10-2018 IPR025666 Pyrrolo-quinoline quinone-like domain APT56_20545 8873e745e379e932b7cf271012bcb6bc 537 Gene3D G3DSA:2.130.10.10 368 528 6.6E-12 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_20545 8873e745e379e932b7cf271012bcb6bc 537 Gene3D G3DSA:2.130.10.10 8 142 1.8E-5 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_20545 8873e745e379e932b7cf271012bcb6bc 537 SUPERFAMILY SSF50998 66 521 1.1E-10 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT56_15230 777f7ae6605130c4a9f3bf87d6860c06 256 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15230 777f7ae6605130c4a9f3bf87d6860c06 256 SMART SM00382 27 208 4.5E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15230 777f7ae6605130c4a9f3bf87d6860c06 256 Pfam PF00005 ABC transporter 20 157 8.8E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15230 777f7ae6605130c4a9f3bf87d6860c06 256 Gene3D G3DSA:3.40.50.300 1 241 3.5E-61 T 11-10-2018 APT56_15230 777f7ae6605130c4a9f3bf87d6860c06 256 SUPERFAMILY SSF52540 3 213 7.66E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09205 9663b29134f51df935ddef4182d40d86 195 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 6 194 7.6E-45 T 11-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 APT56_09205 9663b29134f51df935ddef4182d40d86 195 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 2 195 27.912 T 11-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 APT56_09205 9663b29134f51df935ddef4182d40d86 195 SUPERFAMILY SSF52374 2 194 3.44E-45 T 11-10-2018 APT56_09205 9663b29134f51df935ddef4182d40d86 195 Gene3D G3DSA:3.40.50.620 1 195 2.1E-55 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_09205 9663b29134f51df935ddef4182d40d86 195 Pfam PF01467 Cytidylyltransferase-like 6 169 1.9E-25 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT56_09205 9663b29134f51df935ddef4182d40d86 195 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 65 1.7E-7 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT56_17870 c8ba51cb240682cd0c32cf07142a9b89 512 SUPERFAMILY SSF53067 252 493 1.3E-50 T 11-10-2018 APT56_17870 c8ba51cb240682cd0c32cf07142a9b89 512 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 451 4.3E-39 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APT56_17870 c8ba51cb240682cd0c32cf07142a9b89 512 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 250 5.1E-35 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APT56_17870 c8ba51cb240682cd0c32cf07142a9b89 512 Gene3D G3DSA:3.30.420.40 252 499 1.9E-59 T 11-10-2018 APT56_17870 c8ba51cb240682cd0c32cf07142a9b89 512 Gene3D G3DSA:3.30.420.40 4 250 1.1E-59 T 11-10-2018 APT56_17870 c8ba51cb240682cd0c32cf07142a9b89 512 SUPERFAMILY SSF53067 5 253 1.12E-53 T 11-10-2018 APT56_17870 c8ba51cb240682cd0c32cf07142a9b89 512 PIRSF PIRSF000538 3 499 9.3E-103 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT56_17870 c8ba51cb240682cd0c32cf07142a9b89 512 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT56_14995 0c72c24218d1bd5ab2034dd742f47d65 240 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 213 235 4.1E-11 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_14995 0c72c24218d1bd5ab2034dd742f47d65 240 SMART SM00382 28 212 1.6E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14995 0c72c24218d1bd5ab2034dd742f47d65 240 Pfam PF00005 ABC transporter 20 163 4.1E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14995 0c72c24218d1bd5ab2034dd742f47d65 240 Gene3D G3DSA:3.40.50.300 2 237 5.7E-57 T 11-10-2018 APT56_14995 0c72c24218d1bd5ab2034dd742f47d65 240 SUPERFAMILY SSF52540 3 236 8.91E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09545 65fa11c197497b9def23867d62375d70 78 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 65 3.9E-29 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 APT56_09545 65fa11c197497b9def23867d62375d70 78 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 65 28.324 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 APT56_09545 65fa11c197497b9def23867d62375d70 78 Pfam PF17209 Hfq protein 8 69 1.9E-31 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 APT56_09545 65fa11c197497b9def23867d62375d70 78 SUPERFAMILY SSF50182 8 70 3.47E-24 T 11-10-2018 IPR010920 LSM domain superfamily APT56_09545 65fa11c197497b9def23867d62375d70 78 Gene3D G3DSA:2.30.30.100 1 75 1.6E-33 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 123 578 4.8E-148 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 Gene3D G3DSA:3.50.50.60 271 392 5.4E-118 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 SUPERFAMILY SSF51230 3 96 2.3E-22 T 11-10-2018 IPR011053 Single hybrid motif APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 465 573 6.8E-36 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 124 446 1.2E-55 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 159 169 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 526 541 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 173 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 294 319 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 461 482 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 259 268 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 426 433 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 125 147 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 383 397 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 548 568 4.2E-69 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PIRSF PIRSF000350 39 582 5.6E-88 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 SUPERFAMILY SSF51905 121 456 6.79E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 Gene3D G3DSA:2.40.50.100 4 82 1.8E-19 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 Gene3D G3DSA:3.50.50.60 124 451 5.4E-118 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 SUPERFAMILY SSF55424 461 584 8.08E-41 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 Pfam PF00364 Biotin-requiring enzyme 6 76 6.4E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 382 398 1.2E-38 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 312 1.2E-38 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 411 433 1.2E-38 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 126 145 1.2E-38 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 274 1.2E-38 T 11-10-2018 APT56_11845 58ec991badb2a81f0b7d965f42ac5f34 590 Gene3D G3DSA:3.30.390.30 464 585 1.2E-48 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 1.8E-5 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 1.8E-5 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 1.8E-5 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 208 7.6E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 Pfam PF00072 Response regulator receiver domain 6 121 1.3E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 SMART SM00448 4 121 1.6E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 Gene3D G3DSA:1.10.10.10 146 214 7.5E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 SUPERFAMILY SSF46894 147 215 1.97E-15 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 Gene3D G3DSA:3.40.50.2300 1 141 1.1E-24 T 11-10-2018 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 SMART SM00421 152 209 1.6E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_23725 affe2a536fc0d20de7d24a3399671da0 216 SUPERFAMILY SSF52172 3 133 6.12E-22 T 11-10-2018 IPR011006 CheY-like superfamily APT56_22290 bfaf931c38720d7d3629d460a80555d8 348 Pfam PF03481 Putative GTP-binding controlling metal-binding 210 339 1.4E-19 T 11-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain APT56_22290 bfaf931c38720d7d3629d460a80555d8 348 Gene3D G3DSA:3.90.870.10 1 224 3.8E-71 T 11-10-2018 APT56_22290 bfaf931c38720d7d3629d460a80555d8 348 Gene3D G3DSA:3.40.50.11030 225 346 3.7E-12 T 11-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily APT56_22290 bfaf931c38720d7d3629d460a80555d8 348 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 6 219 5.1E-49 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 APT56_22290 bfaf931c38720d7d3629d460a80555d8 348 SUPERFAMILY SSF55821 7 219 1.5E-52 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APT56_22290 bfaf931c38720d7d3629d460a80555d8 348 Pfam PF01300 Telomere recombination 20 208 1.2E-47 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 APT56_22290 bfaf931c38720d7d3629d460a80555d8 348 PIRSF PIRSF004930 1 344 7.9E-95 T 11-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 Gene3D G3DSA:3.40.47.10 7 282 1.0E-155 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 Gene3D G3DSA:3.40.47.10 142 398 1.0E-155 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 SUPERFAMILY SSF53901 5 276 1.63E-79 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 1.6E-45 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 399 2.8E-135 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 PIRSF PIRSF000429 1 401 1.3E-130 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 SUPERFAMILY SSF53901 277 400 2.88E-46 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 4 401 1.0E-217 T 11-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 APT56_18215 00ea74b3ccf3b92dd89f44cd83690004 401 Pfam PF00108 Thiolase, N-terminal domain 6 268 4.5E-75 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_13650 c43bc95dc9659f3b6ce277b127eed6c6 557 Gene3D G3DSA:3.30.70.2700 1 84 3.8E-19 T 11-10-2018 APT56_13650 c43bc95dc9659f3b6ce277b127eed6c6 557 Gene3D G3DSA:3.50.50.60 473 541 8.2E-15 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13650 c43bc95dc9659f3b6ce277b127eed6c6 557 Gene3D G3DSA:3.50.50.60 89 309 4.9E-83 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13650 c43bc95dc9659f3b6ce277b127eed6c6 557 PIRSF PIRSF038984 1 542 1.8E-236 T 11-10-2018 IPR028348 FAD dependent protein APT56_13650 c43bc95dc9659f3b6ce277b127eed6c6 557 SUPERFAMILY SSF51905 106 536 1.02E-34 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_01395 549a2565f8172178bba6a1fb6542d268 385 SUPERFAMILY SSF81464 28 122 2.13E-25 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 PRINTS PR01166 Cytochrome c oxidase subunit II signature 102 122 4.5E-40 T 11-10-2018 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 PRINTS PR01166 Cytochrome c oxidase subunit II signature 174 195 4.5E-40 T 11-10-2018 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 PRINTS PR01166 Cytochrome c oxidase subunit II signature 90 102 4.5E-40 T 11-10-2018 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 PRINTS PR01166 Cytochrome c oxidase subunit II signature 198 218 4.5E-40 T 11-10-2018 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 PRINTS PR01166 Cytochrome c oxidase subunit II signature 218 235 4.5E-40 T 11-10-2018 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 PRINTS PR01166 Cytochrome c oxidase subunit II signature 124 143 4.5E-40 T 11-10-2018 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 PRINTS PR01166 Cytochrome c oxidase subunit II signature 236 253 4.5E-40 T 11-10-2018 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 42 264 3.0E-58 T 11-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 199 247 - T 11-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 Gene3D G3DSA:1.10.760.10 268 385 1.6E-26 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 31 113 7.7E-13 T 11-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 SUPERFAMILY SSF49503 120 318 2.13E-54 T 11-10-2018 IPR008972 Cupredoxin APT56_01395 549a2565f8172178bba6a1fb6542d268 385 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 286 360 3.1E-12 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 128 253 1.9E-38 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 SUPERFAMILY SSF46626 275 370 1.07E-22 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 Gene3D G3DSA:1.10.287.90 29 124 2.9E-23 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01395 549a2565f8172178bba6a1fb6542d268 385 Gene3D G3DSA:2.60.40.420 125 267 1.9E-52 T 11-10-2018 IPR008972 Cupredoxin APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Gene3D G3DSA:3.30.70.870 286 367 8.6E-36 T 11-10-2018 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 TIGRFAM TIGR01393 lepA: elongation factor 4 3 595 1.2E-297 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Gene3D G3DSA:3.30.70.3380 368 478 3.4E-43 T 11-10-2018 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 SUPERFAMILY SSF50447 165 288 2.65E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 SUPERFAMILY SSF54980 292 370 9.35E-19 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Gene3D G3DSA:3.40.50.300 1 185 4.5E-72 T 11-10-2018 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Pfam PF06421 GTP-binding protein LepA C-terminus 487 593 3.4E-48 T 11-10-2018 IPR013842 GTP-binding protein LepA, C-terminal APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Pfam PF03144 Elongation factor Tu domain 2 205 275 4.5E-10 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Gene3D G3DSA:2.40.30.10 186 285 6.6E-33 T 11-10-2018 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 SMART SM00838 398 486 0.0011 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Pfam PF00679 Elongation factor G C-terminus 399 479 3.5E-22 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Gene3D G3DSA:3.30.70.2570 479 553 2.7E-30 T 11-10-2018 IPR038363 LepA, C-terminal domain superfamily APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Pfam PF00009 Elongation factor Tu GTP binding domain 3 181 1.2E-52 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 PRINTS PR00315 GTP-binding elongation factor signature 6 19 2.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 PRINTS PR00315 GTP-binding elongation factor signature 90 101 2.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 PRINTS PR00315 GTP-binding elongation factor signature 74 84 2.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 PRINTS PR00315 GTP-binding elongation factor signature 126 135 2.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 PRINTS PR00315 GTP-binding elongation factor signature 49 57 2.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 300.706 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 175 7.5E-20 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 SUPERFAMILY SSF52540 2 205 3.97E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06830 ba24abca2e6c3e84fb513bebbafc6176 597 SUPERFAMILY SSF54980 399 493 1.34E-26 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 2.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 2.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 2.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 Pfam PF00106 short chain dehydrogenase 12 199 2.7E-60 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 Gene3D G3DSA:3.40.50.720 1 262 4.6E-85 T 11-10-2018 APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03065 7e62d921af53d2db52ea1b3d065e6e49 263 SUPERFAMILY SSF51735 6 262 2.07E-82 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_15050 4192be8b3b6295a7082463f325c44456 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15050 4192be8b3b6295a7082463f325c44456 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15050 4192be8b3b6295a7082463f325c44456 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15050 4192be8b3b6295a7082463f325c44456 301 SUPERFAMILY SSF53850 90 295 7.6E-31 T 11-10-2018 APT56_15050 4192be8b3b6295a7082463f325c44456 301 Pfam PF03466 LysR substrate binding domain 90 291 5.9E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_15050 4192be8b3b6295a7082463f325c44456 301 Gene3D G3DSA:3.40.190.290 91 298 6.4E-26 T 11-10-2018 APT56_15050 4192be8b3b6295a7082463f325c44456 301 Gene3D G3DSA:1.10.10.10 1 90 2.5E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15050 4192be8b3b6295a7082463f325c44456 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.3E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15050 4192be8b3b6295a7082463f325c44456 301 SUPERFAMILY SSF46785 2 110 1.67E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14990 d06b9271c5093212e7f9a9666b86ebca 235 SUPERFAMILY SSF52540 2 233 1.46E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14990 d06b9271c5093212e7f9a9666b86ebca 235 Pfam PF00005 ABC transporter 18 162 4.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14990 d06b9271c5093212e7f9a9666b86ebca 235 SMART SM00382 26 214 2.6E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14990 d06b9271c5093212e7f9a9666b86ebca 235 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_14990 d06b9271c5093212e7f9a9666b86ebca 235 Gene3D G3DSA:3.40.50.300 1 235 7.1E-62 T 11-10-2018 APT56_03530 1265ce2767e4b46a2c283c8e15bf37c0 416 Gene3D G3DSA:3.40.640.10 37 286 9.5E-182 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_03530 1265ce2767e4b46a2c283c8e15bf37c0 416 PIRSF PIRSF000412 1 416 3.9E-166 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APT56_03530 1265ce2767e4b46a2c283c8e15bf37c0 416 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 11-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APT56_03530 1265ce2767e4b46a2c283c8e15bf37c0 416 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 414 52.002 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APT56_03530 1265ce2767e4b46a2c283c8e15bf37c0 416 Gene3D G3DSA:3.90.1150.10 10 392 9.5E-182 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_03530 1265ce2767e4b46a2c283c8e15bf37c0 416 SUPERFAMILY SSF53383 8 414 1.27E-178 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_03530 1265ce2767e4b46a2c283c8e15bf37c0 416 Pfam PF00464 Serine hydroxymethyltransferase 8 382 4.2E-171 T 11-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 Gene3D G3DSA:3.40.50.2300 37 167 1.2E-22 T 11-10-2018 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 225 1.5E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 213 1.5E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 197 1.5E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 SMART SM00448 38 153 6.8E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 Gene3D G3DSA:1.10.10.10 170 240 9.1E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 SUPERFAMILY SSF52172 38 164 1.57E-21 T 11-10-2018 IPR011006 CheY-like superfamily APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 Pfam PF00196 Bacterial regulatory proteins, luxR family 182 235 3.4E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 ProSitePatterns PS00622 LuxR-type HTH domain signature. 197 224 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 SMART SM00421 180 237 1.7E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 SUPERFAMILY SSF46894 174 238 4.76E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_09960 43ffe3a7db0d28b7d37a868bfa923d16 243 Pfam PF00072 Response regulator receiver domain 40 153 3.7E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_05835 61cd2b6709d4f75cd055cb06b102432f 375 SMART SM00922 149 247 3.6E-27 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal APT56_05835 61cd2b6709d4f75cd055cb06b102432f 375 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 19 127 3.0E-21 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain APT56_05835 61cd2b6709d4f75cd055cb06b102432f 375 Pfam PF13378 Enolase C-terminal domain-like 153 362 3.1E-57 T 11-10-2018 IPR029065 Enolase C-terminal domain-like APT56_05835 61cd2b6709d4f75cd055cb06b102432f 375 Gene3D G3DSA:3.20.20.120 126 359 5.3E-72 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_05835 61cd2b6709d4f75cd055cb06b102432f 375 SUPERFAMILY SSF54826 4 127 2.65E-29 T 11-10-2018 APT56_05835 61cd2b6709d4f75cd055cb06b102432f 375 Gene3D G3DSA:3.30.390.10 2 125 1.4E-32 T 11-10-2018 IPR029017 Enolase-like, N-terminal APT56_05835 61cd2b6709d4f75cd055cb06b102432f 375 SUPERFAMILY SSF51604 115 367 4.98E-71 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_14585 f46eb9771e7c968a8f8a54d638627777 255 SUPERFAMILY SSF52540 5 253 9.99E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14585 f46eb9771e7c968a8f8a54d638627777 255 Pfam PF00005 ABC transporter 22 181 1.4E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14585 f46eb9771e7c968a8f8a54d638627777 255 SMART SM00382 30 231 1.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14585 f46eb9771e7c968a8f8a54d638627777 255 Gene3D G3DSA:3.40.50.300 3 254 1.1E-63 T 11-10-2018 APT56_14585 f46eb9771e7c968a8f8a54d638627777 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 232 253 4.7E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 Gene3D G3DSA:3.30.260.10 136 410 1.3E-237 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 Gene3D G3DSA:3.50.7.10 192 372 1.3E-237 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 Hamap MF_00600 60 kDa chaperonin [groL]. 2 538 40.725 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 SUPERFAMILY SSF54849 137 203 3.2E-24 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 SUPERFAMILY SSF52029 184 376 1.19E-81 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 1.4E-253 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 522 1.7E-98 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 Gene3D G3DSA:1.10.560.10 8 521 1.3E-237 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 PRINTS PR00298 60kDa chaperonin signature 27 53 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 PRINTS PR00298 60kDa chaperonin signature 350 375 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 PRINTS PR00298 60kDa chaperonin signature 398 419 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 PRINTS PR00298 60kDa chaperonin signature 268 291 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 PRINTS PR00298 60kDa chaperonin signature 83 110 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_17435 664a7f4cfc2212f08ccedda31c201241 540 SUPERFAMILY SSF48592 7 521 9.16E-77 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily APT56_02785 988b72c1cc28a743cba4a441905fbb2d 237 SMART SM00382 27 214 6.1E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02785 988b72c1cc28a743cba4a441905fbb2d 237 Gene3D G3DSA:3.40.50.300 1 227 3.6E-64 T 11-10-2018 APT56_02785 988b72c1cc28a743cba4a441905fbb2d 237 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_02785 988b72c1cc28a743cba4a441905fbb2d 237 SUPERFAMILY SSF52540 1 221 6.01E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02785 988b72c1cc28a743cba4a441905fbb2d 237 Pfam PF00005 ABC transporter 18 166 7.7E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19250 1b1464c6a2462b1053248f342cd4b623 528 Gene3D G3DSA:3.40.190.10 17 277 3.8E-77 T 11-10-2018 APT56_19250 1b1464c6a2462b1053248f342cd4b623 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 429 3.5E-90 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_19250 1b1464c6a2462b1053248f342cd4b623 528 SUPERFAMILY SSF53850 28 526 2.71E-134 T 11-10-2018 APT56_19250 1b1464c6a2462b1053248f342cd4b623 528 Gene3D G3DSA:3.10.105.10 278 499 9.5E-53 T 11-10-2018 APT56_19250 1b1464c6a2462b1053248f342cd4b623 528 PIRSF PIRSF002741 3 528 2.8E-143 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_27530 abaede2b8aaf94bc4d2c63d0ed66bd99 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 5.1E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_27530 abaede2b8aaf94bc4d2c63d0ed66bd99 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 5.1E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_27530 abaede2b8aaf94bc4d2c63d0ed66bd99 196 Gene3D G3DSA:1.10.357.10 3 189 2.6E-50 T 11-10-2018 APT56_27530 abaede2b8aaf94bc4d2c63d0ed66bd99 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 1.1E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_27530 abaede2b8aaf94bc4d2c63d0ed66bd99 196 SUPERFAMILY SSF48498 79 187 3.5E-19 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_27530 abaede2b8aaf94bc4d2c63d0ed66bd99 196 SUPERFAMILY SSF46689 5 76 3.08E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_14615 1f94ceede54dd9d67225e708b40d1ad3 437 Pfam PF13416 Bacterial extracellular solute-binding protein 45 361 1.1E-50 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_14615 1f94ceede54dd9d67225e708b40d1ad3 437 SUPERFAMILY SSF53850 22 426 4.21E-82 T 11-10-2018 APT56_14615 1f94ceede54dd9d67225e708b40d1ad3 437 Gene3D G3DSA:3.40.190.10 30 383 1.4E-141 T 11-10-2018 APT56_14615 1f94ceede54dd9d67225e708b40d1ad3 437 Gene3D G3DSA:3.40.190.10 146 423 1.4E-141 T 11-10-2018 APT56_14615 1f94ceede54dd9d67225e708b40d1ad3 437 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 141 158 - T 11-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 SUPERFAMILY SSF56601 37 293 2.37E-71 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 PRINTS PR00118 Beta-lactamase class A signature 41 65 2.2E-53 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 PRINTS PR00118 Beta-lactamase class A signature 72 89 2.2E-53 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 PRINTS PR00118 Beta-lactamase class A signature 151 175 2.2E-53 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 PRINTS PR00118 Beta-lactamase class A signature 230 245 2.2E-53 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 PRINTS PR00118 Beta-lactamase class A signature 115 140 2.2E-53 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 PRINTS PR00118 Beta-lactamase class A signature 177 202 2.2E-53 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 PRINTS PR00118 Beta-lactamase class A signature 213 228 2.2E-53 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 Pfam PF13354 Beta-lactamase enzyme family 61 269 1.2E-38 T 11-10-2018 APT56_06220 9310559ee66d13df9790369ed2b6a2bc 297 Gene3D G3DSA:3.40.710.10 36 296 2.0E-76 T 11-10-2018 APT56_06480 867ba501eb18f1b2022cfd8cb2e319b3 227 SUPERFAMILY SSF53448 5 227 1.26E-50 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_06480 867ba501eb18f1b2022cfd8cb2e319b3 227 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 7 225 3.4E-60 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APT56_06480 867ba501eb18f1b2022cfd8cb2e319b3 227 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 105 112 - T 11-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APT56_06480 867ba501eb18f1b2022cfd8cb2e319b3 227 Gene3D G3DSA:3.90.550.10 1 227 2.3E-63 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_06480 867ba501eb18f1b2022cfd8cb2e319b3 227 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 225 3.0E-56 T 11-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APT56_06480 867ba501eb18f1b2022cfd8cb2e319b3 227 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 4 227 41.397 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APT56_22315 ba2097a423f165252ee4c1ca05babf39 151 Gene3D G3DSA:3.90.1590.10 2 130 7.3E-14 T 11-10-2018 APT56_22315 ba2097a423f165252ee4c1ca05babf39 151 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 40 129 3.6E-23 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 APT56_22315 ba2097a423f165252ee4c1ca05babf39 151 SUPERFAMILY SSF51316 14 148 5.02E-40 T 11-10-2018 IPR011057 Mss4-like superfamily APT56_22905 b521476b9a5b8cc15f5ee326e07d0343 185 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 39 179 1.7E-42 T 11-10-2018 APT56_22905 b521476b9a5b8cc15f5ee326e07d0343 185 Gene3D G3DSA:1.10.10.1590 31 98 3.6E-14 T 11-10-2018 APT56_22905 b521476b9a5b8cc15f5ee326e07d0343 185 PIRSF PIRSF000216 18 185 2.3E-49 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22905 b521476b9a5b8cc15f5ee326e07d0343 185 Gene3D G3DSA:3.40.30.10 99 185 3.4E-22 T 11-10-2018 APT56_22905 b521476b9a5b8cc15f5ee326e07d0343 185 SUPERFAMILY SSF52833 34 180 4.7E-47 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_01375 0fad119df46fd12b0b6ea42194104798 294 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 262 288 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 SUPERFAMILY SSF88659 199 292 7.29E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_01375 0fad119df46fd12b0b6ea42194104798 294 Gene3D G3DSA:1.10.601.10 24 137 4.6E-31 T 11-10-2018 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 89 102 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 9 294 51.701 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 Pfam PF04542 Sigma-70 region 2 65 134 9.6E-19 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 27 293 8.3E-123 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 Gene3D G3DSA:1.10.10.10 221 293 4.9E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01375 0fad119df46fd12b0b6ea42194104798 294 SUPERFAMILY SSF88946 27 134 3.27E-39 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 Pfam PF04545 Sigma-70, region 4 238 289 5.1E-16 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 PRINTS PR00046 Major sigma-70 factor signature 242 254 2.9E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 PRINTS PR00046 Major sigma-70 factor signature 89 102 2.9E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 PRINTS PR00046 Major sigma-70 factor signature 262 277 2.9E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 PRINTS PR00046 Major sigma-70 factor signature 277 288 2.9E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_01375 0fad119df46fd12b0b6ea42194104798 294 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 61 290 2.2E-34 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 SUPERFAMILY SSF53850 91 296 1.25E-32 T 11-10-2018 APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 Gene3D G3DSA:3.40.190.10 172 269 7.4E-59 T 11-10-2018 APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 Gene3D G3DSA:3.40.190.10 94 293 7.4E-59 T 11-10-2018 APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 1.4E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 Pfam PF03466 LysR substrate binding domain 96 298 5.0E-15 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 Gene3D G3DSA:1.10.10.10 1 90 5.7E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24545 38d30a7e014f5a9101705e91955c39c6 305 SUPERFAMILY SSF46785 5 86 1.74E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00585 3a935391935aa450376dae6f63fc1282 226 SUPERFAMILY SSF46689 9 89 2.6E-21 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_00585 3a935391935aa450376dae6f63fc1282 226 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 1.2E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_00585 3a935391935aa450376dae6f63fc1282 226 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 1.2E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_00585 3a935391935aa450376dae6f63fc1282 226 Gene3D G3DSA:1.10.357.10 17 207 1.7E-48 T 11-10-2018 APT56_00585 3a935391935aa450376dae6f63fc1282 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 1.3E-17 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.3E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 2.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 2.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 2.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 Gene3D G3DSA:3.40.50.720 1 253 6.6E-66 T 11-10-2018 APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 246 3.3E-57 T 11-10-2018 APT56_10865 4934c76f100d1af02bc5a71dce6f8833 262 SUPERFAMILY SSF51735 6 249 8.48E-67 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_23845 43f5897dcd18f00be58b355eead25029 317 Pfam PF12833 Helix-turn-helix domain 236 313 5.1E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23845 43f5897dcd18f00be58b355eead25029 317 SMART SM00342 229 312 8.4E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23845 43f5897dcd18f00be58b355eead25029 317 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 267 308 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_23845 43f5897dcd18f00be58b355eead25029 317 SUPERFAMILY SSF46689 267 313 8.96E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23845 43f5897dcd18f00be58b355eead25029 317 Gene3D G3DSA:1.10.10.60 210 316 1.4E-21 T 11-10-2018 APT56_27685 a09def9db816f8581901a480ad8951b8 72 Gene3D G3DSA:2.40.50.140 1 72 2.2E-36 T 11-10-2018 APT56_27685 a09def9db816f8581901a480ad8951b8 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.082 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 APT56_27685 a09def9db816f8581901a480ad8951b8 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 7.8E-27 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 APT56_27685 a09def9db816f8581901a480ad8951b8 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 8.8E-37 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 APT56_27685 a09def9db816f8581901a480ad8951b8 72 SUPERFAMILY SSF50249 1 70 6.0E-27 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 Gene3D G3DSA:3.10.20.30 433 507 1.8E-32 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 SUPERFAMILY SSF81271 427 500 3.05E-23 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 Pfam PF13328 HD domain 78 227 3.7E-51 T 11-10-2018 IPR003607 HD/PDEase domain APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 78 759 1.1E-220 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 Pfam PF04607 Region found in RelA / SpoT proteins 287 395 8.2E-30 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 SMART SM00954 287 397 2.4E-57 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 Gene3D G3DSA:3.30.460.10 245 377 9.8E-42 T 11-10-2018 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 Gene3D G3DSA:3.30.70.260 688 764 1.8E-9 T 11-10-2018 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 SUPERFAMILY SSF55021 691 758 7.63E-5 T 11-10-2018 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 SUPERFAMILY SSF109604 59 241 1.02E-70 T 11-10-2018 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 Pfam PF02824 TGS domain 440 499 7.0E-24 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 Pfam PF13291 ACT domain 688 761 1.2E-15 T 11-10-2018 IPR002912 ACT domain APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 SMART SM00471 93 205 2.9E-8 T 11-10-2018 IPR003607 HD/PDEase domain APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 SUPERFAMILY SSF81301 233 444 3.27E-59 T 11-10-2018 APT56_14930 87b4801459cdc2cff1b32291bfa9e837 764 Gene3D G3DSA:1.10.3210.10 53 242 2.2E-77 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 SUPERFAMILY SSF82693 156 333 4.53E-19 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Gene3D G3DSA:3.30.70.1430 570 675 0.0 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Pfam PF00873 AcrB/AcrD/AcrF family 6 1038 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 SUPERFAMILY SSF82693 573 668 2.35E-8 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1046 0.0 T 11-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 SUPERFAMILY SSF82693 42 128 3.66E-22 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 SUPERFAMILY SSF82866 299 506 1.31E-35 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Gene3D G3DSA:3.30.70.1440 676 879 0.0 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Gene3D G3DSA:3.30.70.1320 135 333 0.0 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Gene3D G3DSA:1.20.1640.10 515 1034 0.0 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 SUPERFAMILY SSF82714 726 816 1.18E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Gene3D G3DSA:3.30.2090.10 189 280 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Gene3D G3DSA:3.30.2090.10 727 821 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Gene3D G3DSA:3.30.70.1430 42 829 0.0 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 1.8E-20 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.8E-20 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.8E-20 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 1.8E-20 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.8E-20 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 Gene3D G3DSA:1.20.1640.10 15 514 0.0 T 11-10-2018 APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 SUPERFAMILY SSF82714 193 275 1.01E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_01605 7ac7bbefca38aa18ed5962aca2e42ba8 1061 SUPERFAMILY SSF82866 815 1040 4.19E-57 T 11-10-2018 APT56_23150 0e08edd19315804922244c26c4d9e9bd 332 Gene3D G3DSA:1.10.3470.10 4 331 6.3E-96 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_23150 0e08edd19315804922244c26c4d9e9bd 332 SUPERFAMILY SSF81345 4 327 1.31E-76 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_23150 0e08edd19315804922244c26c4d9e9bd 332 Pfam PF01032 FecCD transport family 18 327 5.7E-82 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APT56_13275 444501c2f20963ccf8087a6247fe90ce 150 ProSitePatterns PS01117 MarR-type HTH domain signature. 80 114 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_13275 444501c2f20963ccf8087a6247fe90ce 150 SUPERFAMILY SSF46785 10 142 5.37E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13275 444501c2f20963ccf8087a6247fe90ce 150 SMART SM00347 34 140 1.8E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_13275 444501c2f20963ccf8087a6247fe90ce 150 Gene3D G3DSA:1.10.10.10 5 144 2.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13275 444501c2f20963ccf8087a6247fe90ce 150 Pfam PF12802 MarR family 41 105 5.0E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_01265 3a69cb69e8c4f2718b4e670f8c217c31 167 Pfam PF02470 MlaD protein 39 116 2.6E-22 T 11-10-2018 IPR003399 Mce/MlaD APT56_01265 3a69cb69e8c4f2718b4e670f8c217c31 167 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 146 1.3E-59 T 11-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 APT56_22385 e725d9661250789746a164680d892e9a 399 Gene3D G3DSA:2.30.40.10 8 53 8.7E-14 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_22385 e725d9661250789746a164680d892e9a 399 Gene3D G3DSA:3.20.20.140 54 202 8.7E-14 T 11-10-2018 APT56_22385 e725d9661250789746a164680d892e9a 399 Pfam PF01979 Amidohydrolase family 51 359 1.5E-14 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_22385 e725d9661250789746a164680d892e9a 399 PIRSF PIRSF038971 2 377 1.3E-112 T 11-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_22385 e725d9661250789746a164680d892e9a 399 Gene3D G3DSA:2.30.40.10 307 379 2.8E-7 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_22385 e725d9661250789746a164680d892e9a 399 SUPERFAMILY SSF51338 2 379 1.9E-16 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_22385 e725d9661250789746a164680d892e9a 399 SUPERFAMILY SSF51556 54 343 4.03E-18 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_22385 e725d9661250789746a164680d892e9a 399 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 6 377 9.8E-119 T 11-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_23270 a752c9b2448f9ccb8324ee1487a78680 253 Pfam PF00005 ABC transporter 17 171 5.7E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_23270 a752c9b2448f9ccb8324ee1487a78680 253 PIRSF PIRSF039085 1 247 2.3E-94 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_23270 a752c9b2448f9ccb8324ee1487a78680 253 Gene3D G3DSA:3.40.50.300 1 252 5.9E-69 T 11-10-2018 APT56_23270 a752c9b2448f9ccb8324ee1487a78680 253 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_23270 a752c9b2448f9ccb8324ee1487a78680 253 SMART SM00382 26 219 3.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23270 a752c9b2448f9ccb8324ee1487a78680 253 SUPERFAMILY SSF52540 1 241 1.05E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15245 55d4ed631b10013e417f169b83139f96 349 Gene3D G3DSA:3.40.50.10740 53 200 1.8E-33 T 11-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal APT56_15245 55d4ed631b10013e417f169b83139f96 349 Pfam PF02016 LD-carboxypeptidase 57 331 5.6E-70 T 11-10-2018 IPR003507 Peptidase family S66 APT56_15245 55d4ed631b10013e417f169b83139f96 349 PIRSF PIRSF028757 52 348 1.8E-69 T 11-10-2018 IPR003507 Peptidase family S66 APT56_15245 55d4ed631b10013e417f169b83139f96 349 SUPERFAMILY SSF141986 186 337 1.07E-42 T 11-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily APT56_15245 55d4ed631b10013e417f169b83139f96 349 Gene3D G3DSA:3.50.30.60 204 339 4.7E-44 T 11-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily APT56_15245 55d4ed631b10013e417f169b83139f96 349 SUPERFAMILY SSF52317 56 203 5.49E-30 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_17210 3a27d4f3ba57fb0cf6a9f8f2ecda6cd0 432 SUPERFAMILY SSF53474 66 426 9.9E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_17210 3a27d4f3ba57fb0cf6a9f8f2ecda6cd0 432 Gene3D G3DSA:2.60.40.2240 1 130 1.1E-25 T 11-10-2018 APT56_17210 3a27d4f3ba57fb0cf6a9f8f2ecda6cd0 432 Gene3D G3DSA:3.40.50.1820 131 432 7.5E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_17210 3a27d4f3ba57fb0cf6a9f8f2ecda6cd0 432 PIRSF PIRSF016521 3 432 2.8E-111 T 11-10-2018 IPR016662 Acyl-CoA thioesterase, long chain GO:0006637|GO:0016790 APT56_17210 3a27d4f3ba57fb0cf6a9f8f2ecda6cd0 432 Pfam PF04775 Acyl-CoA thioester hydrolase/BAAT N-terminal region 17 135 1.5E-24 T 11-10-2018 IPR006862 Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase APT56_17210 3a27d4f3ba57fb0cf6a9f8f2ecda6cd0 432 Pfam PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal 201 429 3.1E-33 T 11-10-2018 IPR014940 BAAT/Acyl-CoA thioester hydrolase C-terminal APT56_22050 f3dc64dc652bd9eb0b58c5134253a272 317 Gene3D G3DSA:3.20.20.70 1 315 4.5E-98 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_22050 f3dc64dc652bd9eb0b58c5134253a272 317 SUPERFAMILY SSF51412 2 311 9.31E-63 T 11-10-2018 APT56_22050 f3dc64dc652bd9eb0b58c5134253a272 317 Pfam PF03060 Nitronate monooxygenase 5 303 1.4E-58 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 SMART SM00387 605 720 2.1E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_20615 39450b73337980c9ab5940cb562350f5 1091 Gene3D G3DSA:3.30.565.10 559 724 9.4E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20615 39450b73337980c9ab5940cb562350f5 1091 SUPERFAMILY SSF52172 866 984 4.98E-34 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20615 39450b73337980c9ab5940cb562350f5 1091 SUPERFAMILY SSF47226 962 1081 1.31E-11 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 SUPERFAMILY SSF47384 478 559 1.14E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 Pfam PF00512 His Kinase A (phospho-acceptor) domain 496 557 1.1E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 Pfam PF00072 Response regulator receiver domain 869 978 7.6E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 Pfam PF01627 Hpt domain 1006 1084 1.2E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 PRINTS PR00344 Bacterial sensor protein C-terminal signature 680 698 2.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 PRINTS PR00344 Bacterial sensor protein C-terminal signature 646 660 2.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 PRINTS PR00344 Bacterial sensor protein C-terminal signature 664 674 2.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 PRINTS PR00344 Bacterial sensor protein C-terminal signature 704 717 2.3E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 SMART SM00388 493 558 1.6E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 SMART SM00448 867 978 2.2E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 Gene3D G3DSA:3.40.50.2300 863 986 4.9E-33 T 11-10-2018 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 SUPERFAMILY SSF55874 547 719 1.2E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20615 39450b73337980c9ab5940cb562350f5 1091 Gene3D G3DSA:1.10.287.130 468 556 2.2E-22 T 11-10-2018 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 Gene3D G3DSA:1.20.120.160 993 1091 2.4E-13 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APT56_20615 39450b73337980c9ab5940cb562350f5 1091 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 605 719 4.5E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_25535 92bf1ca6e6f66f47ffaa8399ea223d5b 399 Pfam PF13458 Periplasmic binding protein 27 362 5.2E-83 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_25535 92bf1ca6e6f66f47ffaa8399ea223d5b 399 Gene3D G3DSA:3.40.50.2300 27 328 1.3E-105 T 11-10-2018 APT56_25535 92bf1ca6e6f66f47ffaa8399ea223d5b 399 Gene3D G3DSA:3.40.50.2300 146 277 1.3E-105 T 11-10-2018 APT56_25535 92bf1ca6e6f66f47ffaa8399ea223d5b 399 SUPERFAMILY SSF53822 27 396 2.78E-84 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_18555 4125ad08d1571f2a7b1c1fe04f0036a2 274 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 267 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_18555 4125ad08d1571f2a7b1c1fe04f0036a2 274 SUPERFAMILY SSF46689 172 222 5.02E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18555 4125ad08d1571f2a7b1c1fe04f0036a2 274 Gene3D G3DSA:1.10.10.60 169 272 4.9E-24 T 11-10-2018 APT56_18555 4125ad08d1571f2a7b1c1fe04f0036a2 274 SUPERFAMILY SSF46689 226 269 3.32E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18555 4125ad08d1571f2a7b1c1fe04f0036a2 274 SMART SM00342 189 271 1.9E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_18555 4125ad08d1571f2a7b1c1fe04f0036a2 274 Pfam PF12833 Helix-turn-helix domain 195 269 8.0E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SUPERFAMILY SSF55874 410 569 8.29E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 Gene3D G3DSA:3.30.565.10 420 580 6.9E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 Gene3D G3DSA:1.10.287.130 356 418 5.4E-18 T 11-10-2018 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SMART SM00086 179 221 4.8E-4 T 11-10-2018 IPR001610 PAC motif APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 516 9.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 547 9.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 518 528 9.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 566 9.1E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SMART SM00387 463 569 9.3E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 106 228 1.5E-24 T 11-10-2018 IPR000014 PAS domain APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 Pfam PF00512 His Kinase A (phospho-acceptor) domain 352 418 4.8E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SUPERFAMILY SSF47384 339 418 1.08E-8 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 Pfam PF13188 PAS domain 233 283 0.011 T 11-10-2018 IPR000014 PAS domain APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SMART SM00091 233 304 49.0 T 11-10-2018 IPR000014 PAS domain APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SMART SM00091 105 172 1.1E-8 T 11-10-2018 IPR000014 PAS domain APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 464 566 4.0E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 Pfam PF08448 PAS fold 114 223 8.4E-16 T 11-10-2018 IPR013656 PAS fold-4 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SUPERFAMILY SSF55785 218 327 8.9E-8 T 11-10-2018 IPR035965 PAS domain superfamily APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 Gene3D G3DSA:3.30.450.20 101 236 3.8E-26 T 11-10-2018 APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SUPERFAMILY SSF55785 94 219 5.23E-24 T 11-10-2018 IPR035965 PAS domain superfamily APT56_11830 72b1a210e6f931352ece3594e6f93a61 584 SMART SM00388 351 421 3.9E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_27350 06460d57b42b457ed614d175eae7da72 905 Pfam PF00535 Glycosyl transferase family 2 602 740 9.5E-21 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_27350 06460d57b42b457ed614d175eae7da72 905 Gene3D G3DSA:3.90.550.10 595 825 2.5E-33 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_27350 06460d57b42b457ed614d175eae7da72 905 Gene3D G3DSA:3.40.50.2000 329 390 1.6E-14 T 11-10-2018 APT56_27350 06460d57b42b457ed614d175eae7da72 905 Pfam PF13692 Glycosyl transferases group 1 409 551 8.2E-8 T 11-10-2018 APT56_27350 06460d57b42b457ed614d175eae7da72 905 SUPERFAMILY SSF53448 591 838 1.97E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_27350 06460d57b42b457ed614d175eae7da72 905 Gene3D G3DSA:3.40.50.2000 391 566 1.6E-14 T 11-10-2018 APT56_27350 06460d57b42b457ed614d175eae7da72 905 SUPERFAMILY SSF53756 286 573 2.25E-20 T 11-10-2018 APT56_08015 ec2cb24cdc4bec1d8b2ec7e697715041 580 Gene3D G3DSA:1.10.3720.10 307 572 4.7E-29 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08015 ec2cb24cdc4bec1d8b2ec7e697715041 580 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 286 2.8E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_08015 ec2cb24cdc4bec1d8b2ec7e697715041 580 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 393 561 1.0E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_08015 ec2cb24cdc4bec1d8b2ec7e697715041 580 SUPERFAMILY SSF161098 35 283 7.94E-45 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08015 ec2cb24cdc4bec1d8b2ec7e697715041 580 Gene3D G3DSA:1.10.3720.10 30 290 4.9E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08015 ec2cb24cdc4bec1d8b2ec7e697715041 580 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 36 576 1.8E-247 T 11-10-2018 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative APT56_08015 ec2cb24cdc4bec1d8b2ec7e697715041 580 SUPERFAMILY SSF161098 317 559 3.92E-32 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03975 a5c6b7ed749062ae054d2a90123bd8ca 216 Gene3D G3DSA:1.20.120.530 78 208 2.3E-17 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_03975 a5c6b7ed749062ae054d2a90123bd8ca 216 Gene3D G3DSA:1.10.10.10 1 73 3.9E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03975 a5c6b7ed749062ae054d2a90123bd8ca 216 SMART SM00345 14 72 1.3E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_03975 a5c6b7ed749062ae054d2a90123bd8ca 216 Pfam PF07729 FCD domain 82 197 1.2E-16 T 11-10-2018 IPR011711 GntR, C-terminal APT56_03975 a5c6b7ed749062ae054d2a90123bd8ca 216 SMART SM00895 82 205 2.2E-10 T 11-10-2018 IPR011711 GntR, C-terminal APT56_03975 a5c6b7ed749062ae054d2a90123bd8ca 216 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 72 3.0E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_03975 a5c6b7ed749062ae054d2a90123bd8ca 216 SUPERFAMILY SSF48008 79 207 9.94E-15 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_03975 a5c6b7ed749062ae054d2a90123bd8ca 216 SUPERFAMILY SSF46785 5 76 1.96E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 367 386 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 6 477 3.3E-130 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 Pfam PF04963 Sigma-54 factor, core binding domain 112 307 5.8E-48 T 11-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 PRINTS PR00045 Sigma-54 factor signature 395 406 3.2E-25 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 PRINTS PR00045 Sigma-54 factor signature 453 471 3.2E-25 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 PRINTS PR00045 Sigma-54 factor signature 189 206 3.2E-25 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 PRINTS PR00045 Sigma-54 factor signature 379 391 3.2E-25 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 Gene3D G3DSA:1.10.10.1330 118 241 3.9E-15 T 11-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 Gene3D G3DSA:1.10.10.60 420 477 4.3E-19 T 11-10-2018 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 Pfam PF04552 Sigma-54, DNA binding domain 322 477 5.6E-60 T 11-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 PIRSF PIRSF000774 1 479 1.6E-138 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_14370 20e04de92ac68b04d58ed0a9c5a089d7 479 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 2 46 1.2E-12 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_27310 17bc70e6f2d8775df4e49d86bd0df96e 377 Pfam PF02405 Permease MlaE 161 370 1.0E-66 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 APT56_27310 17bc70e6f2d8775df4e49d86bd0df96e 377 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 160 374 1.2E-66 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 Gene3D G3DSA:3.30.43.10 10 79 2.4E-12 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 SUPERFAMILY SSF56176 17 204 1.14E-37 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 Gene3D G3DSA:3.30.465.10 82 233 1.4E-55 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 Gene3D G3DSA:3.90.78.10 234 344 5.3E-44 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 Pfam PF01565 FAD binding domain 31 162 8.9E-20 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 SUPERFAMILY SSF56194 218 343 3.53E-49 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 21 340 5.8E-67 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 344 83.3 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_05540 d65e61ef472516c5f3ff965b0b6529d2 344 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 221 343 5.2E-37 T 11-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_27845 bad30fc9c804ec9bf704889ca326fab0 229 Gene3D G3DSA:2.40.50.620 42 101 9.0E-13 T 11-10-2018 APT56_27845 bad30fc9c804ec9bf704889ca326fab0 229 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 14 218 3.3E-84 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27845 bad30fc9c804ec9bf704889ca326fab0 229 SUPERFAMILY SSF50447 9 226 1.77E-78 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_27845 bad30fc9c804ec9bf704889ca326fab0 229 ProSitePatterns PS00474 Ribosomal protein L3 signature. 115 138 - T 11-10-2018 IPR019926 Ribosomal protein L3, conserved site APT56_27845 bad30fc9c804ec9bf704889ca326fab0 229 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 12 221 38.32 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27845 bad30fc9c804ec9bf704889ca326fab0 229 Gene3D G3DSA:2.40.30.10 145 224 3.1E-16 T 11-10-2018 APT56_27845 bad30fc9c804ec9bf704889ca326fab0 229 Pfam PF00297 Ribosomal protein L3 78 195 2.0E-18 T 11-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_25625 7da9370f797cd538860ef54b61ca8295 79 Pfam PF12167 Arm DNA-binding domain 6 67 3.2E-16 T 11-10-2018 IPR022000 Min27-like integrase, DNA-binding domain APT56_07650 812f21d42ffa52a7cccaaf3f0922ae83 604 TIGRFAM TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase 28 548 2.8E-226 T 11-10-2018 IPR022518 Aspartate 4-decarboxylase KEGG: 00220+2.6.1.1|KEGG: 00250+4.1.1.12+2.6.1.1|KEGG: 00270+4.1.1.12+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APT56_07650 812f21d42ffa52a7cccaaf3f0922ae83 604 Gene3D G3DSA:1.10.20.110 57 425 1.2E-210 T 11-10-2018 APT56_07650 812f21d42ffa52a7cccaaf3f0922ae83 604 SUPERFAMILY SSF53383 135 527 3.6E-47 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_07650 812f21d42ffa52a7cccaaf3f0922ae83 604 Gene3D G3DSA:3.90.1150.10 51 546 1.2E-210 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_07650 812f21d42ffa52a7cccaaf3f0922ae83 604 Pfam PF00155 Aminotransferase class I and II 204 530 4.2E-25 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_07650 812f21d42ffa52a7cccaaf3f0922ae83 604 Gene3D G3DSA:3.40.640.10 179 403 1.2E-210 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_08115 7b89e224cce55d9f8848d20965c2931f 316 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 1 314 1.1E-116 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 APT56_08115 7b89e224cce55d9f8848d20965c2931f 316 Gene3D G3DSA:3.40.718.10 1 316 5.3E-131 T 11-10-2018 APT56_08115 7b89e224cce55d9f8848d20965c2931f 316 SUPERFAMILY SSF53659 1 315 3.46E-109 T 11-10-2018 APT56_08115 7b89e224cce55d9f8848d20965c2931f 316 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 24 311 2.0E-110 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 APT56_13705 27eff64cdf9c76cbf4291c076b3c4e1b 251 SUPERFAMILY SSF56219 5 249 3.01E-46 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APT56_13705 27eff64cdf9c76cbf4291c076b3c4e1b 251 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 29 242 1.4E-16 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase APT56_13705 27eff64cdf9c76cbf4291c076b3c4e1b 251 Gene3D G3DSA:3.60.10.10 5 251 1.5E-37 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APT56_22465 490998fceccc2d9a99415115729db1a4 326 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 29 277 5.9E-63 T 11-10-2018 APT56_22465 490998fceccc2d9a99415115729db1a4 326 SUPERFAMILY SSF53850 48 241 1.44E-39 T 11-10-2018 APT56_22465 490998fceccc2d9a99415115729db1a4 326 Gene3D G3DSA:3.40.190.10 112 225 3.2E-88 T 11-10-2018 APT56_22465 490998fceccc2d9a99415115729db1a4 326 Gene3D G3DSA:1.20.58.90 276 326 1.5E-12 T 11-10-2018 APT56_22465 490998fceccc2d9a99415115729db1a4 326 Gene3D G3DSA:3.40.190.10 28 254 3.2E-88 T 11-10-2018 APT56_22465 490998fceccc2d9a99415115729db1a4 326 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 290 4.9E-109 T 11-10-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 APT56_22465 490998fceccc2d9a99415115729db1a4 326 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 6 250 9.6E-78 T 11-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 9.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 9.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 9.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 Gene3D G3DSA:1.10.10.10 1 83 7.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 Gene3D G3DSA:3.40.190.10 176 259 1.8E-5 T 11-10-2018 APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 Pfam PF03466 LysR substrate binding domain 88 274 8.0E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 Gene3D G3DSA:3.40.190.10 84 175 9.7E-16 T 11-10-2018 APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 SUPERFAMILY SSF46785 1 110 1.72E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 SUPERFAMILY SSF53850 89 289 5.89E-33 T 11-10-2018 APT56_03215 5777b7909ffd9c5a6d909add37591c9a 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.3E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24980 d34191105e494189a54f981a3adc91e5 247 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 246 2.0E-8 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_24980 d34191105e494189a54f981a3adc91e5 247 Gene3D G3DSA:3.40.50.300 4 247 4.3E-56 T 11-10-2018 APT56_24980 d34191105e494189a54f981a3adc91e5 247 SMART SM00382 32 224 0.0067 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24980 d34191105e494189a54f981a3adc91e5 247 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 7 247 2.1E-113 T 11-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD APT56_24980 d34191105e494189a54f981a3adc91e5 247 SUPERFAMILY SSF52540 7 245 6.61E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24980 d34191105e494189a54f981a3adc91e5 247 Pfam PF00005 ABC transporter 24 177 3.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21790 c36fcc9115e7177579f26b4b8870f0a9 189 SUPERFAMILY SSF88659 125 188 2.8E-13 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_21790 c36fcc9115e7177579f26b4b8870f0a9 189 SUPERFAMILY SSF88946 6 108 4.32E-24 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_21790 c36fcc9115e7177579f26b4b8870f0a9 189 Pfam PF04542 Sigma-70 region 2 29 96 2.2E-20 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_21790 c36fcc9115e7177579f26b4b8870f0a9 189 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 188 4.2E-28 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_21790 c36fcc9115e7177579f26b4b8870f0a9 189 Pfam PF08281 Sigma-70, region 4 137 184 1.4E-13 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_21790 c36fcc9115e7177579f26b4b8870f0a9 189 Gene3D G3DSA:1.10.10.10 99 189 2.8E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21790 c36fcc9115e7177579f26b4b8870f0a9 189 Gene3D G3DSA:1.10.1740.10 10 93 5.2E-27 T 11-10-2018 APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 Pfam PF00005 ABC transporter 279 436 6.1E-13 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 SUPERFAMILY SSF52540 258 494 1.81E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 SMART SM00382 32 219 2.7E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 Gene3D G3DSA:3.40.50.300 244 500 6.3E-36 T 11-10-2018 APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 SUPERFAMILY SSF52540 7 228 4.51E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 Gene3D G3DSA:3.40.50.300 2 240 5.2E-58 T 11-10-2018 APT56_00545 587cd25b44914df17af61bc6ec4f6784 509 Pfam PF00005 ABC transporter 24 172 6.5E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 Gene3D G3DSA:3.30.160.40 224 307 2.4E-25 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 Gene3D G3DSA:3.40.190.10 104 203 4.7E-82 T 11-10-2018 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 213 3.1E-76 T 11-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 PIRSF PIRSF001438 2 312 1.3E-115 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 232 248 - T 11-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 SUPERFAMILY SSF54782 221 310 4.45E-25 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 229 296 7.9E-18 T 11-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 6 298 37.698 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 PRINTS PR00151 Porphobilinogen deaminase signature 231 248 1.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 PRINTS PR00151 Porphobilinogen deaminase signature 77 96 1.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 PRINTS PR00151 Porphobilinogen deaminase signature 125 142 1.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 PRINTS PR00151 Porphobilinogen deaminase signature 46 66 1.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 PRINTS PR00151 Porphobilinogen deaminase signature 144 161 1.3E-43 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 Gene3D G3DSA:3.40.190.10 8 210 4.7E-82 T 11-10-2018 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 SUPERFAMILY SSF53850 6 220 4.34E-80 T 11-10-2018 APT56_08285 f1b5bb888ed38dd62058c82905d3d6ec 314 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 7 297 3.4E-106 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 66 77 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 Gene3D G3DSA:3.30.470.20 88 301 8.6E-75 T 11-10-2018 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 PIRSF PIRSF039102 3 50 4.4E-8 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 PIRSF PIRSF039102 44 314 1.3E-86 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 Gene3D G3DSA:3.40.50.20 1 87 1.2E-30 T 11-10-2018 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 7 305 9.9E-98 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 SMART SM01209 98 273 0.0032 T 11-10-2018 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 SUPERFAMILY SSF56059 99 308 5.22E-59 T 11-10-2018 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 SUPERFAMILY SSF52440 7 99 7.19E-30 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 6 306 35.903 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 Pfam PF01820 D-ala D-ala ligase N-terminus 7 89 1.9E-18 T 11-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 Gene3D G3DSA:3.30.1490.20 114 179 8.6E-75 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_04350 c9f5342ba94a9cb717ce0132b6776434 316 Pfam PF07478 D-ala D-ala ligase C-terminus 109 302 9.8E-57 T 11-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_15115 71e450797db7d686d14fd3821af0ee97 296 Gene3D G3DSA:3.40.50.150 1 288 2.0E-107 T 11-10-2018 APT56_15115 71e450797db7d686d14fd3821af0ee97 296 SUPERFAMILY SSF53335 9 282 8.31E-93 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_15115 71e450797db7d686d14fd3821af0ee97 296 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 272 39.966 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 APT56_15115 71e450797db7d686d14fd3821af0ee97 296 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 281 1.3E-72 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 APT56_25950 31aeda6c7ed9e36e92079af57b3bfb25 260 Gene3D G3DSA:1.10.10.10 2 80 4.3E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25950 31aeda6c7ed9e36e92079af57b3bfb25 260 Gene3D G3DSA:3.30.450.40 81 259 3.9E-59 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_25950 31aeda6c7ed9e36e92079af57b3bfb25 260 SUPERFAMILY SSF55781 78 257 1.08E-51 T 11-10-2018 APT56_25950 31aeda6c7ed9e36e92079af57b3bfb25 260 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 11 257 2.6E-107 T 11-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 APT56_25950 31aeda6c7ed9e36e92079af57b3bfb25 260 SMART SM00346 14 102 1.8E-25 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_25950 31aeda6c7ed9e36e92079af57b3bfb25 260 Pfam PF09339 IclR helix-turn-helix domain 18 64 6.8E-14 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_25950 31aeda6c7ed9e36e92079af57b3bfb25 260 SUPERFAMILY SSF46785 14 85 7.87E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25950 31aeda6c7ed9e36e92079af57b3bfb25 260 Pfam PF01614 Bacterial transcriptional regulator 129 255 1.6E-34 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_11675 01e94e9fb2ac9d687b02511007e1f792 134 SUPERFAMILY SSF54523 20 64 7.69E-6 T 11-10-2018 APT56_11675 01e94e9fb2ac9d687b02511007e1f792 134 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 18 38 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11675 01e94e9fb2ac9d687b02511007e1f792 134 TIGRFAM TIGR01707 gspI: type II secretion system protein I 19 114 3.2E-18 T 11-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 APT56_11675 01e94e9fb2ac9d687b02511007e1f792 134 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 40 6.7E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11675 01e94e9fb2ac9d687b02511007e1f792 134 Pfam PF02501 Type II secretion system (T2SS), protein I 53 130 6.2E-17 T 11-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 APT56_11675 01e94e9fb2ac9d687b02511007e1f792 134 SUPERFAMILY SSF54523 52 126 3.3E-11 T 11-10-2018 APT56_11675 01e94e9fb2ac9d687b02511007e1f792 134 Gene3D G3DSA:3.30.1300.30 47 130 3.2E-10 T 11-10-2018 APT56_11675 01e94e9fb2ac9d687b02511007e1f792 134 Pfam PF07963 Prokaryotic N-terminal methylation motif 15 40 1.3E-11 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 Gene3D G3DSA:3.10.150.10 127 249 1.3E-36 T 11-10-2018 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 7 368 4.5E-92 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 Pfam PF02767 DNA polymerase III beta subunit, central domain 132 245 1.3E-33 T 11-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 SMART SM00480 18 365 3.1E-105 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 SUPERFAMILY SSF55979 6 118 1.59E-21 T 11-10-2018 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 7 120 2.3E-26 T 11-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 SUPERFAMILY SSF55979 127 246 4.85E-29 T 11-10-2018 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 Gene3D G3DSA:3.10.150.10 2 123 9.8E-34 T 11-10-2018 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 PIRSF PIRSF000804 1 369 5.8E-110 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 SUPERFAMILY SSF55979 248 369 1.07E-33 T 11-10-2018 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 Gene3D G3DSA:3.10.150.10 250 369 5.5E-36 T 11-10-2018 APT56_00290 f58c19d5ba9981010a9bc98a0c0fe404 369 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 248 368 5.4E-31 T 11-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 APT56_00820 974984c9ed514c0957a99044cf8db21b 535 Gene3D G3DSA:3.90.226.10 274 535 2.3E-105 T 11-10-2018 APT56_00820 974984c9ed514c0957a99044cf8db21b 535 SUPERFAMILY SSF52096 22 270 2.09E-70 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_00820 974984c9ed514c0957a99044cf8db21b 535 Pfam PF01039 Carboxyl transferase domain 48 525 1.8E-152 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 APT56_00820 974984c9ed514c0957a99044cf8db21b 535 Gene3D G3DSA:3.90.226.10 1 271 2.1E-95 T 11-10-2018 APT56_00820 974984c9ed514c0957a99044cf8db21b 535 SUPERFAMILY SSF52096 237 517 3.25E-88 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_26560 ea3802ea9cce904ad6a9078487260703 623 Pfam PF01841 Transglutaminase-like superfamily 262 369 3.8E-8 T 11-10-2018 IPR002931 Transglutaminase-like APT56_26560 ea3802ea9cce904ad6a9078487260703 623 SUPERFAMILY SSF54001 269 381 1.57E-11 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APT56_26560 ea3802ea9cce904ad6a9078487260703 623 Gene3D G3DSA:3.10.620.30 257 377 6.5E-24 T 11-10-2018 APT56_26560 ea3802ea9cce904ad6a9078487260703 623 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 47 207 7.2E-21 T 11-10-2018 IPR024618 Domain of unknown function DUF3857 APT56_26560 ea3802ea9cce904ad6a9078487260703 623 SMART SM00460 306 374 0.006 T 11-10-2018 IPR002931 Transglutaminase-like APT56_22500 dfb59a94b8756f36d63f7056195859e1 294 Gene3D G3DSA:2.60.40.1590 35 134 2.5E-35 T 11-10-2018 APT56_22500 dfb59a94b8756f36d63f7056195859e1 294 Gene3D G3DSA:2.70.70.10 135 294 3.8E-57 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_22500 dfb59a94b8756f36d63f7056195859e1 294 Pfam PF01551 Peptidase family M23 191 285 3.0E-29 T 11-10-2018 IPR016047 Peptidase M23 APT56_22500 dfb59a94b8756f36d63f7056195859e1 294 SUPERFAMILY SSF51261 152 289 1.1E-49 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 Gene3D G3DSA:3.40.50.720 234 391 8.6E-239 T 11-10-2018 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 SUPERFAMILY SSF51735 232 391 6.91E-79 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 83 97 - T 11-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 12 464 1.5E-184 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 SMART SM00996 11 471 0.0 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 232 391 8.7E-81 T 11-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 SMART SM00997 232 391 2.0E-113 T 11-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 7 464 48.384 T 11-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 Gene3D G3DSA:3.40.50.1480 12 472 8.6E-239 T 11-10-2018 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 11 471 2.1E-144 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 SUPERFAMILY SSF52283 9 472 4.08E-111 T 11-10-2018 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 254 270 - T 11-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT56_27080 b0b495cea7e11ffb2bd06047c1687593 472 PIRSF PIRSF001109 1 472 6.6E-188 T 11-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 APT56_04930 75502273bd49e9531fa3ecf5bd6e0a14 377 SUPERFAMILY SSF51905 5 368 4.32E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_04930 75502273bd49e9531fa3ecf5bd6e0a14 377 Gene3D G3DSA:3.50.50.60 6 361 1.9E-151 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_04930 75502273bd49e9531fa3ecf5bd6e0a14 377 Pfam PF01266 FAD dependent oxidoreductase 6 363 2.8E-65 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_04930 75502273bd49e9531fa3ecf5bd6e0a14 377 Gene3D G3DSA:3.30.9.10 87 322 1.9E-151 T 11-10-2018 APT56_12385 092414ffdbded0e3fec1d86a80e407da 155 Pfam PF01668 SmpB protein 3 146 2.0E-57 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 APT56_12385 092414ffdbded0e3fec1d86a80e407da 155 Gene3D G3DSA:2.40.280.10 1 124 1.5E-46 T 11-10-2018 IPR023620 Small protein B APT56_12385 092414ffdbded0e3fec1d86a80e407da 155 Hamap MF_00023 SsrA-binding protein [smpB]. 1 150 70.967 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 APT56_12385 092414ffdbded0e3fec1d86a80e407da 155 TIGRFAM TIGR00086 smpB: SsrA-binding protein 3 145 7.0E-52 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 APT56_12385 092414ffdbded0e3fec1d86a80e407da 155 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 3 127 3.0E-64 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 APT56_12385 092414ffdbded0e3fec1d86a80e407da 155 ProSitePatterns PS01317 SsrA-binding protein. 21 33 - T 11-10-2018 IPR020081 SsrA-binding protein, conserved site APT56_12385 092414ffdbded0e3fec1d86a80e407da 155 SUPERFAMILY SSF74982 3 127 3.79E-48 T 11-10-2018 IPR023620 Small protein B APT56_08765 01c3a1189b6cfc90fcd49ab6d3bf534f 226 Gene3D G3DSA:2.60.120.620 1 178 2.5E-43 T 11-10-2018 APT56_08765 01c3a1189b6cfc90fcd49ab6d3bf534f 226 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 176 1.1E-13 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 APT56_08765 01c3a1189b6cfc90fcd49ab6d3bf534f 226 Gene3D G3DSA:4.10.860.20 180 226 5.0E-20 T 11-10-2018 APT56_08765 01c3a1189b6cfc90fcd49ab6d3bf534f 226 SMART SM00702 1 177 2.2E-28 T 11-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 APT56_08765 01c3a1189b6cfc90fcd49ab6d3bf534f 226 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 226 46.455 T 11-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 APT56_13460 3dfa7a4a725b79b7c7aad5b1a08f58c3 227 SUPERFAMILY SSF52172 1 123 2.56E-39 T 11-10-2018 IPR011006 CheY-like superfamily APT56_13460 3dfa7a4a725b79b7c7aad5b1a08f58c3 227 SMART SM00862 147 221 8.2E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_13460 3dfa7a4a725b79b7c7aad5b1a08f58c3 227 SMART SM00448 1 113 1.5E-42 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_13460 3dfa7a4a725b79b7c7aad5b1a08f58c3 227 SUPERFAMILY SSF46894 125 222 1.19E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_13460 3dfa7a4a725b79b7c7aad5b1a08f58c3 227 Gene3D G3DSA:3.40.50.2300 1 121 2.7E-37 T 11-10-2018 APT56_13460 3dfa7a4a725b79b7c7aad5b1a08f58c3 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 7.2E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_13460 3dfa7a4a725b79b7c7aad5b1a08f58c3 227 Gene3D G3DSA:1.10.10.10 122 225 1.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13460 3dfa7a4a725b79b7c7aad5b1a08f58c3 227 Pfam PF00072 Response regulator receiver domain 3 113 1.5E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20455 cf8325fb6d5f7d65eccfbe9328cb275a 208 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 35 125 2.1E-16 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT56_20455 cf8325fb6d5f7d65eccfbe9328cb275a 208 Gene3D G3DSA:2.30.110.10 34 162 8.4E-25 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_20455 cf8325fb6d5f7d65eccfbe9328cb275a 208 SUPERFAMILY SSF50475 33 176 2.75E-23 T 11-10-2018 APT56_20455 cf8325fb6d5f7d65eccfbe9328cb275a 208 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 14 208 3.8E-83 T 11-10-2018 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 SUPERFAMILY SSF48295 382 485 3.14E-36 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 SUPERFAMILY SSF52540 150 361 3.17E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 Gene3D G3DSA:3.40.50.300 148 315 7.4E-48 T 11-10-2018 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 Pfam PF00308 Bacterial dnaA protein 150 367 4.4E-86 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 2 485 31.655 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 Gene3D G3DSA:1.10.1750.10 388 485 6.9E-35 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 5 484 1.3E-164 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 Gene3D G3DSA:1.10.8.60 316 387 4.9E-21 T 11-10-2018 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 SMART SM00760 394 463 3.0E-43 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 395 463 2.3E-31 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 Gene3D G3DSA:3.30.300.180 2 107 4.1E-23 T 11-10-2018 IPR038454 DnaA, N-terminal domain superfamily APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 SMART SM00382 182 316 2.5E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 215 229 3.3E-49 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 444 463 3.3E-49 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 247 261 3.3E-49 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 183 203 3.3E-49 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 281 308 3.3E-49 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 ProSitePatterns PS01008 DnaA protein signature. 444 463 - T 11-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APT56_00285 eef9b86f8bb37c99732da302c0bceb08 486 Pfam PF11638 DnaA N-terminal domain 3 66 5.8E-18 T 11-10-2018 IPR024633 DnaA N-terminal domain APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 Pfam PF00072 Response regulator receiver domain 4 116 2.9E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 SMART SM00421 146 203 7.0E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 7.1E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 SMART SM00448 2 115 7.8E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 SUPERFAMILY SSF52172 1 131 2.99E-37 T 11-10-2018 IPR011006 CheY-like superfamily APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 Gene3D G3DSA:3.40.50.12740 2 209 3.0E-64 T 11-10-2018 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 SUPERFAMILY SSF46894 140 210 6.12E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.8E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.8E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.8E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13815 6cae4e9dfe8f86a8aed3b0ac5162e7f3 217 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_05830 a8fe98dc96afbb32951b0df595046afe 291 Pfam PF03466 LysR substrate binding domain 86 288 4.6E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_05830 a8fe98dc96afbb32951b0df595046afe 291 SUPERFAMILY SSF46785 1 109 2.72E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05830 a8fe98dc96afbb32951b0df595046afe 291 SUPERFAMILY SSF53850 88 290 1.69E-35 T 11-10-2018 APT56_05830 a8fe98dc96afbb32951b0df595046afe 291 Gene3D G3DSA:1.10.10.10 1 85 1.0E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05830 a8fe98dc96afbb32951b0df595046afe 291 Gene3D G3DSA:3.40.190.290 90 291 9.1E-34 T 11-10-2018 APT56_05830 a8fe98dc96afbb32951b0df595046afe 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 1.2E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15970 5a44a5a59711c4438555399e6e20d3bc 317 SUPERFAMILY SSF103481 42 140 1.83E-5 T 11-10-2018 APT56_15970 5a44a5a59711c4438555399e6e20d3bc 317 SUPERFAMILY SSF103481 226 309 9.55E-5 T 11-10-2018 APT56_15970 5a44a5a59711c4438555399e6e20d3bc 317 Pfam PF00892 EamA-like transporter family 3 112 5.7E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_16860 14c2df82f0780a501c2888b87497ac34 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 8.4E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16860 14c2df82f0780a501c2888b87497ac34 299 Pfam PF03466 LysR substrate binding domain 89 293 1.7E-54 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16860 14c2df82f0780a501c2888b87497ac34 299 Gene3D G3DSA:3.40.190.10 93 281 8.4E-57 T 11-10-2018 APT56_16860 14c2df82f0780a501c2888b87497ac34 299 Gene3D G3DSA:3.40.190.10 166 268 8.4E-57 T 11-10-2018 APT56_16860 14c2df82f0780a501c2888b87497ac34 299 SUPERFAMILY SSF53850 91 295 1.14E-54 T 11-10-2018 APT56_16860 14c2df82f0780a501c2888b87497ac34 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 8.7E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16860 14c2df82f0780a501c2888b87497ac34 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 8.7E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16860 14c2df82f0780a501c2888b87497ac34 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 8.7E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16860 14c2df82f0780a501c2888b87497ac34 299 Gene3D G3DSA:1.10.10.10 3 91 1.4E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16860 14c2df82f0780a501c2888b87497ac34 299 SUPERFAMILY SSF46785 2 113 1.29E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11350 56a214c298c8b202150599b319c27d32 336 SUPERFAMILY SSF53850 101 309 3.57E-26 T 11-10-2018 APT56_11350 56a214c298c8b202150599b319c27d32 336 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 71 1.4E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11350 56a214c298c8b202150599b319c27d32 336 Gene3D G3DSA:1.10.10.10 10 100 1.4E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11350 56a214c298c8b202150599b319c27d32 336 Gene3D G3DSA:3.40.190.10 111 300 3.3E-34 T 11-10-2018 APT56_11350 56a214c298c8b202150599b319c27d32 336 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 4.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11350 56a214c298c8b202150599b319c27d32 336 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 4.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11350 56a214c298c8b202150599b319c27d32 336 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 4.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11350 56a214c298c8b202150599b319c27d32 336 Pfam PF03466 LysR substrate binding domain 99 307 6.2E-24 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11350 56a214c298c8b202150599b319c27d32 336 Gene3D G3DSA:3.40.190.10 175 276 3.3E-34 T 11-10-2018 APT56_11350 56a214c298c8b202150599b319c27d32 336 SUPERFAMILY SSF46785 7 90 9.08E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 Hamap MF_00318 Enolase [eno]. 1 410 40.979 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 SUPERFAMILY SSF51604 138 421 5.23E-114 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 Gene3D G3DSA:3.30.390.10 1 125 1.8E-47 T 11-10-2018 IPR029017 Enolase-like, N-terminal APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 Pfam PF03952 Enolase, N-terminal domain 3 133 2.4E-51 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 PRINTS PR00148 Enolase signature 36 50 2.9E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 PRINTS PR00148 Enolase signature 333 347 2.9E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 PRINTS PR00148 Enolase signature 362 379 2.9E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 PRINTS PR00148 Enolase signature 106 122 2.9E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 PRINTS PR00148 Enolase signature 160 173 2.9E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 PRINTS PR00148 Enolase signature 310 321 2.9E-43 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 SMART SM01193 3 133 5.6E-81 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 PIRSF PIRSF001400 1 423 2.2E-169 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 SMART SM01192 138 424 1.1E-187 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 3 421 3.4E-184 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 ProSitePatterns PS00164 Enolase signature. 333 346 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 Pfam PF00113 Enolase, C-terminal TIM barrel domain 139 421 1.7E-109 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 Gene3D G3DSA:3.20.20.120 127 425 9.1E-119 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_16285 469547bad5493905ff72e6ea6d86a44e 426 SUPERFAMILY SSF54826 3 136 2.69E-49 T 11-10-2018 APT56_01700 2185039eec90772d5c815779e2fcf611 159 Pfam PF05229 Spore Coat Protein U domain 18 156 8.6E-30 T 11-10-2018 IPR007893 Spore coat protein U APT56_01700 2185039eec90772d5c815779e2fcf611 159 SMART SM00972 97 156 5.3E-12 T 11-10-2018 IPR007893 Spore coat protein U APT56_12230 a984eacde56618956a690f0e42e2300c 868 PIRSF PIRSF006288 1 866 0.0 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 APT56_12230 a984eacde56618956a690f0e42e2300c 868 Pfam PF01909 Nucleotidyltransferase domain 48 116 5.3E-6 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APT56_12230 a984eacde56618956a690f0e42e2300c 868 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 868 309.289 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 APT56_12230 a984eacde56618956a690f0e42e2300c 868 SUPERFAMILY SSF81301 37 154 3.27E-23 T 11-10-2018 APT56_12230 a984eacde56618956a690f0e42e2300c 868 Pfam PF01842 ACT domain 793 837 7.3E-7 T 11-10-2018 IPR002912 ACT domain APT56_12230 a984eacde56618956a690f0e42e2300c 868 SUPERFAMILY SSF81593 169 290 1.73E-8 T 11-10-2018 APT56_12230 a984eacde56618956a690f0e42e2300c 868 Gene3D G3DSA:3.30.70.260 788 865 8.5E-8 T 11-10-2018 APT56_12230 a984eacde56618956a690f0e42e2300c 868 Pfam PF08335 GlnD PII-uridylyltransferase 162 300 1.7E-30 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 APT56_12230 a984eacde56618956a690f0e42e2300c 868 SUPERFAMILY SSF109604 406 528 1.2E-15 T 11-10-2018 APT56_12230 a984eacde56618956a690f0e42e2300c 868 SUPERFAMILY SSF55021 672 729 5.83E-7 T 11-10-2018 APT56_12230 a984eacde56618956a690f0e42e2300c 868 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 21 858 2.6E-229 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 APT56_12230 a984eacde56618956a690f0e42e2300c 868 Gene3D G3DSA:1.10.3210.10 421 552 2.3E-10 T 11-10-2018 APT56_12230 a984eacde56618956a690f0e42e2300c 868 Pfam PF01966 HD domain 438 536 4.0E-8 T 11-10-2018 IPR006674 HD domain APT56_12230 a984eacde56618956a690f0e42e2300c 868 SUPERFAMILY SSF55021 789 859 1.37E-10 T 11-10-2018 APT56_12230 a984eacde56618956a690f0e42e2300c 868 SMART SM00471 433 580 5.4E-7 T 11-10-2018 IPR003607 HD/PDEase domain APT56_11050 d5e09c4a214f8bce1c6f2734fb54fcf7 406 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 23 194 8.5E-69 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal APT56_11050 d5e09c4a214f8bce1c6f2734fb54fcf7 406 TIGRFAM TIGR02162 torC: trimethylamine-N-oxide reductase c-type cytochrome TorC 19 399 3.8E-154 T 11-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 APT56_11050 d5e09c4a214f8bce1c6f2734fb54fcf7 406 SUPERFAMILY SSF48695 19 196 2.41E-52 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily APT56_11050 d5e09c4a214f8bce1c6f2734fb54fcf7 406 PIRSF PIRSF000014 9 401 2.2E-138 T 11-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 APT56_11050 d5e09c4a214f8bce1c6f2734fb54fcf7 406 Gene3D G3DSA:1.10.3820.10 23 200 3.2E-37 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily APT56_10660 cef9aaee0a5357a182cb69c4fab0382b 415 SUPERFAMILY SSF51905 1 414 2.46E-45 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10660 cef9aaee0a5357a182cb69c4fab0382b 415 Gene3D G3DSA:3.30.9.10 134 360 3.5E-42 T 11-10-2018 APT56_10660 cef9aaee0a5357a182cb69c4fab0382b 415 Gene3D G3DSA:3.50.50.60 105 398 3.5E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10660 cef9aaee0a5357a182cb69c4fab0382b 415 Gene3D G3DSA:3.50.50.60 3 51 4.8E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10660 cef9aaee0a5357a182cb69c4fab0382b 415 SUPERFAMILY SSF54373 271 361 2.49E-11 T 11-10-2018 APT56_10660 cef9aaee0a5357a182cb69c4fab0382b 415 Pfam PF01266 FAD dependent oxidoreductase 2 399 6.6E-61 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_19945 7ef1b160b38f1138e062b8a57b2489c7 317 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 5 307 47.999 T 11-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 APT56_19945 7ef1b160b38f1138e062b8a57b2489c7 317 Gene3D G3DSA:3.40.50.720 8 296 4.9E-105 T 11-10-2018 APT56_19945 7ef1b160b38f1138e062b8a57b2489c7 317 Gene3D G3DSA:3.90.25.10 170 300 4.9E-105 T 11-10-2018 APT56_19945 7ef1b160b38f1138e062b8a57b2489c7 317 SUPERFAMILY SSF51735 3 308 6.2E-78 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19945 7ef1b160b38f1138e062b8a57b2489c7 317 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 239 4.7E-79 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_09050 bcc933423261d39e1e06fc56a13835f0 577 SUPERFAMILY SSF161098 63 256 2.62E-20 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09050 bcc933423261d39e1e06fc56a13835f0 577 Gene3D G3DSA:1.10.3720.10 373 569 4.1E-18 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09050 bcc933423261d39e1e06fc56a13835f0 577 Gene3D G3DSA:1.10.3720.10 62 265 7.4E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09050 bcc933423261d39e1e06fc56a13835f0 577 SUPERFAMILY SSF161098 375 564 4.71E-19 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09050 bcc933423261d39e1e06fc56a13835f0 577 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 252 9.8E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_09050 bcc933423261d39e1e06fc56a13835f0 577 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 393 561 4.8E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_14865 e5d4a5a2ee59b726539b2da5fc57b404 244 SUPERFAMILY SSF55666 160 243 7.85E-24 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_14865 e5d4a5a2ee59b726539b2da5fc57b404 244 Pfam PF03725 3' exoribonuclease family, domain 2 165 230 4.9E-12 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_14865 e5d4a5a2ee59b726539b2da5fc57b404 244 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 9 243 5.1E-114 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 APT56_14865 e5d4a5a2ee59b726539b2da5fc57b404 244 ProSitePatterns PS01277 Ribonuclease PH signature. 123 135 - T 11-10-2018 IPR018336 Ribonuclease PH, conserved site APT56_14865 e5d4a5a2ee59b726539b2da5fc57b404 244 Pfam PF01138 3' exoribonuclease family, domain 1 17 147 1.4E-19 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_14865 e5d4a5a2ee59b726539b2da5fc57b404 244 SUPERFAMILY SSF54211 9 188 6.07E-45 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_14865 e5d4a5a2ee59b726539b2da5fc57b404 244 Gene3D G3DSA:3.30.230.70 16 244 2.4E-59 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APT56_14865 e5d4a5a2ee59b726539b2da5fc57b404 244 Hamap MF_00564 Ribonuclease PH [rph]. 18 244 44.971 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 APT56_14215 902a707234e89c3eb878098a32cbde8c 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 264 7.0E-46 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_14215 902a707234e89c3eb878098a32cbde8c 264 SUPERFAMILY SSF52096 13 263 4.68E-75 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_14215 902a707234e89c3eb878098a32cbde8c 264 Gene3D G3DSA:3.90.226.10 10 207 1.1E-60 T 11-10-2018 APT56_14215 902a707234e89c3eb878098a32cbde8c 264 Gene3D G3DSA:1.10.12.10 209 264 2.8E-22 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_11990 cd6620289ae776f4a1c0ad2817022760 231 Pfam PF13861 FlgD Tudor-like domain 85 227 2.2E-14 T 11-10-2018 IPR025963 FlgD Tudor-like domain APT56_11990 cd6620289ae776f4a1c0ad2817022760 231 Gene3D G3DSA:2.60.40.4070 102 196 4.4E-32 T 11-10-2018 APT56_11990 cd6620289ae776f4a1c0ad2817022760 231 Pfam PF13860 FlgD Ig-like domain 120 186 4.0E-22 T 11-10-2018 IPR025965 FlgD Ig-like domain APT56_11990 cd6620289ae776f4a1c0ad2817022760 231 Pfam PF03963 Flagellar hook capping protein - N-terminal region 19 75 2.0E-21 T 11-10-2018 IPR005648 Flagellar hook capping protein APT56_11990 cd6620289ae776f4a1c0ad2817022760 231 Gene3D G3DSA:2.30.30.910 86 223 4.4E-32 T 11-10-2018 APT56_08435 f30c57a9fb5ce55ff150d05350f54a32 499 Gene3D G3DSA:3.30.70.2740 351 431 1.5E-7 T 11-10-2018 APT56_08435 f30c57a9fb5ce55ff150d05350f54a32 499 SUPERFAMILY SSF56176 19 231 4.67E-69 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_08435 f30c57a9fb5ce55ff150d05350f54a32 499 SUPERFAMILY SSF55103 205 474 9.97E-74 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_08435 f30c57a9fb5ce55ff150d05350f54a32 499 Pfam PF02913 FAD linked oxidases, C-terminal domain 231 471 1.5E-66 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_08435 f30c57a9fb5ce55ff150d05350f54a32 499 Pfam PF01565 FAD binding domain 56 195 4.1E-40 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_08435 f30c57a9fb5ce55ff150d05350f54a32 499 Gene3D G3DSA:1.10.45.10 432 472 7.5E-6 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT56_08435 f30c57a9fb5ce55ff150d05350f54a32 499 Gene3D G3DSA:3.30.465.40 20 250 1.3E-62 T 11-10-2018 APT56_05110 573775c20fbb7747b8d650d5e22b6d4d 163 Gene3D G3DSA:3.10.450.50 4 163 7.1E-42 T 11-10-2018 APT56_05110 573775c20fbb7747b8d650d5e22b6d4d 163 Pfam PF00866 Ring hydroxylating beta subunit 15 151 2.3E-26 T 11-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 APT56_05110 573775c20fbb7747b8d650d5e22b6d4d 163 SUPERFAMILY SSF54427 7 163 9.57E-42 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_03570 ab341405011faf13f94f3590427925dd 419 SUPERFAMILY SSF53300 248 356 1.56E-6 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily APT56_03570 ab341405011faf13f94f3590427925dd 419 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 419 34.585 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 APT56_03570 ab341405011faf13f94f3590427925dd 419 Pfam PF04285 Protein of unknown function (DUF444) 4 417 8.7E-167 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 179 20.055 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 177 3.1E-50 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 SUPERFAMILY SSF47928 3 107 9.94E-24 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 PRINTS PR00125 ATP synthase delta subunit signature 137 152 1.5E-22 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 PRINTS PR00125 ATP synthase delta subunit signature 76 87 1.5E-22 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 PRINTS PR00125 ATP synthase delta subunit signature 152 170 1.5E-22 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.5E-22 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 PRINTS PR00125 ATP synthase delta subunit signature 87 101 1.5E-22 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 177 8.2E-41 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02165 498a72edc385de1a4f123441ff7299c1 179 Gene3D G3DSA:1.10.520.20 2 108 1.1E-27 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_26650 00d95f24db1d7e2f7d78cc0e4882a2ac 214 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 50 193 2.6E-27 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 APT56_26650 00d95f24db1d7e2f7d78cc0e4882a2ac 214 Gene3D G3DSA:2.60.450.10 46 198 1.9E-31 T 11-10-2018 APT56_26650 00d95f24db1d7e2f7d78cc0e4882a2ac 214 Pfam PF03968 OstA-like protein 53 170 2.0E-23 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal APT56_26650 00d95f24db1d7e2f7d78cc0e4882a2ac 214 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 8 194 21.948 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 SUPERFAMILY SSF55021 257 335 6.65E-17 T 11-10-2018 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 Gene3D G3DSA:3.30.70.260 270 348 1.4E-54 T 11-10-2018 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 Gene3D G3DSA:3.40.1160.10 1 263 2.4E-86 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 PIRSF PIRSF000726 58 420 1.4E-132 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 PIRSF PIRSF000726 1 62 2.2E-20 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 Gene3D G3DSA:3.30.70.260 264 413 1.4E-54 T 11-10-2018 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 Pfam PF13840 ACT domain 346 409 1.3E-12 T 11-10-2018 IPR027795 CASTOR, ACT domain APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 Pfam PF01842 ACT domain 276 333 9.5E-9 T 11-10-2018 IPR002912 ACT domain APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 412 1.3E-122 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 1.2E-5 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 1.2E-5 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 412 5.7E-109 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 Pfam PF00696 Amino acid kinase family 3 229 3.4E-48 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 SUPERFAMILY SSF55021 340 414 2.55E-22 T 11-10-2018 APT56_20235 e945ab7426fdd10be38214957e4b8e0c 421 SUPERFAMILY SSF53633 4 250 3.01E-73 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01181 Diaminopimelate decarboxylase signature 376 398 1.6E-25 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01181 Diaminopimelate decarboxylase signature 60 77 1.6E-25 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01181 Diaminopimelate decarboxylase signature 284 302 1.6E-25 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01181 Diaminopimelate decarboxylase signature 148 157 1.6E-25 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 39 266 4.1E-53 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 SUPERFAMILY SSF51419 16 268 2.22E-61 T 11-10-2018 IPR029066 PLP-binding barrel APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 173 186 6.7E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 366 379 6.7E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 62 74 6.7E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 42 60 6.7E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 256 275 6.7E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 Gene3D G3DSA:3.20.20.10 24 270 2.2E-141 T 11-10-2018 IPR029066 PLP-binding barrel APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 20 366 1.4E-23 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 204 220 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 408 2.7E-123 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 42 60 - T 11-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 Gene3D G3DSA:2.40.37.10 13 406 2.2E-141 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 5 409 38.415 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_18305 e26e1b8f37c200aea47a76f1a8cfc78f 409 SUPERFAMILY SSF50621 240 408 3.77E-54 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 155 3.3E-11 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 Gene3D G3DSA:1.20.140.10 294 458 2.6E-49 T 11-10-2018 APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 490 595 1.0E-23 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 SUPERFAMILY SSF56645 37 267 1.96E-53 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 Gene3D G3DSA:1.10.540.10 26 158 1.4E-12 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 266 1.9E-16 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 Gene3D G3DSA:2.40.110.10 159 293 1.5E-25 T 11-10-2018 APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 SUPERFAMILY SSF47203 286 462 2.74E-45 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 33 9.6E-9 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria APT56_07660 0d581c3a5ebc5c196dfef31503f4c40d 608 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 288 454 6.8E-27 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_25980 1c7bca4ed147cc06e2642b7b6255d8bd 346 SUPERFAMILY SSF102198 95 345 5.62E-14 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_25980 1c7bca4ed147cc06e2642b7b6255d8bd 346 Pfam PF04199 Putative cyclase 89 274 6.6E-16 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_26825 1d3f8e70d0b3bff0cc89b6410b5b03ef 299 Gene3D G3DSA:1.10.10.10 1 84 9.1E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26825 1d3f8e70d0b3bff0cc89b6410b5b03ef 299 Pfam PF03466 LysR substrate binding domain 94 291 1.6E-12 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_26825 1d3f8e70d0b3bff0cc89b6410b5b03ef 299 Gene3D G3DSA:3.40.190.290 89 297 3.1E-74 T 11-10-2018 APT56_26825 1d3f8e70d0b3bff0cc89b6410b5b03ef 299 SUPERFAMILY SSF46785 3 109 1.59E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26825 1d3f8e70d0b3bff0cc89b6410b5b03ef 299 SUPERFAMILY SSF53850 91 293 5.07E-20 T 11-10-2018 APT56_26825 1d3f8e70d0b3bff0cc89b6410b5b03ef 299 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 3 294 3.3E-116 T 11-10-2018 IPR017685 HTH-type transcriptional regulator ArgP APT56_26825 1d3f8e70d0b3bff0cc89b6410b5b03ef 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 8.1E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01155 adaf97935e3a6f042d74bd4a3afa31fb 258 SUPERFAMILY SSF102705 8 257 3.01E-70 T 11-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily APT56_01155 adaf97935e3a6f042d74bd4a3afa31fb 258 Gene3D G3DSA:3.40.1390.30 100 229 2.1E-73 T 11-10-2018 APT56_01155 adaf97935e3a6f042d74bd4a3afa31fb 258 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 10 245 1.9E-49 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 APT56_01155 adaf97935e3a6f042d74bd4a3afa31fb 258 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 10 257 6.6E-52 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 APT56_01155 adaf97935e3a6f042d74bd4a3afa31fb 258 Gene3D G3DSA:3.40.1390.30 10 246 2.1E-73 T 11-10-2018 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 9.9E-31 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 9.9E-31 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 9.9E-31 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 9.9E-31 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 Gene3D G3DSA:1.10.285.10 384 448 1.8E-10 T 11-10-2018 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 PIRSF PIRSF000185 22 448 1.2E-114 T 11-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 Gene3D G3DSA:3.40.50.720 209 373 2.0E-168 T 11-10-2018 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 1.9E-49 T 11-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 Gene3D G3DSA:1.10.285.10 8 383 2.0E-168 T 11-10-2018 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 SUPERFAMILY SSF51735 202 448 9.88E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 SMART SM00839 204 446 7.8E-97 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 Gene3D G3DSA:3.40.50.10860 55 190 2.0E-168 T 11-10-2018 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 11-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 SUPERFAMILY SSF53223 7 196 9.6E-73 T 11-10-2018 APT56_26815 a7b23757c6a2e160d5c7f02b4ce63b35 448 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 446 2.5E-87 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_12690 936a039d96e6ad26a899f66594dd1501 283 Gene3D G3DSA:3.40.190.10 97 260 6.3E-38 T 11-10-2018 APT56_12690 936a039d96e6ad26a899f66594dd1501 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.8E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_12690 936a039d96e6ad26a899f66594dd1501 283 Pfam PF03466 LysR substrate binding domain 90 281 1.3E-18 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_12690 936a039d96e6ad26a899f66594dd1501 283 Gene3D G3DSA:3.40.190.10 164 254 6.3E-38 T 11-10-2018 APT56_12690 936a039d96e6ad26a899f66594dd1501 283 SUPERFAMILY SSF53850 91 282 1.35E-21 T 11-10-2018 APT56_12690 936a039d96e6ad26a899f66594dd1501 283 SUPERFAMILY SSF46785 4 112 1.21E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12690 936a039d96e6ad26a899f66594dd1501 283 Gene3D G3DSA:1.10.10.10 1 85 1.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22410 af9116c77ca9fbda28bd5237b0a73ac2 205 PIRSF PIRSF020680 9 205 2.3E-65 T 11-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 APT56_22410 af9116c77ca9fbda28bd5237b0a73ac2 205 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 17 204 3.0E-62 T 11-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 APT56_22410 af9116c77ca9fbda28bd5237b0a73ac2 205 Gene3D G3DSA:3.40.50.11310 14 205 1.9E-58 T 11-10-2018 IPR038058 PhnH-like superfamily APT56_22410 af9116c77ca9fbda28bd5237b0a73ac2 205 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 18 202 9.9E-55 T 11-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 APT56_22410 af9116c77ca9fbda28bd5237b0a73ac2 205 SUPERFAMILY SSF159709 25 204 1.44E-56 T 11-10-2018 IPR038058 PhnH-like superfamily APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SUPERFAMILY SSF52540 358 471 4.19E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Gene3D G3DSA:3.40.50.300 551 790 5.3E-231 T 11-10-2018 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Pfam PF00270 DEAD/DEAH box helicase 614 771 5.3E-17 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SUPERFAMILY SSF141259 480 557 7.72E-23 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 162 1090 0.0 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Gene3D G3DSA:3.40.50.11140 360 459 4.3E-12 T 11-10-2018 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SUPERFAMILY SSF52540 28 352 3.54E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Pfam PF02559 CarD-like/TRCF domain 489 584 6.9E-26 T 11-10-2018 IPR003711 CarD-like/TRCF domain APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SMART SM00487 609 799 9.8E-33 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SUPERFAMILY SSF52540 792 999 3.59E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SUPERFAMILY SSF52540 532 792 3.6E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Gene3D G3DSA:2.30.30.840 492 550 5.3E-231 T 11-10-2018 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SMART SM01058 488 585 4.1E-46 T 11-10-2018 IPR003711 CarD-like/TRCF domain APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Pfam PF03461 TRCF domain 1018 1111 1.5E-26 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 48 1121 27.295 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SMART SM00490 835 919 2.3E-17 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SUPERFAMILY SSF143517 1003 1153 1.57E-38 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Gene3D G3DSA:3.90.1150.50 1014 1154 2.5E-39 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Gene3D G3DSA:3.30.2060.10 142 227 5.3E-109 T 11-10-2018 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 SMART SM00982 1017 1117 1.9E-48 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Gene3D G3DSA:3.40.50.11180 37 347 5.3E-109 T 11-10-2018 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Gene3D G3DSA:3.40.50.300 487 998 5.3E-231 T 11-10-2018 APT56_06475 9f9ab731fef2d3140d0559cc9b8ea956 1154 Pfam PF00271 Helicase conserved C-terminal domain 814 918 3.9E-17 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 Pfam PF12626 Polymerase A arginine-rich C-terminus 319 444 9.6E-41 T 11-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 Pfam PF01743 Poly A polymerase head domain 54 179 1.6E-36 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 Gene3D G3DSA:1.10.3090.10 178 422 1.6E-84 T 11-10-2018 APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 208 266 5.6E-19 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 SUPERFAMILY SSF81891 178 410 3.01E-52 T 11-10-2018 APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 Gene3D G3DSA:3.30.460.10 23 175 4.0E-59 T 11-10-2018 APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 SUPERFAMILY SSF81301 29 176 1.01E-41 T 11-10-2018 APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 26 447 1.6E-156 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 APT56_04825 a16756176e026eab4bc09d1c37cfa2cb 461 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 18 445 37.142 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Gene3D G3DSA:3.30.1480.10 1 128 1.6E-41 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 SUPERFAMILY SSF54814 281 344 2.42E-14 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 SUPERFAMILY SSF50249 135 201 4.6E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Pfam PF08529 NusA N-terminal domain 4 127 3.7E-37 T 11-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Gene3D G3DSA:3.30.300.20 280 347 2.5E-25 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Gene3D G3DSA:1.10.150.20 430 488 3.0E-22 T 11-10-2018 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 343 9.2E-122 T 11-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Gene3D G3DSA:2.40.50.140 129 200 1.6E-19 T 11-10-2018 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Pfam PF00575 S1 RNA binding domain 138 194 1.8E-5 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 SUPERFAMILY SSF47794 428 489 9.89E-15 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Pfam PF13184 NusA-like KH domain 232 299 6.7E-25 T 11-10-2018 IPR025249 KH domain, NusA-like GO:0003723 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 412 28.795 T 11-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 SUPERFAMILY SSF47794 359 418 6.91E-16 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 367 416 3.6E-18 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 442 488 4.2E-15 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Gene3D G3DSA:1.10.150.20 356 423 1.4E-28 T 11-10-2018 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 SUPERFAMILY SSF54814 202 280 2.03E-28 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 SMART SM00316 136 202 2.7E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Gene3D G3DSA:3.30.300.20 201 279 2.1E-30 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 Pfam PF14520 Helix-hairpin-helix domain 431 485 1.0E-9 T 11-10-2018 APT56_07905 b525a0af6cc36b47ee403f19a0e395d6 492 SUPERFAMILY SSF69705 1 129 4.32E-39 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 APT56_06370 a58f652c4b4906c35c46b5f5b3a4e7c7 144 SUPERFAMILY SSF51735 4 127 4.12E-15 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_06370 a58f652c4b4906c35c46b5f5b3a4e7c7 144 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 123 9.8E-10 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 APT56_06370 a58f652c4b4906c35c46b5f5b3a4e7c7 144 Gene3D G3DSA:3.40.50.720 1 137 7.5E-21 T 11-10-2018 APT56_03100 36adbed973af12f1bd43ed4673d897c9 395 SUPERFAMILY SSF53822 32 390 7.57E-85 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_03100 36adbed973af12f1bd43ed4673d897c9 395 Pfam PF13458 Periplasmic binding protein 31 367 8.4E-72 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_03100 36adbed973af12f1bd43ed4673d897c9 395 Gene3D G3DSA:3.40.50.2300 32 357 7.1E-96 T 11-10-2018 APT56_03100 36adbed973af12f1bd43ed4673d897c9 395 Gene3D G3DSA:3.40.50.2300 149 367 7.1E-96 T 11-10-2018 APT56_24205 f7649a84bf8381549d8a867544224ad5 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.6E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24205 f7649a84bf8381549d8a867544224ad5 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 4.6E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24205 f7649a84bf8381549d8a867544224ad5 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.6E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24205 f7649a84bf8381549d8a867544224ad5 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 4.6E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24205 f7649a84bf8381549d8a867544224ad5 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 4.6E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24205 f7649a84bf8381549d8a867544224ad5 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 8.3E-4 T 11-10-2018 APT56_24205 f7649a84bf8381549d8a867544224ad5 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_24205 f7649a84bf8381549d8a867544224ad5 249 SUPERFAMILY SSF51735 6 246 3.8E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_24205 f7649a84bf8381549d8a867544224ad5 249 Gene3D G3DSA:3.40.50.720 1 248 6.8E-77 T 11-10-2018 APT56_24205 f7649a84bf8381549d8a867544224ad5 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 246 5.6E-61 T 11-10-2018 APT56_24205 f7649a84bf8381549d8a867544224ad5 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.9E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24205 f7649a84bf8381549d8a867544224ad5 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.9E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00075 ff52ff89e313066b078d772cdf0c64ca 463 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 230 237 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_00075 ff52ff89e313066b078d772cdf0c64ca 463 Gene3D G3DSA:3.40.309.10 234 426 1.6E-142 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_00075 ff52ff89e313066b078d772cdf0c64ca 463 Pfam PF00171 Aldehyde dehydrogenase family 5 456 3.9E-130 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_00075 ff52ff89e313066b078d772cdf0c64ca 463 SUPERFAMILY SSF53720 6 460 1.44E-133 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_00075 ff52ff89e313066b078d772cdf0c64ca 463 Gene3D G3DSA:3.40.605.10 7 455 1.6E-142 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_17380 0b61f553102e8651f14546cdeb145484 291 Gene3D G3DSA:3.40.190.10 162 258 8.9E-44 T 11-10-2018 APT56_17380 0b61f553102e8651f14546cdeb145484 291 Pfam PF03466 LysR substrate binding domain 91 285 1.3E-31 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_17380 0b61f553102e8651f14546cdeb145484 291 SUPERFAMILY SSF46785 3 84 1.61E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17380 0b61f553102e8651f14546cdeb145484 291 Gene3D G3DSA:3.40.190.10 102 282 8.9E-44 T 11-10-2018 APT56_17380 0b61f553102e8651f14546cdeb145484 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 4.2E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17380 0b61f553102e8651f14546cdeb145484 291 SUPERFAMILY SSF53850 93 288 8.14E-32 T 11-10-2018 APT56_17380 0b61f553102e8651f14546cdeb145484 291 Gene3D G3DSA:1.10.10.10 6 93 1.2E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17380 0b61f553102e8651f14546cdeb145484 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17380 0b61f553102e8651f14546cdeb145484 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17380 0b61f553102e8651f14546cdeb145484 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Gene3D G3DSA:2.40.50.140 39 154 3.9E-69 T 11-10-2018 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 SMART SM00874 401 469 4.7E-27 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 SUPERFAMILY SSF54991 698 804 3.01E-18 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 SUPERFAMILY SSF55681 465 691 5.47E-50 T 11-10-2018 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 SUPERFAMILY SSF56037 195 390 2.88E-66 T 11-10-2018 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Pfam PF03484 tRNA synthetase B5 domain 404 469 6.9E-19 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 804 3.1E-220 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Gene3D G3DSA:3.50.40.10 197 394 4.5E-67 T 11-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Gene3D G3DSA:3.30.56.10 5 181 3.9E-69 T 11-10-2018 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Pfam PF03147 Ferredoxin-fold anticodon binding domain 703 804 1.7E-21 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Gene3D G3DSA:3.30.56.10 401 474 2.7E-24 T 11-10-2018 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Pfam PF03483 B3/4 domain 213 385 1.4E-59 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 798 42.89 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 SUPERFAMILY SSF50249 39 197 2.94E-49 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Pfam PF01588 Putative tRNA binding domain 45 145 1.8E-25 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 SMART SM00896 703 804 4.1E-24 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 SUPERFAMILY SSF46955 402 473 6.96E-19 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Gene3D G3DSA:3.30.70.380 704 805 2.4E-14 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 Gene3D G3DSA:3.30.930.10 488 693 3.6E-58 T 11-10-2018 APT56_10040 e503779ef6e290bbeb68c897c816f945 805 SMART SM00873 212 385 2.8E-78 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 APT56_14520 9c8bc0f4b2c11ed093e690e6b7803ffa 406 Gene3D G3DSA:3.40.50.2300 149 370 5.7E-96 T 11-10-2018 APT56_14520 9c8bc0f4b2c11ed093e690e6b7803ffa 406 Pfam PF13458 Periplasmic binding protein 30 369 2.2E-77 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_14520 9c8bc0f4b2c11ed093e690e6b7803ffa 406 SUPERFAMILY SSF53822 30 404 4.37E-78 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_14520 9c8bc0f4b2c11ed093e690e6b7803ffa 406 Gene3D G3DSA:3.40.50.2300 54 362 5.7E-96 T 11-10-2018 APT56_02560 6410e910a55dcb3b2dfe178dfbbafa76 143 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 131 7.3E-7 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_02560 6410e910a55dcb3b2dfe178dfbbafa76 143 SUPERFAMILY SSF54593 10 139 6.31E-24 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_02560 6410e910a55dcb3b2dfe178dfbbafa76 143 Gene3D G3DSA:3.10.180.10 3 140 3.1E-37 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_03435 931076e004a27b7a76f96271cfe1588c 225 SUPERFAMILY SSF53474 15 224 2.68E-50 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_03435 931076e004a27b7a76f96271cfe1588c 225 Gene3D G3DSA:3.40.50.1820 5 225 4.9E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_03435 931076e004a27b7a76f96271cfe1588c 225 Pfam PF02230 Phospholipase/Carboxylesterase 11 223 9.2E-49 T 11-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 APT56_11305 c9295a0af81990d3a902c7c996aecfaf 543 Pfam PF00501 AMP-binding enzyme 31 438 8.9E-91 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_11305 c9295a0af81990d3a902c7c996aecfaf 543 Gene3D G3DSA:3.40.50.12780 18 433 1.4E-105 T 11-10-2018 APT56_11305 c9295a0af81990d3a902c7c996aecfaf 543 Pfam PF13193 AMP-binding enzyme C-terminal domain 449 524 2.4E-18 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_11305 c9295a0af81990d3a902c7c996aecfaf 543 Gene3D G3DSA:3.30.300.310 436 538 4.7E-30 T 11-10-2018 APT56_11305 c9295a0af81990d3a902c7c996aecfaf 543 SUPERFAMILY SSF56801 16 536 2.62E-142 T 11-10-2018 APT56_11305 c9295a0af81990d3a902c7c996aecfaf 543 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_02690 365fb3243ff959504e2e487dc932672b 679 Gene3D G3DSA:2.170.130.10 22 165 7.6E-30 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_02690 365fb3243ff959504e2e487dc932672b 679 Pfam PF00593 TonB dependent receptor 234 678 6.4E-49 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_02690 365fb3243ff959504e2e487dc932672b 679 Gene3D G3DSA:2.40.170.20 174 679 9.8E-72 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_02690 365fb3243ff959504e2e487dc932672b 679 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 39 - T 11-10-2018 IPR010916 TonB box, conserved site APT56_02690 365fb3243ff959504e2e487dc932672b 679 SUPERFAMILY SSF56935 22 679 7.02E-116 T 11-10-2018 APT56_02690 365fb3243ff959504e2e487dc932672b 679 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 154 3.8E-21 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 PRINTS PR00061 Ribosomal protein L19 signature 38 67 3.8E-32 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 PRINTS PR00061 Ribosomal protein L19 signature 92 117 3.8E-32 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 PRINTS PR00061 Ribosomal protein L19 signature 8 37 3.8E-32 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 PIRSF PIRSF002191 1 126 2.1E-50 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 Pfam PF01245 Ribosomal protein L19 9 117 2.9E-45 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 SUPERFAMILY SSF50104 2 118 4.81E-43 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 Gene3D G3DSA:2.30.30.790 4 122 1.0E-16 T 11-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 11-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 117 2.0E-46 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_07720 b2389ce6c4e6845e31ce2d112a80de69 126 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 118 29.697 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 SUPERFAMILY SSF52172 5 141 2.85E-32 T 11-10-2018 IPR011006 CheY-like superfamily APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 SMART SM00448 8 130 5.6E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 212 6.6E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 1.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 1.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 1.7E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 172 199 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 Pfam PF00072 Response regulator receiver domain 11 130 4.8E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 SUPERFAMILY SSF46894 146 215 1.29E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 Gene3D G3DSA:3.40.50.12740 8 217 3.4E-61 T 11-10-2018 APT56_12705 ac704584a67a777e8dc65a1a22d75069 218 SMART SM00421 155 212 6.3E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_14425 e05b9a0bb58a2f698bee1bf38c22d3e1 200 Gene3D G3DSA:3.40.630.30 3 199 2.2E-45 T 11-10-2018 APT56_14425 e05b9a0bb58a2f698bee1bf38c22d3e1 200 Pfam PF13302 Acetyltransferase (GNAT) domain 18 154 3.7E-18 T 11-10-2018 IPR000182 GNAT domain APT56_14425 e05b9a0bb58a2f698bee1bf38c22d3e1 200 SUPERFAMILY SSF55729 8 181 5.82E-38 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_01475 3dfef03605f771ecfee49d49f85c764e 353 Gene3D G3DSA:3.40.50.2000 14 343 2.1E-46 T 11-10-2018 APT56_01475 3dfef03605f771ecfee49d49f85c764e 353 Pfam PF13439 Glycosyltransferase Family 4 13 152 6.0E-12 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_01475 3dfef03605f771ecfee49d49f85c764e 353 Pfam PF00534 Glycosyl transferases group 1 172 327 2.3E-23 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_01475 3dfef03605f771ecfee49d49f85c764e 353 Gene3D G3DSA:3.40.50.2000 157 333 2.1E-46 T 11-10-2018 APT56_01475 3dfef03605f771ecfee49d49f85c764e 353 SUPERFAMILY SSF53756 2 349 3.22E-57 T 11-10-2018 APT56_03510 ab8eda14af93d00315423d596b51b73e 470 Gene3D G3DSA:3.10.450.350 80 170 7.8E-18 T 11-10-2018 APT56_03510 ab8eda14af93d00315423d596b51b73e 470 Gene3D G3DSA:2.70.70.10 296 426 1.8E-94 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_03510 ab8eda14af93d00315423d596b51b73e 470 Gene3D G3DSA:3.10.450.350 198 441 1.8E-94 T 11-10-2018 APT56_03510 ab8eda14af93d00315423d596b51b73e 470 SUPERFAMILY SSF51261 169 422 2.46E-73 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_03510 ab8eda14af93d00315423d596b51b73e 470 Pfam PF01551 Peptidase family M23 324 420 1.9E-34 T 11-10-2018 IPR016047 Peptidase M23 APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 SUPERFAMILY SSF46689 178 211 7.62E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 Gene3D G3DSA:1.10.10.60 167 221 8.4E-10 T 11-10-2018 APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 214 255 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 Pfam PF12833 Helix-turn-helix domain 183 260 8.0E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 Gene3D G3DSA:1.10.10.60 222 261 9.5E-10 T 11-10-2018 APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 SUPERFAMILY SSF51215 14 128 5.1E-11 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 SMART SM00342 177 259 5.1E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 SUPERFAMILY SSF46689 214 260 2.06E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_01495 ec17cc924a124ffae27d1f834efd501d 261 Pfam PF02311 AraC-like ligand binding domain 24 124 1.8E-12 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_10425 2d8ecd8787a2658d3208f2a084d43305 343 Gene3D G3DSA:3.40.190.10 156 334 9.8E-19 T 11-10-2018 APT56_10425 2d8ecd8787a2658d3208f2a084d43305 343 Pfam PF09084 NMT1/THI5 like 63 271 1.1E-17 T 11-10-2018 IPR015168 SsuA/THI5-like APT56_10425 2d8ecd8787a2658d3208f2a084d43305 343 SUPERFAMILY SSF53850 47 278 2.06E-36 T 11-10-2018 APT56_10425 2d8ecd8787a2658d3208f2a084d43305 343 SMART SM00062 49 268 0.0016 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_10425 2d8ecd8787a2658d3208f2a084d43305 343 Gene3D G3DSA:3.40.190.10 42 155 4.0E-10 T 11-10-2018 APT56_21910 f634b9d690f1b6ff82eb8f7b411084f4 436 Pfam PF00860 Permease family 32 408 8.2E-89 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 APT56_21910 f634b9d690f1b6ff82eb8f7b411084f4 436 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 355 375 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APT56_21910 f634b9d690f1b6ff82eb8f7b411084f4 436 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 28 430 2.6E-104 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APT56_12565 e8f758e56dcb84fd01f216286aa0afb3 225 Gene3D G3DSA:3.20.20.70 4 220 1.7E-6 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_12565 e8f758e56dcb84fd01f216286aa0afb3 225 SUPERFAMILY SSF51366 54 207 1.41E-9 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_15630 b8edf478777661b741bc2228e37b97ac 1075 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 304 724 1.0E-144 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_15630 b8edf478777661b741bc2228e37b97ac 1075 SUPERFAMILY SSF89550 26 82 2.55E-5 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APT56_15630 b8edf478777661b741bc2228e37b97ac 1075 Gene3D G3DSA:3.20.20.140 16 281 1.1E-53 T 11-10-2018 APT56_15630 b8edf478777661b741bc2228e37b97ac 1075 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 21 1075 13.892 T 11-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_15630 b8edf478777661b741bc2228e37b97ac 1075 SMART SM00481 22 89 1.4E-11 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal APT56_15630 b8edf478777661b741bc2228e37b97ac 1075 Pfam PF14579 Helix-hairpin-helix motif 800 906 6.7E-21 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_15630 b8edf478777661b741bc2228e37b97ac 1075 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 22 1019 3.4E-152 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_15630 b8edf478777661b741bc2228e37b97ac 1075 Pfam PF02811 PHP domain 23 128 1.7E-15 T 11-10-2018 IPR004013 PHP domain GO:0003824 APT56_19855 bf45e206430a5946353cf50211f67fbe 696 SUPERFAMILY SSF52540 13 636 1.27E-125 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19855 bf45e206430a5946353cf50211f67fbe 696 Pfam PF00580 UvrD/REP helicase N-terminal domain 37 300 1.3E-50 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 APT56_19855 bf45e206430a5946353cf50211f67fbe 696 Gene3D G3DSA:1.10.10.160 134 219 1.0E-74 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily APT56_19855 bf45e206430a5946353cf50211f67fbe 696 Gene3D G3DSA:3.40.50.300 19 301 1.0E-74 T 11-10-2018 APT56_19855 bf45e206430a5946353cf50211f67fbe 696 Gene3D G3DSA:3.40.50.300 311 635 3.7E-69 T 11-10-2018 APT56_19855 bf45e206430a5946353cf50211f67fbe 696 Pfam PF13361 UvrD-like helicase C-terminal domain 307 461 1.3E-17 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT56_19855 bf45e206430a5946353cf50211f67fbe 696 Gene3D G3DSA:1.10.486.10 412 556 3.7E-69 T 11-10-2018 APT56_19855 bf45e206430a5946353cf50211f67fbe 696 Pfam PF13361 UvrD-like helicase C-terminal domain 565 630 2.1E-19 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT56_07940 dc224282426cb903a87096419fed95f4 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 77 3.4E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07940 dc224282426cb903a87096419fed95f4 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 54 8.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07940 dc224282426cb903a87096419fed95f4 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 54 65 8.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07940 dc224282426cb903a87096419fed95f4 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 44 8.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07940 dc224282426cb903a87096419fed95f4 314 Gene3D G3DSA:3.40.190.10 180 285 1.5E-26 T 11-10-2018 APT56_07940 dc224282426cb903a87096419fed95f4 314 Gene3D G3DSA:1.10.10.10 16 103 7.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07940 dc224282426cb903a87096419fed95f4 314 SUPERFAMILY SSF46785 17 125 3.48E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_07940 dc224282426cb903a87096419fed95f4 314 SUPERFAMILY SSF53850 100 294 1.18E-26 T 11-10-2018 APT56_07940 dc224282426cb903a87096419fed95f4 314 Gene3D G3DSA:3.40.190.10 108 291 1.5E-26 T 11-10-2018 APT56_07940 dc224282426cb903a87096419fed95f4 314 Pfam PF03466 LysR substrate binding domain 102 291 2.9E-25 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_15980 4c39f40522ebd8cc2e316e0f1386aac6 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 9 189 3.7E-18 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_15980 4c39f40522ebd8cc2e316e0f1386aac6 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 188 1.3E-24 T 11-10-2018 APT56_15980 4c39f40522ebd8cc2e316e0f1386aac6 222 Gene3D G3DSA:3.40.50.1000 9 210 2.3E-60 T 11-10-2018 IPR023214 HAD superfamily APT56_15980 4c39f40522ebd8cc2e316e0f1386aac6 222 Gene3D G3DSA:1.10.150.240 21 87 2.3E-60 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APT56_15980 4c39f40522ebd8cc2e316e0f1386aac6 222 SUPERFAMILY SSF56784 6 222 1.76E-50 T 11-10-2018 IPR036412 HAD-like superfamily APT56_14870 f67f8b60d96c4354ec3bd3e91f376310 309 Pfam PF03755 YicC-like family, N-terminal region 2 153 4.4E-36 T 11-10-2018 IPR013527 YicC-like, N-terminal APT56_14870 f67f8b60d96c4354ec3bd3e91f376310 309 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 309 1.1E-63 T 11-10-2018 IPR005229 Conserved hypothetical protein CHP00255 APT56_14870 f67f8b60d96c4354ec3bd3e91f376310 309 Pfam PF08340 Domain of unknown function (DUF1732) 215 309 2.1E-33 T 11-10-2018 IPR013551 Domain of unknown function DUF1732 APT56_04525 5bd3e0359e332f57c92e19ea01e87fd0 147 Pfam PF01475 Ferric uptake regulator family 10 129 3.3E-37 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 APT56_04525 5bd3e0359e332f57c92e19ea01e87fd0 147 Gene3D G3DSA:1.10.10.10 1 83 2.7E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04525 5bd3e0359e332f57c92e19ea01e87fd0 147 Gene3D G3DSA:3.30.1490.190 84 138 8.0E-16 T 11-10-2018 APT56_04525 5bd3e0359e332f57c92e19ea01e87fd0 147 SUPERFAMILY SSF46785 6 133 1.33E-37 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14830 31073ec4bfb3e9176611993dc6cd7832 207 SUPERFAMILY SSF52972 10 204 2.49E-66 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APT56_14830 31073ec4bfb3e9176611993dc6cd7832 207 Gene3D G3DSA:3.90.950.10 8 207 4.2E-71 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APT56_14830 31073ec4bfb3e9176611993dc6cd7832 207 Pfam PF01725 Ham1 family 13 201 2.5E-52 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 APT56_14830 31073ec4bfb3e9176611993dc6cd7832 207 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 13 204 6.8E-50 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 APT56_14830 31073ec4bfb3e9176611993dc6cd7832 207 Hamap MF_01405 dITP/XTP pyrophosphatase. 11 206 45.9 T 11-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 APT56_27225 e7cce18e0cdb2b556cf27a672580d11d 374 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 278 372 6.5E-22 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT56_27225 e7cce18e0cdb2b556cf27a672580d11d 374 SUPERFAMILY SSF52540 12 216 7.5E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27225 e7cce18e0cdb2b556cf27a672580d11d 374 Gene3D G3DSA:3.40.50.300 8 212 1.5E-69 T 11-10-2018 APT56_27225 e7cce18e0cdb2b556cf27a672580d11d 374 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 193 4.5E-51 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT56_27225 e7cce18e0cdb2b556cf27a672580d11d 374 Gene3D G3DSA:3.30.1220.10 260 372 6.3E-33 T 11-10-2018 IPR036627 CobW-like, C-terminal domain superfamily APT56_27225 e7cce18e0cdb2b556cf27a672580d11d 374 SMART SM00833 278 372 3.8E-18 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT56_27225 e7cce18e0cdb2b556cf27a672580d11d 374 SUPERFAMILY SSF90002 278 372 1.44E-25 T 11-10-2018 APT56_17310 23214bc88d1ca996422d9faa2f4a9139 281 Gene3D G3DSA:3.20.20.140 8 254 1.1E-83 T 11-10-2018 APT56_17310 23214bc88d1ca996422d9faa2f4a9139 281 Gene3D G3DSA:1.10.150.650 101 173 1.1E-83 T 11-10-2018 APT56_17310 23214bc88d1ca996422d9faa2f4a9139 281 Pfam PF02811 PHP domain 9 103 3.3E-8 T 11-10-2018 IPR004013 PHP domain GO:0003824 APT56_17310 23214bc88d1ca996422d9faa2f4a9139 281 SMART SM00481 8 73 7.2E-15 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal APT56_17310 23214bc88d1ca996422d9faa2f4a9139 281 SUPERFAMILY SSF89550 6 280 4.12E-50 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 Gene3D G3DSA:3.30.230.10 81 173 3.9E-35 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 17 170 4.8E-63 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 Pfam PF00333 Ribosomal protein S5, N-terminal domain 18 81 3.5E-24 T 11-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 Gene3D G3DSA:3.30.160.20 8 79 4.1E-26 T 11-10-2018 APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 Pfam PF03719 Ribosomal protein S5, C-terminal domain 94 164 3.1E-27 T 11-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 SUPERFAMILY SSF54211 86 166 1.04E-24 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 SUPERFAMILY SSF54768 15 82 9.42E-21 T 11-10-2018 APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 170 33.741 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT56_27705 7296edbe7be7736b1a2ef266f5e1c82c 173 ProSitePatterns PS00585 Ribosomal protein S5 signature. 35 67 - T 11-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site APT56_22260 a1379b215aaaf942fd6b9f4d99a4f729 286 SUPERFAMILY SSF55781 79 256 2.75E-47 T 11-10-2018 APT56_22260 a1379b215aaaf942fd6b9f4d99a4f729 286 Gene3D G3DSA:1.10.10.10 6 83 2.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22260 a1379b215aaaf942fd6b9f4d99a4f729 286 Pfam PF01614 Bacterial transcriptional regulator 131 256 9.9E-29 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_22260 a1379b215aaaf942fd6b9f4d99a4f729 286 SMART SM00346 13 103 7.3E-23 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_22260 a1379b215aaaf942fd6b9f4d99a4f729 286 Pfam PF09339 IclR helix-turn-helix domain 15 66 2.4E-17 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_22260 a1379b215aaaf942fd6b9f4d99a4f729 286 SUPERFAMILY SSF46785 14 86 5.64E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22260 a1379b215aaaf942fd6b9f4d99a4f729 286 Gene3D G3DSA:3.30.450.40 84 260 9.3E-48 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_09935 29e997d99a0163914bc156db5ece338a 571 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 197 334 2.3E-29 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT56_09935 29e997d99a0163914bc156db5ece338a 571 Gene3D G3DSA:3.40.50.970 366 568 5.2E-55 T 11-10-2018 APT56_09935 29e997d99a0163914bc156db5ece338a 571 SUPERFAMILY SSF52518 9 188 9.06E-51 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_09935 29e997d99a0163914bc156db5ece338a 571 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 391 541 5.0E-36 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_09935 29e997d99a0163914bc156db5ece338a 571 SUPERFAMILY SSF52518 367 549 3.4E-53 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_09935 29e997d99a0163914bc156db5ece338a 571 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 10 176 6.0E-51 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_09935 29e997d99a0163914bc156db5ece338a 571 Gene3D G3DSA:3.40.50.1220 192 359 1.5E-37 T 11-10-2018 APT56_09935 29e997d99a0163914bc156db5ece338a 571 Gene3D G3DSA:3.40.50.970 5 182 1.6E-57 T 11-10-2018 APT56_09935 29e997d99a0163914bc156db5ece338a 571 SUPERFAMILY SSF52467 162 360 2.4E-37 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_21535 da2fa92c92a5ea315d4ae1b9ab1a01eb 288 Pfam PF03466 LysR substrate binding domain 88 284 4.8E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21535 da2fa92c92a5ea315d4ae1b9ab1a01eb 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.1E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21535 da2fa92c92a5ea315d4ae1b9ab1a01eb 288 Gene3D G3DSA:1.10.10.10 1 88 4.9E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21535 da2fa92c92a5ea315d4ae1b9ab1a01eb 288 Gene3D G3DSA:3.40.190.290 90 285 2.5E-33 T 11-10-2018 APT56_21535 da2fa92c92a5ea315d4ae1b9ab1a01eb 288 SUPERFAMILY SSF53850 89 286 2.17E-39 T 11-10-2018 APT56_21535 da2fa92c92a5ea315d4ae1b9ab1a01eb 288 SUPERFAMILY SSF46785 1 111 7.0E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10585 7deee794df55cfae94792b66fe22ddc7 417 Gene3D G3DSA:3.50.50.60 2 415 1.1E-126 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10585 7deee794df55cfae94792b66fe22ddc7 417 Pfam PF01494 FAD binding domain 5 331 7.1E-15 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_10585 7deee794df55cfae94792b66fe22ddc7 417 SUPERFAMILY SSF51905 3 385 1.22E-45 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_20690 a7696fb3cf831c19be47b5e25a6e91ab 235 SUPERFAMILY SSF46894 130 222 1.53E-11 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_20690 a7696fb3cf831c19be47b5e25a6e91ab 235 SMART SM00448 1 112 4.0E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20690 a7696fb3cf831c19be47b5e25a6e91ab 235 SMART SM00862 146 222 0.0096 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_20690 a7696fb3cf831c19be47b5e25a6e91ab 235 Gene3D G3DSA:1.10.10.10 125 222 2.6E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20690 a7696fb3cf831c19be47b5e25a6e91ab 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 7.2E-6 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_20690 a7696fb3cf831c19be47b5e25a6e91ab 235 Gene3D G3DSA:3.40.50.2300 1 121 4.0E-20 T 11-10-2018 APT56_20690 a7696fb3cf831c19be47b5e25a6e91ab 235 SUPERFAMILY SSF52172 1 122 4.13E-25 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20690 a7696fb3cf831c19be47b5e25a6e91ab 235 Pfam PF00072 Response regulator receiver domain 3 108 2.4E-12 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_11210 03a41510e8d0adfef498fea3040ccda5 259 SMART SM01007 32 210 1.1E-39 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_11210 03a41510e8d0adfef498fea3040ccda5 259 Gene3D G3DSA:3.40.225.10 16 251 2.2E-48 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_11210 03a41510e8d0adfef498fea3040ccda5 259 SUPERFAMILY SSF53639 29 235 6.08E-51 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_11210 03a41510e8d0adfef498fea3040ccda5 259 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 33 210 4.1E-35 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_12180 2ffa07d8fb5f9f78f389034372be1760 323 PIRSF PIRSF017082 1 323 3.4E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_12180 2ffa07d8fb5f9f78f389034372be1760 323 Gene3D G3DSA:3.40.190.10 127 248 1.4E-111 T 11-10-2018 APT56_12180 2ffa07d8fb5f9f78f389034372be1760 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 319 9.7E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_12180 2ffa07d8fb5f9f78f389034372be1760 323 SUPERFAMILY SSF53850 117 284 1.09E-13 T 11-10-2018 APT56_12180 2ffa07d8fb5f9f78f389034372be1760 323 Gene3D G3DSA:3.40.190.150 29 313 1.4E-111 T 11-10-2018 APT56_17165 19d3f2e60eaab5c004efe666a594a27d 459 Pfam PF03729 Short repeat of unknown function (DUF308) 81 147 7.3E-5 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 PIRSF PIRSF036979 6 306 3.9E-29 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 SUPERFAMILY SSF52768 10 306 3.06E-87 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 PRINTS PR00116 Arginase signature 100 115 2.5E-43 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 PRINTS PR00116 Arginase signature 264 278 2.5E-43 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 PRINTS PR00116 Arginase signature 229 258 2.5E-43 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 PRINTS PR00116 Arginase signature 181 199 2.5E-43 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 PRINTS PR00116 Arginase signature 127 154 2.5E-43 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 Gene3D G3DSA:3.40.800.10 9 307 1.4E-90 T 11-10-2018 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 TIGRFAM TIGR01229 rocF_arginase: arginase 13 306 1.2E-84 T 11-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 ProSitePatterns PS01053 Arginase family signature. 232 253 - T 11-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 APT56_14510 3f2bf56fb1ab582656b02afeb741e8f1 312 Pfam PF00491 Arginase family 10 302 2.9E-74 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 Pfam PF00717 Peptidase S24-like 129 191 6.5E-16 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 126 136 2.1E-10 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 137 148 2.1E-10 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 165 177 2.1E-10 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 Gene3D G3DSA:2.10.109.10 95 214 2.9E-39 T 11-10-2018 APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 Hamap MF_00015 LexA repressor [lexA]. 4 213 32.151 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 SUPERFAMILY SSF46785 4 71 2.29E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 TIGRFAM TIGR00498 lexA: repressor LexA 3 211 3.8E-69 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 SUPERFAMILY SSF51306 90 211 6.28E-34 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 Gene3D G3DSA:1.10.10.10 2 70 2.5E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17715 6489fff2fe713ec9cfd738152accbab8 216 Pfam PF01726 LexA DNA binding domain 3 66 1.8E-28 T 11-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 APT56_27675 aee99031bc8ebf5a66483e17c1571632 133 SUPERFAMILY SSF53137 18 133 9.16E-47 T 11-10-2018 APT56_27675 aee99031bc8ebf5a66483e17c1571632 133 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 14 130 3.5E-55 T 11-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27675 aee99031bc8ebf5a66483e17c1571632 133 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 133 32.814 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APT56_27675 aee99031bc8ebf5a66483e17c1571632 133 ProSitePatterns PS00054 Ribosomal protein S11 signature. 101 123 - T 11-10-2018 IPR018102 Ribosomal S11, conserved site APT56_27675 aee99031bc8ebf5a66483e17c1571632 133 PIRSF PIRSF002131 1 133 3.4E-52 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APT56_27675 aee99031bc8ebf5a66483e17c1571632 133 Pfam PF00411 Ribosomal protein S11 23 132 6.6E-50 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APT56_27675 aee99031bc8ebf5a66483e17c1571632 133 Gene3D G3DSA:3.30.420.80 6 133 3.2E-54 T 11-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_24395 1b1c91964d4c8e5b94558eee59edf2b7 256 SMART SM00382 30 230 4.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24395 1b1c91964d4c8e5b94558eee59edf2b7 256 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_24395 1b1c91964d4c8e5b94558eee59edf2b7 256 SUPERFAMILY SSF52540 5 240 1.03E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24395 1b1c91964d4c8e5b94558eee59edf2b7 256 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 5 250 3.1E-89 T 11-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 APT56_24395 1b1c91964d4c8e5b94558eee59edf2b7 256 Gene3D G3DSA:3.40.50.300 2 248 2.5E-63 T 11-10-2018 APT56_24395 1b1c91964d4c8e5b94558eee59edf2b7 256 Pfam PF00005 ABC transporter 21 181 5.4E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27155 80d1300fd8b2fdc26bd7f93d59e9fc07 434 Gene3D G3DSA:1.20.1250.20 21 434 1.1E-68 T 11-10-2018 APT56_27155 80d1300fd8b2fdc26bd7f93d59e9fc07 434 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_27155 80d1300fd8b2fdc26bd7f93d59e9fc07 434 Pfam PF07690 Major Facilitator Superfamily 33 377 4.4E-30 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_27155 80d1300fd8b2fdc26bd7f93d59e9fc07 434 ProSitePatterns PS00216 Sugar transport proteins signature 1. 84 100 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_27155 80d1300fd8b2fdc26bd7f93d59e9fc07 434 SUPERFAMILY SSF103473 23 433 1.01E-67 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_26780 11ba214a7eea254b1954721903313e4d 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 340 1.5E-153 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APT56_26780 11ba214a7eea254b1954721903313e4d 347 SUPERFAMILY SSF53067 156 337 8.96E-49 T 11-10-2018 APT56_26780 11ba214a7eea254b1954721903313e4d 347 Gene3D G3DSA:3.30.420.40 159 322 1.8E-130 T 11-10-2018 APT56_26780 11ba214a7eea254b1954721903313e4d 347 Gene3D G3DSA:3.30.420.40 13 332 1.8E-130 T 11-10-2018 APT56_26780 11ba214a7eea254b1954721903313e4d 347 SUPERFAMILY SSF53067 9 153 4.65E-37 T 11-10-2018 APT56_26780 11ba214a7eea254b1954721903313e4d 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 53 71 9.0E-62 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APT56_26780 11ba214a7eea254b1954721903313e4d 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 137 156 9.0E-62 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APT56_26780 11ba214a7eea254b1954721903313e4d 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 73 96 9.0E-62 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APT56_26780 11ba214a7eea254b1954721903313e4d 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 192 212 9.0E-62 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APT56_26780 11ba214a7eea254b1954721903313e4d 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 9.0E-62 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APT56_26780 11ba214a7eea254b1954721903313e4d 347 Gene3D G3DSA:3.90.640.10 191 264 1.8E-130 T 11-10-2018 APT56_26780 11ba214a7eea254b1954721903313e4d 347 Pfam PF06723 MreB/Mbl protein 11 340 3.3E-147 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 Gene3D G3DSA:3.40.50.620 11 230 7.0E-70 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 SMART SM00363 347 408 4.4E-5 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 Gene3D G3DSA:3.10.290.10 339 407 4.9E-18 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 13 407 8.4E-120 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 54 64 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 Gene3D G3DSA:1.10.240.10 231 338 1.9E-33 T 11-10-2018 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 Pfam PF00579 tRNA synthetases class I (W and Y) 45 328 1.4E-73 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 SUPERFAMILY SSF55174 327 404 3.27E-19 T 11-10-2018 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 223 235 1.4E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 173 188 1.4E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 58 80 1.4E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 190 212 1.4E-25 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 Pfam PF01479 S4 domain 349 391 1.3E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 SUPERFAMILY SSF52374 18 328 7.88E-89 T 11-10-2018 APT56_03515 0fc87f91a4e3e3c84330855c465fa004 409 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 10 407 48.003 T 11-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 APT56_01465 2c5badd69bdfaa5f296d29d86b5effff 471 Gene3D G3DSA:1.20.1720.10 39 270 4.3E-43 T 11-10-2018 APT56_01465 2c5badd69bdfaa5f296d29d86b5effff 471 SUPERFAMILY SSF103473 24 462 7.59E-64 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_01465 2c5badd69bdfaa5f296d29d86b5effff 471 Gene3D G3DSA:1.20.1250.20 279 467 4.6E-19 T 11-10-2018 APT56_01465 2c5badd69bdfaa5f296d29d86b5effff 471 Pfam PF07690 Major Facilitator Superfamily 43 427 3.9E-47 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_01465 2c5badd69bdfaa5f296d29d86b5effff 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 418 437 5.3E-5 T 11-10-2018 APT56_01465 2c5badd69bdfaa5f296d29d86b5effff 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 131 151 5.3E-5 T 11-10-2018 APT56_01465 2c5badd69bdfaa5f296d29d86b5effff 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 161 185 5.3E-5 T 11-10-2018 APT56_01465 2c5badd69bdfaa5f296d29d86b5effff 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 40 64 5.3E-5 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 SUPERFAMILY SSF82714 699 786 5.1E-19 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Gene3D G3DSA:3.30.70.1430 40 794 1.0E-283 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Gene3D G3DSA:3.30.70.1430 555 647 1.0E-283 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Gene3D G3DSA:3.30.2090.10 178 268 1.0E-283 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Gene3D G3DSA:3.30.70.1440 648 842 1.0E-283 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 SUPERFAMILY SSF82693 43 130 1.03E-23 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 SUPERFAMILY SSF82693 650 833 2.3E-23 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Gene3D G3DSA:3.30.2090.10 698 786 1.0E-283 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Gene3D G3DSA:1.20.1640.10 501 1000 1.0E-283 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 2.0E-70 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Gene3D G3DSA:1.20.1640.10 10 500 1.0E-283 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 SUPERFAMILY SSF82866 299 489 5.1E-47 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 1.3E-262 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 SUPERFAMILY SSF82714 183 264 1.31E-15 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 SUPERFAMILY SSF82693 553 650 5.75E-17 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 SUPERFAMILY SSF82866 817 1004 9.02E-43 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 Gene3D G3DSA:3.30.70.1320 134 325 1.0E-283 T 11-10-2018 APT56_06305 7c459583a2b7614efb3152f096fca16f 1039 SUPERFAMILY SSF82693 137 320 2.88E-17 T 11-10-2018 APT56_10880 60785fbd5fc204947ab32e8bd4a7cef1 542 SUPERFAMILY SSF51905 8 533 3.89E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10880 60785fbd5fc204947ab32e8bd4a7cef1 542 Gene3D G3DSA:3.50.50.60 191 327 6.4E-18 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10880 60785fbd5fc204947ab32e8bd4a7cef1 542 Gene3D G3DSA:3.50.50.60 9 115 2.1E-14 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10880 60785fbd5fc204947ab32e8bd4a7cef1 542 Pfam PF01593 Flavin containing amine oxidoreductase 21 345 2.0E-17 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT56_14090 fdded3b5cc5cd403bd2399c29db2f51f 241 SUPERFAMILY SSF55174 6 91 6.54E-13 T 11-10-2018 APT56_14090 fdded3b5cc5cd403bd2399c29db2f51f 241 Gene3D G3DSA:3.30.2350.10 64 240 1.4E-24 T 11-10-2018 APT56_14090 fdded3b5cc5cd403bd2399c29db2f51f 241 Gene3D G3DSA:3.10.290.10 2 63 4.2E-14 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_14090 fdded3b5cc5cd403bd2399c29db2f51f 241 Pfam PF01479 S4 domain 5 49 5.7E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_14090 fdded3b5cc5cd403bd2399c29db2f51f 241 SMART SM00363 5 70 0.0011 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_14090 fdded3b5cc5cd403bd2399c29db2f51f 241 SUPERFAMILY SSF55120 65 239 7.2E-19 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 SUPERFAMILY SSF53850 89 282 4.96E-25 T 11-10-2018 APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 SUPERFAMILY SSF46785 4 85 4.45E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 Pfam PF03466 LysR substrate binding domain 88 281 3.6E-27 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 Gene3D G3DSA:3.40.190.10 162 255 1.7E-48 T 11-10-2018 APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 8.6E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 Gene3D G3DSA:3.40.190.10 95 261 1.7E-48 T 11-10-2018 APT56_26075 a6edef0528793a4ac7f4023678a79c35 287 Gene3D G3DSA:1.10.10.10 1 84 1.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02910 51336a9a395bdc551f7d7b4467a579b1 215 Gene3D G3DSA:3.40.50.300 1 209 1.1E-60 T 11-10-2018 APT56_02910 51336a9a395bdc551f7d7b4467a579b1 215 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 195 25.663 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 APT56_02910 51336a9a395bdc551f7d7b4467a579b1 215 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 179 2.6E-41 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 APT56_02910 51336a9a395bdc551f7d7b4467a579b1 215 SUPERFAMILY SSF52540 1 198 1.4E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02910 51336a9a395bdc551f7d7b4467a579b1 215 Pfam PF01121 Dephospho-CoA kinase 4 178 5.7E-54 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 APT56_18335 ed717382c2019e0765e1a164822c0fa9 332 Gene3D G3DSA:3.40.190.150 32 322 5.8E-113 T 11-10-2018 APT56_18335 ed717382c2019e0765e1a164822c0fa9 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 327 1.1E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18335 ed717382c2019e0765e1a164822c0fa9 332 PIRSF PIRSF017082 2 331 9.9E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18335 ed717382c2019e0765e1a164822c0fa9 332 SUPERFAMILY SSF53850 140 286 3.15E-11 T 11-10-2018 APT56_18335 ed717382c2019e0765e1a164822c0fa9 332 Gene3D G3DSA:3.40.190.10 130 257 5.8E-113 T 11-10-2018 APT56_20375 2b8f20c2451e32e9825300c60776e9ea 181 Gene3D G3DSA:3.30.70.100 9 98 1.0E-5 T 11-10-2018 APT56_20375 2b8f20c2451e32e9825300c60776e9ea 181 SUPERFAMILY SSF54909 4 107 6.71E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_05435 aabb3bc3da700c634f1ad41e67a8e729 287 Gene3D G3DSA:3.30.450.40 96 274 4.5E-55 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_05435 aabb3bc3da700c634f1ad41e67a8e729 287 Pfam PF01614 Bacterial transcriptional regulator 143 262 3.2E-32 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_05435 aabb3bc3da700c634f1ad41e67a8e729 287 SMART SM00346 25 114 4.3E-23 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_05435 aabb3bc3da700c634f1ad41e67a8e729 287 SUPERFAMILY SSF55781 82 267 5.95E-47 T 11-10-2018 APT56_05435 aabb3bc3da700c634f1ad41e67a8e729 287 Pfam PF09339 IclR helix-turn-helix domain 28 77 3.1E-16 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_05435 aabb3bc3da700c634f1ad41e67a8e729 287 Gene3D G3DSA:1.10.10.10 23 95 2.3E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05435 aabb3bc3da700c634f1ad41e67a8e729 287 SUPERFAMILY SSF46785 25 96 4.62E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 90 1.6E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 SUPERFAMILY SSF64288 79 257 1.52E-42 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 SMART SM00866 111 253 2.2E-37 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 SUPERFAMILY SSF46785 25 102 7.66E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 Gene3D G3DSA:3.40.1410.10 98 258 1.8E-60 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 Pfam PF07702 UTRA domain 115 253 9.3E-36 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 Gene3D G3DSA:1.10.10.10 23 91 1.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 80 1.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 64 1.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_07155 9ce89de0e111e2cf1aebaf33eda7237e 259 SMART SM00345 31 90 1.1E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 SMART SM00883 2 94 3.7E-53 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 Pfam PF00166 Chaperonin 10 Kd subunit 2 93 9.6E-34 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 PRINTS PR00297 10kDa chaperonin signature 60 72 3.8E-31 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 PRINTS PR00297 10kDa chaperonin signature 81 94 3.8E-31 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 PRINTS PR00297 10kDa chaperonin signature 3 18 3.8E-31 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 PRINTS PR00297 10kDa chaperonin signature 25 46 3.8E-31 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 Gene3D G3DSA:2.30.33.40 1 103 5.8E-36 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.106 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_17430 fd345b6c437f9312195e7765a87182dd 105 SUPERFAMILY SSF50129 1 94 2.24E-32 T 11-10-2018 IPR011032 GroES-like superfamily APT56_17430 fd345b6c437f9312195e7765a87182dd 105 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 APT56_17840 742d97cb621d914459a65c584cb7a0d8 319 Gene3D G3DSA:3.10.450.50 198 316 2.0E-42 T 11-10-2018 APT56_17840 742d97cb621d914459a65c584cb7a0d8 319 SUPERFAMILY SSF109604 7 168 2.02E-33 T 11-10-2018 APT56_17840 742d97cb621d914459a65c584cb7a0d8 319 Pfam PF12680 SnoaL-like domain 205 304 1.8E-14 T 11-10-2018 IPR037401 SnoaL-like domain APT56_17840 742d97cb621d914459a65c584cb7a0d8 319 Gene3D G3DSA:1.10.3210.10 1 189 1.2E-38 T 11-10-2018 APT56_17840 742d97cb621d914459a65c584cb7a0d8 319 SUPERFAMILY SSF54427 198 309 1.72E-31 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_17840 742d97cb621d914459a65c584cb7a0d8 319 Pfam PF13023 HD domain 16 170 1.9E-36 T 11-10-2018 IPR006674 HD domain APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 SUPERFAMILY SSF64518 397 566 9.81E-35 T 11-10-2018 APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 SUPERFAMILY SSF64518 1 370 2.48E-66 T 11-10-2018 APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 Pfam PF12445 Flagellin protein 336 471 4.9E-8 T 11-10-2018 IPR032826 Flagellin, H7-serospecific domain APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 Gene3D G3DSA:1.20.58.1830 2 58 7.2E-10 T 11-10-2018 APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 PRINTS PR00207 Flagellin signature 37 54 1.0E-26 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 PRINTS PR00207 Flagellin signature 111 134 1.0E-26 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 PRINTS PR00207 Flagellin signature 76 95 1.0E-26 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 3.0E-44 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 Gene3D G3DSA:1.10.8.410 519 566 1.8E-23 T 11-10-2018 APT56_20695 0b2f73a911624b05b573d85ded2a70d1 566 Pfam PF00700 Bacterial flagellin C-terminal helical region 481 565 2.3E-27 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 APT56_14965 f6e6bdd834dd08528ae4eba9937ac1cd 256 Pfam PF00293 NUDIX domain 129 230 4.6E-18 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_14965 f6e6bdd834dd08528ae4eba9937ac1cd 256 ProSitePatterns PS00893 Nudix box signature. 158 179 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APT56_14965 f6e6bdd834dd08528ae4eba9937ac1cd 256 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 10 90 6.3E-6 T 11-10-2018 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 APT56_14965 f6e6bdd834dd08528ae4eba9937ac1cd 256 Gene3D G3DSA:3.90.79.20 2 124 2.6E-21 T 11-10-2018 APT56_14965 f6e6bdd834dd08528ae4eba9937ac1cd 256 Gene3D G3DSA:3.90.79.10 125 250 3.1E-36 T 11-10-2018 APT56_14965 f6e6bdd834dd08528ae4eba9937ac1cd 256 SUPERFAMILY SSF55811 77 231 7.08E-42 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_14965 f6e6bdd834dd08528ae4eba9937ac1cd 256 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 92 119 1.3E-9 T 11-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 APT56_26620 3e8f0cb7395438aa6b5bbe8e458a073a 524 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 2.3E-177 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APT56_26620 3e8f0cb7395438aa6b5bbe8e458a073a 524 PIRSF PIRSF006446 2 325 9.2E-114 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APT56_26620 3e8f0cb7395438aa6b5bbe8e458a073a 524 PIRSF PIRSF006446 337 523 1.5E-39 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 Gene3D G3DSA:3.40.50.300 248 518 9.2E-64 T 11-10-2018 APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 Gene3D G3DSA:3.40.50.300 2 229 8.7E-62 T 11-10-2018 APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 Pfam PF00005 ABC transporter 22 152 1.8E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 SUPERFAMILY SSF52540 281 481 4.31E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 Pfam PF00005 ABC transporter 303 436 6.9E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 Gene3D G3DSA:1.10.287.380 525 609 1.6E-18 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 Pfam PF16326 ABC transporter C-terminal domain 536 604 5.4E-16 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 SUPERFAMILY SSF52540 6 200 2.71E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 ProSitePatterns PS00211 ABC transporters family signature. 408 422 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 Pfam PF12848 ABC transporter 191 266 4.0E-10 T 11-10-2018 IPR032781 ABC-transporter extension domain APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 SMART SM00382 311 482 4.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_04290 e45604f3bfba3e319d5b4421c1b6bbc1 611 SMART SM00382 31 197 5.5E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_16495 25384010f0082bb05ac8d9b9dd4e3eeb 169 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 48 162 5.0E-22 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 APT56_16495 25384010f0082bb05ac8d9b9dd4e3eeb 169 SUPERFAMILY SSF54637 41 161 7.47E-33 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_16495 25384010f0082bb05ac8d9b9dd4e3eeb 169 Gene3D G3DSA:3.10.129.10 29 167 6.0E-36 T 11-10-2018 APT56_16495 25384010f0082bb05ac8d9b9dd4e3eeb 169 Pfam PF03061 Thioesterase superfamily 77 154 1.1E-13 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_22080 6568b058a896e59eedda0f1cdd6e4431 177 PRINTS PR00598 Bacterial regulatory protein MarR family signature 101 117 1.3E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_22080 6568b058a896e59eedda0f1cdd6e4431 177 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 97 1.3E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_22080 6568b058a896e59eedda0f1cdd6e4431 177 PRINTS PR00598 Bacterial regulatory protein MarR family signature 131 151 1.3E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_22080 6568b058a896e59eedda0f1cdd6e4431 177 SMART SM00347 41 141 1.3E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_22080 6568b058a896e59eedda0f1cdd6e4431 177 ProSitePatterns PS01117 MarR-type HTH domain signature. 80 114 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_22080 6568b058a896e59eedda0f1cdd6e4431 177 Gene3D G3DSA:1.10.10.10 5 158 3.9E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22080 6568b058a896e59eedda0f1cdd6e4431 177 Pfam PF12802 MarR family 47 105 1.5E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_22080 6568b058a896e59eedda0f1cdd6e4431 177 SUPERFAMILY SSF46785 15 154 1.3E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 SUPERFAMILY SSF48179 162 292 4.53E-40 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 Gene3D G3DSA:3.40.50.720 1 162 1.1E-54 T 11-10-2018 APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 SUPERFAMILY SSF51735 3 162 2.44E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 291 3.2E-131 T 11-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 Gene3D G3DSA:1.10.1040.10 164 296 1.7E-45 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 290 1.4E-35 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 PIRSF PIRSF000103 1 296 2.3E-80 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT56_12410 91a2a4908e8d7862e862d02f4e8c1659 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 161 2.7E-51 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 APT56_27025 e611e481e5e9d47892b5fa43748eab1b 393 SUPERFAMILY SSF53335 24 385 5.47E-91 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_27025 e611e481e5e9d47892b5fa43748eab1b 393 Gene3D G3DSA:3.40.50.12710 8 393 3.9E-131 T 11-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 APT56_27025 e611e481e5e9d47892b5fa43748eab1b 393 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 89 321 4.5E-54 T 11-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 APT56_09275 4b3fd7dd7feb4e3def76aca39cc772d5 502 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 274 281 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_09275 4b3fd7dd7feb4e3def76aca39cc772d5 502 Gene3D G3DSA:3.40.605.10 37 496 1.4E-189 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_09275 4b3fd7dd7feb4e3def76aca39cc772d5 502 Pfam PF00171 Aldehyde dehydrogenase family 36 498 3.1E-175 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_09275 4b3fd7dd7feb4e3def76aca39cc772d5 502 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 302 313 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_09275 4b3fd7dd7feb4e3def76aca39cc772d5 502 SUPERFAMILY SSF53720 21 500 3.27E-172 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_09275 4b3fd7dd7feb4e3def76aca39cc772d5 502 Gene3D G3DSA:3.40.309.10 278 467 1.4E-189 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_05155 7f2dc9ed7e1d22d95042eead51b5b9a2 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 316 1.5E-22 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_05155 7f2dc9ed7e1d22d95042eead51b5b9a2 326 Gene3D G3DSA:3.40.50.300 1 325 8.1E-100 T 11-10-2018 APT56_05155 7f2dc9ed7e1d22d95042eead51b5b9a2 326 Pfam PF00005 ABC transporter 24 182 3.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_05155 7f2dc9ed7e1d22d95042eead51b5b9a2 326 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05155 7f2dc9ed7e1d22d95042eead51b5b9a2 326 SUPERFAMILY SSF52540 4 253 6.61E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05155 7f2dc9ed7e1d22d95042eead51b5b9a2 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 298 5.9E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_05155 7f2dc9ed7e1d22d95042eead51b5b9a2 326 SMART SM00382 33 232 1.4E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 SUPERFAMILY SSF47384 200 279 9.42E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 436 2.6E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 Gene3D G3DSA:1.10.287.130 167 269 1.9E-14 T 11-10-2018 APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 Gene3D G3DSA:3.30.565.10 274 437 1.0E-23 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 SMART SM00388 217 283 8.9E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 219 279 7.9E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 SMART SM00387 324 439 1.1E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 SUPERFAMILY SSF55874 273 435 1.19E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 414 7.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 371 7.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24605 56d7819d0aa4fa81399a91d29821978a 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 436 7.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 255 4.6E-57 T 11-10-2018 APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 Gene3D G3DSA:3.40.50.720 1 255 8.2E-71 T 11-10-2018 APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 SUPERFAMILY SSF51735 6 255 3.44E-71 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 5.0E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 5.0E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 5.0E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 5.1E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 5.1E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.1E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.1E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.1E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19565 ab47caf7881b6f4a8457f2d77e8a50dc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.1E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20315 699ebd9300252885105115aabbaeb5cb 362 Pfam PF09375 Imelysin 43 339 2.3E-35 T 11-10-2018 IPR018976 Imelysin-like domain APT56_20315 699ebd9300252885105115aabbaeb5cb 362 Gene3D G3DSA:1.20.1420.20 25 362 2.2E-72 T 11-10-2018 IPR038352 Imelysin-like domain superfamily APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 SUPERFAMILY SSF54631 274 405 3.32E-10 T 11-10-2018 APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 Gene3D G3DSA:3.10.580.10 271 394 5.8E-8 T 11-10-2018 APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 SUPERFAMILY SSF141868 4 233 1.7E-51 T 11-10-2018 IPR035919 EAL domain superfamily APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 SMART SM00267 389 578 1.9E-5 T 11-10-2018 IPR000160 GGDEF domain APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 Gene3D G3DSA:3.30.70.270 395 572 1.3E-18 T 11-10-2018 APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 SMART SM00052 1 238 3.7E-22 T 11-10-2018 IPR001633 EAL domain APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 Pfam PF00990 Diguanylate cyclase, GGDEF domain 405 501 7.9E-12 T 11-10-2018 IPR000160 GGDEF domain APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 SUPERFAMILY SSF55073 406 503 5.81E-17 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 Pfam PF00571 CBS domain 284 317 3.9E-5 T 11-10-2018 IPR000644 CBS domain APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 Gene3D G3DSA:3.20.20.450 3 245 7.0E-55 T 11-10-2018 IPR035919 EAL domain superfamily APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 Pfam PF00563 EAL domain 6 233 9.7E-45 T 11-10-2018 IPR001633 EAL domain APT56_14835 25ff47d4f520a7ea1a36ee56b2a719de 589 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 423 495 3.2E-11 T 11-10-2018 IPR000160 GGDEF domain APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 254 388 2.0E-19 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 Gene3D G3DSA:1.10.540.10 29 135 7.3E-25 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 Gene3D G3DSA:1.20.140.10 237 411 1.0E-55 T 11-10-2018 APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 SUPERFAMILY SSF47203 251 412 5.64E-23 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 PIRSF PIRSF016578 16 409 8.2E-30 T 11-10-2018 APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 Gene3D G3DSA:2.40.110.10 137 236 2.7E-29 T 11-10-2018 APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 SUPERFAMILY SSF56645 34 237 1.57E-47 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 22 413 1.2E-184 T 11-10-2018 IPR023922 Sulphate-starvation-induced SfnB APT56_01830 5a6285d82c62015d057d0f6507c1bafe 413 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 35 134 4.4E-12 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 Pfam PF03466 LysR substrate binding domain 87 285 9.7E-43 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 SUPERFAMILY SSF46785 1 84 8.68E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.9E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.9E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.9E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.5E-23 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 Gene3D G3DSA:3.40.190.10 164 269 5.7E-57 T 11-10-2018 APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 Gene3D G3DSA:1.10.10.10 1 90 8.0E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 Gene3D G3DSA:3.40.190.10 91 286 5.7E-57 T 11-10-2018 APT56_25675 800ddd04294f2e03da0ffcb3a7969180 292 SUPERFAMILY SSF53850 89 284 1.9E-37 T 11-10-2018 APT56_23850 b9ad7abe5891f4c41afb3247c07a2d18 400 PRINTS PR01035 Tetracycline resistance protein signature 259 279 3.9E-14 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23850 b9ad7abe5891f4c41afb3247c07a2d18 400 PRINTS PR01035 Tetracycline resistance protein signature 150 172 3.9E-14 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23850 b9ad7abe5891f4c41afb3247c07a2d18 400 PRINTS PR01035 Tetracycline resistance protein signature 23 39 3.9E-14 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23850 b9ad7abe5891f4c41afb3247c07a2d18 400 PRINTS PR01035 Tetracycline resistance protein signature 346 369 3.9E-14 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23850 b9ad7abe5891f4c41afb3247c07a2d18 400 PRINTS PR01035 Tetracycline resistance protein signature 311 331 3.9E-14 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23850 b9ad7abe5891f4c41afb3247c07a2d18 400 SUPERFAMILY SSF103473 12 393 2.35E-43 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_23850 b9ad7abe5891f4c41afb3247c07a2d18 400 Pfam PF07690 Major Facilitator Superfamily 23 233 1.1E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_23850 b9ad7abe5891f4c41afb3247c07a2d18 400 Gene3D G3DSA:1.20.1250.20 8 395 6.3E-44 T 11-10-2018 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.1E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 149 3.2E-15 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 1.5E-32 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 SUPERFAMILY SSF50465 304 396 9.5E-36 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.217 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 SUPERFAMILY SSF50447 207 303 1.89E-30 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 Gene3D G3DSA:2.40.30.10 208 336 4.1E-51 T 11-10-2018 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 Gene3D G3DSA:3.40.50.300 1 205 1.3E-70 T 11-10-2018 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 SUPERFAMILY SSF52540 5 221 2.17E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 Gene3D G3DSA:2.40.30.10 340 395 3.3E-28 T 11-10-2018 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 3.9E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT56_00050 86a693bf04ddb7c42bfeea509aff8812 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 4.3E-226 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 8.3E-25 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.1E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 149 3.2E-15 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 1.5E-32 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 SUPERFAMILY SSF50465 304 396 9.5E-36 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.217 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 SUPERFAMILY SSF50447 207 303 1.89E-30 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 Gene3D G3DSA:2.40.30.10 208 336 4.1E-51 T 11-10-2018 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 Gene3D G3DSA:3.40.50.300 1 205 1.3E-70 T 11-10-2018 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 SUPERFAMILY SSF52540 5 221 2.17E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 Gene3D G3DSA:2.40.30.10 340 395 3.3E-28 T 11-10-2018 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 3.9E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT56_27855 86a693bf04ddb7c42bfeea509aff8812 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 4.3E-226 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 SUPERFAMILY SSF158832 17 339 2.62E-110 T 11-10-2018 APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 SUPERFAMILY SSF50249 657 742 3.36E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 SUPERFAMILY SSF47781 489 577 1.78E-28 T 11-10-2018 IPR010994 RuvA domain 2-like APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Pfam PF00575 S1 RNA binding domain 670 739 6.6E-22 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Pfam PF09371 Tex-like protein N-terminal domain 23 206 2.9E-67 T 11-10-2018 IPR018974 Tex-like protein, N-terminal APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Gene3D G3DSA:1.10.3500.10 126 517 3.7E-149 T 11-10-2018 IPR023323 Tex-like domain superfamily APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 SMART SM00316 668 739 1.3E-24 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 SUPERFAMILY SSF47781 579 651 6.67E-19 T 11-10-2018 IPR010994 RuvA domain 2-like APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Gene3D G3DSA:2.40.50.140 650 744 2.9E-29 T 11-10-2018 APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Pfam PF12836 Helix-hairpin-helix motif 510 574 7.6E-27 T 11-10-2018 APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Gene3D G3DSA:1.10.10.650 14 123 5.4E-39 T 11-10-2018 IPR023319 Tex-like protein, HTH domain superfamily APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 SMART SM00732 344 443 7.1E-39 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Pfam PF16921 Tex protein YqgF-like domain 344 470 1.1E-52 T 11-10-2018 IPR032639 Tex protein, YqgF-like domain APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 SUPERFAMILY SSF53098 340 488 3.57E-52 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Gene3D G3DSA:3.30.420.140 343 470 3.7E-149 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 APT56_07305 1c78a244a091a351be4f72b8daffc7c1 791 Gene3D G3DSA:1.10.150.310 518 649 1.7E-49 T 11-10-2018 APT56_25075 c5b62281a7c4972dcb9ff03285008a0e 420 SUPERFAMILY SSF55031 216 334 7.5E-22 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_25075 c5b62281a7c4972dcb9ff03285008a0e 420 SUPERFAMILY SSF53187 5 415 3.01E-86 T 11-10-2018 APT56_25075 c5b62281a7c4972dcb9ff03285008a0e 420 PIRSF PIRSF001235 8 419 2.2E-136 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 APT56_25075 c5b62281a7c4972dcb9ff03285008a0e 420 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 11 414 3.5E-113 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 APT56_25075 c5b62281a7c4972dcb9ff03285008a0e 420 Gene3D G3DSA:3.40.630.10 27 409 7.7E-131 T 11-10-2018 APT56_25075 c5b62281a7c4972dcb9ff03285008a0e 420 Pfam PF01546 Peptidase family M20/M25/M40 81 412 1.1E-28 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_25075 c5b62281a7c4972dcb9ff03285008a0e 420 Gene3D G3DSA:3.30.70.360 216 333 7.7E-131 T 11-10-2018 APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 Gene3D G3DSA:3.40.640.10 131 493 2.3E-115 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 SMART SM00345 28 87 1.2E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 1.5E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 1.5E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 87 4.4E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 Gene3D G3DSA:1.10.10.10 22 127 5.4E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 SUPERFAMILY SSF46785 21 89 4.24E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 Pfam PF00155 Aminotransferase class I and II 154 419 2.6E-21 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_17590 ae0da589b5d3fbbbea77d4fa567dc686 502 SUPERFAMILY SSF53383 133 499 2.74E-86 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 SUPERFAMILY SSF51126 171 570 4.87E-43 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 SUPERFAMILY SSF103515 598 903 9.15E-45 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 Gene3D G3DSA:2.40.128.130 590 903 1.6E-69 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 SMART SM00869 630 892 6.8E-39 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 455 903 2.0E-106 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 Pfam PF03797 Autotransporter beta-domain 633 882 2.9E-41 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 Pfam PF12951 Passenger-associated-transport-repeat 389 419 1.1E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 TIGRFAM TIGR04393 rpt_T5SS_PEPC: T5SS/PEP-CTERM-associated repeat 135 184 9.5E-13 T 11-10-2018 IPR030895 T5SS/PEP-CTERM-associated repeat APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 TIGRFAM TIGR04393 rpt_T5SS_PEPC: T5SS/PEP-CTERM-associated repeat 186 233 3.7E-16 T 11-10-2018 IPR030895 T5SS/PEP-CTERM-associated repeat APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 TIGRFAM TIGR04393 rpt_T5SS_PEPC: T5SS/PEP-CTERM-associated repeat 246 293 1.0E-8 T 11-10-2018 IPR030895 T5SS/PEP-CTERM-associated repeat APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 TIGRFAM TIGR04393 rpt_T5SS_PEPC: T5SS/PEP-CTERM-associated repeat 49 75 4.1E-6 T 11-10-2018 IPR030895 T5SS/PEP-CTERM-associated repeat APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 Pfam PF03212 Pertactin 472 567 2.5E-6 T 11-10-2018 IPR004899 Pertactin, central region APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 Gene3D G3DSA:2.160.20.20 429 570 5.2E-38 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily APT56_19305 7fa3ca15cafcd2d7e0e104215d12a065 903 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 390 420 5.7E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_07060 8b11bf77cdfcc01e4e90f7e92c6afa0d 550 Pfam PF06418 CTP synthase N-terminus 3 270 7.8E-125 T 11-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APT56_07060 8b11bf77cdfcc01e4e90f7e92c6afa0d 550 TIGRFAM TIGR00337 PyrG: CTP synthase 1 538 3.6E-241 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APT56_07060 8b11bf77cdfcc01e4e90f7e92c6afa0d 550 Hamap MF_01227 CTP synthase [pyrG]. 2 543 51.107 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APT56_07060 8b11bf77cdfcc01e4e90f7e92c6afa0d 550 SUPERFAMILY SSF52540 2 270 8.85E-121 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07060 8b11bf77cdfcc01e4e90f7e92c6afa0d 550 Pfam PF00117 Glutamine amidotransferase class-I 305 537 6.3E-57 T 11-10-2018 IPR017926 Glutamine amidotransferase APT56_07060 8b11bf77cdfcc01e4e90f7e92c6afa0d 550 SUPERFAMILY SSF52317 292 544 3.73E-87 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_07060 8b11bf77cdfcc01e4e90f7e92c6afa0d 550 Gene3D G3DSA:3.40.50.300 1 289 3.3E-130 T 11-10-2018 APT56_07060 8b11bf77cdfcc01e4e90f7e92c6afa0d 550 Gene3D G3DSA:3.40.50.880 290 548 1.0E-102 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_09710 ec38282082c732bb451e302404eef49c 479 SMART SM00388 238 305 6.6E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_09710 ec38282082c732bb451e302404eef49c 479 SUPERFAMILY SSF55874 295 464 3.93E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_09710 ec38282082c732bb451e302404eef49c 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 2.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_09710 ec38282082c732bb451e302404eef49c 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 459 2.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_09710 ec38282082c732bb451e302404eef49c 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 2.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_09710 ec38282082c732bb451e302404eef49c 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 2.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_09710 ec38282082c732bb451e302404eef49c 479 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 303 2.1E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_09710 ec38282082c732bb451e302404eef49c 479 SMART SM00387 348 462 9.7E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_09710 ec38282082c732bb451e302404eef49c 479 Gene3D G3DSA:1.10.287.130 226 305 1.5E-10 T 11-10-2018 APT56_09710 ec38282082c732bb451e302404eef49c 479 SUPERFAMILY SSF47384 230 303 1.51E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_09710 ec38282082c732bb451e302404eef49c 479 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 460 8.3E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_09710 ec38282082c732bb451e302404eef49c 479 Gene3D G3DSA:3.30.565.10 310 464 1.1E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_01505 cd1a630d145fb939f9554b3d00a1c347 343 SUPERFAMILY SSF51726 8 341 1.11E-67 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APT56_01505 cd1a630d145fb939f9554b3d00a1c347 343 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 6 330 1.4E-36 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT56_01505 cd1a630d145fb939f9554b3d00a1c347 343 PIRSF PIRSF005632 1 343 3.0E-201 T 11-10-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit APT56_01505 cd1a630d145fb939f9554b3d00a1c347 343 Gene3D G3DSA:3.20.20.210 1 343 8.2E-134 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Gene3D G3DSA:2.30.30.40 562 690 1.6E-39 T 11-10-2018 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Pfam PF09078 CheY binding 183 245 1.8E-25 T 11-10-2018 IPR015162 CheY binding APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 425 561 4.2E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SMART SM00260 554 694 1.1E-41 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Pfam PF01627 Hpt domain 10 110 1.2E-17 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Pfam PF01584 CheW-like domain 567 695 2.5E-27 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SUPERFAMILY SSF55052 182 247 1.49E-20 T 11-10-2018 IPR035891 CheY-binding domain of CheA APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 315 377 2.2E-16 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Gene3D G3DSA:2.40.50.180 585 649 1.6E-39 T 11-10-2018 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 540 3.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 481 3.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 PRINTS PR00344 Bacterial sensor protein C-terminal signature 546 559 3.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 516 3.9E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SUPERFAMILY SSF47226 7 129 8.01E-31 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SUPERFAMILY SSF47384 315 378 2.28E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SMART SM00387 422 562 1.3E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SUPERFAMILY SSF55874 380 560 3.67E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Gene3D G3DSA:1.20.120.160 4 144 2.7E-43 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Gene3D G3DSA:3.30.565.10 378 561 3.9E-53 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Gene3D G3DSA:1.10.287.560 314 377 2.4E-16 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SMART SM01231 314 377 5.8E-21 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SUPERFAMILY SSF50341 561 693 1.03E-31 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 Gene3D G3DSA:3.30.70.400 178 248 9.1E-18 T 11-10-2018 IPR035891 CheY-binding domain of CheA APT56_11910 cfb56b6e522974d8671d1e140f70999e 709 SMART SM00073 7 105 6.7E-29 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 Pfam PF02203 Tar ligand binding domain homologue 1 168 4.0E-18 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 483 6.4E-56 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 4.5E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 289 318 4.5E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 443 472 4.5E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 395 424 4.5E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 393 4.5E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 Gene3D G3DSA:1.20.120.30 21 189 8.4E-9 T 11-10-2018 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 SUPERFAMILY SSF58104 235 520 1.19E-77 T 11-10-2018 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 Gene3D G3DSA:1.10.287.950 215 517 9.7E-95 T 11-10-2018 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 SUPERFAMILY SSF47170 27 177 3.92E-13 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 Pfam PF00672 HAMP domain 215 263 6.3E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 SMART SM00283 268 515 8.2E-98 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12040 3c96b322d3b6b77c26a8626edb262ca3 626 SMART SM00304 215 267 3.7E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_02295 f2417e93f5caa0ed5d4a46737bf39cee 537 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 70 91 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site APT56_02295 f2417e93f5caa0ed5d4a46737bf39cee 537 Gene3D G3DSA:3.10.105.10 287 515 4.4E-125 T 11-10-2018 APT56_02295 f2417e93f5caa0ed5d4a46737bf39cee 537 Gene3D G3DSA:3.90.76.10 55 181 4.4E-125 T 11-10-2018 APT56_02295 f2417e93f5caa0ed5d4a46737bf39cee 537 PIRSF PIRSF002741 11 523 4.9E-92 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_02295 f2417e93f5caa0ed5d4a46737bf39cee 537 SUPERFAMILY SSF53850 17 517 4.34E-125 T 11-10-2018 APT56_02295 f2417e93f5caa0ed5d4a46737bf39cee 537 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 64 448 5.8E-88 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_02295 f2417e93f5caa0ed5d4a46737bf39cee 537 Gene3D G3DSA:3.40.190.10 29 286 4.4E-125 T 11-10-2018 APT56_19020 1ef869155f03f00fbc12e30ca7168932 393 Gene3D G3DSA:3.40.47.10 6 390 2.7E-105 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_19020 1ef869155f03f00fbc12e30ca7168932 393 Pfam PF02803 Thiolase, C-terminal domain 264 363 6.2E-11 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_19020 1ef869155f03f00fbc12e30ca7168932 393 SUPERFAMILY SSF53901 22 377 8.49E-44 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_19020 1ef869155f03f00fbc12e30ca7168932 393 Pfam PF00108 Thiolase, N-terminal domain 7 229 2.9E-25 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_19020 1ef869155f03f00fbc12e30ca7168932 393 PIRSF PIRSF000429 3 390 8.4E-62 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_25380 6f67d297df0bd7bff72886e28682cd1a 399 Pfam PF07690 Major Facilitator Superfamily 19 350 1.4E-32 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_25380 6f67d297df0bd7bff72886e28682cd1a 399 SUPERFAMILY SSF103473 10 390 1.44E-55 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_25380 6f67d297df0bd7bff72886e28682cd1a 399 Gene3D G3DSA:1.20.1250.20 13 387 9.2E-44 T 11-10-2018 APT56_26400 0a94ca1aea1e4fcf9632e3b82f6ed6ef 85 Gene3D G3DSA:3.40.30.10 1 85 6.4E-29 T 11-10-2018 APT56_26400 0a94ca1aea1e4fcf9632e3b82f6ed6ef 85 Pfam PF00462 Glutaredoxin 4 64 4.6E-22 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APT56_26400 0a94ca1aea1e4fcf9632e3b82f6ed6ef 85 PRINTS PR00160 Glutaredoxin signature 61 74 2.6E-19 T 11-10-2018 IPR014025 Glutaredoxin subgroup APT56_26400 0a94ca1aea1e4fcf9632e3b82f6ed6ef 85 PRINTS PR00160 Glutaredoxin signature 47 60 2.6E-19 T 11-10-2018 IPR014025 Glutaredoxin subgroup APT56_26400 0a94ca1aea1e4fcf9632e3b82f6ed6ef 85 PRINTS PR00160 Glutaredoxin signature 4 22 2.6E-19 T 11-10-2018 IPR014025 Glutaredoxin subgroup APT56_26400 0a94ca1aea1e4fcf9632e3b82f6ed6ef 85 SUPERFAMILY SSF52833 1 84 1.77E-29 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_26400 0a94ca1aea1e4fcf9632e3b82f6ed6ef 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 83 1.1E-35 T 11-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 APT56_26400 0a94ca1aea1e4fcf9632e3b82f6ed6ef 85 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 APT56_23390 60d9cc14eb9589470a5661557e82c77f 295 Pfam PF00892 EamA-like transporter family 151 284 9.9E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_23390 60d9cc14eb9589470a5661557e82c77f 295 Pfam PF00892 EamA-like transporter family 6 138 2.2E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_23390 60d9cc14eb9589470a5661557e82c77f 295 SUPERFAMILY SSF103481 188 288 1.44E-14 T 11-10-2018 APT56_23390 60d9cc14eb9589470a5661557e82c77f 295 SUPERFAMILY SSF103481 39 141 1.7E-12 T 11-10-2018 APT56_09405 82a332a4e8db8782f5cce775ee16f657 290 SUPERFAMILY SSF141673 7 134 5.49E-39 T 11-10-2018 APT56_09405 82a332a4e8db8782f5cce775ee16f657 290 SUPERFAMILY SSF50800 1 288 6.28E-18 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily APT56_09405 82a332a4e8db8782f5cce775ee16f657 290 Pfam PF03476 MOSC N-terminal beta barrel domain 2 120 1.8E-32 T 11-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 APT56_09405 82a332a4e8db8782f5cce775ee16f657 290 Pfam PF03473 MOSC domain 159 285 4.2E-28 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 Gene3D G3DSA:3.40.50.150 102 286 1.6E-48 T 11-10-2018 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 11 296 8.0E-73 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 202 208 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 Gene3D G3DSA:1.10.8.10 11 101 1.3E-6 T 11-10-2018 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 Pfam PF05175 Methyltransferase small domain 130 213 4.7E-16 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 9 293 1.2E-123 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 PIRSF PIRSF037167 1 298 3.9E-130 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 2 298 52.787 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 APT56_17920 5be365ce577979eae40423ba0eeeb620 298 SUPERFAMILY SSF53335 12 265 2.15E-53 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_09860 f00f2b188ed69cddc6529ebfbbad1309 315 Pfam PF07859 alpha/beta hydrolase fold 85 287 5.9E-13 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 APT56_09860 f00f2b188ed69cddc6529ebfbbad1309 315 SUPERFAMILY SSF53474 69 303 9.18E-34 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_09860 f00f2b188ed69cddc6529ebfbbad1309 315 Gene3D G3DSA:3.40.50.1820 63 314 2.5E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_24625 a111343d5df5fd021c12a800c64994cb 463 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 375 451 8.8E-10 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 SUPERFAMILY SSF53738 156 257 1.84E-31 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 SUPERFAMILY SSF55957 368 458 9.68E-19 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 Gene3D G3DSA:3.40.120.10 1 147 1.1E-45 T 11-10-2018 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 Gene3D G3DSA:3.40.120.10 174 251 8.7E-33 T 11-10-2018 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 SUPERFAMILY SSF53738 259 356 1.81E-31 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 Gene3D G3DSA:3.30.310.50 370 463 1.3E-25 T 11-10-2018 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 356 1.1E-20 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 255 1.2E-26 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 SUPERFAMILY SSF53738 7 179 9.03E-37 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 250 7.8E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 99 113 7.8E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 206 219 7.8E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 172 191 7.8E-23 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 100 109 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 11 137 5.6E-33 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_24625 a111343d5df5fd021c12a800c64994cb 463 Gene3D G3DSA:3.40.120.10 252 369 9.7E-39 T 11-10-2018 APT56_27885 6dcea14c0a3df0942204f5566987d7dd 369 SMART SM00257 35 82 0.0046 T 11-10-2018 IPR018392 LysM domain APT56_27885 6dcea14c0a3df0942204f5566987d7dd 369 Gene3D G3DSA:2.60.120.1440 119 245 1.8E-5 T 11-10-2018 APT56_27885 6dcea14c0a3df0942204f5566987d7dd 369 Pfam PF04773 FecR protein 120 221 2.5E-16 T 11-10-2018 IPR006860 FecR protein APT56_27885 6dcea14c0a3df0942204f5566987d7dd 369 PIRSF PIRSF029644 1 364 5.1E-104 T 11-10-2018 IPR016930 Uncharacterised conserved protein UCP029644, LysM, PA4035 APT56_27885 6dcea14c0a3df0942204f5566987d7dd 369 Pfam PF01476 LysM domain 36 82 3.9E-8 T 11-10-2018 IPR018392 LysM domain APT56_27885 6dcea14c0a3df0942204f5566987d7dd 369 SUPERFAMILY SSF54106 34 82 1.26E-6 T 11-10-2018 APT56_27885 6dcea14c0a3df0942204f5566987d7dd 369 Gene3D G3DSA:3.10.350.10 20 92 5.6E-8 T 11-10-2018 IPR036779 LysM domain superfamily APT56_01990 bdd97816af6cbbc002849fb566266157 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01990 bdd97816af6cbbc002849fb566266157 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01990 bdd97816af6cbbc002849fb566266157 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01990 bdd97816af6cbbc002849fb566266157 309 SUPERFAMILY SSF46785 8 90 1.53E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01990 bdd97816af6cbbc002849fb566266157 309 Gene3D G3DSA:3.40.190.10 107 292 1.7E-44 T 11-10-2018 APT56_01990 bdd97816af6cbbc002849fb566266157 309 SUPERFAMILY SSF53850 96 298 6.88E-30 T 11-10-2018 APT56_01990 bdd97816af6cbbc002849fb566266157 309 Gene3D G3DSA:1.10.10.10 11 97 2.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01990 bdd97816af6cbbc002849fb566266157 309 Gene3D G3DSA:3.40.190.10 166 265 1.7E-44 T 11-10-2018 APT56_01990 bdd97816af6cbbc002849fb566266157 309 Pfam PF03466 LysR substrate binding domain 96 296 2.6E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_01990 bdd97816af6cbbc002849fb566266157 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 5.7E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25200 54b37539469de3bb2dab211b2d13669d 328 PIRSF PIRSF017082 1 328 6.6E-93 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_25200 54b37539469de3bb2dab211b2d13669d 328 SUPERFAMILY SSF53850 92 283 8.69E-19 T 11-10-2018 APT56_25200 54b37539469de3bb2dab211b2d13669d 328 Gene3D G3DSA:3.40.190.10 130 253 1.5E-115 T 11-10-2018 APT56_25200 54b37539469de3bb2dab211b2d13669d 328 Gene3D G3DSA:3.40.190.150 32 318 1.5E-115 T 11-10-2018 APT56_25200 54b37539469de3bb2dab211b2d13669d 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 324 7.7E-89 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18100 7cae3a7b8df5ae43d6d094e2e0e49fe3 284 Gene3D G3DSA:2.40.50.100 24 90 5.8E-13 T 11-10-2018 APT56_18100 7cae3a7b8df5ae43d6d094e2e0e49fe3 284 SUPERFAMILY SSF111369 20 159 9.15E-21 T 11-10-2018 APT56_18100 7cae3a7b8df5ae43d6d094e2e0e49fe3 284 Gene3D G3DSA:2.40.30.170 147 269 1.2E-24 T 11-10-2018 APT56_18100 7cae3a7b8df5ae43d6d094e2e0e49fe3 284 Pfam PF13533 Biotin-lipoyl like 25 73 1.4E-15 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_18100 7cae3a7b8df5ae43d6d094e2e0e49fe3 284 Pfam PF13437 HlyD family secretion protein 133 217 9.6E-9 T 11-10-2018 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Gene3D G3DSA:3.30.450.270 311 489 2.8E-148 T 11-10-2018 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 SMART SM00065 142 319 1.3E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 SMART SM00388 506 568 1.2E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 613 722 3.8E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 SUPERFAMILY SSF55874 558 721 1.88E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Gene3D G3DSA:1.10.287.130 494 569 5.6E-13 T 11-10-2018 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 SUPERFAMILY SSF55785 10 120 4.6E-23 T 11-10-2018 IPR035965 PAS domain superfamily APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Gene3D G3DSA:3.30.450.40 13 472 2.8E-148 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Pfam PF00360 Phytochrome region 324 499 8.0E-37 T 11-10-2018 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 SUPERFAMILY SSF55781 129 306 1.5E-54 T 11-10-2018 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 SMART SM00387 612 723 1.1E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 PRINTS PR01033 Phytochrome signature 243 264 5.2E-17 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 PRINTS PR01033 Phytochrome signature 425 444 5.2E-17 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 PRINTS PR01033 Phytochrome signature 459 477 5.2E-17 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 PRINTS PR01033 Phytochrome signature 157 176 5.2E-17 T 11-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 SUPERFAMILY SSF55781 293 493 1.37E-36 T 11-10-2018 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Pfam PF08446 PAS fold 16 116 2.3E-9 T 11-10-2018 IPR013654 PAS fold-2 GO:0006355 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Gene3D G3DSA:3.30.450.20 23 244 2.8E-148 T 11-10-2018 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Pfam PF00512 His Kinase A (phospho-acceptor) domain 507 568 1.1E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Pfam PF01590 GAF domain 143 306 1.7E-17 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 Gene3D G3DSA:3.30.565.10 572 721 2.2E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_21975 c50eebe5165d341a6e5a4e1232075de5 735 SUPERFAMILY SSF47384 496 567 1.22E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_06615 3bea93ef30ddd3a5c7ede03cf904b180 336 SUPERFAMILY SSF53850 32 328 3.98E-77 T 11-10-2018 APT56_06615 3bea93ef30ddd3a5c7ede03cf904b180 336 Gene3D G3DSA:3.40.190.100 117 250 7.8E-45 T 11-10-2018 APT56_06615 3bea93ef30ddd3a5c7ede03cf904b180 336 Gene3D G3DSA:3.40.190.10 36 321 7.8E-45 T 11-10-2018 APT56_06615 3bea93ef30ddd3a5c7ede03cf904b180 336 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 35 312 2.4E-66 T 11-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 APT56_02215 e4915c454fc907169874ea659fd6d76d 353 SUPERFAMILY SSF53383 13 351 2.31E-96 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_02215 e4915c454fc907169874ea659fd6d76d 353 PIRSF PIRSF038940 11 353 2.6E-156 T 11-10-2018 IPR026273 Low specificity L-threonine aldolase GO:0004793|GO:0006567 KEGG: 00260+4.1.2.48 APT56_02215 e4915c454fc907169874ea659fd6d76d 353 Gene3D G3DSA:3.90.1150.10 16 344 2.5E-134 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_02215 e4915c454fc907169874ea659fd6d76d 353 Gene3D G3DSA:3.40.640.10 23 262 2.5E-134 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_02215 e4915c454fc907169874ea659fd6d76d 353 Pfam PF01212 Beta-eliminating lyase 14 298 8.9E-59 T 11-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 APT56_10000 da3f548fde55656bbc598f74604128f3 412 PRINTS PR00342 Rhesus blood group protein signature 205 223 4.8E-7 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 APT56_10000 da3f548fde55656bbc598f74604128f3 412 PRINTS PR00342 Rhesus blood group protein signature 291 309 4.8E-7 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 APT56_10000 da3f548fde55656bbc598f74604128f3 412 PRINTS PR00342 Rhesus blood group protein signature 105 121 4.8E-7 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 APT56_10000 da3f548fde55656bbc598f74604128f3 412 PRINTS PR00342 Rhesus blood group protein signature 236 258 4.8E-7 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 APT56_10000 da3f548fde55656bbc598f74604128f3 412 ProSitePatterns PS01219 Ammonium transporters signature. 166 191 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 APT56_10000 da3f548fde55656bbc598f74604128f3 412 Pfam PF00909 Ammonium Transporter Family 8 410 1.6E-121 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 APT56_10000 da3f548fde55656bbc598f74604128f3 412 Gene3D G3DSA:1.10.3430.10 1 412 2.5E-136 T 11-10-2018 IPR029020 Ammonium/urea transporter APT56_10000 da3f548fde55656bbc598f74604128f3 412 TIGRFAM TIGR00836 amt: ammonium transporter 5 410 1.4E-134 T 11-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 APT56_10000 da3f548fde55656bbc598f74604128f3 412 SUPERFAMILY SSF111352 2 391 9.02E-126 T 11-10-2018 APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 SUPERFAMILY SSF52540 11 261 2.02E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 273 3.7E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 Pfam PF00005 ABC transporter 32 189 9.1E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 Pfam PF00005 ABC transporter 326 480 6.4E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 SUPERFAMILY SSF52540 298 550 3.3E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 SMART SM00382 334 529 1.3E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 SMART SM00382 40 239 1.2E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 ProSitePatterns PS00211 ABC transporters family signature. 452 466 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 Gene3D G3DSA:3.40.50.300 296 562 1.4E-86 T 11-10-2018 APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 Gene3D G3DSA:3.40.50.300 9 295 3.8E-81 T 11-10-2018 APT56_19825 b3dfd699fb7aa19271a17e15ade2352a 564 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 Gene3D G3DSA:3.50.50.60 2 219 9.7E-86 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 Gene3D G3DSA:3.50.50.60 296 459 8.0E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 Pfam PF01134 Glucose inhibited division protein A 8 399 1.9E-165 T 11-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 369 392 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 Gene3D G3DSA:1.10.10.1800 460 558 1.1E-27 T 11-10-2018 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 274 288 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 632 42.763 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 Pfam PF13932 GidA associated domain 403 624 2.2E-76 T 11-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 SMART SM01228 554 625 6.6E-43 T 11-10-2018 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 629 1.7E-270 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 Gene3D G3DSA:1.10.150.570 578 631 1.0E-24 T 11-10-2018 APT56_00160 8cd6c451030777d34f97c7ea316f7c13 639 SUPERFAMILY SSF51905 6 262 1.47E-48 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_21505 77b2993bbc2f07e99854c5da874c7e42 352 Pfam PF06144 DNA polymerase III, delta subunit 25 198 7.3E-24 T 11-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 APT56_21505 77b2993bbc2f07e99854c5da874c7e42 352 Gene3D G3DSA:1.10.8.60 152 221 4.1E-26 T 11-10-2018 APT56_21505 77b2993bbc2f07e99854c5da874c7e42 352 Gene3D G3DSA:3.40.50.300 3 148 1.0E-41 T 11-10-2018 APT56_21505 77b2993bbc2f07e99854c5da874c7e42 352 SUPERFAMILY SSF48019 221 349 1.19E-24 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APT56_21505 77b2993bbc2f07e99854c5da874c7e42 352 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 21 345 6.1E-75 T 11-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 APT56_21505 77b2993bbc2f07e99854c5da874c7e42 352 SUPERFAMILY SSF52540 13 219 4.36E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21505 77b2993bbc2f07e99854c5da874c7e42 352 Gene3D G3DSA:1.20.272.10 223 350 4.4E-23 T 11-10-2018 APT56_13015 9857746ef7720baa331bca7a69d01a7b 260 Gene3D G3DSA:1.10.3720.10 69 257 1.2E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13015 9857746ef7720baa331bca7a69d01a7b 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 257 7.2E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13015 9857746ef7720baa331bca7a69d01a7b 260 SUPERFAMILY SSF161098 67 249 6.41E-29 T 11-10-2018 IPR035906 MetI-like superfamily APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 Pfam PF00072 Response regulator receiver domain 925 1032 1.7E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 Gene3D G3DSA:3.30.565.10 743 901 4.7E-44 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 Gene3D G3DSA:3.40.50.12740 922 1130 4.2E-31 T 11-10-2018 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 791 898 2.3E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 SMART SM00448 923 1034 3.3E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 SUPERFAMILY SSF55874 734 897 1.96E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 SUPERFAMILY SSF52172 921 1048 1.29E-31 T 11-10-2018 IPR011006 CheY-like superfamily APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 Gene3D G3DSA:1.10.287.130 642 742 1.1E-23 T 11-10-2018 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 SUPERFAMILY SSF47384 664 745 1.55E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 SMART SM00387 790 901 2.4E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 Pfam PF00512 His Kinase A (phospho-acceptor) domain 678 744 1.5E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 PRINTS PR00344 Bacterial sensor protein C-terminal signature 826 840 5.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 PRINTS PR00344 Bacterial sensor protein C-terminal signature 861 879 5.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 PRINTS PR00344 Bacterial sensor protein C-terminal signature 885 898 5.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 Gene3D G3DSA:1.10.4160.10 19 477 6.8E-15 T 11-10-2018 IPR038271 Purine-cytosine permease superfamily APT56_25000 0a2fdcf7a100fbca08b45e3ba7fb07ce 1130 SMART SM00388 678 744 8.5E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20815 b37441ed02edbbed12f63146fe364a28 324 SUPERFAMILY SSF53850 115 283 4.48E-12 T 11-10-2018 APT56_20815 b37441ed02edbbed12f63146fe364a28 324 Gene3D G3DSA:3.40.190.10 126 249 7.2E-108 T 11-10-2018 APT56_20815 b37441ed02edbbed12f63146fe364a28 324 Gene3D G3DSA:3.40.190.150 29 314 7.2E-108 T 11-10-2018 APT56_20815 b37441ed02edbbed12f63146fe364a28 324 PIRSF PIRSF017082 2 324 2.3E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20815 b37441ed02edbbed12f63146fe364a28 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 320 3.0E-85 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_07265 cff1c5b191d42276c2b09a76f78d1d49 318 Gene3D G3DSA:2.60.120.1440 100 239 9.2E-7 T 11-10-2018 APT56_07265 cff1c5b191d42276c2b09a76f78d1d49 318 PIRSF PIRSF018266 2 316 1.4E-73 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_07265 cff1c5b191d42276c2b09a76f78d1d49 318 Pfam PF16220 Domain of unknown function (DUF4880) 13 54 9.7E-16 T 11-10-2018 IPR032623 FecR, N-terminal APT56_07265 cff1c5b191d42276c2b09a76f78d1d49 318 Pfam PF04773 FecR protein 111 203 6.0E-14 T 11-10-2018 IPR006860 FecR protein APT56_16835 d928a367d6a5d1073897599349447239 340 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 245 329 2.9E-26 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_16835 d928a367d6a5d1073897599349447239 340 Pfam PF00005 ABC transporter 38 195 3.5E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_16835 d928a367d6a5d1073897599349447239 340 SUPERFAMILY SSF52540 16 275 1.25E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_16835 d928a367d6a5d1073897599349447239 340 Gene3D G3DSA:3.40.50.300 16 337 3.4E-98 T 11-10-2018 APT56_16835 d928a367d6a5d1073897599349447239 340 SMART SM00382 46 253 9.7E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_16835 d928a367d6a5d1073897599349447239 340 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 247 311 7.9E-20 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_16835 d928a367d6a5d1073897599349447239 340 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 Gene3D G3DSA:3.40.50.720 2 259 2.4E-77 T 11-10-2018 APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 199 6.5E-4 T 11-10-2018 APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.1E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.1E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 1.1E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.1E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.1E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 1.1E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 255 3.5E-62 T 11-10-2018 APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 SUPERFAMILY SSF51735 10 257 1.56E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 1.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 1.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_08330 2f6e7a11cf1d344b75ccc4ce2c4687fd 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 1.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20055 858f88b7883130c6a09d939aa3093ff4 324 PIRSF PIRSF017082 2 323 3.0E-56 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20055 858f88b7883130c6a09d939aa3093ff4 324 SUPERFAMILY SSF53850 33 268 3.58E-7 T 11-10-2018 APT56_20055 858f88b7883130c6a09d939aa3093ff4 324 Gene3D G3DSA:3.40.190.10 126 248 5.7E-73 T 11-10-2018 APT56_20055 858f88b7883130c6a09d939aa3093ff4 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 317 3.6E-44 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20055 858f88b7883130c6a09d939aa3093ff4 324 Gene3D G3DSA:3.40.190.150 32 312 5.7E-73 T 11-10-2018 APT56_01055 ef089909141cffebd41b8c41267379e9 476 Pfam PF11067 Protein of unknown function (DUF2868) 161 454 1.9E-74 T 11-10-2018 IPR021296 Protein of unknown function DUF2868 APT56_14785 dc61d98dee236f354551c1f19e3ca131 378 TIGRFAM TIGR03073 release_rtcB: release factor H-coupled RctB family protein 12 367 1.3E-179 T 11-10-2018 IPR017510 Release factor H-coupled RctB family protein APT56_14785 dc61d98dee236f354551c1f19e3ca131 378 SUPERFAMILY SSF103365 4 372 1.57E-101 T 11-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 APT56_14785 dc61d98dee236f354551c1f19e3ca131 378 Pfam PF01139 tRNA-splicing ligase RtcB 125 372 1.5E-56 T 11-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 APT56_14785 dc61d98dee236f354551c1f19e3ca131 378 Pfam PF01139 tRNA-splicing ligase RtcB 29 103 5.3E-10 T 11-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 APT56_14785 dc61d98dee236f354551c1f19e3ca131 378 Gene3D G3DSA:3.90.1860.10 7 373 9.0E-87 T 11-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Gene3D G3DSA:1.10.287.130 477 559 1.4E-24 T 11-10-2018 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Gene3D G3DSA:3.30.565.10 560 725 1.1E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 SUPERFAMILY SSF47226 945 1079 5.89E-15 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Gene3D G3DSA:1.20.120.160 990 1085 3.8E-12 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 SMART SM00387 608 723 1.5E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Pfam PF01627 Hpt domain 1001 1080 1.3E-8 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Gene3D G3DSA:3.30.450.20 367 476 4.2E-6 T 11-10-2018 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 SUPERFAMILY SSF47384 480 562 1.0E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 SUPERFAMILY SSF52172 850 967 2.7E-35 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 608 722 9.7E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 SMART SM00388 496 561 1.2E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Pfam PF00072 Response regulator receiver domain 853 960 2.1E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 SMART SM00448 851 962 9.2E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 SUPERFAMILY SSF55874 550 720 5.63E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 SUPERFAMILY SSF55785 368 474 3.59E-8 T 11-10-2018 IPR035965 PAS domain superfamily APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 PRINTS PR00344 Bacterial sensor protein C-terminal signature 683 701 1.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 PRINTS PR00344 Bacterial sensor protein C-terminal signature 707 720 1.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 PRINTS PR00344 Bacterial sensor protein C-terminal signature 667 677 1.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 PRINTS PR00344 Bacterial sensor protein C-terminal signature 649 663 1.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Gene3D G3DSA:3.40.50.2300 836 970 3.4E-35 T 11-10-2018 APT56_20205 31f01c48dc7f71398d53a037053e18c0 1085 Pfam PF00512 His Kinase A (phospho-acceptor) domain 496 561 4.4E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20450 2dc2bc942486c1ab8980956367bc2777 110 SUPERFAMILY SSF51182 3 95 2.57E-16 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_20450 2dc2bc942486c1ab8980956367bc2777 110 Pfam PF07883 Cupin domain 37 94 1.7E-10 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_20450 2dc2bc942486c1ab8980956367bc2777 110 Gene3D G3DSA:2.60.120.10 2 98 9.0E-20 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_12445 7716a878e85956ee5aa69e6c0453ce91 256 Gene3D G3DSA:3.20.20.140 1 256 2.2E-90 T 11-10-2018 APT56_12445 7716a878e85956ee5aa69e6c0453ce91 256 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APT56_12445 7716a878e85956ee5aa69e6c0453ce91 256 Pfam PF01026 TatD related DNase 3 252 4.4E-78 T 11-10-2018 IPR001130 TatD family GO:0016788 APT56_12445 7716a878e85956ee5aa69e6c0453ce91 256 SUPERFAMILY SSF51556 1 252 3.3E-88 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_12445 7716a878e85956ee5aa69e6c0453ce91 256 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 188 204 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APT56_12445 7716a878e85956ee5aa69e6c0453ce91 256 PIRSF PIRSF005902 1 256 1.8E-79 T 11-10-2018 IPR001130 TatD family GO:0016788 APT56_12445 7716a878e85956ee5aa69e6c0453ce91 256 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 252 4.4E-83 T 11-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 APT56_07730 523fb9b6f8ab22ff91fbd7be2e4a0822 320 SUPERFAMILY SSF50249 26 83 2.57E-8 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07730 523fb9b6f8ab22ff91fbd7be2e4a0822 320 SUPERFAMILY SSF52540 96 312 3.94E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07730 523fb9b6f8ab22ff91fbd7be2e4a0822 320 Pfam PF03193 RsgA GTPase 79 252 4.0E-45 T 11-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 APT56_07730 523fb9b6f8ab22ff91fbd7be2e4a0822 320 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 25 317 34.102 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 APT56_07730 523fb9b6f8ab22ff91fbd7be2e4a0822 320 Gene3D G3DSA:2.40.50.140 23 80 6.3E-10 T 11-10-2018 APT56_07730 523fb9b6f8ab22ff91fbd7be2e4a0822 320 Gene3D G3DSA:3.40.50.300 82 252 1.2E-35 T 11-10-2018 APT56_07730 523fb9b6f8ab22ff91fbd7be2e4a0822 320 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 60 310 2.0E-58 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 APT56_07730 523fb9b6f8ab22ff91fbd7be2e4a0822 320 Gene3D G3DSA:1.10.40.50 253 320 2.0E-19 T 11-10-2018 APT56_04650 80dbd66c6ae138561172556b2838487a 380 SUPERFAMILY SSF110738 2 373 2.62E-130 T 11-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 APT56_04650 80dbd66c6ae138561172556b2838487a 380 Pfam PF02595 Glycerate kinase family 3 372 2.4E-143 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 APT56_04650 80dbd66c6ae138561172556b2838487a 380 Gene3D G3DSA:3.90.1510.10 42 275 1.1E-136 T 11-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 APT56_04650 80dbd66c6ae138561172556b2838487a 380 PIRSF PIRSF006078 1 377 7.1E-129 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 APT56_04650 80dbd66c6ae138561172556b2838487a 380 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 373 4.8E-146 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 APT56_04650 80dbd66c6ae138561172556b2838487a 380 Gene3D G3DSA:3.40.50.10350 2 361 1.1E-136 T 11-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold APT56_27420 72a24928021ba410b13bc974c0c4f6a1 349 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 1.3E-86 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_27420 72a24928021ba410b13bc974c0c4f6a1 349 SUPERFAMILY SSF51735 1 333 2.28E-85 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_27420 72a24928021ba410b13bc974c0c4f6a1 349 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 336 2.0E-137 T 11-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 APT56_27420 72a24928021ba410b13bc974c0c4f6a1 349 Gene3D G3DSA:3.90.25.10 200 330 1.2E-121 T 11-10-2018 APT56_27420 72a24928021ba410b13bc974c0c4f6a1 349 Gene3D G3DSA:3.40.50.720 3 322 1.2E-121 T 11-10-2018 APT56_07850 01311dd0946841152ff0e622b6994839 444 Gene3D G3DSA:1.10.287.130 175 290 7.0E-20 T 11-10-2018 APT56_07850 01311dd0946841152ff0e622b6994839 444 SMART SM00388 224 289 6.1E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_07850 01311dd0946841152ff0e622b6994839 444 SUPERFAMILY SSF55874 278 441 3.8E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_07850 01311dd0946841152ff0e622b6994839 444 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 440 1.0E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_07850 01311dd0946841152ff0e622b6994839 444 Pfam PF08521 Two-component sensor kinase N-terminal 22 145 9.4E-9 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal APT56_07850 01311dd0946841152ff0e622b6994839 444 Gene3D G3DSA:3.30.565.10 293 441 7.7E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_07850 01311dd0946841152ff0e622b6994839 444 Pfam PF00512 His Kinase A (phospho-acceptor) domain 225 288 4.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_07850 01311dd0946841152ff0e622b6994839 444 SUPERFAMILY SSF47384 207 288 1.31E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_07850 01311dd0946841152ff0e622b6994839 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 8.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_07850 01311dd0946841152ff0e622b6994839 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 399 8.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_07850 01311dd0946841152ff0e622b6994839 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 8.7E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_07850 01311dd0946841152ff0e622b6994839 444 SMART SM00387 334 443 3.8E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_11000 5cdd942773e2b3e7531340a29745517e 180 Gene3D G3DSA:3.40.470.10 15 179 1.7E-51 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_11000 5cdd942773e2b3e7531340a29745517e 180 Pfam PF03167 Uracil DNA glycosylase superfamily 24 173 1.5E-8 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_11000 5cdd942773e2b3e7531340a29745517e 180 SUPERFAMILY SSF52141 19 176 2.35E-34 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_11000 5cdd942773e2b3e7531340a29745517e 180 SMART SM00987 20 176 3.9E-10 T 11-10-2018 APT56_11000 5cdd942773e2b3e7531340a29745517e 180 SMART SM00986 20 176 3.9E-10 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_11000 5cdd942773e2b3e7531340a29745517e 180 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 18 172 1.5E-47 T 11-10-2018 IPR026353 Hypoxanthine-DNA glycosylase APT56_04490 788523ce7c268998660347f304ad5ae2 265 Gene3D G3DSA:3.40.190.10 111 216 1.1E-101 T 11-10-2018 APT56_04490 788523ce7c268998660347f304ad5ae2 265 Gene3D G3DSA:3.40.190.10 31 260 1.1E-101 T 11-10-2018 APT56_04490 788523ce7c268998660347f304ad5ae2 265 Pfam PF03180 NLPA lipoprotein 30 265 4.1E-97 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_04490 788523ce7c268998660347f304ad5ae2 265 SUPERFAMILY SSF53850 30 265 2.05E-91 T 11-10-2018 APT56_04490 788523ce7c268998660347f304ad5ae2 265 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 27 265 5.2E-77 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_04490 788523ce7c268998660347f304ad5ae2 265 PIRSF PIRSF002854 1 265 1.2E-106 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_25760 5a84b30948859b9bc703feb0caa51745 397 Gene3D G3DSA:1.10.287.470 106 179 5.2E-94 T 11-10-2018 APT56_25760 5a84b30948859b9bc703feb0caa51745 397 SUPERFAMILY SSF111369 62 301 2.62E-62 T 11-10-2018 APT56_25760 5a84b30948859b9bc703feb0caa51745 397 Gene3D G3DSA:2.40.50.100 71 216 5.2E-94 T 11-10-2018 APT56_25760 5a84b30948859b9bc703feb0caa51745 397 Gene3D G3DSA:2.40.30.170 60 307 5.2E-94 T 11-10-2018 APT56_25760 5a84b30948859b9bc703feb0caa51745 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 297 1.4E-14 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_25760 5a84b30948859b9bc703feb0caa51745 397 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 378 1.6E-86 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_25760 5a84b30948859b9bc703feb0caa51745 397 Gene3D G3DSA:2.40.420.20 308 376 5.2E-94 T 11-10-2018 APT56_18725 1ee03e8f4715a39d2709133ba5b45642 145 Pfam PF13673 Acetyltransferase (GNAT) domain 37 130 9.5E-16 T 11-10-2018 IPR000182 GNAT domain APT56_18725 1ee03e8f4715a39d2709133ba5b45642 145 Gene3D G3DSA:3.40.630.30 1 145 2.8E-36 T 11-10-2018 APT56_18725 1ee03e8f4715a39d2709133ba5b45642 145 SUPERFAMILY SSF55729 1 143 6.91E-26 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_02575 ae1d0c65b2d0806dc5b4f8d326e87878 173 SUPERFAMILY SSF55729 5 165 1.37E-30 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_02575 ae1d0c65b2d0806dc5b4f8d326e87878 173 Pfam PF13420 Acetyltransferase (GNAT) domain 12 156 1.6E-17 T 11-10-2018 APT56_02575 ae1d0c65b2d0806dc5b4f8d326e87878 173 Gene3D G3DSA:3.40.630.30 1 173 4.1E-52 T 11-10-2018 APT56_01350 026424f4dba159dc2efba95f82b31663 488 SUPERFAMILY SSF51971 142 414 2.47E-64 T 11-10-2018 APT56_01350 026424f4dba159dc2efba95f82b31663 488 Gene3D G3DSA:1.10.1060.10 7 142 5.0E-25 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APT56_01350 026424f4dba159dc2efba95f82b31663 488 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 24 130 3.7E-26 T 11-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 APT56_01350 026424f4dba159dc2efba95f82b31663 488 Gene3D G3DSA:3.40.50.720 143 256 2.6E-15 T 11-10-2018 APT56_01350 026424f4dba159dc2efba95f82b31663 488 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 469 2.2E-26 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_01350 026424f4dba159dc2efba95f82b31663 488 Gene3D G3DSA:3.50.50.60 257 413 7.3E-37 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_01350 026424f4dba159dc2efba95f82b31663 488 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 487 6.9E-227 T 11-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 APT56_01350 026424f4dba159dc2efba95f82b31663 488 SUPERFAMILY SSF51971 371 481 3.65E-11 T 11-10-2018 APT56_01350 026424f4dba159dc2efba95f82b31663 488 SUPERFAMILY SSF46548 2 154 3.92E-41 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APT56_01350 026424f4dba159dc2efba95f82b31663 488 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 4.6E-21 T 11-10-2018 APT56_01350 026424f4dba159dc2efba95f82b31663 488 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 4.6E-21 T 11-10-2018 APT56_01350 026424f4dba159dc2efba95f82b31663 488 PRINTS PR00419 Adrenodoxin reductase family signature 294 308 4.6E-21 T 11-10-2018 APT56_19715 c08f33870564d9ef9c840e502acd2e19 371 PIRSF PIRSF015557 1 369 1.7E-138 T 11-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 APT56_19715 c08f33870564d9ef9c840e502acd2e19 371 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 4 364 2.2E-132 T 11-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 APT56_19715 c08f33870564d9ef9c840e502acd2e19 371 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 4 365 1.2E-135 T 11-10-2018 IPR016633 Uncharacterised conserved protein UCP015557 APT56_01750 1bb5f68fc8d046b87823c5b0d704ef66 243 Gene3D G3DSA:1.20.910.10 1 236 1.5E-58 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_01750 1bb5f68fc8d046b87823c5b0d704ef66 243 Pfam PF14518 Iron-containing redox enzyme 44 215 4.0E-36 T 11-10-2018 APT56_01750 1bb5f68fc8d046b87823c5b0d704ef66 243 SUPERFAMILY SSF48613 9 226 3.89E-51 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_01750 1bb5f68fc8d046b87823c5b0d704ef66 243 SMART SM01236 78 181 6.8E-27 T 11-10-2018 APT56_21680 300575eda1cc211dd91939be7153c97f 351 Gene3D G3DSA:3.40.50.880 17 220 7.4E-51 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_21680 300575eda1cc211dd91939be7153c97f 351 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 286 328 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_21680 300575eda1cc211dd91939be7153c97f 351 SUPERFAMILY SSF46689 233 283 6.27E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_21680 300575eda1cc211dd91939be7153c97f 351 SUPERFAMILY SSF52317 20 210 7.8E-43 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_21680 300575eda1cc211dd91939be7153c97f 351 Pfam PF12833 Helix-turn-helix domain 255 333 3.4E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_21680 300575eda1cc211dd91939be7153c97f 351 SUPERFAMILY SSF46689 285 336 1.84E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_21680 300575eda1cc211dd91939be7153c97f 351 SMART SM00342 249 332 1.7E-30 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_21680 300575eda1cc211dd91939be7153c97f 351 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 316 332 3.9E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_21680 300575eda1cc211dd91939be7153c97f 351 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 301 316 3.9E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_21680 300575eda1cc211dd91939be7153c97f 351 Pfam PF01965 DJ-1/PfpI family 59 193 1.4E-13 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_21680 300575eda1cc211dd91939be7153c97f 351 Gene3D G3DSA:1.10.10.60 229 338 8.7E-32 T 11-10-2018 APT56_14540 a2b94500a5de0ed7c88ffd397a510513 212 Gene3D G3DSA:3.40.30.10 8 203 3.4E-38 T 11-10-2018 APT56_14540 a2b94500a5de0ed7c88ffd397a510513 212 SUPERFAMILY SSF52833 2 87 2.47E-15 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_14540 a2b94500a5de0ed7c88ffd397a510513 212 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 78 6.9E-10 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_14540 a2b94500a5de0ed7c88ffd397a510513 212 SUPERFAMILY SSF47616 84 205 5.81E-9 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_14540 a2b94500a5de0ed7c88ffd397a510513 212 Gene3D G3DSA:1.20.1050.10 85 196 3.4E-38 T 11-10-2018 APT56_00365 72efeaefebce41186a6c43e10062e393 301 SUPERFAMILY SSF103481 44 139 8.37E-13 T 11-10-2018 APT56_00365 72efeaefebce41186a6c43e10062e393 301 Pfam PF00892 EamA-like transporter family 11 135 3.8E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_00365 72efeaefebce41186a6c43e10062e393 301 Pfam PF00892 EamA-like transporter family 149 290 3.6E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_00365 72efeaefebce41186a6c43e10062e393 301 SUPERFAMILY SSF103481 217 296 6.28E-11 T 11-10-2018 APT56_13440 a9f8d69746f8f71b37abe0c8289e48d5 279 Gene3D G3DSA:3.40.50.300 1 253 2.6E-58 T 11-10-2018 APT56_13440 a9f8d69746f8f71b37abe0c8289e48d5 279 SUPERFAMILY SSF52540 4 229 1.95E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_13440 a9f8d69746f8f71b37abe0c8289e48d5 279 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_13440 a9f8d69746f8f71b37abe0c8289e48d5 279 Pfam PF00005 ABC transporter 27 166 1.2E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13440 a9f8d69746f8f71b37abe0c8289e48d5 279 SMART SM00382 29 217 6.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17080 5d38af97cd119fb1d884f7e588d7f992 161 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 153 2.5E-15 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_17080 5d38af97cd119fb1d884f7e588d7f992 161 SUPERFAMILY SSF88659 99 157 1.68E-10 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_17080 5d38af97cd119fb1d884f7e588d7f992 161 Gene3D G3DSA:1.10.10.10 100 155 1.1E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17080 5d38af97cd119fb1d884f7e588d7f992 161 Pfam PF08281 Sigma-70, region 4 105 153 2.8E-12 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_17080 5d38af97cd119fb1d884f7e588d7f992 161 SUPERFAMILY SSF88946 6 94 3.57E-11 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_17080 5d38af97cd119fb1d884f7e588d7f992 161 Pfam PF04542 Sigma-70 region 2 9 74 7.2E-12 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 457 2.5E-29 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 Gene3D G3DSA:3.50.50.60 10 334 4.0E-109 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 SUPERFAMILY SSF51905 3 339 1.14E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 10 467 3.3E-145 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PIRSF PIRSF000350 1 461 8.7E-77 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 Gene3D G3DSA:3.50.50.60 154 273 4.0E-109 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 154 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 180 205 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 1.6E-68 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 Gene3D G3DSA:3.30.390.30 347 467 1.6E-38 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 10 329 1.3E-67 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 2.3E-37 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 180 198 2.3E-37 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 2.3E-37 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 160 2.3E-37 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 2.3E-37 T 11-10-2018 APT56_11580 0f8f5bee080cae8d06dbe4c395b2b7cc 467 SUPERFAMILY SSF55424 347 466 1.49E-32 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_13495 06242b6f87a4bbf0a264a243da8df70c 338 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 56 69 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_13495 06242b6f87a4bbf0a264a243da8df70c 338 SMART SM00062 34 263 1.6E-42 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_13495 06242b6f87a4bbf0a264a243da8df70c 338 SUPERFAMILY SSF53850 25 257 8.64E-46 T 11-10-2018 APT56_13495 06242b6f87a4bbf0a264a243da8df70c 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 253 2.9E-30 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_13495 06242b6f87a4bbf0a264a243da8df70c 338 Gene3D G3DSA:3.40.190.10 120 226 3.7E-48 T 11-10-2018 APT56_13495 06242b6f87a4bbf0a264a243da8df70c 338 Gene3D G3DSA:3.40.190.10 29 241 3.7E-48 T 11-10-2018 APT56_25375 ee86467165e3a4feccf03fdff15817b8 727 SUPERFAMILY SSF56935 28 727 3.67E-114 T 11-10-2018 APT56_25375 ee86467165e3a4feccf03fdff15817b8 727 Gene3D G3DSA:2.40.170.20 175 727 1.3E-92 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_25375 ee86467165e3a4feccf03fdff15817b8 727 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 710 727 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_25375 ee86467165e3a4feccf03fdff15817b8 727 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 727 1.2E-80 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_25375 ee86467165e3a4feccf03fdff15817b8 727 Pfam PF00593 TonB dependent receptor 237 725 1.9E-46 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_25375 ee86467165e3a4feccf03fdff15817b8 727 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 160 1.2E-20 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_25375 ee86467165e3a4feccf03fdff15817b8 727 Gene3D G3DSA:2.170.130.10 40 167 3.1E-30 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_09535 7022b118a53016489088329c1600420a 451 SUPERFAMILY SSF52540 6 178 4.59E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09535 7022b118a53016489088329c1600420a 451 Gene3D G3DSA:3.40.50.300 181 356 2.7E-48 T 11-10-2018 APT56_09535 7022b118a53016489088329c1600420a 451 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 75 93 1.4E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_09535 7022b118a53016489088329c1600420a 451 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 7 27 1.4E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_09535 7022b118a53016489088329c1600420a 451 PIRSF PIRSF006485 3 449 3.4E-171 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 APT56_09535 7022b118a53016489088329c1600420a 451 Gene3D G3DSA:3.30.300.20 361 443 4.0E-21 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_09535 7022b118a53016489088329c1600420a 451 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 5 441 1.1E-171 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 APT56_09535 7022b118a53016489088329c1600420a 451 Gene3D G3DSA:3.40.50.300 3 164 5.8E-40 T 11-10-2018 APT56_09535 7022b118a53016489088329c1600420a 451 SMART SM00382 184 327 0.24 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09535 7022b118a53016489088329c1600420a 451 SMART SM00382 3 146 0.9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09535 7022b118a53016489088329c1600420a 451 Pfam PF01926 50S ribosome-binding GTPase 7 123 4.4E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_09535 7022b118a53016489088329c1600420a 451 Pfam PF01926 50S ribosome-binding GTPase 188 305 1.8E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_09535 7022b118a53016489088329c1600420a 451 SUPERFAMILY SSF52540 141 447 2.99E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09535 7022b118a53016489088329c1600420a 451 Hamap MF_00195 GTPase Der [der]. 4 444 38.03 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 APT56_09535 7022b118a53016489088329c1600420a 451 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 361 441 2.0E-25 T 11-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like APT56_09535 7022b118a53016489088329c1600420a 451 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 161 2.9E-17 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_09535 7022b118a53016489088329c1600420a 451 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 185 351 4.1E-25 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_20705 1b606784afa10ff20aa4cd24383db012 321 PIRSF PIRSF017082 1 321 5.6E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20705 1b606784afa10ff20aa4cd24383db012 321 Gene3D G3DSA:3.40.190.150 26 311 5.4E-109 T 11-10-2018 APT56_20705 1b606784afa10ff20aa4cd24383db012 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 318 1.1E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20705 1b606784afa10ff20aa4cd24383db012 321 SUPERFAMILY SSF53850 110 281 7.24E-15 T 11-10-2018 APT56_20705 1b606784afa10ff20aa4cd24383db012 321 Gene3D G3DSA:3.40.190.10 123 246 5.4E-109 T 11-10-2018 APT56_18845 020ea10b5c3166bb384e15c6379847dc 126 Pfam PF01479 S4 domain 5 50 1.5E-12 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_18845 020ea10b5c3166bb384e15c6379847dc 126 SMART SM00363 4 69 1.7E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_18845 020ea10b5c3166bb384e15c6379847dc 126 SUPERFAMILY SSF55174 2 100 9.42E-28 T 11-10-2018 APT56_18845 020ea10b5c3166bb384e15c6379847dc 126 Gene3D G3DSA:3.10.290.10 1 101 1.7E-35 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_18845 020ea10b5c3166bb384e15c6379847dc 126 PIRSF PIRSF016821 1 126 2.3E-45 T 11-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 APT56_00275 2618c32b07fcdf8af026e1159c873047 123 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 10 108 9.6E-11 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APT56_00275 2618c32b07fcdf8af026e1159c873047 123 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 61 75 - T 11-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 APT56_00275 2618c32b07fcdf8af026e1159c873047 123 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 120 13.892 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APT56_00275 2618c32b07fcdf8af026e1159c873047 123 SUPERFAMILY SSF54211 5 108 7.59E-19 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_00275 2618c32b07fcdf8af026e1159c873047 123 Pfam PF00825 Ribonuclease P 6 111 6.6E-20 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APT56_00275 2618c32b07fcdf8af026e1159c873047 123 Gene3D G3DSA:3.30.230.10 1 122 2.8E-24 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_00275 2618c32b07fcdf8af026e1159c873047 123 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 51 97 4.0E-7 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APT56_17690 fad3fe5760f558644ff480321feaa20c 403 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 196 215 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APT56_17690 fad3fe5760f558644ff480321feaa20c 403 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 2 394 55.782 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 APT56_17690 fad3fe5760f558644ff480321feaa20c 403 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 4 403 2.1E-229 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 APT56_17690 fad3fe5760f558644ff480321feaa20c 403 Gene3D G3DSA:3.40.640.10 17 261 2.4E-165 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_17690 fad3fe5760f558644ff480321feaa20c 403 Gene3D G3DSA:3.90.1150.10 6 374 2.4E-165 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_17690 fad3fe5760f558644ff480321feaa20c 403 Pfam PF00266 Aminotransferase class-V 6 367 1.8E-90 T 11-10-2018 IPR000192 Aminotransferase class V domain APT56_17690 fad3fe5760f558644ff480321feaa20c 403 PIRSF PIRSF005572 3 383 1.1E-136 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 APT56_17690 fad3fe5760f558644ff480321feaa20c 403 SUPERFAMILY SSF53383 5 390 2.69E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_18480 596e5f45c6660d552bab40838c1560ef 396 Gene3D G3DSA:3.50.50.60 5 329 1.3E-88 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_18480 596e5f45c6660d552bab40838c1560ef 396 SUPERFAMILY SSF51905 213 387 2.27E-9 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_18480 596e5f45c6660d552bab40838c1560ef 396 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 136 1.3E-9 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_18480 596e5f45c6660d552bab40838c1560ef 396 Gene3D G3DSA:3.50.50.60 116 271 1.3E-88 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_18480 596e5f45c6660d552bab40838c1560ef 396 SUPERFAMILY SSF51905 120 262 5.19E-22 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_18480 596e5f45c6660d552bab40838c1560ef 396 SUPERFAMILY SSF51905 1 144 3.56E-23 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13985 e8cc075de7e559828332589f08105805 422 Pfam PF00355 Rieske [2Fe-2S] domain 54 137 1.1E-17 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_13985 e8cc075de7e559828332589f08105805 422 SUPERFAMILY SSF55961 184 420 5.65E-46 T 11-10-2018 APT56_13985 e8cc075de7e559828332589f08105805 422 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 111 131 4.8E-22 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_13985 e8cc075de7e559828332589f08105805 422 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 69 84 4.8E-22 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_13985 e8cc075de7e559828332589f08105805 422 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 159 185 4.8E-22 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_13985 e8cc075de7e559828332589f08105805 422 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 198 220 4.8E-22 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_13985 e8cc075de7e559828332589f08105805 422 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 90 110 4.8E-22 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_13985 e8cc075de7e559828332589f08105805 422 SUPERFAMILY SSF50022 21 175 4.71E-45 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_13985 e8cc075de7e559828332589f08105805 422 Gene3D G3DSA:3.90.380.10 30 420 5.4E-84 T 11-10-2018 APT56_13985 e8cc075de7e559828332589f08105805 422 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 210 420 4.7E-17 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 APT56_13985 e8cc075de7e559828332589f08105805 422 Gene3D G3DSA:2.102.10.10 54 183 5.4E-84 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_07630 855ac530c1f84b4205854fd7a53c932c 304 SUPERFAMILY SSF52768 2 303 7.67E-103 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily APT56_07630 855ac530c1f84b4205854fd7a53c932c 304 Gene3D G3DSA:3.40.800.20 1 304 4.7E-122 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_07630 855ac530c1f84b4205854fd7a53c932c 304 Pfam PF00850 Histone deacetylase domain 17 301 9.9E-84 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_07630 855ac530c1f84b4205854fd7a53c932c 304 PRINTS PR01270 Histone deacetylase superfamily signature 231 241 6.8E-18 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_07630 855ac530c1f84b4205854fd7a53c932c 304 PRINTS PR01270 Histone deacetylase superfamily signature 153 168 6.8E-18 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_07630 855ac530c1f84b4205854fd7a53c932c 304 PRINTS PR01270 Histone deacetylase superfamily signature 119 142 6.8E-18 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 SUPERFAMILY SSF56003 324 756 1.86E-108 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 Gene3D G3DSA:3.30.365.10 48 188 3.0E-29 T 11-10-2018 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 SMART SM01008 218 304 1.4E-16 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 PIRSF PIRSF036389 10 755 1.3E-179 T 11-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 Gene3D G3DSA:3.90.1170.50 189 246 7.0E-7 T 11-10-2018 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 Gene3D G3DSA:3.30.365.10 610 759 1.5E-35 T 11-10-2018 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 SUPERFAMILY SSF56003 66 244 2.62E-30 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 69 214 6.9E-21 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 327 562 1.3E-28 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 613 701 2.3E-11 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 SUPERFAMILY SSF54665 219 305 1.78E-7 T 11-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily APT56_16410 3c3412f90ccdc76deefbf650e7f250b5 767 Gene3D G3DSA:3.30.365.10 247 609 2.6E-47 T 11-10-2018 APT56_13375 c28274e00500ae172ce0ac76e35d84b9 409 Pfam PF07690 Major Facilitator Superfamily 18 361 4.2E-38 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_13375 c28274e00500ae172ce0ac76e35d84b9 409 SUPERFAMILY SSF103473 8 397 2.09E-56 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_13375 c28274e00500ae172ce0ac76e35d84b9 409 Gene3D G3DSA:1.20.1720.10 13 394 4.1E-88 T 11-10-2018 APT56_12845 292ea648d20dac274c436ddee54f877b 537 Pfam PF03929 PepSY-associated TM region 2 378 4.6E-63 T 11-10-2018 IPR005625 PepSY-associated TM protein APT56_05845 503c521bf89cb344da6c1f7b7bb53ee4 326 PIRSF PIRSF017082 1 325 1.4E-69 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_05845 503c521bf89cb344da6c1f7b7bb53ee4 326 Gene3D G3DSA:3.40.190.10 127 250 8.9E-104 T 11-10-2018 APT56_05845 503c521bf89cb344da6c1f7b7bb53ee4 326 Gene3D G3DSA:3.40.190.150 29 315 8.9E-104 T 11-10-2018 APT56_05845 503c521bf89cb344da6c1f7b7bb53ee4 326 SUPERFAMILY SSF53850 114 279 6.88E-9 T 11-10-2018 APT56_05845 503c521bf89cb344da6c1f7b7bb53ee4 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 321 1.4E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18525 021d664476159e4e889a584ae76eef24 195 SUPERFAMILY SSF55811 13 180 2.44E-49 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_18525 021d664476159e4e889a584ae76eef24 195 Gene3D G3DSA:3.90.79.10 7 187 1.6E-54 T 11-10-2018 APT56_18525 021d664476159e4e889a584ae76eef24 195 Pfam PF00293 NUDIX domain 49 160 3.2E-15 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_09220 589ed5758cfd4851ad9115861a9801a8 243 SUPERFAMILY SSF75625 3 240 1.06E-94 T 11-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_09220 589ed5758cfd4851ad9115861a9801a8 243 Gene3D G3DSA:3.30.70.980 130 205 7.5E-52 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_09220 589ed5758cfd4851ad9115861a9801a8 243 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 34.524 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_09220 589ed5758cfd4851ad9115861a9801a8 243 Pfam PF01709 Transcriptional regulator 5 236 1.5E-95 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_09220 589ed5758cfd4851ad9115861a9801a8 243 Gene3D G3DSA:1.10.10.200 1 80 3.9E-35 T 11-10-2018 IPR017856 Integrase-like, N-terminal APT56_09220 589ed5758cfd4851ad9115861a9801a8 243 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 235 3.3E-92 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_09220 589ed5758cfd4851ad9115861a9801a8 243 Gene3D G3DSA:3.30.70.980 85 235 7.5E-52 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01875 01e63734ef825c60a3e2b52a321120b6 269 SUPERFAMILY SSF52540 17 242 3.63E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01875 01e63734ef825c60a3e2b52a321120b6 269 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_01875 01e63734ef825c60a3e2b52a321120b6 269 Gene3D G3DSA:3.40.50.300 15 265 2.6E-80 T 11-10-2018 APT56_01875 01e63734ef825c60a3e2b52a321120b6 269 Pfam PF00005 ABC transporter 38 186 1.5E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_01875 01e63734ef825c60a3e2b52a321120b6 269 SMART SM00382 46 235 6.6E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09035 c27292bce81467804781ac11c6a79a57 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 1.0E-37 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 APT56_09035 c27292bce81467804781ac11c6a79a57 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 29.139 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 APT56_09035 c27292bce81467804781ac11c6a79a57 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 3.2E-42 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 APT56_09035 c27292bce81467804781ac11c6a79a57 90 PIRSF PIRSF029827 1 90 7.2E-42 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 APT56_09035 c27292bce81467804781ac11c6a79a57 90 Gene3D G3DSA:1.10.3880.10 1 90 8.4E-40 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 APT56_09035 c27292bce81467804781ac11c6a79a57 90 SUPERFAMILY SSF111148 1 89 6.93E-39 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 APT56_23500 a9add898953f6335a0539e5debe3e267 258 SUPERFAMILY SSF51735 1 253 1.26E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_23500 a9add898953f6335a0539e5debe3e267 258 Gene3D G3DSA:3.40.50.720 1 255 9.6E-62 T 11-10-2018 APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 7.5E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 7.5E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 7.5E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 4.0E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 4.0E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.0E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 4.0E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 4.0E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 4.0E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23500 a9add898953f6335a0539e5debe3e267 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 7.4E-37 T 11-10-2018 APT56_05560 1ce9c4aa830e12d70ccb9264286a14a5 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 545 6.3E-158 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 APT56_05560 1ce9c4aa830e12d70ccb9264286a14a5 553 PIRSF PIRSF003128 1 548 2.5E-161 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 APT56_05560 1ce9c4aa830e12d70ccb9264286a14a5 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 503 1.7E-19 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal APT56_05560 1ce9c4aa830e12d70ccb9264286a14a5 553 Gene3D G3DSA:3.40.50.300 264 547 2.1E-54 T 11-10-2018 APT56_05560 1ce9c4aa830e12d70ccb9264286a14a5 553 Gene3D G3DSA:3.40.50.300 1 220 9.6E-45 T 11-10-2018 APT56_05560 1ce9c4aa830e12d70ccb9264286a14a5 553 SUPERFAMILY SSF52540 3 497 8.13E-27 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05560 1ce9c4aa830e12d70ccb9264286a14a5 553 SUPERFAMILY SSF52540 1 215 5.54E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11870 1b0dce600d1c1efec8723f39b7ce9d3c 554 SUPERFAMILY SSF64518 340 554 1.27E-36 T 11-10-2018 APT56_11870 1b0dce600d1c1efec8723f39b7ce9d3c 554 Pfam PF00700 Bacterial flagellin C-terminal helical region 469 553 3.6E-29 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 APT56_11870 1b0dce600d1c1efec8723f39b7ce9d3c 554 Pfam PF12445 Flagellin protein 326 459 4.1E-14 T 11-10-2018 IPR032826 Flagellin, H7-serospecific domain APT56_11870 1b0dce600d1c1efec8723f39b7ce9d3c 554 SUPERFAMILY SSF64518 1 351 1.7E-68 T 11-10-2018 APT56_11870 1b0dce600d1c1efec8723f39b7ce9d3c 554 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 5.6E-44 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 APT56_11870 1b0dce600d1c1efec8723f39b7ce9d3c 554 PRINTS PR00207 Flagellin signature 111 134 7.0E-28 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_11870 1b0dce600d1c1efec8723f39b7ce9d3c 554 PRINTS PR00207 Flagellin signature 76 95 7.0E-28 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_11870 1b0dce600d1c1efec8723f39b7ce9d3c 554 PRINTS PR00207 Flagellin signature 37 54 7.0E-28 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 301 6.5E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 Gene3D G3DSA:3.40.190.10 508 805 2.4E-115 T 11-10-2018 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 Pfam PF13531 Bacterial extracellular solute-binding protein 509 764 4.5E-16 T 11-10-2018 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 SMART SM00387 348 458 6.2E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 SUPERFAMILY SSF47384 221 298 2.35E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 Pfam PF08521 Two-component sensor kinase N-terminal 24 162 1.2E-33 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 Gene3D G3DSA:1.10.287.130 190 302 1.9E-13 T 11-10-2018 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 Gene3D G3DSA:3.30.565.10 305 456 4.6E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 SMART SM00388 238 303 1.8E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 457 9.0E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 SUPERFAMILY SSF55874 292 457 5.24E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 2.8E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 2.8E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 455 2.8E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 SUPERFAMILY SSF53850 508 780 4.48E-40 T 11-10-2018 APT56_03260 bb9cde68eb0e07e4cdb0b1017bdf0983 828 Gene3D G3DSA:3.40.190.10 603 817 2.4E-115 T 11-10-2018 APT56_14805 d375e44b5efdaa807b381719b6cac511 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 3.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14805 d375e44b5efdaa807b381719b6cac511 304 SUPERFAMILY SSF53850 95 293 1.47E-22 T 11-10-2018 APT56_14805 d375e44b5efdaa807b381719b6cac511 304 Pfam PF03466 LysR substrate binding domain 94 291 2.6E-18 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_14805 d375e44b5efdaa807b381719b6cac511 304 SUPERFAMILY SSF46785 4 107 1.97E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14805 d375e44b5efdaa807b381719b6cac511 304 Gene3D G3DSA:1.10.10.10 4 90 8.5E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14805 d375e44b5efdaa807b381719b6cac511 304 Gene3D G3DSA:3.40.190.290 95 282 2.8E-8 T 11-10-2018 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 Gene3D G3DSA:1.10.1040.10 203 348 8.9E-46 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 147 167 6.3E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 187 211 6.3E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 252 269 6.3E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 13 30 6.3E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 212 236 6.3E-37 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 SUPERFAMILY SSF48179 193 344 2.72E-49 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 202 223 - T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 SUPERFAMILY SSF51735 9 194 3.2E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 11 173 5.7E-40 T 11-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 9 335 35.366 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 194 333 4.4E-46 T 11-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 Gene3D G3DSA:3.40.50.720 2 201 1.1E-52 T 11-10-2018 APT56_26410 5c48b978cee5f15cb0ff328a068bae75 349 PIRSF PIRSF000114 5 345 6.9E-97 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APT56_24920 cf0411c01ab59baaac55c4a16b58cd47 497 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 19 473 3.0E-129 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_24920 cf0411c01ab59baaac55c4a16b58cd47 497 Pfam PF02321 Outer membrane efflux protein 74 263 3.6E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_24920 cf0411c01ab59baaac55c4a16b58cd47 497 Pfam PF02321 Outer membrane efflux protein 291 471 3.8E-31 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_24920 cf0411c01ab59baaac55c4a16b58cd47 497 SUPERFAMILY SSF56954 7 474 1.7E-115 T 11-10-2018 APT56_24920 cf0411c01ab59baaac55c4a16b58cd47 497 Gene3D G3DSA:1.20.1600.10 64 473 1.5E-147 T 11-10-2018 APT56_24920 cf0411c01ab59baaac55c4a16b58cd47 497 Gene3D G3DSA:2.20.200.10 110 362 1.5E-147 T 11-10-2018 APT56_04530 a1f61e3387c58c562bda172239d42442 220 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 171 212 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_04530 a1f61e3387c58c562bda172239d42442 220 Gene3D G3DSA:1.10.10.60 118 220 4.3E-22 T 11-10-2018 APT56_04530 a1f61e3387c58c562bda172239d42442 220 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 200 216 1.1E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_04530 a1f61e3387c58c562bda172239d42442 220 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 185 200 1.1E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_04530 a1f61e3387c58c562bda172239d42442 220 SUPERFAMILY SSF51182 2 149 2.4E-10 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_04530 a1f61e3387c58c562bda172239d42442 220 SUPERFAMILY SSF46689 171 216 1.03E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_04530 a1f61e3387c58c562bda172239d42442 220 SMART SM00342 134 216 4.9E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_04530 a1f61e3387c58c562bda172239d42442 220 Pfam PF02311 AraC-like ligand binding domain 2 95 2.1E-4 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_04530 a1f61e3387c58c562bda172239d42442 220 Pfam PF12833 Helix-turn-helix domain 140 217 1.1E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 SUPERFAMILY SSF51011 599 695 2.01E-14 T 11-10-2018 APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 Gene3D G3DSA:2.60.40.10 4 147 5.7E-50 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 Pfam PF00128 Alpha amylase, catalytic domain 201 284 5.3E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 12 694 3.6E-302 T 11-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 16 104 2.0E-16 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 SUPERFAMILY SSF81296 12 158 2.8E-45 T 11-10-2018 IPR014756 Immunoglobulin E-set APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 SMART SM00642 193 577 9.5E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 Gene3D G3DSA:2.60.40.1180 598 695 2.8E-9 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 Gene3D G3DSA:3.20.20.80 150 591 2.1E-160 T 11-10-2018 APT56_13670 5f63950fd160ba50ed6bf0e09b31fabc 703 SUPERFAMILY SSF51445 145 584 3.59E-120 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_15190 9075efd9f7920c8293d6a2b04023db23 430 Pfam PF00860 Permease family 17 390 1.3E-52 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 APT56_15190 9075efd9f7920c8293d6a2b04023db23 430 PIRSF PIRSF005353 1 429 6.7E-177 T 11-10-2018 IPR026033 Purine permease PbuG-like APT56_24430 3922fe19073e5fb968b68faa052f4baa 83 SUPERFAMILY SSF54862 5 77 8.63E-20 T 11-10-2018 APT56_24430 3922fe19073e5fb968b68faa052f4baa 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_24430 3922fe19073e5fb968b68faa052f4baa 83 Pfam PF00037 4Fe-4S binding domain 6 25 5.1E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_24430 3922fe19073e5fb968b68faa052f4baa 83 Gene3D G3DSA:3.30.70.20 2 81 9.6E-33 T 11-10-2018 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 Gene3D G3DSA:2.30.130.10 276 378 4.2E-33 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 PIRSF PIRSF000729 10 378 5.0E-128 T 11-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 ProSitePatterns PS00902 Glutamate 5-kinase signature. 217 234 - T 11-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 SMART SM00359 287 370 1.3E-16 T 11-10-2018 IPR002478 PUA domain GO:0003723 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 PRINTS PR00474 Glutamate 5-kinase family signature 158 185 3.6E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 PRINTS PR00474 Glutamate 5-kinase family signature 126 147 3.6E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 PRINTS PR00474 Glutamate 5-kinase family signature 219 239 3.6E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 PRINTS PR00474 Glutamate 5-kinase family signature 52 66 3.6E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 PRINTS PR00474 Glutamate 5-kinase family signature 86 114 3.6E-51 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 Pfam PF00696 Amino acid kinase family 16 244 2.2E-42 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 SUPERFAMILY SSF88697 286 377 3.09E-25 T 11-10-2018 IPR015947 PUA-like superfamily APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 Hamap MF_00456 Glutamate 5-kinase [proB]. 15 276 36.245 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 Pfam PF01472 PUA domain 287 361 1.9E-23 T 11-10-2018 IPR002478 PUA domain GO:0003723 APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 Gene3D G3DSA:3.40.1160.10 7 268 2.8E-91 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 SUPERFAMILY SSF53633 15 264 4.45E-69 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_26335 5344a28a1a7c743f0129c582f37b6ce6 378 TIGRFAM TIGR01027 proB: glutamate 5-kinase 15 376 1.9E-129 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT56_12680 d58c67ce0c2ac8cc0a18835980306d95 278 SMART SM00382 42 232 3.8E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_12680 d58c67ce0c2ac8cc0a18835980306d95 278 Gene3D G3DSA:3.40.50.300 9 244 2.5E-60 T 11-10-2018 APT56_12680 d58c67ce0c2ac8cc0a18835980306d95 278 Pfam PF00005 ABC transporter 33 173 7.8E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_12680 d58c67ce0c2ac8cc0a18835980306d95 278 SUPERFAMILY SSF52540 12 235 3.29E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12680 d58c67ce0c2ac8cc0a18835980306d95 278 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21140 0430a775f2f1aa85b438e9f4700bf0a7 439 PIRSF PIRSF001362 1 433 8.3E-240 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 APT56_21140 0430a775f2f1aa85b438e9f4700bf0a7 439 SUPERFAMILY SSF51621 6 430 6.73E-158 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_21140 0430a775f2f1aa85b438e9f4700bf0a7 439 Pfam PF00463 Isocitrate lyase family 254 430 9.5E-47 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 APT56_21140 0430a775f2f1aa85b438e9f4700bf0a7 439 Pfam PF00463 Isocitrate lyase family 13 253 2.5E-58 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 APT56_21140 0430a775f2f1aa85b438e9f4700bf0a7 439 Gene3D G3DSA:3.20.20.60 4 413 6.1E-171 T 11-10-2018 APT56_21140 0430a775f2f1aa85b438e9f4700bf0a7 439 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 253 4.4E-111 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 APT56_21140 0430a775f2f1aa85b438e9f4700bf0a7 439 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 254 430 3.4E-83 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 APT56_21140 0430a775f2f1aa85b438e9f4700bf0a7 439 ProSitePatterns PS00161 Isocitrate lyase signature. 191 196 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 Gene3D G3DSA:3.40.190.10 93 292 1.7E-57 T 11-10-2018 APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 SUPERFAMILY SSF53850 93 295 1.49E-35 T 11-10-2018 APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 4.9E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 Gene3D G3DSA:1.10.10.10 2 91 4.8E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 Gene3D G3DSA:3.40.190.10 174 268 1.7E-57 T 11-10-2018 APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 3.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 3.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 3.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 SUPERFAMILY SSF46785 8 88 2.13E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14210 3df955ebdad12a1d602ca207c9f30593 298 Pfam PF03466 LysR substrate binding domain 97 296 1.3E-20 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 SUPERFAMILY SSF56519 54 251 5.62E-47 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 Gene3D G3DSA:3.90.1310.10 62 246 7.6E-43 T 11-10-2018 APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 Gene3D G3DSA:3.30.1390.30 83 158 7.6E-43 T 11-10-2018 APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 Pfam PF03717 Penicillin-binding Protein dimerisation domain 62 237 4.1E-42 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 Gene3D G3DSA:3.40.710.10 247 625 3.0E-99 T 11-10-2018 APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 SUPERFAMILY SSF56601 252 612 7.32E-100 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 18 612 9.5E-225 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 5 615 48.94 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_26765 60e133c738a3eb4215b6f62a6d952168 642 Pfam PF00905 Penicillin binding protein transpeptidase domain 269 607 3.7E-64 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT56_27365 8ca02d22e975a4d2f9c89ec98455e36b 446 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_27365 8ca02d22e975a4d2f9c89ec98455e36b 446 Gene3D G3DSA:3.40.50.300 35 306 2.2E-45 T 11-10-2018 APT56_27365 8ca02d22e975a4d2f9c89ec98455e36b 446 SMART SM00382 62 251 9.7E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_27365 8ca02d22e975a4d2f9c89ec98455e36b 446 SUPERFAMILY SSF52540 47 248 1.0E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27365 8ca02d22e975a4d2f9c89ec98455e36b 446 Pfam PF00005 ABC transporter 53 184 2.5E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27365 8ca02d22e975a4d2f9c89ec98455e36b 446 Pfam PF14524 Wzt C-terminal domain 308 436 4.6E-12 T 11-10-2018 IPR029439 Wzt, C-terminal APT56_19155 12c5d88890a6967f12374467bbf823dd 638 Gene3D G3DSA:2.60.120.200 125 357 2.9E-20 T 11-10-2018 APT56_19155 12c5d88890a6967f12374467bbf823dd 638 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 192 300 1.2E-14 T 11-10-2018 APT56_19155 12c5d88890a6967f12374467bbf823dd 638 Pfam PF10102 Domain of unknown function (DUF2341) 72 153 2.0E-19 T 11-10-2018 IPR018765 Domain of unknown function DUF2341 APT56_19155 12c5d88890a6967f12374467bbf823dd 638 SUPERFAMILY SSF49899 135 356 1.19E-27 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily APT56_19155 12c5d88890a6967f12374467bbf823dd 638 Pfam PF01618 MotA/TolQ/ExbB proton channel family 479 589 4.9E-26 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APT56_19155 12c5d88890a6967f12374467bbf823dd 638 SMART SM00560 202 352 0.0072 T 11-10-2018 IPR006558 LamG-like jellyroll fold APT56_25335 deaf085ecd4642f1e88d9095fbb42b08 279 SUPERFAMILY SSF55781 84 265 1.83E-45 T 11-10-2018 APT56_25335 deaf085ecd4642f1e88d9095fbb42b08 279 SMART SM00346 21 108 1.5E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_25335 deaf085ecd4642f1e88d9095fbb42b08 279 Pfam PF09339 IclR helix-turn-helix domain 23 70 4.9E-11 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_25335 deaf085ecd4642f1e88d9095fbb42b08 279 Gene3D G3DSA:1.10.10.10 10 86 6.1E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25335 deaf085ecd4642f1e88d9095fbb42b08 279 Gene3D G3DSA:3.30.450.40 93 268 2.2E-52 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_25335 deaf085ecd4642f1e88d9095fbb42b08 279 Pfam PF01614 Bacterial transcriptional regulator 138 261 3.0E-20 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_25335 deaf085ecd4642f1e88d9095fbb42b08 279 SUPERFAMILY SSF46785 22 91 2.24E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_07790 ac9b461cc7c6cdedb5285fb3ed3d6a85 157 Gene3D G3DSA:3.10.129.10 17 156 2.3E-54 T 11-10-2018 APT56_07790 ac9b461cc7c6cdedb5285fb3ed3d6a85 157 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 34 144 1.5E-26 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 APT56_07790 ac9b461cc7c6cdedb5285fb3ed3d6a85 157 Pfam PF03061 Thioesterase superfamily 63 136 9.8E-13 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_07790 ac9b461cc7c6cdedb5285fb3ed3d6a85 157 SUPERFAMILY SSF54637 14 141 9.27E-31 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_07790 ac9b461cc7c6cdedb5285fb3ed3d6a85 157 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 34 146 1.4E-48 T 11-10-2018 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 SUPERFAMILY SSF53244 363 502 1.14E-43 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 SUPERFAMILY SSF51984 14 111 1.44E-12 T 11-10-2018 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 12 502 32.163 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 SUPERFAMILY SSF53623 129 361 1.44E-45 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 14 499 3.2E-109 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 Pfam PF02875 Mur ligase family, glutamate ligase domain 365 435 1.9E-5 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 Gene3D G3DSA:3.40.50.720 11 110 5.7E-19 T 11-10-2018 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 Pfam PF08245 Mur ligase middle domain 136 253 1.2E-24 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 Gene3D G3DSA:3.40.1190.10 111 363 5.6E-50 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_04330 8c0cbf3c98f8e607eef763e9b53bb7f5 510 Gene3D G3DSA:3.90.190.20 369 501 7.0E-44 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_04360 d8fb57088023d947e14013487a399393 408 Hamap MF_02033 Cell division protein FtsA [ftsA]. 5 406 30.671 T 11-10-2018 IPR020823 Cell division protein FtsA APT56_04360 d8fb57088023d947e14013487a399393 408 Gene3D G3DSA:3.30.420.40 12 371 1.0E-122 T 11-10-2018 APT56_04360 d8fb57088023d947e14013487a399393 408 SUPERFAMILY SSF53067 198 375 2.32E-47 T 11-10-2018 APT56_04360 d8fb57088023d947e14013487a399393 408 PIRSF PIRSF003101 1 408 6.5E-151 T 11-10-2018 IPR020823 Cell division protein FtsA APT56_04360 d8fb57088023d947e14013487a399393 408 SMART SM00842 9 195 5.8E-107 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 APT56_04360 d8fb57088023d947e14013487a399393 408 Gene3D G3DSA:3.30.1490.110 86 168 1.0E-122 T 11-10-2018 APT56_04360 d8fb57088023d947e14013487a399393 408 SUPERFAMILY SSF53067 7 196 3.63E-63 T 11-10-2018 APT56_04360 d8fb57088023d947e14013487a399393 408 Gene3D G3DSA:3.90.640.10 234 299 1.0E-122 T 11-10-2018 APT56_04360 d8fb57088023d947e14013487a399393 408 Pfam PF14450 Cell division protein FtsA 206 373 3.5E-25 T 11-10-2018 APT56_04360 d8fb57088023d947e14013487a399393 408 Pfam PF14450 Cell division protein FtsA 10 193 5.6E-10 T 11-10-2018 APT56_04360 d8fb57088023d947e14013487a399393 408 Gene3D G3DSA:3.30.420.40 196 351 1.0E-122 T 11-10-2018 APT56_04360 d8fb57088023d947e14013487a399393 408 Pfam PF02491 SHS2 domain inserted in FTSA 84 161 1.9E-32 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 APT56_04360 d8fb57088023d947e14013487a399393 408 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 376 1.6E-147 T 11-10-2018 IPR020823 Cell division protein FtsA APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 SUPERFAMILY SSF48008 82 220 6.8E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 SMART SM00895 86 213 1.0E-13 T 11-10-2018 IPR011711 GntR, C-terminal APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 Gene3D G3DSA:1.10.10.10 11 77 7.5E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 Gene3D G3DSA:1.20.120.530 82 222 2.9E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 Pfam PF07729 FCD domain 87 211 7.7E-20 T 11-10-2018 IPR011711 GntR, C-terminal APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.3E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.3E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 SMART SM00345 18 76 3.1E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 1.6E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20370 74b8e68f746b99fc995d1581d3ba9b45 235 SUPERFAMILY SSF46785 10 80 1.08E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16265 e7137f9c34c278fde427c15189a5fb5a 213 Gene3D G3DSA:3.40.30.10 1 81 2.9E-34 T 11-10-2018 APT56_16265 e7137f9c34c278fde427c15189a5fb5a 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 124 202 7.6E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_16265 e7137f9c34c278fde427c15189a5fb5a 213 Gene3D G3DSA:1.20.1050.10 87 208 4.2E-45 T 11-10-2018 APT56_16265 e7137f9c34c278fde427c15189a5fb5a 213 SUPERFAMILY SSF47616 81 207 6.82E-30 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_16265 e7137f9c34c278fde427c15189a5fb5a 213 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 78 8.6E-15 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_16265 e7137f9c34c278fde427c15189a5fb5a 213 SUPERFAMILY SSF52833 2 87 8.7E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_13315 73b7c34c9f2e86e1001d1474f74e4d10 380 Gene3D G3DSA:3.40.47.10 2 371 3.6E-71 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_13315 73b7c34c9f2e86e1001d1474f74e4d10 380 PIRSF PIRSF000429 2 366 6.4E-18 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_13315 73b7c34c9f2e86e1001d1474f74e4d10 380 SUPERFAMILY SSF53901 245 362 1.08E-16 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_13315 73b7c34c9f2e86e1001d1474f74e4d10 380 SUPERFAMILY SSF53901 7 219 3.12E-17 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_14410 eb56c71530ea86a0e7a51e7b7939a72f 407 SUPERFAMILY SSF52172 9 138 1.85E-20 T 11-10-2018 IPR011006 CheY-like superfamily APT56_14410 eb56c71530ea86a0e7a51e7b7939a72f 407 Gene3D G3DSA:3.40.50.2300 6 155 3.4E-19 T 11-10-2018 APT56_14410 eb56c71530ea86a0e7a51e7b7939a72f 407 SMART SM00448 10 133 8.1E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14410 eb56c71530ea86a0e7a51e7b7939a72f 407 Pfam PF00563 EAL domain 160 394 5.7E-55 T 11-10-2018 IPR001633 EAL domain APT56_14410 eb56c71530ea86a0e7a51e7b7939a72f 407 SUPERFAMILY SSF141868 168 406 3.27E-63 T 11-10-2018 IPR035919 EAL domain superfamily APT56_14410 eb56c71530ea86a0e7a51e7b7939a72f 407 Pfam PF00072 Response regulator receiver domain 12 133 1.4E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14410 eb56c71530ea86a0e7a51e7b7939a72f 407 SMART SM00052 153 399 2.6E-59 T 11-10-2018 IPR001633 EAL domain APT56_14410 eb56c71530ea86a0e7a51e7b7939a72f 407 Gene3D G3DSA:3.20.20.450 156 407 2.4E-67 T 11-10-2018 IPR035919 EAL domain superfamily APT56_25770 a89677986184b25c22054de6441ccf61 495 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 480 1.1E-121 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_25770 a89677986184b25c22054de6441ccf61 495 Pfam PF02321 Outer membrane efflux protein 75 267 2.1E-24 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_25770 a89677986184b25c22054de6441ccf61 495 Pfam PF02321 Outer membrane efflux protein 291 457 8.2E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_25770 a89677986184b25c22054de6441ccf61 495 Gene3D G3DSA:1.20.1600.10 65 481 6.8E-133 T 11-10-2018 APT56_25770 a89677986184b25c22054de6441ccf61 495 Gene3D G3DSA:2.20.200.10 112 369 6.8E-133 T 11-10-2018 APT56_25770 a89677986184b25c22054de6441ccf61 495 SUPERFAMILY SSF56954 3 483 4.58E-110 T 11-10-2018 APT56_27095 b039fbe332364d24533d0612e5a4ae19 298 SUPERFAMILY SSF53474 6 292 1.42E-62 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_27095 b039fbe332364d24533d0612e5a4ae19 298 Pfam PF00561 alpha/beta hydrolase fold 28 146 1.3E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_27095 b039fbe332364d24533d0612e5a4ae19 298 Gene3D G3DSA:3.40.50.1820 9 292 6.4E-73 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 18 272 2.4E-99 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 15 272 42.567 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 SMART SM00849 25 184 1.5E-34 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 SUPERFAMILY SSF56281 17 272 3.08E-69 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 185 272 3.8E-26 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 ProSitePatterns PS00743 Beta-lactamases class B signature 1. 63 82 - T 11-10-2018 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 PIRSF PIRSF005457 11 272 4.6E-95 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 Pfam PF00753 Metallo-beta-lactamase superfamily 27 184 3.4E-17 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_03885 abf84dd0ca3db93a77bd879930dbd541 273 Gene3D G3DSA:3.60.15.10 11 272 1.4E-84 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_11165 e6f4c3ba99c455f0d467c623b4b7998a 306 SUPERFAMILY SSF53850 88 295 3.98E-43 T 11-10-2018 APT56_11165 e6f4c3ba99c455f0d467c623b4b7998a 306 Gene3D G3DSA:1.10.10.10 3 88 3.9E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11165 e6f4c3ba99c455f0d467c623b4b7998a 306 Pfam PF03466 LysR substrate binding domain 87 291 1.3E-41 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11165 e6f4c3ba99c455f0d467c623b4b7998a 306 SUPERFAMILY SSF46785 4 110 4.33E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11165 e6f4c3ba99c455f0d467c623b4b7998a 306 Gene3D G3DSA:3.40.190.290 89 292 3.6E-59 T 11-10-2018 APT56_11165 e6f4c3ba99c455f0d467c623b4b7998a 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 8.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13155 e053335f566820bde05cd4e6829c003b 473 Pfam PF01565 FAD binding domain 44 181 9.5E-36 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_13155 e053335f566820bde05cd4e6829c003b 473 SUPERFAMILY SSF55103 195 471 1.47E-56 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_13155 e053335f566820bde05cd4e6829c003b 473 SUPERFAMILY SSF56176 7 221 1.23E-72 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_13155 e053335f566820bde05cd4e6829c003b 473 Pfam PF02913 FAD linked oxidases, C-terminal domain 220 471 7.4E-56 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_13155 e053335f566820bde05cd4e6829c003b 473 Gene3D G3DSA:3.30.43.10 1 97 1.2E-21 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 APT56_13155 e053335f566820bde05cd4e6829c003b 473 Gene3D G3DSA:3.30.465.10 99 220 6.6E-45 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APT56_13155 e053335f566820bde05cd4e6829c003b 473 Gene3D G3DSA:3.30.70.2740 345 431 3.7E-26 T 11-10-2018 APT56_13155 e053335f566820bde05cd4e6829c003b 473 Gene3D G3DSA:3.30.70.2190 221 342 6.6E-30 T 11-10-2018 APT56_13155 e053335f566820bde05cd4e6829c003b 473 Gene3D G3DSA:1.10.45.10 432 472 2.5E-16 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 Pfam PF07702 UTRA domain 127 257 3.8E-14 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 69 2.6E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 69 85 2.6E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 Gene3D G3DSA:1.10.10.10 17 95 2.3E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 Pfam PF00392 Bacterial regulatory proteins, gntR family 33 95 9.7E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 Gene3D G3DSA:3.40.1410.10 115 264 5.4E-22 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 SUPERFAMILY SSF64288 83 263 2.2E-26 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 SUPERFAMILY SSF46785 29 99 1.57E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 SMART SM00866 116 257 4.0E-13 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_00455 417f06cdb9765da1f303127dc753e4f8 265 SMART SM00345 36 95 4.2E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_07640 ff2b023526955571434a9b18bb73638e 309 Gene3D G3DSA:3.40.50.1220 184 309 5.8E-58 T 11-10-2018 APT56_07640 ff2b023526955571434a9b18bb73638e 309 PIRSF PIRSF000089 1 309 5.1E-108 T 11-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 APT56_07640 ff2b023526955571434a9b18bb73638e 309 Pfam PF01012 Electron transfer flavoprotein domain 3 169 6.0E-40 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 APT56_07640 ff2b023526955571434a9b18bb73638e 309 SMART SM00893 3 182 1.4E-57 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 APT56_07640 ff2b023526955571434a9b18bb73638e 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 272 3.3E-36 T 11-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 APT56_07640 ff2b023526955571434a9b18bb73638e 309 SUPERFAMILY SSF52467 187 309 1.64E-48 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_07640 ff2b023526955571434a9b18bb73638e 309 Gene3D G3DSA:3.40.50.620 3 183 2.0E-56 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_07640 ff2b023526955571434a9b18bb73638e 309 SUPERFAMILY SSF52402 3 186 8.37E-58 T 11-10-2018 APT56_07640 ff2b023526955571434a9b18bb73638e 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 11-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 APT56_17480 99830adbbefe1d462f86b9c159cf665b 143 SUPERFAMILY SSF54593 11 138 4.37E-18 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_17480 99830adbbefe1d462f86b9c159cf665b 143 Gene3D G3DSA:3.10.180.10 4 143 1.7E-55 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_12790 ac9b32e2b0e26439204b31490a916593 243 SMART SM00448 5 116 2.3E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_12790 ac9b32e2b0e26439204b31490a916593 243 SMART SM00862 155 231 1.1E-28 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_12790 ac9b32e2b0e26439204b31490a916593 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 3.5E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_12790 ac9b32e2b0e26439204b31490a916593 243 Gene3D G3DSA:3.40.50.2300 1 122 6.0E-37 T 11-10-2018 APT56_12790 ac9b32e2b0e26439204b31490a916593 243 SUPERFAMILY SSF46894 128 232 2.67E-30 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_12790 ac9b32e2b0e26439204b31490a916593 243 SUPERFAMILY SSF52172 3 129 4.98E-41 T 11-10-2018 IPR011006 CheY-like superfamily APT56_12790 ac9b32e2b0e26439204b31490a916593 243 Pfam PF00072 Response regulator receiver domain 7 116 3.8E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_12790 ac9b32e2b0e26439204b31490a916593 243 Gene3D G3DSA:1.10.10.10 123 235 2.5E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21630 7e61654dcf2b530ed57a193bc4e724f3 808 Gene3D G3DSA:2.30.30.60 631 679 1.0E-11 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily APT56_21630 7e61654dcf2b530ed57a193bc4e724f3 808 Pfam PF12607 Protein of unknown function (DUF3772) 139 201 6.2E-18 T 11-10-2018 IPR022249 Domain of unknown function DUF3772 APT56_21630 7e61654dcf2b530ed57a193bc4e724f3 808 Pfam PF00924 Mechanosensitive ion channel 575 771 1.7E-38 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT56_21630 7e61654dcf2b530ed57a193bc4e724f3 808 SUPERFAMILY SSF50182 616 681 3.07E-15 T 11-10-2018 IPR010920 LSM domain superfamily APT56_21630 7e61654dcf2b530ed57a193bc4e724f3 808 SUPERFAMILY SSF82689 683 777 1.96E-12 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APT56_21630 7e61654dcf2b530ed57a193bc4e724f3 808 Gene3D G3DSA:3.30.70.100 688 776 1.5E-8 T 11-10-2018 APT56_21630 7e61654dcf2b530ed57a193bc4e724f3 808 SUPERFAMILY SSF82861 532 614 3.66E-9 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Pfam PF07695 7TM diverse intracellular signalling 191 387 1.1E-16 T 11-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Pfam PF00072 Response regulator receiver domain 696 804 4.2E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 665 1.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 613 623 1.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 628 646 1.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 609 1.8E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Gene3D G3DSA:1.10.287.130 407 502 3.9E-19 T 11-10-2018 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 553 667 1.0E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Gene3D G3DSA:2.60.40.2380 46 187 5.0E-18 T 11-10-2018 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 SMART SM00387 552 668 7.7E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_17185 651004eb6ba3576431c5cc09475a182e 894 SMART SM00388 443 506 1.1E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Gene3D G3DSA:3.40.50.2300 692 812 5.7E-22 T 11-10-2018 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 SUPERFAMILY SSF55874 516 666 4.06E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_17185 651004eb6ba3576431c5cc09475a182e 894 SUPERFAMILY SSF52172 692 812 6.26E-24 T 11-10-2018 IPR011006 CheY-like superfamily APT56_17185 651004eb6ba3576431c5cc09475a182e 894 SUPERFAMILY SSF47384 429 501 1.67E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 SMART SM00448 694 806 6.4E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Pfam PF07696 7TMR-DISM extracellular 2 51 178 4.1E-23 T 11-10-2018 IPR011622 7TM-DISM receptor, extracellular domain, type 2 APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Gene3D G3DSA:3.30.565.10 505 673 1.4E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_17185 651004eb6ba3576431c5cc09475a182e 894 Pfam PF00512 His Kinase A (phospho-acceptor) domain 444 501 1.2E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_19120 5d9603425f810713f3afddb1d3b3b13f 160 Pfam PF09722 Protein of unknown function (DUF2384) 108 157 1.2E-9 T 11-10-2018 IPR024467 Domain of unknown function DUF2384 APT56_07085 51d34da77f570d3bcdef5945a4316160 309 SUPERFAMILY SSF64397 3 245 1.96E-62 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 APT56_07085 51d34da77f570d3bcdef5945a4316160 309 Gene3D G3DSA:1.10.287.480 190 238 1.6E-10 T 11-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily APT56_07085 51d34da77f570d3bcdef5945a4316160 309 PIRSF PIRSF005261 1 298 5.0E-74 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APT56_07085 51d34da77f570d3bcdef5945a4316160 309 Hamap MF_00117 33 kDa chaperonin [hslO]. 2 297 28.91 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APT56_07085 51d34da77f570d3bcdef5945a4316160 309 Pfam PF01430 Hsp33 protein 3 286 3.6E-83 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APT56_07085 51d34da77f570d3bcdef5945a4316160 309 SUPERFAMILY SSF118352 237 295 1.44E-19 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 APT56_07085 51d34da77f570d3bcdef5945a4316160 309 Gene3D G3DSA:3.55.30.10 1 179 2.9E-59 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 APT56_07085 51d34da77f570d3bcdef5945a4316160 309 Gene3D G3DSA:3.90.1280.10 239 296 1.4E-21 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 APT56_08025 62597827658fd963caef83572620ff96 340 Gene3D G3DSA:3.40.190.10 129 315 6.1E-89 T 11-10-2018 APT56_08025 62597827658fd963caef83572620ff96 340 Gene3D G3DSA:3.40.190.10 28 301 6.1E-89 T 11-10-2018 APT56_08025 62597827658fd963caef83572620ff96 340 PIRSF PIRSF002825 1 332 9.7E-95 T 11-10-2018 IPR026045 Ferric binding protein APT56_08025 62597827658fd963caef83572620ff96 340 SUPERFAMILY SSF53850 25 329 1.42E-73 T 11-10-2018 APT56_08025 62597827658fd963caef83572620ff96 340 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 8 336 7.2E-160 T 11-10-2018 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative APT56_08025 62597827658fd963caef83572620ff96 340 Pfam PF13343 Bacterial extracellular solute-binding protein 73 313 9.1E-33 T 11-10-2018 APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 SUPERFAMILY SSF53850 94 295 4.89E-33 T 11-10-2018 APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 Pfam PF03466 LysR substrate binding domain 91 292 1.5E-32 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 66 2.3E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 Gene3D G3DSA:1.10.10.10 7 95 6.3E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 Gene3D G3DSA:3.40.190.10 164 260 2.2E-51 T 11-10-2018 APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 Gene3D G3DSA:3.40.190.10 104 288 2.2E-51 T 11-10-2018 APT56_21135 a4365d58f91a1c03ae3d1405141494f1 300 SUPERFAMILY SSF46785 3 82 5.22E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02315 00a2559d1bd4d272c2c7c30109b7dc99 246 Gene3D G3DSA:1.10.12.10 196 246 8.7E-9 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_02315 00a2559d1bd4d272c2c7c30109b7dc99 246 Gene3D G3DSA:3.90.226.10 4 195 1.2E-51 T 11-10-2018 APT56_02315 00a2559d1bd4d272c2c7c30109b7dc99 246 SUPERFAMILY SSF52096 5 246 4.54E-65 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_02315 00a2559d1bd4d272c2c7c30109b7dc99 246 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 244 4.1E-38 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_13790 adf8237848305d30a100e151c86bb72b 793 ProSitePatterns PS60002 Phosphoketolase signature 1. 141 147 - T 11-10-2018 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 APT56_13790 adf8237848305d30a100e151c86bb72b 793 SUPERFAMILY SSF52518 381 589 8.83E-21 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_13790 adf8237848305d30a100e151c86bb72b 793 Gene3D G3DSA:3.40.50.920 604 792 6.8E-67 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_13790 adf8237848305d30a100e151c86bb72b 793 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 396 573 4.8E-82 T 11-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 APT56_13790 adf8237848305d30a100e151c86bb72b 793 Pfam PF09364 XFP N-terminal domain 7 379 4.1E-168 T 11-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal APT56_13790 adf8237848305d30a100e151c86bb72b 793 SUPERFAMILY SSF52518 6 365 5.36E-67 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_13790 adf8237848305d30a100e151c86bb72b 793 Gene3D G3DSA:3.40.50.970 383 603 3.8E-99 T 11-10-2018 APT56_13790 adf8237848305d30a100e151c86bb72b 793 ProSitePatterns PS60003 Phosphoketolase signature 2. 154 172 - T 11-10-2018 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 APT56_13790 adf8237848305d30a100e151c86bb72b 793 Pfam PF09363 XFP C-terminal domain 584 785 5.6E-79 T 11-10-2018 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 APT56_13790 adf8237848305d30a100e151c86bb72b 793 PIRSF PIRSF017245 1 787 0.0 T 11-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 APT56_13790 adf8237848305d30a100e151c86bb72b 793 Gene3D G3DSA:3.40.50.970 2 380 1.7E-160 T 11-10-2018 APT56_15680 d0c28ebae0d9eed393475b6091ef0e4c 244 Pfam PF00005 ABC transporter 17 165 5.4E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15680 d0c28ebae0d9eed393475b6091ef0e4c 244 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15680 d0c28ebae0d9eed393475b6091ef0e4c 244 SUPERFAMILY SSF52540 1 235 2.73E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15680 d0c28ebae0d9eed393475b6091ef0e4c 244 SMART SM00382 26 221 2.4E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15680 d0c28ebae0d9eed393475b6091ef0e4c 244 PIRSF PIRSF039085 1 241 1.4E-107 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_15680 d0c28ebae0d9eed393475b6091ef0e4c 244 Gene3D G3DSA:3.40.50.300 1 242 1.3E-80 T 11-10-2018 APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 SUPERFAMILY SSF46955 3 108 4.03E-28 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 Pfam PF13411 MerR HTH family regulatory protein 4 71 1.1E-16 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 4.4E-9 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 4.4E-9 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 4.4E-9 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 Pfam PF07739 TipAS antibiotic-recognition domain 250 335 4.9E-5 T 11-10-2018 IPR012925 TipAS antibiotic-recognition domain APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 Pfam PF07739 TipAS antibiotic-recognition domain 154 228 2.0E-5 T 11-10-2018 IPR012925 TipAS antibiotic-recognition domain APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 SMART SM00422 3 72 7.3E-29 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15640 da0492483c9768ce3e470c9ff7bd55fd 342 Gene3D G3DSA:1.10.1660.10 4 229 2.3E-33 T 11-10-2018 APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PIRSF PIRSF000126 1 270 9.4E-72 T 11-10-2018 APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 2.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 2.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.3E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 Pfam PF00106 short chain dehydrogenase 13 197 2.2E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 8.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 8.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 8.1E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 Gene3D G3DSA:3.40.50.720 12 270 6.6E-67 T 11-10-2018 APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_02225 96d4e804a23f954994626b4d0a74dba1 278 SUPERFAMILY SSF51735 11 233 3.8E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_01585 63a178c374758db901ee47e4c247744f 466 Pfam PF00474 Sodium:solute symporter family 32 413 1.1E-34 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 APT56_01585 63a178c374758db901ee47e4c247744f 466 Gene3D G3DSA:1.20.1730.10 9 464 2.6E-73 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily APT56_01585 63a178c374758db901ee47e4c247744f 466 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 395 415 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site APT56_25520 7ba99e58d9633ede27f008b925536905 519 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 373 393 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT56_25520 7ba99e58d9633ede27f008b925536905 519 Gene3D G3DSA:3.30.420.40 1 260 2.7E-44 T 11-10-2018 APT56_25520 7ba99e58d9633ede27f008b925536905 519 PIRSF PIRSF000538 207 515 7.4E-48 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT56_25520 7ba99e58d9633ede27f008b925536905 519 PIRSF PIRSF000538 1 182 9.1E-31 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT56_25520 7ba99e58d9633ede27f008b925536905 519 SUPERFAMILY SSF53067 265 508 1.14E-49 T 11-10-2018 APT56_25520 7ba99e58d9633ede27f008b925536905 519 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 173 1.8E-23 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APT56_25520 7ba99e58d9633ede27f008b925536905 519 SUPERFAMILY SSF53067 3 266 8.87E-36 T 11-10-2018 APT56_25520 7ba99e58d9633ede27f008b925536905 519 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 272 458 8.4E-33 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APT56_25520 7ba99e58d9633ede27f008b925536905 519 Gene3D G3DSA:3.30.420.40 261 516 6.1E-58 T 11-10-2018 APT56_22270 5962e57a0b56be8723de2369c2257bf2 338 Gene3D G3DSA:3.40.190.10 140 263 1.4E-99 T 11-10-2018 APT56_22270 5962e57a0b56be8723de2369c2257bf2 338 PIRSF PIRSF017082 11 337 2.1E-72 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_22270 5962e57a0b56be8723de2369c2257bf2 338 SUPERFAMILY SSF53850 131 298 1.57E-10 T 11-10-2018 APT56_22270 5962e57a0b56be8723de2369c2257bf2 338 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 64 334 7.9E-74 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_22270 5962e57a0b56be8723de2369c2257bf2 338 Gene3D G3DSA:3.40.190.150 45 327 1.4E-99 T 11-10-2018 APT56_18140 a32878a2f2cc41846b22107888290f47 245 PIRSF PIRSF039137 4 242 4.8E-109 T 11-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 APT56_18140 a32878a2f2cc41846b22107888290f47 245 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_18140 a32878a2f2cc41846b22107888290f47 245 Pfam PF00005 ABC transporter 25 169 2.7E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_18140 a32878a2f2cc41846b22107888290f47 245 SMART SM00382 33 235 6.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18140 a32878a2f2cc41846b22107888290f47 245 Gene3D G3DSA:3.40.50.300 4 242 6.1E-64 T 11-10-2018 APT56_18140 a32878a2f2cc41846b22107888290f47 245 SUPERFAMILY SSF52540 7 240 4.66E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27100 6fd691b84399a452ba29cd0d201e56cf 212 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 33.445 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 APT56_27100 6fd691b84399a452ba29cd0d201e56cf 212 SUPERFAMILY SSF52016 3 177 2.35E-48 T 11-10-2018 APT56_27100 6fd691b84399a452ba29cd0d201e56cf 212 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 5 181 1.0E-52 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 APT56_27100 6fd691b84399a452ba29cd0d201e56cf 212 Gene3D G3DSA:3.20.19.10 2 177 3.0E-57 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 APT56_27100 6fd691b84399a452ba29cd0d201e56cf 212 Pfam PF00694 Aconitase C-terminal domain 6 120 3.3E-29 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 APT56_02980 371a927f9fce431f2af6ec0aec9a8e2f 478 Gene3D G3DSA:3.40.190.10 48 467 2.7E-37 T 11-10-2018 APT56_02980 371a927f9fce431f2af6ec0aec9a8e2f 478 SUPERFAMILY SSF53850 51 469 1.99E-32 T 11-10-2018 APT56_02980 371a927f9fce431f2af6ec0aec9a8e2f 478 Pfam PF13416 Bacterial extracellular solute-binding protein 70 367 2.0E-21 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_10995 0816b321811781fabfbfd4c8afb517a2 287 SUPERFAMILY SSF51182 2 286 7.27E-84 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_10995 0816b321811781fabfbfd4c8afb517a2 287 Pfam PF05726 Pirin C-terminal cupin domain 182 283 3.8E-28 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 APT56_10995 0816b321811781fabfbfd4c8afb517a2 287 Gene3D G3DSA:2.60.120.10 17 279 1.8E-84 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_10995 0816b321811781fabfbfd4c8afb517a2 287 PIRSF PIRSF006232 2 287 4.1E-90 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 APT56_10995 0816b321811781fabfbfd4c8afb517a2 287 Pfam PF02678 Pirin 20 127 3.9E-35 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 APT56_10995 0816b321811781fabfbfd4c8afb517a2 287 Gene3D G3DSA:2.60.120.10 149 253 1.8E-84 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_16480 333ede8451e0c0adbdcc7c7ed2178b09 178 SUPERFAMILY SSF50341 21 161 7.85E-25 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 APT56_16480 333ede8451e0c0adbdcc7c7ed2178b09 178 SMART SM00260 16 157 4.4E-12 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_16480 333ede8451e0c0adbdcc7c7ed2178b09 178 Pfam PF01584 CheW-like domain 21 157 2.2E-23 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_16480 333ede8451e0c0adbdcc7c7ed2178b09 178 Gene3D G3DSA:2.40.50.180 39 111 4.5E-17 T 11-10-2018 APT56_16480 333ede8451e0c0adbdcc7c7ed2178b09 178 Gene3D G3DSA:2.30.30.40 23 146 4.5E-17 T 11-10-2018 APT56_18915 9daef366e934f1ae84831b727a460069 567 Gene3D G3DSA:2.40.30.10 100 199 1.9E-20 T 11-10-2018 APT56_18915 9daef366e934f1ae84831b727a460069 567 Gene3D G3DSA:3.90.230.10 359 531 1.6E-22 T 11-10-2018 APT56_18915 9daef366e934f1ae84831b727a460069 567 SUPERFAMILY SSF54292 6 88 6.42E-16 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_18915 9daef366e934f1ae84831b727a460069 567 Pfam PF00970 Oxidoreductase FAD-binding domain 104 198 7.5E-7 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APT56_18915 9daef366e934f1ae84831b727a460069 567 SUPERFAMILY SSF55920 361 525 2.36E-27 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APT56_18915 9daef366e934f1ae84831b727a460069 567 Pfam PF00175 Oxidoreductase NAD-binding domain 214 314 4.0E-14 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_18915 9daef366e934f1ae84831b727a460069 567 Gene3D G3DSA:3.10.20.30 2 92 2.2E-14 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_18915 9daef366e934f1ae84831b727a460069 567 Pfam PF00557 Metallopeptidase family M24 363 517 6.3E-22 T 11-10-2018 IPR000994 Peptidase M24 APT56_18915 9daef366e934f1ae84831b727a460069 567 Gene3D G3DSA:3.40.50.80 207 337 4.6E-23 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_18915 9daef366e934f1ae84831b727a460069 567 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 17 80 4.7E-9 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_18915 9daef366e934f1ae84831b727a460069 567 SUPERFAMILY SSF63380 100 198 1.79E-20 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_18915 9daef366e934f1ae84831b727a460069 567 SUPERFAMILY SSF52343 207 334 6.42E-28 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_18915 9daef366e934f1ae84831b727a460069 567 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT56_18915 9daef366e934f1ae84831b727a460069 567 PRINTS PR00410 Phenol hydroxylase reductase family signature 131 143 3.0E-8 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_18915 9daef366e934f1ae84831b727a460069 567 PRINTS PR00410 Phenol hydroxylase reductase family signature 147 154 3.0E-8 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_18915 9daef366e934f1ae84831b727a460069 567 PRINTS PR00410 Phenol hydroxylase reductase family signature 238 247 3.0E-8 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_18915 9daef366e934f1ae84831b727a460069 567 PRINTS PR00410 Phenol hydroxylase reductase family signature 300 308 3.0E-8 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_18915 9daef366e934f1ae84831b727a460069 567 PRINTS PR00410 Phenol hydroxylase reductase family signature 213 232 3.0E-8 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_14270 f0f36a072f2ffedcdfb8adfda57bea5c 692 Gene3D G3DSA:2.40.170.20 162 692 1.7E-98 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_14270 f0f36a072f2ffedcdfb8adfda57bea5c 692 Pfam PF00593 TonB dependent receptor 235 691 3.4E-52 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_14270 f0f36a072f2ffedcdfb8adfda57bea5c 692 SUPERFAMILY SSF56935 10 692 1.14E-131 T 11-10-2018 APT56_14270 f0f36a072f2ffedcdfb8adfda57bea5c 692 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 675 692 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_14270 f0f36a072f2ffedcdfb8adfda57bea5c 692 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 149 2.5E-23 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_14270 f0f36a072f2ffedcdfb8adfda57bea5c 692 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 48 692 4.1E-86 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_14270 f0f36a072f2ffedcdfb8adfda57bea5c 692 Gene3D G3DSA:2.170.130.10 28 161 1.0E-32 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_24905 3dd39c50e3d10e5ba27eb8867d197bbd 522 Gene3D G3DSA:3.20.20.450 259 513 5.6E-79 T 11-10-2018 IPR035919 EAL domain superfamily APT56_24905 3dd39c50e3d10e5ba27eb8867d197bbd 522 SUPERFAMILY SSF141868 266 509 5.36E-75 T 11-10-2018 IPR035919 EAL domain superfamily APT56_24905 3dd39c50e3d10e5ba27eb8867d197bbd 522 SMART SM00052 260 502 6.6E-92 T 11-10-2018 IPR001633 EAL domain APT56_24905 3dd39c50e3d10e5ba27eb8867d197bbd 522 Pfam PF00563 EAL domain 266 497 1.4E-63 T 11-10-2018 IPR001633 EAL domain APT56_24905 3dd39c50e3d10e5ba27eb8867d197bbd 522 Pfam PF12792 CSS motif domain associated with EAL 40 234 1.6E-23 T 11-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 SUPERFAMILY SSF51735 4 245 2.11E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 189 0.0083 T 11-10-2018 APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.6E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 3.6E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.6E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 2.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 Gene3D G3DSA:3.40.50.720 1 245 1.1E-69 T 11-10-2018 APT56_06170 e1be178abba19bca32a3ba93d70e8d11 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 243 3.6E-51 T 11-10-2018 APT56_12150 7b4b790da966a1ffeaa580676119a6c0 142 Pfam PF02561 Flagellar protein FliS 23 131 2.4E-33 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 APT56_12150 7b4b790da966a1ffeaa580676119a6c0 142 SUPERFAMILY SSF101116 16 131 1.31E-32 T 11-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 APT56_12150 7b4b790da966a1ffeaa580676119a6c0 142 PIRSF PIRSF039090 9 141 3.8E-33 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 APT56_12150 7b4b790da966a1ffeaa580676119a6c0 142 Gene3D G3DSA:1.20.120.340 8 134 4.6E-34 T 11-10-2018 APT56_12150 7b4b790da966a1ffeaa580676119a6c0 142 TIGRFAM TIGR00208 fliS: flagellar protein FliS 15 134 2.2E-24 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 2.3E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 2.3E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 SUPERFAMILY SSF46785 9 79 3.15E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 Gene3D G3DSA:1.10.10.10 7 81 1.6E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 SMART SM00345 16 75 2.8E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 Pfam PF07729 FCD domain 99 225 2.9E-23 T 11-10-2018 IPR011711 GntR, C-terminal APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 Gene3D G3DSA:1.20.120.530 84 241 2.4E-30 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 2.6E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 SMART SM00895 99 226 1.5E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_27510 86326fbc4ef5f79d8f02e15e108a918e 252 SUPERFAMILY SSF48008 96 233 7.19E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Gene3D G3DSA:3.10.330.110 586 648 0.0 T 11-10-2018 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 885 22.413 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 SUPERFAMILY SSF47323 682 884 4.49E-29 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Pfam PF09334 tRNA synthetases class I (M) 44 177 1.7E-17 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 435 590 9.6E-9 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Gene3D G3DSA:3.90.740.10 234 432 0.0 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Pfam PF08264 Anticodon-binding domain of tRNA 724 847 2.8E-14 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Gene3D G3DSA:1.10.730.10 9 817 0.0 T 11-10-2018 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 SUPERFAMILY SSF50677 234 432 8.79E-51 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 48 59 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 SUPERFAMILY SSF52374 7 687 5.63E-144 T 11-10-2018 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 191 204 1.8E-48 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 576 586 1.8E-48 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 159 175 1.8E-48 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 505 523 1.8E-48 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 543 565 1.8E-48 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 222 241 1.8E-48 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 PRINTS PR00985 Leucyl-tRNA synthetase signature 133 150 1.8E-48 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 228 420 8.5E-66 T 11-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Gene3D G3DSA:3.10.20.590 827 885 4.9E-20 T 11-10-2018 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 26 884 0.0 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APT56_21495 07bf6c860446e7462224e4c1b037d7ba 885 Gene3D G3DSA:3.40.50.620 39 585 0.0 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_11400 5d68b45e881511a6b300fb195304346d 346 SUPERFAMILY SSF53822 70 341 2.02E-71 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_11400 5d68b45e881511a6b300fb195304346d 346 Gene3D G3DSA:3.40.50.2300 173 302 6.6E-76 T 11-10-2018 APT56_11400 5d68b45e881511a6b300fb195304346d 346 SUPERFAMILY SSF47413 6 69 6.75E-11 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_11400 5d68b45e881511a6b300fb195304346d 346 SMART SM00354 6 81 5.1E-17 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_11400 5d68b45e881511a6b300fb195304346d 346 Pfam PF13377 Periplasmic binding protein-like domain 181 340 2.6E-34 T 11-10-2018 APT56_11400 5d68b45e881511a6b300fb195304346d 346 Gene3D G3DSA:1.10.260.40 1 64 1.1E-15 T 11-10-2018 APT56_11400 5d68b45e881511a6b300fb195304346d 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 58 7.5E-7 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_11400 5d68b45e881511a6b300fb195304346d 346 Gene3D G3DSA:3.40.50.2300 65 319 6.6E-76 T 11-10-2018 APT56_02255 2b375374f689d2a6c7430fae609890fc 336 Gene3D G3DSA:3.40.50.300 6 336 4.4E-96 T 11-10-2018 APT56_02255 2b375374f689d2a6c7430fae609890fc 336 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 247 311 4.5E-17 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_02255 2b375374f689d2a6c7430fae609890fc 336 SUPERFAMILY SSF52540 9 267 2.61E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02255 2b375374f689d2a6c7430fae609890fc 336 SMART SM00382 53 245 2.6E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02255 2b375374f689d2a6c7430fae609890fc 336 Pfam PF00005 ABC transporter 45 196 3.8E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_02255 2b375374f689d2a6c7430fae609890fc 336 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 245 331 1.7E-28 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_02255 2b375374f689d2a6c7430fae609890fc 336 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_19650 80845522b698fb56a4db85bed6ce367e 399 SUPERFAMILY SSF53822 26 394 2.59E-75 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_19650 80845522b698fb56a4db85bed6ce367e 399 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 4.9E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_19650 80845522b698fb56a4db85bed6ce367e 399 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 4.9E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_19650 80845522b698fb56a4db85bed6ce367e 399 Gene3D G3DSA:3.40.50.2300 143 281 2.0E-77 T 11-10-2018 APT56_19650 80845522b698fb56a4db85bed6ce367e 399 Pfam PF13458 Periplasmic binding protein 26 381 3.5E-60 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_19650 80845522b698fb56a4db85bed6ce367e 399 Gene3D G3DSA:3.40.50.2300 27 345 2.0E-77 T 11-10-2018 APT56_14730 d78bf3e6830a710c767c432daf81436c 156 SUPERFAMILY SSF69635 22 126 5.02E-5 T 11-10-2018 APT56_14730 d78bf3e6830a710c767c432daf81436c 156 Gene3D G3DSA:3.30.1460.10 13 131 5.0E-7 T 11-10-2018 APT56_19365 343777654be5043592efff8df503ee67 762 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 325 564 4.7E-33 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT56_19365 343777654be5043592efff8df503ee67 762 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 54 194 1.6E-13 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT56_19365 343777654be5043592efff8df503ee67 762 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 627 707 5.6E-19 T 11-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 APT56_19365 343777654be5043592efff8df503ee67 762 Gene3D G3DSA:3.30.365.10 360 453 5.0E-47 T 11-10-2018 APT56_19365 343777654be5043592efff8df503ee67 762 Gene3D G3DSA:3.30.365.10 617 761 1.3E-41 T 11-10-2018 APT56_19365 343777654be5043592efff8df503ee67 762 SMART SM01008 217 306 5.9E-26 T 11-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead APT56_19365 343777654be5043592efff8df503ee67 762 Gene3D G3DSA:3.30.365.10 50 187 6.8E-22 T 11-10-2018 APT56_19365 343777654be5043592efff8df503ee67 762 Gene3D G3DSA:3.30.365.10 334 558 5.0E-47 T 11-10-2018 APT56_19365 343777654be5043592efff8df503ee67 762 SUPERFAMILY SSF56003 52 250 3.24E-39 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 APT56_19365 343777654be5043592efff8df503ee67 762 SUPERFAMILY SSF56003 328 758 1.16E-108 T 11-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 APT56_19365 343777654be5043592efff8df503ee67 762 PIRSF PIRSF036389 1 762 1.1E-238 T 11-10-2018 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related APT56_19365 343777654be5043592efff8df503ee67 762 Gene3D G3DSA:3.90.1170.50 188 300 1.9E-10 T 11-10-2018 APT56_11025 61f4e9557518e7d8e490986e6ba5a40c 149 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 141 32.379 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 APT56_11025 61f4e9557518e7d8e490986e6ba5a40c 149 Pfam PF03100 CcmE 5 130 4.1E-45 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 APT56_11025 61f4e9557518e7d8e490986e6ba5a40c 149 SUPERFAMILY SSF82093 30 136 1.44E-38 T 11-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 APT56_11025 61f4e9557518e7d8e490986e6ba5a40c 149 Gene3D G3DSA:2.40.50.140 30 137 1.2E-38 T 11-10-2018 APT56_21445 fb4e63594ac2447be720c34fd362965d 401 Gene3D G3DSA:3.40.50.2300 148 373 7.0E-123 T 11-10-2018 APT56_21445 fb4e63594ac2447be720c34fd362965d 401 SUPERFAMILY SSF53822 29 384 3.36E-84 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_21445 fb4e63594ac2447be720c34fd362965d 401 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 338 353 1.4E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_21445 fb4e63594ac2447be720c34fd362965d 401 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 1.4E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_21445 fb4e63594ac2447be720c34fd362965d 401 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 286 299 1.4E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_21445 fb4e63594ac2447be720c34fd362965d 401 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 1.4E-7 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_21445 fb4e63594ac2447be720c34fd362965d 401 Pfam PF13458 Periplasmic binding protein 30 366 3.6E-72 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_21445 fb4e63594ac2447be720c34fd362965d 401 Gene3D G3DSA:3.40.50.2300 49 361 7.0E-123 T 11-10-2018 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 SMART SM00846 3 155 3.9E-94 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 SUPERFAMILY SSF51735 3 176 6.35E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 327 2.5E-128 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 Gene3D G3DSA:3.30.360.10 154 317 9.0E-152 T 11-10-2018 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 Gene3D G3DSA:3.40.50.720 4 327 9.0E-152 T 11-10-2018 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 106 4.1E-39 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 1.3E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.3E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 1.3E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.3E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.3E-39 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 PIRSF PIRSF000149 1 336 1.0E-135 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 SUPERFAMILY SSF55347 155 316 9.82E-70 T 11-10-2018 APT56_22600 91f605a5df4321f58bb3bcb030acab5a 336 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 315 1.2E-63 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_23210 4fce7066115575d72d767b98ac69334f 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 115 6.8E-6 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_23210 4fce7066115575d72d767b98ac69334f 142 PIRSF PIRSF039020 1 122 7.0E-46 T 11-10-2018 IPR026275 Glyoxalase/dioxygenase/EhpR APT56_23210 4fce7066115575d72d767b98ac69334f 142 SUPERFAMILY SSF54593 6 127 2.2E-21 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_23210 4fce7066115575d72d767b98ac69334f 142 Gene3D G3DSA:3.30.720.110 66 121 1.2E-24 T 11-10-2018 APT56_23210 4fce7066115575d72d767b98ac69334f 142 Gene3D G3DSA:3.30.720.120 1 54 4.2E-25 T 11-10-2018 APT56_24515 1f4b7033220b30bc20e0ec142f22731f 186 SUPERFAMILY SSF89392 16 185 1.18E-28 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX APT56_24515 1f4b7033220b30bc20e0ec142f22731f 186 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 48 161 1.2E-19 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 APT56_24515 1f4b7033220b30bc20e0ec142f22731f 186 Gene3D G3DSA:2.50.20.10 28 185 4.9E-28 T 11-10-2018 APT56_24515 1f4b7033220b30bc20e0ec142f22731f 186 Pfam PF03550 Outer membrane lipoprotein LolB 31 185 3.9E-32 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 APT56_21180 3108087d44f2f0590119b4c218b7e74f 351 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 247 264 - T 11-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 APT56_21180 3108087d44f2f0590119b4c218b7e74f 351 Gene3D G3DSA:3.20.20.300 3 349 1.6E-120 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 APT56_21180 3108087d44f2f0590119b4c218b7e74f 351 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 13 350 52.65 T 11-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 APT56_21180 3108087d44f2f0590119b4c218b7e74f 351 SUPERFAMILY SSF51445 13 328 8.84E-84 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_21180 3108087d44f2f0590119b4c218b7e74f 351 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 15 303 3.2E-75 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 APT56_18800 2cc4326627b78d0e3a7e34e160dbb372 325 Gene3D G3DSA:3.40.190.10 128 251 1.5E-101 T 11-10-2018 APT56_18800 2cc4326627b78d0e3a7e34e160dbb372 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 322 2.2E-67 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18800 2cc4326627b78d0e3a7e34e160dbb372 325 Gene3D G3DSA:3.40.190.150 30 316 1.5E-101 T 11-10-2018 APT56_18800 2cc4326627b78d0e3a7e34e160dbb372 325 PIRSF PIRSF017082 1 325 3.7E-72 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18800 2cc4326627b78d0e3a7e34e160dbb372 325 SUPERFAMILY SSF53850 116 285 1.44E-6 T 11-10-2018 APT56_02265 bec7a9aae98cbed7da98d3d49444dff3 305 Gene3D G3DSA:1.10.3720.10 92 302 2.9E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02265 bec7a9aae98cbed7da98d3d49444dff3 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 304 2.0E-32 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_02265 bec7a9aae98cbed7da98d3d49444dff3 305 SUPERFAMILY SSF161098 99 292 1.57E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02265 bec7a9aae98cbed7da98d3d49444dff3 305 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 67 2.1E-5 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_14775 ee4538a6588d4949be32f253e1bd66b6 258 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_14775 ee4538a6588d4949be32f253e1bd66b6 258 Gene3D G3DSA:3.40.50.300 2 256 1.2E-74 T 11-10-2018 APT56_14775 ee4538a6588d4949be32f253e1bd66b6 258 Pfam PF00005 ABC transporter 25 168 5.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14775 ee4538a6588d4949be32f253e1bd66b6 258 SMART SM00382 33 218 2.9E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14775 ee4538a6588d4949be32f253e1bd66b6 258 SUPERFAMILY SSF52540 4 243 7.01E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11805 c01441ec71099163b700fdf5dd2dd78c 204 Gene3D G3DSA:3.40.30.10 37 202 5.8E-47 T 11-10-2018 APT56_11805 c01441ec71099163b700fdf5dd2dd78c 204 SUPERFAMILY SSF52833 44 201 2.98E-46 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_11805 c01441ec71099163b700fdf5dd2dd78c 204 Pfam PF02630 SCO1/SenC 44 179 6.4E-38 T 11-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_27165 41131e777d34e4145d0db39a9888337a 387 Gene3D G3DSA:3.30.300.10 13 274 2.1E-176 T 11-10-2018 APT56_27165 41131e777d34e4145d0db39a9888337a 387 Pfam PF02772 S-adenosylmethionine synthetase, central domain 119 235 1.6E-45 T 11-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 120 130 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 SUPERFAMILY SSF55973 5 112 2.04E-45 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 237 375 1.2E-67 T 11-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 263 271 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 SUPERFAMILY SSF55973 237 385 2.79E-67 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 103 4.1E-40 T 11-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 PIRSF PIRSF000497 1 387 4.3E-170 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 SUPERFAMILY SSF55973 114 236 1.61E-52 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 387 56.558 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 Gene3D G3DSA:3.30.300.10 104 379 2.1E-176 T 11-10-2018 APT56_27165 41131e777d34e4145d0db39a9888337a 387 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 385 1.2E-181 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APT56_27165 41131e777d34e4145d0db39a9888337a 387 Gene3D G3DSA:3.30.300.10 7 237 2.1E-176 T 11-10-2018 APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 104 271 2.2E-35 T 11-10-2018 IPR000160 GGDEF domain APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 SUPERFAMILY SSF55073 113 273 3.77E-45 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 Pfam PF08448 PAS fold 2 98 3.2E-9 T 11-10-2018 IPR013656 PAS fold-4 APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 Pfam PF00990 Diguanylate cyclase, GGDEF domain 108 266 3.9E-42 T 11-10-2018 IPR000160 GGDEF domain APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 Gene3D G3DSA:3.30.450.20 1 96 3.3E-24 T 11-10-2018 APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 Gene3D G3DSA:3.20.20.450 283 536 7.0E-91 T 11-10-2018 IPR035919 EAL domain superfamily APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 SUPERFAMILY SSF141868 288 535 1.31E-79 T 11-10-2018 IPR035919 EAL domain superfamily APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 Pfam PF00563 EAL domain 289 522 4.3E-66 T 11-10-2018 IPR001633 EAL domain APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 SMART SM00267 97 272 4.7E-60 T 11-10-2018 IPR000160 GGDEF domain APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 SMART SM00052 282 528 1.2E-100 T 11-10-2018 IPR001633 EAL domain APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 Gene3D G3DSA:3.30.70.270 102 282 4.7E-54 T 11-10-2018 APT56_18840 94e38dc2159482fa48b40a2401b83b57 537 SUPERFAMILY SSF55785 2 62 1.3E-10 T 11-10-2018 IPR035965 PAS domain superfamily APT56_21240 bc357fa064a78156bae522dcd5e05c9d 252 PIRSF PIRSF004846 4 252 6.0E-76 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 APT56_21240 bc357fa064a78156bae522dcd5e05c9d 252 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 32 248 4.1E-59 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 APT56_21240 bc357fa064a78156bae522dcd5e05c9d 252 Pfam PF13531 Bacterial extracellular solute-binding protein 27 250 6.6E-53 T 11-10-2018 APT56_21240 bc357fa064a78156bae522dcd5e05c9d 252 Gene3D G3DSA:3.40.190.10 106 212 2.4E-74 T 11-10-2018 APT56_21240 bc357fa064a78156bae522dcd5e05c9d 252 Gene3D G3DSA:3.40.190.10 29 249 2.4E-74 T 11-10-2018 APT56_21240 bc357fa064a78156bae522dcd5e05c9d 252 SUPERFAMILY SSF53850 26 251 2.14E-67 T 11-10-2018 APT56_06640 4cdfc143a7eb276cff15eeeef3abf756 257 SUPERFAMILY SSF52540 4 247 1.63E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06640 4cdfc143a7eb276cff15eeeef3abf756 257 Pfam PF00005 ABC transporter 22 177 6.4E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_06640 4cdfc143a7eb276cff15eeeef3abf756 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 246 2.6E-6 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_06640 4cdfc143a7eb276cff15eeeef3abf756 257 SMART SM00382 30 224 1.4E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_06640 4cdfc143a7eb276cff15eeeef3abf756 257 Gene3D G3DSA:3.40.50.300 2 247 2.2E-58 T 11-10-2018 APT56_10965 cd64cf3a4cc280ac3b9be9784c21825d 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 285 1.4E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_10965 cd64cf3a4cc280ac3b9be9784c21825d 285 Gene3D G3DSA:1.10.3720.10 71 285 1.8E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_10965 cd64cf3a4cc280ac3b9be9784c21825d 285 SUPERFAMILY SSF161098 78 284 4.32E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11380 4c3bfcc0ea5990436a23d3aa71991373 397 Gene3D G3DSA:1.20.1250.20 20 392 7.6E-40 T 11-10-2018 APT56_11380 4c3bfcc0ea5990436a23d3aa71991373 397 SUPERFAMILY SSF103473 11 392 4.19E-50 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_11380 4c3bfcc0ea5990436a23d3aa71991373 397 Pfam PF07690 Major Facilitator Superfamily 30 360 8.3E-32 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 SUPERFAMILY SSF46785 4 63 1.24E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 3.0E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 3.0E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 3.0E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 3.3E-19 T 11-10-2018 APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 Gene3D G3DSA:3.30.70.920 56 149 1.7E-22 T 11-10-2018 APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 Gene3D G3DSA:1.10.10.10 1 55 5.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 3.9E-18 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 SUPERFAMILY SSF54909 66 153 2.41E-17 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_15325 d8b8d9238c7f0b53301ce2eea77cbc8c 155 SMART SM00344 4 113 4.6E-47 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_27105 7744a5e8be71022ca809103f29135746 473 Gene3D G3DSA:3.30.499.10 331 473 9.5E-50 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 ProSitePatterns PS01244 Aconitase family signature 2. 403 416 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 470 52.067 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 Pfam PF00330 Aconitase family (aconitate hydratase) 9 461 3.3E-141 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 Gene3D G3DSA:3.30.499.20 5 290 1.7E-87 T 11-10-2018 APT56_27105 7744a5e8be71022ca809103f29135746 473 SUPERFAMILY SSF53732 3 472 7.06E-154 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 112 120 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 403 416 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 213 226 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 137 152 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 290 304 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 347 358 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 86 99 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 199 212 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 PRINTS PR00415 Aconitase family signature 123 136 2.2E-42 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 ProSitePatterns PS00450 Aconitase family signature 1. 343 359 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_27105 7744a5e8be71022ca809103f29135746 473 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 5 469 6.6E-191 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 APT56_01725 71009676151b3efe87c6f0909a0a71da 567 Pfam PF05977 Transmembrane secretion effector 30 547 1.9E-188 T 11-10-2018 IPR010290 Transmembrane secretion effector APT56_01725 71009676151b3efe87c6f0909a0a71da 567 Gene3D G3DSA:1.20.1250.20 38 422 3.8E-37 T 11-10-2018 APT56_01725 71009676151b3efe87c6f0909a0a71da 567 SUPERFAMILY SSF103473 39 422 7.46E-47 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_03350 a4c9afed7642c6ebf1ee105213c6119a 186 Pfam PF02325 YGGT family 110 176 2.2E-15 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 APT56_03350 a4c9afed7642c6ebf1ee105213c6119a 186 Pfam PF02325 YGGT family 12 80 3.2E-14 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 APT56_03470 6073c240059fa0ccbf34a113b5781dfd 262 Pfam PF00005 ABC transporter 17 178 1.7E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_03470 6073c240059fa0ccbf34a113b5781dfd 262 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 248 4.6E-11 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_03470 6073c240059fa0ccbf34a113b5781dfd 262 Gene3D G3DSA:3.40.50.300 1 258 4.9E-68 T 11-10-2018 APT56_03470 6073c240059fa0ccbf34a113b5781dfd 262 SUPERFAMILY SSF52540 2 249 9.89E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03470 6073c240059fa0ccbf34a113b5781dfd 262 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_03470 6073c240059fa0ccbf34a113b5781dfd 262 SMART SM00382 26 225 1.3E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15845 3585a67a7f37715f61ba36a486749040 142 Gene3D G3DSA:3.10.180.10 8 141 1.2E-44 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_15845 3585a67a7f37715f61ba36a486749040 142 SUPERFAMILY SSF54593 1 136 3.93E-32 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_15845 3585a67a7f37715f61ba36a486749040 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 124 1.3E-6 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_16135 c385b6edf2a1ca3e7d03421e2a056780 497 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 491 4.2E-191 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath APT56_16135 c385b6edf2a1ca3e7d03421e2a056780 497 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 491 5.2E-218 T 11-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath APT56_24305 aefe8cccb3fdcf785df17dcb3776c94f 391 Gene3D G3DSA:3.40.50.2300 26 350 2.5E-96 T 11-10-2018 APT56_24305 aefe8cccb3fdcf785df17dcb3776c94f 391 Gene3D G3DSA:3.40.50.2300 142 351 2.5E-96 T 11-10-2018 APT56_24305 aefe8cccb3fdcf785df17dcb3776c94f 391 SUPERFAMILY SSF53822 25 372 1.01E-83 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_24305 aefe8cccb3fdcf785df17dcb3776c94f 391 Pfam PF13458 Periplasmic binding protein 25 357 5.3E-75 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_15600 38519d5c5253cd36f3461ae482bba148 268 SUPERFAMILY SSF46785 20 93 7.46E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15600 38519d5c5253cd36f3461ae482bba148 268 SMART SM00346 19 110 6.1E-15 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_15600 38519d5c5253cd36f3461ae482bba148 268 Pfam PF09339 IclR helix-turn-helix domain 21 72 1.9E-12 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_15600 38519d5c5253cd36f3461ae482bba148 268 SUPERFAMILY SSF55781 85 263 3.2E-40 T 11-10-2018 APT56_15600 38519d5c5253cd36f3461ae482bba148 268 Pfam PF01614 Bacterial transcriptional regulator 142 259 5.6E-19 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_15600 38519d5c5253cd36f3461ae482bba148 268 Gene3D G3DSA:1.10.10.10 18 94 9.7E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15600 38519d5c5253cd36f3461ae482bba148 268 Gene3D G3DSA:3.30.450.40 95 267 5.0E-39 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_03635 139131db7b960f99a28d95f523e960a2 597 Pfam PF01734 Patatin-like phospholipase 167 412 2.0E-18 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 APT56_03635 139131db7b960f99a28d95f523e960a2 597 Gene3D G3DSA:3.40.1090.20 162 450 5.1E-51 T 11-10-2018 APT56_03635 139131db7b960f99a28d95f523e960a2 597 SUPERFAMILY SSF52151 166 414 1.44E-20 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 13 548 5.7E-282 T 11-10-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622|MetaCyc: PWY-7900 APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 Gene3D G3DSA:3.90.1200.10 807 1110 4.8E-54 T 11-10-2018 APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 SUPERFAMILY SSF51445 12 465 1.72E-128 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 Gene3D G3DSA:3.90.400.10 111 181 1.9E-218 T 11-10-2018 APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 SUPERFAMILY SSF56112 748 1058 1.45E-16 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 564 1095 8.0E-166 T 11-10-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 Pfam PF00128 Alpha amylase, catalytic domain 36 389 1.4E-71 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 Gene3D G3DSA:3.20.20.80 13 462 1.9E-218 T 11-10-2018 APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 SUPERFAMILY SSF51011 475 547 6.69E-19 T 11-10-2018 APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 SMART SM00642 21 420 6.2E-104 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 Pfam PF16657 Maltogenic Amylase, C-terminal domain 468 545 1.9E-30 T 11-10-2018 IPR032091 Maltogenic Amylase, C-terminal APT56_13680 ec772dd0f85907467c0f11f7baaedadf 1113 Gene3D G3DSA:2.60.40.1180 468 558 2.2E-32 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 SUPERFAMILY SSF53067 4 198 3.88E-56 T 11-10-2018 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 Gene3D G3DSA:3.30.420.40 4 197 1.9E-58 T 11-10-2018 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 PIRSF PIRSF000722 1 394 2.7E-132 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 SUPERFAMILY SSF53067 161 391 7.9E-74 T 11-10-2018 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 PRINTS PR00471 Acetate kinase family signature 205 226 3.0E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 PRINTS PR00471 Acetate kinase family signature 176 189 3.0E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 PRINTS PR00471 Acetate kinase family signature 298 311 3.0E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 PRINTS PR00471 Acetate kinase family signature 372 384 3.0E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 PRINTS PR00471 Acetate kinase family signature 5 16 3.0E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 PRINTS PR00471 Acetate kinase family signature 320 336 3.0E-37 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 Pfam PF00871 Acetokinase family 5 385 8.7E-101 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 Hamap MF_00020 Acetate kinase [ackA]. 1 394 152.147 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 Gene3D G3DSA:3.30.420.40 200 394 5.0E-65 T 11-10-2018 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 TIGRFAM TIGR00016 ackA: acetate kinase 2 391 3.9E-101 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_22575 6b3ae6be46fd5b84632068cb1e9095a2 394 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 205 222 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APT56_27730 e767f0d7a4658323aa95e7bc4f03338c 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 2.6E-40 T 11-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27730 e767f0d7a4658323aa95e7bc4f03338c 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 11-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27730 e767f0d7a4658323aa95e7bc4f03338c 179 SUPERFAMILY SSF55282 3 179 5.18E-76 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27730 e767f0d7a4658323aa95e7bc4f03338c 179 Pfam PF00281 Ribosomal protein L5 25 80 8.3E-26 T 11-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27730 e767f0d7a4658323aa95e7bc4f03338c 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 43.43 T 11-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27730 e767f0d7a4658323aa95e7bc4f03338c 179 PIRSF PIRSF002161 1 179 3.3E-62 T 11-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27730 e767f0d7a4658323aa95e7bc4f03338c 179 Gene3D G3DSA:3.30.1440.10 1 179 1.3E-76 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_21050 2e4cf61316830d8c976f73e0242cdc1f 496 Pfam PF13746 4Fe-4S dicluster domain 232 338 6.6E-43 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_21050 2e4cf61316830d8c976f73e0242cdc1f 496 Gene3D G3DSA:2.60.40.10 374 494 1.1E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_21050 2e4cf61316830d8c976f73e0242cdc1f 496 SUPERFAMILY SSF54862 118 374 6.21E-34 T 11-10-2018 APT56_21050 2e4cf61316830d8c976f73e0242cdc1f 496 Pfam PF12801 4Fe-4S binding domain 108 150 7.0E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_21050 2e4cf61316830d8c976f73e0242cdc1f 496 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 285 296 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_21050 2e4cf61316830d8c976f73e0242cdc1f 496 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 54 483 1.2E-150 T 11-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 APT56_21050 2e4cf61316830d8c976f73e0242cdc1f 496 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 309 320 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_21050 2e4cf61316830d8c976f73e0242cdc1f 496 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 373 495 1.2E-25 T 11-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain APT56_03005 32dc3eccacc289c5492e9df1e007314c 164 SUPERFAMILY SSF46785 13 150 1.9E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03005 32dc3eccacc289c5492e9df1e007314c 164 Pfam PF01047 MarR family 47 104 7.3E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_03005 32dc3eccacc289c5492e9df1e007314c 164 ProSitePatterns PS01117 MarR-type HTH domain signature. 79 113 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_03005 32dc3eccacc289c5492e9df1e007314c 164 Gene3D G3DSA:1.10.10.10 7 154 7.0E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03005 32dc3eccacc289c5492e9df1e007314c 164 SMART SM00347 39 140 5.5E-20 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_03005 32dc3eccacc289c5492e9df1e007314c 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 9.5E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_03005 32dc3eccacc289c5492e9df1e007314c 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 9.5E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_03005 32dc3eccacc289c5492e9df1e007314c 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 96 9.5E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_13125 ff540424e088330c0540762f82bd26ab 308 Gene3D G3DSA:3.40.190.10 90 298 3.3E-58 T 11-10-2018 APT56_13125 ff540424e088330c0540762f82bd26ab 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 3.2E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13125 ff540424e088330c0540762f82bd26ab 308 Pfam PF03466 LysR substrate binding domain 96 303 1.1E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_13125 ff540424e088330c0540762f82bd26ab 308 SUPERFAMILY SSF53850 90 301 7.7E-39 T 11-10-2018 APT56_13125 ff540424e088330c0540762f82bd26ab 308 Gene3D G3DSA:3.40.190.10 172 274 3.3E-58 T 11-10-2018 APT56_13125 ff540424e088330c0540762f82bd26ab 308 SUPERFAMILY SSF46785 2 85 8.89E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13125 ff540424e088330c0540762f82bd26ab 308 Gene3D G3DSA:1.10.10.10 1 88 5.3E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21350 ca4da3172a33687c9144094bac936a3c 302 Gene3D G3DSA:3.40.190.10 170 274 8.5E-57 T 11-10-2018 APT56_21350 ca4da3172a33687c9144094bac936a3c 302 Pfam PF03466 LysR substrate binding domain 97 298 2.5E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21350 ca4da3172a33687c9144094bac936a3c 302 SUPERFAMILY SSF53850 97 301 4.07E-37 T 11-10-2018 APT56_21350 ca4da3172a33687c9144094bac936a3c 302 Gene3D G3DSA:1.10.10.10 6 93 6.3E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21350 ca4da3172a33687c9144094bac936a3c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21350 ca4da3172a33687c9144094bac936a3c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21350 ca4da3172a33687c9144094bac936a3c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21350 ca4da3172a33687c9144094bac936a3c 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 8.2E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21350 ca4da3172a33687c9144094bac936a3c 302 Gene3D G3DSA:3.40.190.10 99 284 8.5E-57 T 11-10-2018 APT56_21350 ca4da3172a33687c9144094bac936a3c 302 SUPERFAMILY SSF46785 5 116 1.58E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 8.4E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 SUPERFAMILY SSF53850 97 297 1.66E-15 T 11-10-2018 APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 Gene3D G3DSA:3.40.190.290 96 298 2.1E-12 T 11-10-2018 APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 SUPERFAMILY SSF46785 3 82 4.89E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 Gene3D G3DSA:1.10.10.10 5 93 1.8E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25545 725e80bf8feda9cc2cef8dadb2a62094 309 Pfam PF03466 LysR substrate binding domain 97 293 1.7E-13 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_18440 cddffa4356e165e12ed610f9384e1da7 319 Gene3D G3DSA:3.40.190.10 121 244 1.8E-107 T 11-10-2018 APT56_18440 cddffa4356e165e12ed610f9384e1da7 319 PIRSF PIRSF017082 1 319 1.4E-76 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18440 cddffa4356e165e12ed610f9384e1da7 319 SUPERFAMILY SSF53850 109 280 5.16E-6 T 11-10-2018 APT56_18440 cddffa4356e165e12ed610f9384e1da7 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 42 315 2.1E-76 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18440 cddffa4356e165e12ed610f9384e1da7 319 Gene3D G3DSA:3.40.190.150 23 309 1.8E-107 T 11-10-2018 APT56_21620 191a3580907c2fd5b07d6f8034b7313f 505 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 322 463 7.5E-42 T 11-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain APT56_21620 191a3580907c2fd5b07d6f8034b7313f 505 SUPERFAMILY SSF100950 227 494 2.76E-78 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_21620 191a3580907c2fd5b07d6f8034b7313f 505 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 12 494 3.0E-229 T 11-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 APT56_21620 191a3580907c2fd5b07d6f8034b7313f 505 Gene3D G3DSA:3.40.1080.10 13 182 2.7E-17 T 11-10-2018 APT56_21620 191a3580907c2fd5b07d6f8034b7313f 505 SUPERFAMILY SSF100950 4 222 1.62E-71 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_21620 191a3580907c2fd5b07d6f8034b7313f 505 Gene3D G3DSA:3.40.1080.20 336 476 1.0E-39 T 11-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily APT56_21620 191a3580907c2fd5b07d6f8034b7313f 505 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 14 215 6.8E-31 T 11-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 SMART SM00388 513 585 7.4E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 PIRSF PIRSF037532 1 757 8.8E-237 T 11-10-2018 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 SMART SM00387 636 754 1.5E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 SUPERFAMILY SSF47384 502 582 7.85E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 SUPERFAMILY SSF55785 374 503 2.28E-10 T 11-10-2018 IPR035965 PAS domain superfamily APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 Pfam PF00512 His Kinase A (phospho-acceptor) domain 514 581 2.1E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 Pfam PF08448 PAS fold 388 505 5.8E-6 T 11-10-2018 IPR013656 PAS fold-4 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 Gene3D G3DSA:3.30.450.20 372 503 3.7E-13 T 11-10-2018 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 Gene3D G3DSA:3.30.565.10 587 755 3.5E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 636 749 4.4E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 SUPERFAMILY SSF55874 574 751 1.7E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 Gene3D G3DSA:1.20.1480.50 287 371 2.9E-9 T 11-10-2018 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 SUPERFAMILY SSF158472 317 365 1.96E-6 T 11-10-2018 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 699 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 703 713 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 714 732 1.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 Pfam PF00672 HAMP domain 316 364 1.3E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 Gene3D G3DSA:1.10.287.130 504 582 1.0E-10 T 11-10-2018 APT56_26455 36b9c7a1ad734b584b58187d1607c619 773 SMART SM00304 316 368 7.3E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_16920 7b1a288d9b06e80f95a85e82900e48bd 705 SUPERFAMILY SSF56935 17 705 1.93E-129 T 11-10-2018 APT56_16920 7b1a288d9b06e80f95a85e82900e48bd 705 Gene3D G3DSA:2.40.170.20 171 705 3.4E-126 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_16920 7b1a288d9b06e80f95a85e82900e48bd 705 Gene3D G3DSA:2.170.130.10 34 170 1.9E-39 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_16920 7b1a288d9b06e80f95a85e82900e48bd 705 Pfam PF00593 TonB dependent receptor 245 703 6.6E-57 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_16920 7b1a288d9b06e80f95a85e82900e48bd 705 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 161 1.8E-21 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_16920 7b1a288d9b06e80f95a85e82900e48bd 705 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 57 704 2.5E-118 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_06335 ce147a57a5384f1f68ab5b2a00b7d394 212 Gene3D G3DSA:1.10.357.10 1 211 2.1E-70 T 11-10-2018 APT56_06335 ce147a57a5384f1f68ab5b2a00b7d394 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.4E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06335 ce147a57a5384f1f68ab5b2a00b7d394 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.4E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06335 ce147a57a5384f1f68ab5b2a00b7d394 212 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 93 173 1.7E-9 T 11-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 APT56_06335 ce147a57a5384f1f68ab5b2a00b7d394 212 SUPERFAMILY SSF48498 82 173 2.03E-8 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_06335 ce147a57a5384f1f68ab5b2a00b7d394 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 58 4.2E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06335 ce147a57a5384f1f68ab5b2a00b7d394 212 SUPERFAMILY SSF46689 1 71 1.54E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_25340 80c86b8faffb305ddaefab90542d3fcc 338 Gene3D G3DSA:3.30.420.300 5 97 1.9E-24 T 11-10-2018 APT56_25340 80c86b8faffb305ddaefab90542d3fcc 338 Pfam PF05035 2-keto-3-deoxy-galactonokinase 15 320 9.3E-100 T 11-10-2018 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130 APT56_25340 80c86b8faffb305ddaefab90542d3fcc 338 Gene3D G3DSA:3.30.420.310 98 325 1.5E-66 T 11-10-2018 APT56_07340 69ef7aebf923b27afb1bf5b2c10325b3 189 Pfam PF05233 PHB accumulation regulatory domain 126 165 1.4E-14 T 11-10-2018 IPR007897 PHB accumulation regulatory APT56_07340 69ef7aebf923b27afb1bf5b2c10325b3 189 Pfam PF05233 PHB accumulation regulatory domain 76 114 9.4E-19 T 11-10-2018 IPR007897 PHB accumulation regulatory APT56_07340 69ef7aebf923b27afb1bf5b2c10325b3 189 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 12 71 1.4E-30 T 11-10-2018 IPR012909 PHA accumulation regulator DNA-binding, N-terminal APT56_07340 69ef7aebf923b27afb1bf5b2c10325b3 189 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 11 117 6.9E-46 T 11-10-2018 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 Pfam PF00108 Thiolase, N-terminal domain 5 262 3.1E-88 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 391 3.5E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 PIRSF PIRSF000429 1 393 1.3E-113 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 Gene3D G3DSA:3.40.47.10 127 390 1.9E-141 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 1.6E-41 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 SUPERFAMILY SSF53901 271 392 5.51E-40 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 Gene3D G3DSA:3.40.47.10 7 276 1.9E-141 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 SUPERFAMILY SSF53901 5 269 3.64E-79 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_00825 65096f21c9fbfbd19f2a7573d5dfd627 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 APT56_06575 aa1d78a7530c37f0a7ee22c79ccb443f 185 Pfam PF02632 BioY family 30 177 2.9E-38 T 11-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 APT56_06575 aa1d78a7530c37f0a7ee22c79ccb443f 185 Gene3D G3DSA:1.10.1760.20 1 180 1.3E-57 T 11-10-2018 APT56_06575 aa1d78a7530c37f0a7ee22c79ccb443f 185 PIRSF PIRSF016661 1 183 2.4E-46 T 11-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 APT56_15105 f2a9b15d79620fc4594136e4baf61866 431 SUPERFAMILY SSF55031 225 336 2.36E-20 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_15105 f2a9b15d79620fc4594136e4baf61866 431 Pfam PF01546 Peptidase family M20/M25/M40 119 421 1.2E-25 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_15105 f2a9b15d79620fc4594136e4baf61866 431 Gene3D G3DSA:3.40.630.10 49 412 4.5E-112 T 11-10-2018 APT56_15105 f2a9b15d79620fc4594136e4baf61866 431 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 118 127 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APT56_15105 f2a9b15d79620fc4594136e4baf61866 431 PIRSF PIRSF037238 33 424 9.6E-106 T 11-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase APT56_15105 f2a9b15d79620fc4594136e4baf61866 431 Gene3D G3DSA:3.30.70.360 224 333 4.5E-112 T 11-10-2018 APT56_15105 f2a9b15d79620fc4594136e4baf61866 431 Pfam PF07687 Peptidase dimerisation domain 222 320 2.1E-17 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_15105 f2a9b15d79620fc4594136e4baf61866 431 SUPERFAMILY SSF53187 33 422 7.71E-51 T 11-10-2018 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1202 0.0 T 11-10-2018 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SUPERFAMILY SSF51230 1128 1202 1.16E-19 T 11-10-2018 IPR011053 Single hybrid motif APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 448 774 8.5E-99 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Gene3D G3DSA:3.30.1360.40 790 885 2.0E-30 T 11-10-2018 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 472 751 5.5E-90 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SUPERFAMILY SSF56059 83 352 6.01E-69 T 11-10-2018 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SUPERFAMILY SSF52440 2 111 6.55E-44 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 2.5E-61 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 107 3.6E-41 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SUPERFAMILY SSF160467 808 900 1.57E-17 T 11-10-2018 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SUPERFAMILY SSF50891 632 758 1.18E-32 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SMART SM00796 806 1039 1.3E-106 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SUPERFAMILY SSF51246 330 442 1.46E-37 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Gene3D G3DSA:2.40.100.10 889 1112 6.2E-96 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SUPERFAMILY SSF50891 923 1055 4.17E-26 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Gene3D G3DSA:3.30.470.130 1 443 8.2E-181 T 11-10-2018 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1159 1176 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SMART SM00878 336 440 7.6E-60 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Gene3D G3DSA:2.40.100.10 631 781 4.5E-60 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 807 1029 1.9E-45 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Pfam PF00364 Biotin-requiring enzyme 1143 1202 6.3E-14 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Gene3D G3DSA:2.40.50.100 1136 1205 8.9E-22 T 11-10-2018 APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 SMART SM00797 471 768 1.3E-171 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_23070 4c37f64bca8da2f3c49025f605093317 1211 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 6.9E-37 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 SUPERFAMILY SSF46785 13 112 8.71E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 SUPERFAMILY SSF53850 92 303 4.58E-37 T 11-10-2018 APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 Gene3D G3DSA:3.40.190.10 93 308 6.0E-89 T 11-10-2018 APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 Gene3D G3DSA:3.40.190.10 167 272 6.0E-89 T 11-10-2018 APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 Pfam PF03466 LysR substrate binding domain 90 297 1.1E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 4.3E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 Gene3D G3DSA:1.10.10.10 1 86 4.7E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06925 cbd4fb930f31f0dd950f533734b3055a 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01890 7c57e08488d745ca5e80e0903fda67c4 301 SMART SM00382 62 244 7.6E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01890 7c57e08488d745ca5e80e0903fda67c4 301 Pfam PF00005 ABC transporter 53 194 2.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_01890 7c57e08488d745ca5e80e0903fda67c4 301 SUPERFAMILY SSF52540 38 257 2.93E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01890 7c57e08488d745ca5e80e0903fda67c4 301 Gene3D G3DSA:3.40.50.300 37 287 2.1E-64 T 11-10-2018 APT56_01890 7c57e08488d745ca5e80e0903fda67c4 301 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21575 9b26ec6253230fa0a64e1ac01043a969 254 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 23 203 9.6E-36 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_21575 9b26ec6253230fa0a64e1ac01043a969 254 SMART SM01007 22 203 1.7E-38 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_21575 9b26ec6253230fa0a64e1ac01043a969 254 Gene3D G3DSA:3.40.225.10 13 251 5.1E-54 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_21575 9b26ec6253230fa0a64e1ac01043a969 254 SUPERFAMILY SSF53639 20 220 4.32E-48 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_24575 1f1320fcdc0ad415e2ba3a6493f7330a 272 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 169 8.8E-20 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_24575 1f1320fcdc0ad415e2ba3a6493f7330a 272 SUPERFAMILY SSF51735 9 241 1.0E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_24575 1f1320fcdc0ad415e2ba3a6493f7330a 272 Gene3D G3DSA:3.40.50.720 8 232 2.2E-58 T 11-10-2018 APT56_20875 5d356dfbed3d6217815901b126a68fc0 327 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_20875 5d356dfbed3d6217815901b126a68fc0 327 SUPERFAMILY SSF52540 8 255 6.12E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_20875 5d356dfbed3d6217815901b126a68fc0 327 SMART SM00382 36 235 4.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_20875 5d356dfbed3d6217815901b126a68fc0 327 Pfam PF00005 ABC transporter 28 185 8.7E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_20875 5d356dfbed3d6217815901b126a68fc0 327 Gene3D G3DSA:3.40.50.300 6 323 1.6E-99 T 11-10-2018 APT56_20875 5d356dfbed3d6217815901b126a68fc0 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 301 2.1E-20 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_20875 5d356dfbed3d6217815901b126a68fc0 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 319 1.5E-24 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_11765 32a871557c8f4ca53c4cb5f3c7daf0d4 472 Gene3D G3DSA:1.20.1720.10 25 235 9.1E-42 T 11-10-2018 APT56_11765 32a871557c8f4ca53c4cb5f3c7daf0d4 472 Gene3D G3DSA:1.20.1250.20 272 471 1.4E-16 T 11-10-2018 APT56_11765 32a871557c8f4ca53c4cb5f3c7daf0d4 472 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 29 432 3.6E-70 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 APT56_11765 32a871557c8f4ca53c4cb5f3c7daf0d4 472 SUPERFAMILY SSF103473 17 469 1.96E-61 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_11765 32a871557c8f4ca53c4cb5f3c7daf0d4 472 Pfam PF07690 Major Facilitator Superfamily 31 424 1.9E-48 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 Pfam PF00512 His Kinase A (phospho-acceptor) domain 236 301 6.9E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 3 455 1.9E-132 T 11-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 SUPERFAMILY SSF55874 290 448 8.91E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_08845 50ad57964e620629785edbdaf7f4812e 457 SUPERFAMILY SSF47384 218 301 5.3E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 452 1.1E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_08845 50ad57964e620629785edbdaf7f4812e 457 SMART SM00388 235 301 8.9E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 Gene3D G3DSA:3.30.565.10 310 456 2.7E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_08845 50ad57964e620629785edbdaf7f4812e 457 Gene3D G3DSA:1.10.287.130 185 303 3.2E-23 T 11-10-2018 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 SMART SM00304 181 234 7.0E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 411 1.3E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 1.3E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 397 1.3E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08845 50ad57964e620629785edbdaf7f4812e 457 SMART SM00387 346 457 1.6E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_13800 25a1289282da343a75c4064322b983a7 161 Pfam PF00571 CBS domain 3 56 4.6E-13 T 11-10-2018 IPR000644 CBS domain APT56_13800 25a1289282da343a75c4064322b983a7 161 Pfam PF00571 CBS domain 94 147 2.5E-15 T 11-10-2018 IPR000644 CBS domain APT56_13800 25a1289282da343a75c4064322b983a7 161 SMART SM00116 100 147 5.6E-11 T 11-10-2018 IPR000644 CBS domain APT56_13800 25a1289282da343a75c4064322b983a7 161 SMART SM00116 10 58 3.0E-7 T 11-10-2018 IPR000644 CBS domain APT56_13800 25a1289282da343a75c4064322b983a7 161 Gene3D G3DSA:3.10.580.10 1 155 1.4E-37 T 11-10-2018 APT56_13800 25a1289282da343a75c4064322b983a7 161 SUPERFAMILY SSF54631 1 148 3.28E-32 T 11-10-2018 APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 Gene3D G3DSA:3.60.20.10 2 244 5.1E-76 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 39.193 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 Gene3D G3DSA:3.40.50.10490 252 609 2.6E-139 T 11-10-2018 APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 Pfam PF01380 SIS domain 464 590 1.0E-25 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 Pfam PF01380 SIS domain 292 417 9.5E-27 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 SUPERFAMILY SSF56235 2 239 3.26E-73 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 SUPERFAMILY SSF53697 248 610 3.62E-109 T 11-10-2018 APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 Pfam PF13522 Glutamine amidotransferase domain 56 195 3.6E-22 T 11-10-2018 APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 Gene3D G3DSA:3.40.50.10490 448 595 2.6E-139 T 11-10-2018 APT56_01485 1c67fcea71762417eb8c24eb5c4efb82 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 8.0E-251 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 APT56_03200 c160f0b03019d581e6faf5d27176f867 275 SMART SM00062 35 259 6.9E-50 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_03200 c160f0b03019d581e6faf5d27176f867 275 SUPERFAMILY SSF53850 1 258 1.3E-56 T 11-10-2018 APT56_03200 c160f0b03019d581e6faf5d27176f867 275 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_03200 c160f0b03019d581e6faf5d27176f867 275 Gene3D G3DSA:3.40.190.10 24 259 3.4E-59 T 11-10-2018 APT56_03200 c160f0b03019d581e6faf5d27176f867 275 Gene3D G3DSA:3.40.190.10 123 216 3.4E-59 T 11-10-2018 APT56_03200 c160f0b03019d581e6faf5d27176f867 275 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 257 1.8E-52 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_14650 61b3f4c27f65a37bd047055cb1332c90 233 SMART SM00862 147 223 6.2E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_14650 61b3f4c27f65a37bd047055cb1332c90 233 SMART SM00448 2 112 1.8E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14650 61b3f4c27f65a37bd047055cb1332c90 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 223 6.9E-25 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_14650 61b3f4c27f65a37bd047055cb1332c90 233 SUPERFAMILY SSF46894 124 224 9.35E-29 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_14650 61b3f4c27f65a37bd047055cb1332c90 233 Gene3D G3DSA:1.10.10.10 127 232 5.2E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14650 61b3f4c27f65a37bd047055cb1332c90 233 Pfam PF00072 Response regulator receiver domain 5 113 2.8E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14650 61b3f4c27f65a37bd047055cb1332c90 233 Gene3D G3DSA:3.40.50.2300 1 126 1.7E-34 T 11-10-2018 APT56_14650 61b3f4c27f65a37bd047055cb1332c90 233 SUPERFAMILY SSF52172 2 130 1.71E-38 T 11-10-2018 IPR011006 CheY-like superfamily APT56_02340 ad22895422142961b8de85b6f0c4705b 508 Gene3D G3DSA:1.10.1040.50 191 495 2.8E-90 T 11-10-2018 APT56_02340 ad22895422142961b8de85b6f0c4705b 508 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 415 499 6.2E-20 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_02340 ad22895422142961b8de85b6f0c4705b 508 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 284 6.6E-24 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_02340 ad22895422142961b8de85b6f0c4705b 508 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 184 1.7E-62 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_02340 ad22895422142961b8de85b6f0c4705b 508 Gene3D G3DSA:3.30.750.190 293 412 2.8E-90 T 11-10-2018 APT56_02340 ad22895422142961b8de85b6f0c4705b 508 SUPERFAMILY SSF51735 1 186 8.41E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_02340 ad22895422142961b8de85b6f0c4705b 508 SUPERFAMILY SSF48179 186 292 1.53E-25 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_02340 ad22895422142961b8de85b6f0c4705b 508 Gene3D G3DSA:3.40.50.720 2 190 2.2E-67 T 11-10-2018 APT56_02340 ad22895422142961b8de85b6f0c4705b 508 SUPERFAMILY SSF51971 5 417 3.3E-5 T 11-10-2018 APT56_02340 ad22895422142961b8de85b6f0c4705b 508 SUPERFAMILY SSF48179 414 498 3.15E-19 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_02950 7c445f27717aaa2a6eb0cf0f3009ae09 499 SUPERFAMILY SSF51338 5 474 9.72E-24 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_02950 7c445f27717aaa2a6eb0cf0f3009ae09 499 Gene3D G3DSA:3.30.1490.130 292 348 8.7E-180 T 11-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 APT56_02950 7c445f27717aaa2a6eb0cf0f3009ae09 499 Gene3D G3DSA:2.30.40.10 10 465 8.7E-180 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_02950 7c445f27717aaa2a6eb0cf0f3009ae09 499 Pfam PF07969 Amidohydrolase family 54 201 6.6E-16 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_02950 7c445f27717aaa2a6eb0cf0f3009ae09 499 Pfam PF07969 Amidohydrolase family 349 467 2.7E-17 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_02950 7c445f27717aaa2a6eb0cf0f3009ae09 499 SUPERFAMILY SSF51556 64 423 1.36E-78 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_02950 7c445f27717aaa2a6eb0cf0f3009ae09 499 Gene3D G3DSA:3.20.20.140 63 418 8.7E-180 T 11-10-2018 APT56_00495 9d6a6a5488571622fce2b4f1cbc2bfd1 387 Gene3D G3DSA:3.30.9.10 88 316 6.2E-92 T 11-10-2018 APT56_00495 9d6a6a5488571622fce2b4f1cbc2bfd1 387 Gene3D G3DSA:3.50.50.60 10 359 6.2E-92 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00495 9d6a6a5488571622fce2b4f1cbc2bfd1 387 Pfam PF01266 FAD dependent oxidoreductase 10 353 6.0E-62 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_00495 9d6a6a5488571622fce2b4f1cbc2bfd1 387 SUPERFAMILY SSF51905 10 372 6.15E-54 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02985 ddf1a42775994c14a6d315d968806551 320 Pfam PF00293 NUDIX domain 9 114 5.4E-19 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_02985 ddf1a42775994c14a6d315d968806551 320 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APT56_02985 ddf1a42775994c14a6d315d968806551 320 Gene3D G3DSA:3.20.20.70 134 320 1.1E-42 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_02985 ddf1a42775994c14a6d315d968806551 320 Gene3D G3DSA:3.90.79.10 1 131 3.4E-34 T 11-10-2018 APT56_02985 ddf1a42775994c14a6d315d968806551 320 SUPERFAMILY SSF55811 6 116 1.34E-34 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_02985 ddf1a42775994c14a6d315d968806551 320 Pfam PF02581 Thiamine monophosphate synthase 148 318 2.4E-38 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_02985 ddf1a42775994c14a6d315d968806551 320 SUPERFAMILY SSF51391 118 319 1.03E-42 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_02985 ddf1a42775994c14a6d315d968806551 320 PRINTS PR00502 NUDIX hydrolase family signature 35 49 9.3E-8 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT56_02985 ddf1a42775994c14a6d315d968806551 320 PRINTS PR00502 NUDIX hydrolase family signature 49 64 9.3E-8 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT56_24375 d66d8654629048ade8e9949043f87639 391 PIRSF PIRSF001259 17 387 2.9E-112 T 11-10-2018 APT56_24375 d66d8654629048ade8e9949043f87639 391 SUPERFAMILY SSF142695 220 380 2.88E-41 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 APT56_24375 d66d8654629048ade8e9949043f87639 391 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 16 218 38.207 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_24375 d66d8654629048ade8e9949043f87639 391 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 19 214 7.5E-73 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_24375 d66d8654629048ade8e9949043f87639 391 Gene3D G3DSA:3.90.870.10 11 221 4.7E-88 T 11-10-2018 APT56_24375 d66d8654629048ade8e9949043f87639 391 SUPERFAMILY SSF55821 16 218 4.81E-85 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APT56_24375 d66d8654629048ade8e9949043f87639 391 Pfam PF00925 GTP cyclohydrolase II 225 379 2.4E-32 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 APT56_24375 d66d8654629048ade8e9949043f87639 391 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 23 213 1.1E-81 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_16125 66da7ed7bf1d5cd135df2b1fce47afd2 161 SUPERFAMILY SSF160719 30 143 3.66E-11 T 11-10-2018 APT56_16125 66da7ed7bf1d5cd135df2b1fce47afd2 161 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 5 150 2.0E-37 T 11-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein APT56_16125 66da7ed7bf1d5cd135df2b1fce47afd2 161 Pfam PF04965 Gene 25-like lysozyme 30 130 2.3E-21 T 11-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 Gene3D G3DSA:1.10.10.10 3 84 8.5E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 Gene3D G3DSA:3.40.190.10 160 253 3.3E-47 T 11-10-2018 APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 Pfam PF03466 LysR substrate binding domain 87 261 5.6E-29 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 SUPERFAMILY SSF46785 2 110 1.92E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 SUPERFAMILY SSF53850 88 274 2.04E-28 T 11-10-2018 APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10450 b9f79e716f417a324778c7eeb0cc8de5 280 Gene3D G3DSA:3.40.190.10 94 258 3.3E-47 T 11-10-2018 APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 Pfam PF00989 PAS fold 42 117 2.3E-8 T 11-10-2018 IPR013767 PAS fold GO:0006355 APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 SMART SM00091 41 110 1.5E-5 T 11-10-2018 IPR000014 PAS domain APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 40 152 6.4E-11 T 11-10-2018 IPR000014 PAS domain APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 157 319 2.4E-41 T 11-10-2018 IPR000160 GGDEF domain APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 Gene3D G3DSA:3.30.450.20 37 153 9.8E-16 T 11-10-2018 APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 Gene3D G3DSA:3.30.70.270 155 321 8.3E-51 T 11-10-2018 APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 Pfam PF00990 Diguanylate cyclase, GGDEF domain 161 316 5.2E-38 T 11-10-2018 IPR000160 GGDEF domain APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 SUPERFAMILY SSF55073 166 320 1.96E-43 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 SUPERFAMILY SSF55785 34 142 6.98E-14 T 11-10-2018 IPR035965 PAS domain superfamily APT56_14500 4dbc0eff643b143012a06e79b6eb57ec 323 SMART SM00267 150 321 5.3E-45 T 11-10-2018 IPR000160 GGDEF domain APT56_07350 aff2ffb9cb5ce1cc8461b6ff86376502 116 SUPERFAMILY SSF49503 13 113 1.22E-14 T 11-10-2018 IPR008972 Cupredoxin APT56_07350 aff2ffb9cb5ce1cc8461b6ff86376502 116 Gene3D G3DSA:2.60.40.420 18 113 3.0E-11 T 11-10-2018 IPR008972 Cupredoxin APT56_07350 aff2ffb9cb5ce1cc8461b6ff86376502 116 Pfam PF13473 Cupredoxin-like domain 11 112 8.5E-24 T 11-10-2018 IPR028096 EfeO-type cupredoxin-like domain APT56_05215 e694dc153188061c3c55a74b88d143c4 309 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 8 84 3.9E-16 T 11-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 APT56_05215 e694dc153188061c3c55a74b88d143c4 309 SUPERFAMILY SSF63848 202 307 4.58E-30 T 11-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 APT56_05215 e694dc153188061c3c55a74b88d143c4 309 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 203 305 5.1E-31 T 11-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 APT56_05215 e694dc153188061c3c55a74b88d143c4 309 Gene3D G3DSA:3.30.750.120 1 111 7.3E-21 T 11-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily APT56_05215 e694dc153188061c3c55a74b88d143c4 309 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 8 307 9.9E-55 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 APT56_05215 e694dc153188061c3c55a74b88d143c4 309 Gene3D G3DSA:2.160.20.70 197 309 1.4E-33 T 11-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 APT56_05215 e694dc153188061c3c55a74b88d143c4 309 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 7 308 25.893 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 453 470 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 SUPERFAMILY SSF50692 619 762 3.84E-40 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 Pfam PF01568 Molydopterin dinucleotide binding domain 625 738 1.0E-24 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 Pfam PF00384 Molybdopterin oxidoreductase 54 508 7.1E-69 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 Gene3D G3DSA:3.90.55.10 12 558 6.1E-190 T 11-10-2018 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 Gene3D G3DSA:3.40.228.10 145 591 6.1E-190 T 11-10-2018 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 SUPERFAMILY SSF53706 12 627 1.96E-156 T 11-10-2018 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 664 691 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 Gene3D G3DSA:3.40.50.740 36 517 6.1E-190 T 11-10-2018 APT56_23865 6f1c1f166d51beb84417aeb0e5d93936 772 Gene3D G3DSA:2.40.40.20 599 758 5.3E-46 T 11-10-2018 APT56_20755 46cceed82b553ba1ebd4611a7cf218ce 142 Pfam PF03061 Thioesterase superfamily 49 120 4.3E-15 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_20755 46cceed82b553ba1ebd4611a7cf218ce 142 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 36 116 1.3E-10 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 APT56_20755 46cceed82b553ba1ebd4611a7cf218ce 142 SUPERFAMILY SSF54637 8 134 5.48E-26 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_20755 46cceed82b553ba1ebd4611a7cf218ce 142 Gene3D G3DSA:3.10.129.10 1 135 9.0E-41 T 11-10-2018 APT56_00120 a034b388c1904819f25172bb088e4884 403 Gene3D G3DSA:3.90.1150.10 255 386 1.9E-38 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_00120 a034b388c1904819f25172bb088e4884 403 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 17 384 3.6E-122 T 11-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 APT56_00120 a034b388c1904819f25172bb088e4884 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 15 383 7.3E-97 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_00120 a034b388c1904819f25172bb088e4884 403 PIRSF PIRSF001434 1 387 9.5E-118 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_00120 a034b388c1904819f25172bb088e4884 403 SUPERFAMILY SSF53383 20 384 5.59E-92 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_00120 a034b388c1904819f25172bb088e4884 403 Gene3D G3DSA:3.40.640.10 6 254 2.0E-71 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_12695 bae1dc8f5f44db940942127029e7fe6b 310 SUPERFAMILY SSF103481 59 159 8.5E-13 T 11-10-2018 APT56_12695 bae1dc8f5f44db940942127029e7fe6b 310 Pfam PF00892 EamA-like transporter family 33 157 2.3E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_12695 bae1dc8f5f44db940942127029e7fe6b 310 Pfam PF00892 EamA-like transporter family 170 305 2.6E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_12695 bae1dc8f5f44db940942127029e7fe6b 310 SUPERFAMILY SSF103481 209 309 1.83E-12 T 11-10-2018 APT56_04135 fc48428efd418b3aa9f22f432808b960 228 Gene3D G3DSA:3.40.50.2300 1 118 7.4E-35 T 11-10-2018 APT56_04135 fc48428efd418b3aa9f22f432808b960 228 Pfam PF00072 Response regulator receiver domain 3 112 7.6E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_04135 fc48428efd418b3aa9f22f432808b960 228 SMART SM00862 145 218 5.1E-13 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_04135 fc48428efd418b3aa9f22f432808b960 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 218 1.3E-14 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_04135 fc48428efd418b3aa9f22f432808b960 228 SMART SM00448 1 112 7.4E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_04135 fc48428efd418b3aa9f22f432808b960 228 Gene3D G3DSA:1.10.10.10 119 225 4.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04135 fc48428efd418b3aa9f22f432808b960 228 SUPERFAMILY SSF52172 1 174 1.15E-36 T 11-10-2018 IPR011006 CheY-like superfamily APT56_26785 26cb288f330c0310a6400b710ef5a8b2 102 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 102 3.3E-25 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 APT56_26785 26cb288f330c0310a6400b710ef5a8b2 102 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 102 22.838 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 APT56_26785 26cb288f330c0310a6400b710ef5a8b2 102 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 97 6.7E-20 T 11-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 APT56_26785 26cb288f330c0310a6400b710ef5a8b2 102 SUPERFAMILY SSF141000 3 100 1.05E-23 T 11-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 APT56_26785 26cb288f330c0310a6400b710ef5a8b2 102 Gene3D G3DSA:1.10.20.60 1 100 2.2E-22 T 11-10-2018 APT56_26420 4ac75ed3c84e2cacb6bc3e1ae68c0f44 156 Gene3D G3DSA:3.40.1280.10 1 156 7.2E-59 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT56_26420 4ac75ed3c84e2cacb6bc3e1ae68c0f44 156 SUPERFAMILY SSF75217 1 153 2.35E-40 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APT56_26420 4ac75ed3c84e2cacb6bc3e1ae68c0f44 156 PIRSF PIRSF029256 1 156 2.1E-58 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 APT56_26420 4ac75ed3c84e2cacb6bc3e1ae68c0f44 156 Pfam PF00588 SpoU rRNA Methylase family 2 143 2.5E-31 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APT56_26420 4ac75ed3c84e2cacb6bc3e1ae68c0f44 156 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 153 30.242 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 APT56_09705 06b16b1ffa60a51ba08ac2966dddfeec 239 Gene3D G3DSA:3.40.50.2300 8 147 9.5E-26 T 11-10-2018 APT56_09705 06b16b1ffa60a51ba08ac2966dddfeec 239 Gene3D G3DSA:1.10.10.10 148 239 7.5E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_09705 06b16b1ffa60a51ba08ac2966dddfeec 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 237 3.4E-10 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_09705 06b16b1ffa60a51ba08ac2966dddfeec 239 Pfam PF00072 Response regulator receiver domain 12 119 2.0E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_09705 06b16b1ffa60a51ba08ac2966dddfeec 239 SMART SM00448 8 119 1.3E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_09705 06b16b1ffa60a51ba08ac2966dddfeec 239 SUPERFAMILY SSF46894 155 238 1.98E-12 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_09705 06b16b1ffa60a51ba08ac2966dddfeec 239 SMART SM00862 161 237 8.6E-12 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_09705 06b16b1ffa60a51ba08ac2966dddfeec 239 SUPERFAMILY SSF52172 11 134 5.27E-30 T 11-10-2018 IPR011006 CheY-like superfamily APT56_18240 52656e9627a273a3093d023caad0f908 454 Pfam PF02601 Exonuclease VII, large subunit 133 442 1.6E-88 T 11-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 APT56_18240 52656e9627a273a3093d023caad0f908 454 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 14 446 27.691 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 APT56_18240 52656e9627a273a3093d023caad0f908 454 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 18 445 4.1E-135 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 APT56_18240 52656e9627a273a3093d023caad0f908 454 Pfam PF13742 OB-fold nucleic acid binding domain 17 109 2.3E-30 T 11-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 SUPERFAMILY SSF82693 553 648 1.15E-19 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 SUPERFAMILY SSF82693 40 134 1.57E-25 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Pfam PF00873 AcrB/AcrD/AcrF family 3 1003 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 SUPERFAMILY SSF82714 182 264 2.35E-20 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Gene3D G3DSA:3.30.70.1430 555 647 0.0 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Gene3D G3DSA:3.30.2090.10 178 268 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 SUPERFAMILY SSF82866 296 490 4.97E-52 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 SUPERFAMILY SSF82866 784 1009 1.57E-47 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Gene3D G3DSA:3.30.2090.10 698 786 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Gene3D G3DSA:1.20.1640.10 501 1000 0.0 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Gene3D G3DSA:1.20.1640.10 10 500 0.0 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 1.3E-78 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Gene3D G3DSA:3.30.70.1430 40 794 0.0 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 SUPERFAMILY SSF82714 699 784 2.75E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 SUPERFAMILY SSF82693 136 323 3.92E-24 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Gene3D G3DSA:3.30.70.1440 648 843 0.0 T 11-10-2018 APT56_03905 4e5797418d55aa7320b41668b53d269d 1038 Gene3D G3DSA:3.30.70.1320 134 325 0.0 T 11-10-2018 APT56_01550 6b16d4bac286071abc7654916a7196f7 412 Gene3D G3DSA:1.20.1250.20 17 398 1.4E-39 T 11-10-2018 APT56_01550 6b16d4bac286071abc7654916a7196f7 412 Pfam PF07690 Major Facilitator Superfamily 25 327 7.3E-31 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_01550 6b16d4bac286071abc7654916a7196f7 412 SUPERFAMILY SSF103473 6 405 7.46E-50 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_18655 2e1f71cd51cf5d6201a66f99a45a0cad 139 Gene3D G3DSA:2.40.128.640 31 139 3.4E-36 T 11-10-2018 APT56_18655 2e1f71cd51cf5d6201a66f99a45a0cad 139 Pfam PF04170 NlpE N-terminal domain 44 127 2.2E-26 T 11-10-2018 IPR007298 Copper resistance lipoprotein NlpE APT56_25935 1ec345c44261e362d7e1126e904dbf79 311 Gene3D G3DSA:3.40.50.720 1 179 8.5E-64 T 11-10-2018 APT56_25935 1ec345c44261e362d7e1126e904dbf79 311 SUPERFAMILY SSF48179 182 287 1.53E-25 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_25935 1ec345c44261e362d7e1126e904dbf79 311 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 180 9.0E-60 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_25935 1ec345c44261e362d7e1126e904dbf79 311 SUPERFAMILY SSF51735 5 179 7.74E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_25935 1ec345c44261e362d7e1126e904dbf79 311 Gene3D G3DSA:1.10.1040.10 185 308 4.5E-41 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_25935 1ec345c44261e362d7e1126e904dbf79 311 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 183 281 1.3E-23 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_25935 1ec345c44261e362d7e1126e904dbf79 311 PIRSF PIRSF000105 1 306 7.9E-93 T 11-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 APT56_12655 df289ecefb655a7d5f2d39c4467dafbe 475 Gene3D G3DSA:3.30.9.10 163 390 1.4E-69 T 11-10-2018 APT56_12655 df289ecefb655a7d5f2d39c4467dafbe 475 Pfam PF01266 FAD dependent oxidoreductase 70 430 8.0E-48 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_12655 df289ecefb655a7d5f2d39c4467dafbe 475 SUPERFAMILY SSF51905 69 445 6.04E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_12655 df289ecefb655a7d5f2d39c4467dafbe 475 Gene3D G3DSA:3.50.50.60 70 429 1.4E-69 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 35.661 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 PIRSF PIRSF001456 3 353 1.1E-132 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 Gene3D G3DSA:3.60.150.10 1 353 6.1E-147 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 SUPERFAMILY SSF103263 4 351 1.1E-143 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 Pfam PF01264 Chorismate synthase 10 345 2.3E-132 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_09725 0bdac43e9c9cbe5a202554decbe78d39 355 TIGRFAM TIGR00033 aroC: chorismate synthase 10 349 2.0E-136 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 2.0E-14 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 SUPERFAMILY SSF46785 4 65 1.43E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 SMART SM01134 70 233 2.2E-53 T 11-10-2018 APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 Gene3D G3DSA:1.10.10.10 1 57 1.9E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 SUPERFAMILY SSF100950 72 232 2.02E-27 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 Pfam PF00455 DeoR C terminal sensor domain 73 231 5.1E-41 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.1E-8 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.1E-8 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT56_00105 cb72791e7d46037fc71ffab0eab16a5b 253 SMART SM00420 6 58 3.1E-12 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT56_05410 e6a2fa297145b7cd7555e9e0103a4b44 317 Gene3D G3DSA:1.10.10.60 211 312 5.2E-26 T 11-10-2018 APT56_05410 e6a2fa297145b7cd7555e9e0103a4b44 317 SUPERFAMILY SSF46689 211 261 6.36E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_05410 e6a2fa297145b7cd7555e9e0103a4b44 317 Pfam PF12833 Helix-turn-helix domain 233 311 4.3E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_05410 e6a2fa297145b7cd7555e9e0103a4b44 317 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 264 305 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_05410 e6a2fa297145b7cd7555e9e0103a4b44 317 SMART SM00342 227 309 3.5E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_05410 e6a2fa297145b7cd7555e9e0103a4b44 317 SUPERFAMILY SSF46689 263 311 1.4E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_07735 be45ed7c6b8faa1bb1a6739a98da2245 416 Gene3D G3DSA:3.30.2010.10 201 282 1.6E-30 T 11-10-2018 APT56_07735 be45ed7c6b8faa1bb1a6739a98da2245 416 Pfam PF01435 Peptidase family M48 206 413 3.8E-37 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT56_07735 be45ed7c6b8faa1bb1a6739a98da2245 416 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 24 202 3.5E-57 T 11-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 SMART SM00304 295 349 1.2E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 Gene3D G3DSA:3.30.450.20 65 167 1.3E-42 T 11-10-2018 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 SUPERFAMILY SSF103190 89 172 1.65E-9 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 409 564 2.6E-51 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 Pfam PF02743 Cache domain 94 257 4.9E-19 T 11-10-2018 IPR033479 Double Cache domain 1 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 SMART SM00283 350 597 2.1E-77 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 Gene3D G3DSA:1.10.287.950 295 599 7.5E-80 T 11-10-2018 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 SUPERFAMILY SSF58104 317 598 8.5E-69 T 11-10-2018 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 Gene3D G3DSA:3.30.450.20 54 269 1.3E-42 T 11-10-2018 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 525 554 1.7E-45 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 448 475 1.7E-45 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 477 506 1.7E-45 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_23815 cdad37fb816fd439d6028dbfcba4d79f 614 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 371 400 1.7E-45 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_18465 1b8b270e5940168805bc689ef2872e66 403 PIRSF PIRSF033271 4 403 6.2E-180 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 APT56_18465 1b8b270e5940168805bc689ef2872e66 403 Hamap MF_00677 UPF0261 protein . 5 403 49.791 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 APT56_18465 1b8b270e5940168805bc689ef2872e66 403 Gene3D G3DSA:3.40.50.12030 184 403 7.4E-87 T 11-10-2018 APT56_18465 1b8b270e5940168805bc689ef2872e66 403 Pfam PF06792 Uncharacterised protein family (UPF0261) 7 400 6.4E-158 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 APT56_18465 1b8b270e5940168805bc689ef2872e66 403 Gene3D G3DSA:3.40.50.12020 1 177 1.8E-57 T 11-10-2018 APT56_16345 cbfbb24c1aedc93b1270a2130743d2c0 347 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 334 9.5E-47 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_16345 cbfbb24c1aedc93b1270a2130743d2c0 347 Gene3D G3DSA:3.40.50.1100 20 340 2.0E-98 T 11-10-2018 APT56_16345 cbfbb24c1aedc93b1270a2130743d2c0 347 SUPERFAMILY SSF53686 11 344 7.0E-71 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_16345 cbfbb24c1aedc93b1270a2130743d2c0 347 PIRSF PIRSF006278 1 347 2.5E-91 T 11-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase APT56_16345 cbfbb24c1aedc93b1270a2130743d2c0 347 Gene3D G3DSA:3.40.50.1100 58 166 2.0E-98 T 11-10-2018 APT56_21925 ebda68e87b1f87607a26b0b47332aa5d 569 Gene3D G3DSA:1.10.3720.10 13 279 1.3E-57 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21925 ebda68e87b1f87607a26b0b47332aa5d 569 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 270 3.7E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_21925 ebda68e87b1f87607a26b0b47332aa5d 569 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 368 557 1.3E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_21925 ebda68e87b1f87607a26b0b47332aa5d 569 SUPERFAMILY SSF161098 297 555 5.7E-46 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21925 ebda68e87b1f87607a26b0b47332aa5d 569 SUPERFAMILY SSF161098 15 277 3.27E-49 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21925 ebda68e87b1f87607a26b0b47332aa5d 569 Gene3D G3DSA:1.10.3720.10 286 548 5.0E-42 T 11-10-2018 IPR035906 MetI-like superfamily APT56_17335 2dee4a3ad01cae887cdea18f59789c18 547 Pfam PF00732 GMC oxidoreductase 4 295 4.8E-86 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_17335 2dee4a3ad01cae887cdea18f59789c18 547 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 254 268 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_17335 2dee4a3ad01cae887cdea18f59789c18 547 Pfam PF05199 GMC oxidoreductase 387 525 3.7E-39 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT56_17335 2dee4a3ad01cae887cdea18f59789c18 547 Gene3D G3DSA:3.50.50.60 5 523 3.9E-174 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_17335 2dee4a3ad01cae887cdea18f59789c18 547 Gene3D G3DSA:3.30.560.10 42 468 3.9E-174 T 11-10-2018 APT56_17335 2dee4a3ad01cae887cdea18f59789c18 547 SUPERFAMILY SSF51905 3 533 3.02E-93 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_17335 2dee4a3ad01cae887cdea18f59789c18 547 SUPERFAMILY SSF54373 290 473 1.08E-57 T 11-10-2018 APT56_17335 2dee4a3ad01cae887cdea18f59789c18 547 PIRSF PIRSF000137 1 539 1.0E-149 T 11-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_22235 712c14d48ec534aeb376e795e2183cc4 518 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 169 5.8E-34 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_22235 712c14d48ec534aeb376e795e2183cc4 518 SUPERFAMILY SSF52518 342 518 1.39E-36 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_22235 712c14d48ec534aeb376e795e2183cc4 518 SUPERFAMILY SSF52518 1 172 5.4E-39 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_22235 712c14d48ec534aeb376e795e2183cc4 518 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 515 2.6E-23 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_22235 712c14d48ec534aeb376e795e2183cc4 518 Gene3D G3DSA:3.40.50.970 337 518 3.3E-39 T 11-10-2018 APT56_22235 712c14d48ec534aeb376e795e2183cc4 518 Gene3D G3DSA:3.40.50.970 1 175 6.0E-41 T 11-10-2018 APT56_13350 07ee60d582f7c241bf123d65e99ca36c 274 Gene3D G3DSA:3.40.50.300 10 268 3.3E-71 T 11-10-2018 APT56_13350 07ee60d582f7c241bf123d65e99ca36c 274 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_13350 07ee60d582f7c241bf123d65e99ca36c 274 SMART SM00382 41 229 2.8E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_13350 07ee60d582f7c241bf123d65e99ca36c 274 Pfam PF00005 ABC transporter 32 180 7.6E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13350 07ee60d582f7c241bf123d65e99ca36c 274 SUPERFAMILY SSF52540 16 242 1.02E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 Pfam PF13609 Gram-negative porin 8 348 6.5E-58 T 11-10-2018 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 Gene3D G3DSA:2.40.160.10 11 371 7.1E-86 T 11-10-2018 IPR023614 Porin domain superfamily APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 328 345 3.8E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 158 169 3.8E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 194 206 3.8E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 55 66 3.8E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 99 109 3.8E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 SUPERFAMILY SSF56935 21 371 1.41E-75 T 11-10-2018 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 PRINTS PR00184 Neisseria sp. porin signature 57 82 2.8E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 PRINTS PR00184 Neisseria sp. porin signature 325 349 2.8E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_02365 c662ae140f063680aa50c1d0ff0d7fcc 371 PRINTS PR00184 Neisseria sp. porin signature 157 174 2.8E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_05970 cf2380743f3ef20ea8df85d77ebe0dc4 314 SUPERFAMILY SSF53850 100 298 2.61E-31 T 11-10-2018 APT56_05970 cf2380743f3ef20ea8df85d77ebe0dc4 314 Gene3D G3DSA:3.40.190.10 100 291 2.2E-37 T 11-10-2018 APT56_05970 cf2380743f3ef20ea8df85d77ebe0dc4 314 Gene3D G3DSA:1.10.10.10 2 92 9.7E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05970 cf2380743f3ef20ea8df85d77ebe0dc4 314 Pfam PF03466 LysR substrate binding domain 100 298 4.2E-20 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_05970 cf2380743f3ef20ea8df85d77ebe0dc4 314 SUPERFAMILY SSF46785 8 88 1.84E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05970 cf2380743f3ef20ea8df85d77ebe0dc4 314 Gene3D G3DSA:3.40.190.10 174 272 2.2E-37 T 11-10-2018 APT56_05970 cf2380743f3ef20ea8df85d77ebe0dc4 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 66 7.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15820 0d3be722b328e827a54540f836d0cc83 236 SMART SM00382 31 214 8.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15820 0d3be722b328e827a54540f836d0cc83 236 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15820 0d3be722b328e827a54540f836d0cc83 236 Pfam PF00005 ABC transporter 22 164 2.8E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15820 0d3be722b328e827a54540f836d0cc83 236 SUPERFAMILY SSF52540 5 221 8.46E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15820 0d3be722b328e827a54540f836d0cc83 236 Gene3D G3DSA:3.40.50.300 3 224 1.5E-53 T 11-10-2018 APT56_09680 905bd36b234c72efc2e63b64b2b542ab 326 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 310 42.947 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 APT56_09680 905bd36b234c72efc2e63b64b2b542ab 326 PIRSF PIRSF006621 1 289 2.5E-62 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT56_09680 905bd36b234c72efc2e63b64b2b542ab 326 Gene3D G3DSA:3.20.20.70 1 233 5.6E-64 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_09680 905bd36b234c72efc2e63b64b2b542ab 326 Pfam PF01207 Dihydrouridine synthase (Dus) 1 289 5.2E-70 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT56_09680 905bd36b234c72efc2e63b64b2b542ab 326 Gene3D G3DSA:1.20.120.1460 236 304 3.4E-16 T 11-10-2018 APT56_09680 905bd36b234c72efc2e63b64b2b542ab 326 SUPERFAMILY SSF51395 1 289 4.07E-60 T 11-10-2018 APT56_09680 905bd36b234c72efc2e63b64b2b542ab 326 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 77 95 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT56_18265 d9af12146dc32f9277be3596efa3745c 61 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.286 T 11-10-2018 IPR038053 Uncharacterised protein family UPF0434 APT56_18265 d9af12146dc32f9277be3596efa3745c 61 SUPERFAMILY SSF158997 1 55 1.57E-19 T 11-10-2018 APT56_18265 d9af12146dc32f9277be3596efa3745c 61 Pfam PF03966 Trm112p-like protein 4 41 6.3E-10 T 11-10-2018 IPR005651 Trm112-like APT56_18265 d9af12146dc32f9277be3596efa3745c 61 Gene3D G3DSA:2.20.25.10 8 60 8.8E-24 T 11-10-2018 APT56_27400 4d825a0eac845e3b230a4deb7d0ece34 452 SUPERFAMILY SSF103473 6 443 1.57E-64 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_27400 4d825a0eac845e3b230a4deb7d0ece34 452 Gene3D G3DSA:1.20.1250.20 254 447 1.8E-26 T 11-10-2018 APT56_27400 4d825a0eac845e3b230a4deb7d0ece34 452 Gene3D G3DSA:1.20.1720.10 4 214 1.3E-45 T 11-10-2018 APT56_27400 4d825a0eac845e3b230a4deb7d0ece34 452 PRINTS PR01036 Tetracycline resistance protein TetB signature 64 86 4.6E-6 T 11-10-2018 APT56_27400 4d825a0eac845e3b230a4deb7d0ece34 452 PRINTS PR01036 Tetracycline resistance protein TetB signature 393 412 4.6E-6 T 11-10-2018 APT56_27400 4d825a0eac845e3b230a4deb7d0ece34 452 PRINTS PR01036 Tetracycline resistance protein TetB signature 126 150 4.6E-6 T 11-10-2018 APT56_27400 4d825a0eac845e3b230a4deb7d0ece34 452 Pfam PF07690 Major Facilitator Superfamily 7 402 9.6E-54 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_17600 d9d78c261985dcb9a1101204e886efd9 274 PIRSF PIRSF004848 25 268 8.1E-68 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APT56_17600 d9d78c261985dcb9a1101204e886efd9 274 Pfam PF01168 Alanine racemase, N-terminal domain 39 262 1.9E-23 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_17600 d9d78c261985dcb9a1101204e886efd9 274 SUPERFAMILY SSF51419 30 260 2.88E-73 T 11-10-2018 IPR029066 PLP-binding barrel APT56_17600 d9d78c261985dcb9a1101204e886efd9 274 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 35 262 2.4E-53 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APT56_17600 d9d78c261985dcb9a1101204e886efd9 274 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 38 261 28.502 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APT56_17600 d9d78c261985dcb9a1101204e886efd9 274 Gene3D G3DSA:3.20.20.10 19 273 9.3E-85 T 11-10-2018 IPR029066 PLP-binding barrel APT56_03155 d4608d80a7946ea466033d1d2e351874 54 PIRSF PIRSF000071 1 54 4.1E-26 T 11-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 APT56_03155 d4608d80a7946ea466033d1d2e351874 54 Pfam PF00301 Rubredoxin 4 49 6.5E-23 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 APT56_03155 d4608d80a7946ea466033d1d2e351874 54 Gene3D G3DSA:2.20.28.10 1 54 2.9E-27 T 11-10-2018 APT56_03155 d4608d80a7946ea466033d1d2e351874 54 SUPERFAMILY SSF57802 1 53 3.2E-23 T 11-10-2018 APT56_03155 d4608d80a7946ea466033d1d2e351874 54 PRINTS PR00163 Rubredoxin signature 3 19 3.4E-8 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 APT56_03155 d4608d80a7946ea466033d1d2e351874 54 PRINTS PR00163 Rubredoxin signature 33 49 3.4E-8 T 11-10-2018 IPR024935 Rubredoxin domain GO:0005506 APT56_03155 d4608d80a7946ea466033d1d2e351874 54 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 11-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 APT56_16530 cb633be5cff3dec635edc237b88a8ce0 171 Pfam PF00583 Acetyltransferase (GNAT) family 51 147 2.5E-20 T 11-10-2018 IPR000182 GNAT domain APT56_16530 cb633be5cff3dec635edc237b88a8ce0 171 Gene3D G3DSA:3.40.630.30 6 170 1.1E-43 T 11-10-2018 APT56_16530 cb633be5cff3dec635edc237b88a8ce0 171 SUPERFAMILY SSF55729 6 169 4.35E-36 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 SUPERFAMILY SSF52540 342 560 6.59E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 SUPERFAMILY SSF55781 128 201 1.45E-5 T 11-10-2018 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 Pfam PF00158 Sigma-54 interaction domain 338 492 3.7E-56 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 604 624 1.4E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 587 604 1.4E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 349 362 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 Gene3D G3DSA:3.40.50.300 320 497 4.5E-51 T 11-10-2018 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 SUPERFAMILY SSF46689 576 623 4.61E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 Gene3D G3DSA:1.10.10.60 567 619 1.2E-12 T 11-10-2018 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 Pfam PF02954 Bacterial regulatory protein, Fis family 588 617 1.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 Gene3D G3DSA:3.30.450.40 22 206 1.9E-51 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 SMART SM00382 345 489 2.5E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02015 a5dfc661dbf8c546210762231b0c6bf0 627 Pfam PF01590 GAF domain 71 202 1.2E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 Pfam PF00206 Lyase 104 296 7.3E-26 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 PRINTS PR00145 Argininosuccinate lyase family signature 196 212 1.1E-14 T 11-10-2018 APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 PRINTS PR00145 Argininosuccinate lyase family signature 104 126 1.1E-14 T 11-10-2018 APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 PRINTS PR00145 Argininosuccinate lyase family signature 145 165 1.1E-14 T 11-10-2018 APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 PRINTS PR00145 Argininosuccinate lyase family signature 282 298 1.1E-14 T 11-10-2018 APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 Gene3D G3DSA:1.20.200.10 111 463 8.0E-83 T 11-10-2018 APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 Pfam PF14698 Argininosuccinate lyase C-terminal 373 449 7.3E-12 T 11-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 Gene3D G3DSA:1.10.40.30 367 451 8.0E-83 T 11-10-2018 APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 PRINTS PR00149 Fumarate lyase superfamily signature 282 298 4.3E-7 T 11-10-2018 IPR000362 Fumarate lyase family APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 PRINTS PR00149 Fumarate lyase superfamily signature 236 263 4.3E-7 T 11-10-2018 IPR000362 Fumarate lyase family APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 PRINTS PR00149 Fumarate lyase superfamily signature 105 123 4.3E-7 T 11-10-2018 IPR000362 Fumarate lyase family APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 PRINTS PR00149 Fumarate lyase superfamily signature 150 168 4.3E-7 T 11-10-2018 IPR000362 Fumarate lyase family APT56_25135 49d8dddae42a430e6faa1e2f72807a76 512 SUPERFAMILY SSF48557 37 474 5.81E-72 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APT56_03135 521e090a31fab3e9b18f2cb0b9d2948a 246 Pfam PF01464 Transglycosylase SLT domain 119 222 5.1E-28 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 APT56_03135 521e090a31fab3e9b18f2cb0b9d2948a 246 SUPERFAMILY SSF53955 113 245 1.52E-42 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_03135 521e090a31fab3e9b18f2cb0b9d2948a 246 Gene3D G3DSA:1.10.530.10 113 246 3.6E-43 T 11-10-2018 APT56_27370 feea40d88a57cbb4d0f22c5ec3a983c4 261 PIRSF PIRSF006648 2 257 3.2E-17 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_27370 feea40d88a57cbb4d0f22c5ec3a983c4 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 142 166 3.3E-6 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_27370 feea40d88a57cbb4d0f22c5ec3a983c4 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 199 218 3.3E-6 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_27370 feea40d88a57cbb4d0f22c5ec3a983c4 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 28 49 3.3E-6 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_27370 feea40d88a57cbb4d0f22c5ec3a983c4 261 PRINTS PR00164 ABC-2 type transport system membrane protein signature 179 198 3.3E-6 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_27370 feea40d88a57cbb4d0f22c5ec3a983c4 261 Pfam PF01061 ABC-2 type transporter 8 221 2.5E-30 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT56_14020 dd79157c331a0cf7b03af1566385c41e 381 Gene3D G3DSA:3.30.9.10 87 312 5.5E-115 T 11-10-2018 APT56_14020 dd79157c331a0cf7b03af1566385c41e 381 Pfam PF01266 FAD dependent oxidoreductase 8 352 6.4E-47 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_14020 dd79157c331a0cf7b03af1566385c41e 381 Gene3D G3DSA:3.50.50.60 8 352 5.5E-115 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_14020 dd79157c331a0cf7b03af1566385c41e 381 SUPERFAMILY SSF51905 6 362 5.18E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_17655 6b51274a15d2cef59ab95b7b844b41ce 296 Gene3D G3DSA:3.40.50.1380 158 295 1.4E-42 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APT56_17655 6b51274a15d2cef59ab95b7b844b41ce 296 SUPERFAMILY SSF52335 16 141 2.24E-19 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APT56_17655 6b51274a15d2cef59ab95b7b844b41ce 296 SUPERFAMILY SSF52335 152 291 5.04E-33 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APT56_17655 6b51274a15d2cef59ab95b7b844b41ce 296 Gene3D G3DSA:3.40.50.1380 15 142 2.1E-8 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APT56_17655 6b51274a15d2cef59ab95b7b844b41ce 296 ProSitePatterns PS01335 Methylglyoxal synthase active site. 222 230 - T 11-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 APT56_08345 a662b384c57aaf547016212b7c95e1ee 625 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 283 4.0E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_08345 a662b384c57aaf547016212b7c95e1ee 625 Pfam PF02653 Branched-chain amino acid transport system / permease component 339 599 3.4E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_16980 7c59e12da2957349e2b8fe470e0153e7 281 SUPERFAMILY SSF51621 1 229 4.19E-54 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_16980 7c59e12da2957349e2b8fe470e0153e7 281 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 2 219 2.4E-35 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 APT56_16980 7c59e12da2957349e2b8fe470e0153e7 281 Gene3D G3DSA:3.20.20.60 1 281 2.1E-75 T 11-10-2018 APT56_16980 7c59e12da2957349e2b8fe470e0153e7 281 PIRSF PIRSF015582 1 281 1.8E-65 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like APT56_19215 3ea8f5984e936b1a0c302856cf90093f 184 Pfam PF07883 Cupin domain 127 181 3.4E-14 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_19215 3ea8f5984e936b1a0c302856cf90093f 184 SUPERFAMILY SSF47413 2 67 7.6E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_19215 3ea8f5984e936b1a0c302856cf90093f 184 Gene3D G3DSA:2.60.120.10 74 182 3.4E-27 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_19215 3ea8f5984e936b1a0c302856cf90093f 184 SUPERFAMILY SSF51182 75 181 4.07E-24 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_19215 3ea8f5984e936b1a0c302856cf90093f 184 Gene3D G3DSA:1.10.260.40 3 73 2.8E-18 T 11-10-2018 APT56_19215 3ea8f5984e936b1a0c302856cf90093f 184 Pfam PF01381 Helix-turn-helix 8 60 2.2E-16 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_19215 3ea8f5984e936b1a0c302856cf90093f 184 SMART SM00530 7 62 4.5E-17 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_18065 ab0e5d93f3ac51e28733885b344c383f 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 215 5.0E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_18065 ab0e5d93f3ac51e28733885b344c383f 217 SUPERFAMILY SSF161098 14 200 3.01E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18065 ab0e5d93f3ac51e28733885b344c383f 217 TIGRFAM TIGR03004 ectoine_ehuC: ectoine/hydroxyectoine ABC transporter, permease protein EhuC 10 215 1.3E-80 T 11-10-2018 IPR014342 Ectoine/hydroxyectoine ABC transporter, permease protein EhuC APT56_18065 ab0e5d93f3ac51e28733885b344c383f 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 2.2E-27 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_18065 ab0e5d93f3ac51e28733885b344c383f 217 Gene3D G3DSA:1.10.3720.10 5 216 5.0E-54 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 Gene3D G3DSA:3.40.50.300 13 311 1.9E-82 T 11-10-2018 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 Gene3D G3DSA:3.40.50.300 319 624 3.8E-86 T 11-10-2018 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 549 599 1.5E-10 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 SMART SM00382 44 249 1.3E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 SMART SM00382 357 549 4.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 SUPERFAMILY SSF52540 321 571 3.47E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 Pfam PF00005 ABC transporter 36 199 4.1E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 551 586 1.0E-8 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 251 283 1.3E-6 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 Pfam PF00005 ABC transporter 349 498 2.0E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_07020 b76157e81395ba389997aa3fe1a9e033 628 SUPERFAMILY SSF52540 16 271 9.06E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21825 9567b33296b4f5998116aa8facf04a66 512 Gene3D G3DSA:1.20.1250.20 30 462 7.6E-73 T 11-10-2018 APT56_21825 9567b33296b4f5998116aa8facf04a66 512 Pfam PF08946 Osmosensory transporter coiled coil 461 512 5.4E-17 T 11-10-2018 IPR015041 Osmosensory transporter coiled coil APT56_21825 9567b33296b4f5998116aa8facf04a66 512 ProSitePatterns PS00216 Sugar transport proteins signature 1. 321 337 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_21825 9567b33296b4f5998116aa8facf04a66 512 Pfam PF00083 Sugar (and other) transporter 33 452 5.7E-60 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_21825 9567b33296b4f5998116aa8facf04a66 512 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 39 438 1.2E-134 T 11-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 APT56_21825 9567b33296b4f5998116aa8facf04a66 512 SUPERFAMILY SSF103473 30 452 2.09E-70 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_18445 3d5d910bd8992c5bb5db8aef5b46a300 488 Gene3D G3DSA:2.30.40.10 5 430 1.8E-199 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_18445 3d5d910bd8992c5bb5db8aef5b46a300 488 Gene3D G3DSA:3.30.1490.130 285 341 1.8E-199 T 11-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 APT56_18445 3d5d910bd8992c5bb5db8aef5b46a300 488 Gene3D G3DSA:3.20.20.140 58 411 1.8E-199 T 11-10-2018 APT56_18445 3d5d910bd8992c5bb5db8aef5b46a300 488 SUPERFAMILY SSF51556 59 416 4.76E-80 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_18445 3d5d910bd8992c5bb5db8aef5b46a300 488 Pfam PF07969 Amidohydrolase family 347 461 6.3E-21 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_18445 3d5d910bd8992c5bb5db8aef5b46a300 488 Pfam PF07969 Amidohydrolase family 50 211 4.0E-12 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_18445 3d5d910bd8992c5bb5db8aef5b46a300 488 SUPERFAMILY SSF51338 5 462 4.77E-19 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 Pfam PF00005 ABC transporter 28 185 8.7E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 506 532 1.7E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 277 3.6E-8 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 ProSitePatterns PS00211 ABC transporters family signature. 427 441 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 SMART SM00382 36 235 9.8E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 SMART SM00382 313 512 2.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 Pfam PF00005 ABC transporter 305 453 7.1E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 SUPERFAMILY SSF52540 7 257 6.46E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 SUPERFAMILY SSF52540 278 526 4.96E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 Gene3D G3DSA:3.40.50.300 277 544 4.8E-86 T 11-10-2018 APT56_09905 21bc01d64ceede2f49c308db4163ec71 544 Gene3D G3DSA:3.40.50.300 6 276 2.0E-83 T 11-10-2018 APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 ProSitePatterns PS00352 'Cold-shock' domain signature. 29 48 - T 11-10-2018 IPR019844 Cold-shock conserved site APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 SMART SM00357 17 81 2.3E-32 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 PIRSF PIRSF002599 12 81 6.4E-24 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 Gene3D G3DSA:2.40.50.140 15 81 2.0E-31 T 11-10-2018 APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 PRINTS PR00050 Cold shock protein signature 39 48 3.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 PRINTS PR00050 Cold shock protein signature 54 72 3.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 PRINTS PR00050 Cold shock protein signature 18 33 3.1E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 Pfam PF00313 'Cold-shock' DNA-binding domain 17 80 3.1E-31 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_18205 df0e3e94b55d12014c0c9be2fb3a54d5 81 SUPERFAMILY SSF50249 15 79 2.36E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_20240 33fcb420d4589a56e300ac9e9284f34f 336 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 5 315 21.773 T 11-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APT56_20240 33fcb420d4589a56e300ac9e9284f34f 336 SUPERFAMILY SSF82829 249 326 7.32E-19 T 11-10-2018 APT56_20240 33fcb420d4589a56e300ac9e9284f34f 336 SUPERFAMILY SSF52402 12 235 1.33E-50 T 11-10-2018 APT56_20240 33fcb420d4589a56e300ac9e9284f34f 336 Gene3D G3DSA:3.40.50.620 9 236 4.3E-62 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_20240 33fcb420d4589a56e300ac9e9284f34f 336 Pfam PF01171 PP-loop family 19 202 2.6E-46 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 APT56_20240 33fcb420d4589a56e300ac9e9284f34f 336 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 19 205 9.9E-43 T 11-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APT56_20240 33fcb420d4589a56e300ac9e9284f34f 336 Pfam PF09179 TilS substrate binding domain 254 323 1.7E-14 T 11-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APT56_20240 33fcb420d4589a56e300ac9e9284f34f 336 Gene3D G3DSA:1.20.59.20 238 325 2.9E-9 T 11-10-2018 APT56_10485 eb205098874abeb9a3b83fc25fb80eb1 239 Pfam PF00149 Calcineurin-like phosphoesterase 18 190 1.9E-10 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_10485 eb205098874abeb9a3b83fc25fb80eb1 239 Gene3D G3DSA:3.60.21.10 4 221 1.2E-45 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_10485 eb205098874abeb9a3b83fc25fb80eb1 239 SUPERFAMILY SSF56300 14 218 2.73E-36 T 11-10-2018 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 Pfam PF00679 Elongation factor G C-terminus 397 478 4.2E-22 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 SUPERFAMILY SSF50447 151 299 7.57E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 Gene3D G3DSA:2.40.30.10 199 300 3.2E-27 T 11-10-2018 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 Gene3D G3DSA:3.30.70.870 307 591 4.7E-133 T 11-10-2018 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 Gene3D G3DSA:3.40.50.300 2 197 1.4E-63 T 11-10-2018 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 134 1.6E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 Pfam PF00009 Elongation factor Tu GTP binding domain 5 195 4.9E-54 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 Pfam PF03144 Elongation factor Tu domain 2 219 290 1.3E-9 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 SUPERFAMILY SSF54980 399 514 5.28E-28 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 SUPERFAMILY SSF52540 4 207 1.93E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 Gene3D G3DSA:2.40.50.250 484 600 4.7E-133 T 11-10-2018 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 600 1.7E-285 T 11-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 Gene3D G3DSA:3.30.70.240 390 483 4.7E-133 T 11-10-2018 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 SUPERFAMILY SSF54980 303 388 2.66E-13 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 8.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 8.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 8.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 8.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07925 58083ae34004ed9e5dee6d08bc63abd5 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 8.2E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_25345 e17715f4328093184cbb0af7eb791cee 217 SUPERFAMILY SSF51569 4 207 2.01E-58 T 11-10-2018 APT56_25345 e17715f4328093184cbb0af7eb791cee 217 Gene3D G3DSA:3.20.20.70 8 215 7.4E-66 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_25345 e17715f4328093184cbb0af7eb791cee 217 Pfam PF01081 KDPG and KHG aldolase 10 187 1.4E-30 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Gene3D G3DSA:2.150.10.10 2501 2644 8.0E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2517 2535 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2490 2508 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 SUPERFAMILY SSF51120 2460 2615 1.26E-32 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Gene3D G3DSA:3.40.50.410 2136 2341 5.0E-34 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 2562 2653 2.5E-20 T 11-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2508 2526 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 SUPERFAMILY SSF53300 2138 2325 6.08E-25 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Gene3D G3DSA:2.150.10.10 2459 2500 1.1E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 PRINTS PR00313 NodO calcium binding signature 2494 2502 2.5E-10 T 11-10-2018 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 PRINTS PR00313 NodO calcium binding signature 2512 2520 2.5E-10 T 11-10-2018 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 PRINTS PR00313 NodO calcium binding signature 2381 2392 2.5E-10 T 11-10-2018 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 PRINTS PR00313 NodO calcium binding signature 2539 2548 2.5E-10 T 11-10-2018 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 2499 2517 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Pfam PF13519 von Willebrand factor type A domain 2152 2270 3.9E-14 T 11-10-2018 IPR002035 von Willebrand factor, type A APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 848 945 8.9E-32 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 524 629 8.2E-27 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1381 1478 4.4E-33 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1270 1375 6.6E-26 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1594 1691 4.4E-33 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1057 1162 3.6E-26 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1910 2001 1.6E-27 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1696 1798 1.2E-27 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 737 842 1.5E-26 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 311 416 1.0E-25 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 98 203 1.0E-25 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1 93 5.0E-30 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 210 306 2.1E-32 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 636 732 4.9E-32 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 423 519 4.9E-32 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 950 1052 2.0E-27 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1483 1588 5.0E-26 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1168 1265 1.3E-33 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1803 1906 3.1E-28 T 11-10-2018 IPR010221 VCBS repeat APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2475 2492 0.02 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2511 2528 0.0053 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2529 2546 0.011 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2493 2510 0.0017 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2460 2474 0.53 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 2378 2391 0.15 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APT56_09745 c0a28b7c0e8432af1dd83518ad3c9661 2658 SMART SM00327 2148 2346 2.1E-18 T 11-10-2018 IPR002035 von Willebrand factor, type A APT56_13445 99235656e5f1e159e6086c6058e3f06c 151 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 28 149 3.7E-18 T 11-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 APT56_13445 99235656e5f1e159e6086c6058e3f06c 151 TIGRFAM TIGR02695 azurin: azurin 25 149 1.1E-43 T 11-10-2018 IPR014068 Azurin APT56_13445 99235656e5f1e159e6086c6058e3f06c 151 SUPERFAMILY SSF49503 25 150 6.1E-33 T 11-10-2018 IPR008972 Cupredoxin APT56_13445 99235656e5f1e159e6086c6058e3f06c 151 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 127 143 - T 11-10-2018 IPR028871 Blue (type 1) copper protein, binding site APT56_13445 99235656e5f1e159e6086c6058e3f06c 151 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 29 147 3.0E-30 T 11-10-2018 APT56_13445 99235656e5f1e159e6086c6058e3f06c 151 Gene3D G3DSA:2.60.40.420 23 150 4.2E-34 T 11-10-2018 IPR008972 Cupredoxin APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 214 232 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 48 70 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 523 547 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 364 386 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 476 497 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 450 469 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 122 142 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 1.5E-39 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 SUPERFAMILY SSF64518 133 556 2.62E-34 T 11-10-2018 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 3 364 2.7E-77 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 APT56_12025 c6a6ed03d69d2cd93620b212da818aef 558 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 512 556 1.0E-6 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain APT56_11555 583f7abaaaf62ae4d61ebdcd10e4dcbd 323 Pfam PF16220 Domain of unknown function (DUF4880) 11 50 2.4E-14 T 11-10-2018 IPR032623 FecR, N-terminal APT56_11555 583f7abaaaf62ae4d61ebdcd10e4dcbd 323 PIRSF PIRSF018266 1 316 2.4E-81 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_11555 583f7abaaaf62ae4d61ebdcd10e4dcbd 323 Gene3D G3DSA:2.60.120.1440 101 229 3.0E-21 T 11-10-2018 APT56_11555 583f7abaaaf62ae4d61ebdcd10e4dcbd 323 Pfam PF04773 FecR protein 113 199 4.9E-18 T 11-10-2018 IPR006860 FecR protein APT56_16765 5dd03cbd7de4739b5260ff06966531cc 142 Gene3D G3DSA:3.40.630.30 3 129 2.8E-20 T 11-10-2018 APT56_16765 5dd03cbd7de4739b5260ff06966531cc 142 SUPERFAMILY SSF55729 8 128 1.86E-22 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_16765 5dd03cbd7de4739b5260ff06966531cc 142 Pfam PF00583 Acetyltransferase (GNAT) family 28 122 1.4E-16 T 11-10-2018 IPR000182 GNAT domain APT56_23485 6ebdc642cdf608fe74bc4bf6c7c863ed 268 SUPERFAMILY SSF46689 168 214 3.05E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23485 6ebdc642cdf608fe74bc4bf6c7c863ed 268 SUPERFAMILY SSF46689 217 264 1.52E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23485 6ebdc642cdf608fe74bc4bf6c7c863ed 268 SMART SM00342 181 263 1.7E-17 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23485 6ebdc642cdf608fe74bc4bf6c7c863ed 268 Pfam PF02311 AraC-like ligand binding domain 20 144 1.1E-19 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_23485 6ebdc642cdf608fe74bc4bf6c7c863ed 268 SUPERFAMILY SSF51215 24 144 1.96E-17 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_23485 6ebdc642cdf608fe74bc4bf6c7c863ed 268 Pfam PF12833 Helix-turn-helix domain 188 264 4.5E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23485 6ebdc642cdf608fe74bc4bf6c7c863ed 268 Gene3D G3DSA:1.10.10.60 166 268 2.9E-22 T 11-10-2018 APT56_10975 a96151bb08e09d099ff1342f828ae6f7 525 PIRSF PIRSF002741 4 514 7.4E-90 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_10975 a96151bb08e09d099ff1342f828ae6f7 525 Gene3D G3DSA:3.40.190.10 194 509 2.0E-108 T 11-10-2018 APT56_10975 a96151bb08e09d099ff1342f828ae6f7 525 Gene3D G3DSA:3.10.105.10 287 497 2.0E-108 T 11-10-2018 APT56_10975 a96151bb08e09d099ff1342f828ae6f7 525 Gene3D G3DSA:3.90.76.10 44 193 2.0E-108 T 11-10-2018 APT56_10975 a96151bb08e09d099ff1342f828ae6f7 525 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 433 4.1E-80 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_10975 a96151bb08e09d099ff1342f828ae6f7 525 SUPERFAMILY SSF53850 21 516 1.63E-112 T 11-10-2018 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 SUPERFAMILY SSF46626 66 162 1.08E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 83 156 5.6E-16 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 229 301 1.2E-15 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 PRINTS PR00607 Class IE cytochrome C signature 146 157 4.0E-12 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 PRINTS PR00607 Class IE cytochrome C signature 103 113 4.0E-12 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 PRINTS PR00607 Class IE cytochrome C signature 92 103 4.0E-12 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 PRINTS PR00607 Class IE cytochrome C signature 131 143 4.0E-12 T 11-10-2018 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 Gene3D G3DSA:1.10.760.10 219 306 4.2E-31 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 Gene3D G3DSA:1.10.760.10 81 159 1.6E-29 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_02345 0b715071fba4f5b5dc779e7910ca22ac 306 SUPERFAMILY SSF46626 229 303 1.72E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21890 7f4539ef4e6d2e94435fbd4ef55caf09 210 SUPERFAMILY SSF53335 27 209 1.42E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_21890 7f4539ef4e6d2e94435fbd4ef55caf09 210 Gene3D G3DSA:3.40.50.150 24 210 6.1E-54 T 11-10-2018 APT56_21890 7f4539ef4e6d2e94435fbd4ef55caf09 210 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 12 210 30.171 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 APT56_21890 7f4539ef4e6d2e94435fbd4ef55caf09 210 Pfam PF01728 FtsJ-like methyltransferase 28 208 6.1E-53 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 APT56_21890 7f4539ef4e6d2e94435fbd4ef55caf09 210 PIRSF PIRSF005461 1 210 1.9E-68 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 APT56_17855 d99ab4ba051a63ffc23312293c3d7a17 193 Gene3D G3DSA:3.20.20.400 4 191 1.3E-45 T 11-10-2018 IPR035928 GlpP-like superfamily APT56_17855 d99ab4ba051a63ffc23312293c3d7a17 193 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 14 185 1.0E-46 T 11-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 APT56_17855 d99ab4ba051a63ffc23312293c3d7a17 193 SUPERFAMILY SSF110391 13 186 1.44E-46 T 11-10-2018 IPR035928 GlpP-like superfamily APT56_17855 d99ab4ba051a63ffc23312293c3d7a17 193 PIRSF PIRSF016897 3 191 4.6E-53 T 11-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 APT56_11610 bd9934011ed3ffb242f88c39cf3db660 287 SUPERFAMILY SSF53335 11 276 5.48E-63 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_11610 bd9934011ed3ffb242f88c39cf3db660 287 Pfam PF04072 Leucine carboxyl methyltransferase 14 190 9.8E-47 T 11-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 APT56_11610 bd9934011ed3ffb242f88c39cf3db660 287 Gene3D G3DSA:3.40.50.150 5 280 4.0E-49 T 11-10-2018 APT56_11610 bd9934011ed3ffb242f88c39cf3db660 287 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 12 267 2.2E-47 T 11-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 APT56_11585 44e430a85ed8da1ec62d63bf996cbd34 679 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 376 674 4.3E-48 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 APT56_11585 44e430a85ed8da1ec62d63bf996cbd34 679 Gene3D G3DSA:3.30.470.20 546 675 1.2E-22 T 11-10-2018 APT56_11585 44e430a85ed8da1ec62d63bf996cbd34 679 SUPERFAMILY SSF52009 236 322 6.41E-5 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 APT56_11585 44e430a85ed8da1ec62d63bf996cbd34 679 Gene3D G3DSA:3.30.1490.20 359 544 9.5E-39 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_11585 44e430a85ed8da1ec62d63bf996cbd34 679 SUPERFAMILY SSF56059 363 674 4.71E-49 T 11-10-2018 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 Pfam PF01039 Carboxyl transferase domain 101 242 2.4E-15 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 283 38.127 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 285 2.0E-124 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 Gene3D G3DSA:3.90.226.10 27 288 3.8E-84 T 11-10-2018 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 1.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 1.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 1.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 1.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 1.6E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_06715 faf5f502318f55094db3edcb0a7592ee 292 SUPERFAMILY SSF52096 27 285 4.62E-85 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_10600 4165c47e0182e27b9ec3d3598824edd8 147 Gene3D G3DSA:3.10.129.10 8 146 1.8E-27 T 11-10-2018 APT56_10600 4165c47e0182e27b9ec3d3598824edd8 147 SUPERFAMILY SSF54637 11 138 4.85E-31 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_10600 4165c47e0182e27b9ec3d3598824edd8 147 Pfam PF13279 Thioesterase-like superfamily 17 123 2.4E-9 T 11-10-2018 APT56_25095 27df41ff843e6ee154beae429f39ded5 323 Pfam PF05426 Alginate lyase 28 260 2.2E-42 T 11-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 APT56_25095 27df41ff843e6ee154beae429f39ded5 323 SUPERFAMILY SSF48230 16 315 1.19E-37 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 APT56_25095 27df41ff843e6ee154beae429f39ded5 323 Gene3D G3DSA:1.50.10.100 2 315 1.2E-82 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 APT56_00730 7ea00aea517d9603a8849a5ddcd64960 318 SUPERFAMILY SSF46689 215 262 8.96E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_00730 7ea00aea517d9603a8849a5ddcd64960 318 Gene3D G3DSA:1.10.10.60 213 317 1.3E-25 T 11-10-2018 APT56_00730 7ea00aea517d9603a8849a5ddcd64960 318 Pfam PF01965 DJ-1/PfpI family 8 174 4.8E-16 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_00730 7ea00aea517d9603a8849a5ddcd64960 318 Gene3D G3DSA:3.40.50.880 2 202 1.0E-54 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_00730 7ea00aea517d9603a8849a5ddcd64960 318 SMART SM00342 228 311 1.8E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_00730 7ea00aea517d9603a8849a5ddcd64960 318 SUPERFAMILY SSF52317 6 193 2.75E-43 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_00730 7ea00aea517d9603a8849a5ddcd64960 318 Pfam PF12833 Helix-turn-helix domain 234 312 1.4E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_00730 7ea00aea517d9603a8849a5ddcd64960 318 SUPERFAMILY SSF46689 265 315 6.72E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_08375 1ab3beaf459e4d672627081edec2692e 153 Gene3D G3DSA:3.40.1230.10 1 149 5.6E-43 T 11-10-2018 IPR036748 MTH938-like superfamily APT56_08375 1ab3beaf459e4d672627081edec2692e 153 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 15 145 4.2E-32 T 11-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein APT56_08375 1ab3beaf459e4d672627081edec2692e 153 SUPERFAMILY SSF64076 13 147 1.14E-30 T 11-10-2018 IPR036748 MTH938-like superfamily APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 Hamap MF_01465 Protein translocase subunit SecY [secY]. 8 428 29.859 T 11-10-2018 IPR026593 Protein translocase subunit SecY APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 18 424 1.4E-136 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 ProSitePatterns PS00755 Protein secY signature 1. 74 93 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 Gene3D G3DSA:1.10.3370.10 9 424 8.8E-168 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PIRSF PIRSF004557 9 435 2.3E-127 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 SUPERFAMILY SSF103491 13 419 3.27E-135 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 Pfam PF00344 SecY translocase 74 412 5.2E-119 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 1.0E-96 T 11-10-2018 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 21 39 1.0E-96 T 11-10-2018 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 1.0E-96 T 11-10-2018 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 114 137 1.0E-96 T 11-10-2018 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 1.0E-96 T 11-10-2018 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 1.0E-96 T 11-10-2018 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 1.0E-96 T 11-10-2018 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 1.0E-96 T 11-10-2018 APT56_27690 7d81b6d2d0ff346918888f2094018d6f 441 PRINTS PR00303 Preprotein translocase SecY subunit signature 73 93 1.0E-96 T 11-10-2018 APT56_10500 f9bfd208d3a8c37bc5ac965884cf12da 415 Gene3D G3DSA:1.20.1250.20 28 211 5.1E-21 T 11-10-2018 APT56_10500 f9bfd208d3a8c37bc5ac965884cf12da 415 SUPERFAMILY SSF103473 8 413 1.57E-56 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_10500 f9bfd208d3a8c37bc5ac965884cf12da 415 Gene3D G3DSA:1.20.1250.20 233 414 2.7E-20 T 11-10-2018 APT56_10500 f9bfd208d3a8c37bc5ac965884cf12da 415 Pfam PF07690 Major Facilitator Superfamily 38 234 1.3E-23 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_10500 f9bfd208d3a8c37bc5ac965884cf12da 415 Pfam PF07690 Major Facilitator Superfamily 242 413 5.5E-14 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 SMART SM00345 24 83 6.0E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 SUPERFAMILY SSF64288 71 247 3.93E-37 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 1.9E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 1.9E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 Gene3D G3DSA:3.40.1410.10 91 249 3.5E-35 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 Pfam PF07702 UTRA domain 106 240 2.9E-32 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 2.9E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 SMART SM00866 105 242 5.6E-30 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 SUPERFAMILY SSF46785 13 95 9.11E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20085 e68e7876afe4f859684568404ee3cc9f 302 Gene3D G3DSA:1.10.10.10 14 90 1.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16485 196444df72187317253b01707fd32cc2 539 SMART SM00283 270 538 2.2E-50 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_16485 196444df72187317253b01707fd32cc2 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 8 33 2.1E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_16485 196444df72187317253b01707fd32cc2 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 433 2.1E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_16485 196444df72187317253b01707fd32cc2 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 375 402 2.1E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_16485 196444df72187317253b01707fd32cc2 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 298 327 2.1E-19 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_16485 196444df72187317253b01707fd32cc2 539 SUPERFAMILY SSF58104 230 539 7.85E-62 T 11-10-2018 APT56_16485 196444df72187317253b01707fd32cc2 539 Gene3D G3DSA:1.10.287.950 209 539 5.2E-63 T 11-10-2018 APT56_16485 196444df72187317253b01707fd32cc2 539 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 177 3.8E-22 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain APT56_16485 196444df72187317253b01707fd32cc2 539 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 342 504 1.9E-34 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_16485 196444df72187317253b01707fd32cc2 539 SMART SM00304 210 262 6.3E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_05365 4deac0eee213785e3b31f50aad8d450e 366 SUPERFAMILY SSF53474 96 342 1.27E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_05365 4deac0eee213785e3b31f50aad8d450e 366 Gene3D G3DSA:3.40.50.1820 82 351 1.2E-22 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_05365 4deac0eee213785e3b31f50aad8d450e 366 PIRSF PIRSF005211 3 366 9.9E-118 T 11-10-2018 IPR012020 AB hydrolase 4 family APT56_05365 4deac0eee213785e3b31f50aad8d450e 366 Pfam PF00561 alpha/beta hydrolase fold 103 345 6.7E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 Pfam PF13426 PAS domain 20 122 3.8E-14 T 11-10-2018 IPR000014 PAS domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 SMART SM00267 271 442 4.6E-68 T 11-10-2018 IPR000160 GGDEF domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 280 440 2.7E-43 T 11-10-2018 IPR000160 GGDEF domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 SMART SM00052 452 694 4.1E-103 T 11-10-2018 IPR001633 EAL domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 Gene3D G3DSA:3.30.450.20 142 278 1.7E-11 T 11-10-2018 APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 Gene3D G3DSA:3.30.70.270 279 455 3.6E-63 T 11-10-2018 APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 Gene3D G3DSA:3.20.20.450 456 695 2.1E-91 T 11-10-2018 IPR035919 EAL domain superfamily APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 SUPERFAMILY SSF141868 459 692 1.31E-83 T 11-10-2018 IPR035919 EAL domain superfamily APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 Pfam PF00990 Diguanylate cyclase, GGDEF domain 282 437 5.1E-52 T 11-10-2018 IPR000160 GGDEF domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 SUPERFAMILY SSF55785 20 130 4.51E-23 T 11-10-2018 IPR035965 PAS domain superfamily APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 Pfam PF08448 PAS fold 156 271 3.7E-6 T 11-10-2018 IPR013656 PAS fold-4 APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 SUPERFAMILY SSF55073 287 444 8.77E-51 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 5 129 2.7E-16 T 11-10-2018 IPR000014 PAS domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 SMART SM00091 7 76 0.62 T 11-10-2018 IPR000014 PAS domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 SMART SM00091 149 216 3.6E-5 T 11-10-2018 IPR000014 PAS domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 Gene3D G3DSA:3.30.450.20 5 141 2.3E-27 T 11-10-2018 APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 Pfam PF00563 EAL domain 459 689 2.8E-69 T 11-10-2018 IPR001633 EAL domain APT56_01565 96e762ebee6e8d82ef0e4b0169dc5a26 698 SUPERFAMILY SSF55785 141 269 2.09E-9 T 11-10-2018 IPR035965 PAS domain superfamily APT56_12350 da5c898b8eb4c35d1d8fa716a8747603 304 Pfam PF16220 Domain of unknown function (DUF4880) 12 53 1.3E-13 T 11-10-2018 IPR032623 FecR, N-terminal APT56_12350 da5c898b8eb4c35d1d8fa716a8747603 304 Gene3D G3DSA:2.60.120.1440 87 222 4.9E-19 T 11-10-2018 APT56_12350 da5c898b8eb4c35d1d8fa716a8747603 304 PIRSF PIRSF018266 1 304 9.0E-79 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_12350 da5c898b8eb4c35d1d8fa716a8747603 304 Pfam PF04773 FecR protein 97 188 3.5E-18 T 11-10-2018 IPR006860 FecR protein APT56_22390 607245e5f518813402bdd0616ae3a813 238 SMART SM00382 39 231 6.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22390 607245e5f518813402bdd0616ae3a813 238 SUPERFAMILY SSF52540 6 230 9.66E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22390 607245e5f518813402bdd0616ae3a813 238 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_22390 607245e5f518813402bdd0616ae3a813 238 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 7 228 5.5E-97 T 11-10-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_22390 607245e5f518813402bdd0616ae3a813 238 Gene3D G3DSA:3.40.50.300 6 236 5.0E-49 T 11-10-2018 APT56_22390 607245e5f518813402bdd0616ae3a813 238 Pfam PF00005 ABC transporter 30 184 1.9E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_06635 6b1ef159c8ba5aae6c388c026f7cc2b6 236 SMART SM00382 30 215 1.1E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_06635 6b1ef159c8ba5aae6c388c026f7cc2b6 236 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_06635 6b1ef159c8ba5aae6c388c026f7cc2b6 236 Pfam PF00005 ABC transporter 21 163 5.1E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_06635 6b1ef159c8ba5aae6c388c026f7cc2b6 236 Gene3D G3DSA:3.40.50.300 2 236 6.9E-51 T 11-10-2018 APT56_06635 6b1ef159c8ba5aae6c388c026f7cc2b6 236 SUPERFAMILY SSF52540 4 229 2.92E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_10795 cde60b99795e5973196bc47449aad4e6 210 Pfam PF01810 LysE type translocator 17 207 1.3E-30 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_10795 cde60b99795e5973196bc47449aad4e6 210 PIRSF PIRSF006324 1 209 7.1E-46 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_09200 9d9316d60bae56c8af1079849b5d040d 134 SUPERFAMILY SSF81301 1 109 5.4E-35 T 11-10-2018 APT56_09200 9d9316d60bae56c8af1079849b5d040d 134 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 1.2E-32 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS APT56_09200 9d9316d60bae56c8af1079849b5d040d 134 Pfam PF02410 Ribosomal silencing factor during starvation 9 104 1.3E-24 T 11-10-2018 APT56_09200 9d9316d60bae56c8af1079849b5d040d 134 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 23.607 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS APT56_09200 9d9316d60bae56c8af1079849b5d040d 134 Gene3D G3DSA:3.30.460.10 1 114 1.2E-32 T 11-10-2018 APT56_03450 b54451f2a3148ab188a4217cd5177e4d 401 Gene3D G3DSA:3.40.190.170 276 375 1.5E-34 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_03450 b54451f2a3148ab188a4217cd5177e4d 401 Gene3D G3DSA:3.40.190.10 248 361 1.5E-34 T 11-10-2018 APT56_03450 b54451f2a3148ab188a4217cd5177e4d 401 Gene3D G3DSA:3.40.190.170 35 153 9.0E-50 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_03450 b54451f2a3148ab188a4217cd5177e4d 401 Gene3D G3DSA:3.40.190.10 154 200 9.0E-50 T 11-10-2018 APT56_03450 b54451f2a3148ab188a4217cd5177e4d 401 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 45 200 1.2E-18 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_03450 b54451f2a3148ab188a4217cd5177e4d 401 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 261 360 2.0E-11 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_08825 5f7febd835006e3631e970c375285c5d 499 Gene3D G3DSA:1.20.1600.10 60 469 6.4E-132 T 11-10-2018 APT56_08825 5f7febd835006e3631e970c375285c5d 499 SUPERFAMILY SSF56954 6 470 1.57E-109 T 11-10-2018 APT56_08825 5f7febd835006e3631e970c375285c5d 499 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 468 1.3E-131 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_08825 5f7febd835006e3631e970c375285c5d 499 Gene3D G3DSA:2.20.200.10 107 357 6.4E-132 T 11-10-2018 APT56_08825 5f7febd835006e3631e970c375285c5d 499 Pfam PF02321 Outer membrane efflux protein 76 255 2.0E-26 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_08825 5f7febd835006e3631e970c375285c5d 499 Pfam PF02321 Outer membrane efflux protein 286 464 6.4E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_26695 dc259e3962a17e6e588690eced4cded1 318 Pfam PF03330 Lytic transglycolase 88 174 4.8E-23 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain APT56_26695 dc259e3962a17e6e588690eced4cded1 318 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 23 179 23.233 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 APT56_26695 dc259e3962a17e6e588690eced4cded1 318 Gene3D G3DSA:2.40.40.10 87 179 3.6E-32 T 11-10-2018 IPR036908 RlpA-like domain superfamily APT56_26695 dc259e3962a17e6e588690eced4cded1 318 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 89 181 2.9E-38 T 11-10-2018 IPR012997 Rare lipoprotein A APT56_26695 dc259e3962a17e6e588690eced4cded1 318 Pfam PF05036 Sporulation related domain 241 307 8.0E-15 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 APT56_26695 dc259e3962a17e6e588690eced4cded1 318 SUPERFAMILY SSF110997 242 307 2.09E-11 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APT56_26695 dc259e3962a17e6e588690eced4cded1 318 Gene3D G3DSA:3.30.70.1070 242 315 9.6E-9 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APT56_26695 dc259e3962a17e6e588690eced4cded1 318 SUPERFAMILY SSF50685 91 170 3.38E-6 T 11-10-2018 IPR036908 RlpA-like domain superfamily APT56_27775 be514ac56cea347a789c516f5795fe44 256 Pfam PF00005 ABC transporter 18 177 2.7E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27775 be514ac56cea347a789c516f5795fe44 256 SUPERFAMILY SSF52540 2 247 2.01E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27775 be514ac56cea347a789c516f5795fe44 256 Gene3D G3DSA:3.40.50.300 1 251 1.9E-57 T 11-10-2018 APT56_27775 be514ac56cea347a789c516f5795fe44 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 227 248 4.5E-5 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_27775 be514ac56cea347a789c516f5795fe44 256 SMART SM00382 26 226 1.6E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23065 02180504944323142374d689320d8270 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 9.4E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_23065 02180504944323142374d689320d8270 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 9.4E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_23065 02180504944323142374d689320d8270 239 SUPERFAMILY SSF46785 19 87 9.91E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23065 02180504944323142374d689320d8270 239 SMART SM00895 93 219 2.2E-11 T 11-10-2018 IPR011711 GntR, C-terminal APT56_23065 02180504944323142374d689320d8270 239 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 54 73 9.1E-5 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_23065 02180504944323142374d689320d8270 239 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 43 54 9.1E-5 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_23065 02180504944323142374d689320d8270 239 SUPERFAMILY SSF48008 89 226 3.4E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_23065 02180504944323142374d689320d8270 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 83 3.0E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_23065 02180504944323142374d689320d8270 239 Pfam PF07729 FCD domain 94 218 2.6E-14 T 11-10-2018 IPR011711 GntR, C-terminal APT56_23065 02180504944323142374d689320d8270 239 Gene3D G3DSA:1.10.10.10 18 84 1.8E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23065 02180504944323142374d689320d8270 239 Gene3D G3DSA:1.20.120.530 89 228 7.3E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_23065 02180504944323142374d689320d8270 239 SMART SM00345 25 83 3.2E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20330 93ba253f8ba4d162af98b82dae063bf5 439 Gene3D G3DSA:1.20.1250.20 22 439 2.6E-65 T 11-10-2018 APT56_20330 93ba253f8ba4d162af98b82dae063bf5 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_20330 93ba253f8ba4d162af98b82dae063bf5 439 SUPERFAMILY SSF103473 22 437 2.09E-61 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_20330 93ba253f8ba4d162af98b82dae063bf5 439 Pfam PF07690 Major Facilitator Superfamily 62 395 1.0E-28 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_13925 3047b2ceb195d5542bb06949d7e8ba75 339 Gene3D G3DSA:3.40.800.20 1 338 2.2E-129 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_13925 3047b2ceb195d5542bb06949d7e8ba75 339 Pfam PF00850 Histone deacetylase domain 30 334 6.7E-71 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_13925 3047b2ceb195d5542bb06949d7e8ba75 339 SUPERFAMILY SSF52768 3 338 1.82E-90 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily APT56_13925 3047b2ceb195d5542bb06949d7e8ba75 339 PRINTS PR01270 Histone deacetylase superfamily signature 153 176 3.3E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_13925 3047b2ceb195d5542bb06949d7e8ba75 339 PRINTS PR01270 Histone deacetylase superfamily signature 185 200 3.3E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_13925 3047b2ceb195d5542bb06949d7e8ba75 339 PRINTS PR01270 Histone deacetylase superfamily signature 271 281 3.3E-16 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_02380 193b170c2e7af02201547efa834707ee 374 Gene3D G3DSA:2.60.120.10 20 374 6.8E-129 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_02380 193b170c2e7af02201547efa834707ee 374 SUPERFAMILY SSF51182 22 371 4.82E-115 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_02380 193b170c2e7af02201547efa834707ee 374 Pfam PF07883 Cupin domain 107 174 4.4E-16 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_02380 193b170c2e7af02201547efa834707ee 374 Pfam PF07883 Cupin domain 279 346 1.8E-10 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 Gene3D G3DSA:1.10.287.130 346 433 2.1E-20 T 11-10-2018 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 596 9.1E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 SMART SM00388 370 438 8.7E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 SUPERFAMILY SSF55874 430 595 2.1E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 SMART SM00387 480 598 8.4E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 SUPERFAMILY SSF103190 61 169 2.16E-15 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 Gene3D G3DSA:3.30.450.20 161 277 9.7E-32 T 11-10-2018 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 547 3.8E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 533 3.8E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 566 3.8E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 Pfam PF00512 His Kinase A (phospho-acceptor) domain 371 435 4.8E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 SUPERFAMILY SSF47384 355 434 1.0E-10 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 Gene3D G3DSA:3.30.565.10 440 599 1.6E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 Gene3D G3DSA:3.30.450.20 37 158 3.4E-33 T 11-10-2018 APT56_09180 3c11ba7e1ce7926582f9d6d864296757 606 PIRSF PIRSF036431 1 604 2.6E-181 T 11-10-2018 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1091 1348 1.7E-98 T 11-10-2018 APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 SUPERFAMILY SSF82697 5 160 2.77E-43 T 11-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Gene3D G3DSA:3.90.650.10 836 1032 1.3E-29 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Gene3D G3DSA:1.10.8.750 164 223 1.9E-25 T 11-10-2018 APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 SUPERFAMILY SSF55326 231 437 3.0E-56 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 SUPERFAMILY SSF55326 648 843 3.4E-64 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 SUPERFAMILY SSF56042 443 683 1.21E-47 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Gene3D G3DSA:3.40.50.880 1033 1349 4.0E-122 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Pfam PF02769 AIR synthase related protein, C-terminal domain 854 1017 7.3E-14 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Pfam PF02769 AIR synthase related protein, C-terminal domain 447 604 6.4E-27 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 SMART SM01211 1091 1348 7.1E-137 T 11-10-2018 APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 SUPERFAMILY SSF109736 165 230 6.8E-21 T 11-10-2018 APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 SUPERFAMILY SSF52317 1088 1348 2.5E-86 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Gene3D G3DSA:3.30.1330.10 224 432 4.9E-39 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 9 1348 0.0 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 SUPERFAMILY SSF56042 852 1085 4.34E-49 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 4 1349 20.483 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Gene3D G3DSA:3.90.650.10 433 614 2.3E-57 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_17285 5e816aaad5b22233bcbcbbf5c483157d 1349 Gene3D G3DSA:3.30.1330.10 650 835 1.6E-21 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_06535 336857c8c1994a9ba8b4db56c14cb6c6 354 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 276 322 4.8E-7 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 APT56_06535 336857c8c1994a9ba8b4db56c14cb6c6 354 SUPERFAMILY SSF64383 225 335 1.57E-11 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 APT56_06535 336857c8c1994a9ba8b4db56c14cb6c6 354 SMART SM00771 210 332 2.6E-27 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 APT56_06535 336857c8c1994a9ba8b4db56c14cb6c6 354 Gene3D G3DSA:3.30.1400.10 243 334 4.1E-5 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 Gene3D G3DSA:1.10.3860.10 9 429 5.0E-125 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 Pfam PF00375 Sodium:dicarboxylate symporter family 19 411 2.3E-108 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 SUPERFAMILY SSF118215 19 412 1.19E-118 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 12 438 38.425 T 11-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 46 61 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site APT56_09185 ea160d0d77cf067114c2d635986556b9 444 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 305 328 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site APT56_09185 ea160d0d77cf067114c2d635986556b9 444 PRINTS PR00173 Glutamate-aspartate symporter signature 302 328 6.4E-27 T 11-10-2018 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 PRINTS PR00173 Glutamate-aspartate symporter signature 84 109 6.4E-27 T 11-10-2018 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 6.4E-27 T 11-10-2018 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 PRINTS PR00173 Glutamate-aspartate symporter signature 337 356 6.4E-27 T 11-10-2018 APT56_09185 ea160d0d77cf067114c2d635986556b9 444 PRINTS PR00173 Glutamate-aspartate symporter signature 17 37 6.4E-27 T 11-10-2018 APT56_18170 5f0f54f72991023fd7b0f291be6c012b 230 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 42 202 1.3E-40 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component APT56_18170 5f0f54f72991023fd7b0f291be6c012b 230 Gene3D G3DSA:3.40.50.10610 31 210 5.1E-10 T 11-10-2018 APT56_18170 5f0f54f72991023fd7b0f291be6c012b 230 SUPERFAMILY SSF159594 39 210 1.36E-33 T 11-10-2018 APT56_04675 6a4059698d2fcc9107ca810e9092c516 131 SUPERFAMILY SSF54593 1 128 2.28E-38 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_04675 6a4059698d2fcc9107ca810e9092c516 131 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 127 2.4E-67 T 11-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APT56_04675 6a4059698d2fcc9107ca810e9092c516 131 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APT56_04675 6a4059698d2fcc9107ca810e9092c516 131 Gene3D G3DSA:3.10.180.10 1 130 1.2E-50 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_04675 6a4059698d2fcc9107ca810e9092c516 131 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APT56_04675 6a4059698d2fcc9107ca810e9092c516 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 5.9E-25 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 SMART SM00475 2 259 4.2E-115 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 SUPERFAMILY SSF56672 504 905 9.78E-150 T 11-10-2018 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Gene3D G3DSA:1.10.150.20 686 829 2.9E-106 T 11-10-2018 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Pfam PF00476 DNA polymerase family A 529 902 9.6E-152 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Gene3D G3DSA:1.20.1060.10 521 636 2.7E-43 T 11-10-2018 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 SUPERFAMILY SSF88723 1 166 3.08E-56 T 11-10-2018 IPR029060 PIN-like domain superfamily APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 TIGRFAM TIGR00593 pola: DNA polymerase I 5 905 1.6E-270 T 11-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 SUPERFAMILY SSF53098 309 495 3.97E-50 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 ProSitePatterns PS00447 DNA polymerase family A signature. 731 750 - T 11-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 166 2.9E-54 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 SMART SM00482 664 869 6.0E-106 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 707 720 1.1E-66 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 731 756 1.1E-66 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 677 700 1.1E-66 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 768 779 1.1E-66 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 790 801 1.1E-66 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 633 655 1.1E-66 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 822 838 1.1E-66 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 PRINTS PR00868 DNA-polymerase family A (pol I) signature 852 865 1.1E-66 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Gene3D G3DSA:1.10.150.20 170 242 2.0E-88 T 11-10-2018 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 167 250 5.3E-22 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 SUPERFAMILY SSF47807 167 283 2.09E-29 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 SMART SM00279 169 204 5.9E-12 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Gene3D G3DSA:3.30.420.10 308 520 8.3E-60 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Gene3D G3DSA:3.40.50.1010 5 276 2.0E-88 T 11-10-2018 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Gene3D G3DSA:3.30.70.370 644 901 2.9E-106 T 11-10-2018 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 Pfam PF01612 3'-5' exonuclease 310 495 1.5E-36 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APT56_07960 2c6c1d76ce840ae86d5e3b31ed9af271 905 SMART SM00474 310 496 5.7E-27 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APT56_19670 0b31d79d6fe753466ba26cf650d325da 331 SUPERFAMILY SSF50129 13 144 6.7E-36 T 11-10-2018 IPR011032 GroES-like superfamily APT56_19670 0b31d79d6fe753466ba26cf650d325da 331 Gene3D G3DSA:3.40.50.720 124 266 7.0E-109 T 11-10-2018 APT56_19670 0b31d79d6fe753466ba26cf650d325da 331 SMART SM00829 14 327 1.4E-74 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_19670 0b31d79d6fe753466ba26cf650d325da 331 Pfam PF00107 Zinc-binding dehydrogenase 155 279 3.3E-30 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_19670 0b31d79d6fe753466ba26cf650d325da 331 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 8 329 1.4E-138 T 11-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 APT56_19670 0b31d79d6fe753466ba26cf650d325da 331 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 107 3.4E-9 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_19670 0b31d79d6fe753466ba26cf650d325da 331 SUPERFAMILY SSF51735 115 291 6.48E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19670 0b31d79d6fe753466ba26cf650d325da 331 Gene3D G3DSA:3.90.180.10 19 327 7.0E-109 T 11-10-2018 APT56_22250 c01abafda55e5158f7a483339a5aad6f 263 SMART SM00062 35 259 3.6E-49 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_22250 c01abafda55e5158f7a483339a5aad6f 263 SMART SM00079 35 258 0.0088 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 APT56_22250 c01abafda55e5158f7a483339a5aad6f 263 SUPERFAMILY SSF53850 7 258 1.71E-58 T 11-10-2018 APT56_22250 c01abafda55e5158f7a483339a5aad6f 263 Gene3D G3DSA:3.40.190.10 34 255 1.5E-54 T 11-10-2018 APT56_22250 c01abafda55e5158f7a483339a5aad6f 263 Gene3D G3DSA:3.40.190.10 120 221 1.5E-54 T 11-10-2018 APT56_22250 c01abafda55e5158f7a483339a5aad6f 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 256 3.4E-53 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_03255 0d4759b299080df0bf1d254681e6438a 365 Gene3D G3DSA:3.40.190.10 145 360 4.1E-117 T 11-10-2018 APT56_03255 0d4759b299080df0bf1d254681e6438a 365 SUPERFAMILY SSF53850 47 344 1.09E-56 T 11-10-2018 APT56_03255 0d4759b299080df0bf1d254681e6438a 365 Gene3D G3DSA:3.40.190.10 48 347 4.1E-117 T 11-10-2018 APT56_03255 0d4759b299080df0bf1d254681e6438a 365 Pfam PF13416 Bacterial extracellular solute-binding protein 62 323 2.5E-21 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_20255 b39709f59242a7fdec6030764d68f05e 484 Gene3D G3DSA:3.40.50.620 1 322 3.4E-118 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_20255 b39709f59242a7fdec6030764d68f05e 484 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 225 246 6.1E-28 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 6.1E-28 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 194 212 6.1E-28 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 6.1E-28 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 SUPERFAMILY SSF47323 333 482 3.27E-31 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 330 1.0E-109 T 11-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 483 6.5E-146 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 Pfam PF09190 DALR domain 359 413 1.4E-15 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 SMART SM00840 359 414 7.7E-23 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 Gene3D G3DSA:1.20.120.640 323 484 2.6E-37 T 11-10-2018 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 SUPERFAMILY SSF52374 2 331 7.04E-84 T 11-10-2018 APT56_20255 b39709f59242a7fdec6030764d68f05e 484 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 483 36.751 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 Gene3D G3DSA:1.10.287.130 43 123 1.3E-12 T 11-10-2018 APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 SUPERFAMILY SSF47384 41 122 3.92E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 SMART SM00388 56 123 2.0E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 Pfam PF00512 His Kinase A (phospho-acceptor) domain 59 122 5.1E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 PRINTS PR00344 Bacterial sensor protein C-terminal signature 198 212 3.0E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 PRINTS PR00344 Bacterial sensor protein C-terminal signature 229 247 3.0E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 PRINTS PR00344 Bacterial sensor protein C-terminal signature 253 266 3.0E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 Gene3D G3DSA:3.30.565.10 132 272 2.5E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 SMART SM00387 161 269 1.3E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 SUPERFAMILY SSF55874 133 269 1.83E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20570 d55d113dcbc5e6706263dc36746a7aa2 292 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 169 268 1.4E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_24710 cc639538228e3e97143a1881edcb1edb 472 Gene3D G3DSA:3.90.1150.10 126 458 3.2E-79 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_24710 cc639538228e3e97143a1881edcb1edb 472 Gene3D G3DSA:1.10.10.10 15 99 2.9E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24710 cc639538228e3e97143a1881edcb1edb 472 SUPERFAMILY SSF53383 116 460 1.31E-74 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_24710 cc639538228e3e97143a1881edcb1edb 472 Gene3D G3DSA:3.40.640.10 150 366 3.2E-79 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_24710 cc639538228e3e97143a1881edcb1edb 472 Pfam PF00155 Aminotransferase class I and II 147 455 1.3E-32 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_24710 cc639538228e3e97143a1881edcb1edb 472 SUPERFAMILY SSF46785 13 83 7.81E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_24710 cc639538228e3e97143a1881edcb1edb 472 SMART SM00345 20 79 2.4E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_24710 cc639538228e3e97143a1881edcb1edb 472 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 79 1.1E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_06490 03968eeea4ed1573671ee179340abc47 692 Gene3D G3DSA:3.40.250.10 559 690 6.1E-10 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_06490 03968eeea4ed1573671ee179340abc47 692 Pfam PF14247 Putative metallopeptidase 437 490 2.6E-11 T 11-10-2018 IPR025644 Putative metallopeptidase APT56_06490 03968eeea4ed1573671ee179340abc47 692 Pfam PF14247 Putative metallopeptidase 249 391 2.1E-27 T 11-10-2018 IPR025644 Putative metallopeptidase APT56_06490 03968eeea4ed1573671ee179340abc47 692 SUPERFAMILY SSF52821 568 685 8.77E-12 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 SUPERFAMILY SSF52540 6 245 5.32E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 Pfam PF08402 TOBE domain 281 359 2.0E-9 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 SUPERFAMILY SSF50331 239 359 8.16E-13 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 Gene3D G3DSA:2.40.50.940 224 358 4.5E-12 T 11-10-2018 APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 SMART SM00382 30 213 1.6E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 Gene3D G3DSA:3.40.50.300 5 223 2.9E-70 T 11-10-2018 APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 Gene3D G3DSA:2.40.50.140 287 351 4.5E-12 T 11-10-2018 APT56_21930 b24fd56b768bf8e32a21e0c9da826f8f 361 Pfam PF00005 ABC transporter 21 163 1.5E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00675 ca1a7d1403d2d3d2a1c68c063b6e0893 245 Pfam PF00005 ABC transporter 19 167 8.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00675 ca1a7d1403d2d3d2a1c68c063b6e0893 245 SUPERFAMILY SSF52540 3 237 3.08E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00675 ca1a7d1403d2d3d2a1c68c063b6e0893 245 PIRSF PIRSF039085 1 242 1.7E-104 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_00675 ca1a7d1403d2d3d2a1c68c063b6e0893 245 Gene3D G3DSA:3.40.50.300 1 242 7.8E-76 T 11-10-2018 APT56_00675 ca1a7d1403d2d3d2a1c68c063b6e0893 245 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00675 ca1a7d1403d2d3d2a1c68c063b6e0893 245 SMART SM00382 28 215 1.1E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 Pfam PF00005 ABC transporter 303 453 3.7E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 Gene3D G3DSA:3.40.50.300 277 544 1.6E-86 T 11-10-2018 APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 Gene3D G3DSA:3.40.50.300 1 276 3.7E-87 T 11-10-2018 APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 Pfam PF00005 ABC transporter 25 182 1.5E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 SMART SM00382 312 511 2.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 SMART SM00382 33 232 8.6E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 SUPERFAMILY SSF52540 292 525 6.66E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 SUPERFAMILY SSF52540 4 254 1.41E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 505 531 4.1E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_19235 a9916fa8a555d2e5239c8bfa02413248 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 290 3.0E-7 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_26260 33d31a072cddae266fa9c84981ab8218 128 Pfam PF13411 MerR HTH family regulatory protein 10 72 4.0E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_26260 33d31a072cddae266fa9c84981ab8218 128 SMART SM00422 10 78 1.8E-12 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_26260 33d31a072cddae266fa9c84981ab8218 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 45 65 7.3E-6 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_26260 33d31a072cddae266fa9c84981ab8218 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 11 22 7.3E-6 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_26260 33d31a072cddae266fa9c84981ab8218 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 22 35 7.3E-6 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_26260 33d31a072cddae266fa9c84981ab8218 128 Gene3D G3DSA:1.10.1660.10 3 127 2.3E-27 T 11-10-2018 APT56_26260 33d31a072cddae266fa9c84981ab8218 128 SUPERFAMILY SSF46955 10 120 4.03E-24 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 SUPERFAMILY SSF56024 272 470 1.1E-46 T 11-10-2018 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 Gene3D G3DSA:3.30.870.10 304 484 8.7E-26 T 11-10-2018 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 Pfam PF13091 PLD-like domain 137 280 2.0E-16 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 Pfam PF13091 PLD-like domain 328 450 1.6E-24 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 SMART SM00155 220 247 8.3 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 SMART SM00155 398 425 7.4E-6 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 PIRSF PIRSF000850 317 373 0.16 T 11-10-2018 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 PIRSF PIRSF000850 119 191 0.11 T 11-10-2018 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 PIRSF PIRSF000850 370 460 3.0E-5 T 11-10-2018 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 Gene3D G3DSA:3.30.870.10 115 302 1.7E-40 T 11-10-2018 APT56_20750 e97b933e3c4844352ad6ec4ce2e7c09f 485 SUPERFAMILY SSF56024 112 316 4.19E-49 T 11-10-2018 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 SUPERFAMILY SSF51735 194 428 3.83E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 48 176 2.9E-55 T 11-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 SUPERFAMILY SSF53223 17 196 5.12E-68 T 11-10-2018 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 227 247 4.6E-33 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 185 207 4.6E-33 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 354 365 4.6E-33 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 105 119 4.6E-33 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 194 426 2.2E-75 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 Gene3D G3DSA:1.10.8.1210 1 56 2.2E-24 T 11-10-2018 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 PIRSF PIRSF000185 19 429 4.4E-161 T 11-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 113 126 - T 11-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 Gene3D G3DSA:3.40.50.720 194 429 2.6E-86 T 11-10-2018 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 Gene3D G3DSA:3.40.50.10860 57 192 5.2E-58 T 11-10-2018 APT56_12485 16a87da6952f02e9b466470f5cd92d9e 429 SMART SM00839 196 426 8.9E-97 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 SUPERFAMILY SSF51735 6 260 3.41E-71 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.2E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.2E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.2E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 3.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 3.4E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 Gene3D G3DSA:3.40.50.720 1 263 2.9E-78 T 11-10-2018 APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 259 8.6E-45 T 11-10-2018 APT56_20405 3443428e8d63e3f5e8def833cd8ce9d9 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_02700 b173e30584d7134375ea34b6053d9169 242 SUPERFAMILY SSF48008 104 236 5.75E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_02700 b173e30584d7134375ea34b6053d9169 242 SMART SM00895 106 232 1.9E-22 T 11-10-2018 IPR011711 GntR, C-terminal APT56_02700 b173e30584d7134375ea34b6053d9169 242 Pfam PF07729 FCD domain 106 232 2.8E-23 T 11-10-2018 IPR011711 GntR, C-terminal APT56_02700 b173e30584d7134375ea34b6053d9169 242 Gene3D G3DSA:1.10.10.10 21 93 4.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02700 b173e30584d7134375ea34b6053d9169 242 SUPERFAMILY SSF46785 21 88 5.9E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02700 b173e30584d7134375ea34b6053d9169 242 SMART SM00345 25 84 3.1E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02700 b173e30584d7134375ea34b6053d9169 242 Gene3D G3DSA:1.20.120.530 101 237 1.3E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_02700 b173e30584d7134375ea34b6053d9169 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 1.4E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02700 b173e30584d7134375ea34b6053d9169 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 1.2E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02700 b173e30584d7134375ea34b6053d9169 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 1.2E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_04120 49b652dfa60012e25dc54a7e69223773 140 Pfam PF03061 Thioesterase superfamily 23 107 4.0E-20 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_04120 49b652dfa60012e25dc54a7e69223773 140 PIRSF PIRSF003230 2 140 6.8E-48 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 APT56_04120 49b652dfa60012e25dc54a7e69223773 140 Gene3D G3DSA:3.10.129.10 6 139 2.9E-45 T 11-10-2018 APT56_04120 49b652dfa60012e25dc54a7e69223773 140 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 10 133 1.2E-51 T 11-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 APT56_04120 49b652dfa60012e25dc54a7e69223773 140 SUPERFAMILY SSF54637 9 137 3.16E-44 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_04120 49b652dfa60012e25dc54a7e69223773 140 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 13 128 2.0E-34 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Pfam PF12447 Protein of unknown function (DUF3683) 21 144 5.7E-50 T 11-10-2018 IPR022153 Protein of unknown function DUF3683 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Pfam PF02913 FAD linked oxidases, C-terminal domain 718 815 1.8E-17 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Pfam PF02913 FAD linked oxidases, C-terminal domain 459 576 6.1E-4 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 SUPERFAMILY SSF46548 824 946 3.14E-13 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 916 927 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 SUPERFAMILY SSF55103 458 619 8.5E-16 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Pfam PF11880 Domain of unknown function (DUF3400) 1275 1319 1.9E-24 T 11-10-2018 IPR021817 Protein of unknown function DUF3400 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 SUPERFAMILY SSF56176 156 425 1.36E-53 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Gene3D G3DSA:3.30.70.2740 711 779 1.5E-6 T 11-10-2018 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Pfam PF13183 4Fe-4S dicluster domain 852 930 8.4E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Gene3D G3DSA:3.30.465.40 154 352 1.1E-34 T 11-10-2018 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 SUPERFAMILY SSF55103 715 818 6.38E-27 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Pfam PF01565 FAD binding domain 194 339 2.2E-26 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Pfam PF02754 Cysteine-rich domain 1061 1150 4.9E-7 T 11-10-2018 IPR004017 Cysteine-rich domain APT56_26565 ee8100a16d491369c5f499f773956d3d 1319 Pfam PF02754 Cysteine-rich domain 1186 1272 0.0043 T 11-10-2018 IPR004017 Cysteine-rich domain APT56_09915 96b12bb5ede339ac550259b6a58acc2f 335 SUPERFAMILY SSF161098 95 313 6.93E-20 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09915 96b12bb5ede339ac550259b6a58acc2f 335 Gene3D G3DSA:1.10.3720.10 89 322 2.1E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09915 96b12bb5ede339ac550259b6a58acc2f 335 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 326 4.4E-45 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_03625 41128ec01fcbed9717d01f23097034e9 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 4.7E-12 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03625 41128ec01fcbed9717d01f23097034e9 301 SUPERFAMILY SSF46785 5 114 1.36E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03625 41128ec01fcbed9717d01f23097034e9 301 SUPERFAMILY SSF53850 94 298 2.39E-39 T 11-10-2018 APT56_03625 41128ec01fcbed9717d01f23097034e9 301 Gene3D G3DSA:1.10.10.10 5 95 2.7E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03625 41128ec01fcbed9717d01f23097034e9 301 Pfam PF03466 LysR substrate binding domain 92 294 6.5E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_03625 41128ec01fcbed9717d01f23097034e9 301 Gene3D G3DSA:3.40.190.290 96 299 2.4E-35 T 11-10-2018 APT56_26045 77ee74c72c5aa1672998dc0d3f2a7435 568 SUPERFAMILY SSF56425 342 508 5.49E-35 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_26045 77ee74c72c5aa1672998dc0d3f2a7435 568 Pfam PF00890 FAD binding domain 11 549 3.6E-94 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_26045 77ee74c72c5aa1672998dc0d3f2a7435 568 SUPERFAMILY SSF51905 4 565 2.76E-40 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_07125 2d07bd45d2f6057b89c262ac9b28e00f 607 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 527 533 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT56_07125 2d07bd45d2f6057b89c262ac9b28e00f 607 SMART SM00981 283 381 1.4E-13 T 11-10-2018 IPR004114 THUMP domain GO:0003723 APT56_07125 2d07bd45d2f6057b89c262ac9b28e00f 607 SUPERFAMILY SSF53335 375 595 1.13E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_07125 2d07bd45d2f6057b89c262ac9b28e00f 607 Pfam PF02926 THUMP domain 254 380 3.9E-9 T 11-10-2018 IPR004114 THUMP domain GO:0003723 APT56_07125 2d07bd45d2f6057b89c262ac9b28e00f 607 Gene3D G3DSA:3.30.2130.30 232 478 3.7E-131 T 11-10-2018 APT56_07125 2d07bd45d2f6057b89c262ac9b28e00f 607 Pfam PF01170 Putative RNA methylase family UPF0020 389 593 2.7E-47 T 11-10-2018 IPR000241 Putative RNA methylase domain APT56_07125 2d07bd45d2f6057b89c262ac9b28e00f 607 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 422 433 - T 11-10-2018 IPR000241 Putative RNA methylase domain APT56_07125 2d07bd45d2f6057b89c262ac9b28e00f 607 Gene3D G3DSA:3.40.50.150 396 592 3.7E-131 T 11-10-2018 APT56_11410 76a9be3823d6c84340ce4ef9eb017e23 460 Pfam PF01425 Amidase 40 248 2.0E-83 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_11410 76a9be3823d6c84340ce4ef9eb017e23 460 Pfam PF01425 Amidase 352 450 2.0E-16 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_11410 76a9be3823d6c84340ce4ef9eb017e23 460 SUPERFAMILY SSF75304 21 456 4.97E-122 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_11410 76a9be3823d6c84340ce4ef9eb017e23 460 Gene3D G3DSA:3.90.1300.10 22 458 4.7E-135 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_23320 3b82a5bb08038f608d09c06bb2240f6b 303 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 16 237 2.4E-116 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 APT56_23320 3b82a5bb08038f608d09c06bb2240f6b 303 SUPERFAMILY SSF81464 28 116 2.62E-23 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23320 3b82a5bb08038f608d09c06bb2240f6b 303 SUPERFAMILY SSF49503 121 278 4.78E-51 T 11-10-2018 IPR008972 Cupredoxin APT56_23320 3b82a5bb08038f608d09c06bb2240f6b 303 Pfam PF06481 COX Aromatic Rich Motif 237 281 4.1E-13 T 11-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 APT56_23320 3b82a5bb08038f608d09c06bb2240f6b 303 Gene3D G3DSA:2.60.40.420 112 279 5.7E-55 T 11-10-2018 IPR008972 Cupredoxin APT56_23320 3b82a5bb08038f608d09c06bb2240f6b 303 Gene3D G3DSA:1.10.287.90 27 111 1.1E-33 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23320 3b82a5bb08038f608d09c06bb2240f6b 303 PIRSF PIRSF000292 2 299 1.9E-132 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 APT56_23320 3b82a5bb08038f608d09c06bb2240f6b 303 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 148 218 3.2E-5 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_14875 6052cd171af7ab8358f684ab2322a48e 524 PIRSF PIRSF006060 3 498 1.4E-82 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_14875 6052cd171af7ab8358f684ab2322a48e 524 Pfam PF00324 Amino acid permease 28 477 7.2E-135 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 APT56_14875 6052cd171af7ab8358f684ab2322a48e 524 ProSitePatterns PS00218 Amino acid permeases signature. 53 84 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 APT56_14875 6052cd171af7ab8358f684ab2322a48e 524 Gene3D G3DSA:1.20.1740.10 19 486 3.3E-62 T 11-10-2018 APT56_22020 ff87190d029e84427b05df0d5860a83f 108 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 104 6.0E-33 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT56_22020 ff87190d029e84427b05df0d5860a83f 108 Pfam PF02575 YbaB/EbfC DNA-binding family 10 98 1.0E-35 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT56_22020 ff87190d029e84427b05df0d5860a83f 108 SUPERFAMILY SSF82607 10 102 2.22E-35 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily APT56_22020 ff87190d029e84427b05df0d5860a83f 108 Gene3D G3DSA:3.30.1310.10 1 108 2.9E-45 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily APT56_22020 ff87190d029e84427b05df0d5860a83f 108 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 4 97 22.819 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT56_22020 ff87190d029e84427b05df0d5860a83f 108 PIRSF PIRSF004555 2 108 8.9E-39 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family APT56_11795 68e4bc97eeb2ffd8d30ada7fafca81d6 496 Gene3D G3DSA:1.20.1600.10 58 472 3.7E-146 T 11-10-2018 APT56_11795 68e4bc97eeb2ffd8d30ada7fafca81d6 496 SUPERFAMILY SSF56954 2 475 1.44E-118 T 11-10-2018 APT56_11795 68e4bc97eeb2ffd8d30ada7fafca81d6 496 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 472 8.4E-135 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_11795 68e4bc97eeb2ffd8d30ada7fafca81d6 496 Pfam PF02321 Outer membrane efflux protein 288 470 2.3E-30 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_11795 68e4bc97eeb2ffd8d30ada7fafca81d6 496 Pfam PF02321 Outer membrane efflux protein 67 257 3.6E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_11795 68e4bc97eeb2ffd8d30ada7fafca81d6 496 Gene3D G3DSA:2.20.200.10 104 361 3.7E-146 T 11-10-2018 APT56_13185 e75f227273ee204a643ab2daf4f890e2 401 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 390 1.3E-98 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_13185 e75f227273ee204a643ab2daf4f890e2 401 Gene3D G3DSA:3.90.1150.10 262 393 6.9E-39 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_13185 e75f227273ee204a643ab2daf4f890e2 401 SUPERFAMILY SSF53383 29 392 6.12E-88 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_13185 e75f227273ee204a643ab2daf4f890e2 401 Gene3D G3DSA:3.40.640.10 4 261 3.1E-67 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_13185 e75f227273ee204a643ab2daf4f890e2 401 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 10 392 2.8E-115 T 11-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 APT56_13185 e75f227273ee204a643ab2daf4f890e2 401 PIRSF PIRSF001434 1 394 4.2E-122 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 Pfam PF11784 Protein of unknown function (DUF3320) 1829 1876 3.1E-14 T 11-10-2018 IPR021754 Protein of unknown function DUF3320 APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 Gene3D G3DSA:3.40.960.10 1659 1763 8.0E-17 T 11-10-2018 APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 Pfam PF13087 AAA domain 1434 1612 4.2E-13 T 11-10-2018 APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 SUPERFAMILY SSF52980 1657 1768 2.31E-15 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 Gene3D G3DSA:3.40.50.300 1245 1418 1.5E-14 T 11-10-2018 APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 SUPERFAMILY SSF52540 690 1641 6.21E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 Pfam PF13195 Protein of unknown function (DUF4011) 412 585 5.5E-41 T 11-10-2018 IPR025103 Protein of unknown function DUF4011 APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 Pfam PF13086 AAA domain 1355 1397 2.8E-6 T 11-10-2018 APT56_06065 dd12d03570909bc67777e1e263d9fef9 1995 Gene3D G3DSA:3.40.50.300 1442 1626 4.9E-27 T 11-10-2018 APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 SUPERFAMILY SSF46785 3 111 2.66E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 Gene3D G3DSA:3.40.190.10 162 255 4.3E-52 T 11-10-2018 APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 4.8E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 Pfam PF03466 LysR substrate binding domain 88 281 6.3E-26 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 Gene3D G3DSA:3.40.190.10 96 260 4.3E-52 T 11-10-2018 APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 Gene3D G3DSA:1.10.10.10 3 91 2.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00130 a600e8bb46c5863e9d418d287ff95ac0 293 SUPERFAMILY SSF53850 89 282 5.84E-28 T 11-10-2018 APT56_25320 c673b7be10167850503ef384413c5695 1001 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 113 1001 1.1E-102 T 11-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 APT56_25320 c673b7be10167850503ef384413c5695 1001 Gene3D G3DSA:3.55.50.30 10 116 6.8E-16 T 11-10-2018 APT56_25320 c673b7be10167850503ef384413c5695 1001 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 984 1001 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_25320 c673b7be10167850503ef384413c5695 1001 SUPERFAMILY SSF56935 105 1001 1.19E-82 T 11-10-2018 APT56_25320 c673b7be10167850503ef384413c5695 1001 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 106 1001 8.0E-142 T 11-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 APT56_25320 c673b7be10167850503ef384413c5695 1001 Pfam PF00593 TonB dependent receptor 651 1000 3.1E-33 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_25320 c673b7be10167850503ef384413c5695 1001 Pfam PF00593 TonB dependent receptor 343 574 3.9E-4 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_25320 c673b7be10167850503ef384413c5695 1001 Pfam PF07715 TonB-dependent Receptor Plug Domain 121 227 1.4E-13 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_25320 c673b7be10167850503ef384413c5695 1001 Gene3D G3DSA:2.170.130.10 117 243 2.1E-43 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_07810 8feb397c1610281f91beb642302fac43 88 PRINTS PR01249 Ribosomal protein L31 signature 44 59 5.2E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_07810 8feb397c1610281f91beb642302fac43 88 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.2E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_07810 8feb397c1610281f91beb642302fac43 88 PRINTS PR01249 Ribosomal protein L31 signature 59 77 5.2E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_07810 8feb397c1610281f91beb642302fac43 88 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 23.402 T 11-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_07810 8feb397c1610281f91beb642302fac43 88 Pfam PF01197 Ribosomal protein L31 1 78 1.3E-27 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_07810 8feb397c1610281f91beb642302fac43 88 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 78 6.1E-19 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_07810 8feb397c1610281f91beb642302fac43 88 ProSitePatterns PS01143 Ribosomal protein L31 signature. 48 69 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_07810 8feb397c1610281f91beb642302fac43 88 Gene3D G3DSA:2.30.170.50 1 82 6.7E-24 T 11-10-2018 APT56_07810 8feb397c1610281f91beb642302fac43 88 SUPERFAMILY SSF143800 1 78 5.1E-20 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_20785 cdddab1e3d288cf4f1b3a76bca171387 325 SUPERFAMILY SSF53850 114 285 2.97E-16 T 11-10-2018 APT56_20785 cdddab1e3d288cf4f1b3a76bca171387 325 Gene3D G3DSA:3.40.190.10 127 250 2.0E-100 T 11-10-2018 APT56_20785 cdddab1e3d288cf4f1b3a76bca171387 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 321 1.6E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20785 cdddab1e3d288cf4f1b3a76bca171387 325 Gene3D G3DSA:3.40.190.150 28 297 2.0E-100 T 11-10-2018 APT56_20785 cdddab1e3d288cf4f1b3a76bca171387 325 PIRSF PIRSF017082 1 324 3.8E-76 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_09135 fa1b531d8ee487e477b1b55d53825329 495 Gene3D G3DSA:3.30.450.20 30 182 4.7E-34 T 11-10-2018 APT56_09135 fa1b531d8ee487e477b1b55d53825329 495 Gene3D G3DSA:3.30.450.20 185 273 4.3E-16 T 11-10-2018 APT56_09135 fa1b531d8ee487e477b1b55d53825329 495 Gene3D G3DSA:3.30.70.270 311 490 3.2E-59 T 11-10-2018 APT56_09135 fa1b531d8ee487e477b1b55d53825329 495 SMART SM00267 313 488 1.2E-62 T 11-10-2018 IPR000160 GGDEF domain APT56_09135 fa1b531d8ee487e477b1b55d53825329 495 Pfam PF02743 Cache domain 46 238 1.3E-16 T 11-10-2018 IPR033479 Double Cache domain 1 APT56_09135 fa1b531d8ee487e477b1b55d53825329 495 Pfam PF00990 Diguanylate cyclase, GGDEF domain 324 484 5.8E-48 T 11-10-2018 IPR000160 GGDEF domain APT56_09135 fa1b531d8ee487e477b1b55d53825329 495 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 320 488 1.2E-52 T 11-10-2018 IPR000160 GGDEF domain APT56_09135 fa1b531d8ee487e477b1b55d53825329 495 SUPERFAMILY SSF55073 329 490 7.85E-47 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_22345 84c89c18e6d85e4a9ba57a58b22f6ea5 534 PIRSF PIRSF002741 9 534 2.1E-140 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_22345 84c89c18e6d85e4a9ba57a58b22f6ea5 534 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 436 2.8E-90 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_22345 84c89c18e6d85e4a9ba57a58b22f6ea5 534 Gene3D G3DSA:3.10.105.10 287 501 7.8E-56 T 11-10-2018 APT56_22345 84c89c18e6d85e4a9ba57a58b22f6ea5 534 SUPERFAMILY SSF53850 34 528 2.9E-132 T 11-10-2018 APT56_22345 84c89c18e6d85e4a9ba57a58b22f6ea5 534 Gene3D G3DSA:3.40.190.10 25 286 4.1E-72 T 11-10-2018 APT56_04405 88ababdd4481ed60f3242961f94a8610 564 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 403 547 7.7E-40 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_04405 88ababdd4481ed60f3242961f94a8610 564 Gene3D G3DSA:3.40.50.1220 190 352 1.4E-42 T 11-10-2018 APT56_04405 88ababdd4481ed60f3242961f94a8610 564 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 437 456 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APT56_04405 88ababdd4481ed60f3242961f94a8610 564 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 197 333 8.4E-32 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT56_04405 88ababdd4481ed60f3242961f94a8610 564 Gene3D G3DSA:3.40.50.970 357 560 2.4E-58 T 11-10-2018 APT56_04405 88ababdd4481ed60f3242961f94a8610 564 SUPERFAMILY SSF52518 3 177 2.76E-50 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_04405 88ababdd4481ed60f3242961f94a8610 564 SUPERFAMILY SSF52467 189 392 2.7E-41 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_04405 88ababdd4481ed60f3242961f94a8610 564 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 172 7.3E-54 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_04405 88ababdd4481ed60f3242961f94a8610 564 Gene3D G3DSA:3.40.50.970 1 180 9.0E-57 T 11-10-2018 APT56_04405 88ababdd4481ed60f3242961f94a8610 564 SUPERFAMILY SSF52518 376 552 9.7E-56 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_17605 6d89b0797ac71f0ac271379885c83015 217 SUPERFAMILY SSF48498 96 203 2.34E-15 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_17605 6d89b0797ac71f0ac271379885c83015 217 SUPERFAMILY SSF46689 22 100 1.89E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_17605 6d89b0797ac71f0ac271379885c83015 217 ProSitePatterns PS01081 TetR-type HTH domain signature. 40 71 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_17605 6d89b0797ac71f0ac271379885c83015 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 74 1.1E-16 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17605 6d89b0797ac71f0ac271379885c83015 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 3.9E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17605 6d89b0797ac71f0ac271379885c83015 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 3.9E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17605 6d89b0797ac71f0ac271379885c83015 217 Gene3D G3DSA:1.10.357.10 6 204 2.3E-56 T 11-10-2018 APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 424 443 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 SUPERFAMILY SSF52518 364 566 8.68E-51 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 327 4.5E-25 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 Gene3D G3DSA:3.40.50.970 1 172 2.2E-55 T 11-10-2018 APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 167 1.5E-47 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 Gene3D G3DSA:3.40.50.970 357 587 5.8E-54 T 11-10-2018 APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 Gene3D G3DSA:3.40.50.1220 186 341 2.9E-41 T 11-10-2018 APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 SUPERFAMILY SSF52467 191 355 2.36E-40 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 SUPERFAMILY SSF52518 2 175 7.95E-47 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_23915 876dc7b93ed8814a62fde1aedc9f6915 589 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 542 1.6E-26 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_15145 30fb5b3663672b91f334db8237857473 501 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 10 429 3.1E-91 T 11-10-2018 APT56_15145 30fb5b3663672b91f334db8237857473 501 Gene3D G3DSA:2.40.50.140 3 73 4.5E-24 T 11-10-2018 APT56_15145 30fb5b3663672b91f334db8237857473 501 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 419 429 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site APT56_15145 30fb5b3663672b91f334db8237857473 501 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 363 397 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site APT56_15145 30fb5b3663672b91f334db8237857473 501 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 255 431 1.1E-14 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 APT56_15145 30fb5b3663672b91f334db8237857473 501 SUPERFAMILY SSF50249 5 59 1.09E-11 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_15145 30fb5b3663672b91f334db8237857473 501 SUPERFAMILY SSF53335 62 435 2.09E-77 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_15145 30fb5b3663672b91f334db8237857473 501 Gene3D G3DSA:3.40.50.150 74 431 1.6E-101 T 11-10-2018 APT56_15145 30fb5b3663672b91f334db8237857473 501 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 4 437 68.686 T 11-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 APT56_15145 30fb5b3663672b91f334db8237857473 501 Gene3D G3DSA:3.40.1350.30 121 263 1.6E-101 T 11-10-2018 APT56_03270 ffa9d7668d039d1011e59266bf19e7bd 635 Pfam PF00773 RNB domain 238 470 2.1E-35 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APT56_03270 ffa9d7668d039d1011e59266bf19e7bd 635 SUPERFAMILY SSF50249 230 566 4.11E-73 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_03270 ffa9d7668d039d1011e59266bf19e7bd 635 Pfam PF00773 RNB domain 474 514 6.4E-9 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APT56_03270 ffa9d7668d039d1011e59266bf19e7bd 635 SMART SM00955 235 516 5.0E-61 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 Pfam PF00005 ABC transporter 614 757 1.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 Pfam PF02653 Branched-chain amino acid transport system / permease component 34 295 3.2E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 ProSitePatterns PS00211 ABC transporters family signature. 730 744 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 SMART SM00382 359 553 6.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 SMART SM00382 623 806 2.1E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 SUPERFAMILY SSF52540 599 821 9.43E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 Pfam PF00005 ABC transporter 351 504 3.3E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 Gene3D G3DSA:3.40.50.300 596 829 2.6E-59 T 11-10-2018 APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 Gene3D G3DSA:3.40.50.300 331 577 2.4E-54 T 11-10-2018 APT56_27145 acff5a2c2a5a77912b4864ff1d6d0977 829 SUPERFAMILY SSF52540 334 575 2.24E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18315 b66939ee2b5b1d3a68043e8da73a6ceb 331 Gene3D G3DSA:3.40.190.10 133 256 3.1E-115 T 11-10-2018 APT56_18315 b66939ee2b5b1d3a68043e8da73a6ceb 331 PIRSF PIRSF017082 1 331 2.3E-79 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18315 b66939ee2b5b1d3a68043e8da73a6ceb 331 SUPERFAMILY SSF53850 117 293 4.75E-14 T 11-10-2018 APT56_18315 b66939ee2b5b1d3a68043e8da73a6ceb 331 Gene3D G3DSA:3.40.190.150 36 321 3.1E-115 T 11-10-2018 APT56_18315 b66939ee2b5b1d3a68043e8da73a6ceb 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 323 3.4E-91 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 SUPERFAMILY SSF47384 190 271 1.22E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 SUPERFAMILY SSF55785 85 195 3.62E-6 T 11-10-2018 IPR035965 PAS domain superfamily APT56_02625 5d099da581dd10e9761d49280debfc2d 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 425 4.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 367 4.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 4.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 381 4.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 94 424 7.0E-124 T 11-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 316 427 8.6E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_02625 5d099da581dd10e9761d49280debfc2d 435 Pfam PF00512 His Kinase A (phospho-acceptor) domain 204 271 4.1E-23 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 SUPERFAMILY SSF55874 262 425 2.36E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_02625 5d099da581dd10e9761d49280debfc2d 435 Gene3D G3DSA:1.10.287.130 196 272 1.1E-24 T 11-10-2018 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 SMART SM00388 203 272 1.3E-24 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 SMART SM00387 315 428 1.4E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_02625 5d099da581dd10e9761d49280debfc2d 435 Pfam PF11808 Domain of unknown function (DUF3329) 3 83 1.3E-12 T 11-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 APT56_02625 5d099da581dd10e9761d49280debfc2d 435 Gene3D G3DSA:3.30.565.10 280 430 6.7E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_03805 daf2c87c3d26df679d4c7bad78e115d4 203 SUPERFAMILY SSF88946 30 119 3.66E-19 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_03805 daf2c87c3d26df679d4c7bad78e115d4 203 Pfam PF04542 Sigma-70 region 2 39 103 9.8E-12 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_03805 daf2c87c3d26df679d4c7bad78e115d4 203 SUPERFAMILY SSF88659 126 194 4.11E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_03805 daf2c87c3d26df679d4c7bad78e115d4 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 36 194 5.1E-28 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_03805 daf2c87c3d26df679d4c7bad78e115d4 203 Gene3D G3DSA:1.10.10.10 135 198 6.0E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03805 daf2c87c3d26df679d4c7bad78e115d4 203 Gene3D G3DSA:1.10.1740.10 26 134 2.8E-21 T 11-10-2018 APT56_03805 daf2c87c3d26df679d4c7bad78e115d4 203 Pfam PF08281 Sigma-70, region 4 139 190 5.9E-13 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_26670 732def65cf68603e5a545507680addf8 308 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 3 301 8.8E-99 T 11-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 APT56_26670 732def65cf68603e5a545507680addf8 308 Pfam PF02603 HPr Serine kinase N terminus 3 127 2.3E-23 T 11-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 APT56_26670 732def65cf68603e5a545507680addf8 308 SUPERFAMILY SSF53795 132 298 1.95E-35 T 11-10-2018 APT56_26670 732def65cf68603e5a545507680addf8 308 Gene3D G3DSA:3.40.50.300 130 308 6.6E-65 T 11-10-2018 APT56_26670 732def65cf68603e5a545507680addf8 308 Gene3D G3DSA:3.40.1390.20 1 129 1.9E-23 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily APT56_26670 732def65cf68603e5a545507680addf8 308 Pfam PF07475 HPr Serine kinase C-terminal domain 129 299 1.5E-64 T 11-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 APT56_26670 732def65cf68603e5a545507680addf8 308 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 1 306 37.481 T 11-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 APT56_26670 732def65cf68603e5a545507680addf8 308 SUPERFAMILY SSF75138 7 131 1.7E-29 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 Pfam PF05199 GMC oxidoreductase 385 520 1.4E-39 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 Gene3D G3DSA:1.10.1220.110 96 148 1.4E-167 T 11-10-2018 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 PIRSF PIRSF000137 1 532 2.7E-142 T 11-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 Gene3D G3DSA:3.30.410.40 149 468 1.4E-167 T 11-10-2018 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 252 266 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 SUPERFAMILY SSF54373 288 471 5.1E-55 T 11-10-2018 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 Gene3D G3DSA:4.10.450.10 37 194 1.4E-167 T 11-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 SUPERFAMILY SSF51905 3 529 6.09E-80 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 Pfam PF00732 GMC oxidoreductase 4 293 2.8E-80 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_19605 cd912765b42e5a0e1d92a43ebc0ab522 532 Gene3D G3DSA:3.50.50.60 4 525 1.4E-167 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 SUPERFAMILY SSF53182 1 214 4.84E-71 T 11-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 4 215 4.5E-87 T 11-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 6.8E-46 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 6.8E-46 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 162 174 6.8E-46 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 6.8E-46 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 6.8E-46 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 Gene3D G3DSA:3.40.630.20 1 215 1.1E-79 T 11-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 PIRSF PIRSF015592 1 213 8.8E-82 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 11-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 Pfam PF01470 Pyroglutamyl peptidase 3 201 3.7E-79 T 11-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 11-10-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site MetaCyc: PWY-7942 APT56_13130 c5a02ca5778756e54874ff7bf91f8f1a 215 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 201 40.21 T 11-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 SUPERFAMILY SSF111326 7 555 2.75E-262 T 11-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 Pfam PF01175 Urocanase Rossmann-like domain 141 349 2.6E-87 T 11-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 Hamap MF_00577 Urocanate hydratase [hutU]. 2 556 50.787 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 Pfam PF17392 Urocanase C-terminal domain 352 546 8.3E-92 T 11-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 Pfam PF17391 Urocanase N-terminal domain 12 138 2.9E-62 T 11-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 554 0.0 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 PIRSF PIRSF001423 2 559 2.0E-296 T 11-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 Gene3D G3DSA:3.40.50.10730 142 349 1.1E-262 T 11-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 Gene3D G3DSA:3.40.1770.10 17 542 1.1E-262 T 11-10-2018 APT56_01665 082ef440b4de1435f873fdfb4a187b4d 559 ProSitePatterns PS01233 Urocanase signature. 442 457 - T 11-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_14085 a714d6085c35d0b43554f30fec5e854f 314 SUPERFAMILY SSF52317 3 156 9.61E-43 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_14085 a714d6085c35d0b43554f30fec5e854f 314 Pfam PF02016 LD-carboxypeptidase 12 299 1.8E-76 T 11-10-2018 IPR003507 Peptidase family S66 APT56_14085 a714d6085c35d0b43554f30fec5e854f 314 PIRSF PIRSF028757 1 313 4.1E-78 T 11-10-2018 IPR003507 Peptidase family S66 APT56_14085 a714d6085c35d0b43554f30fec5e854f 314 Gene3D G3DSA:3.50.30.60 162 314 3.3E-41 T 11-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily APT56_14085 a714d6085c35d0b43554f30fec5e854f 314 Gene3D G3DSA:3.40.50.10740 3 157 2.0E-49 T 11-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal APT56_14085 a714d6085c35d0b43554f30fec5e854f 314 SUPERFAMILY SSF141986 171 304 3.53E-36 T 11-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily APT56_13690 1a039c966d64a062437fa38767c91eef 520 Gene3D G3DSA:3.40.50.2000 6 483 1.0E-146 T 11-10-2018 APT56_13690 1a039c966d64a062437fa38767c91eef 520 SUPERFAMILY SSF53756 5 484 2.93E-99 T 11-10-2018 APT56_13690 1a039c966d64a062437fa38767c91eef 520 Hamap MF_00484 Glycogen synthase [glgA]. 4 485 37.073 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT56_13690 1a039c966d64a062437fa38767c91eef 520 Pfam PF00534 Glycosyl transferases group 1 296 451 4.7E-13 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_13690 1a039c966d64a062437fa38767c91eef 520 Pfam PF08323 Starch synthase catalytic domain 5 240 7.8E-67 T 11-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT56_13690 1a039c966d64a062437fa38767c91eef 520 Gene3D G3DSA:3.40.50.2000 253 469 1.0E-146 T 11-10-2018 APT56_13690 1a039c966d64a062437fa38767c91eef 520 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 5 484 1.7E-148 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APT56_20530 dbb7795dc0a0404cf375ebb0ebbf77ad 210 Gene3D G3DSA:2.30.110.10 1 207 5.2E-72 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_20530 dbb7795dc0a0404cf375ebb0ebbf77ad 210 PIRSF PIRSF010372 1 204 4.4E-69 T 11-10-2018 IPR007396 Transcriptional regulator PAI 2-type APT56_20530 dbb7795dc0a0404cf375ebb0ebbf77ad 210 SUPERFAMILY SSF50475 11 192 1.4E-40 T 11-10-2018 APT56_20530 dbb7795dc0a0404cf375ebb0ebbf77ad 210 Pfam PF04299 Putative FMN-binding domain 1 167 2.9E-64 T 11-10-2018 IPR007396 Transcriptional regulator PAI 2-type APT56_24645 372ea9cc2b68b780a4984fec0da0421a 385 Gene3D G3DSA:3.40.50.2000 176 364 1.7E-51 T 11-10-2018 APT56_24645 372ea9cc2b68b780a4984fec0da0421a 385 Pfam PF13439 Glycosyltransferase Family 4 18 180 5.4E-12 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_24645 372ea9cc2b68b780a4984fec0da0421a 385 Pfam PF13692 Glycosyl transferases group 1 202 343 6.0E-26 T 11-10-2018 APT56_24645 372ea9cc2b68b780a4984fec0da0421a 385 SUPERFAMILY SSF53756 7 380 8.07E-69 T 11-10-2018 APT56_24645 372ea9cc2b68b780a4984fec0da0421a 385 Gene3D G3DSA:3.40.50.2000 51 376 1.7E-51 T 11-10-2018 APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 3512 3884 4.71E-29 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 2739 3069 4.08E-30 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 3362 3562 9.73E-6 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 1430 1786 6.59E-28 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2310 2339 1.9E-4 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1980 2008 4.1E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 3175 3203 4.0E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1082 1111 5.9E-4 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2936 2963 1.0E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2676 2705 3.7E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 3623 3650 2.1E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 492 520 1.9E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 3752 3781 0.2 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1725 1746 0.0023 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 3532 3559 3.8E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2152 2180 1.1E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 751 780 0.01 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 837 865 4.9E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 407 435 5.5E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1894 1920 2.6E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2848 2877 2.2E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1363 1390 2.6E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 923 950 1.5E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1807 1835 1.1E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2066 2094 3.7E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2583 2610 5.3E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 3246 3275 5.9E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1543 1569 5.0E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2218 2246 1.1E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 3688 3715 8.2E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 3107 3134 5.4E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 3020 3048 1.0E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1629 1657 3.2E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 666 690 5.4E-4 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 578 606 4.0E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 1454 1483 0.0023 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 Pfam PF12951 Passenger-associated-transport-repeat 2762 2787 5.9E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SMART SM00869 4028 4296 2.2E-52 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 1200 1421 4.08E-7 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3536 3560 9.2E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 751 781 1.0E-4 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2309 2339 4.9E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3020 3050 7.9E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1362 1391 2.0E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 491 521 2.7E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3688 3715 8.1E-11 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1805 1836 8.4E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 408 436 3.3E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2069 2096 5.8E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2761 2787 8.8E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2151 2179 1.1E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 922 952 1.1E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2847 2878 1.9E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2675 2706 2.9E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 665 690 3.5E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3245 3276 3.9E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1542 1573 1.9E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1725 1747 1.8E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 836 865 5.6E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3621 3650 1.1E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2217 2247 1.0E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 577 608 1.4E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1081 1112 1.0E-4 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3106 3134 4.2E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1978 2009 1.3E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2936 2964 3.1E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2581 2611 3.5E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1895 1922 5.4E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 3174 3203 4.5E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 2995 3361 5.96E-29 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 1870 2254 1.73E-30 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 2443 2736 4.71E-8 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF103515 3970 4306 1.96E-66 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 385 890 3.45E-22 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 900 1201 2.2E-19 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14230 00b1b0c73841cf64304c06903724716f 4306 SUPERFAMILY SSF51126 2193 2446 2.98E-15 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_18115 09e7522d5b698be0d7b143e4c4b2b334 305 Gene3D G3DSA:1.10.10.10 1 84 3.9E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18115 09e7522d5b698be0d7b143e4c4b2b334 305 SUPERFAMILY SSF46785 2 82 9.4E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18115 09e7522d5b698be0d7b143e4c4b2b334 305 Pfam PF03466 LysR substrate binding domain 93 297 4.6E-21 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_18115 09e7522d5b698be0d7b143e4c4b2b334 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.9E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18115 09e7522d5b698be0d7b143e4c4b2b334 305 Gene3D G3DSA:3.40.190.10 93 292 4.8E-52 T 11-10-2018 APT56_18115 09e7522d5b698be0d7b143e4c4b2b334 305 Gene3D G3DSA:3.40.190.10 169 268 4.8E-52 T 11-10-2018 APT56_18115 09e7522d5b698be0d7b143e4c4b2b334 305 SUPERFAMILY SSF53850 92 295 7.96E-34 T 11-10-2018 APT56_21845 bfffa8c2334941c3525b4a9abe200bfc 277 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 14 275 3.6E-84 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 APT56_21845 bfffa8c2334941c3525b4a9abe200bfc 277 Gene3D G3DSA:1.10.3720.10 61 277 4.7E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21845 bfffa8c2334941c3525b4a9abe200bfc 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 273 4.0E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_21845 bfffa8c2334941c3525b4a9abe200bfc 277 SUPERFAMILY SSF161098 23 271 1.78E-35 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11325 16958460e6f2b8177201176ea7cd3237 478 TIGRFAM TIGR00937 2A51: chromate efflux transporter 38 413 8.8E-62 T 11-10-2018 IPR014047 Chromate transporter, long chain APT56_11325 16958460e6f2b8177201176ea7cd3237 478 PIRSF PIRSF004810 13 475 4.8E-126 T 11-10-2018 IPR014047 Chromate transporter, long chain APT56_11325 16958460e6f2b8177201176ea7cd3237 478 Pfam PF02417 Chromate transporter 274 468 8.5E-33 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT56_11325 16958460e6f2b8177201176ea7cd3237 478 Pfam PF02417 Chromate transporter 32 194 1.6E-29 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT56_13510 a8d4dfae61bd3ea2aeb642f6ef2a38c4 526 SUPERFAMILY SSF53720 20 519 3.01E-98 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_13510 a8d4dfae61bd3ea2aeb642f6ef2a38c4 526 Pfam PF00171 Aldehyde dehydrogenase family 20 468 4.6E-45 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_13510 a8d4dfae61bd3ea2aeb642f6ef2a38c4 526 Gene3D G3DSA:3.40.309.10 268 457 2.2E-203 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_13510 a8d4dfae61bd3ea2aeb642f6ef2a38c4 526 Gene3D G3DSA:3.40.605.10 43 522 2.2E-203 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_10705 fb94cd553370f795b326ea850b1c1362 301 Gene3D G3DSA:3.40.190.10 163 263 9.6E-59 T 11-10-2018 APT56_10705 fb94cd553370f795b326ea850b1c1362 301 Gene3D G3DSA:3.40.190.10 91 289 9.6E-59 T 11-10-2018 APT56_10705 fb94cd553370f795b326ea850b1c1362 301 Gene3D G3DSA:1.10.10.10 3 88 1.4E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10705 fb94cd553370f795b326ea850b1c1362 301 SUPERFAMILY SSF53850 90 295 1.68E-40 T 11-10-2018 APT56_10705 fb94cd553370f795b326ea850b1c1362 301 SUPERFAMILY SSF46785 4 83 5.36E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10705 fb94cd553370f795b326ea850b1c1362 301 Pfam PF03466 LysR substrate binding domain 89 292 1.2E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_10705 fb94cd553370f795b326ea850b1c1362 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.6E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 SUPERFAMILY SSF52540 1577 1888 5.49E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 Gene3D G3DSA:3.30.190.20 1175 1296 1.3E-27 T 11-10-2018 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 SMART SM00382 675 962 0.62 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 SMART SM00382 1594 1881 2.9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 SMART SM00382 1072 1526 2.9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 SUPERFAMILY SSF52540 1055 1531 2.18E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 Pfam PF00005 ABC transporter 666 894 2.6E-6 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 SUPERFAMILY SSF52540 664 966 2.12E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 SUPERFAMILY SSF52540 6 613 1.67E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 Gene3D G3DSA:3.40.50.300 1314 1559 1.5E-57 T 11-10-2018 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 ProSitePatterns PS00211 ABC transporters family signature. 1449 1463 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 Gene3D G3DSA:1.20.1580.10 1655 1792 7.5E-131 T 11-10-2018 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 ProSitePatterns PS00211 ABC transporters family signature. 1792 1806 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 Gene3D G3DSA:3.40.50.300 1575 1912 7.5E-131 T 11-10-2018 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 Gene3D G3DSA:1.20.1580.10 734 876 1.5E-128 T 11-10-2018 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 Gene3D G3DSA:3.40.50.300 659 992 1.5E-128 T 11-10-2018 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 980 2.5E-288 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 APT56_05035 e6b2a6364ecacde4d4d0afc8308df6f7 1919 Gene3D G3DSA:3.40.50.300 1040 1162 8.5E-27 T 11-10-2018 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 Gene3D G3DSA:2.40.50.100 80 136 4.9E-6 T 11-10-2018 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 85 105 1.0E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 43 66 1.0E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 314 335 1.0E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 371 394 1.0E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 414 429 1.0E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 429 449 1.0E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 347 371 1.0E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 35 446 8.2E-123 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 Gene3D G3DSA:2.40.30.170 339 419 1.7E-12 T 11-10-2018 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 Pfam PF00529 HlyD membrane-fusion protein of T1SS 45 406 5.9E-17 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 Gene3D G3DSA:1.10.287.470 233 301 1.7E-12 T 11-10-2018 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 ProSitePatterns PS00543 HlyD family secretion proteins signature. 414 436 - T 11-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 APT56_25305 71aa52468bee12ed0cd04bc258a7fb5d 450 Gene3D G3DSA:2.40.50.100 302 338 1.7E-12 T 11-10-2018 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Pfam PF00009 Elongation factor Tu GTP binding domain 523 678 1.9E-34 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 SUPERFAMILY SSF50447 919 1015 6.65E-32 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 60 97 3.2E-15 T 11-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Pfam PF11987 Translation-initiation factor 2 803 907 1.9E-36 T 11-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Gene3D G3DSA:3.40.50.300 516 689 4.7E-70 T 11-10-2018 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 435 1017 1.4E-251 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Gene3D G3DSA:2.40.30.10 919 1016 2.4E-29 T 11-10-2018 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Gene3D G3DSA:2.40.30.10 690 809 7.8E-39 T 11-10-2018 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 1015 17.345 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 50 7.0E-9 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 441 491 3.9E-15 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 SUPERFAMILY SSF52156 796 924 3.14E-37 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 SUPERFAMILY SSF50447 691 773 3.12E-25 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 ProSitePatterns PS01176 Initiation factor 2 signature. 968 990 - T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 SUPERFAMILY SSF52540 513 687 1.52E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Gene3D G3DSA:3.40.50.10050 811 918 4.1E-38 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 Gene3D G3DSA:3.30.56.50 3 51 2.3E-5 T 11-10-2018 APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 SUPERFAMILY SSF46955 4 51 3.84E-9 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_07910 7bf2438e3f49b6985355999a74978e34 1017 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 522 677 1.1E-31 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Gene3D G3DSA:2.160.10.10 954 1085 1.0E-9 T 11-10-2018 APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Gene3D G3DSA:2.160.10.10 1218 1323 3.5E-13 T 11-10-2018 APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Gene3D G3DSA:2.160.10.10 723 836 2.4E-8 T 11-10-2018 APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Pfam PF13193 AMP-binding enzyme C-terminal domain 414 488 2.0E-10 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 SUPERFAMILY SSF56801 14 504 1.3E-140 T 11-10-2018 APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Pfam PF00550 Phosphopantetheine attachment site 532 584 3.1E-6 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Pfam PF00501 AMP-binding enzyme 24 406 3.8E-86 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 ProSitePatterns PS00012 Phosphopantetheine attachment site. 542 557 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Gene3D G3DSA:3.40.50.12780 12 398 1.0E-112 T 11-10-2018 APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 TIGRFAM TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function 617 1317 4.9E-207 T 11-10-2018 IPR012728 Non-ribosomal peptide synthetase, C-terminal APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Gene3D G3DSA:1.10.1200.10 505 591 2.7E-10 T 11-10-2018 IPR036736 ACP-like superfamily APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Gene3D G3DSA:3.30.300.30 399 504 4.3E-30 T 11-10-2018 APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 SUPERFAMILY SSF51161 1204 1321 1.8E-17 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 SUPERFAMILY SSF51161 969 1079 1.28E-17 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 SUPERFAMILY SSF47336 531 604 1.57E-7 T 11-10-2018 IPR036736 ACP-like superfamily APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 ProSitePatterns PS00455 Putative AMP-binding domain signature. 157 168 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 1267 1295 0.0054 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 42 430 4.6E-113 T 11-10-2018 IPR010071 Amino acid adenylation domain APT56_08255 7045fcceea26edc3be9e9ca97b1141b2 1323 SUPERFAMILY SSF51161 716 835 3.47E-14 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 SUPERFAMILY SSF50104 121 176 8.53E-20 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 Gene3D G3DSA:2.30.30.30 120 176 7.1E-27 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 SMART SM00739 123 150 4.8E-6 T 11-10-2018 IPR005824 KOW APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 1.7E-69 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 Pfam PF02357 Transcription termination factor nusG 3 108 2.7E-27 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 Gene3D G3DSA:3.30.70.940 1 119 2.1E-47 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 25.873 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 1.6E-20 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 1.6E-20 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 1.6E-20 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 Pfam PF00467 KOW motif 126 158 2.6E-7 T 11-10-2018 IPR005824 KOW APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 11-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 SUPERFAMILY SSF82679 3 113 2.22E-38 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APT56_00035 1044b1b101d2db242c2be4e16a7a7394 177 SMART SM00738 2 111 5.5E-48 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APT56_14945 b44345b5f00bcbe7567afe4ca4fdf8bc 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 248 2.7E-70 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_14945 b44345b5f00bcbe7567afe4ca4fdf8bc 250 SMART SM00062 30 249 2.0E-70 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_14945 b44345b5f00bcbe7567afe4ca4fdf8bc 250 SMART SM00079 30 248 7.2E-9 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 APT56_14945 b44345b5f00bcbe7567afe4ca4fdf8bc 250 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 52 65 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_14945 b44345b5f00bcbe7567afe4ca4fdf8bc 250 Gene3D G3DSA:3.40.190.10 114 209 2.4E-82 T 11-10-2018 APT56_14945 b44345b5f00bcbe7567afe4ca4fdf8bc 250 SUPERFAMILY SSF53850 3 249 2.85E-76 T 11-10-2018 APT56_14945 b44345b5f00bcbe7567afe4ca4fdf8bc 250 Gene3D G3DSA:3.40.190.10 33 246 2.4E-82 T 11-10-2018 APT56_21185 be49cd2bca12be5e0f1fc651c0de60a0 145 SUPERFAMILY SSF56214 16 142 2.09E-26 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_21185 be49cd2bca12be5e0f1fc651c0de60a0 145 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 18 121 7.8E-19 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_21185 be49cd2bca12be5e0f1fc651c0de60a0 145 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 17 143 24.642 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 APT56_21185 be49cd2bca12be5e0f1fc651c0de60a0 145 Gene3D G3DSA:3.90.470.20 13 144 6.1E-31 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_21185 be49cd2bca12be5e0f1fc651c0de60a0 145 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 16 143 2.9E-19 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 APT56_21185 be49cd2bca12be5e0f1fc651c0de60a0 145 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 22 126 7.0E-48 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 APT56_21185 be49cd2bca12be5e0f1fc651c0de60a0 145 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 16 143 2.1E-27 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 APT56_23510 2bed8e75fdafa62f4e301cff5ac95389 208 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 41 183 2.2E-12 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_23510 2bed8e75fdafa62f4e301cff5ac95389 208 SMART SM00478 45 201 2.9E-16 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_23510 2bed8e75fdafa62f4e301cff5ac95389 208 Gene3D G3DSA:1.10.1670.40 8 198 1.2E-67 T 11-10-2018 APT56_23510 2bed8e75fdafa62f4e301cff5ac95389 208 Gene3D G3DSA:1.10.340.30 33 148 1.2E-67 T 11-10-2018 APT56_23510 2bed8e75fdafa62f4e301cff5ac95389 208 SUPERFAMILY SSF48150 30 199 3.49E-42 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT56_00190 dbfe831a8f4416e491e56228b672eb1f 332 Gene3D G3DSA:3.40.190.10 129 257 5.3E-53 T 11-10-2018 APT56_00190 dbfe831a8f4416e491e56228b672eb1f 332 Gene3D G3DSA:3.40.190.150 35 322 5.3E-53 T 11-10-2018 APT56_00190 dbfe831a8f4416e491e56228b672eb1f 332 PIRSF PIRSF017082 1 332 7.6E-73 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00190 dbfe831a8f4416e491e56228b672eb1f 332 SUPERFAMILY SSF53850 100 283 4.25E-9 T 11-10-2018 APT56_00190 dbfe831a8f4416e491e56228b672eb1f 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 114 326 1.4E-19 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 Gene3D G3DSA:3.40.50.300 289 556 2.3E-75 T 11-10-2018 APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 SUPERFAMILY SSF52540 305 533 2.92E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 SMART SM00382 31 245 4.4E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 SMART SM00382 351 529 2.2E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 Gene3D G3DSA:3.40.50.300 1 288 1.5E-81 T 11-10-2018 APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 556 9.1E-292 T 11-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 SUPERFAMILY SSF52540 12 239 2.62E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 Pfam PF12848 ABC transporter 233 309 1.2E-12 T 11-10-2018 IPR032781 ABC-transporter extension domain APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 Pfam PF00005 ABC transporter 343 476 2.6E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_05185 f9ae9cc1ac2af8e7b351bbe8880dc6b7 557 Pfam PF00005 ABC transporter 22 194 9.4E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15255 9642f443abba9d2918dcd226391ddd27 282 Gene3D G3DSA:3.40.50.1000 6 238 9.8E-15 T 11-10-2018 IPR023214 HAD superfamily APT56_15255 9642f443abba9d2918dcd226391ddd27 282 SUPERFAMILY SSF56784 5 222 1.68E-12 T 11-10-2018 IPR036412 HAD-like superfamily APT56_15255 9642f443abba9d2918dcd226391ddd27 282 Pfam PF12710 haloacid dehalogenase-like hydrolase 8 210 3.9E-7 T 11-10-2018 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 3.3E-39 T 11-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.8E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.8E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.8E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.8E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 Gene3D G3DSA:1.10.150.300 113 200 1.7E-149 T 11-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 Gene3D G3DSA:3.10.20.30 48 361 1.7E-149 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 SUPERFAMILY SSF81271 279 359 8.28E-36 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 43.694 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 PIRSF PIRSF006641 1 363 9.3E-151 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 2.7E-155 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 SUPERFAMILY SSF52540 3 301 2.59E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 Gene3D G3DSA:3.40.50.300 3 278 1.7E-149 T 11-10-2018 APT56_24475 9fc9a19e17be30ae7481ceb9819a84bb 363 Pfam PF01926 50S ribosome-binding GTPase 5 122 1.2E-22 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_21760 e6d5d4053ce2144b682f0f4f53567b04 234 SMART SM00028 155 188 20.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_21760 e6d5d4053ce2144b682f0f4f53567b04 234 SMART SM00028 189 222 0.0026 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_21760 e6d5d4053ce2144b682f0f4f53567b04 234 SMART SM00028 87 120 0.0056 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_21760 e6d5d4053ce2144b682f0f4f53567b04 234 Gene3D G3DSA:1.25.40.10 157 230 3.1E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_21760 e6d5d4053ce2144b682f0f4f53567b04 234 Pfam PF13432 Tetratricopeptide repeat 162 222 2.0E-6 T 11-10-2018 APT56_21760 e6d5d4053ce2144b682f0f4f53567b04 234 Pfam PF13432 Tetratricopeptide repeat 59 120 2.1E-6 T 11-10-2018 APT56_21760 e6d5d4053ce2144b682f0f4f53567b04 234 Gene3D G3DSA:1.25.40.10 25 156 4.3E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_21760 e6d5d4053ce2144b682f0f4f53567b04 234 SUPERFAMILY SSF48452 67 224 5.84E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_23260 1ec09a22e692219a4270b74ee97a71e1 261 Gene3D G3DSA:3.40.190.10 118 217 2.5E-73 T 11-10-2018 APT56_23260 1ec09a22e692219a4270b74ee97a71e1 261 Gene3D G3DSA:3.40.190.10 34 248 2.5E-73 T 11-10-2018 APT56_23260 1ec09a22e692219a4270b74ee97a71e1 261 SMART SM00062 35 256 4.4E-70 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_23260 1ec09a22e692219a4270b74ee97a71e1 261 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 58 71 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_23260 1ec09a22e692219a4270b74ee97a71e1 261 SUPERFAMILY SSF53850 7 256 7.26E-70 T 11-10-2018 APT56_23260 1ec09a22e692219a4270b74ee97a71e1 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 254 4.1E-65 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_01905 3a473fb61e4ba8a3e7a68825d3b60c81 264 SUPERFAMILY SSF88713 24 252 2.72E-42 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_01905 3a473fb61e4ba8a3e7a68825d3b60c81 264 Gene3D G3DSA:3.20.20.370 26 256 7.2E-38 T 11-10-2018 APT56_01905 3a473fb61e4ba8a3e7a68825d3b60c81 264 Pfam PF01522 Polysaccharide deacetylase 29 177 1.9E-21 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT56_23685 49fa9268a2111839547dd3086b7a76a5 262 Gene3D G3DSA:1.10.10.60 158 260 8.1E-21 T 11-10-2018 APT56_23685 49fa9268a2111839547dd3086b7a76a5 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 251 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_23685 49fa9268a2111839547dd3086b7a76a5 262 SUPERFAMILY SSF46689 210 257 2.69E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23685 49fa9268a2111839547dd3086b7a76a5 262 SUPERFAMILY SSF51182 29 182 8.6E-19 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_23685 49fa9268a2111839547dd3086b7a76a5 262 Gene3D G3DSA:2.60.120.10 19 117 2.5E-6 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_23685 49fa9268a2111839547dd3086b7a76a5 262 SMART SM00342 173 255 3.2E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23685 49fa9268a2111839547dd3086b7a76a5 262 Pfam PF12833 Helix-turn-helix domain 181 257 2.1E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23685 49fa9268a2111839547dd3086b7a76a5 262 Pfam PF02311 AraC-like ligand binding domain 26 139 1.7E-11 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_27745 046fdca47618dec1e62e01ed89d186c3 269 Gene3D G3DSA:2.60.120.330 48 231 4.1E-54 T 11-10-2018 IPR027443 Isopenicillin N synthase-like APT56_27745 046fdca47618dec1e62e01ed89d186c3 269 SUPERFAMILY SSF51197 76 248 4.12E-21 T 11-10-2018 APT56_27745 046fdca47618dec1e62e01ed89d186c3 269 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 69 225 5.9E-47 T 11-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 Pfam PF01568 Molydopterin dinucleotide binding domain 690 810 1.7E-22 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 SUPERFAMILY SSF53706 52 674 4.71E-163 T 11-10-2018 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 Pfam PF00384 Molybdopterin oxidoreductase 93 574 2.6E-74 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 Gene3D G3DSA:3.40.50.740 93 582 6.5E-227 T 11-10-2018 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 730 757 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 Gene3D G3DSA:2.40.40.20 663 827 8.4E-48 T 11-10-2018 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 Gene3D G3DSA:3.40.228.10 192 655 6.5E-227 T 11-10-2018 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 516 533 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 SUPERFAMILY SSF50692 683 832 4.21E-42 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APT56_11055 12e577a42ba7301b3cdd2caba3b9636a 843 Gene3D G3DSA:3.90.55.10 84 629 6.5E-227 T 11-10-2018 APT56_00945 457deed5c232884a885b414e03b628c9 337 SUPERFAMILY SSF53822 66 319 6.75E-66 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_00945 457deed5c232884a885b414e03b628c9 337 Gene3D G3DSA:3.40.50.2300 166 294 8.6E-71 T 11-10-2018 APT56_00945 457deed5c232884a885b414e03b628c9 337 Pfam PF13377 Periplasmic binding protein-like domain 174 331 8.0E-33 T 11-10-2018 APT56_00945 457deed5c232884a885b414e03b628c9 337 SUPERFAMILY SSF47413 8 66 5.25E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_00945 457deed5c232884a885b414e03b628c9 337 Gene3D G3DSA:3.40.50.2300 63 311 8.6E-71 T 11-10-2018 APT56_00945 457deed5c232884a885b414e03b628c9 337 Gene3D G3DSA:1.10.260.40 2 62 1.9E-17 T 11-10-2018 APT56_00945 457deed5c232884a885b414e03b628c9 337 SMART SM00354 8 78 1.7E-22 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_00945 457deed5c232884a885b414e03b628c9 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 55 7.6E-11 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_27015 af2b1640fb946bec1f04717bf22c8a40 253 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 20 239 34.575 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_27015 af2b1640fb946bec1f04717bf22c8a40 253 Gene3D G3DSA:3.40.470.10 4 246 5.9E-81 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_27015 af2b1640fb946bec1f04717bf22c8a40 253 SMART SM00986 63 228 2.1E-32 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_27015 af2b1640fb946bec1f04717bf22c8a40 253 SMART SM00987 63 228 2.1E-32 T 11-10-2018 APT56_27015 af2b1640fb946bec1f04717bf22c8a40 253 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 71 80 - T 11-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_27015 af2b1640fb946bec1f04717bf22c8a40 253 Pfam PF03167 Uracil DNA glycosylase superfamily 64 227 3.2E-22 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_27015 af2b1640fb946bec1f04717bf22c8a40 253 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 22 232 1.8E-68 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_27015 af2b1640fb946bec1f04717bf22c8a40 253 SUPERFAMILY SSF52141 19 240 2.4E-74 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_18625 5a97d0d77f9862b566522c924ea0eac9 227 Gene3D G3DSA:3.50.30.100 2 196 7.9E-57 T 11-10-2018 APT56_18625 5a97d0d77f9862b566522c924ea0eac9 227 SUPERFAMILY SSF89562 26 182 9.29E-47 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily APT56_18625 5a97d0d77f9862b566522c924ea0eac9 227 Pfam PF03737 Aldolase/RraA 29 174 1.8E-43 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein APT56_12645 1f355aa40ba38a9ef6dc394d6fac3e7e 328 SUPERFAMILY SSF90002 237 310 4.45E-7 T 11-10-2018 APT56_12645 1f355aa40ba38a9ef6dc394d6fac3e7e 328 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 173 2.1E-39 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT56_12645 1f355aa40ba38a9ef6dc394d6fac3e7e 328 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 237 314 2.4E-11 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT56_12645 1f355aa40ba38a9ef6dc394d6fac3e7e 328 Gene3D G3DSA:3.40.50.300 1 194 2.5E-50 T 11-10-2018 APT56_12645 1f355aa40ba38a9ef6dc394d6fac3e7e 328 SMART SM00833 237 327 4.1E-4 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT56_12645 1f355aa40ba38a9ef6dc394d6fac3e7e 328 SUPERFAMILY SSF52540 3 169 8.54E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19595 e31918ece2fc09a6299632a771d6f9cf 272 SMART SM00062 42 262 8.6E-42 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_19595 e31918ece2fc09a6299632a771d6f9cf 272 Gene3D G3DSA:3.40.190.10 129 220 1.5E-53 T 11-10-2018 APT56_19595 e31918ece2fc09a6299632a771d6f9cf 272 Gene3D G3DSA:3.40.190.10 34 255 1.5E-53 T 11-10-2018 APT56_19595 e31918ece2fc09a6299632a771d6f9cf 272 SUPERFAMILY SSF53850 16 262 9.97E-55 T 11-10-2018 APT56_19595 e31918ece2fc09a6299632a771d6f9cf 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 260 2.7E-49 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_17220 6a0cec8fc449918733143c421c7c7d58 185 Pfam PF07209 Protein of unknown function (DUF1415) 11 179 3.7E-70 T 11-10-2018 IPR009858 Protein of unknown function DUF1415 APT56_18155 7616c4b72c6794143b0216d021aed1ea 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 293 3.7E-45 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_07680 7aa81a9fae2b0988bcdf9a6262631d60 299 SUPERFAMILY SSF161098 14 266 1.4E-55 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07680 7aa81a9fae2b0988bcdf9a6262631d60 299 Gene3D G3DSA:1.10.3720.10 18 275 2.2E-63 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07680 7aa81a9fae2b0988bcdf9a6262631d60 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 266 1.4E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_07680 7aa81a9fae2b0988bcdf9a6262631d60 299 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 16 275 1.0E-127 T 11-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 APT56_07680 7aa81a9fae2b0988bcdf9a6262631d60 299 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 19 273 6.5E-100 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 Gene3D G3DSA:2.40.50.940 222 352 1.8E-6 T 11-10-2018 APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 Pfam PF08402 TOBE domain 283 355 4.6E-10 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 Gene3D G3DSA:2.40.50.140 287 349 1.8E-6 T 11-10-2018 APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 Gene3D G3DSA:3.40.50.300 4 221 1.9E-72 T 11-10-2018 APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 SUPERFAMILY SSF52540 4 242 2.32E-89 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 Pfam PF00005 ABC transporter 19 161 2.5E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 SUPERFAMILY SSF50331 253 356 5.1E-8 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15075 8303f04a24cf518bf7f92b4acb9b1ebe 358 SMART SM00382 28 211 1.5E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17565 c5d91973536838774bd51d3c951dd65a 436 SUPERFAMILY SSF103473 14 429 1.22E-86 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_17565 c5d91973536838774bd51d3c951dd65a 436 Pfam PF07690 Major Facilitator Superfamily 34 395 1.6E-46 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_17565 c5d91973536838774bd51d3c951dd65a 436 Gene3D G3DSA:1.20.1250.20 15 433 6.0E-82 T 11-10-2018 APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 Gene3D G3DSA:3.30.70.270 382 556 2.0E-57 T 11-10-2018 APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 Gene3D G3DSA:3.30.450.40 70 129 3.6E-6 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 Gene3D G3DSA:2.10.70.100 205 252 4.8E-13 T 11-10-2018 APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SUPERFAMILY SSF55785 288 391 8.08E-15 T 11-10-2018 IPR035965 PAS domain superfamily APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 Gene3D G3DSA:3.30.450.20 266 380 6.7E-19 T 11-10-2018 APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 Pfam PF00990 Diguanylate cyclase, GGDEF domain 393 551 1.1E-45 T 11-10-2018 IPR000160 GGDEF domain APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SUPERFAMILY SSF55073 398 553 8.63E-49 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 390 553 1.6E-48 T 11-10-2018 IPR000160 GGDEF domain APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 Gene3D G3DSA:3.30.450.20 130 201 1.2E-16 T 11-10-2018 APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SMART SM00267 382 555 3.5E-60 T 11-10-2018 IPR000160 GGDEF domain APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SUPERFAMILY SSF55781 27 116 6.98E-8 T 11-10-2018 APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 Pfam PF08447 PAS fold 156 244 2.9E-24 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 Pfam PF08447 PAS fold 291 374 3.2E-9 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 286 389 7.8E-6 T 11-10-2018 IPR000014 PAS domain APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 158 257 1.3E-7 T 11-10-2018 IPR000014 PAS domain APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SUPERFAMILY SSF55785 142 252 1.3E-19 T 11-10-2018 IPR035965 PAS domain superfamily APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SMART SM00086 208 251 2.0E-5 T 11-10-2018 IPR001610 PAC motif APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SMART SM00086 341 382 0.53 T 11-10-2018 IPR001610 PAC motif APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SMART SM00091 263 335 2.8 T 11-10-2018 IPR000014 PAS domain APT56_10990 c5908196f6694d543dfdd09acbd92fb7 558 SMART SM00091 133 201 2.1E-4 T 11-10-2018 IPR000014 PAS domain APT56_04915 661cf726dec50b45101996d6e62bb9b3 569 SUPERFAMILY SSF47203 294 453 2.09E-40 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_04915 661cf726dec50b45101996d6e62bb9b3 569 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 296 451 2.5E-33 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_04915 661cf726dec50b45101996d6e62bb9b3 569 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 187 285 9.3E-18 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_04915 661cf726dec50b45101996d6e62bb9b3 569 Gene3D G3DSA:1.20.140.10 297 453 6.7E-39 T 11-10-2018 APT56_04915 661cf726dec50b45101996d6e62bb9b3 569 Gene3D G3DSA:2.40.110.20 144 296 4.7E-47 T 11-10-2018 APT56_04915 661cf726dec50b45101996d6e62bb9b3 569 SUPERFAMILY SSF56645 102 305 3.66E-43 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_04915 661cf726dec50b45101996d6e62bb9b3 569 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 410 429 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_17385 0a603828b58dbecb36012677dad48d88 221 SUPERFAMILY SSF64518 1 174 3.14E-51 T 11-10-2018 APT56_17385 0a603828b58dbecb36012677dad48d88 221 Gene3D G3DSA:2.170.280.10 176 189 1.8E-62 T 11-10-2018 APT56_17385 0a603828b58dbecb36012677dad48d88 221 Gene3D G3DSA:1.20.58.1830 9 32 1.8E-62 T 11-10-2018 APT56_17385 0a603828b58dbecb36012677dad48d88 221 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 139 1.4E-34 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 APT56_17385 0a603828b58dbecb36012677dad48d88 221 Gene3D G3DSA:1.20.1330.10 44 175 1.8E-62 T 11-10-2018 APT56_17385 0a603828b58dbecb36012677dad48d88 221 PRINTS PR00207 Flagellin signature 75 94 1.2E-22 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_17385 0a603828b58dbecb36012677dad48d88 221 PRINTS PR00207 Flagellin signature 110 133 1.2E-22 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_17385 0a603828b58dbecb36012677dad48d88 221 PRINTS PR00207 Flagellin signature 36 53 1.2E-22 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 APT56_02875 c4a54488a0f85e32f37e5d28e2ce3832 484 Gene3D G3DSA:1.20.1720.10 28 257 7.5E-49 T 11-10-2018 APT56_02875 c4a54488a0f85e32f37e5d28e2ce3832 484 Gene3D G3DSA:1.20.1250.20 276 469 3.2E-18 T 11-10-2018 APT56_02875 c4a54488a0f85e32f37e5d28e2ce3832 484 SUPERFAMILY SSF103473 15 467 9.16E-62 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_02875 c4a54488a0f85e32f37e5d28e2ce3832 484 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 32 433 7.4E-73 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 APT56_02875 c4a54488a0f85e32f37e5d28e2ce3832 484 Pfam PF07690 Major Facilitator Superfamily 31 237 6.1E-35 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_02875 c4a54488a0f85e32f37e5d28e2ce3832 484 Pfam PF07690 Major Facilitator Superfamily 289 472 2.7E-11 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_17225 5eb69b76920477e2bee12a179d94fb8a 123 TIGRFAM TIGR00494 crcB: protein CrcB 4 119 5.3E-25 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APT56_17225 5eb69b76920477e2bee12a179d94fb8a 123 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 121 18.897 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APT56_17225 5eb69b76920477e2bee12a179d94fb8a 123 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 4 116 2.0E-22 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 ProSitePatterns PS00450 Aconitase family signature 1. 705 722 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 Gene3D G3DSA:1.25.40.310 1 161 3.2E-67 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 Gene3D G3DSA:3.30.499.10 405 532 2.0E-150 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 1.3E-95 T 11-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 Pfam PF11791 Aconitate B N-terminal domain 5 156 2.0E-64 T 11-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 SUPERFAMILY SSF52016 162 372 1.96E-65 T 11-10-2018 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 SUPERFAMILY SSF74778 1 160 1.7E-66 T 11-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 PIRSF PIRSF036687 1 861 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 856 0.0 T 11-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 Gene3D G3DSA:3.20.19.10 162 361 1.7E-70 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 Gene3D G3DSA:3.30.499.10 686 863 2.0E-64 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 SUPERFAMILY SSF53732 380 855 8.76E-145 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 ProSitePatterns PS01244 Aconitase family signature 2. 763 776 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 Gene3D G3DSA:3.40.1060.10 385 684 2.0E-150 T 11-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT56_21740 f6d6f79a0324cf68d520fbf8b8decff6 863 Pfam PF00330 Aconitase family (aconitate hydratase) 474 816 2.7E-39 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 Gene3D G3DSA:2.40.50.100 3 82 9.0E-20 T 11-10-2018 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 Gene3D G3DSA:2.40.50.100 119 196 3.5E-19 T 11-10-2018 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 Gene3D G3DSA:3.30.559.10 309 552 7.6E-96 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 SUPERFAMILY SSF47005 246 291 6.28E-12 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 SUPERFAMILY SSF52777 314 550 4.27E-85 T 11-10-2018 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 SUPERFAMILY SSF51230 3 96 1.17E-22 T 11-10-2018 IPR011053 Single hybrid motif APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 98 552 1.2E-195 T 11-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 SUPERFAMILY SSF51230 119 211 1.31E-21 T 11-10-2018 IPR011053 Single hybrid motif APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 Pfam PF00364 Biotin-requiring enzyme 121 191 5.6E-19 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 Pfam PF00364 Biotin-requiring enzyme 6 76 5.8E-20 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 Gene3D G3DSA:4.10.320.10 252 295 1.1E-18 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 Pfam PF02817 e3 binding domain 251 286 5.3E-16 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 327 551 9.3E-83 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 APT56_11840 c89fd39d58caf3161bafd6c2da6ce40f 552 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 143 172 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT56_10825 d92775d76d14208d540213f98a6deee1 423 Gene3D G3DSA:3.30.70.360 219 336 8.2E-131 T 11-10-2018 APT56_10825 d92775d76d14208d540213f98a6deee1 423 SUPERFAMILY SSF55031 219 337 8.2E-22 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_10825 d92775d76d14208d540213f98a6deee1 423 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 14 417 5.0E-112 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 APT56_10825 d92775d76d14208d540213f98a6deee1 423 Pfam PF01546 Peptidase family M20/M25/M40 84 415 1.1E-28 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_10825 d92775d76d14208d540213f98a6deee1 423 SUPERFAMILY SSF53187 4 418 1.09E-85 T 11-10-2018 APT56_10825 d92775d76d14208d540213f98a6deee1 423 PIRSF PIRSF001235 11 422 1.9E-136 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 APT56_10825 d92775d76d14208d540213f98a6deee1 423 Gene3D G3DSA:3.40.630.10 30 412 8.2E-131 T 11-10-2018 APT56_23175 be672658d8b6356c0496dc3ef97629ed 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 164 2.5E-23 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_23175 be672658d8b6356c0496dc3ef97629ed 169 Gene3D G3DSA:1.10.1740.10 1 78 8.4E-13 T 11-10-2018 APT56_23175 be672658d8b6356c0496dc3ef97629ed 169 SUPERFAMILY SSF88659 90 164 2.18E-11 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_23175 be672658d8b6356c0496dc3ef97629ed 169 Pfam PF04542 Sigma-70 region 2 15 81 1.1E-17 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_23175 be672658d8b6356c0496dc3ef97629ed 169 Gene3D G3DSA:1.10.10.10 93 167 3.6E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23175 be672658d8b6356c0496dc3ef97629ed 169 Pfam PF08281 Sigma-70, region 4 111 164 5.2E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_23175 be672658d8b6356c0496dc3ef97629ed 169 SUPERFAMILY SSF88946 10 101 1.92E-19 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_15030 7648e19b32ea28b9fc6417dcfb4dddd2 227 Pfam PF11010 Protein of unknown function (DUF2848) 25 218 1.4E-79 T 11-10-2018 IPR021269 Protein of unknown function DUF2848 APT56_11775 76c209564962b95ce808dce8e3fb8650 243 Gene3D G3DSA:3.10.290.10 1 56 1.3E-15 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_11775 76c209564962b95ce808dce8e3fb8650 243 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 109 238 4.3E-36 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 APT56_11775 76c209564962b95ce808dce8e3fb8650 243 SUPERFAMILY SSF55120 65 241 9.12E-38 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_11775 76c209564962b95ce808dce8e3fb8650 243 Pfam PF01479 S4 domain 4 41 2.2E-6 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_11775 76c209564962b95ce808dce8e3fb8650 243 SMART SM00363 4 61 3.7E-4 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_11775 76c209564962b95ce808dce8e3fb8650 243 Pfam PF00849 RNA pseudouridylate synthase 66 207 2.2E-10 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_11775 76c209564962b95ce808dce8e3fb8650 243 SUPERFAMILY SSF55174 3 84 9.55E-13 T 11-10-2018 APT56_11775 76c209564962b95ce808dce8e3fb8650 243 Gene3D G3DSA:3.30.2350.10 60 242 2.7E-45 T 11-10-2018 APT56_04955 782e7d2167249c08aa7dc55880afbfa4 394 SUPERFAMILY SSF111369 55 264 1.2E-19 T 11-10-2018 APT56_04955 782e7d2167249c08aa7dc55880afbfa4 394 Gene3D G3DSA:1.10.287.470 96 187 1.2E-85 T 11-10-2018 APT56_04955 782e7d2167249c08aa7dc55880afbfa4 394 Gene3D G3DSA:2.40.50.100 62 224 1.2E-85 T 11-10-2018 APT56_04955 782e7d2167249c08aa7dc55880afbfa4 394 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 268 1.4E-11 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_04955 782e7d2167249c08aa7dc55880afbfa4 394 Gene3D G3DSA:2.40.420.20 46 381 1.2E-85 T 11-10-2018 APT56_04955 782e7d2167249c08aa7dc55880afbfa4 394 Gene3D G3DSA:2.40.30.170 51 320 1.2E-85 T 11-10-2018 APT56_04955 782e7d2167249c08aa7dc55880afbfa4 394 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 383 2.2E-44 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Gene3D G3DSA:2.30.30.40 470 597 8.8E-26 T 11-10-2018 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 SUPERFAMILY SSF50341 469 601 5.23E-23 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Gene3D G3DSA:3.30.565.10 281 469 1.2E-49 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 SMART SM00073 8 105 5.3E-13 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 SMART SM00387 327 470 5.3E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Pfam PF00072 Response regulator receiver domain 631 743 5.0E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Gene3D G3DSA:2.40.50.180 493 556 8.8E-26 T 11-10-2018 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 386 3.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 448 3.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 467 3.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 SUPERFAMILY SSF52172 628 749 2.7E-32 T 11-10-2018 IPR011006 CheY-like superfamily APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Pfam PF01584 CheW-like domain 476 603 3.3E-16 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Gene3D G3DSA:1.20.120.160 3 128 1.1E-23 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 SMART SM00260 462 601 3.3E-7 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Pfam PF01627 Hpt domain 11 102 3.5E-14 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Gene3D G3DSA:3.40.50.12740 628 752 1.7E-35 T 11-10-2018 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 SUPERFAMILY SSF47226 8 104 6.54E-23 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 SMART SM00448 629 743 1.6E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 469 4.2E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_16465 4c6026ce153794ac8689a647a6ea29b3 752 SUPERFAMILY SSF55874 286 468 2.36E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_07715 ccedcb0ad3b7c8b4b29b4b78293a9ebc 290 Gene3D G3DSA:1.10.3730.20 34 143 2.1E-7 T 11-10-2018 APT56_07715 ccedcb0ad3b7c8b4b29b4b78293a9ebc 290 SUPERFAMILY SSF103481 209 287 3.01E-9 T 11-10-2018 APT56_07715 ccedcb0ad3b7c8b4b29b4b78293a9ebc 290 Pfam PF00892 EamA-like transporter family 153 287 3.0E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_07715 ccedcb0ad3b7c8b4b29b4b78293a9ebc 290 SUPERFAMILY SSF103481 39 141 7.98E-13 T 11-10-2018 APT56_19975 58d8d2879dd871f579efef5f697de54b 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 128 159 1.3E-4 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_19975 58d8d2879dd871f579efef5f697de54b 186 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 136 164 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT56_19975 58d8d2879dd871f579efef5f697de54b 186 Gene3D G3DSA:2.160.10.10 31 183 1.0E-29 T 11-10-2018 APT56_19975 58d8d2879dd871f579efef5f697de54b 186 SUPERFAMILY SSF51161 25 181 3.05E-36 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_07785 2cdd9acbb3ea48711924491a699de6c0 262 SUPERFAMILY SSF52096 1 261 3.61E-77 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_07785 2cdd9acbb3ea48711924491a699de6c0 262 Gene3D G3DSA:3.90.226.10 1 203 4.3E-66 T 11-10-2018 APT56_07785 2cdd9acbb3ea48711924491a699de6c0 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 262 4.9E-60 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_07785 2cdd9acbb3ea48711924491a699de6c0 262 Gene3D G3DSA:1.10.12.10 205 262 2.1E-23 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_07785 2cdd9acbb3ea48711924491a699de6c0 262 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 7 262 2.4E-135 T 11-10-2018 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 Gene3D G3DSA:3.40.50.1860 6 254 1.4E-77 T 11-10-2018 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 71 79 - T 11-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 SUPERFAMILY SSF53681 6 108 2.29E-31 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 TIGRFAM TIGR00067 glut_race: glutamate racemase 7 229 2.3E-57 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 SUPERFAMILY SSF53681 110 259 2.45E-29 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 181 191 - T 11-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 215 1.4E-31 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 Hamap MF_00258 Glutamate racemase [murI]. 5 256 33.499 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_22960 ce2b340640fd0ac67461705317634cb0 267 Gene3D G3DSA:3.40.50.1860 97 208 1.4E-77 T 11-10-2018 APT56_12175 99467a316eb205b65887eef3f2062abe 410 Gene3D G3DSA:3.40.50.10540 14 399 9.2E-119 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_12175 99467a316eb205b65887eef3f2062abe 410 SUPERFAMILY SSF89796 11 404 5.1E-124 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_12175 99467a316eb205b65887eef3f2062abe 410 Gene3D G3DSA:3.30.1540.10 241 333 9.2E-119 T 11-10-2018 APT56_12175 99467a316eb205b65887eef3f2062abe 410 Pfam PF02515 CoA-transferase family III 15 382 1.8E-110 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_27030 02bfc5443ab09e67de229c70749ff6f6 367 Gene3D G3DSA:1.10.3090.10 131 278 1.5E-26 T 11-10-2018 APT56_27030 02bfc5443ab09e67de229c70749ff6f6 367 Pfam PF01743 Poly A polymerase head domain 12 130 1.1E-16 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APT56_27030 02bfc5443ab09e67de229c70749ff6f6 367 Gene3D G3DSA:3.30.460.10 1 130 9.5E-29 T 11-10-2018 APT56_27030 02bfc5443ab09e67de229c70749ff6f6 367 PIRSF PIRSF000813 246 367 1.8E-12 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 APT56_27030 02bfc5443ab09e67de229c70749ff6f6 367 PIRSF PIRSF000813 10 248 1.3E-112 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 APT56_27030 02bfc5443ab09e67de229c70749ff6f6 367 SUPERFAMILY SSF81891 130 314 1.57E-31 T 11-10-2018 APT56_27030 02bfc5443ab09e67de229c70749ff6f6 367 SUPERFAMILY SSF81301 6 128 4.03E-30 T 11-10-2018 APT56_27030 02bfc5443ab09e67de229c70749ff6f6 367 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 156 217 2.1E-8 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APT56_10575 725fba649e76110425db4f9a94f3739e 400 SUPERFAMILY SSF53901 206 398 3.02E-41 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_10575 725fba649e76110425db4f9a94f3739e 400 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 93 232 1.1E-18 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal APT56_10575 725fba649e76110425db4f9a94f3739e 400 Gene3D G3DSA:3.40.47.10 9 243 1.9E-28 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_10575 725fba649e76110425db4f9a94f3739e 400 SUPERFAMILY SSF53901 10 234 4.94E-30 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_10575 725fba649e76110425db4f9a94f3739e 400 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 242 335 5.1E-22 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal APT56_10575 725fba649e76110425db4f9a94f3739e 400 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 150 166 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site APT56_10575 725fba649e76110425db4f9a94f3739e 400 Gene3D G3DSA:3.40.47.10 245 395 6.1E-37 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_10575 725fba649e76110425db4f9a94f3739e 400 SMART SM00825 Beta-ketoacyl synthase 10 400 4.3E-7 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APT56_22595 b43a55b0381eba2be91245873596e7c8 397 SUPERFAMILY SSF53748 15 394 6.01E-140 T 11-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 Gene3D G3DSA:3.40.50.1260 16 392 2.5E-144 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 Pfam PF00162 Phosphoglycerate kinase 16 384 1.7E-137 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PIRSF PIRSF000724 1 397 4.0E-134 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 15 31 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 169 191 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 192 211 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 370 387 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 37 59 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 347 358 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 110 125 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 314 339 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 PRINTS PR00477 Phosphoglycerate kinase family signature 138 160 2.3E-80 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 20 30 - T 11-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 Gene3D G3DSA:3.40.50.1260 171 384 2.5E-144 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_22595 b43a55b0381eba2be91245873596e7c8 397 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 6 394 39.425 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_24175 6e1eda9b20f3584f02507bbfdb0bc734 115 Pfam PF04342 Putative member of DMT superfamily (DUF486) 8 110 3.8E-46 T 11-10-2018 IPR007437 Protein of unknown function DUF486 APT56_24175 6e1eda9b20f3584f02507bbfdb0bc734 115 PIRSF PIRSF021239 1 113 1.6E-49 T 11-10-2018 IPR007437 Protein of unknown function DUF486 APT56_26555 9620f9f580ae90f034dac3a1afc358ed 322 Gene3D G3DSA:3.40.190.10 124 247 1.6E-107 T 11-10-2018 APT56_26555 9620f9f580ae90f034dac3a1afc358ed 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 318 7.3E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_26555 9620f9f580ae90f034dac3a1afc358ed 322 PIRSF PIRSF017082 1 321 5.6E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_26555 9620f9f580ae90f034dac3a1afc358ed 322 Gene3D G3DSA:3.40.190.150 27 312 1.6E-107 T 11-10-2018 APT56_26555 9620f9f580ae90f034dac3a1afc358ed 322 SUPERFAMILY SSF53850 113 282 7.1E-16 T 11-10-2018 APT56_08230 eb2e4fcebb74e20ced76c45c0f905b09 229 Gene3D G3DSA:1.10.10.10 124 226 5.7E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08230 eb2e4fcebb74e20ced76c45c0f905b09 229 Gene3D G3DSA:3.40.50.2300 1 121 5.6E-38 T 11-10-2018 APT56_08230 eb2e4fcebb74e20ced76c45c0f905b09 229 SUPERFAMILY SSF46894 120 219 5.39E-25 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_08230 eb2e4fcebb74e20ced76c45c0f905b09 229 SMART SM00862 145 218 7.5E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_08230 eb2e4fcebb74e20ced76c45c0f905b09 229 SUPERFAMILY SSF52172 1 120 3.98E-36 T 11-10-2018 IPR011006 CheY-like superfamily APT56_08230 eb2e4fcebb74e20ced76c45c0f905b09 229 SMART SM00448 1 112 2.2E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_08230 eb2e4fcebb74e20ced76c45c0f905b09 229 Pfam PF00072 Response regulator receiver domain 3 112 8.2E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_08230 eb2e4fcebb74e20ced76c45c0f905b09 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 6.4E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_19540 d1b0ebba0e31c4e5c298b9964605d3d7 347 Gene3D G3DSA:3.40.50.1820 46 347 2.3E-81 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_19540 d1b0ebba0e31c4e5c298b9964605d3d7 347 PRINTS PR00412 Epoxide hydrolase signature 322 344 7.8E-13 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_19540 d1b0ebba0e31c4e5c298b9964605d3d7 347 PRINTS PR00412 Epoxide hydrolase signature 163 176 7.8E-13 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_19540 d1b0ebba0e31c4e5c298b9964605d3d7 347 PRINTS PR00412 Epoxide hydrolase signature 101 116 7.8E-13 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_19540 d1b0ebba0e31c4e5c298b9964605d3d7 347 PRINTS PR00412 Epoxide hydrolase signature 149 162 7.8E-13 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_19540 d1b0ebba0e31c4e5c298b9964605d3d7 347 PRINTS PR00412 Epoxide hydrolase signature 81 99 7.8E-13 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_19540 d1b0ebba0e31c4e5c298b9964605d3d7 347 Pfam PF00561 alpha/beta hydrolase fold 78 207 8.5E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_19540 d1b0ebba0e31c4e5c298b9964605d3d7 347 SUPERFAMILY SSF53474 55 343 6.87E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_06850 599ec04cd09de2e2c51472edc9f30afb 195 SUPERFAMILY SSF50249 10 82 2.23E-11 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_06850 599ec04cd09de2e2c51472edc9f30afb 195 Pfam PF02565 Recombination protein O C terminal 87 151 9.0E-16 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APT56_06850 599ec04cd09de2e2c51472edc9f30afb 195 Gene3D G3DSA:2.40.50.140 9 83 2.2E-27 T 11-10-2018 APT56_06850 599ec04cd09de2e2c51472edc9f30afb 195 SUPERFAMILY SSF57863 90 148 1.96E-7 T 11-10-2018 IPR037278 ARFGAP/RecO-like zinc finger APT56_06850 599ec04cd09de2e2c51472edc9f30afb 195 Gene3D G3DSA:1.20.1440.120 85 165 1.6E-23 T 11-10-2018 APT56_06850 599ec04cd09de2e2c51472edc9f30afb 195 Pfam PF11967 Recombination protein O N terminal 11 81 1.7E-18 T 11-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal APT56_06850 599ec04cd09de2e2c51472edc9f30afb 195 Hamap MF_00201 DNA repair protein RecO [recO]. 7 192 13.805 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APT56_06850 599ec04cd09de2e2c51472edc9f30afb 195 TIGRFAM TIGR00613 reco: DNA repair protein RecO 15 152 1.8E-18 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APT56_03545 9fe34bdb6d8b30b313331b63cd9f39f3 189 SUPERFAMILY SSF52499 2 186 4.06E-33 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_03545 9fe34bdb6d8b30b313331b63cd9f39f3 189 Pfam PF00857 Isochorismatase family 4 149 3.1E-25 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_03545 9fe34bdb6d8b30b313331b63cd9f39f3 189 Gene3D G3DSA:3.40.50.850 1 189 8.4E-35 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_02285 a05017bab8268ec72a97216da34a1915 478 Pfam PF01546 Peptidase family M20/M25/M40 96 457 4.2E-21 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_02285 a05017bab8268ec72a97216da34a1915 478 SUPERFAMILY SSF53187 24 462 9.28E-47 T 11-10-2018 APT56_02285 a05017bab8268ec72a97216da34a1915 478 Gene3D G3DSA:3.30.70.360 212 375 3.5E-84 T 11-10-2018 APT56_02285 a05017bab8268ec72a97216da34a1915 478 Pfam PF07687 Peptidase dimerisation domain 211 360 2.9E-9 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_02285 a05017bab8268ec72a97216da34a1915 478 Gene3D G3DSA:3.40.630.10 56 442 3.5E-84 T 11-10-2018 APT56_27340 22293f42a0237dbd43b14164adebad96 345 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 4 342 1.2E-122 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APT56_27340 22293f42a0237dbd43b14164adebad96 345 SUPERFAMILY SSF51735 1 343 3.71E-89 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_27340 22293f42a0237dbd43b14164adebad96 345 Gene3D G3DSA:3.90.25.10 200 336 3.6E-134 T 11-10-2018 APT56_27340 22293f42a0237dbd43b14164adebad96 345 Gene3D G3DSA:3.40.50.720 5 281 3.6E-134 T 11-10-2018 APT56_27340 22293f42a0237dbd43b14164adebad96 345 PRINTS PR01713 Nucleotide sugar epimerase signature 263 278 1.8E-5 T 11-10-2018 APT56_27340 22293f42a0237dbd43b14164adebad96 345 PRINTS PR01713 Nucleotide sugar epimerase signature 302 319 1.8E-5 T 11-10-2018 APT56_27340 22293f42a0237dbd43b14164adebad96 345 PRINTS PR01713 Nucleotide sugar epimerase signature 237 252 1.8E-5 T 11-10-2018 APT56_27340 22293f42a0237dbd43b14164adebad96 345 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 329 7.4E-54 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_21660 3a3e28a59f977b7725088f04e310a9a9 174 Gene3D G3DSA:3.30.420.10 4 169 2.9E-41 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_21660 3a3e28a59f977b7725088f04e310a9a9 174 SMART SM00479 7 173 5.5E-34 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APT56_21660 3a3e28a59f977b7725088f04e310a9a9 174 Pfam PF00929 Exonuclease 9 163 2.5E-22 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APT56_21660 3a3e28a59f977b7725088f04e310a9a9 174 SUPERFAMILY SSF53098 6 170 1.42E-41 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_24750 8349a30b2a3abfa9a249912f9e04490c 468 Pfam PF01425 Amidase 25 446 5.6E-80 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_24750 8349a30b2a3abfa9a249912f9e04490c 468 SUPERFAMILY SSF75304 3 455 1.02E-116 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_24750 8349a30b2a3abfa9a249912f9e04490c 468 Gene3D G3DSA:3.90.1300.10 1 465 7.4E-120 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 SUPERFAMILY SSF48008 95 226 7.06E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 3.2E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.7E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.7E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 SUPERFAMILY SSF46785 10 79 1.72E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 Gene3D G3DSA:1.20.120.530 95 230 1.2E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 SMART SM00345 16 75 2.7E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 SMART SM00895 96 219 4.4E-24 T 11-10-2018 IPR011711 GntR, C-terminal APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 Gene3D G3DSA:1.10.10.10 7 81 5.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_09940 d139443706e315b1a1200cad7a5e5ea1 239 Pfam PF07729 FCD domain 96 217 2.3E-26 T 11-10-2018 IPR011711 GntR, C-terminal APT56_02305 40dccf70052d673641ab6107ff30bea1 289 SUPERFAMILY SSF53613 15 281 1.5E-63 T 11-10-2018 IPR029056 Ribokinase-like APT56_02305 40dccf70052d673641ab6107ff30bea1 289 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 23 277 6.1E-56 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 APT56_02305 40dccf70052d673641ab6107ff30bea1 289 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 222 232 - T 11-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site APT56_02305 40dccf70052d673641ab6107ff30bea1 289 Gene3D G3DSA:3.40.1190.20 9 283 1.5E-75 T 11-10-2018 IPR029056 Ribokinase-like APT56_02305 40dccf70052d673641ab6107ff30bea1 289 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 13 284 21.249 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 APT56_02305 40dccf70052d673641ab6107ff30bea1 289 Pfam PF01256 Carbohydrate kinase 36 263 1.9E-48 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 SUPERFAMILY SSF52540 4 248 2.48E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 Pfam PF00005 ABC transporter 21 177 3.4E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 ProSitePatterns PS00211 ABC transporters family signature. 451 465 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 SMART SM00382 29 227 3.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 SMART SM00382 336 528 2.3E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 Gene3D G3DSA:3.40.50.300 1 286 2.2E-81 T 11-10-2018 APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 Gene3D G3DSA:3.40.50.300 306 568 1.6E-89 T 11-10-2018 APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 SUPERFAMILY SSF52540 307 550 3.59E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 Pfam PF00005 ABC transporter 328 478 2.3E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 229 261 1.3E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_01805 975136a9ba9698d5c437b373c5cd54ab 569 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 530 557 3.7E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_12395 2325a2ae56cf327c86f2c55d9a8e784c 115 Gene3D G3DSA:3.10.20.280 3 95 6.1E-30 T 11-10-2018 IPR037021 RnfH superfamily APT56_12395 2325a2ae56cf327c86f2c55d9a8e784c 115 SUPERFAMILY SSF54285 10 84 1.63E-21 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APT56_12395 2325a2ae56cf327c86f2c55d9a8e784c 115 Hamap MF_00460 Protein RnfH [rnfH]. 11 101 22.341 T 11-10-2018 IPR005346 RnfH protein APT56_12395 2325a2ae56cf327c86f2c55d9a8e784c 115 Pfam PF03658 RnfH family Ubiquitin 11 93 5.8E-29 T 11-10-2018 IPR005346 RnfH protein APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 SUPERFAMILY SSF55785 405 539 3.32E-10 T 11-10-2018 IPR035965 PAS domain superfamily APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 SUPERFAMILY SSF47384 536 611 1.35E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 SUPERFAMILY SSF55874 602 770 3.8E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 SMART SM00388 547 612 8.7E-4 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 SMART SM00387 656 768 3.0E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 Gene3D G3DSA:3.30.450.20 407 543 1.7E-11 T 11-10-2018 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 656 766 6.5E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 Gene3D G3DSA:1.10.287.130 544 614 7.4E-9 T 11-10-2018 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 Gene3D G3DSA:3.30.565.10 616 772 5.7E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 Pfam PF05226 CHASE2 domain 23 299 6.2E-52 T 11-10-2018 IPR007890 CHASE2 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 PIRSF PIRSF037347 6 771 1.5E-268 T 11-10-2018 IPR017181 Signal transduction histidine kinase, CHASE2 sensor domain-containing, predicted APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 711 721 2.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 752 765 2.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 693 707 2.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 PRINTS PR00344 Bacterial sensor protein C-terminal signature 728 746 2.8E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_27890 74fe09f5a53c405519eefc7b1233e65a 773 SMART SM01080 35 310 3.4E-76 T 11-10-2018 IPR007890 CHASE2 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 PRINTS PR00046 Major sigma-70 factor signature 34 47 1.9E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 PRINTS PR00046 Major sigma-70 factor signature 58 66 1.9E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 PRINTS PR00046 Major sigma-70 factor signature 203 218 1.9E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 PRINTS PR00046 Major sigma-70 factor signature 218 229 1.9E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 PRINTS PR00046 Major sigma-70 factor signature 186 198 1.9E-11 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 SUPERFAMILY SSF88659 80 145 1.48E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 9 234 2.1E-79 T 11-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 Gene3D G3DSA:1.10.1740.10 2 76 3.8E-28 T 11-10-2018 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 PIRSF PIRSF000770 3 250 1.2E-33 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 SUPERFAMILY SSF88946 7 79 1.19E-22 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 233 9.6E-33 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 Pfam PF04542 Sigma-70 region 2 10 79 1.7E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 Pfam PF04545 Sigma-70, region 4 182 230 6.2E-14 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 Pfam PF04539 Sigma-70 region 3 87 142 7.6E-12 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 SUPERFAMILY SSF88659 162 239 2.43E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 1 236 62.71 T 11-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 34 47 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_11880 4e71ac18a36b9240813360c89c6c063f 251 Gene3D G3DSA:1.20.140.160 78 236 7.0E-42 T 11-10-2018 APT56_01300 f9ead8797a8425a6604a1e5e786aeecb 213 Pfam PF03922 OmpW family 31 213 3.3E-51 T 11-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 APT56_01300 f9ead8797a8425a6604a1e5e786aeecb 213 SUPERFAMILY SSF56925 34 213 2.28E-27 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APT56_01300 f9ead8797a8425a6604a1e5e786aeecb 213 Gene3D G3DSA:2.40.160.20 30 213 3.4E-65 T 11-10-2018 APT56_15130 4bca41e7c5686764c3767ee351d698f1 66 Gene3D G3DSA:3.30.70.100 1 64 4.2E-22 T 11-10-2018 APT56_15130 4bca41e7c5686764c3767ee351d698f1 66 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 APT56_15130 4bca41e7c5686764c3767ee351d698f1 66 SUPERFAMILY SSF55008 2 63 7.46E-16 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 APT56_15130 4bca41e7c5686764c3767ee351d698f1 66 Pfam PF00403 Heavy-metal-associated domain 5 62 2.9E-12 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT56_15130 4bca41e7c5686764c3767ee351d698f1 66 PRINTS PR00944 Copper ion binding protein signature 2 14 3.8E-5 T 11-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 APT56_15130 4bca41e7c5686764c3767ee351d698f1 66 PRINTS PR00944 Copper ion binding protein signature 14 27 3.8E-5 T 11-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 APT56_15130 4bca41e7c5686764c3767ee351d698f1 66 PRINTS PR00944 Copper ion binding protein signature 50 63 3.8E-5 T 11-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 APT56_00090 fc859fbc6bbaa43081fddf7fd4cc545c 336 PIRSF PIRSF002825 10 335 4.4E-73 T 11-10-2018 IPR026045 Ferric binding protein APT56_00090 fc859fbc6bbaa43081fddf7fd4cc545c 336 SUPERFAMILY SSF53850 24 331 1.04E-63 T 11-10-2018 APT56_00090 fc859fbc6bbaa43081fddf7fd4cc545c 336 Gene3D G3DSA:3.40.190.10 128 316 5.9E-81 T 11-10-2018 APT56_00090 fc859fbc6bbaa43081fddf7fd4cc545c 336 Pfam PF13343 Bacterial extracellular solute-binding protein 74 298 1.6E-29 T 11-10-2018 APT56_00090 fc859fbc6bbaa43081fddf7fd4cc545c 336 Gene3D G3DSA:3.40.190.10 29 304 5.9E-81 T 11-10-2018 APT56_12965 886a2acabcec1fbba4257663fc5eb107 719 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 554 709 1.3E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12965 886a2acabcec1fbba4257663fc5eb107 719 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 196 358 4.4E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12965 886a2acabcec1fbba4257663fc5eb107 719 SUPERFAMILY SSF161098 78 349 1.38E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12965 886a2acabcec1fbba4257663fc5eb107 719 SUPERFAMILY SSF161098 512 703 2.62E-31 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12965 886a2acabcec1fbba4257663fc5eb107 719 Gene3D G3DSA:1.10.3720.10 508 717 7.6E-40 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12965 886a2acabcec1fbba4257663fc5eb107 719 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 515 609 3.4E-14 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_00555 13095926940ea451636f4c78ec9b3d73 304 Pfam PF09335 SNARE associated Golgi protein 29 152 2.4E-14 T 11-10-2018 IPR032816 SNARE associated Golgi protein APT56_00555 13095926940ea451636f4c78ec9b3d73 304 SMART SM00450 206 303 9.8E-13 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00555 13095926940ea451636f4c78ec9b3d73 304 SUPERFAMILY SSF52821 183 303 1.28E-21 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_00555 13095926940ea451636f4c78ec9b3d73 304 Pfam PF00581 Rhodanese-like domain 207 299 3.8E-11 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00555 13095926940ea451636f4c78ec9b3d73 304 Gene3D G3DSA:3.40.250.10 187 304 5.8E-17 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_12290 abe7c962163122cedf332a63dc677009 366 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 230 246 0.052 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_12290 abe7c962163122cedf332a63dc677009 366 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 289 322 0.011 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_12290 abe7c962163122cedf332a63dc677009 366 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 37 359 7.5E-106 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 APT56_12290 abe7c962163122cedf332a63dc677009 366 SUPERFAMILY SSF51161 50 346 2.14E-78 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_12290 abe7c962163122cedf332a63dc677009 366 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 252 287 1.0E-5 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_12290 abe7c962163122cedf332a63dc677009 366 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 172 205 8.3E-6 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_12290 abe7c962163122cedf332a63dc677009 366 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 135 169 1.5E-9 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_12290 abe7c962163122cedf332a63dc677009 366 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 356 36.3 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 APT56_12290 abe7c962163122cedf332a63dc677009 366 Gene3D G3DSA:2.160.10.10 125 338 2.3E-61 T 11-10-2018 APT56_12290 abe7c962163122cedf332a63dc677009 366 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 40 113 7.4E-21 T 11-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 APT56_12290 abe7c962163122cedf332a63dc677009 366 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 156 184 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT56_12290 abe7c962163122cedf332a63dc677009 366 Gene3D G3DSA:3.40.1390.10 28 122 1.2E-21 T 11-10-2018 APT56_09490 0f453af159ee5a27d339212b544b7d9e 429 Gene3D G3DSA:3.50.50.60 33 386 8.0E-77 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_09490 0f453af159ee5a27d339212b544b7d9e 429 SUPERFAMILY SSF51905 32 414 1.58E-51 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_09490 0f453af159ee5a27d339212b544b7d9e 429 Gene3D G3DSA:3.30.9.10 126 348 8.0E-77 T 11-10-2018 APT56_09490 0f453af159ee5a27d339212b544b7d9e 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 383 398 5.2E-7 T 11-10-2018 APT56_09490 0f453af159ee5a27d339212b544b7d9e 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 33 55 5.2E-7 T 11-10-2018 APT56_09490 0f453af159ee5a27d339212b544b7d9e 429 Pfam PF01266 FAD dependent oxidoreductase 33 385 1.7E-58 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 Gene3D G3DSA:3.40.190.10 108 297 8.9E-39 T 11-10-2018 APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 Gene3D G3DSA:1.10.10.10 13 101 2.3E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 2.8E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 Gene3D G3DSA:3.40.190.10 178 280 8.9E-39 T 11-10-2018 APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 SUPERFAMILY SSF46785 13 123 5.65E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 Pfam PF03466 LysR substrate binding domain 102 306 2.2E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 1.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 1.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 1.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21035 310a2eda0d2b2cda6fc2e035dd532f4b 308 SUPERFAMILY SSF53850 102 306 2.95E-38 T 11-10-2018 APT56_04960 2ddd9c4e78b9318da6124e508ecca8c5 652 SUPERFAMILY SSF52540 5 227 4.63E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04960 2ddd9c4e78b9318da6124e508ecca8c5 652 Pfam PF00005 ABC transporter 25 173 4.4E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04960 2ddd9c4e78b9318da6124e508ecca8c5 652 Gene3D G3DSA:3.40.50.300 3 272 7.1E-70 T 11-10-2018 APT56_04960 2ddd9c4e78b9318da6124e508ecca8c5 652 Pfam PF12704 MacB-like periplasmic core domain 275 494 3.9E-40 T 11-10-2018 IPR025857 MacB-like periplasmic core domain APT56_04960 2ddd9c4e78b9318da6124e508ecca8c5 652 Pfam PF02687 FtsX-like permease family 556 645 1.7E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APT56_04960 2ddd9c4e78b9318da6124e508ecca8c5 652 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_04960 2ddd9c4e78b9318da6124e508ecca8c5 652 SMART SM00382 34 221 7.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15910 026ad219ef9c38f04778b8880746b81c 168 Pfam PF04463 Protein of unknown function (DUF523) 4 150 3.2E-42 T 11-10-2018 IPR007553 Domain of unknown function DUF523 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 Pfam PF00330 Aconitase family (aconitate hydratase) 70 533 3.8E-149 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 SUPERFAMILY SSF53732 22 587 5.89E-189 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 Gene3D G3DSA:3.30.499.20 6 360 4.6E-133 T 11-10-2018 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 860 0.0 T 11-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 Gene3D G3DSA:1.10.1440.20 562 619 3.7E-9 T 11-10-2018 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 162 170 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 191 204 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 402 413 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 267 280 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 360 374 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 464 477 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 138 151 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 205 220 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 PRINTS PR00415 Aconitase family signature 281 294 4.0E-30 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 SUPERFAMILY SSF52016 599 858 4.71E-68 T 11-10-2018 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 Gene3D G3DSA:3.30.499.10 361 561 7.4E-75 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 Pfam PF00694 Aconitase C-terminal domain 657 788 1.5E-29 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 APT56_25120 e4f570551f5c2d3f6e00a642bba5a6b8 872 Gene3D G3DSA:3.20.19.10 620 859 4.5E-84 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 APT56_21425 761476737d36991374d7dd2f9015ecde 421 Gene3D G3DSA:3.40.50.150 115 392 2.3E-94 T 11-10-2018 APT56_21425 761476737d36991374d7dd2f9015ecde 421 Pfam PF02353 Mycolic acid cyclopropane synthetase 107 384 6.0E-94 T 11-10-2018 APT56_21425 761476737d36991374d7dd2f9015ecde 421 PIRSF PIRSF003085 1 413 1.4E-130 T 11-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 APT56_21425 761476737d36991374d7dd2f9015ecde 421 SUPERFAMILY SSF53335 118 389 3.87E-74 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_10540 fdb1225ae685431c429adcaa9404de42 141 SUPERFAMILY SSF54637 11 137 9.14E-33 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_10540 fdb1225ae685431c429adcaa9404de42 141 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 19 131 2.8E-16 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 APT56_10540 fdb1225ae685431c429adcaa9404de42 141 Pfam PF03061 Thioesterase superfamily 50 125 2.5E-15 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_10540 fdb1225ae685431c429adcaa9404de42 141 Gene3D G3DSA:3.10.129.10 8 141 6.4E-48 T 11-10-2018 APT56_09735 525418dc9549eb28292cd320920192c0 655 SMART SM00052 419 652 6.1E-7 T 11-10-2018 IPR001633 EAL domain APT56_09735 525418dc9549eb28292cd320920192c0 655 Gene3D G3DSA:3.20.20.450 417 655 3.5E-29 T 11-10-2018 IPR035919 EAL domain superfamily APT56_09735 525418dc9549eb28292cd320920192c0 655 SUPERFAMILY SSF55073 242 406 4.0E-12 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_09735 525418dc9549eb28292cd320920192c0 655 Pfam PF16448 LapD/MoxY periplasmic domain 24 145 3.3E-39 T 11-10-2018 IPR032244 LapD/MoxY, periplasmic domain APT56_09735 525418dc9549eb28292cd320920192c0 655 Pfam PF00990 Diguanylate cyclase, GGDEF domain 237 364 3.6E-10 T 11-10-2018 IPR000160 GGDEF domain APT56_09735 525418dc9549eb28292cd320920192c0 655 SUPERFAMILY SSF141868 425 654 1.7E-24 T 11-10-2018 IPR035919 EAL domain superfamily APT56_09735 525418dc9549eb28292cd320920192c0 655 Gene3D G3DSA:3.30.1040.50 101 151 6.5E-14 T 11-10-2018 APT56_09735 525418dc9549eb28292cd320920192c0 655 SMART SM00267 225 407 2.1E-7 T 11-10-2018 IPR000160 GGDEF domain APT56_09735 525418dc9549eb28292cd320920192c0 655 Gene3D G3DSA:3.30.70.270 219 407 1.2E-20 T 11-10-2018 APT56_09735 525418dc9549eb28292cd320920192c0 655 Pfam PF00563 EAL domain 426 648 7.9E-23 T 11-10-2018 IPR001633 EAL domain APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 Gene3D G3DSA:3.40.1110.10 451 571 7.8E-95 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 639 655 4.7E-7 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 492 510 4.7E-7 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 670 695 4.7E-7 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 SUPERFAMILY SSF81665 191 728 6.28E-14 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 Gene3D G3DSA:2.70.150.20 231 343 6.3E-42 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 Gene3D G3DSA:3.30.70.100 8 85 3.6E-24 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 Pfam PF00122 E1-E2 ATPase 239 419 8.7E-61 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 SUPERFAMILY SSF55008 5 78 2.23E-23 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 210 717 2.8E-92 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 Gene3D G3DSA:3.40.50.1000 421 691 7.8E-95 T 11-10-2018 IPR023214 HAD superfamily APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 153 749 5.6E-178 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 171 748 6.0E-189 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 ProSitePatterns PS01047 Heavy-metal-associated domain. 14 43 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 SUPERFAMILY SSF81653 240 338 1.96E-31 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 Pfam PF00403 Heavy-metal-associated domain 12 72 3.4E-16 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 Pfam PF00702 haloacid dehalogenase-like hydrolase 437 653 2.9E-46 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 442 448 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 586 596 3.4E-28 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 639 658 3.4E-28 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 288 302 3.4E-28 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 440 454 3.4E-28 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 564 575 3.4E-28 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 662 674 3.4E-28 T 11-10-2018 APT56_15135 4ed55ae0e30d8cbdd9c457d4c68d9958 768 SUPERFAMILY SSF56784 438 746 1.37E-60 T 11-10-2018 IPR036412 HAD-like superfamily APT56_14755 4db723dc217a835134111fd02b3a45ba 325 SUPERFAMILY SSF53850 110 280 9.5E-15 T 11-10-2018 APT56_14755 4db723dc217a835134111fd02b3a45ba 325 Gene3D G3DSA:3.40.190.10 129 250 1.2E-104 T 11-10-2018 APT56_14755 4db723dc217a835134111fd02b3a45ba 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 322 2.3E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_14755 4db723dc217a835134111fd02b3a45ba 325 Gene3D G3DSA:3.40.190.150 31 315 1.2E-104 T 11-10-2018 APT56_14755 4db723dc217a835134111fd02b3a45ba 325 PIRSF PIRSF017082 1 324 1.3E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00300 19552a7817898884ec265cd482010325 307 SUPERFAMILY SSF46785 5 115 1.7E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00300 19552a7817898884ec265cd482010325 307 Gene3D G3DSA:3.40.190.290 94 296 2.5E-61 T 11-10-2018 APT56_00300 19552a7817898884ec265cd482010325 307 SUPERFAMILY SSF53850 93 300 3.62E-45 T 11-10-2018 APT56_00300 19552a7817898884ec265cd482010325 307 Gene3D G3DSA:1.10.10.10 6 92 2.6E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00300 19552a7817898884ec265cd482010325 307 Pfam PF03466 LysR substrate binding domain 92 296 2.8E-43 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_00300 19552a7817898884ec265cd482010325 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 65 2.4E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00300 19552a7817898884ec265cd482010325 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00300 19552a7817898884ec265cd482010325 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00300 19552a7817898884ec265cd482010325 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13325 58ca950fc2b7a93c9eb9f6e968ee15fc 274 ProSitePatterns PS00194 Thioredoxin family active site. 162 180 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APT56_13325 58ca950fc2b7a93c9eb9f6e968ee15fc 274 SUPERFAMILY SSF52833 141 267 4.46E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_13325 58ca950fc2b7a93c9eb9f6e968ee15fc 274 Pfam PF08534 Redoxin 142 256 1.2E-14 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APT56_13325 58ca950fc2b7a93c9eb9f6e968ee15fc 274 Gene3D G3DSA:3.40.30.10 130 269 3.3E-31 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 206 219 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 326 342 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 768 780 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 256 274 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 14 24 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 230 252 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 374 388 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 784 800 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 191 206 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 484 493 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR01159 DNA gyrase subunit B signature 388 408 1.8E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Gene3D G3DSA:3.40.50.670 703 813 1.1E-26 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 SMART SM00433 44 808 6.3E-259 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 SUPERFAMILY SSF54211 231 406 6.45E-56 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Pfam PF01751 Toprim domain 433 544 3.0E-17 T 11-10-2018 IPR006171 TOPRIM domain APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Gene3D G3DSA:3.30.230.10 231 406 7.6E-70 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 SUPERFAMILY SSF55874 14 226 2.36E-68 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 14 815 3.2E-294 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 SMART SM00387 40 186 4.3E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Gene3D G3DSA:3.40.50.670 412 582 1.3E-72 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Gene3D G3DSA:3.30.565.10 11 230 2.7E-91 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 744 804 1.7E-29 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 11 815 98.986 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 ProSitePatterns PS00177 DNA topoisomerase II signature. 436 444 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 41 182 1.8E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 434 448 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 538 550 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 282 295 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 44 59 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 518 535 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 124 138 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 500 516 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 747 763 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 PRINTS PR00418 DNA topoisomerase II family signature 79 92 6.1E-68 T 11-10-2018 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 Pfam PF00204 DNA gyrase B 231 404 2.0E-57 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_00295 e235ead152e7721fd0ec3db8b6d9e1c9 815 SUPERFAMILY SSF56719 408 806 2.88E-84 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT56_11960 8e8c166fd47f088c6f6a5609bab7ac75 983 Gene3D G3DSA:1.20.120.1380 341 557 8.7E-51 T 11-10-2018 APT56_11960 8e8c166fd47f088c6f6a5609bab7ac75 983 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 212 461 3.0E-59 T 11-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 APT56_11960 8e8c166fd47f088c6f6a5609bab7ac75 983 Gene3D G3DSA:3.40.50.300 368 556 8.7E-51 T 11-10-2018 APT56_11960 8e8c166fd47f088c6f6a5609bab7ac75 983 SMART SM00962 373 568 9.5E-60 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_11960 8e8c166fd47f088c6f6a5609bab7ac75 983 SMART SM00382 372 545 2.7E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11960 8e8c166fd47f088c6f6a5609bab7ac75 983 Pfam PF00448 SRP54-type protein, GTPase domain 375 566 4.1E-36 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APT56_11960 8e8c166fd47f088c6f6a5609bab7ac75 983 SUPERFAMILY SSF52540 373 566 1.05E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27120 c0c36708928e8f8e43ef2ee3a3779b40 207 Pfam PF01613 Flavin reductase like domain 22 161 8.2E-21 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_27120 c0c36708928e8f8e43ef2ee3a3779b40 207 SMART SM00903 19 171 5.5E-23 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_27120 c0c36708928e8f8e43ef2ee3a3779b40 207 Gene3D G3DSA:2.30.110.10 1 202 5.3E-64 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_27120 c0c36708928e8f8e43ef2ee3a3779b40 207 SUPERFAMILY SSF50475 1 192 8.34E-45 T 11-10-2018 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 SMART SM00889 485 604 8.5E-77 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Pfam PF00009 Elongation factor Tu GTP binding domain 10 288 1.6E-67 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 SMART SM00838 606 695 6.0E-54 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 SUPERFAMILY SSF52540 6 288 5.47E-106 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Gene3D G3DSA:3.30.230.10 489 695 4.0E-92 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 SUPERFAMILY SSF54980 409 486 1.8E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Gene3D G3DSA:3.40.50.300 1 298 1.4E-114 T 11-10-2018 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 SUPERFAMILY SSF54980 609 697 5.76E-31 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Pfam PF14492 Elongation Factor G, domain II 409 483 8.6E-35 T 11-10-2018 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Hamap MF_00054_B Elongation factor G [fusA]. 6 699 111.899 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 187 2.2E-33 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Gene3D G3DSA:3.30.70.240 610 682 4.0E-92 T 11-10-2018 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Pfam PF00679 Elongation factor G C-terminus 606 694 5.8E-32 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 PRINTS PR00315 GTP-binding elongation factor signature 85 95 4.2E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 PRINTS PR00315 GTP-binding elongation factor signature 137 146 4.2E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.2E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.2E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 PRINTS PR00315 GTP-binding elongation factor signature 101 112 4.2E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 699 0.0 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Pfam PF03764 Elongation factor G, domain IV 484 603 5.9E-49 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Gene3D G3DSA:3.30.70.870 410 488 1.6E-33 T 11-10-2018 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Gene3D G3DSA:2.40.30.10 299 405 4.1E-45 T 11-10-2018 APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 SUPERFAMILY SSF54211 484 605 6.83E-45 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 SUPERFAMILY SSF50447 255 407 3.3E-35 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_04055 8047cf0e975fde8859d0cb2c9f853a41 703 Pfam PF03144 Elongation factor Tu domain 2 329 396 3.2E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT56_08305 ce7a57b409f21e07e6fde845286e8c0b 176 SUPERFAMILY SSF50324 3 175 2.35E-67 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APT56_08305 ce7a57b409f21e07e6fde845286e8c0b 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.362 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APT56_08305 ce7a57b409f21e07e6fde845286e8c0b 176 Pfam PF00719 Inorganic pyrophosphatase 18 174 5.8E-54 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APT56_08305 ce7a57b409f21e07e6fde845286e8c0b 176 Gene3D G3DSA:3.90.80.10 1 175 2.6E-69 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 187 7.5E-35 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 SUPERFAMILY SSF88946 3 104 9.42E-33 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 191 5.3E-95 T 11-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 Gene3D G3DSA:1.10.1740.10 1 122 2.2E-40 T 11-10-2018 APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 Pfam PF08281 Sigma-70, region 4 134 182 6.8E-18 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 Gene3D G3DSA:1.10.10.10 123 191 2.6E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 SUPERFAMILY SSF88659 125 187 1.33E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_06810 1e4b2ad393f54a301ed4b09b79d577c4 199 Pfam PF04542 Sigma-70 region 2 25 92 5.1E-19 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 SMART SM01086 774 863 3.7E-35 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_18490 9df8f999f80d4961a83137c3169362fd 868 SUPERFAMILY SSF81923 4 140 7.06E-37 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 SUPERFAMILY SSF52540 158 519 1.13E-98 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 3.6E-11 T 11-10-2018 IPR004176 Clp, N-terminal APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 144 7.0E-12 T 11-10-2018 IPR004176 Clp, N-terminal APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Gene3D G3DSA:3.40.50.300 342 553 1.2E-68 T 11-10-2018 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 610 628 2.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 717 731 2.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 655 673 2.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 684 702 2.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Gene3D G3DSA:1.10.1780.10 1 147 3.1E-34 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 640 658 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 SMART SM00382 606 775 3.4E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18490 9df8f999f80d4961a83137c3169362fd 868 SMART SM00382 197 343 6.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Gene3D G3DSA:3.40.50.300 148 341 1.8E-73 T 11-10-2018 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 863 0.0 T 11-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Gene3D G3DSA:1.10.8.60 774 867 3.0E-27 T 11-10-2018 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 293 305 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Gene3D G3DSA:3.40.50.300 559 772 8.4E-87 T 11-10-2018 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 SUPERFAMILY SSF52540 555 864 1.92E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 202 334 9.4E-13 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 774 852 1.2E-24 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_18490 9df8f999f80d4961a83137c3169362fd 868 Pfam PF07724 AAA domain (Cdc48 subfamily) 605 768 1.1E-55 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_19350 7b6397222f1c4f80de717624b5297225 425 SUPERFAMILY SSF51649 135 423 6.94E-88 T 11-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT56_19350 7b6397222f1c4f80de717624b5297225 425 Gene3D G3DSA:3.30.70.150 1 135 1.6E-43 T 11-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT56_19350 7b6397222f1c4f80de717624b5297225 425 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 16 131 1.2E-5 T 11-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT56_19350 7b6397222f1c4f80de717624b5297225 425 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 141 421 1.3E-76 T 11-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT56_19350 7b6397222f1c4f80de717624b5297225 425 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 183 191 - T 11-10-2018 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT56_19350 7b6397222f1c4f80de717624b5297225 425 Gene3D G3DSA:3.20.20.110 136 425 1.5E-104 T 11-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT56_19350 7b6397222f1c4f80de717624b5297225 425 SUPERFAMILY SSF54966 4 135 6.94E-35 T 11-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 APT56_05290 7523317a79c4ef29676fac001487a628 190 SMART SM00278 73 92 3.5 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT56_05290 7523317a79c4ef29676fac001487a628 190 SMART SM00278 108 127 0.0015 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT56_05290 7523317a79c4ef29676fac001487a628 190 SUPERFAMILY SSF50249 1 63 2.28E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_05290 7523317a79c4ef29676fac001487a628 190 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 188 1.8E-50 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 APT56_05290 7523317a79c4ef29676fac001487a628 190 Gene3D G3DSA:1.10.8.10 144 188 3.4E-5 T 11-10-2018 APT56_05290 7523317a79c4ef29676fac001487a628 190 Gene3D G3DSA:2.40.50.140 1 65 3.0E-26 T 11-10-2018 APT56_05290 7523317a79c4ef29676fac001487a628 190 Pfam PF01330 RuvA N terminal domain 1 62 1.6E-20 T 11-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 APT56_05290 7523317a79c4ef29676fac001487a628 190 Pfam PF07499 RuvA, C-terminal domain 146 188 1.2E-11 T 11-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 APT56_05290 7523317a79c4ef29676fac001487a628 190 SUPERFAMILY SSF46929 145 189 5.89E-8 T 11-10-2018 IPR036267 RuvA, C-terminal domain superfamily APT56_05290 7523317a79c4ef29676fac001487a628 190 Pfam PF14520 Helix-hairpin-helix domain 72 129 1.5E-17 T 11-10-2018 APT56_05290 7523317a79c4ef29676fac001487a628 190 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 189 30.101 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 APT56_05290 7523317a79c4ef29676fac001487a628 190 SUPERFAMILY SSF47781 67 133 2.85E-19 T 11-10-2018 IPR010994 RuvA domain 2-like APT56_05290 7523317a79c4ef29676fac001487a628 190 Gene3D G3DSA:1.10.150.20 67 137 1.9E-24 T 11-10-2018 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 SUPERFAMILY SSF55021 325 396 3.09E-11 T 11-10-2018 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 SUPERFAMILY SSF52283 4 125 4.04E-38 T 11-10-2018 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 191 213 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 Gene3D G3DSA:3.30.70.260 319 399 1.9E-22 T 11-10-2018 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 Gene3D G3DSA:3.40.50.720 6 303 1.5E-104 T 11-10-2018 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 145 172 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 SUPERFAMILY SSF51735 99 286 2.01E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 285 1.2E-53 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 317 1.5E-35 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 Gene3D G3DSA:3.40.50.720 100 288 1.5E-104 T 11-10-2018 APT56_02590 98ca7e5bdf62b9e7f64b7e82b14a1dc7 399 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 220 236 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT56_02220 9b3418ba764c0b05ae3c57f7f7a2d44f 279 SUPERFAMILY SSF56235 2 271 1.78E-31 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_02220 9b3418ba764c0b05ae3c57f7f7a2d44f 279 Gene3D G3DSA:3.60.20.10 1 277 9.1E-88 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_02220 9b3418ba764c0b05ae3c57f7f7a2d44f 279 Pfam PF13230 Glutamine amidotransferases class-II 28 198 1.7E-13 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 APT56_02275 1723cfc8211774e4a715236ddc4f5e88 546 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 81 102 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site APT56_02275 1723cfc8211774e4a715236ddc4f5e88 546 Gene3D G3DSA:3.40.190.10 40 296 7.6E-120 T 11-10-2018 APT56_02275 1723cfc8211774e4a715236ddc4f5e88 546 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 460 8.4E-82 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_02275 1723cfc8211774e4a715236ddc4f5e88 546 SUPERFAMILY SSF53850 31 528 3.44E-119 T 11-10-2018 APT56_02275 1723cfc8211774e4a715236ddc4f5e88 546 PIRSF PIRSF002741 1 537 1.1E-84 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_02275 1723cfc8211774e4a715236ddc4f5e88 546 Gene3D G3DSA:3.10.105.10 297 525 7.6E-120 T 11-10-2018 APT56_02275 1723cfc8211774e4a715236ddc4f5e88 546 Gene3D G3DSA:3.90.76.10 66 186 7.6E-120 T 11-10-2018 APT56_02805 37e43fa9442dd58eaf20e90b62970761 246 Gene3D G3DSA:3.40.50.300 3 246 7.2E-79 T 11-10-2018 APT56_02805 37e43fa9442dd58eaf20e90b62970761 246 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_02805 37e43fa9442dd58eaf20e90b62970761 246 Pfam PF00005 ABC transporter 21 169 1.9E-38 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_02805 37e43fa9442dd58eaf20e90b62970761 246 SMART SM00382 30 218 6.3E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02805 37e43fa9442dd58eaf20e90b62970761 246 SUPERFAMILY SSF52540 5 240 1.0E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02805 37e43fa9442dd58eaf20e90b62970761 246 PIRSF PIRSF039085 2 246 2.6E-107 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_13475 37e43fa9442dd58eaf20e90b62970761 246 Gene3D G3DSA:3.40.50.300 3 246 7.2E-79 T 11-10-2018 APT56_13475 37e43fa9442dd58eaf20e90b62970761 246 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_13475 37e43fa9442dd58eaf20e90b62970761 246 Pfam PF00005 ABC transporter 21 169 1.9E-38 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13475 37e43fa9442dd58eaf20e90b62970761 246 SMART SM00382 30 218 6.3E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_13475 37e43fa9442dd58eaf20e90b62970761 246 SUPERFAMILY SSF52540 5 240 1.0E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_13475 37e43fa9442dd58eaf20e90b62970761 246 PIRSF PIRSF039085 2 246 2.6E-107 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_25155 43d73cb3f99b69557f1f1a65c1a63c50 404 SUPERFAMILY SSF53822 33 403 7.36E-89 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_25155 43d73cb3f99b69557f1f1a65c1a63c50 404 Pfam PF13458 Periplasmic binding protein 33 368 4.6E-89 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_25155 43d73cb3f99b69557f1f1a65c1a63c50 404 Gene3D G3DSA:3.40.50.2300 152 283 6.4E-113 T 11-10-2018 APT56_25155 43d73cb3f99b69557f1f1a65c1a63c50 404 Gene3D G3DSA:3.40.50.2300 33 333 6.4E-113 T 11-10-2018 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 608 1103 8.6E-233 T 11-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 141 252 1.3E-46 T 11-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 906 917 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 PIRSF PIRSF000197 73 1273 0.0 T 11-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 Gene3D G3DSA:1.20.5.550 86 135 7.5E-17 T 11-10-2018 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 Pfam PF00171 Aldehyde dehydrogenase family 655 1097 4.7E-118 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 SUPERFAMILY SSF51730 255 604 1.14E-120 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 SUPERFAMILY SSF53720 640 1104 1.02E-127 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 SUPERFAMILY SSF47598 4 45 8.67E-8 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 Gene3D G3DSA:3.40.309.10 881 1073 1.2E-145 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 Pfam PF01619 Proline dehydrogenase 264 561 2.1E-98 T 11-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 SUPERFAMILY SSF81935 87 253 1.44E-62 T 11-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 Gene3D G3DSA:1.10.1220.10 11 51 1.1E-15 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 Gene3D G3DSA:3.20.20.220 210 599 1.0E-151 T 11-10-2018 APT56_18165 512fff0b8b86ab1e6f15520eb2bd0004 1273 Gene3D G3DSA:3.40.605.10 642 1101 1.2E-145 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_00860 2b72112578f8346e5cbeab28d6855778 127 SUPERFAMILY SSF46955 6 121 6.96E-24 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_00860 2b72112578f8346e5cbeab28d6855778 127 Gene3D G3DSA:1.10.1660.10 1 119 6.1E-26 T 11-10-2018 APT56_00860 2b72112578f8346e5cbeab28d6855778 127 Pfam PF13411 MerR HTH family regulatory protein 7 70 8.8E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_00860 2b72112578f8346e5cbeab28d6855778 127 SMART SM00422 6 73 1.8E-17 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_13175 0edc1aaf980353dbb136e63d105f7baa 283 PIRSF PIRSF039085 13 258 8.4E-100 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_13175 0edc1aaf980353dbb136e63d105f7baa 283 SUPERFAMILY SSF52540 16 252 2.85E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_13175 0edc1aaf980353dbb136e63d105f7baa 283 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_13175 0edc1aaf980353dbb136e63d105f7baa 283 SMART SM00382 41 238 8.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_13175 0edc1aaf980353dbb136e63d105f7baa 283 Gene3D G3DSA:3.40.50.300 14 260 1.4E-75 T 11-10-2018 APT56_13175 0edc1aaf980353dbb136e63d105f7baa 283 Pfam PF00005 ABC transporter 32 182 4.0E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 2.8E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 SUPERFAMILY SSF46785 3 113 9.7E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 Gene3D G3DSA:3.40.190.290 92 297 1.7E-47 T 11-10-2018 APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 Pfam PF03466 LysR substrate binding domain 90 290 2.6E-47 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 SUPERFAMILY SSF53850 92 294 1.28E-47 T 11-10-2018 APT56_14740 87aae6acb47b337cdd05dfa33cdf34cb 304 Gene3D G3DSA:1.10.10.10 1 87 2.9E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 Pfam PF00196 Bacterial regulatory proteins, luxR family 420 474 2.1E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 Pfam PF13487 HD domain 296 358 1.2E-12 T 11-10-2018 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 SUPERFAMILY SSF109604 246 402 8.24E-11 T 11-10-2018 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 SUPERFAMILY SSF46894 411 480 8.84E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 SMART SM00421 418 475 8.6E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 Gene3D G3DSA:1.10.10.10 410 481 1.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 Gene3D G3DSA:1.10.3210.10 9 203 4.8E-9 T 11-10-2018 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 Gene3D G3DSA:1.10.3210.10 228 409 1.0E-33 T 11-10-2018 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 435 451 5.4E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 421 435 5.4E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19530 a05063ff480e1c373fce59fe2e0262e2 481 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 451 463 5.4E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_27305 809b08b909faf538a753cac5be6e437b 279 Pfam PF00005 ABC transporter 37 186 7.4E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27305 809b08b909faf538a753cac5be6e437b 279 SUPERFAMILY SSF52540 19 252 1.01E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27305 809b08b909faf538a753cac5be6e437b 279 Gene3D G3DSA:3.40.50.300 18 261 2.2E-61 T 11-10-2018 APT56_27305 809b08b909faf538a753cac5be6e437b 279 SMART SM00382 45 243 3.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_07170 fee713ddcdf71719178011f19053afec 592 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 14 591 5.6E-241 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07170 fee713ddcdf71719178011f19053afec 592 SUPERFAMILY SSF46977 456 592 5.49E-45 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07170 fee713ddcdf71719178011f19053afec 592 Gene3D G3DSA:4.10.80.40 552 592 3.8E-12 T 11-10-2018 APT56_07170 fee713ddcdf71719178011f19053afec 592 PIRSF PIRSF000171 4 579 5.4E-38 T 11-10-2018 APT56_07170 fee713ddcdf71719178011f19053afec 592 Gene3D G3DSA:3.90.700.10 251 354 1.7E-163 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07170 fee713ddcdf71719178011f19053afec 592 Gene3D G3DSA:3.50.50.60 14 419 1.7E-163 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_07170 fee713ddcdf71719178011f19053afec 592 Pfam PF00890 FAD binding domain 14 408 6.0E-118 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07170 fee713ddcdf71719178011f19053afec 592 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 48 57 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07170 fee713ddcdf71719178011f19053afec 592 SUPERFAMILY SSF51905 9 437 1.0E-78 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_07170 fee713ddcdf71719178011f19053afec 592 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 11 592 1.6E-280 T 11-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07170 fee713ddcdf71719178011f19053afec 592 Pfam PF02910 Fumarate reductase flavoprotein C-term 470 591 2.0E-39 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07170 fee713ddcdf71719178011f19053afec 592 Gene3D G3DSA:1.20.58.100 436 551 1.6E-32 T 11-10-2018 APT56_07170 fee713ddcdf71719178011f19053afec 592 SUPERFAMILY SSF56425 241 359 8.97E-43 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07170 fee713ddcdf71719178011f19053afec 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 1.1E-5 T 11-10-2018 APT56_07170 fee713ddcdf71719178011f19053afec 592 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 386 393 1.1E-5 T 11-10-2018 APT56_22650 3baf51533e9f9ff6c32a7ef2fb4e7268 514 SUPERFAMILY SSF50475 3 349 5.1E-109 T 11-10-2018 APT56_22650 3baf51533e9f9ff6c32a7ef2fb4e7268 514 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 514 72.935 T 11-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APT56_22650 3baf51533e9f9ff6c32a7ef2fb4e7268 514 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 281 1.9E-74 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APT56_22650 3baf51533e9f9ff6c32a7ef2fb4e7268 514 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 305 482 4.0E-75 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APT56_22650 3baf51533e9f9ff6c32a7ef2fb4e7268 514 SUPERFAMILY SSF143968 350 514 2.35E-66 T 11-10-2018 APT56_22650 3baf51533e9f9ff6c32a7ef2fb4e7268 514 Gene3D G3DSA:3.40.1670.10 364 481 1.3E-49 T 11-10-2018 APT56_22650 3baf51533e9f9ff6c32a7ef2fb4e7268 514 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 458 2.8E-164 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APT56_22650 3baf51533e9f9ff6c32a7ef2fb4e7268 514 Gene3D G3DSA:1.20.5.570 482 514 6.2E-16 T 11-10-2018 APT56_04305 227df93ae1ee93f64216805b30c5f7e8 365 SUPERFAMILY SSF53335 5 328 1.29E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_04305 227df93ae1ee93f64216805b30c5f7e8 365 Pfam PF01795 MraW methylase family 2 328 2.2E-99 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 APT56_04305 227df93ae1ee93f64216805b30c5f7e8 365 SUPERFAMILY SSF81799 135 234 2.88E-33 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 APT56_04305 227df93ae1ee93f64216805b30c5f7e8 365 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 43 328 1.1E-97 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 APT56_04305 227df93ae1ee93f64216805b30c5f7e8 365 Gene3D G3DSA:3.40.50.150 42 328 4.2E-96 T 11-10-2018 APT56_04305 227df93ae1ee93f64216805b30c5f7e8 365 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 329 36.237 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 APT56_04305 227df93ae1ee93f64216805b30c5f7e8 365 PIRSF PIRSF004486 1 330 5.4E-94 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 APT56_04305 227df93ae1ee93f64216805b30c5f7e8 365 Gene3D G3DSA:1.10.150.170 133 235 4.2E-96 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 APT56_19070 41597d80a60280b488e9596e41cbec4f 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 8.1E-13 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_19070 41597d80a60280b488e9596e41cbec4f 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 136 160 8.1E-13 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_19070 41597d80a60280b488e9596e41cbec4f 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 8.1E-13 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_19070 41597d80a60280b488e9596e41cbec4f 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 55 77 8.1E-13 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_19070 41597d80a60280b488e9596e41cbec4f 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 99 124 8.1E-13 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_19070 41597d80a60280b488e9596e41cbec4f 253 PIRSF PIRSF006648 4 250 1.2E-28 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_19070 41597d80a60280b488e9596e41cbec4f 253 Pfam PF01061 ABC-2 type transporter 5 216 2.8E-35 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 146 159 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 371 385 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 170 178 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 495 508 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 291 304 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 277 290 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 201 214 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 215 230 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 PRINTS PR00415 Aconitase family signature 433 444 3.3E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 Gene3D G3DSA:3.20.19.10 656 900 1.9E-104 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 Gene3D G3DSA:3.30.499.20 3 371 1.0E-158 T 11-10-2018 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 Gene3D G3DSA:1.10.1440.20 592 653 2.9E-10 T 11-10-2018 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 SUPERFAMILY SSF53732 4 618 4.84E-213 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 Gene3D G3DSA:3.30.499.10 372 591 5.3E-93 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 18 899 0.0 T 11-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 ProSitePatterns PS01244 Aconitase family signature 2. 495 508 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 Pfam PF00330 Aconitase family (aconitate hydratase) 69 564 1.8E-177 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 Pfam PF00694 Aconitase C-terminal domain 693 825 5.7E-40 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 ProSitePatterns PS00450 Aconitase family signature 1. 429 445 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_19695 ea662642172486e58c2dfd5dd38e54aa 901 SUPERFAMILY SSF52016 637 899 6.67E-83 T 11-10-2018 APT56_13050 bfa24d93344584939a913ec9197c7873 324 Gene3D G3DSA:3.40.190.150 32 314 4.0E-90 T 11-10-2018 APT56_13050 bfa24d93344584939a913ec9197c7873 324 SUPERFAMILY SSF53850 115 289 6.79E-12 T 11-10-2018 APT56_13050 bfa24d93344584939a913ec9197c7873 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 321 8.8E-58 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13050 bfa24d93344584939a913ec9197c7873 324 Gene3D G3DSA:3.40.190.10 128 250 4.0E-90 T 11-10-2018 APT56_13050 bfa24d93344584939a913ec9197c7873 324 PIRSF PIRSF017082 1 324 8.9E-102 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_03210 4eb0bd897a434f72a03f47f67aba75d1 224 Pfam PF03737 Aldolase/RraA 30 176 2.1E-43 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein APT56_03210 4eb0bd897a434f72a03f47f67aba75d1 224 SUPERFAMILY SSF89562 30 179 1.83E-42 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily APT56_03210 4eb0bd897a434f72a03f47f67aba75d1 224 Gene3D G3DSA:3.50.30.40 24 196 3.3E-49 T 11-10-2018 APT56_20025 76813794c791b53210ed17657fac0ae9 796 Gene3D G3DSA:3.40.50.720 1 194 1.3E-56 T 11-10-2018 APT56_20025 76813794c791b53210ed17657fac0ae9 796 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 190 5.8E-44 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_20025 76813794c791b53210ed17657fac0ae9 796 SUPERFAMILY SSF52096 486 792 6.33E-31 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_20025 76813794c791b53210ed17657fac0ae9 796 Gene3D G3DSA:1.10.1040.10 195 313 5.4E-16 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_20025 76813794c791b53210ed17657fac0ae9 796 SUPERFAMILY SSF48179 192 311 1.7E-20 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_20025 76813794c791b53210ed17657fac0ae9 796 SUPERFAMILY SSF48179 344 459 9.35E-16 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_20025 76813794c791b53210ed17657fac0ae9 796 Pfam PF00378 Enoyl-CoA hydratase/isomerase 499 625 1.5E-12 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_20025 76813794c791b53210ed17657fac0ae9 796 Gene3D G3DSA:3.90.226.10 480 682 6.0E-26 T 11-10-2018 APT56_20025 76813794c791b53210ed17657fac0ae9 796 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 194 293 8.0E-10 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_20025 76813794c791b53210ed17657fac0ae9 796 SUPERFAMILY SSF51735 5 192 3.49E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_00560 f42f11682faf82bcf26bfffa0204f1d4 308 SUPERFAMILY SSF48179 178 302 4.08E-28 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_00560 f42f11682faf82bcf26bfffa0204f1d4 308 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 6 305 7.8E-60 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 APT56_00560 f42f11682faf82bcf26bfffa0204f1d4 308 Pfam PF02558 Ketopantoate reductase PanE/ApbA 5 150 6.9E-34 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain APT56_00560 f42f11682faf82bcf26bfffa0204f1d4 308 Gene3D G3DSA:1.10.1040.10 178 303 2.3E-24 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_00560 f42f11682faf82bcf26bfffa0204f1d4 308 SUPERFAMILY SSF51735 1 131 1.0E-10 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_00560 f42f11682faf82bcf26bfffa0204f1d4 308 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 178 301 7.3E-25 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain APT56_00560 f42f11682faf82bcf26bfffa0204f1d4 308 Gene3D G3DSA:3.40.50.720 1 173 6.0E-48 T 11-10-2018 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 SMART SM00936 288 378 2.4E-29 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 Gene3D G3DSA:2.60.410.10 288 378 4.8E-23 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 SUPERFAMILY SSF56601 47 288 1.67E-85 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 288 378 1.1E-19 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 43 268 1.1E-81 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 SUPERFAMILY SSF69189 288 380 4.12E-22 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 Gene3D G3DSA:3.40.710.10 37 287 1.0E-93 T 11-10-2018 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 128 145 1.9E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 155 168 1.9E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_27285 73dd78b550f802ff5b9fe02fab81ba48 394 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 75 86 1.9E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_01130 cdba9273572e06ac220027146aa1b317 203 SUPERFAMILY SSF52833 1 101 9.42E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_01130 cdba9273572e06ac220027146aa1b317 203 Gene3D G3DSA:1.20.1050.10 80 187 7.6E-75 T 11-10-2018 APT56_01130 cdba9273572e06ac220027146aa1b317 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 111 188 8.8E-9 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_01130 cdba9273572e06ac220027146aa1b317 203 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 77 7.2E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_01130 cdba9273572e06ac220027146aa1b317 203 Gene3D G3DSA:3.40.30.10 2 195 7.6E-75 T 11-10-2018 APT56_01130 cdba9273572e06ac220027146aa1b317 203 SUPERFAMILY SSF47616 73 202 1.67E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_06725 0fe2a8c3851e5bd9e294a0c7837aabf4 1018 Pfam PF00575 S1 RNA binding domain 36 117 3.3E-11 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_06725 0fe2a8c3851e5bd9e294a0c7837aabf4 1018 SUPERFAMILY SSF50249 39 124 4.14E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_06725 0fe2a8c3851e5bd9e294a0c7837aabf4 1018 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 423 3.0E-157 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 APT56_06725 0fe2a8c3851e5bd9e294a0c7837aabf4 1018 SMART SM00316 37 118 7.1E-10 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_06725 0fe2a8c3851e5bd9e294a0c7837aabf4 1018 Gene3D G3DSA:2.40.50.140 31 124 9.3E-31 T 11-10-2018 APT56_06725 0fe2a8c3851e5bd9e294a0c7837aabf4 1018 Pfam PF10150 Ribonuclease E/G family 120 389 6.2E-91 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 APT56_06725 0fe2a8c3851e5bd9e294a0c7837aabf4 1018 Gene3D G3DSA:3.40.1260.20 399 506 2.6E-38 T 11-10-2018 APT56_06725 0fe2a8c3851e5bd9e294a0c7837aabf4 1018 Hamap MF_00970 Ribonuclease E [rne]. 1 1006 36.04 T 11-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 APT56_16055 878a07427aa5ec512e86e57b6f74521c 405 SUPERFAMILY SSF48452 28 134 2.06E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_16055 878a07427aa5ec512e86e57b6f74521c 405 Gene3D G3DSA:1.25.40.10 10 225 1.3E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_17500 a5bf1428a58c7d6ecf3b96ed2c1c38ac 252 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_17500 a5bf1428a58c7d6ecf3b96ed2c1c38ac 252 Pfam PF00005 ABC transporter 18 164 1.1E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17500 a5bf1428a58c7d6ecf3b96ed2c1c38ac 252 Gene3D G3DSA:3.40.50.300 1 248 9.6E-69 T 11-10-2018 APT56_17500 a5bf1428a58c7d6ecf3b96ed2c1c38ac 252 SUPERFAMILY SSF52540 2 225 2.43E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17500 a5bf1428a58c7d6ecf3b96ed2c1c38ac 252 SMART SM00382 26 213 9.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 SUPERFAMILY SSF51735 4 247 1.05E-80 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 Gene3D G3DSA:3.40.50.720 2 248 1.1E-82 T 11-10-2018 APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 246 2.7E-60 T 11-10-2018 APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 5 247 6.9E-103 T 11-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.7E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.7E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.7E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 1.9E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.9E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.9E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.9E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.9E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.9E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 185 8.1E-6 T 11-10-2018 APT56_24945 925ed2b97d2b3e42cf4a7cafb5c24446 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_23550 10a55bbbd6fb5ca58726843c7763c50f 698 SUPERFAMILY SSF141868 446 686 1.05E-60 T 11-10-2018 IPR035919 EAL domain superfamily APT56_23550 10a55bbbd6fb5ca58726843c7763c50f 698 Pfam PF02378 Phosphotransferase system, EIIC 28 329 1.5E-20 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 APT56_23550 10a55bbbd6fb5ca58726843c7763c50f 698 Gene3D G3DSA:3.20.20.450 442 695 4.9E-67 T 11-10-2018 IPR035919 EAL domain superfamily APT56_23550 10a55bbbd6fb5ca58726843c7763c50f 698 Pfam PF00563 EAL domain 446 671 2.2E-54 T 11-10-2018 IPR001633 EAL domain APT56_23550 10a55bbbd6fb5ca58726843c7763c50f 698 SMART SM00052 434 677 7.2E-60 T 11-10-2018 IPR001633 EAL domain APT56_17520 0ff90d8dbb9b7341b7b5ed73ac335bc5 673 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 656 673 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_17520 0ff90d8dbb9b7341b7b5ed73ac335bc5 673 Pfam PF00593 TonB dependent receptor 205 672 2.0E-64 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_17520 0ff90d8dbb9b7341b7b5ed73ac335bc5 673 Gene3D G3DSA:2.170.130.10 46 175 3.9E-41 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_17520 0ff90d8dbb9b7341b7b5ed73ac335bc5 673 SUPERFAMILY SSF56935 38 673 3.11E-133 T 11-10-2018 APT56_17520 0ff90d8dbb9b7341b7b5ed73ac335bc5 673 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 54 - T 11-10-2018 IPR010916 TonB box, conserved site APT56_17520 0ff90d8dbb9b7341b7b5ed73ac335bc5 673 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 170 3.0E-27 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_17520 0ff90d8dbb9b7341b7b5ed73ac335bc5 673 Gene3D G3DSA:2.40.170.20 181 673 2.7E-149 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 PIRSF PIRSF037314 1 473 1.0E-174 T 11-10-2018 IPR017171 Signal transduction histidine kinase, MctS APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 Gene3D G3DSA:3.30.450.20 38 184 2.1E-42 T 11-10-2018 APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 462 5.2E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 Pfam PF07730 Histidine kinase 251 325 7.4E-17 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 Gene3D G3DSA:3.30.565.10 344 461 1.7E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 Pfam PF17200 Single Cache domain 2 48 192 1.9E-39 T 11-10-2018 IPR033480 Single Cache domain 2 APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 SUPERFAMILY SSF55874 362 461 6.43E-16 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 SMART SM00387 368 463 5.0E-8 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_12710 91f3114ea55e673e90e21701dbb9661f 475 SMART SM01049 42 131 4.5E-33 T 11-10-2018 IPR033480 Single Cache domain 2 APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 Pfam PF00005 ABC transporter 302 449 3.4E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 SUPERFAMILY SSF52540 8 255 1.47E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 ProSitePatterns PS00211 ABC transporters family signature. 422 436 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 501 530 3.6E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 261 0.008 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 SUPERFAMILY SSF52540 276 521 2.39E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 SMART SM00382 310 499 1.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 SMART SM00382 34 233 1.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 Gene3D G3DSA:3.40.50.300 5 267 1.5E-76 T 11-10-2018 APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 Gene3D G3DSA:3.40.50.300 273 539 1.6E-81 T 11-10-2018 APT56_10960 386b68ffc2a7019d9226ddb8699d9e5b 543 Pfam PF00005 ABC transporter 26 183 2.9E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_10570 1a936899989472e19db5b40b411fc6fc 151 Gene3D G3DSA:3.10.129.10 2 139 2.6E-18 T 11-10-2018 APT56_10570 1a936899989472e19db5b40b411fc6fc 151 PIRSF PIRSF020565 1 150 2.2E-51 T 11-10-2018 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted APT56_10570 1a936899989472e19db5b40b411fc6fc 151 SUPERFAMILY SSF54637 5 140 1.92E-23 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_13605 d767181cd1dedf96c045161fb1b40088 280 SUPERFAMILY SSF161098 18 267 6.54E-57 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13605 d767181cd1dedf96c045161fb1b40088 280 Gene3D G3DSA:1.10.3720.10 16 272 7.0E-68 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13605 d767181cd1dedf96c045161fb1b40088 280 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 10 270 7.0E-104 T 11-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 APT56_13605 d767181cd1dedf96c045161fb1b40088 280 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 10 270 9.4E-94 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APT56_13605 d767181cd1dedf96c045161fb1b40088 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 274 8.1E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_11855 909289aa3b2f480fe5e964a4ff30350a 302 SUPERFAMILY SSF53850 89 299 3.26E-40 T 11-10-2018 APT56_11855 909289aa3b2f480fe5e964a4ff30350a 302 SUPERFAMILY SSF46785 3 111 1.31E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11855 909289aa3b2f480fe5e964a4ff30350a 302 Gene3D G3DSA:3.40.190.290 91 295 7.2E-61 T 11-10-2018 APT56_11855 909289aa3b2f480fe5e964a4ff30350a 302 Gene3D G3DSA:1.10.10.10 3 90 2.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11855 909289aa3b2f480fe5e964a4ff30350a 302 Pfam PF03466 LysR substrate binding domain 88 295 2.1E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11855 909289aa3b2f480fe5e964a4ff30350a 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.9E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21165 198297745260f863d8ce21f556a45a3e 428 Gene3D G3DSA:1.20.1250.20 225 418 5.1E-18 T 11-10-2018 APT56_21165 198297745260f863d8ce21f556a45a3e 428 Pfam PF07690 Major Facilitator Superfamily 35 325 6.0E-30 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_21165 198297745260f863d8ce21f556a45a3e 428 Gene3D G3DSA:1.20.1250.20 10 197 7.0E-27 T 11-10-2018 APT56_21165 198297745260f863d8ce21f556a45a3e 428 SUPERFAMILY SSF103473 12 412 2.22E-55 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 SUPERFAMILY SSF46785 2 110 7.57E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 Gene3D G3DSA:1.10.10.10 1 90 1.9E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 SUPERFAMILY SSF53850 90 293 3.12E-38 T 11-10-2018 APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 Pfam PF03466 LysR substrate binding domain 88 293 2.3E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.1E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15675 c3e9034d282367184f8bf3c707781bd7 313 Gene3D G3DSA:3.40.190.290 91 298 4.1E-25 T 11-10-2018 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 Gene3D G3DSA:1.10.287.950 251 553 1.6E-95 T 11-10-2018 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 SUPERFAMILY SSF58104 271 556 3.14E-78 T 11-10-2018 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 479 508 7.6E-67 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 325 354 7.6E-67 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 402 429 7.6E-67 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 89 104 7.6E-67 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 34 59 7.6E-67 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 431 460 7.6E-67 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 SMART SM00283 304 551 2.1E-97 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 SUPERFAMILY SSF47170 55 214 3.66E-9 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 363 519 5.3E-56 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 Gene3D G3DSA:1.20.120.30 52 228 3.4E-5 T 11-10-2018 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 Pfam PF00672 HAMP domain 251 299 6.3E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 SMART SM00304 251 303 6.6E-14 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12050 7b941cac337acdd42a798ba2ce730a36 576 Pfam PF02203 Tar ligand binding domain homologue 34 188 1.3E-16 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_17810 7b249d3905f2f3c5782e26e916be1e7a 192 SUPERFAMILY SSF48498 83 190 2.64E-7 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_17810 7b249d3905f2f3c5782e26e916be1e7a 192 Gene3D G3DSA:1.10.357.10 1 192 3.5E-57 T 11-10-2018 APT56_17810 7b249d3905f2f3c5782e26e916be1e7a 192 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_17810 7b249d3905f2f3c5782e26e916be1e7a 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.6E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17810 7b249d3905f2f3c5782e26e916be1e7a 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.6E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17810 7b249d3905f2f3c5782e26e916be1e7a 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.4E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17810 7b249d3905f2f3c5782e26e916be1e7a 192 SUPERFAMILY SSF46689 3 87 8.21E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 SUPERFAMILY SSF53850 92 302 5.01E-41 T 11-10-2018 APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 SUPERFAMILY SSF46785 13 113 8.65E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 8.4E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 Gene3D G3DSA:3.40.190.10 92 304 7.9E-93 T 11-10-2018 APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 Gene3D G3DSA:3.40.190.10 167 268 7.9E-93 T 11-10-2018 APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 Pfam PF03466 LysR substrate binding domain 90 292 1.3E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 Gene3D G3DSA:1.10.10.10 1 85 2.7E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13195 e135d313bde90e7ad45de23ffd9dbb56 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02390 f11cd41a09c33f0be6ec5315ee58a20d 389 Gene3D G3DSA:3.40.50.2300 25 350 1.2E-88 T 11-10-2018 APT56_02390 f11cd41a09c33f0be6ec5315ee58a20d 389 SUPERFAMILY SSF53822 24 367 4.97E-79 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_02390 f11cd41a09c33f0be6ec5315ee58a20d 389 Pfam PF13458 Periplasmic binding protein 24 360 1.9E-67 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_02390 f11cd41a09c33f0be6ec5315ee58a20d 389 Gene3D G3DSA:3.40.50.2300 141 360 1.2E-88 T 11-10-2018 APT56_24665 fe99248c89e1c099a2c11bb58d985b68 449 Pfam PF03023 MviN-like protein 44 442 6.6E-35 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_20660 fa4071e6a363c6a53ded29d658d5475a 604 SUPERFAMILY SSF103515 308 604 7.98E-36 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_20660 fa4071e6a363c6a53ded29d658d5475a 604 SMART SM00869 321 594 3.0E-21 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_20660 fa4071e6a363c6a53ded29d658d5475a 604 Pfam PF03797 Autotransporter beta-domain 340 584 1.4E-38 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_20660 fa4071e6a363c6a53ded29d658d5475a 604 Gene3D G3DSA:3.40.50.1110 11 297 4.3E-55 T 11-10-2018 IPR036514 SGNH hydrolase superfamily APT56_20660 fa4071e6a363c6a53ded29d658d5475a 604 Gene3D G3DSA:2.40.128.130 305 604 2.0E-44 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_20660 fa4071e6a363c6a53ded29d658d5475a 604 SUPERFAMILY SSF52266 23 290 3.95E-11 T 11-10-2018 APT56_20660 fa4071e6a363c6a53ded29d658d5475a 604 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 355 604 1.2E-7 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_01010 d743d1b21df3028811af21a595bb6719 504 Pfam PF00271 Helicase conserved C-terminal domain 240 344 4.1E-25 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_01010 d743d1b21df3028811af21a595bb6719 504 Gene3D G3DSA:3.40.50.300 219 401 3.8E-47 T 11-10-2018 APT56_01010 d743d1b21df3028811af21a595bb6719 504 Pfam PF00270 DEAD/DEAH box helicase 29 199 3.1E-49 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_01010 d743d1b21df3028811af21a595bb6719 504 SMART SM00490 263 344 2.4E-29 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_01010 d743d1b21df3028811af21a595bb6719 504 SMART SM00487 24 227 2.7E-62 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_01010 d743d1b21df3028811af21a595bb6719 504 SUPERFAMILY SSF52540 79 365 2.28E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01010 d743d1b21df3028811af21a595bb6719 504 Gene3D G3DSA:3.40.50.300 2 215 3.3E-77 T 11-10-2018 APT56_01010 d743d1b21df3028811af21a595bb6719 504 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site APT56_01010 d743d1b21df3028811af21a595bb6719 504 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 5 494 49.354 T 11-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 APT56_21395 4b2e520b8a7b4a9b2cb2f634dcefd79d 303 SUPERFAMILY SSF51735 9 264 2.84E-28 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_21395 4b2e520b8a7b4a9b2cb2f634dcefd79d 303 Gene3D G3DSA:3.40.50.720 8 296 6.5E-38 T 11-10-2018 APT56_21395 4b2e520b8a7b4a9b2cb2f634dcefd79d 303 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 197 4.0E-19 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_14250 1168e3665a7ea3a217cc1e00323764cd 303 Gene3D G3DSA:1.10.760.10 119 203 7.6E-24 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14250 1168e3665a7ea3a217cc1e00323764cd 303 SUPERFAMILY SSF46626 116 202 4.65E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14250 1168e3665a7ea3a217cc1e00323764cd 303 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 233 298 1.7E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_14250 1168e3665a7ea3a217cc1e00323764cd 303 SUPERFAMILY SSF46626 232 301 2.91E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14250 1168e3665a7ea3a217cc1e00323764cd 303 Pfam PF00034 Cytochrome c 125 200 4.9E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_14250 1168e3665a7ea3a217cc1e00323764cd 303 Gene3D G3DSA:1.10.760.10 222 303 2.3E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_15590 44e5e9c2a6972eedba2f520314499540 325 SUPERFAMILY SSF53850 113 287 6.36E-11 T 11-10-2018 APT56_15590 44e5e9c2a6972eedba2f520314499540 325 Gene3D G3DSA:3.40.190.10 127 250 3.1E-113 T 11-10-2018 APT56_15590 44e5e9c2a6972eedba2f520314499540 325 PIRSF PIRSF017082 1 323 3.6E-79 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_15590 44e5e9c2a6972eedba2f520314499540 325 Gene3D G3DSA:3.40.190.150 29 315 3.1E-113 T 11-10-2018 APT56_15590 44e5e9c2a6972eedba2f520314499540 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 317 3.2E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 1.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 1.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 1.9E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 3.8E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 3.8E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 3.8E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 3.8E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 3.8E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.8E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04735 ef09b31c7f911291577479dd57268774 304 Gene3D G3DSA:3.40.50.720 4 293 3.5E-72 T 11-10-2018 APT56_04735 ef09b31c7f911291577479dd57268774 304 SUPERFAMILY SSF51735 6 257 1.6E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_04735 ef09b31c7f911291577479dd57268774 304 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_04735 ef09b31c7f911291577479dd57268774 304 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 249 3.1E-43 T 11-10-2018 APT56_04735 ef09b31c7f911291577479dd57268774 304 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 204 2.2E-7 T 11-10-2018 APT56_17100 d56e2d245844b8671d08d6c0a30f1188 391 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 219 382 9.0E-32 T 11-10-2018 IPR000160 GGDEF domain APT56_17100 d56e2d245844b8671d08d6c0a30f1188 391 Gene3D G3DSA:3.30.70.270 211 384 9.0E-44 T 11-10-2018 APT56_17100 d56e2d245844b8671d08d6c0a30f1188 391 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 378 5.8E-33 T 11-10-2018 IPR000160 GGDEF domain APT56_17100 d56e2d245844b8671d08d6c0a30f1188 391 SMART SM00267 210 382 3.1E-35 T 11-10-2018 IPR000160 GGDEF domain APT56_17100 d56e2d245844b8671d08d6c0a30f1188 391 SUPERFAMILY SSF55073 226 380 1.41E-37 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_14700 7cb37a4e65de12e0efbfa1b45d5314e4 826 Gene3D G3DSA:1.25.40.10 284 499 3.7E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14700 7cb37a4e65de12e0efbfa1b45d5314e4 826 Gene3D G3DSA:1.25.40.10 585 826 1.7E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14700 7cb37a4e65de12e0efbfa1b45d5314e4 826 SUPERFAMILY SSF48452 294 415 5.69E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14700 7cb37a4e65de12e0efbfa1b45d5314e4 826 SUPERFAMILY SSF48452 534 802 6.42E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 PRINTS PR00148 Enolase signature 335 349 3.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 PRINTS PR00148 Enolase signature 37 51 3.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 PRINTS PR00148 Enolase signature 312 323 3.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 PRINTS PR00148 Enolase signature 161 174 3.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 PRINTS PR00148 Enolase signature 107 123 3.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 PRINTS PR00148 Enolase signature 364 381 3.0E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 SUPERFAMILY SSF51604 139 427 1.7E-127 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 SMART SM01192 139 426 1.3E-216 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 424 2.5E-129 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 Hamap MF_00318 Enolase [eno]. 2 412 44.228 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 ProSitePatterns PS00164 Enolase signature. 335 348 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 PIRSF PIRSF001400 1 426 1.4E-186 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 Gene3D G3DSA:3.20.20.120 128 428 2.6E-129 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 426 3.8E-204 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 SMART SM01193 4 134 1.8E-89 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 Pfam PF03952 Enolase, N-terminal domain 4 133 3.2E-56 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 Gene3D G3DSA:3.30.390.10 1 127 4.9E-54 T 11-10-2018 IPR029017 Enolase-like, N-terminal APT56_07070 e950c112e33adfeba7a8cc85358906ce 428 SUPERFAMILY SSF54826 4 136 5.96E-54 T 11-10-2018 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 SUPERFAMILY SSF47413 16 86 1.35E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 Hamap MF_00109 Shikimate kinase [aroK]. 129 296 20.266 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 SUPERFAMILY SSF52540 131 290 4.03E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 Gene3D G3DSA:3.40.50.300 121 298 2.6E-40 T 11-10-2018 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 SMART SM00530 25 80 6.5E-11 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 Pfam PF01381 Helix-turn-helix 27 80 3.7E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 PRINTS PR01100 Shikimate kinase family signature 184 192 7.6E-12 T 11-10-2018 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 PRINTS PR01100 Shikimate kinase family signature 156 169 7.6E-12 T 11-10-2018 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 PRINTS PR01100 Shikimate kinase family signature 132 147 7.6E-12 T 11-10-2018 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 PRINTS PR01100 Shikimate kinase family signature 203 212 7.6E-12 T 11-10-2018 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 Gene3D G3DSA:1.10.260.40 20 92 1.6E-13 T 11-10-2018 APT56_22190 3789a2c8ecb1b1adf495a464087db7c9 303 Pfam PF01202 Shikimate kinase 138 286 3.8E-32 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APT56_05900 6f6e66beb04f24d606458190ee8838c4 89 Pfam PF00312 Ribosomal protein S15 8 88 9.0E-38 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_05900 6f6e66beb04f24d606458190ee8838c4 89 Gene3D G3DSA:1.10.287.10 1 89 5.6E-36 T 11-10-2018 APT56_05900 6f6e66beb04f24d606458190ee8838c4 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 1.0E-31 T 11-10-2018 APT56_05900 6f6e66beb04f24d606458190ee8838c4 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_05900 6f6e66beb04f24d606458190ee8838c4 89 SMART SM01387 8 88 1.2E-52 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_05900 6f6e66beb04f24d606458190ee8838c4 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.037 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_05900 6f6e66beb04f24d606458190ee8838c4 89 SUPERFAMILY SSF47060 4 89 2.94E-35 T 11-10-2018 IPR009068 S15/NS1, RNA-binding APT56_05900 6f6e66beb04f24d606458190ee8838c4 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 9.0E-39 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_16540 03282d3694bf7b44418e1385d7f1f4c1 223 Pfam PF07007 Lysozyme inhibitor LprI 25 103 1.7E-7 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal APT56_17175 f00d4fdb233a8901e94325101183452d 220 SUPERFAMILY SSF46689 14 93 2.24E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_17175 f00d4fdb233a8901e94325101183452d 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 70 4.9E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17175 f00d4fdb233a8901e94325101183452d 220 Gene3D G3DSA:1.10.357.10 21 210 1.7E-66 T 11-10-2018 APT56_17175 f00d4fdb233a8901e94325101183452d 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 1.7E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17175 f00d4fdb233a8901e94325101183452d 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 1.7E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_12315 4703f66ed1b5db69422e30813f4665b6 262 Gene3D G3DSA:3.30.1330.30 2 102 5.9E-7 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like APT56_12315 4703f66ed1b5db69422e30813f4665b6 262 SUPERFAMILY SSF75217 93 260 7.19E-36 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APT56_12315 4703f66ed1b5db69422e30813f4665b6 262 SUPERFAMILY SSF55315 2 102 3.3E-10 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like APT56_12315 4703f66ed1b5db69422e30813f4665b6 262 Gene3D G3DSA:3.40.1280.10 106 261 1.0E-39 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT56_12315 4703f66ed1b5db69422e30813f4665b6 262 Pfam PF00588 SpoU rRNA Methylase family 113 250 9.7E-29 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 Gene3D G3DSA:1.10.287.130 180 295 1.5E-16 T 11-10-2018 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 293 5.7E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 SMART SM00387 339 450 4.0E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 447 6.4E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 6.4E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 6.4E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 6.4E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 SMART SM00388 229 294 1.1E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 SUPERFAMILY SSF47384 213 293 8.24E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 446 4.8E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 Pfam PF08521 Two-component sensor kinase N-terminal 16 140 8.0E-6 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 Gene3D G3DSA:3.30.565.10 302 448 5.5E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_17260 824ec0fffe26a3692ff935936e2624f1 453 SUPERFAMILY SSF55874 284 447 6.94E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 Gene3D G3DSA:3.30.1330.10 1 142 2.1E-48 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 SUPERFAMILY SSF56042 141 302 1.64E-31 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 Gene3D G3DSA:3.90.650.10 144 318 2.3E-48 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 SUPERFAMILY SSF55326 4 136 3.14E-35 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 PIRSF PIRSF005303 2 318 2.2E-75 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 Pfam PF00586 AIR synthase related protein, N-terminal domain 25 136 1.3E-25 T 11-10-2018 IPR016188 PurM-like, N-terminal domain APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 2 318 26.098 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 318 8.0E-93 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APT56_24360 42b5a80e0bdb0e46bdb74eed57437ba8 321 Pfam PF02769 AIR synthase related protein, C-terminal domain 188 301 9.8E-11 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APT56_07635 e7f469f3bcac7795551fe49a506eec80 249 SUPERFAMILY SSF52402 1 242 1.26E-86 T 11-10-2018 APT56_07635 e7f469f3bcac7795551fe49a506eec80 249 Pfam PF01012 Electron transfer flavoprotein domain 28 206 7.6E-47 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 APT56_07635 e7f469f3bcac7795551fe49a506eec80 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 11-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 APT56_07635 e7f469f3bcac7795551fe49a506eec80 249 SMART SM00893 23 211 1.3E-68 T 11-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 APT56_07635 e7f469f3bcac7795551fe49a506eec80 249 PIRSF PIRSF000090 1 249 3.8E-86 T 11-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 APT56_07635 e7f469f3bcac7795551fe49a506eec80 249 Gene3D G3DSA:3.40.50.620 1 247 7.6E-90 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_24830 d4b4667cea52302e790993e996f56520 630 Pfam PF01103 Surface antigen 443 630 3.5E-23 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 APT56_24830 d4b4667cea52302e790993e996f56520 630 Gene3D G3DSA:3.10.20.310 198 263 5.2E-8 T 11-10-2018 APT56_24830 d4b4667cea52302e790993e996f56520 630 Gene3D G3DSA:2.40.160.50 319 629 5.3E-50 T 11-10-2018 APT56_24830 d4b4667cea52302e790993e996f56520 630 Pfam PF17243 POTRA domain TamA domain 1 32 94 3.2E-7 T 11-10-2018 IPR035243 TamA, POTRA domain 1 APT56_00200 c5e885fe690f95384fefae73f6b31e4c 225 SMART SM00448 1 113 2.0E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_00200 c5e885fe690f95384fefae73f6b31e4c 225 Gene3D G3DSA:3.40.50.2300 1 122 2.0E-31 T 11-10-2018 APT56_00200 c5e885fe690f95384fefae73f6b31e4c 225 Gene3D G3DSA:1.10.10.10 125 224 2.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00200 c5e885fe690f95384fefae73f6b31e4c 225 SUPERFAMILY SSF52172 1 167 4.27E-34 T 11-10-2018 IPR011006 CheY-like superfamily APT56_00200 c5e885fe690f95384fefae73f6b31e4c 225 SMART SM00862 146 219 5.6E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_00200 c5e885fe690f95384fefae73f6b31e4c 225 Pfam PF00072 Response regulator receiver domain 3 113 2.2E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_00200 c5e885fe690f95384fefae73f6b31e4c 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 2.3E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_21155 f7fdc410165ae14bf7bd238fc5eaa678 302 Gene3D G3DSA:1.10.10.10 7 93 3.8E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21155 f7fdc410165ae14bf7bd238fc5eaa678 302 Gene3D G3DSA:3.40.190.10 94 291 2.5E-61 T 11-10-2018 APT56_21155 f7fdc410165ae14bf7bd238fc5eaa678 302 SUPERFAMILY SSF53850 92 299 2.35E-41 T 11-10-2018 APT56_21155 f7fdc410165ae14bf7bd238fc5eaa678 302 SUPERFAMILY SSF46785 8 114 5.1E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21155 f7fdc410165ae14bf7bd238fc5eaa678 302 Gene3D G3DSA:3.40.190.10 166 267 2.5E-61 T 11-10-2018 APT56_21155 f7fdc410165ae14bf7bd238fc5eaa678 302 Pfam PF03466 LysR substrate binding domain 91 295 4.3E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21155 f7fdc410165ae14bf7bd238fc5eaa678 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.6E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07665 12f579936a224bb51d6fb19e023a9efa 213 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 157 191 1.7E-11 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_07665 12f579936a224bb51d6fb19e023a9efa 213 Gene3D G3DSA:3.30.1020.10 147 211 1.6E-27 T 11-10-2018 APT56_07665 12f579936a224bb51d6fb19e023a9efa 213 Pfam PF00578 AhpC/TSA family 7 136 7.9E-34 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_07665 12f579936a224bb51d6fb19e023a9efa 213 SUPERFAMILY SSF52833 4 210 4.01E-70 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_07665 12f579936a224bb51d6fb19e023a9efa 213 PIRSF PIRSF000239 1 210 1.6E-79 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_07665 12f579936a224bb51d6fb19e023a9efa 213 Gene3D G3DSA:3.40.30.10 2 146 1.0E-52 T 11-10-2018 APT56_27575 721bfe75a4a0143c8508831da7e93a6e 358 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 358 71.169 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APT56_27575 721bfe75a4a0143c8508831da7e93a6e 358 Pfam PF01761 3-dehydroquinate synthase 66 323 1.5E-106 T 11-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APT56_27575 721bfe75a4a0143c8508831da7e93a6e 358 SUPERFAMILY SSF56796 10 353 8.77E-111 T 11-10-2018 APT56_27575 721bfe75a4a0143c8508831da7e93a6e 358 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 345 3.5E-116 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APT56_27575 721bfe75a4a0143c8508831da7e93a6e 358 Gene3D G3DSA:1.20.1090.10 172 357 6.3E-62 T 11-10-2018 APT56_27575 721bfe75a4a0143c8508831da7e93a6e 358 PIRSF PIRSF001455 14 357 2.3E-108 T 11-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APT56_27575 721bfe75a4a0143c8508831da7e93a6e 358 Gene3D G3DSA:3.40.50.1970 1 171 3.3E-61 T 11-10-2018 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 SUPERFAMILY SSF55124 1 125 1.8E-29 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 Gene3D G3DSA:3.90.480.20 310 399 3.8E-19 T 11-10-2018 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 Gene3D G3DSA:3.90.480.20 5 139 2.4E-23 T 11-10-2018 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 411 562 1.7E-8 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 271 3.0E-40 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 327 398 9.4E-18 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 109 1.2E-15 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 SUPERFAMILY SSF56014 408 562 2.09E-35 T 11-10-2018 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 Gene3D G3DSA:3.30.413.10 408 577 1.6E-28 T 11-10-2018 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 SUPERFAMILY SSF55124 251 421 4.58E-26 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 Gene3D G3DSA:3.30.413.10 147 275 8.5E-31 T 11-10-2018 APT56_26085 3c152ee354d7ba39ef6db869045866db 578 SUPERFAMILY SSF56014 120 281 8.51E-47 T 11-10-2018 APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 Pfam PF13193 AMP-binding enzyme C-terminal domain 543 624 1.0E-27 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 33 88 2.6E-18 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 10 659 51.754 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 SUPERFAMILY SSF56801 17 655 4.06E-172 T 11-10-2018 APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 Pfam PF00501 AMP-binding enzyme 96 534 6.9E-96 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 Gene3D G3DSA:3.40.50.12780 60 527 3.0E-107 T 11-10-2018 APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 Gene3D G3DSA:3.30.300.30 530 659 3.3E-29 T 11-10-2018 APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 ProSitePatterns PS00455 Putative AMP-binding domain signature. 268 279 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_06955 9dcd686031b1ed4c7d02a41b0627732d 659 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 29 657 2.2E-296 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 APT56_02730 aaa29bcd357557e0435b0e2c241e3cfe 243 SMART SM00382 26 209 6.1E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02730 aaa29bcd357557e0435b0e2c241e3cfe 243 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_02730 aaa29bcd357557e0435b0e2c241e3cfe 243 SUPERFAMILY SSF52540 2 235 1.3E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02730 aaa29bcd357557e0435b0e2c241e3cfe 243 Gene3D G3DSA:3.40.50.300 1 239 8.5E-77 T 11-10-2018 APT56_02730 aaa29bcd357557e0435b0e2c241e3cfe 243 Pfam PF00005 ABC transporter 17 165 3.6E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_02730 aaa29bcd357557e0435b0e2c241e3cfe 243 PIRSF PIRSF039085 1 240 1.8E-107 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_11780 df70efca8bfb5d54c4b9c3bb9125de16 301 SUPERFAMILY SSF46785 2 103 1.36E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11780 df70efca8bfb5d54c4b9c3bb9125de16 301 Gene3D G3DSA:1.10.10.10 1 82 2.3E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11780 df70efca8bfb5d54c4b9c3bb9125de16 301 Pfam PF03466 LysR substrate binding domain 83 287 9.8E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11780 df70efca8bfb5d54c4b9c3bb9125de16 301 Gene3D G3DSA:3.40.190.290 85 286 4.7E-50 T 11-10-2018 APT56_11780 df70efca8bfb5d54c4b9c3bb9125de16 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 57 4.3E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11780 df70efca8bfb5d54c4b9c3bb9125de16 301 SUPERFAMILY SSF53850 84 289 5.79E-35 T 11-10-2018 APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF13332 Haemagluttinin repeat 2474 2648 3.9E-42 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF13332 Haemagluttinin repeat 2144 2210 1.9E-5 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF13332 Haemagluttinin repeat 2220 2304 1.1E-6 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF13332 Haemagluttinin repeat 1917 2057 5.7E-9 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05860 haemagglutination activity domain 7 139 8.0E-30 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 924 979 0.011 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 1160 1224 0.065 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 1025 1082 1.7E-7 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 696 779 0.074 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 622 687 3.3E-4 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 543 603 9.7E-5 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 1085 1146 16.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 193 267 8.3E-5 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 797 874 2.9E-13 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 301 359 9.1 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 1297 1351 1.4 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF05594 Haemagluttinin repeat 879 913 2.2 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 37 136 5.1E-20 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 SMART SM00912 19 141 1.6E-46 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Gene3D G3DSA:2.160.20.10 5 312 7.3E-98 T 11-10-2018 IPR012334 Pectin lyase fold APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 SUPERFAMILY SSF51126 10 271 4.39E-57 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 Pfam PF04829 Pre-toxin domain with VENN motif 2990 3039 4.2E-18 T 11-10-2018 IPR006914 VENN motif-containing domain APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 910 949 7.5E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 457 487 0.035 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 880 908 0.012 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1163 1197 4.4E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 675 715 0.21 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 592 632 7.6E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1114 1147 7.2E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 572 612 1.6E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1073 1113 1.2 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1323 1361 0.0029 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1540 1580 6.1E-7 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 503 529 6.4E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1860 1879 0.029 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 531 572 0.008 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 760 800 0.016 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 818 839 0.088 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 511 549 7.3E-7 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1268 1297 0.99 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1032 1071 3.7E-10 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 247 266 1.3 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 992 1031 3.6E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 841 874 4.3E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 475 491 1.4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1619 1637 1.8 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 295 330 0.03 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 719 759 2.3E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 951 990 1.5E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 638 674 0.0019 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1094 1134 2.9E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_07370 ba67ba6a2e5bdcc33c92a71f73e58aed 3324 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 656 688 0.0028 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_04710 d8bf7a7a0b3df2addf6e61cd48eea7fb 255 Gene3D G3DSA:3.90.226.10 1 197 1.0E-68 T 11-10-2018 APT56_04710 d8bf7a7a0b3df2addf6e61cd48eea7fb 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 254 4.6E-57 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_04710 d8bf7a7a0b3df2addf6e61cd48eea7fb 255 SUPERFAMILY SSF52096 1 254 1.39E-79 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_04710 d8bf7a7a0b3df2addf6e61cd48eea7fb 255 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 96 116 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 APT56_04710 d8bf7a7a0b3df2addf6e61cd48eea7fb 255 Gene3D G3DSA:1.10.12.10 198 255 1.1E-23 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_26440 40c09f3dfe8222ec7cd93e6e268fc4db 489 PIRSF PIRSF006247 1 489 1.2E-158 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 APT56_26440 40c09f3dfe8222ec7cd93e6e268fc4db 489 Pfam PF02386 Cation transport protein 39 483 2.6E-61 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 APT56_13235 2f33228a2fce8801ce277313740eba4d 329 Pfam PF04773 FecR protein 122 217 3.2E-16 T 11-10-2018 IPR006860 FecR protein APT56_13235 2f33228a2fce8801ce277313740eba4d 329 Gene3D G3DSA:2.60.120.1440 108 242 1.7E-16 T 11-10-2018 APT56_13235 2f33228a2fce8801ce277313740eba4d 329 PIRSF PIRSF018266 15 329 3.9E-82 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_13235 2f33228a2fce8801ce277313740eba4d 329 Pfam PF16220 Domain of unknown function (DUF4880) 25 66 1.1E-10 T 11-10-2018 IPR032623 FecR, N-terminal APT56_26470 b9589f38a5740a84481d1c498020b461 210 Pfam PF01810 LysE type translocator 15 204 4.6E-31 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_26470 b9589f38a5740a84481d1c498020b461 210 PIRSF PIRSF006324 1 207 1.6E-50 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 SUPERFAMILY SSF50129 5 171 3.3E-45 T 11-10-2018 IPR011032 GroES-like superfamily APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 Gene3D G3DSA:3.90.180.10 12 342 1.1E-131 T 11-10-2018 APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 SUPERFAMILY SSF51735 151 312 4.48E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 SMART SM00829 13 342 2.1E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 Gene3D G3DSA:3.40.50.720 159 314 1.1E-131 T 11-10-2018 APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 142 1.4E-26 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 178 205 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 Pfam PF00107 Zinc-binding dehydrogenase 185 308 2.2E-26 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_19375 f1be36d7cea6324d7ad6c993dec894fc 349 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT56_15305 28145d778b987ec74270b896a35cf740 290 Pfam PF00892 EamA-like transporter family 16 138 1.0E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_15305 28145d778b987ec74270b896a35cf740 290 Pfam PF00892 EamA-like transporter family 150 281 5.6E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_15305 28145d778b987ec74270b896a35cf740 290 SUPERFAMILY SSF103481 191 284 8.11E-12 T 11-10-2018 APT56_15305 28145d778b987ec74270b896a35cf740 290 SUPERFAMILY SSF103481 43 141 4.45E-8 T 11-10-2018 APT56_15000 bdfff1f885af5ae26585974d0b418ee5 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 309 6.8E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_09720 969d51065f4cc4c5ec51d911656f5ea4 488 SMART SM00267 28 224 5.0E-4 T 11-10-2018 IPR000160 GGDEF domain APT56_09720 969d51065f4cc4c5ec51d911656f5ea4 488 SMART SM00052 234 479 7.2E-101 T 11-10-2018 IPR001633 EAL domain APT56_09720 969d51065f4cc4c5ec51d911656f5ea4 488 Pfam PF00563 EAL domain 245 474 6.9E-70 T 11-10-2018 IPR001633 EAL domain APT56_09720 969d51065f4cc4c5ec51d911656f5ea4 488 SUPERFAMILY SSF55073 96 225 2.12E-14 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_09720 969d51065f4cc4c5ec51d911656f5ea4 488 SUPERFAMILY SSF141868 241 483 3.4E-83 T 11-10-2018 IPR035919 EAL domain superfamily APT56_09720 969d51065f4cc4c5ec51d911656f5ea4 488 Gene3D G3DSA:3.30.70.270 36 229 2.0E-19 T 11-10-2018 APT56_09720 969d51065f4cc4c5ec51d911656f5ea4 488 Pfam PF00990 Diguanylate cyclase, GGDEF domain 96 217 3.1E-11 T 11-10-2018 IPR000160 GGDEF domain APT56_09720 969d51065f4cc4c5ec51d911656f5ea4 488 Gene3D G3DSA:3.20.20.450 236 487 9.5E-90 T 11-10-2018 IPR035919 EAL domain superfamily APT56_20535 4f04895dcd680438f8f0b4fb7b6e8139 161 Pfam PF13673 Acetyltransferase (GNAT) domain 40 141 5.9E-13 T 11-10-2018 IPR000182 GNAT domain APT56_20535 4f04895dcd680438f8f0b4fb7b6e8139 161 SUPERFAMILY SSF55729 7 148 6.1E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_20535 4f04895dcd680438f8f0b4fb7b6e8139 161 Gene3D G3DSA:3.40.630.30 3 160 4.3E-29 T 11-10-2018 APT56_09465 c6c409231f2a1d531edccc8cfeecb444 272 Gene3D G3DSA:1.10.1270.20 177 255 9.3E-26 T 11-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT56_09465 c6c409231f2a1d531edccc8cfeecb444 272 Gene3D G3DSA:3.40.1280.10 1 176 1.3E-62 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT56_09465 c6c409231f2a1d531edccc8cfeecb444 272 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 234 3.2E-83 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT56_09465 c6c409231f2a1d531edccc8cfeecb444 272 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 272 103.471 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT56_09465 c6c409231f2a1d531edccc8cfeecb444 272 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 228 3.9E-56 T 11-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT56_09465 c6c409231f2a1d531edccc8cfeecb444 272 PIRSF PIRSF000386 1 253 3.4E-86 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APT56_09465 c6c409231f2a1d531edccc8cfeecb444 272 SUPERFAMILY SSF75217 1 237 1.44E-88 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APT56_25670 1edb64bb066ad77c863f4417d5b9675f 282 SUPERFAMILY SSF51621 8 279 8.07E-92 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_25670 1edb64bb066ad77c863f4417d5b9675f 282 Pfam PF13714 Phosphoenolpyruvate phosphomutase 12 248 3.2E-57 T 11-10-2018 APT56_25670 1edb64bb066ad77c863f4417d5b9675f 282 ProSitePatterns PS00161 Isocitrate lyase signature. 115 120 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 APT56_25670 1edb64bb066ad77c863f4417d5b9675f 282 Gene3D G3DSA:3.20.20.60 2 282 3.4E-100 T 11-10-2018 APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 Gene3D G3DSA:3.60.20.40 417 609 5.3E-43 T 11-10-2018 APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 Pfam PF01019 Gamma-glutamyltranspeptidase 31 602 1.0E-118 T 11-10-2018 APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 SUPERFAMILY SSF56235 4 609 4.63E-132 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 Gene3D G3DSA:1.10.246.130 265 378 1.3E-30 T 11-10-2018 APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 471 486 1.0E-20 T 11-10-2018 APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 495 512 1.0E-20 T 11-10-2018 APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 108 126 1.0E-20 T 11-10-2018 APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 126 145 1.0E-20 T 11-10-2018 APT56_22445 74b3ca10c3e57b133f93ab31293fd34a 610 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 37 62 1.0E-20 T 11-10-2018 APT56_15730 f2ef95bf1845c5efbfdc81130fe463ee 193 Gene3D G3DSA:1.10.357.10 52 191 5.9E-35 T 11-10-2018 APT56_15730 f2ef95bf1845c5efbfdc81130fe463ee 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.9E-14 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_15730 f2ef95bf1845c5efbfdc81130fe463ee 193 SUPERFAMILY SSF46689 3 71 2.0E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_15730 f2ef95bf1845c5efbfdc81130fe463ee 193 SUPERFAMILY SSF48498 87 191 1.11E-24 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_15730 f2ef95bf1845c5efbfdc81130fe463ee 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.3E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_15730 f2ef95bf1845c5efbfdc81130fe463ee 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.3E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_15730 f2ef95bf1845c5efbfdc81130fe463ee 193 Gene3D G3DSA:1.10.10.60 5 51 7.0E-17 T 11-10-2018 APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 Gene3D G3DSA:3.20.20.120 102 344 2.6E-147 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 SUPERFAMILY SSF54826 1 112 6.3E-31 T 11-10-2018 APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 SMART SM00922 125 230 2.5E-22 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 15 107 7.7E-26 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 SUPERFAMILY SSF51604 95 359 3.01E-79 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 Gene3D G3DSA:3.30.390.10 11 374 2.6E-147 T 11-10-2018 IPR029017 Enolase-like, N-terminal APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 82 107 - T 11-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 Pfam PF13378 Enolase C-terminal domain-like 130 355 9.8E-62 T 11-10-2018 IPR029065 Enolase C-terminal domain-like APT56_25350 7057a7b279a6c6f9af73cec69343343d 382 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 180 211 - T 11-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 APT56_08290 9005bb5e62e4d43c91c615fffffe305f 270 SUPERFAMILY SSF69618 11 254 2.35E-34 T 11-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_08290 9005bb5e62e4d43c91c615fffffe305f 270 Gene3D G3DSA:3.40.50.10090 41 180 4.6E-44 T 11-10-2018 APT56_08290 9005bb5e62e4d43c91c615fffffe305f 270 Gene3D G3DSA:3.40.50.10090 13 239 4.6E-44 T 11-10-2018 APT56_08290 9005bb5e62e4d43c91c615fffffe305f 270 Pfam PF02602 Uroporphyrinogen-III synthase HemD 23 243 8.5E-26 T 11-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APT56_05000 6c46767f7ba075ebe2125b14cda772b7 278 SUPERFAMILY SSF69572 12 277 5.49E-56 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 APT56_05000 6c46767f7ba075ebe2125b14cda772b7 278 Gene3D G3DSA:3.40.50.720 6 278 2.8E-86 T 11-10-2018 APT56_05000 6c46767f7ba075ebe2125b14cda772b7 278 Pfam PF00899 ThiF family 21 274 3.2E-32 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APT56_25030 46970bda92fbbcc4d8140e24c0539163 471 Pfam PF00890 FAD binding domain 3 431 2.6E-34 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_25030 46970bda92fbbcc4d8140e24c0539163 471 Gene3D G3DSA:3.90.700.10 235 396 1.6E-87 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_25030 46970bda92fbbcc4d8140e24c0539163 471 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 2 459 3.1E-210 T 11-10-2018 IPR012831 Precorrin 3B synthase CobZ APT56_25030 46970bda92fbbcc4d8140e24c0539163 471 SUPERFAMILY SSF56425 234 395 2.2E-22 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_25030 46970bda92fbbcc4d8140e24c0539163 471 SUPERFAMILY SSF51905 2 460 7.79E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_25030 46970bda92fbbcc4d8140e24c0539163 471 Gene3D G3DSA:3.50.50.60 2 454 1.6E-87 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 Pfam PF00583 Acetyltransferase (GNAT) family 232 300 1.9E-9 T 11-10-2018 IPR000182 GNAT domain APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 Pfam PF12802 MarR family 39 98 2.0E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 SUPERFAMILY SSF55729 180 312 6.69E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 Gene3D G3DSA:1.10.10.10 5 153 8.9E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 Gene3D G3DSA:3.40.630.30 179 310 2.1E-17 T 11-10-2018 APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 SMART SM00347 34 134 1.4E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 2.3E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 2.3E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 2.3E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_23740 81e740bba36b9d6c3b7f70be12163114 325 SUPERFAMILY SSF46785 13 150 1.91E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16030 f67ac991542b68fa46d649dd596ac428 164 Pfam PF13302 Acetyltransferase (GNAT) domain 7 142 1.6E-32 T 11-10-2018 IPR000182 GNAT domain APT56_16030 f67ac991542b68fa46d649dd596ac428 164 SUPERFAMILY SSF55729 4 151 2.52E-32 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_16030 f67ac991542b68fa46d649dd596ac428 164 Gene3D G3DSA:3.40.630.30 3 160 7.0E-39 T 11-10-2018 APT56_09240 39b4fd562cfc53a2ba658c7531e098b3 539 Gene3D G3DSA:1.20.1720.10 37 266 4.9E-45 T 11-10-2018 APT56_09240 39b4fd562cfc53a2ba658c7531e098b3 539 SUPERFAMILY SSF103473 25 524 1.31E-63 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_09240 39b4fd562cfc53a2ba658c7531e098b3 539 Pfam PF07690 Major Facilitator Superfamily 40 432 5.2E-52 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_09240 39b4fd562cfc53a2ba658c7531e098b3 539 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 36 518 2.2E-159 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 APT56_14640 4d29a3bf379da86de374a3a870d3b6fa 367 Gene3D G3DSA:3.40.710.10 39 351 1.9E-47 T 11-10-2018 APT56_14640 4d29a3bf379da86de374a3a870d3b6fa 367 Pfam PF00144 Beta-lactamase 45 345 6.4E-35 T 11-10-2018 IPR001466 Beta-lactamase-related APT56_14640 4d29a3bf379da86de374a3a870d3b6fa 367 SUPERFAMILY SSF56601 36 347 8.14E-46 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Pfam PF00575 S1 RNA binding domain 199 269 1.6E-23 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Pfam PF00575 S1 RNA binding domain 28 94 4.8E-6 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Pfam PF00575 S1 RNA binding domain 371 443 4.6E-18 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Pfam PF00575 S1 RNA binding domain 112 180 3.5E-12 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Pfam PF00575 S1 RNA binding domain 458 529 3.5E-14 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Pfam PF00575 S1 RNA binding domain 285 356 1.3E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Gene3D G3DSA:2.40.50.140 367 452 2.3E-25 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Gene3D G3DSA:2.40.50.140 107 190 1.4E-9 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Gene3D G3DSA:2.40.50.140 277 366 2.9E-28 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SUPERFAMILY SSF50249 13 122 7.46E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Gene3D G3DSA:2.40.50.140 15 106 1.5E-15 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Gene3D G3DSA:2.40.50.140 196 276 1.1E-28 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SUPERFAMILY SSF50249 199 286 1.29E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 164 184 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 117 133 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 93 112 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 221 242 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 30 48 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 339 357 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 135 152 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 48 62 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PRINTS PR00681 Ribosomal protein S1 signature 299 318 4.8E-81 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 Gene3D G3DSA:2.40.50.140 453 536 9.4E-19 T 11-10-2018 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 PIRSF PIRSF002111 1 543 1.4E-213 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 12 529 5.0E-206 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SUPERFAMILY SSF50249 264 365 7.31E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SUPERFAMILY SSF50249 355 446 3.66E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SUPERFAMILY SSF50249 438 540 3.28E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SUPERFAMILY SSF50249 112 194 7.17E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SMART SM00316 371 443 2.0E-21 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SMART SM00316 112 180 2.6E-10 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SMART SM00316 284 356 4.2E-24 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SMART SM00316 28 96 0.0041 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SMART SM00316 458 529 1.7E-15 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_07570 0ac3bbe4aaf1cc616ac5957f834fd5b4 570 SMART SM00316 199 269 1.9E-29 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_14275 a5f6138fe3e2a1da1daed914968d52e3 365 Pfam PF05359 Domain of Unknown Function (DUF748) 144 281 5.6E-17 T 11-10-2018 IPR008023 Protein of unknown function DUF748 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 Gene3D G3DSA:3.30.470.20 377 473 1.5E-6 T 11-10-2018 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 Gene3D G3DSA:3.30.1490.20 219 309 4.2E-18 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 219 304 1.4E-6 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 Gene3D G3DSA:3.90.190.20 728 856 2.2E-9 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 7 868 0.0 T 11-10-2018 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 SUPERFAMILY SSF56059 219 494 4.42E-33 T 11-10-2018 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 SUPERFAMILY SSF53244 726 867 4.76E-15 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 Gene3D G3DSA:3.40.1190.10 478 716 2.6E-31 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 Pfam PF08245 Mur ligase middle domain 486 698 1.1E-13 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APT56_07405 6974aa754cc2f221f8649e6866cde133 871 SUPERFAMILY SSF53623 480 715 6.41E-31 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_20410 7bd6ae69476bd5f4386cefb88a150b7d 337 Gene3D G3DSA:3.40.50.720 128 273 5.9E-104 T 11-10-2018 APT56_20410 7bd6ae69476bd5f4386cefb88a150b7d 337 SUPERFAMILY SSF50129 13 144 8.98E-33 T 11-10-2018 IPR011032 GroES-like superfamily APT56_20410 7bd6ae69476bd5f4386cefb88a150b7d 337 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 337 1.6E-165 T 11-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 APT56_20410 7bd6ae69476bd5f4386cefb88a150b7d 337 Pfam PF13602 Zinc-binding dehydrogenase 194 334 9.0E-22 T 11-10-2018 APT56_20410 7bd6ae69476bd5f4386cefb88a150b7d 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 90 6.1E-7 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_20410 7bd6ae69476bd5f4386cefb88a150b7d 337 SMART SM00829 13 334 1.1E-11 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_20410 7bd6ae69476bd5f4386cefb88a150b7d 337 SUPERFAMILY SSF51735 117 286 8.03E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_20410 7bd6ae69476bd5f4386cefb88a150b7d 337 Gene3D G3DSA:3.90.180.10 23 334 5.9E-104 T 11-10-2018 APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 Gene3D G3DSA:3.40.50.300 144 340 4.0E-72 T 11-10-2018 APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 Pfam PF00271 Helicase conserved C-terminal domain 459 553 1.9E-5 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 Hamap MF_00983 Probable primosomal protein N' [priA]. 23 701 23.651 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 Pfam PF00270 DEAD/DEAH box helicase 159 324 2.4E-11 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 SUPERFAMILY SSF52540 175 565 1.9E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 SMART SM00490 457 554 5.7E-7 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 SMART SM00487 153 357 3.0E-13 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 TIGRFAM TIGR00595 priA: primosomal protein N' 178 699 5.3E-170 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 APT56_02200 b05940997fb02fd6026c6a9a4ac27c16 701 Gene3D G3DSA:1.10.8.630 20 125 9.9E-29 T 11-10-2018 APT56_26605 83d5096a8f328ed38836728fb43097d9 583 ProSitePatterns PS00211 ABC transporters family signature. 505 519 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_26605 83d5096a8f328ed38836728fb43097d9 583 SMART SM00382 394 579 6.8E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_26605 83d5096a8f328ed38836728fb43097d9 583 SUPERFAMILY SSF90123 22 344 4.19E-51 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_26605 83d5096a8f328ed38836728fb43097d9 583 SUPERFAMILY SSF52540 367 579 5.22E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26605 83d5096a8f328ed38836728fb43097d9 583 Gene3D G3DSA:3.40.50.300 360 583 1.5E-64 T 11-10-2018 APT56_26605 83d5096a8f328ed38836728fb43097d9 583 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 35 574 5.5E-184 T 11-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 APT56_26605 83d5096a8f328ed38836728fb43097d9 583 Gene3D G3DSA:1.20.1560.10 7 346 7.4E-50 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_26605 83d5096a8f328ed38836728fb43097d9 583 Pfam PF00664 ABC transporter transmembrane region 40 284 4.0E-34 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_26605 83d5096a8f328ed38836728fb43097d9 583 Pfam PF00005 ABC transporter 387 533 7.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_05450 76f4ccbceb2fa39bf471817fc652eca6 346 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 7 344 49.042 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT56_05450 76f4ccbceb2fa39bf471817fc652eca6 346 Pfam PF01180 Dihydroorotate dehydrogenase 53 342 3.4E-87 T 11-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 APT56_05450 76f4ccbceb2fa39bf471817fc652eca6 346 Gene3D G3DSA:3.20.20.70 7 343 7.3E-130 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_05450 76f4ccbceb2fa39bf471817fc652eca6 346 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 8 345 3.1E-123 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APT56_05450 76f4ccbceb2fa39bf471817fc652eca6 346 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 85 104 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 APT56_05450 76f4ccbceb2fa39bf471817fc652eca6 346 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 300 320 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 APT56_05450 76f4ccbceb2fa39bf471817fc652eca6 346 SUPERFAMILY SSF51395 8 343 1.27E-102 T 11-10-2018 APT56_05450 76f4ccbceb2fa39bf471817fc652eca6 346 PIRSF PIRSF000164 16 346 2.4E-95 T 11-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 APT56_00150 f161e95584a2c1ac82358499c5579636 266 Gene3D G3DSA:3.40.50.300 6 266 2.8E-77 T 11-10-2018 APT56_00150 f161e95584a2c1ac82358499c5579636 266 PIRSF PIRSF009320 95 265 3.9E-10 T 11-10-2018 APT56_00150 f161e95584a2c1ac82358499c5579636 266 PIRSF PIRSF009320 10 92 7.5E-14 T 11-10-2018 APT56_00150 f161e95584a2c1ac82358499c5579636 266 Pfam PF13614 AAA domain 11 185 1.0E-64 T 11-10-2018 IPR025669 AAA domain APT56_00150 f161e95584a2c1ac82358499c5579636 266 SUPERFAMILY SSF52540 10 262 1.04E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17045 1a94fa8e2031c856a4536787baefaad1 302 Pfam PF04909 Amidohydrolase 34 301 1.4E-26 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_17045 1a94fa8e2031c856a4536787baefaad1 302 Gene3D G3DSA:3.20.20.140 20 302 1.4E-70 T 11-10-2018 APT56_17045 1a94fa8e2031c856a4536787baefaad1 302 SUPERFAMILY SSF51556 29 302 9.79E-61 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_22975 9b7969313c560e2c270714f42ce07a25 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 2.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_22975 9b7969313c560e2c270714f42ce07a25 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 454 2.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_22975 9b7969313c560e2c270714f42ce07a25 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 2.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_22975 9b7969313c560e2c270714f42ce07a25 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 2.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_22975 9b7969313c560e2c270714f42ce07a25 460 Gene3D G3DSA:3.30.565.10 312 456 7.2E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_22975 9b7969313c560e2c270714f42ce07a25 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 455 3.9E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_22975 9b7969313c560e2c270714f42ce07a25 460 SMART SM00387 350 457 8.7E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_22975 9b7969313c560e2c270714f42ce07a25 460 SUPERFAMILY SSF55874 314 454 2.49E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_26755 3c1429f3cde9a5995a80aeab71a08ae0 349 Gene3D G3DSA:3.30.1370.60 60 277 3.4E-94 T 11-10-2018 APT56_26755 3c1429f3cde9a5995a80aeab71a08ae0 349 SUPERFAMILY SSF89733 1 346 2.22E-98 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 APT56_26755 3c1429f3cde9a5995a80aeab71a08ae0 349 Gene3D G3DSA:1.10.1530.10 13 343 3.4E-94 T 11-10-2018 APT56_26755 3c1429f3cde9a5995a80aeab71a08ae0 349 Pfam PF02615 Malate/L-lactate dehydrogenase 3 335 5.8E-99 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 APT56_26755 3c1429f3cde9a5995a80aeab71a08ae0 349 Gene3D G3DSA:1.20.5.460 278 307 3.4E-94 T 11-10-2018 APT56_19845 ab0f2181f83a5b56322a050af4ebfd06 222 Gene3D G3DSA:2.40.50.90 69 215 1.2E-32 T 11-10-2018 IPR035437 SNase-like, OB-fold superfamily APT56_19845 ab0f2181f83a5b56322a050af4ebfd06 222 ProSitePatterns PS01123 Thermonuclease family signature 1. 81 105 - T 11-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 APT56_19845 ab0f2181f83a5b56322a050af4ebfd06 222 Pfam PF00565 Staphylococcal nuclease homologue 95 201 9.0E-18 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 APT56_19845 ab0f2181f83a5b56322a050af4ebfd06 222 SUPERFAMILY SSF50199 71 209 9.94E-35 T 11-10-2018 APT56_19845 ab0f2181f83a5b56322a050af4ebfd06 222 SMART SM00318 70 202 5.7E-28 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 APT56_04600 c770272376d409bd616dce203b87697b 108 SUPERFAMILY SSF55248 14 96 6.54E-32 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 APT56_04600 c770272376d409bd616dce203b87697b 108 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 1 96 23.288 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 APT56_04600 c770272376d409bd616dce203b87697b 108 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 14 94 4.2E-30 T 11-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 APT56_04600 c770272376d409bd616dce203b87697b 108 Gene3D G3DSA:3.30.1360.20 6 99 8.0E-37 T 11-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 APT56_23375 4024995c10e1b532de03c5b381491aec 764 Pfam PF00390 Malic enzyme, N-terminal domain 20 152 1.4E-25 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT56_23375 4024995c10e1b532de03c5b381491aec 764 Gene3D G3DSA:3.40.50.10950 447 759 4.5E-96 T 11-10-2018 APT56_23375 4024995c10e1b532de03c5b381491aec 764 Gene3D G3DSA:3.40.50.10380 1 161 6.6E-67 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 APT56_23375 4024995c10e1b532de03c5b381491aec 764 Gene3D G3DSA:3.40.50.720 162 443 6.6E-80 T 11-10-2018 APT56_23375 4024995c10e1b532de03c5b381491aec 764 Pfam PF03949 Malic enzyme, NAD binding domain 166 361 1.8E-19 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 APT56_23375 4024995c10e1b532de03c5b381491aec 764 SUPERFAMILY SSF51735 164 439 3.8E-83 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_23375 4024995c10e1b532de03c5b381491aec 764 SMART SM01274 19 152 2.5E-76 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT56_23375 4024995c10e1b532de03c5b381491aec 764 SUPERFAMILY SSF53659 430 761 6.17E-86 T 11-10-2018 APT56_23375 4024995c10e1b532de03c5b381491aec 764 Gene3D G3DSA:3.40.50.10750 578 732 4.5E-96 T 11-10-2018 APT56_23375 4024995c10e1b532de03c5b381491aec 764 PIRSF PIRSF036684 1 763 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 APT56_23375 4024995c10e1b532de03c5b381491aec 764 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 756 2.5E-93 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APT56_23375 4024995c10e1b532de03c5b381491aec 764 SUPERFAMILY SSF53223 11 162 1.65E-51 T 11-10-2018 APT56_23375 4024995c10e1b532de03c5b381491aec 764 SMART SM00919 164 401 9.5E-133 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 SUPERFAMILY SSF52374 9 305 1.05E-111 T 11-10-2018 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 PRINTS PR00987 Glutamyl-tRNA synthetase signature 12 24 5.6E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 PRINTS PR00987 Glutamyl-tRNA synthetase signature 26 37 5.6E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 PRINTS PR00987 Glutamyl-tRNA synthetase signature 189 199 5.6E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 PRINTS PR00987 Glutamyl-tRNA synthetase signature 41 54 5.6E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 PRINTS PR00987 Glutamyl-tRNA synthetase signature 205 213 5.6E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 Gene3D G3DSA:3.40.50.620 7 324 2.7E-137 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 8 468 30.993 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 Gene3D G3DSA:1.10.8.70 396 468 2.2E-13 T 11-10-2018 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 Gene3D G3DSA:1.10.8.70 325 395 1.3E-6 T 11-10-2018 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 SUPERFAMILY SSF48163 309 466 1.2E-37 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 9 466 6.0E-166 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APT56_03405 19b5b73e3c72aa7db86b7c6fc205b695 468 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 9 315 7.8E-105 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 APT56_14545 511f4d41602cb621572516020528320b 377 Pfam PF07995 Glucose / Sorbosone dehydrogenase 39 369 3.3E-141 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase APT56_14545 511f4d41602cb621572516020528320b 377 Gene3D G3DSA:2.120.10.30 26 373 1.0E-138 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_14545 511f4d41602cb621572516020528320b 377 SUPERFAMILY SSF50952 20 373 3.27E-49 T 11-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 APT56_23285 e5cd6114c5ad2113440bef086313c475 505 SUPERFAMILY SSF53474 8 251 3.01E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_23285 e5cd6114c5ad2113440bef086313c475 505 Gene3D G3DSA:3.10.450.50 272 396 1.2E-16 T 11-10-2018 APT56_23285 e5cd6114c5ad2113440bef086313c475 505 Gene3D G3DSA:3.40.50.1820 2 252 2.4E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_23285 e5cd6114c5ad2113440bef086313c475 505 SUPERFAMILY SSF54427 273 393 2.04E-13 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_23285 e5cd6114c5ad2113440bef086313c475 505 Pfam PF00887 Acyl CoA binding protein 424 501 1.3E-9 T 11-10-2018 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 APT56_23285 e5cd6114c5ad2113440bef086313c475 505 Pfam PF12680 SnoaL-like domain 276 379 3.8E-7 T 11-10-2018 IPR037401 SnoaL-like domain APT56_23285 e5cd6114c5ad2113440bef086313c475 505 Gene3D G3DSA:1.20.80.10 416 505 4.8E-12 T 11-10-2018 IPR014352 FERM/acyl-CoA-binding protein superfamily APT56_23285 e5cd6114c5ad2113440bef086313c475 505 SUPERFAMILY SSF47027 421 504 1.23E-12 T 11-10-2018 IPR035984 Acyl-CoA binding protein superfamily GO:0000062 APT56_23285 e5cd6114c5ad2113440bef086313c475 505 Pfam PF12697 Alpha/beta hydrolase family 8 244 5.1E-13 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_22210 943a003122fd3f6fdae2c51847ab366b 386 SUPERFAMILY SSF53822 27 379 7.74E-86 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_22210 943a003122fd3f6fdae2c51847ab366b 386 Pfam PF13458 Periplasmic binding protein 27 364 8.0E-72 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_22210 943a003122fd3f6fdae2c51847ab366b 386 Gene3D G3DSA:3.40.50.2300 144 361 1.0E-110 T 11-10-2018 APT56_22210 943a003122fd3f6fdae2c51847ab366b 386 Gene3D G3DSA:3.40.50.2300 28 355 1.0E-110 T 11-10-2018 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 SUPERFAMILY SSF63380 100 193 3.25E-22 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 145 152 7.9E-20 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 204 223 7.9E-20 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 129 141 7.9E-20 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 294 302 7.9E-20 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 229 238 7.9E-20 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 188 197 7.9E-20 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 Pfam PF00970 Oxidoreductase FAD-binding domain 103 195 5.4E-12 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 Pfam PF00175 Oxidoreductase NAD-binding domain 205 306 2.1E-24 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 129 139 2.0E-11 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 223 2.0E-11 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 241 252 2.0E-11 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 229 238 2.0E-11 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 145 152 2.0E-11 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 294 302 2.0E-11 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 Gene3D G3DSA:2.40.30.10 99 194 1.7E-21 T 11-10-2018 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 80 3.1E-16 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 Gene3D G3DSA:3.40.50.80 196 329 7.7E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 SUPERFAMILY SSF52343 197 328 3.93E-39 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 Gene3D G3DSA:3.10.20.30 1 95 6.3E-27 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_01795 ac9ab0f4472b0c3bc5f802e71c648909 338 SUPERFAMILY SSF54292 1 88 3.15E-27 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.1E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 SUPERFAMILY SSF53850 92 293 1.01E-36 T 11-10-2018 APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 Gene3D G3DSA:3.40.190.10 104 288 3.4E-55 T 11-10-2018 APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 Gene3D G3DSA:3.40.190.10 164 261 3.4E-55 T 11-10-2018 APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 Pfam PF03466 LysR substrate binding domain 90 291 8.0E-34 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 SUPERFAMILY SSF46785 3 83 6.81E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 5.3E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08475 cd475bed4dbda40e5f0598b3065a88a1 306 Gene3D G3DSA:1.10.10.10 7 93 1.2E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13090 93214ceedc72c0dbd7ea5ca2e3446a6a 202 Pfam PF13649 Methyltransferase domain 48 137 6.0E-16 T 11-10-2018 APT56_13090 93214ceedc72c0dbd7ea5ca2e3446a6a 202 Gene3D G3DSA:3.40.50.150 7 198 4.4E-35 T 11-10-2018 APT56_13090 93214ceedc72c0dbd7ea5ca2e3446a6a 202 SUPERFAMILY SSF53335 11 188 5.84E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_17085 468b6f99929cf77e6a6c58f2b2d85d7c 346 Pfam PF04773 FecR protein 128 226 3.5E-18 T 11-10-2018 IPR006860 FecR protein APT56_17085 468b6f99929cf77e6a6c58f2b2d85d7c 346 Gene3D G3DSA:2.60.120.1440 119 263 1.0E-12 T 11-10-2018 APT56_17085 468b6f99929cf77e6a6c58f2b2d85d7c 346 PIRSF PIRSF018266 17 344 3.0E-89 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_17085 468b6f99929cf77e6a6c58f2b2d85d7c 346 Pfam PF16220 Domain of unknown function (DUF4880) 27 68 3.5E-14 T 11-10-2018 IPR032623 FecR, N-terminal APT56_17330 da6ea7541c7e739866e2a51d49db698b 392 Pfam PF02353 Mycolic acid cyclopropane synthetase 117 377 4.6E-95 T 11-10-2018 APT56_17330 da6ea7541c7e739866e2a51d49db698b 392 PIRSF PIRSF003085 18 391 9.0E-122 T 11-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 APT56_17330 da6ea7541c7e739866e2a51d49db698b 392 SUPERFAMILY SSF53335 126 382 3.03E-79 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_17330 da6ea7541c7e739866e2a51d49db698b 392 Gene3D G3DSA:3.40.50.150 126 385 4.9E-99 T 11-10-2018 APT56_19515 df9f0058ead21dc01a5445a5dfe6eef0 333 SUPERFAMILY SSF53807 4 320 3.14E-45 T 11-10-2018 APT56_19515 df9f0058ead21dc01a5445a5dfe6eef0 333 Gene3D G3DSA:3.40.50.1980 1 327 1.5E-72 T 11-10-2018 APT56_19515 df9f0058ead21dc01a5445a5dfe6eef0 333 Pfam PF01497 Periplasmic binding protein 79 260 5.1E-14 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 SUPERFAMILY SSF53822 70 338 1.19E-67 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 SMART SM00354 9 79 1.5E-24 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 11 21 4.3E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 21 31 4.3E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 Gene3D G3DSA:3.40.50.2300 170 299 3.0E-69 T 11-10-2018 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 56 9.5E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 Pfam PF13377 Periplasmic binding protein-like domain 178 335 6.9E-37 T 11-10-2018 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 11-10-2018 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 Gene3D G3DSA:3.40.50.2300 63 315 3.0E-69 T 11-10-2018 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 Gene3D G3DSA:1.10.260.40 2 62 4.3E-23 T 11-10-2018 APT56_21400 1d891cf5ecb9acbdd5e0a83362a371fe 339 SUPERFAMILY SSF47413 10 67 1.18E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_07950 89f62d3bf04969d8d060b76881d901c7 474 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 20 424 8.4E-84 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_07950 89f62d3bf04969d8d060b76881d901c7 474 Gene3D G3DSA:3.40.630.10 20 325 3.3E-86 T 11-10-2018 APT56_07950 89f62d3bf04969d8d060b76881d901c7 474 Pfam PF07687 Peptidase dimerisation domain 190 280 1.3E-4 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_07950 89f62d3bf04969d8d060b76881d901c7 474 Gene3D G3DSA:3.30.70.360 186 303 3.3E-86 T 11-10-2018 APT56_07950 89f62d3bf04969d8d060b76881d901c7 474 PIRSF PIRSF037227 2 474 1.9E-204 T 11-10-2018 IPR017145 Aminobenzoyl-glutamate utilization protein B APT56_07950 89f62d3bf04969d8d060b76881d901c7 474 SUPERFAMILY SSF53187 7 438 6.98E-57 T 11-10-2018 APT56_07950 89f62d3bf04969d8d060b76881d901c7 474 SUPERFAMILY SSF55031 191 294 5.58E-19 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_22105 86fe157151bf89b2fd7168fae174c7c3 422 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 200 211 9.8E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_22105 86fe157151bf89b2fd7168fae174c7c3 422 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 250 267 9.8E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_22105 86fe157151bf89b2fd7168fae174c7c3 422 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 277 290 9.8E-12 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_22105 86fe157151bf89b2fd7168fae174c7c3 422 Gene3D G3DSA:3.40.710.10 140 419 3.1E-67 T 11-10-2018 APT56_22105 86fe157151bf89b2fd7168fae174c7c3 422 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 168 393 3.7E-55 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 APT56_22105 86fe157151bf89b2fd7168fae174c7c3 422 SUPERFAMILY SSF56601 151 407 2.82E-59 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 Pfam PF07690 Major Facilitator Superfamily 15 405 2.0E-49 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 9 479 4.2E-79 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 Gene3D G3DSA:1.20.1250.20 263 489 7.0E-22 T 11-10-2018 APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 Gene3D G3DSA:1.20.1720.10 9 218 9.5E-51 T 11-10-2018 APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 PRINTS PR01036 Tetracycline resistance protein TetB signature 134 158 3.8E-5 T 11-10-2018 APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 PRINTS PR01036 Tetracycline resistance protein TetB signature 12 36 3.8E-5 T 11-10-2018 APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 PRINTS PR01036 Tetracycline resistance protein TetB signature 72 94 3.8E-5 T 11-10-2018 APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 3.8E-5 T 11-10-2018 APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 SUPERFAMILY SSF103473 201 491 2.09E-29 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_18790 6e9ca902bbeb21da731971e5a0b9c42b 497 SUPERFAMILY SSF103473 4 190 2.62E-43 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_02090 0f2a15c6e18f2756d60f8223d2d9b5b5 266 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 16 263 1.3E-77 T 11-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 APT56_02090 0f2a15c6e18f2756d60f8223d2d9b5b5 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 210 224 2.3E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_02090 0f2a15c6e18f2756d60f8223d2d9b5b5 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 2.3E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_02090 0f2a15c6e18f2756d60f8223d2d9b5b5 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 96 109 2.3E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_02090 0f2a15c6e18f2756d60f8223d2d9b5b5 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 2.3E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_02090 0f2a15c6e18f2756d60f8223d2d9b5b5 266 Pfam PF00561 alpha/beta hydrolase fold 36 138 6.0E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_02090 0f2a15c6e18f2756d60f8223d2d9b5b5 266 Gene3D G3DSA:3.40.50.1820 2 263 2.4E-74 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02090 0f2a15c6e18f2756d60f8223d2d9b5b5 266 SUPERFAMILY SSF53474 6 263 2.06E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_25150 62be470ef01492028bca94aac1873fa7 304 Gene3D G3DSA:3.20.20.70 3 294 4.9E-91 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_25150 62be470ef01492028bca94aac1873fa7 304 Pfam PF05853 beta-keto acid cleavage enzyme 5 292 3.1E-88 T 11-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 APT56_07900 86433e6d1f20f99d3b86378561dfd3f2 167 SUPERFAMILY SSF74942 75 158 2.35E-9 T 11-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily APT56_07900 86433e6d1f20f99d3b86378561dfd3f2 167 SUPERFAMILY SSF75420 3 74 3.79E-14 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily APT56_07900 86433e6d1f20f99d3b86378561dfd3f2 167 Pfam PF02576 RimP N-terminal domain 9 74 7.5E-15 T 11-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal APT56_07900 86433e6d1f20f99d3b86378561dfd3f2 167 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 2 160 20.662 T 11-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 APT56_07900 86433e6d1f20f99d3b86378561dfd3f2 167 Pfam PF17384 RimP C-terminal SH3 domain 77 158 1.8E-9 T 11-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal APT56_07900 86433e6d1f20f99d3b86378561dfd3f2 167 Gene3D G3DSA:3.30.300.70 2 71 4.4E-9 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily APT56_24670 5f85fb2192fcd26abbefa1ae4f6bb614 341 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 264 1.6E-55 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_24670 5f85fb2192fcd26abbefa1ae4f6bb614 341 PRINTS PR01713 Nucleotide sugar epimerase signature 45 61 4.3E-8 T 11-10-2018 APT56_24670 5f85fb2192fcd26abbefa1ae4f6bb614 341 PRINTS PR01713 Nucleotide sugar epimerase signature 234 249 4.3E-8 T 11-10-2018 APT56_24670 5f85fb2192fcd26abbefa1ae4f6bb614 341 PRINTS PR01713 Nucleotide sugar epimerase signature 258 273 4.3E-8 T 11-10-2018 APT56_24670 5f85fb2192fcd26abbefa1ae4f6bb614 341 PRINTS PR01713 Nucleotide sugar epimerase signature 302 319 4.3E-8 T 11-10-2018 APT56_24670 5f85fb2192fcd26abbefa1ae4f6bb614 341 SUPERFAMILY SSF51735 16 339 5.67E-85 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_24670 5f85fb2192fcd26abbefa1ae4f6bb614 341 Gene3D G3DSA:3.40.50.720 20 323 5.6E-113 T 11-10-2018 APT56_24670 5f85fb2192fcd26abbefa1ae4f6bb614 341 Gene3D G3DSA:3.90.25.10 194 335 5.6E-113 T 11-10-2018 APT56_13165 63324e555bd59d30f5b014132db21a19 245 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 51 239 3.2E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13165 63324e555bd59d30f5b014132db21a19 245 SUPERFAMILY SSF161098 32 224 7.19E-32 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13165 63324e555bd59d30f5b014132db21a19 245 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 30 133 8.8E-16 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_13165 63324e555bd59d30f5b014132db21a19 245 Gene3D G3DSA:1.10.3720.10 27 240 1.3E-40 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 SUPERFAMILY SSF53850 96 305 1.53E-35 T 11-10-2018 APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 Gene3D G3DSA:3.40.190.10 98 286 5.1E-41 T 11-10-2018 APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 Pfam PF03466 LysR substrate binding domain 93 300 4.0E-34 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 5.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 5.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 5.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 8.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 SUPERFAMILY SSF46785 5 110 6.53E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 Gene3D G3DSA:1.10.10.10 6 94 8.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02860 70dafc8c60b1b6cf755cf93f4fc2dfc6 311 Gene3D G3DSA:3.40.190.10 172 274 5.1E-41 T 11-10-2018 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 113 4.8E-17 T 11-10-2018 IPR000014 PAS domain APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 Gene3D G3DSA:3.30.450.20 11 145 3.9E-27 T 11-10-2018 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 SUPERFAMILY SSF58104 246 527 1.44E-69 T 11-10-2018 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 Gene3D G3DSA:1.10.287.950 226 528 9.4E-83 T 11-10-2018 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 3.9E-56 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 3.9E-56 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 300 329 3.9E-56 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 454 483 3.9E-56 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 Pfam PF00672 HAMP domain 226 274 3.4E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 SMART SM00091 8 74 2.7E-4 T 11-10-2018 IPR000014 PAS domain APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 338 493 4.1E-51 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 SUPERFAMILY SSF55785 20 114 6.63E-29 T 11-10-2018 IPR035965 PAS domain superfamily APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 Pfam PF08447 PAS fold 30 113 9.2E-17 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 SMART SM00304 226 278 1.1E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 SMART SM00283 279 526 4.3E-80 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12055 e93586aded1cb348f3e5f23b37d16286 531 SMART SM00086 80 121 0.0024 T 11-10-2018 IPR001610 PAC motif APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 168 5.6E-60 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 SUPERFAMILY SSF52467 187 361 4.91E-63 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 3 565 5.0E-247 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 541 9.7E-48 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 SUPERFAMILY SSF52518 2 175 1.05E-64 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 Gene3D G3DSA:3.40.50.970 363 570 3.4E-64 T 11-10-2018 APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 Gene3D G3DSA:3.40.50.1220 187 359 2.0E-60 T 11-10-2018 APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 330 6.9E-45 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 SUPERFAMILY SSF52518 371 566 1.79E-66 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_05875 8db8651840b11665a0f134b7c656f2aa 571 Gene3D G3DSA:3.40.50.970 1 178 4.0E-72 T 11-10-2018 APT56_26845 811c265a42d53fde2df6b4dc5153aae8 387 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 67 85 5.8E-11 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_26845 811c265a42d53fde2df6b4dc5153aae8 387 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 285 298 5.8E-11 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_26845 811c265a42d53fde2df6b4dc5153aae8 387 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 5.8E-11 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_26845 811c265a42d53fde2df6b4dc5153aae8 387 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 5.8E-11 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_26845 811c265a42d53fde2df6b4dc5153aae8 387 Pfam PF13458 Periplasmic binding protein 25 381 1.7E-70 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_26845 811c265a42d53fde2df6b4dc5153aae8 387 Gene3D G3DSA:3.40.50.2300 151 279 2.4E-84 T 11-10-2018 APT56_26845 811c265a42d53fde2df6b4dc5153aae8 387 SUPERFAMILY SSF53822 25 385 4.71E-88 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_26845 811c265a42d53fde2df6b4dc5153aae8 387 Gene3D G3DSA:3.40.50.2300 27 353 2.4E-84 T 11-10-2018 APT56_11660 1bf82682fb9dbf8ae613e0bc355df0dd 330 Gene3D G3DSA:3.30.420.380 21 154 5.9E-11 T 11-10-2018 APT56_11660 1bf82682fb9dbf8ae613e0bc355df0dd 330 SUPERFAMILY SSF53067 16 142 2.33E-12 T 11-10-2018 APT56_11660 1bf82682fb9dbf8ae613e0bc355df0dd 330 Pfam PF12693 GspL periplasmic domain 176 318 1.8E-19 T 11-10-2018 IPR025691 GspL periplasmic domain APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 Gene3D G3DSA:1.10.10.10 11 96 1.5E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 5.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 5.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 5.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 SUPERFAMILY SSF46785 9 108 1.98E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 Gene3D G3DSA:3.40.190.290 104 313 6.0E-23 T 11-10-2018 APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 5.9E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 SUPERFAMILY SSF53850 102 311 9.87E-35 T 11-10-2018 APT56_17350 72dcfa0db08534f5bbaf089d07909786 325 Pfam PF03466 LysR substrate binding domain 102 306 5.3E-31 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 SUPERFAMILY SSF46689 418 499 1.39E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 Gene3D G3DSA:1.10.10.60 415 499 1.1E-16 T 11-10-2018 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 Gene3D G3DSA:3.40.50.300 129 311 1.6E-62 T 11-10-2018 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 SMART SM00448 2 113 1.6E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 Gene3D G3DSA:1.10.8.60 312 391 2.5E-21 T 11-10-2018 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 SUPERFAMILY SSF52172 2 185 6.97E-40 T 11-10-2018 IPR011006 CheY-like superfamily APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 Pfam PF02954 Bacterial regulatory protein, Fis family 457 496 2.9E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 4 390 1.0E-185 T 11-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 462 479 1.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 479 499 1.4E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 Pfam PF00158 Sigma-54 interaction domain 144 307 1.9E-67 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 SMART SM00382 161 304 4.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 Pfam PF00072 Response regulator receiver domain 4 113 9.4E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 Gene3D G3DSA:3.40.50.2300 1 121 1.0E-34 T 11-10-2018 APT56_14810 1f50e6db5059781702a4bb22f98c318b 501 SUPERFAMILY SSF52540 145 384 7.92E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02540 32238a9dae337fe344d579214b04493f 241 SUPERFAMILY SSF48008 86 220 4.18E-15 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_02540 32238a9dae337fe344d579214b04493f 241 SUPERFAMILY SSF46785 13 83 6.75E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02540 32238a9dae337fe344d579214b04493f 241 Gene3D G3DSA:1.10.10.10 21 80 3.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02540 32238a9dae337fe344d579214b04493f 241 Pfam PF07729 FCD domain 90 210 1.9E-14 T 11-10-2018 IPR011711 GntR, C-terminal APT56_02540 32238a9dae337fe344d579214b04493f 241 SMART SM00345 21 79 3.6E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02540 32238a9dae337fe344d579214b04493f 241 SMART SM00895 89 214 1.9E-10 T 11-10-2018 IPR011711 GntR, C-terminal APT56_02540 32238a9dae337fe344d579214b04493f 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 7.1E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02540 32238a9dae337fe344d579214b04493f 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 7.1E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02540 32238a9dae337fe344d579214b04493f 241 Gene3D G3DSA:1.20.120.530 83 221 1.7E-16 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_02540 32238a9dae337fe344d579214b04493f 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 79 5.0E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_00250 9fe3bd83472eb8c7d720f1877fc959d7 304 Gene3D G3DSA:3.60.130.10 23 304 5.5E-85 T 11-10-2018 APT56_00250 9fe3bd83472eb8c7d720f1877fc959d7 304 SUPERFAMILY SSF51197 24 304 5.95E-85 T 11-10-2018 APT56_00250 9fe3bd83472eb8c7d720f1877fc959d7 304 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 26 297 2.9E-64 T 11-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 473 19.595 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 Pfam PF03023 MviN-like protein 28 468 5.6E-131 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 PRINTS PR01806 Virulence factor MviN signature 159 180 7.0E-77 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 PRINTS PR01806 Virulence factor MviN signature 415 432 7.0E-77 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 PRINTS PR01806 Virulence factor MviN signature 363 382 7.0E-77 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 PRINTS PR01806 Virulence factor MviN signature 33 52 7.0E-77 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 PRINTS PR01806 Virulence factor MviN signature 265 291 7.0E-77 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 PRINTS PR01806 Virulence factor MviN signature 135 159 7.0E-77 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 PRINTS PR01806 Virulence factor MviN signature 52 68 7.0E-77 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 PIRSF PIRSF002869 1 519 5.3E-149 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_18285 e72fc5195e3bc11a557fd8571e8873ad 519 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 508 7.1E-141 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APT56_21460 9e4e79b2145b868f01eded7e28855991 594 Pfam PF00916 Sulfate permease family 25 398 9.6E-80 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 APT56_21460 9e4e79b2145b868f01eded7e28855991 594 Pfam PF01740 STAS domain 457 561 3.2E-11 T 11-10-2018 IPR002645 STAS domain APT56_21460 9e4e79b2145b868f01eded7e28855991 594 Gene3D G3DSA:3.30.750.24 447 570 8.4E-23 T 11-10-2018 IPR036513 STAS domain superfamily APT56_21460 9e4e79b2145b868f01eded7e28855991 594 SUPERFAMILY SSF52091 455 565 1.41E-14 T 11-10-2018 IPR036513 STAS domain superfamily APT56_13635 547ab340f7323f1619574b2a2fb30d5a 167 Pfam PF08281 Sigma-70, region 4 105 152 5.2E-13 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_13635 547ab340f7323f1619574b2a2fb30d5a 167 Gene3D G3DSA:1.10.10.10 84 163 2.0E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13635 547ab340f7323f1619574b2a2fb30d5a 167 SUPERFAMILY SSF88946 11 71 5.1E-9 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_13635 547ab340f7323f1619574b2a2fb30d5a 167 Pfam PF04542 Sigma-70 region 2 13 73 3.3E-8 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_13635 547ab340f7323f1619574b2a2fb30d5a 167 SUPERFAMILY SSF88659 72 163 5.98E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_13635 547ab340f7323f1619574b2a2fb30d5a 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 161 4.8E-18 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 Pfam PF03466 LysR substrate binding domain 88 294 4.0E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 Gene3D G3DSA:3.40.190.290 90 294 1.4E-24 T 11-10-2018 APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 SUPERFAMILY SSF53850 89 295 3.01E-28 T 11-10-2018 APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 Gene3D G3DSA:1.10.10.10 1 88 1.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17340 fcad2a79c92c5a03ff5a7854292036ad 295 SUPERFAMILY SSF46785 1 82 7.62E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05700 c23907130f769403d45369cb96ae19f5 719 SUPERFAMILY SSF56784 332 596 2.78E-36 T 11-10-2018 IPR036412 HAD-like superfamily APT56_05700 c23907130f769403d45369cb96ae19f5 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 187 201 2.1E-25 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 478 489 2.1E-25 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 553 572 2.1E-25 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 344 358 2.1E-25 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 576 588 2.1E-25 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 500 510 2.1E-25 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 30 717 40.472 T 11-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 APT56_05700 c23907130f769403d45369cb96ae19f5 719 SUPERFAMILY SSF81653 151 240 3.66E-17 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 APT56_05700 c23907130f769403d45369cb96ae19f5 719 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 32 713 0.0 T 11-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 APT56_05700 c23907130f769403d45369cb96ae19f5 719 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 403 639 1.2E-45 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_05700 c23907130f769403d45369cb96ae19f5 719 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 145 365 3.7E-26 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_05700 c23907130f769403d45369cb96ae19f5 719 Pfam PF00122 E1-E2 ATPase 155 322 4.1E-28 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 SUPERFAMILY SSF81665 51 338 6.28E-12 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 APT56_05700 c23907130f769403d45369cb96ae19f5 719 Pfam PF00702 haloacid dehalogenase-like hydrolase 340 567 1.5E-32 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 Gene3D G3DSA:3.40.1110.10 356 487 1.3E-46 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT56_05700 c23907130f769403d45369cb96ae19f5 719 Gene3D G3DSA:2.70.150.20 137 245 3.4E-23 T 11-10-2018 APT56_05700 c23907130f769403d45369cb96ae19f5 719 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 346 352 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT56_06660 98685dede6b065bb983efa6738485e6c 266 Pfam PF00175 Oxidoreductase NAD-binding domain 121 241 1.0E-8 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_06660 98685dede6b065bb983efa6738485e6c 266 SUPERFAMILY SSF63380 7 108 2.15E-20 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_06660 98685dede6b065bb983efa6738485e6c 266 SUPERFAMILY SSF52343 113 266 2.88E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_06660 98685dede6b065bb983efa6738485e6c 266 Gene3D G3DSA:2.40.30.10 1 104 9.1E-26 T 11-10-2018 APT56_06660 98685dede6b065bb983efa6738485e6c 266 PRINTS PR00410 Phenol hydroxylase reductase family signature 120 139 7.0E-8 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_06660 98685dede6b065bb983efa6738485e6c 266 PRINTS PR00410 Phenol hydroxylase reductase family signature 36 48 7.0E-8 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_06660 98685dede6b065bb983efa6738485e6c 266 PRINTS PR00410 Phenol hydroxylase reductase family signature 145 154 7.0E-8 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_06660 98685dede6b065bb983efa6738485e6c 266 Gene3D G3DSA:3.40.50.80 106 266 1.2E-35 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 SUPERFAMILY SSF51246 331 402 9.73E-17 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 19 403 6.1E-172 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 Gene3D G3DSA:3.40.50.20 7 128 4.0E-51 T 11-10-2018 APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 Gene3D G3DSA:3.30.470.20 204 404 1.8E-62 T 11-10-2018 APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 Pfam PF01370 NAD dependent epimerase/dehydratase family 24 86 5.2E-5 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 Pfam PF02222 ATP-grasp domain 129 306 4.4E-52 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 13 403 50.545 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 Gene3D G3DSA:3.30.1490.20 129 203 9.4E-32 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 SUPERFAMILY SSF52440 8 118 3.31E-31 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_26630 8cc355d05c0e5b10e7c7e951db3c49a2 405 SUPERFAMILY SSF56059 119 325 4.42E-56 T 11-10-2018 APT56_18395 429dc7e151a3a2b29b6fcead14c7ea07 267 SUPERFAMILY SSF56529 2 266 3.14E-76 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_18395 429dc7e151a3a2b29b6fcead14c7ea07 267 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 86 264 1.2E-7 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_18395 429dc7e151a3a2b29b6fcead14c7ea07 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 266 5.2E-134 T 11-10-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 APT56_18395 429dc7e151a3a2b29b6fcead14c7ea07 267 Gene3D G3DSA:3.90.850.10 1 267 1.2E-78 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_04850 236ee2cf99f49022c4950674608478e4 318 SUPERFAMILY SSF52540 10 152 1.27E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04850 236ee2cf99f49022c4950674608478e4 318 Gene3D G3DSA:3.40.50.300 13 291 5.0E-96 T 11-10-2018 APT56_04850 236ee2cf99f49022c4950674608478e4 318 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 9 312 29.324 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APT56_04850 236ee2cf99f49022c4950674608478e4 318 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 9 293 1.3E-91 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APT56_04850 236ee2cf99f49022c4950674608478e4 318 Pfam PF01715 IPP transferase 43 291 4.8E-87 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APT56_04850 236ee2cf99f49022c4950674608478e4 318 Gene3D G3DSA:1.10.20.140 116 187 5.0E-96 T 11-10-2018 APT56_16545 90e15987945c1a49834d5feb364f2978 438 Pfam PF00034 Cytochrome c 187 296 2.4E-4 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_16545 90e15987945c1a49834d5feb364f2978 438 Pfam PF00034 Cytochrome c 35 131 2.2E-4 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_16545 90e15987945c1a49834d5feb364f2978 438 PRINTS PR00605 Class IC cytochrome C signature 385 407 3.3E-6 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT56_16545 90e15987945c1a49834d5feb364f2978 438 PRINTS PR00605 Class IC cytochrome C signature 332 343 3.3E-6 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT56_16545 90e15987945c1a49834d5feb364f2978 438 Gene3D G3DSA:1.10.760.10 173 296 6.7E-10 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16545 90e15987945c1a49834d5feb364f2978 438 Gene3D G3DSA:1.10.760.10 303 437 3.6E-34 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16545 90e15987945c1a49834d5feb364f2978 438 SUPERFAMILY SSF46626 325 428 1.69E-23 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16545 90e15987945c1a49834d5feb364f2978 438 PIRSF PIRSF000018 1 437 3.8E-162 T 11-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 APT56_16545 90e15987945c1a49834d5feb364f2978 438 Gene3D G3DSA:1.10.760.10 2 138 2.0E-10 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16545 90e15987945c1a49834d5feb364f2978 438 SUPERFAMILY SSF46626 186 296 1.53E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_16545 90e15987945c1a49834d5feb364f2978 438 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 323 407 6.2E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_16545 90e15987945c1a49834d5feb364f2978 438 SUPERFAMILY SSF46626 25 155 2.61E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_15825 b88ac9912948451a735ceb43d51cd978 655 SMART SM00382 398 591 1.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15825 b88ac9912948451a735ceb43d51cd978 655 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 311 3.6E-27 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_15825 b88ac9912948451a735ceb43d51cd978 655 Pfam PF00005 ABC transporter 389 542 7.1E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15825 b88ac9912948451a735ceb43d51cd978 655 ProSitePatterns PS00211 ABC transporters family signature. 514 528 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15825 b88ac9912948451a735ceb43d51cd978 655 Gene3D G3DSA:3.40.50.300 375 652 3.4E-57 T 11-10-2018 APT56_15825 b88ac9912948451a735ceb43d51cd978 655 SUPERFAMILY SSF52540 374 605 3.38E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26230 0e64ccdc1c7c306d726b29e58582afd6 325 Gene3D G3DSA:3.90.25.10 177 314 6.7E-122 T 11-10-2018 APT56_26230 0e64ccdc1c7c306d726b29e58582afd6 325 Gene3D G3DSA:3.40.50.720 8 304 6.7E-122 T 11-10-2018 APT56_26230 0e64ccdc1c7c306d726b29e58582afd6 325 SUPERFAMILY SSF51735 1 319 4.03E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26230 0e64ccdc1c7c306d726b29e58582afd6 325 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 205 3.6E-24 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_02710 e3cd9152cfea21fefdd62ddcf1187dcf 277 SUPERFAMILY SSF53850 9 256 1.19E-22 T 11-10-2018 APT56_02710 e3cd9152cfea21fefdd62ddcf1187dcf 277 Gene3D G3DSA:3.40.190.10 143 229 1.1E-11 T 11-10-2018 APT56_02710 e3cd9152cfea21fefdd62ddcf1187dcf 277 Gene3D G3DSA:3.40.190.10 32 142 2.3E-13 T 11-10-2018 APT56_02710 e3cd9152cfea21fefdd62ddcf1187dcf 277 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 45 262 3.1E-14 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_22005 5b91ee50118a54fbc8ebcf484e2bdf95 346 Pfam PF13379 NMT1-like family 33 271 6.7E-29 T 11-10-2018 APT56_22005 5b91ee50118a54fbc8ebcf484e2bdf95 346 Gene3D G3DSA:3.40.190.10 116 226 9.4E-126 T 11-10-2018 APT56_22005 5b91ee50118a54fbc8ebcf484e2bdf95 346 SMART SM00062 34 263 0.0095 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_22005 5b91ee50118a54fbc8ebcf484e2bdf95 346 SUPERFAMILY SSF53850 33 282 8.62E-45 T 11-10-2018 APT56_22005 5b91ee50118a54fbc8ebcf484e2bdf95 346 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 19 0.001 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APT56_22005 5b91ee50118a54fbc8ebcf484e2bdf95 346 Gene3D G3DSA:3.40.190.10 37 335 9.4E-126 T 11-10-2018 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 Gene3D G3DSA:2.102.10.10 37 168 1.7E-99 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 SUPERFAMILY SSF50022 12 155 6.15E-44 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 SUPERFAMILY SSF55961 159 436 7.54E-54 T 11-10-2018 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 24 49 1.5E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 185 207 1.5E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 143 169 1.5E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 54 69 1.5E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 75 95 1.5E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 97 117 1.5E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 Pfam PF00355 Rieske [2Fe-2S] domain 40 124 4.0E-19 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 Gene3D G3DSA:3.90.380.10 23 426 1.7E-99 T 11-10-2018 APT56_03110 1a6e00e6f91d9e2d989d62c1b1ba57a5 447 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 197 431 2.2E-9 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 APT56_25360 c5a5a0af25d82eaf61c09131cbeadd77 236 Gene3D G3DSA:3.40.50.300 1 225 1.2E-58 T 11-10-2018 APT56_25360 c5a5a0af25d82eaf61c09131cbeadd77 236 Pfam PF00005 ABC transporter 17 161 2.8E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_25360 c5a5a0af25d82eaf61c09131cbeadd77 236 SUPERFAMILY SSF52540 2 219 1.04E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25360 c5a5a0af25d82eaf61c09131cbeadd77 236 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_25360 c5a5a0af25d82eaf61c09131cbeadd77 236 SMART SM00382 26 209 1.2E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00530 c86082804664e1c25a4bb2d9123f074e 426 SUPERFAMILY SSF51556 52 371 1.12E-109 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_00530 c86082804664e1c25a4bb2d9123f074e 426 Gene3D G3DSA:3.20.20.140 53 360 8.4E-161 T 11-10-2018 APT56_00530 c86082804664e1c25a4bb2d9123f074e 426 SUPERFAMILY SSF51338 1 407 1.04E-13 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_00530 c86082804664e1c25a4bb2d9123f074e 426 Pfam PF07969 Amidohydrolase family 40 400 1.0E-50 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_00530 c86082804664e1c25a4bb2d9123f074e 426 Gene3D G3DSA:2.30.40.10 8 405 8.4E-161 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 Pfam PF08402 TOBE domain 293 373 8.6E-15 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 SUPERFAMILY SSF50331 251 372 3.91E-14 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 48 373 1.8E-123 T 11-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 Pfam PF00005 ABC transporter 34 175 4.8E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 Gene3D G3DSA:3.40.50.300 18 235 6.2E-67 T 11-10-2018 APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 SUPERFAMILY SSF52540 18 257 5.08E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 Gene3D G3DSA:2.40.50.940 236 299 9.8E-11 T 11-10-2018 APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 Gene3D G3DSA:2.40.50.140 300 338 9.8E-11 T 11-10-2018 APT56_08975 65f24e192f64879bc2804e3d53532fe0 375 SMART SM00382 42 227 1.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_12770 c22704df1fe338c4ffe27c3f71d492b0 158 SUPERFAMILY SSF51316 33 157 2.67E-56 T 11-10-2018 IPR011057 Mss4-like superfamily APT56_12770 c22704df1fe338c4ffe27c3f71d492b0 158 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 35 157 5.0E-52 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT56_12770 c22704df1fe338c4ffe27c3f71d492b0 158 Gene3D G3DSA:2.170.150.20 20 158 4.9E-57 T 11-10-2018 APT56_12770 c22704df1fe338c4ffe27c3f71d492b0 158 Pfam PF01641 SelR domain 38 156 2.1E-50 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 SUPERFAMILY SSF52172 15 150 5.41E-29 T 11-10-2018 IPR011006 CheY-like superfamily APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 Gene3D G3DSA:3.30.70.270 155 335 3.7E-60 T 11-10-2018 APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 SUPERFAMILY SSF55073 175 333 1.1E-49 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 Gene3D G3DSA:3.40.50.2300 9 154 9.1E-30 T 11-10-2018 APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 SMART SM00267 159 335 1.4E-59 T 11-10-2018 IPR000160 GGDEF domain APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 Pfam PF00990 Diguanylate cyclase, GGDEF domain 171 331 1.5E-47 T 11-10-2018 IPR000160 GGDEF domain APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 SMART SM00448 18 132 1.3E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 Pfam PF00072 Response regulator receiver domain 20 132 1.5E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_16455 079c4ca44b08b8639349845aed3db0d4 347 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 167 333 3.1E-51 T 11-10-2018 IPR000160 GGDEF domain APT56_02780 e83704bcec3b6ffd694bb7bc2739a5e5 302 PIRSF PIRSF003097 2 302 1.8E-54 T 11-10-2018 IPR004513 Cell division protein FtsX GO:0016021 APT56_02780 e83704bcec3b6ffd694bb7bc2739a5e5 302 Pfam PF02687 FtsX-like permease family 206 299 6.7E-6 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 Gene3D G3DSA:3.40.47.10 127 389 7.4E-138 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 391 2.4E-123 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 PIRSF PIRSF000429 1 393 1.1E-109 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 SUPERFAMILY SSF53901 271 392 1.22E-40 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 SUPERFAMILY SSF53901 5 269 7.46E-76 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 Pfam PF00108 Thiolase, N-terminal domain 5 263 1.4E-82 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 4.8E-42 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 APT56_19055 54c120eccc8727faf834e93f9b16fe10 393 Gene3D G3DSA:3.40.47.10 6 276 7.4E-138 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_04085 f044bfa970e9e9002d5d364048415208 347 Pfam PF01032 FecCD transport family 30 343 3.1E-84 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APT56_04085 f044bfa970e9e9002d5d364048415208 347 Gene3D G3DSA:1.10.3470.10 16 346 3.4E-95 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_04085 f044bfa970e9e9002d5d364048415208 347 SUPERFAMILY SSF81345 11 343 1.11E-78 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_27505 2d87dde35404e81ee98f8d26fd3f117b 372 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 8 101 2.9E-15 T 11-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 APT56_27505 2d87dde35404e81ee98f8d26fd3f117b 372 SUPERFAMILY SSF51735 6 178 3.42E-21 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_27505 2d87dde35404e81ee98f8d26fd3f117b 372 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 123 343 1.0E-14 T 11-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 APT56_27505 2d87dde35404e81ee98f8d26fd3f117b 372 SUPERFAMILY SSF55347 124 360 2.68E-60 T 11-10-2018 APT56_27505 2d87dde35404e81ee98f8d26fd3f117b 372 Gene3D G3DSA:3.30.360.10 124 311 7.7E-64 T 11-10-2018 APT56_27505 2d87dde35404e81ee98f8d26fd3f117b 372 Gene3D G3DSA:3.40.50.720 8 347 7.7E-64 T 11-10-2018 APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 495 521 0.0014 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 267 7.9E-7 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 ProSitePatterns PS00211 ABC transporters family signature. 416 430 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 SUPERFAMILY SSF52540 274 515 9.92E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 Pfam PF00005 ABC transporter 293 443 1.9E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 SUPERFAMILY SSF52540 5 253 4.83E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 Gene3D G3DSA:3.40.50.300 1 272 6.4E-84 T 11-10-2018 APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 Gene3D G3DSA:3.40.50.300 273 543 2.0E-85 T 11-10-2018 APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 SMART SM00382 302 501 9.0E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 SMART SM00382 31 231 1.5E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_12635 802d823eab9d33edd5894e15cb2d955f 543 Pfam PF00005 ABC transporter 24 181 1.1E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_24685 d8a17c7773053205e5ef3bf01aeb0a74 225 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 65 225 1.3E-42 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 APT56_24685 d8a17c7773053205e5ef3bf01aeb0a74 225 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 24 225 31.55 T 11-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 APT56_24685 d8a17c7773053205e5ef3bf01aeb0a74 225 SUPERFAMILY SSF47240 64 198 3.54E-17 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_05135 fd5208b1c4e354518c157b3784b2b432 164 SMART SM00347 39 139 4.5E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_05135 fd5208b1c4e354518c157b3784b2b432 164 Gene3D G3DSA:1.10.10.10 11 153 4.2E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05135 fd5208b1c4e354518c157b3784b2b432 164 Pfam PF12802 MarR family 45 103 3.5E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_05135 fd5208b1c4e354518c157b3784b2b432 164 SUPERFAMILY SSF46785 18 151 1.41E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05135 fd5208b1c4e354518c157b3784b2b432 164 ProSitePatterns PS01117 MarR-type HTH domain signature. 78 112 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_05135 fd5208b1c4e354518c157b3784b2b432 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 95 8.0E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_05135 fd5208b1c4e354518c157b3784b2b432 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 129 149 8.0E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_05135 fd5208b1c4e354518c157b3784b2b432 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 115 8.0E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_20630 dbc08d1b537898c6264eb8d54f80904b 247 Pfam PF06551 Protein of unknown function (DUF1120) 38 108 2.2E-7 T 11-10-2018 IPR010546 Protein of unknown function DUF1120 APT56_06795 a892271b42322c69dd77fad38fe8ef6f 79 Gene3D G3DSA:1.10.1200.10 1 79 1.8E-30 T 11-10-2018 IPR036736 ACP-like superfamily APT56_06795 a892271b42322c69dd77fad38fe8ef6f 79 Pfam PF00550 Phosphopantetheine attachment site 6 73 1.7E-17 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APT56_06795 a892271b42322c69dd77fad38fe8ef6f 79 SUPERFAMILY SSF47336 2 76 1.44E-23 T 11-10-2018 IPR036736 ACP-like superfamily APT56_06795 a892271b42322c69dd77fad38fe8ef6f 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site APT56_06795 a892271b42322c69dd77fad38fe8ef6f 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 0.004 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 APT56_06795 a892271b42322c69dd77fad38fe8ef6f 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.547 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 APT56_06795 a892271b42322c69dd77fad38fe8ef6f 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 1.7E-35 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 APT56_08430 56616129b3be7407ad22bdb66a5b2ea7 469 SUPERFAMILY SSF55103 229 469 1.21E-73 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_08430 56616129b3be7407ad22bdb66a5b2ea7 469 Gene3D G3DSA:3.30.465.40 25 243 4.0E-75 T 11-10-2018 APT56_08430 56616129b3be7407ad22bdb66a5b2ea7 469 Gene3D G3DSA:1.10.45.10 427 467 2.2E-15 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT56_08430 56616129b3be7407ad22bdb66a5b2ea7 469 Pfam PF01565 FAD binding domain 52 188 2.5E-40 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_08430 56616129b3be7407ad22bdb66a5b2ea7 469 Pfam PF02913 FAD linked oxidases, C-terminal domain 226 466 5.6E-69 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_08430 56616129b3be7407ad22bdb66a5b2ea7 469 SUPERFAMILY SSF56176 13 226 2.71E-71 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_08430 56616129b3be7407ad22bdb66a5b2ea7 469 Gene3D G3DSA:3.30.70.2740 345 426 1.7E-11 T 11-10-2018 APT56_20030 39261bee7b28a886b935d069866aa56d 399 SUPERFAMILY SSF53901 7 276 1.04E-70 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20030 39261bee7b28a886b935d069866aa56d 399 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 397 1.1E-136 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_20030 39261bee7b28a886b935d069866aa56d 399 SUPERFAMILY SSF53901 278 397 4.21E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20030 39261bee7b28a886b935d069866aa56d 399 Pfam PF02803 Thiolase, C-terminal domain 277 397 9.9E-45 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_20030 39261bee7b28a886b935d069866aa56d 399 Gene3D G3DSA:3.40.47.10 10 282 1.2E-139 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20030 39261bee7b28a886b935d069866aa56d 399 ProSitePatterns PS00099 Thiolases active site. 380 393 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 APT56_20030 39261bee7b28a886b935d069866aa56d 399 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 90 108 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 APT56_20030 39261bee7b28a886b935d069866aa56d 399 PIRSF PIRSF000429 2 399 1.7E-125 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_20030 39261bee7b28a886b935d069866aa56d 399 ProSitePatterns PS00737 Thiolases signature 2. 345 361 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 APT56_20030 39261bee7b28a886b935d069866aa56d 399 Gene3D G3DSA:3.40.47.10 132 395 1.2E-139 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20030 39261bee7b28a886b935d069866aa56d 399 Pfam PF00108 Thiolase, N-terminal domain 9 268 2.1E-69 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_22140 cc45d146a2068a03599b5b253dba8540 560 Gene3D G3DSA:3.40.50.970 1 180 1.5E-60 T 11-10-2018 APT56_22140 cc45d146a2068a03599b5b253dba8540 560 SUPERFAMILY SSF52518 367 544 6.79E-61 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_22140 cc45d146a2068a03599b5b253dba8540 560 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 329 3.5E-25 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT56_22140 cc45d146a2068a03599b5b253dba8540 560 SUPERFAMILY SSF52518 9 180 9.97E-52 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_22140 cc45d146a2068a03599b5b253dba8540 560 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 173 8.4E-53 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_22140 cc45d146a2068a03599b5b253dba8540 560 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 389 535 6.7E-45 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_22140 cc45d146a2068a03599b5b253dba8540 560 Gene3D G3DSA:3.40.50.970 356 558 1.8E-60 T 11-10-2018 APT56_22140 cc45d146a2068a03599b5b253dba8540 560 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 425 444 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APT56_22140 cc45d146a2068a03599b5b253dba8540 560 Gene3D G3DSA:3.40.50.1220 187 355 4.1E-33 T 11-10-2018 APT56_22140 cc45d146a2068a03599b5b253dba8540 560 SUPERFAMILY SSF52467 158 358 2.57E-36 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_20950 5579f496db03edb585b8a721964e03c8 195 Gene3D G3DSA:3.30.460.10 26 191 4.0E-45 T 11-10-2018 APT56_20950 5579f496db03edb585b8a721964e03c8 195 SUPERFAMILY SSF81301 32 189 2.98E-43 T 11-10-2018 APT56_20950 5579f496db03edb585b8a721964e03c8 195 Pfam PF04229 GrpB protein 29 186 1.8E-50 T 11-10-2018 IPR007344 GrpB/Dephospho-CoA kinase APT56_05625 727260755d5ca28406398e3cb4b69f91 185 Pfam PF00583 Acetyltransferase (GNAT) family 43 150 8.9E-16 T 11-10-2018 IPR000182 GNAT domain APT56_05625 727260755d5ca28406398e3cb4b69f91 185 SUPERFAMILY SSF55729 21 177 5.32E-30 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_05625 727260755d5ca28406398e3cb4b69f91 185 Gene3D G3DSA:3.40.630.30 9 185 3.2E-49 T 11-10-2018 APT56_06780 a7a5226a3f5a7edaa3376414c4ce2453 328 Gene3D G3DSA:3.40.47.10 4 328 3.1E-126 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_06780 a7a5226a3f5a7edaa3376414c4ce2453 328 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 239 327 6.0E-34 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT56_06780 a7a5226a3f5a7edaa3376414c4ce2453 328 SUPERFAMILY SSF53901 5 327 1.92E-67 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_06780 a7a5226a3f5a7edaa3376414c4ce2453 328 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 116 193 4.5E-35 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT56_06780 a7a5226a3f5a7edaa3376414c4ce2453 328 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 7 328 1.5E-120 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT56_06780 a7a5226a3f5a7edaa3376414c4ce2453 328 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 6 328 68.728 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Gene3D G3DSA:1.10.1240.10 668 760 1.7E-37 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Pfam PF02607 B12 binding domain 679 755 2.7E-25 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 SUPERFAMILY SSF82282 19 410 1.1E-114 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Pfam PF02310 B12 binding domain 778 871 2.5E-18 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 PIRSF PIRSF000381 14 1229 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 SUPERFAMILY SSF52242 772 927 1.83E-42 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 SUPERFAMILY SSF51717 367 635 3.01E-87 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Gene3D G3DSA:1.10.288.10 969 1127 2.4E-134 T 11-10-2018 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Gene3D G3DSA:3.40.50.280 773 928 4.2E-54 T 11-10-2018 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 970 1241 3.9E-116 T 11-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Gene3D G3DSA:3.20.20.330 15 351 3.4E-122 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Pfam PF02574 Homocysteine S-methyltransferase 28 336 2.9E-77 T 11-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Pfam PF00809 Pterin binding enzyme 371 609 6.1E-57 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Gene3D G3DSA:3.20.20.20 352 664 2.4E-124 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 TIGRFAM TIGR02082 metH: methionine synthase 24 1226 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 SUPERFAMILY SSF56507 935 1256 2.49E-121 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 SMART SM01018 676 763 6.8E-42 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 Gene3D G3DSA:3.10.196.10 940 1257 2.4E-134 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_02695 2526e8c599db6c990df5c5432e85d834 1257 SUPERFAMILY SSF47644 671 762 3.27E-26 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 Gene3D G3DSA:3.40.190.10 164 263 7.6E-61 T 11-10-2018 APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 16 27 1.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 48 1.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 37 1.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 Gene3D G3DSA:1.10.10.10 1 81 2.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 SUPERFAMILY SSF53850 83 290 9.41E-41 T 11-10-2018 APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 SUPERFAMILY SSF46785 1 78 1.03E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 59 1.5E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 Pfam PF03466 LysR substrate binding domain 88 291 1.5E-23 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_00435 0b7ccc75d1efce404d846e30241df7eb 293 Gene3D G3DSA:3.40.190.10 83 286 7.6E-61 T 11-10-2018 APT56_16580 c7c336f8d5e709fd811dba173431541b 163 Pfam PF00583 Acetyltransferase (GNAT) family 30 141 7.2E-14 T 11-10-2018 IPR000182 GNAT domain APT56_16580 c7c336f8d5e709fd811dba173431541b 163 Gene3D G3DSA:3.40.630.30 1 163 3.2E-40 T 11-10-2018 APT56_16580 c7c336f8d5e709fd811dba173431541b 163 SUPERFAMILY SSF55729 1 163 2.03E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_07460 f98a264f7dd9e50878393a0aebc7019f 491 SUPERFAMILY SSF56801 17 481 2.88E-98 T 11-10-2018 APT56_07460 f98a264f7dd9e50878393a0aebc7019f 491 Gene3D G3DSA:3.40.50.12780 10 369 2.1E-83 T 11-10-2018 APT56_07460 f98a264f7dd9e50878393a0aebc7019f 491 Gene3D G3DSA:3.30.300.30 370 484 3.9E-24 T 11-10-2018 APT56_07460 f98a264f7dd9e50878393a0aebc7019f 491 Pfam PF00501 AMP-binding enzyme 119 376 2.4E-51 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_07460 f98a264f7dd9e50878393a0aebc7019f 491 Pfam PF00501 AMP-binding enzyme 17 99 2.5E-5 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_07460 f98a264f7dd9e50878393a0aebc7019f 491 ProSitePatterns PS00455 Putative AMP-binding domain signature. 130 141 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_03785 81fbb049c98a8cb71655b2a45111b314 266 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 207 226 3.1E-31 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_03785 81fbb049c98a8cb71655b2a45111b314 266 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 23 44 3.1E-31 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_03785 81fbb049c98a8cb71655b2a45111b314 266 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 83 102 3.1E-31 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_03785 81fbb049c98a8cb71655b2a45111b314 266 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 185 207 3.1E-31 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_03785 81fbb049c98a8cb71655b2a45111b314 266 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 9 259 9.0E-83 T 11-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 APT56_03785 81fbb049c98a8cb71655b2a45111b314 266 Pfam PF01311 Bacterial export proteins, family 1 16 248 1.4E-54 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 Pfam PF03958 Bacterial type II/III secretion system short domain 218 285 3.8E-11 T 11-10-2018 IPR005644 NolW-like APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 Pfam PF03958 Bacterial type II/III secretion system short domain 291 427 3.1E-11 T 11-10-2018 IPR005644 NolW-like APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 Pfam PF03958 Bacterial type II/III secretion system short domain 154 213 3.4E-12 T 11-10-2018 IPR005644 NolW-like APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 PRINTS PR00811 Bacterial general secretion pathway protein D signature 545 555 7.8E-29 T 11-10-2018 IPR001775 GspD/PilQ family APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 PRINTS PR00811 Bacterial general secretion pathway protein D signature 667 681 7.8E-29 T 11-10-2018 IPR001775 GspD/PilQ family APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 PRINTS PR00811 Bacterial general secretion pathway protein D signature 427 437 7.8E-29 T 11-10-2018 IPR001775 GspD/PilQ family APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 PRINTS PR00811 Bacterial general secretion pathway protein D signature 510 534 7.8E-29 T 11-10-2018 IPR001775 GspD/PilQ family APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 PRINTS PR00811 Bacterial general secretion pathway protein D signature 644 662 7.8E-29 T 11-10-2018 IPR001775 GspD/PilQ family APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 36 689 7.0E-185 T 11-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 Pfam PF00263 Bacterial type II and III secretion system protein 514 680 8.6E-51 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 Gene3D G3DSA:3.30.1370.120 26 211 9.4E-51 T 11-10-2018 IPR038591 NolW-like superfamily APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 SUPERFAMILY SSF110997 799 867 1.96E-5 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APT56_11630 33d172ddb71965516c8bbdbbd29caef1 870 Gene3D G3DSA:3.30.1370.120 214 284 3.7E-10 T 11-10-2018 IPR038591 NolW-like superfamily APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 SMART SM00342 173 255 1.2E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 SUPERFAMILY SSF51182 12 174 2.89E-13 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 Pfam PF12833 Helix-turn-helix domain 179 256 4.3E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 255 1.4E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 224 239 1.4E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 SUPERFAMILY SSF46689 156 208 1.47E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 Gene3D G3DSA:2.60.120.10 8 99 5.1E-6 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 Gene3D G3DSA:1.10.10.60 157 260 9.8E-21 T 11-10-2018 APT56_21115 d23d2d30322a1418310f37a6738d8f93 262 SUPERFAMILY SSF46689 213 256 1.16E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_12820 c053c10d26329d0c3d957ceb51111b8f 476 SMART SM00345 20 79 1.3E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_12820 c053c10d26329d0c3d957ceb51111b8f 476 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 79 9.3E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_12820 c053c10d26329d0c3d957ceb51111b8f 476 SUPERFAMILY SSF46785 12 90 1.4E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12820 c053c10d26329d0c3d957ceb51111b8f 476 Gene3D G3DSA:1.10.10.10 13 114 5.2E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12820 c053c10d26329d0c3d957ceb51111b8f 476 Pfam PF00155 Aminotransferase class I and II 147 458 4.0E-29 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_12820 c053c10d26329d0c3d957ceb51111b8f 476 SUPERFAMILY SSF53383 110 469 1.89E-69 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_12820 c053c10d26329d0c3d957ceb51111b8f 476 Gene3D G3DSA:3.90.1150.10 115 464 1.7E-67 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_12820 c053c10d26329d0c3d957ceb51111b8f 476 Gene3D G3DSA:3.40.640.10 151 367 1.7E-67 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_27875 a41be59f8b08261e65f411483286e2d6 233 Pfam PF00072 Response regulator receiver domain 12 111 6.8E-6 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_27875 a41be59f8b08261e65f411483286e2d6 233 Gene3D G3DSA:1.10.10.10 135 233 5.7E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27875 a41be59f8b08261e65f411483286e2d6 233 SMART SM00862 152 230 3.7E-10 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_27875 a41be59f8b08261e65f411483286e2d6 233 SUPERFAMILY SSF52172 1 121 1.34E-14 T 11-10-2018 IPR011006 CheY-like superfamily APT56_27875 a41be59f8b08261e65f411483286e2d6 233 Gene3D G3DSA:3.40.50.2300 1 121 1.5E-9 T 11-10-2018 APT56_27875 a41be59f8b08261e65f411483286e2d6 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 230 5.2E-10 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_27875 a41be59f8b08261e65f411483286e2d6 233 SMART SM00448 4 114 0.0049 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_27875 a41be59f8b08261e65f411483286e2d6 233 SUPERFAMILY SSF46894 144 231 1.3E-11 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 Gene3D G3DSA:3.40.605.10 22 422 2.3E-161 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 PIRSF PIRSF000151 7 426 6.7E-174 T 11-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 Gene3D G3DSA:3.40.309.10 235 383 2.3E-161 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 332 353 - T 11-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 22 415 3.9E-145 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 SUPERFAMILY SSF53720 17 425 7.72E-117 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 Pfam PF00171 Aldehyde dehydrogenase family 318 381 1.4E-7 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 Pfam PF00171 Aldehyde dehydrogenase family 20 291 9.2E-15 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_21510 b5435e0ed7f9469567b375fa4489e833 426 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 14 425 41.955 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APT56_04170 26158b4a285d9d9df043dfcba179ed63 301 SUPERFAMILY SSF51735 15 177 1.67E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_04170 26158b4a285d9d9df043dfcba179ed63 301 Gene3D G3DSA:1.10.1040.10 177 301 3.4E-40 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_04170 26158b4a285d9d9df043dfcba179ed63 301 PIRSF PIRSF000103 10 301 1.3E-72 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT56_04170 26158b4a285d9d9df043dfcba179ed63 301 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 179 298 3.5E-34 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APT56_04170 26158b4a285d9d9df043dfcba179ed63 301 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 16 176 7.6E-47 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 APT56_04170 26158b4a285d9d9df043dfcba179ed63 301 SUPERFAMILY SSF48179 177 300 6.91E-41 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_04170 26158b4a285d9d9df043dfcba179ed63 301 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 19 32 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT56_04170 26158b4a285d9d9df043dfcba179ed63 301 Gene3D G3DSA:3.40.50.720 12 176 1.2E-50 T 11-10-2018 APT56_03775 b0953ca9155e0b7541b433b679980185 222 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 198 210 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 Pfam PF00813 FliP family 12 217 6.0E-69 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 195 220 2.0E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 150 170 2.0E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 29 49 2.0E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 171 192 2.0E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 10 29 2.0E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 49 68 2.0E-68 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 150 165 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_03775 b0953ca9155e0b7541b433b679980185 222 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 9 217 3.9E-83 T 11-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 APT56_23855 2576e0ec84d0efebb85ec5dd969a4e43 335 Gene3D G3DSA:3.40.190.150 37 323 2.9E-101 T 11-10-2018 APT56_23855 2576e0ec84d0efebb85ec5dd969a4e43 335 PIRSF PIRSF017082 4 333 1.2E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_23855 2576e0ec84d0efebb85ec5dd969a4e43 335 SUPERFAMILY SSF53850 119 292 4.34E-7 T 11-10-2018 APT56_23855 2576e0ec84d0efebb85ec5dd969a4e43 335 Gene3D G3DSA:3.40.190.10 135 259 2.9E-101 T 11-10-2018 APT56_23855 2576e0ec84d0efebb85ec5dd969a4e43 335 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 330 3.9E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_26510 e0e3fd4e06f7d3e2bf0de3be800f9278 171 SMART SM01118 2 169 1.6E-14 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 APT56_26510 e0e3fd4e06f7d3e2bf0de3be800f9278 171 Pfam PF01928 CYTH domain 3 157 1.2E-15 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 APT56_26510 e0e3fd4e06f7d3e2bf0de3be800f9278 171 Gene3D G3DSA:2.40.320.10 1 170 8.7E-30 T 11-10-2018 APT56_26510 e0e3fd4e06f7d3e2bf0de3be800f9278 171 SUPERFAMILY SSF55154 3 167 1.1E-31 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 SUPERFAMILY SSF46785 5 65 1.57E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 6.7E-20 T 11-10-2018 APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 4.5E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 4.5E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 4.5E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 Gene3D G3DSA:3.30.70.920 60 143 8.5E-26 T 11-10-2018 APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 SUPERFAMILY SSF54909 66 155 1.61E-20 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 Gene3D G3DSA:1.10.10.10 1 59 2.2E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 SMART SM00344 6 115 1.2E-46 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_11270 1435b0763101c6f4d6354758f7d7e08a 160 Pfam PF01037 Lrp/AsnC ligand binding domain 72 146 2.6E-22 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 64 106 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 Gene3D G3DSA:1.10.10.60 66 118 1.2E-11 T 11-10-2018 APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 Gene3D G3DSA:3.20.80.10 126 277 3.5E-40 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 Gene3D G3DSA:1.10.10.60 6 65 8.8E-10 T 11-10-2018 APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 SMART SM00342 27 110 4.0E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 SUPERFAMILY SSF46689 11 58 2.02E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 Pfam PF06445 GyrI-like small molecule binding domain 127 277 4.1E-33 T 11-10-2018 IPR029442 GyrI-like small molecule binding domain APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 SUPERFAMILY SSF55136 127 277 1.83E-35 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 Pfam PF12833 Helix-turn-helix domain 33 111 1.1E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 SMART SM00871 125 277 2.6E-39 T 11-10-2018 IPR010499 Bacterial transcription activator, effector binding APT56_00430 9ddabac2a84b5469fa845943b1115b3b 277 SUPERFAMILY SSF46689 63 112 9.41E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_26280 8037f9b1848bfde61b05829c178429ad 502 Pfam PF07690 Major Facilitator Superfamily 72 433 3.5E-43 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_26280 8037f9b1848bfde61b05829c178429ad 502 SUPERFAMILY SSF103473 53 481 2.22E-63 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_26280 8037f9b1848bfde61b05829c178429ad 502 Gene3D G3DSA:1.20.1250.20 58 251 4.1E-39 T 11-10-2018 APT56_26280 8037f9b1848bfde61b05829c178429ad 502 Gene3D G3DSA:1.20.1250.20 261 483 2.1E-16 T 11-10-2018 APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1381 1830 1.6E-82 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 599 723 4.7E-12 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 985 1138 2.0E-17 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Pfam PF03212 Pertactin 1409 1490 6.7E-6 T 11-10-2018 IPR004899 Pertactin, central region APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Pfam PF03212 Pertactin 998 1082 1.0E-4 T 11-10-2018 IPR004899 Pertactin, central region APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 493 522 4.3E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1269 1298 3.1E-11 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 878 909 1.7E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 SUPERFAMILY SSF103515 1517 1830 1.15E-31 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Gene3D G3DSA:2.160.20.20 548 700 4.4E-15 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Gene3D G3DSA:2.160.20.20 933 1100 3.9E-29 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Gene3D G3DSA:2.160.20.20 1328 1493 1.0E-32 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Pfam PF12951 Passenger-associated-transport-repeat 1270 1297 5.9E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Pfam PF12951 Passenger-associated-transport-repeat 879 906 6.1E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Pfam PF12951 Passenger-associated-transport-repeat 494 521 8.6E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Gene3D G3DSA:2.40.128.130 1507 1830 3.4E-67 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 SUPERFAMILY SSF51126 793 1099 2.23E-20 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 Pfam PF03797 Autotransporter beta-domain 1548 1808 8.9E-33 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 SMART SM00869 1545 1819 2.6E-27 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 SUPERFAMILY SSF51126 1231 1492 2.23E-21 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_17560 3ff724488dc3a18c3fafe988fd7ce8e9 1830 SUPERFAMILY SSF51126 292 699 1.35E-12 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_23280 a8fd1dbde0aa1897d42d23806fa29209 429 Gene3D G3DSA:3.30.450.20 299 419 1.5E-11 T 11-10-2018 APT56_23280 a8fd1dbde0aa1897d42d23806fa29209 429 Pfam PF08447 PAS fold 341 416 4.0E-6 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_23280 a8fd1dbde0aa1897d42d23806fa29209 429 Pfam PF05231 MASE1 14 293 5.7E-29 T 11-10-2018 IPR007895 MASE1 APT56_23280 a8fd1dbde0aa1897d42d23806fa29209 429 SUPERFAMILY SSF55785 298 414 3.98E-5 T 11-10-2018 IPR035965 PAS domain superfamily APT56_04465 be42dfaa4162601c240596f290020c2a 291 Gene3D G3DSA:3.30.540.10 13 166 1.3E-42 T 11-10-2018 APT56_04465 be42dfaa4162601c240596f290020c2a 291 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 94 107 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR01959 SuhB family inositol monophosphatase signature 224 236 4.7E-13 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR01959 SuhB family inositol monophosphatase signature 182 208 4.7E-13 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR01959 SuhB family inositol monophosphatase signature 130 149 4.7E-13 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT56_04465 be42dfaa4162601c240596f290020c2a 291 SUPERFAMILY SSF56655 19 288 3.27E-74 T 11-10-2018 APT56_04465 be42dfaa4162601c240596f290020c2a 291 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 237 251 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 APT56_04465 be42dfaa4162601c240596f290020c2a 291 Pfam PF00459 Inositol monophosphatase family 21 288 4.8E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_04465 be42dfaa4162601c240596f290020c2a 291 Gene3D G3DSA:3.40.190.80 167 289 1.2E-35 T 11-10-2018 APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR00377 Inositol monophosphatase superfamily signature 53 73 1.9E-48 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR00377 Inositol monophosphatase superfamily signature 234 258 1.9E-48 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR00377 Inositol monophosphatase superfamily signature 75 91 1.9E-48 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR00377 Inositol monophosphatase superfamily signature 203 224 1.9E-48 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR00377 Inositol monophosphatase superfamily signature 94 110 1.9E-48 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_04465 be42dfaa4162601c240596f290020c2a 291 PRINTS PR00377 Inositol monophosphatase superfamily signature 156 179 1.9E-48 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 Gene3D G3DSA:2.60.120.10 5 154 1.6E-25 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 SMART SM00419 173 221 1.3E-9 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 SUPERFAMILY SSF51206 15 152 2.23E-23 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 SMART SM00100 20 139 1.8E-9 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 Pfam PF13545 Crp-like helix-turn-helix domain 159 227 9.0E-14 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 SUPERFAMILY SSF46785 157 231 3.96E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 Pfam PF00027 Cyclic nucleotide-binding domain 39 126 6.8E-12 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 Gene3D G3DSA:1.10.10.10 155 230 9.5E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 179 195 7.1E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_19520 484b8d3d1b7d6752c640b5cda6bfc730 232 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 195 210 7.1E-6 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_06410 cab826ac05077814ee79c4cac433967c 164 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 10 158 1.5E-57 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06410 cab826ac05077814ee79c4cac433967c 164 Gene3D G3DSA:3.40.30.10 75 164 1.9E-22 T 11-10-2018 APT56_06410 cab826ac05077814ee79c4cac433967c 164 SUPERFAMILY SSF52833 3 159 1.23E-48 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_06410 cab826ac05077814ee79c4cac433967c 164 PIRSF PIRSF000216 2 164 3.7E-54 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06410 cab826ac05077814ee79c4cac433967c 164 Gene3D G3DSA:1.10.10.1590 1 74 1.5E-22 T 11-10-2018 APT56_06410 cab826ac05077814ee79c4cac433967c 164 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 12 158 4.6E-46 T 11-10-2018 APT56_19185 a937df5797a1f0714f67e1f3ce380695 4220 Gene3D G3DSA:2.160.20.10 793 1051 1.7E-5 T 11-10-2018 IPR012334 Pectin lyase fold APT56_19185 a937df5797a1f0714f67e1f3ce380695 4220 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 4006 4116 6.0E-38 T 11-10-2018 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 APT56_19185 a937df5797a1f0714f67e1f3ce380695 4220 Pfam PF05860 haemagglutination activity domain 163 255 6.1E-19 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_19185 a937df5797a1f0714f67e1f3ce380695 4220 Gene3D G3DSA:2.160.20.10 156 433 2.5E-48 T 11-10-2018 IPR012334 Pectin lyase fold APT56_19185 a937df5797a1f0714f67e1f3ce380695 4220 SUPERFAMILY SSF51126 168 489 3.77E-30 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_19185 a937df5797a1f0714f67e1f3ce380695 4220 SMART SM00912 153 258 4.1E-24 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_19185 a937df5797a1f0714f67e1f3ce380695 4220 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 179 252 2.7E-18 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 70 461 7.7E-60 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 47 481 3.5E-81 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 SUPERFAMILY SSF56601 33 481 4.54E-90 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 Gene3D G3DSA:3.40.710.10 289 479 2.6E-56 T 11-10-2018 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 439 452 1.0E-23 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 304 326 1.0E-23 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 362 376 1.0E-23 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 377 391 1.0E-23 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 74 93 1.0E-23 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 Gene3D G3DSA:3.40.710.10 39 102 4.6E-5 T 11-10-2018 APT56_22700 0e81e9aea14f86b9ca042eb84d26275e 482 Gene3D G3DSA:3.50.80.20 103 170 7.1E-10 T 11-10-2018 APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 230 250 1.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 SUPERFAMILY SSF51735 12 267 4.09E-75 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 6.8E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 6.8E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 6.8E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 267 1.9E-61 T 11-10-2018 APT56_26115 0c33fb11ae66257ff3230c55c26908f7 271 Gene3D G3DSA:3.40.50.720 6 269 4.6E-82 T 11-10-2018 APT56_01295 b9f4b2804b99706aebd9cbd08cddc109 290 Gene3D G3DSA:3.40.190.290 93 289 7.0E-38 T 11-10-2018 APT56_01295 b9f4b2804b99706aebd9cbd08cddc109 290 Pfam PF03466 LysR substrate binding domain 88 288 4.1E-44 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_01295 b9f4b2804b99706aebd9cbd08cddc109 290 SUPERFAMILY SSF46785 4 112 1.02E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01295 b9f4b2804b99706aebd9cbd08cddc109 290 SUPERFAMILY SSF53850 90 288 2.82E-42 T 11-10-2018 APT56_01295 b9f4b2804b99706aebd9cbd08cddc109 290 Gene3D G3DSA:1.10.10.10 3 92 4.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01295 b9f4b2804b99706aebd9cbd08cddc109 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.3E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_27180 02ff1887763539948bd791853db37034 303 Gene3D G3DSA:3.10.310.10 11 288 5.1E-94 T 11-10-2018 APT56_27180 02ff1887763539948bd791853db37034 303 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 9 292 36.665 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT56_27180 02ff1887763539948bd791853db37034 303 Pfam PF01678 Diaminopimelate epimerase 11 130 3.1E-32 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT56_27180 02ff1887763539948bd791853db37034 303 Pfam PF01678 Diaminopimelate epimerase 172 283 2.1E-24 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT56_27180 02ff1887763539948bd791853db37034 303 SUPERFAMILY SSF54506 9 292 4.4E-47 T 11-10-2018 APT56_27180 02ff1887763539948bd791853db37034 303 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 10 290 1.0E-82 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT56_27180 02ff1887763539948bd791853db37034 303 Gene3D G3DSA:3.10.310.10 123 279 5.1E-94 T 11-10-2018 APT56_27180 02ff1887763539948bd791853db37034 303 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 72 86 - T 11-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APT56_03770 71dd8a3784016487c7b1701f0f5de7f0 359 PRINTS PR00956 Flagellar motor switch protein FliN signature 331 346 2.7E-8 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 APT56_03770 71dd8a3784016487c7b1701f0f5de7f0 359 PRINTS PR00956 Flagellar motor switch protein FliN signature 284 300 2.7E-8 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 APT56_03770 71dd8a3784016487c7b1701f0f5de7f0 359 PRINTS PR00956 Flagellar motor switch protein FliN signature 301 317 2.7E-8 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 APT56_03770 71dd8a3784016487c7b1701f0f5de7f0 359 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 285 353 3.5E-16 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) APT56_03770 71dd8a3784016487c7b1701f0f5de7f0 359 Gene3D G3DSA:2.30.330.10 272 357 2.6E-24 T 11-10-2018 IPR036429 SpoA-like superfamily APT56_03770 71dd8a3784016487c7b1701f0f5de7f0 359 SUPERFAMILY SSF101801 285 355 7.19E-16 T 11-10-2018 IPR036429 SpoA-like superfamily APT56_03770 71dd8a3784016487c7b1701f0f5de7f0 359 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 66 354 2.3E-43 T 11-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 APT56_25620 b0b7d2107148ea2409ade6bb318d1c47 182 SUPERFAMILY SSF51182 6 159 1.07E-25 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_25620 b0b7d2107148ea2409ade6bb318d1c47 182 Pfam PF04115 Ureidoglycolate lyase 66 134 6.0E-13 T 11-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 APT56_25620 b0b7d2107148ea2409ade6bb318d1c47 182 Gene3D G3DSA:2.60.120.480 5 166 1.5E-20 T 11-10-2018 IPR024060 Ureidoglycolate lyase domain superfamily GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 APT56_03345 3f717b5698acad42e3f71f0e31d6146f 480 Pfam PF00501 AMP-binding enzyme 119 374 3.2E-56 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_03345 3f717b5698acad42e3f71f0e31d6146f 480 Pfam PF00501 AMP-binding enzyme 14 105 1.8E-14 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_03345 3f717b5698acad42e3f71f0e31d6146f 480 Gene3D G3DSA:3.30.300.30 368 477 3.9E-24 T 11-10-2018 APT56_03345 3f717b5698acad42e3f71f0e31d6146f 480 SUPERFAMILY SSF56801 14 477 7.06E-115 T 11-10-2018 APT56_03345 3f717b5698acad42e3f71f0e31d6146f 480 ProSitePatterns PS00455 Putative AMP-binding domain signature. 128 139 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_03345 3f717b5698acad42e3f71f0e31d6146f 480 Gene3D G3DSA:3.40.50.12780 11 367 1.7E-99 T 11-10-2018 APT56_19465 a0a2b591c78c8ce9f1478b1bdbeae13e 443 ProSitePatterns PS00217 Sugar transport proteins signature 2. 124 149 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_19465 a0a2b591c78c8ce9f1478b1bdbeae13e 443 Gene3D G3DSA:1.20.1250.20 10 430 6.0E-60 T 11-10-2018 APT56_19465 a0a2b591c78c8ce9f1478b1bdbeae13e 443 SUPERFAMILY SSF103473 1 423 5.89E-64 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_19465 a0a2b591c78c8ce9f1478b1bdbeae13e 443 Pfam PF07690 Major Facilitator Superfamily 18 351 6.7E-26 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_03990 c1497bd23af235fb510594df006ff120 401 Gene3D G3DSA:3.40.50.2300 149 366 5.5E-108 T 11-10-2018 APT56_03990 c1497bd23af235fb510594df006ff120 401 Gene3D G3DSA:3.40.50.2300 53 358 5.5E-108 T 11-10-2018 APT56_03990 c1497bd23af235fb510594df006ff120 401 SUPERFAMILY SSF53822 30 379 8.37E-85 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_03990 c1497bd23af235fb510594df006ff120 401 Pfam PF13458 Periplasmic binding protein 30 365 4.7E-85 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_22065 f2a868a64cfe94558798209a817c1693 323 Gene3D G3DSA:3.40.190.10 125 248 2.8E-107 T 11-10-2018 APT56_22065 f2a868a64cfe94558798209a817c1693 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 319 2.6E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_22065 f2a868a64cfe94558798209a817c1693 323 Gene3D G3DSA:3.40.190.150 28 313 2.8E-107 T 11-10-2018 APT56_22065 f2a868a64cfe94558798209a817c1693 323 SUPERFAMILY SSF53850 104 286 3.89E-19 T 11-10-2018 APT56_22065 f2a868a64cfe94558798209a817c1693 323 PIRSF PIRSF017082 1 323 7.2E-90 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21435 e436750e2b41c76584293e4e077599d0 78 Gene3D G3DSA:2.30.170.40 2 77 5.7E-36 T 11-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_21435 e436750e2b41c76584293e4e077599d0 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 23.245 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_21435 e436750e2b41c76584293e4e077599d0 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 6.9E-31 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_21435 e436750e2b41c76584293e4e077599d0 78 SUPERFAMILY SSF143800 1 77 1.0E-33 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_21435 e436750e2b41c76584293e4e077599d0 78 Pfam PF00830 Ribosomal L28 family 3 62 9.5E-31 T 11-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 SUPERFAMILY SSF52540 1 188 4.57E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 TIGRFAM TIGR01351 adk: adenylate kinase 2 190 9.0E-74 T 11-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 Pfam PF00406 Adenylate kinase 5 185 7.8E-58 T 11-10-2018 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 Pfam PF05191 Adenylate kinase, active site lid 123 158 7.0E-18 T 11-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 Hamap MF_00235 Adenylate kinase [adk]. 1 217 53.692 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 PRINTS PR00094 Adenylate kinase signature 4 17 1.8E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 PRINTS PR00094 Adenylate kinase signature 173 187 1.8E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 PRINTS PR00094 Adenylate kinase signature 81 97 1.8E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 PRINTS PR00094 Adenylate kinase signature 156 171 1.8E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 PRINTS PR00094 Adenylate kinase signature 32 46 1.8E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APT56_18275 7c7ad1fde7ff9bf4dac0880a73784a93 218 Gene3D G3DSA:3.40.50.300 1 216 2.3E-77 T 11-10-2018 APT56_13410 0bc410f68cdc8a47c053dcca57bc4638 198 SMART SM00382 21 192 1.8E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_13410 0bc410f68cdc8a47c053dcca57bc4638 198 Pfam PF00005 ABC transporter 12 144 1.6E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13410 0bc410f68cdc8a47c053dcca57bc4638 198 SUPERFAMILY SSF52540 12 194 7.24E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_13410 0bc410f68cdc8a47c053dcca57bc4638 198 Gene3D G3DSA:3.40.50.300 9 198 9.3E-46 T 11-10-2018 APT56_19445 8446ff57532a26a84d99bf0d482138c7 432 SUPERFAMILY SSF53187 10 426 6.0E-57 T 11-10-2018 APT56_19445 8446ff57532a26a84d99bf0d482138c7 432 SUPERFAMILY SSF55031 209 321 1.31E-13 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_19445 8446ff57532a26a84d99bf0d482138c7 432 Gene3D G3DSA:3.30.70.360 209 338 2.0E-148 T 11-10-2018 APT56_19445 8446ff57532a26a84d99bf0d482138c7 432 Pfam PF01546 Peptidase family M20/M25/M40 102 422 1.8E-32 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_19445 8446ff57532a26a84d99bf0d482138c7 432 Pfam PF07687 Peptidase dimerisation domain 206 322 4.4E-18 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_19445 8446ff57532a26a84d99bf0d482138c7 432 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 25 414 1.3E-92 T 11-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase APT56_19445 8446ff57532a26a84d99bf0d482138c7 432 Gene3D G3DSA:3.40.630.10 31 426 2.0E-148 T 11-10-2018 APT56_18025 91e372d310c5ac4395661d6e7f2c7723 255 Gene3D G3DSA:3.30.450.40 72 250 1.1E-28 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_18025 91e372d310c5ac4395661d6e7f2c7723 255 Gene3D G3DSA:1.10.10.10 3 62 3.7E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18025 91e372d310c5ac4395661d6e7f2c7723 255 Pfam PF09339 IclR helix-turn-helix domain 10 53 1.5E-10 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_18025 91e372d310c5ac4395661d6e7f2c7723 255 SUPERFAMILY SSF55781 76 248 2.94E-31 T 11-10-2018 APT56_18025 91e372d310c5ac4395661d6e7f2c7723 255 SUPERFAMILY SSF46785 4 66 8.46E-9 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18025 91e372d310c5ac4395661d6e7f2c7723 255 Pfam PF01614 Bacterial transcriptional regulator 125 234 4.6E-7 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_18025 91e372d310c5ac4395661d6e7f2c7723 255 SMART SM00346 1 91 0.0024 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_17555 bb27998e11440f8ba5998c6cca7e54a8 566 Gene3D G3DSA:2.40.50.460 454 565 2.1E-9 T 11-10-2018 APT56_17555 bb27998e11440f8ba5998c6cca7e54a8 566 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 25 564 2.2E-136 T 11-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 APT56_17555 bb27998e11440f8ba5998c6cca7e54a8 566 Pfam PF02272 DHHA1 domain 324 452 1.7E-19 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 APT56_17555 bb27998e11440f8ba5998c6cca7e54a8 566 SUPERFAMILY SSF64182 50 464 1.31E-110 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily APT56_17555 bb27998e11440f8ba5998c6cca7e54a8 566 Gene3D G3DSA:3.90.1640.30 53 328 2.1E-83 T 11-10-2018 APT56_17555 bb27998e11440f8ba5998c6cca7e54a8 566 Pfam PF01368 DHH family 77 205 2.2E-8 T 11-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_17555 bb27998e11440f8ba5998c6cca7e54a8 566 Gene3D G3DSA:3.10.310.30 329 453 7.3E-29 T 11-10-2018 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 505 9.6E-193 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 Pfam PF00152 tRNA synthetases class II (D, K and N) 160 503 2.1E-82 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 Gene3D G3DSA:2.40.50.140 14 152 4.4E-43 T 11-10-2018 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 Gene3D G3DSA:3.30.930.10 160 504 3.0E-128 T 11-10-2018 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 388 404 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 260 277 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 242 255 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 213 229 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 PRINTS PR00982 Lysyl-tRNA synthetase signature 197 207 1.3E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 20 506 43.607 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 SUPERFAMILY SSF50249 12 153 1.45E-43 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 SUPERFAMILY SSF55681 160 504 9.78E-116 T 11-10-2018 APT56_17580 f6d522c7af89652cdea9cd7d777c0e92 507 Pfam PF01336 OB-fold nucleic acid binding domain 67 141 4.0E-16 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APT56_15465 b6fcf9f04a804e7ebf13d6cf60918139 345 Pfam PF16884 N-terminal domain of oxidoreductase 9 115 3.2E-43 T 11-10-2018 APT56_15465 b6fcf9f04a804e7ebf13d6cf60918139 345 Gene3D G3DSA:3.90.180.10 19 339 2.7E-126 T 11-10-2018 APT56_15465 b6fcf9f04a804e7ebf13d6cf60918139 345 Pfam PF00107 Zinc-binding dehydrogenase 161 303 3.1E-20 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_15465 b6fcf9f04a804e7ebf13d6cf60918139 345 SUPERFAMILY SSF50129 7 146 3.43E-43 T 11-10-2018 IPR011032 GroES-like superfamily APT56_15465 b6fcf9f04a804e7ebf13d6cf60918139 345 SUPERFAMILY SSF51735 127 304 2.8E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_15465 b6fcf9f04a804e7ebf13d6cf60918139 345 Gene3D G3DSA:3.40.50.720 130 311 2.7E-126 T 11-10-2018 APT56_01245 e5e120c9e74b6004faa1d26c0756ee1b 270 Pfam PF01061 ABC-2 type transporter 25 233 5.0E-35 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT56_01245 e5e120c9e74b6004faa1d26c0756ee1b 270 PRINTS PR00164 ABC-2 type transport system membrane protein signature 190 209 1.6E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_01245 e5e120c9e74b6004faa1d26c0756ee1b 270 PRINTS PR00164 ABC-2 type transport system membrane protein signature 72 94 1.6E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_01245 e5e120c9e74b6004faa1d26c0756ee1b 270 PRINTS PR00164 ABC-2 type transport system membrane protein signature 210 229 1.6E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_01245 e5e120c9e74b6004faa1d26c0756ee1b 270 PIRSF PIRSF006648 1 266 1.6E-24 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_15650 9cb1b703c6697aca9e4903714d7c591d 290 SUPERFAMILY SSF51430 14 286 1.22E-63 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_15650 9cb1b703c6697aca9e4903714d7c591d 290 Gene3D G3DSA:3.20.20.100 11 289 1.3E-65 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_15650 9cb1b703c6697aca9e4903714d7c591d 290 Pfam PF00248 Aldo/keto reductase family 19 286 3.0E-48 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_04835 80c9cf0535f58df31cd862c4631eaad6 233 Gene3D G3DSA:1.10.8.60 161 226 2.9E-23 T 11-10-2018 APT56_04835 80c9cf0535f58df31cd862c4631eaad6 233 Pfam PF00308 Bacterial dnaA protein 17 206 5.6E-11 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA APT56_04835 80c9cf0535f58df31cd862c4631eaad6 233 Gene3D G3DSA:3.40.50.300 28 158 8.5E-19 T 11-10-2018 APT56_04835 80c9cf0535f58df31cd862c4631eaad6 233 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 4 226 7.8E-68 T 11-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 APT56_04835 80c9cf0535f58df31cd862c4631eaad6 233 SUPERFAMILY SSF52540 33 206 3.34E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22935 a5e09225d72c562b16bc7435ad76c865 376 SUPERFAMILY SSF53335 165 314 4.63E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_22935 a5e09225d72c562b16bc7435ad76c865 376 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT56_22935 a5e09225d72c562b16bc7435ad76c865 376 Pfam PF05175 Methyltransferase small domain 194 313 1.4E-11 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 APT56_22935 a5e09225d72c562b16bc7435ad76c865 376 Gene3D G3DSA:3.40.50.150 186 369 2.5E-30 T 11-10-2018 APT56_18670 d18dbdcc5ab94d658d20c0a16650a4b5 409 Gene3D G3DSA:2.60.120.580 188 281 1.2E-20 T 11-10-2018 APT56_18670 d18dbdcc5ab94d658d20c0a16650a4b5 409 Gene3D G3DSA:2.60.120.580 4 133 3.2E-16 T 11-10-2018 APT56_18670 d18dbdcc5ab94d658d20c0a16650a4b5 409 SUPERFAMILY SSF141130 16 383 1.06E-77 T 11-10-2018 APT56_18670 d18dbdcc5ab94d658d20c0a16650a4b5 409 Pfam PF03069 Acetamidase/Formamidase family 8 384 4.2E-176 T 11-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 APT56_06000 aa379323ec58c00d26622a23b31ec3bf 308 Pfam PF00682 HMGL-like 5 279 6.8E-47 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT56_06000 aa379323ec58c00d26622a23b31ec3bf 308 SUPERFAMILY SSF51569 1 282 8.06E-66 T 11-10-2018 APT56_06000 aa379323ec58c00d26622a23b31ec3bf 308 Gene3D G3DSA:3.20.20.70 1 300 2.1E-101 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 Pfam PF13167 GTP-binding GTPase N-terminal 18 104 2.6E-27 T 11-10-2018 IPR025121 GTPase HflX, N-terminal APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 2 350 9.8E-147 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 Gene3D G3DSA:3.40.50.300 191 355 7.4E-40 T 11-10-2018 APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 Pfam PF01926 50S ribosome-binding GTPase 192 310 9.0E-21 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 Pfam PF16360 GTP-binding GTPase Middle Region 106 184 9.7E-29 T 11-10-2018 IPR032305 GTP-binding protein, middle domain APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 SUPERFAMILY SSF52540 190 350 1.83E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 Hamap MF_00900 GTPase HflX [hflX]. 19 365 45.746 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 Gene3D G3DSA:3.40.50.11060 13 130 1.9E-34 T 11-10-2018 APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 259 277 9.8E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 192 212 9.8E-8 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_09550 a35b1d2ef117582e6310a5dfcee5899b 368 PIRSF PIRSF006809 1 362 3.0E-134 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 173 259 2.9E-23 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 455 1.5E-10 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 SUPERFAMILY SSF53738 161 261 5.89E-28 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 105 114 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 SUPERFAMILY SSF53738 263 359 3.22E-33 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 Gene3D G3DSA:3.30.310.50 374 467 9.2E-24 T 11-10-2018 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 8.0E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 239 254 8.0E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 210 223 8.0E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 104 118 8.0E-22 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 Gene3D G3DSA:3.40.120.10 178 255 1.4E-30 T 11-10-2018 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 16 138 7.6E-30 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 SUPERFAMILY SSF53738 12 140 7.46E-36 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 Gene3D G3DSA:3.40.120.10 7 157 5.9E-46 T 11-10-2018 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 SUPERFAMILY SSF55957 372 466 1.12E-18 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 264 372 1.2E-23 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APT56_19905 22ec307c62a37eeb71f0e642fd1636bd 467 Gene3D G3DSA:3.40.120.10 256 373 1.3E-44 T 11-10-2018 APT56_23735 ce822d273d9a29deee05d7ddeb861aaa 747 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 3 743 8.4E-290 T 11-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_23735 ce822d273d9a29deee05d7ddeb861aaa 747 Pfam PF04185 Phosphoesterase family 46 476 2.5E-107 T 11-10-2018 IPR007312 Phosphoesterase GO:0016788 APT56_23735 ce822d273d9a29deee05d7ddeb861aaa 747 Pfam PF05506 Domain of unknown function (DUF756) 647 729 1.3E-21 T 11-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_23735 ce822d273d9a29deee05d7ddeb861aaa 747 Pfam PF05506 Domain of unknown function (DUF756) 548 636 6.2E-26 T 11-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_23735 ce822d273d9a29deee05d7ddeb861aaa 747 Gene3D G3DSA:3.40.720.10 35 203 8.1E-31 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_23880 9bf57765ba09920de2e09bb807eea494 291 Gene3D G3DSA:1.10.1040.10 164 291 7.0E-26 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_23880 9bf57765ba09920de2e09bb807eea494 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 156 7.5E-35 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 APT56_23880 9bf57765ba09920de2e09bb807eea494 291 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 11-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT56_23880 9bf57765ba09920de2e09bb807eea494 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 283 2.1E-15 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APT56_23880 9bf57765ba09920de2e09bb807eea494 291 Gene3D G3DSA:3.40.50.720 1 158 7.9E-44 T 11-10-2018 APT56_23880 9bf57765ba09920de2e09bb807eea494 291 SUPERFAMILY SSF51735 1 162 3.23E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_23880 9bf57765ba09920de2e09bb807eea494 291 PIRSF PIRSF000103 1 291 1.6E-67 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT56_23880 9bf57765ba09920de2e09bb807eea494 291 SUPERFAMILY SSF48179 165 286 1.59E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_21205 ead2f0b4ad3127f437394ef9d232a2de 414 SUPERFAMILY SSF111369 52 299 6.02E-81 T 11-10-2018 APT56_21205 ead2f0b4ad3127f437394ef9d232a2de 414 Gene3D G3DSA:1.10.287.470 97 170 1.2E-110 T 11-10-2018 APT56_21205 ead2f0b4ad3127f437394ef9d232a2de 414 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 373 2.2E-84 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_21205 ead2f0b4ad3127f437394ef9d232a2de 414 Gene3D G3DSA:2.40.420.20 303 371 1.2E-110 T 11-10-2018 APT56_21205 ead2f0b4ad3127f437394ef9d232a2de 414 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 58 292 1.6E-12 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_21205 ead2f0b4ad3127f437394ef9d232a2de 414 Gene3D G3DSA:2.40.50.100 62 206 1.2E-110 T 11-10-2018 APT56_21205 ead2f0b4ad3127f437394ef9d232a2de 414 Pfam PF00529 HlyD membrane-fusion protein of T1SS 38 358 6.2E-7 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_21205 ead2f0b4ad3127f437394ef9d232a2de 414 Gene3D G3DSA:2.40.30.170 51 302 1.2E-110 T 11-10-2018 APT56_10920 c7ae4a60f90e72ec1f6c32c37a96fb8a 299 Gene3D G3DSA:3.40.190.10 91 275 2.7E-21 T 11-10-2018 APT56_10920 c7ae4a60f90e72ec1f6c32c37a96fb8a 299 Pfam PF03466 LysR substrate binding domain 89 286 6.6E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_10920 c7ae4a60f90e72ec1f6c32c37a96fb8a 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.4E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10920 c7ae4a60f90e72ec1f6c32c37a96fb8a 299 SUPERFAMILY SSF53850 88 290 7.06E-33 T 11-10-2018 APT56_10920 c7ae4a60f90e72ec1f6c32c37a96fb8a 299 Gene3D G3DSA:3.40.190.10 163 263 2.7E-21 T 11-10-2018 APT56_10920 c7ae4a60f90e72ec1f6c32c37a96fb8a 299 Gene3D G3DSA:1.10.10.10 1 90 1.1E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10920 c7ae4a60f90e72ec1f6c32c37a96fb8a 299 SUPERFAMILY SSF46785 1 83 3.48E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20550 f2eb93c41254e96bd98c85dfd9e74d7a 123 Gene3D G3DSA:2.40.50.140 11 123 2.5E-31 T 11-10-2018 APT56_20550 f2eb93c41254e96bd98c85dfd9e74d7a 123 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 17 122 1.5E-43 T 11-10-2018 IPR008231 Probable chaperone CsaA APT56_20550 f2eb93c41254e96bd98c85dfd9e74d7a 123 Pfam PF01588 Putative tRNA binding domain 25 120 1.3E-11 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 APT56_20550 f2eb93c41254e96bd98c85dfd9e74d7a 123 SUPERFAMILY SSF50249 15 122 2.69E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 133 146 - T 11-10-2018 IPR033135 ClpP, histidine active site APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 Gene3D G3DSA:3.90.226.10 14 216 5.3E-84 T 11-10-2018 APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 PRINTS PR00127 Clp protease catalytic subunit P signature 189 208 3.3E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 PRINTS PR00127 Clp protease catalytic subunit P signature 40 55 3.3E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 PRINTS PR00127 Clp protease catalytic subunit P signature 132 151 3.3E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 PRINTS PR00127 Clp protease catalytic subunit P signature 111 128 3.3E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 PRINTS PR00127 Clp protease catalytic subunit P signature 80 100 3.3E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 Pfam PF00574 Clp protease 34 213 9.3E-89 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 24 214 44.829 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 24 212 6.1E-104 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APT56_17730 fc718e3ff3cbe989ef1910e6c8317cce 217 SUPERFAMILY SSF52096 32 214 1.03E-74 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_05325 4d156aff95c8752d5077801c29550cf0 447 Gene3D G3DSA:3.40.350.10 8 176 1.0E-47 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APT56_05325 4d156aff95c8752d5077801c29550cf0 447 SUPERFAMILY SSF55920 180 445 2.62E-80 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APT56_05325 4d156aff95c8752d5077801c29550cf0 447 Gene3D G3DSA:3.90.230.10 177 447 1.3E-93 T 11-10-2018 APT56_05325 4d156aff95c8752d5077801c29550cf0 447 Pfam PF05195 Aminopeptidase P, N-terminal domain 11 127 9.3E-34 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 APT56_05325 4d156aff95c8752d5077801c29550cf0 447 Pfam PF00557 Metallopeptidase family M24 186 424 2.5E-60 T 11-10-2018 IPR000994 Peptidase M24 APT56_05325 4d156aff95c8752d5077801c29550cf0 447 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 353 365 - T 11-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site APT56_05325 4d156aff95c8752d5077801c29550cf0 447 SUPERFAMILY SSF53092 5 179 1.02E-47 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APT56_05325 4d156aff95c8752d5077801c29550cf0 447 SMART SM01011 6 141 4.6E-58 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 APT56_15045 7415f78573b970837b0720352f90f0e4 348 SUPERFAMILY SSF53850 131 268 2.54E-6 T 11-10-2018 APT56_15045 7415f78573b970837b0720352f90f0e4 348 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 48 278 3.2E-29 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_15045 7415f78573b970837b0720352f90f0e4 348 Gene3D G3DSA:3.40.190.170 27 340 2.2E-67 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_01460 27c5252fef20046c6350e1027fd85141 457 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 1 453 42.757 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 APT56_01460 27c5252fef20046c6350e1027fd85141 457 SUPERFAMILY SSF51161 256 438 3.79E-49 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_01460 27c5252fef20046c6350e1027fd85141 457 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 3 456 1.2E-188 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 APT56_01460 27c5252fef20046c6350e1027fd85141 457 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 327 355 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT56_01460 27c5252fef20046c6350e1027fd85141 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 268 300 9.6E-5 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_01460 27c5252fef20046c6350e1027fd85141 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 396 430 1.2E-6 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_01460 27c5252fef20046c6350e1027fd85141 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 320 353 1.2E-5 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_01460 27c5252fef20046c6350e1027fd85141 457 Gene3D G3DSA:3.90.550.10 1 228 1.7E-61 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_01460 27c5252fef20046c6350e1027fd85141 457 Gene3D G3DSA:2.160.10.10 229 457 3.9E-64 T 11-10-2018 APT56_01460 27c5252fef20046c6350e1027fd85141 457 Pfam PF12804 MobA-like NTP transferase domain 4 129 5.1E-24 T 11-10-2018 IPR025877 MobA-like NTP transferase APT56_01460 27c5252fef20046c6350e1027fd85141 457 SUPERFAMILY SSF53448 2 253 1.8E-60 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_02185 4e1b678a7d8bf27f698c0335885d91f5 141 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 132 21.665 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02185 4e1b678a7d8bf27f698c0335885d91f5 141 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 6.5E-30 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02185 4e1b678a7d8bf27f698c0335885d91f5 141 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 127 1.5E-40 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02185 4e1b678a7d8bf27f698c0335885d91f5 141 SUPERFAMILY SSF51344 3 85 2.22E-25 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02185 4e1b678a7d8bf27f698c0335885d91f5 141 Gene3D G3DSA:1.20.5.440 90 131 5.1E-6 T 11-10-2018 APT56_02185 4e1b678a7d8bf27f698c0335885d91f5 141 Gene3D G3DSA:2.60.15.10 2 89 1.1E-31 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02185 4e1b678a7d8bf27f698c0335885d91f5 141 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 84 4.0E-35 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02185 4e1b678a7d8bf27f698c0335885d91f5 141 SUPERFAMILY SSF46604 88 135 8.89E-8 T 11-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_07845 ff048b70887054fd173d3939fdc54432 485 SMART SM00228 400 475 3.5E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_07845 ff048b70887054fd173d3939fdc54432 485 SMART SM00228 289 371 4.7E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_07845 ff048b70887054fd173d3939fdc54432 485 Pfam PF13180 PDZ domain 290 377 2.0E-15 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_07845 ff048b70887054fd173d3939fdc54432 485 Pfam PF13180 PDZ domain 402 484 1.6E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_07845 ff048b70887054fd173d3939fdc54432 485 SUPERFAMILY SSF50156 400 484 3.02E-16 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_07845 ff048b70887054fd173d3939fdc54432 485 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 61 480 9.9E-146 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 APT56_07845 ff048b70887054fd173d3939fdc54432 485 SUPERFAMILY SSF50494 45 298 1.41E-62 T 11-10-2018 IPR009003 Peptidase S1, PA clan APT56_07845 ff048b70887054fd173d3939fdc54432 485 SUPERFAMILY SSF50156 270 379 1.21E-22 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_07845 ff048b70887054fd173d3939fdc54432 485 Gene3D G3DSA:2.30.42.10 284 390 1.7E-26 T 11-10-2018 APT56_07845 ff048b70887054fd173d3939fdc54432 485 PRINTS PR00834 HtrA/DegQ protease family signature 187 211 1.5E-48 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_07845 ff048b70887054fd173d3939fdc54432 485 PRINTS PR00834 HtrA/DegQ protease family signature 147 167 1.5E-48 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_07845 ff048b70887054fd173d3939fdc54432 485 PRINTS PR00834 HtrA/DegQ protease family signature 329 341 1.5E-48 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_07845 ff048b70887054fd173d3939fdc54432 485 PRINTS PR00834 HtrA/DegQ protease family signature 126 138 1.5E-48 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_07845 ff048b70887054fd173d3939fdc54432 485 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 1.5E-48 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_07845 ff048b70887054fd173d3939fdc54432 485 PRINTS PR00834 HtrA/DegQ protease family signature 243 260 1.5E-48 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_07845 ff048b70887054fd173d3939fdc54432 485 Pfam PF13365 Trypsin-like peptidase domain 117 250 1.6E-34 T 11-10-2018 APT56_07845 ff048b70887054fd173d3939fdc54432 485 Gene3D G3DSA:2.40.10.120 59 283 1.8E-78 T 11-10-2018 APT56_07845 ff048b70887054fd173d3939fdc54432 485 Gene3D G3DSA:2.30.42.10 400 482 8.6E-17 T 11-10-2018 APT56_06940 1749e0ba0f4d58d985fff5275c2152d1 629 SUPERFAMILY SSF56801 5 625 2.88E-154 T 11-10-2018 APT56_06940 1749e0ba0f4d58d985fff5275c2152d1 629 TIGRFAM TIGR02316 propion_prpE: propionate--CoA ligase 5 629 0.0 T 11-10-2018 IPR012694 Propionate--CoA ligase GO:0019629|GO:0050218 KEGG: 00640+6.2.1.17|MetaCyc: PWY-3941|MetaCyc: PWY-5104|MetaCyc: PWY-5747 APT56_06940 1749e0ba0f4d58d985fff5275c2152d1 629 ProSitePatterns PS00455 Putative AMP-binding domain signature. 238 249 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_06940 1749e0ba0f4d58d985fff5275c2152d1 629 Pfam PF00501 AMP-binding enzyme 62 502 4.9E-76 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_06940 1749e0ba0f4d58d985fff5275c2152d1 629 Gene3D G3DSA:3.30.300.30 498 629 8.9E-26 T 11-10-2018 APT56_06940 1749e0ba0f4d58d985fff5275c2152d1 629 Gene3D G3DSA:3.40.50.12780 30 495 2.5E-94 T 11-10-2018 APT56_06940 1749e0ba0f4d58d985fff5275c2152d1 629 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 5 58 1.4E-21 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 APT56_06940 1749e0ba0f4d58d985fff5275c2152d1 629 Pfam PF13193 AMP-binding enzyme C-terminal domain 511 594 2.1E-22 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_18755 264ba2e1b24fd75059ba92b437a133b6 534 Pfam PF01471 Putative peptidoglycan binding domain 476 531 1.8E-12 T 11-10-2018 IPR002477 Peptidoglycan binding-like APT56_18755 264ba2e1b24fd75059ba92b437a133b6 534 SUPERFAMILY SSF53955 141 461 7.59E-67 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_18755 264ba2e1b24fd75059ba92b437a133b6 534 Pfam PF13406 Transglycosylase SLT domain 153 453 2.7E-77 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 APT56_18755 264ba2e1b24fd75059ba92b437a133b6 534 SUPERFAMILY SSF47090 463 531 6.87E-17 T 11-10-2018 IPR036365 PGBD-like superfamily APT56_18755 264ba2e1b24fd75059ba92b437a133b6 534 Gene3D G3DSA:1.10.8.350 167 326 1.1E-62 T 11-10-2018 APT56_18755 264ba2e1b24fd75059ba92b437a133b6 534 Gene3D G3DSA:1.10.101.10 463 534 1.2E-14 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 APT56_18755 264ba2e1b24fd75059ba92b437a133b6 534 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 153 458 7.2E-75 T 11-10-2018 IPR011970 Lytic murein transglycosylase APT56_18755 264ba2e1b24fd75059ba92b437a133b6 534 Gene3D G3DSA:1.10.530.10 194 453 1.1E-62 T 11-10-2018 APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 SUPERFAMILY SSF53383 14 437 3.52E-104 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 Pfam PF02347 Glycine cleavage system P-protein 448 733 3.6E-13 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 Pfam PF02347 Glycine cleavage system P-protein 14 435 5.1E-178 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 14 950 0.0 T 11-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 SUPERFAMILY SSF53383 479 951 1.08E-97 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 Gene3D G3DSA:3.40.640.10 92 349 2.4E-107 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 Gene3D G3DSA:3.40.640.10 522 744 5.7E-58 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 Gene3D G3DSA:3.90.1150.10 764 904 5.8E-42 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_24765 c64a0c1f4a0132df65a40d5b1e793a4c 957 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 5 956 25.35 T 11-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 APT56_15250 57f046c75d4cb318d79cd60217e47970 163 Pfam PF14437 MafB19-like deaminase 11 157 2.7E-30 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 APT56_15250 57f046c75d4cb318d79cd60217e47970 163 SUPERFAMILY SSF53927 8 157 1.19E-55 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APT56_15250 57f046c75d4cb318d79cd60217e47970 163 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 61 98 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 APT56_15250 57f046c75d4cb318d79cd60217e47970 163 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 15 157 47.494 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 APT56_15250 57f046c75d4cb318d79cd60217e47970 163 Gene3D G3DSA:3.40.140.10 6 162 6.7E-59 T 11-10-2018 APT56_05925 f4c8ceb644f569951f15f09149dd4b1d 287 Pfam PF13527 Acetyltransferase (GNAT) domain 6 129 5.2E-16 T 11-10-2018 APT56_05925 f4c8ceb644f569951f15f09149dd4b1d 287 Gene3D G3DSA:3.40.630.30 1 136 3.0E-13 T 11-10-2018 APT56_05925 f4c8ceb644f569951f15f09149dd4b1d 287 SUPERFAMILY SSF55729 7 127 5.32E-17 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_07220 875031fd2879fb887248829063687433 566 Gene3D G3DSA:3.30.70.360 365 478 5.4E-126 T 11-10-2018 APT56_07220 875031fd2879fb887248829063687433 566 Gene3D G3DSA:3.40.630.10 173 554 5.4E-126 T 11-10-2018 APT56_07220 875031fd2879fb887248829063687433 566 SUPERFAMILY SSF55031 365 478 3.14E-28 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_07220 875031fd2879fb887248829063687433 566 SUPERFAMILY SSF53187 155 562 6.57E-75 T 11-10-2018 APT56_07220 875031fd2879fb887248829063687433 566 Pfam PF07687 Peptidase dimerisation domain 364 461 9.8E-6 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_07220 875031fd2879fb887248829063687433 566 Pfam PF01546 Peptidase family M20/M25/M40 231 558 2.1E-25 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_07220 875031fd2879fb887248829063687433 566 SUPERFAMILY SSF158694 4 146 1.31E-17 T 11-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 APT56_07220 875031fd2879fb887248829063687433 566 Gene3D G3DSA:1.10.3330.10 2 72 1.3E-7 T 11-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 APT56_07220 875031fd2879fb887248829063687433 566 Gene3D G3DSA:1.10.3330.10 73 148 3.5E-8 T 11-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 APT56_07220 875031fd2879fb887248829063687433 566 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 162 553 3.4E-103 T 11-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 APT56_23100 5a28dd8143d16ef284af18e3c831f57e 232 SMART SM00382 26 211 1.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23100 5a28dd8143d16ef284af18e3c831f57e 232 SUPERFAMILY SSF52540 2 221 2.2E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_23100 5a28dd8143d16ef284af18e3c831f57e 232 Gene3D G3DSA:3.40.50.300 1 227 1.1E-59 T 11-10-2018 APT56_23100 5a28dd8143d16ef284af18e3c831f57e 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 2.5E-104 T 11-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE APT56_23100 5a28dd8143d16ef284af18e3c831f57e 232 Pfam PF00005 ABC transporter 17 161 1.4E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_07750 ead680645632680e51052c388b4c1000 309 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 25 305 1.2E-108 T 11-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 APT56_07750 ead680645632680e51052c388b4c1000 309 Gene3D G3DSA:1.10.10.10 21 104 1.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07750 ead680645632680e51052c388b4c1000 309 Pfam PF07848 PaaX-like protein 22 91 2.2E-27 T 11-10-2018 IPR012906 PaaX-like, N-terminal APT56_07750 ead680645632680e51052c388b4c1000 309 Gene3D G3DSA:3.30.70.2670 105 186 1.1E-27 T 11-10-2018 APT56_07750 ead680645632680e51052c388b4c1000 309 Gene3D G3DSA:1.20.58.1460 20 266 1.1E-27 T 11-10-2018 APT56_07750 ead680645632680e51052c388b4c1000 309 Pfam PF08223 PaaX-like protein C-terminal domain 190 283 4.5E-29 T 11-10-2018 IPR013225 PaaX-like, C-terminal APT56_07750 ead680645632680e51052c388b4c1000 309 PIRSF PIRSF020623 2 308 1.0E-108 T 11-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 APT56_23220 ba3ec27573471c064424626261d2b5b1 306 SUPERFAMILY SSF46785 1 113 4.3E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23220 ba3ec27573471c064424626261d2b5b1 306 Gene3D G3DSA:3.40.190.290 93 300 1.2E-38 T 11-10-2018 APT56_23220 ba3ec27573471c064424626261d2b5b1 306 Pfam PF03466 LysR substrate binding domain 89 294 1.3E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_23220 ba3ec27573471c064424626261d2b5b1 306 SUPERFAMILY SSF53850 90 297 1.67E-41 T 11-10-2018 APT56_23220 ba3ec27573471c064424626261d2b5b1 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.0E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23220 ba3ec27573471c064424626261d2b5b1 306 Gene3D G3DSA:1.10.10.10 3 91 1.3E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10925 cdf7773677d9afd1f12069319e217e15 402 Gene3D G3DSA:3.20.20.70 18 402 7.0E-118 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_10925 cdf7773677d9afd1f12069319e217e15 402 Pfam PF01070 FMN-dependent dehydrogenase 35 399 2.1E-120 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 APT56_10925 cdf7773677d9afd1f12069319e217e15 402 SUPERFAMILY SSF51395 25 396 2.87E-85 T 11-10-2018 APT56_10925 cdf7773677d9afd1f12069319e217e15 402 PIRSF PIRSF000138 10 402 2.5E-122 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_10925 cdf7773677d9afd1f12069319e217e15 402 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 297 303 - T 11-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_21145 4851fea5175a506b79d3e17cd7f4a619 274 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 274 150.987 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT56_21145 4851fea5175a506b79d3e17cd7f4a619 274 PIRSF PIRSF004750 1 274 1.5E-123 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT56_21145 4851fea5175a506b79d3e17cd7f4a619 274 Gene3D G3DSA:3.30.1130.10 137 274 1.8E-59 T 11-10-2018 APT56_21145 4851fea5175a506b79d3e17cd7f4a619 274 Gene3D G3DSA:3.30.1130.10 14 131 3.8E-42 T 11-10-2018 APT56_21145 4851fea5175a506b79d3e17cd7f4a619 274 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 14 122 5.6E-46 T 11-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT56_21145 4851fea5175a506b79d3e17cd7f4a619 274 TIGRFAM TIGR03138 QueF: queuine synthase 2 274 7.7E-127 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT56_21145 4851fea5175a506b79d3e17cd7f4a619 274 SUPERFAMILY SSF55620 178 257 1.33E-11 T 11-10-2018 APT56_21145 4851fea5175a506b79d3e17cd7f4a619 274 Pfam PF14489 QueF-like protein 187 262 3.7E-28 T 11-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APT56_11515 074b9035d961553a16d15b3a0c72864d 433 Pfam PF07690 Major Facilitator Superfamily 28 389 4.6E-48 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_11515 074b9035d961553a16d15b3a0c72864d 433 SUPERFAMILY SSF103473 11 425 1.16E-80 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_11515 074b9035d961553a16d15b3a0c72864d 433 Gene3D G3DSA:1.20.1250.20 9 427 1.6E-80 T 11-10-2018 APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 Gene3D G3DSA:3.30.420.40 5 241 1.1E-61 T 11-10-2018 APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 Gene3D G3DSA:3.40.630.30 268 416 1.9E-41 T 11-10-2018 APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 274 406 2.0E-29 T 11-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 Gene3D G3DSA:3.30.420.40 100 207 1.1E-61 T 11-10-2018 APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 SUPERFAMILY SSF53067 4 107 7.77E-23 T 11-10-2018 APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 Pfam PF00583 Acetyltransferase (GNAT) family 288 383 5.0E-16 T 11-10-2018 IPR000182 GNAT domain APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 Pfam PF00814 Glycoprotease family 37 138 1.0E-25 T 11-10-2018 IPR000905 Gcp-like domain APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 SUPERFAMILY SSF53067 114 236 1.22E-13 T 11-10-2018 APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 SUPERFAMILY SSF55729 269 411 8.06E-33 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_06515 cc11ab54cd4b17d937b4ebc7f2bc60cd 422 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 238 2.6E-57 T 11-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 APT56_11655 ea0918ab4add6fcb5f513f11cdce86ac 195 Pfam PF04612 Type II secretion system (T2SS), protein M 23 186 2.8E-26 T 11-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 APT56_11655 ea0918ab4add6fcb5f513f11cdce86ac 195 SUPERFAMILY SSF103054 108 170 3.4E-6 T 11-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily APT56_01140 c4a647c22e78e16880928139b4e21cca 462 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 286 434 1.7E-42 T 11-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 APT56_01140 c4a647c22e78e16880928139b4e21cca 462 PIRSF PIRSF038885 342 462 9.4E-24 T 11-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 APT56_01140 c4a647c22e78e16880928139b4e21cca 462 PIRSF PIRSF038885 4 345 3.3E-133 T 11-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 APT56_01140 c4a647c22e78e16880928139b4e21cca 462 Pfam PF00033 Cytochrome b/b6/petB 31 219 6.8E-68 T 11-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 APT56_01140 c4a647c22e78e16880928139b4e21cca 462 SUPERFAMILY SSF81648 290 336 2.4E-9 T 11-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 APT56_01140 c4a647c22e78e16880928139b4e21cca 462 SUPERFAMILY SSF81648 355 447 6.54E-20 T 11-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 APT56_01140 c4a647c22e78e16880928139b4e21cca 462 SUPERFAMILY SSF81342 15 288 1.43E-96 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT56_01140 c4a647c22e78e16880928139b4e21cca 462 Gene3D G3DSA:1.20.810.10 2 337 1.3E-131 T 11-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 APT56_01140 c4a647c22e78e16880928139b4e21cca 462 Gene3D G3DSA:1.20.810.10 338 462 6.7E-25 T 11-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 APT56_03165 a3d7ba83ad9a8d64a48ab4cc82d2cbd9 133 SMART SM00732 4 104 1.3E-28 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 APT56_03165 a3d7ba83ad9a8d64a48ab4cc82d2cbd9 133 Gene3D G3DSA:3.30.420.140 3 130 4.2E-36 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 APT56_03165 a3d7ba83ad9a8d64a48ab4cc82d2cbd9 133 Pfam PF03652 Holliday junction resolvase 5 129 7.6E-35 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APT56_03165 a3d7ba83ad9a8d64a48ab4cc82d2cbd9 133 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 131 21.012 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APT56_03165 a3d7ba83ad9a8d64a48ab4cc82d2cbd9 133 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 128 5.8E-29 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APT56_03165 a3d7ba83ad9a8d64a48ab4cc82d2cbd9 133 SUPERFAMILY SSF53098 5 129 2.88E-33 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_06520 e3b97744d1370b71e87989cf04f3ae08 294 Gene3D G3DSA:3.40.470.10 110 294 2.8E-70 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_06520 e3b97744d1370b71e87989cf04f3ae08 294 SUPERFAMILY SSF52141 110 291 1.34E-60 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_06520 e3b97744d1370b71e87989cf04f3ae08 294 Pfam PF03167 Uracil DNA glycosylase superfamily 136 288 4.2E-47 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_06520 e3b97744d1370b71e87989cf04f3ae08 294 SMART SM00987 136 288 2.0E-42 T 11-10-2018 APT56_06520 e3b97744d1370b71e87989cf04f3ae08 294 SMART SM00986 136 288 2.0E-42 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APT56_06520 e3b97744d1370b71e87989cf04f3ae08 294 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 122 288 4.5E-63 T 11-10-2018 IPR005273 Uracil-DNA glycosylase family 4 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 Gene3D G3DSA:2.40.30.10 1 105 2.4E-21 T 11-10-2018 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 SUPERFAMILY SSF52343 102 233 1.05E-28 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 Gene3D G3DSA:3.10.20.30 229 325 3.0E-24 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 247 316 2.0E-8 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 PRINTS PR00409 Phthalate dioxygenase reductase family signature 144 153 3.6E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 PRINTS PR00409 Phthalate dioxygenase reductase family signature 51 65 3.6E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 PRINTS PR00409 Phthalate dioxygenase reductase family signature 196 204 3.6E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 PRINTS PR00409 Phthalate dioxygenase reductase family signature 28 38 3.6E-10 T 11-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 274 282 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 Gene3D G3DSA:3.40.50.80 112 228 3.9E-27 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 SUPERFAMILY SSF63380 2 104 5.38E-18 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 SUPERFAMILY SSF54292 218 323 1.44E-25 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_05120 219c044b4e7d4d750b70c54dcf86399b 325 Pfam PF00175 Oxidoreductase NAD-binding domain 120 209 1.2E-6 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_06145 65730a55db74d406d0e1338371b7ba11 360 SUPERFAMILY SSF53850 45 327 5.26E-41 T 11-10-2018 APT56_06145 65730a55db74d406d0e1338371b7ba11 360 Pfam PF13531 Bacterial extracellular solute-binding protein 46 312 1.7E-20 T 11-10-2018 APT56_06145 65730a55db74d406d0e1338371b7ba11 360 Gene3D G3DSA:3.40.190.10 45 337 1.3E-111 T 11-10-2018 APT56_06145 65730a55db74d406d0e1338371b7ba11 360 Gene3D G3DSA:3.40.190.10 146 350 1.3E-111 T 11-10-2018 APT56_21500 341e2da3e8c3a3ca58388617e1c72eb8 220 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 16 175 23.279 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 APT56_21500 341e2da3e8c3a3ca58388617e1c72eb8 220 Gene3D G3DSA:3.30.160.150 44 181 1.9E-40 T 11-10-2018 APT56_21500 341e2da3e8c3a3ca58388617e1c72eb8 220 Pfam PF04390 Lipopolysaccharide-assembly 43 170 2.0E-8 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 APT56_12980 494c4684850388df21f3188ed943d167 431 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 428 3.0E-141 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_12980 494c4684850388df21f3188ed943d167 431 PIRSF PIRSF001434 1 431 9.2E-131 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_12980 494c4684850388df21f3188ed943d167 431 SUPERFAMILY SSF53383 9 429 2.13E-130 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_12980 494c4684850388df21f3188ed943d167 431 Gene3D G3DSA:3.40.640.10 10 293 2.9E-102 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_12980 494c4684850388df21f3188ed943d167 431 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 11 429 6.3E-197 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 APT56_12980 494c4684850388df21f3188ed943d167 431 Gene3D G3DSA:3.90.1150.10 297 431 5.9E-50 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_12980 494c4684850388df21f3188ed943d167 431 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 204 218 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_01330 b72a7be96039d7d27568a8a134fedd1a 329 Gene3D G3DSA:2.40.100.10 183 328 1.2E-41 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_01330 b72a7be96039d7d27568a8a134fedd1a 329 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 8 327 2.7E-83 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_01330 b72a7be96039d7d27568a8a134fedd1a 329 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 30 303 2.8E-85 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_01330 b72a7be96039d7d27568a8a134fedd1a 329 SUPERFAMILY SSF50891 186 309 1.02E-8 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_01330 b72a7be96039d7d27568a8a134fedd1a 329 SMART SM00797 29 321 4.0E-140 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B APT56_05770 b94a9bbfc0ea4846a924c1f68d7a39a3 335 Gene3D G3DSA:3.40.50.300 7 334 3.4E-98 T 11-10-2018 APT56_05770 b94a9bbfc0ea4846a924c1f68d7a39a3 335 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 311 8.4E-17 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_05770 b94a9bbfc0ea4846a924c1f68d7a39a3 335 SMART SM00382 38 243 3.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05770 b94a9bbfc0ea4846a924c1f68d7a39a3 335 Pfam PF00005 ABC transporter 30 193 4.0E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_05770 b94a9bbfc0ea4846a924c1f68d7a39a3 335 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 243 330 8.8E-25 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_05770 b94a9bbfc0ea4846a924c1f68d7a39a3 335 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05770 b94a9bbfc0ea4846a924c1f68d7a39a3 335 SUPERFAMILY SSF52540 9 264 5.11E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 Gene3D G3DSA:3.40.50.720 162 445 1.2E-82 T 11-10-2018 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 SMART SM00919 164 401 1.3E-142 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 750 8.8E-96 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 SUPERFAMILY SSF51735 164 443 1.39E-85 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 Gene3D G3DSA:3.40.50.10950 446 750 6.2E-92 T 11-10-2018 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 SMART SM01274 18 152 1.6E-74 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 Gene3D G3DSA:3.40.50.10750 573 726 6.2E-92 T 11-10-2018 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 Pfam PF00390 Malic enzyme, N-terminal domain 19 152 2.7E-26 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 SUPERFAMILY SSF53659 430 753 1.36E-89 T 11-10-2018 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 Pfam PF03949 Malic enzyme, NAD binding domain 166 361 2.5E-24 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 Gene3D G3DSA:3.40.50.10380 1 161 1.5E-64 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 SUPERFAMILY SSF53223 11 162 7.91E-49 T 11-10-2018 APT56_07200 52522c8efdf6bc4470ba38b037c39618 765 PIRSF PIRSF036684 1 758 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 APT56_20845 061fc8934a189a8ae40fe62a49ed70ae 245 Gene3D G3DSA:1.10.10.10 130 240 2.8E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20845 061fc8934a189a8ae40fe62a49ed70ae 245 Pfam PF00072 Response regulator receiver domain 7 118 1.4E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20845 061fc8934a189a8ae40fe62a49ed70ae 245 SMART SM00448 5 117 1.4E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20845 061fc8934a189a8ae40fe62a49ed70ae 245 SUPERFAMILY SSF52172 4 134 5.69E-40 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20845 061fc8934a189a8ae40fe62a49ed70ae 245 Gene3D G3DSA:3.40.50.2300 1 129 4.6E-37 T 11-10-2018 APT56_20845 061fc8934a189a8ae40fe62a49ed70ae 245 SMART SM00862 159 235 1.2E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_20845 061fc8934a189a8ae40fe62a49ed70ae 245 SUPERFAMILY SSF46894 136 236 5.1E-24 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_20845 061fc8934a189a8ae40fe62a49ed70ae 245 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 235 9.0E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_24715 7a315f5b3f0cd48619928c73242e943c 441 Pfam PF00202 Aminotransferase class-III 28 437 2.1E-84 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_24715 7a315f5b3f0cd48619928c73242e943c 441 PIRSF PIRSF000521 26 440 9.3E-23 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_24715 7a315f5b3f0cd48619928c73242e943c 441 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 251 288 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_24715 7a315f5b3f0cd48619928c73242e943c 441 Gene3D G3DSA:3.90.1150.10 26 432 8.9E-138 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_24715 7a315f5b3f0cd48619928c73242e943c 441 Gene3D G3DSA:3.40.640.10 62 343 8.9E-138 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_24715 7a315f5b3f0cd48619928c73242e943c 441 SUPERFAMILY SSF53383 1 440 4.98E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_10725 c1edeae23c736133ff2eb01b5b8ccf9b 398 Pfam PF07690 Major Facilitator Superfamily 11 306 1.9E-29 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_10725 c1edeae23c736133ff2eb01b5b8ccf9b 398 SUPERFAMILY SSF103473 5 386 3.01E-46 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_10725 c1edeae23c736133ff2eb01b5b8ccf9b 398 Gene3D G3DSA:1.20.1250.20 3 386 1.3E-38 T 11-10-2018 APT56_20210 4fbab6dded1e9727fff40a5a3a1c10f1 424 SUPERFAMILY SSF52172 5 133 5.69E-23 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20210 4fbab6dded1e9727fff40a5a3a1c10f1 424 Pfam PF00563 EAL domain 154 385 6.8E-54 T 11-10-2018 IPR001633 EAL domain APT56_20210 4fbab6dded1e9727fff40a5a3a1c10f1 424 SUPERFAMILY SSF141868 155 398 9.15E-61 T 11-10-2018 IPR035919 EAL domain superfamily APT56_20210 4fbab6dded1e9727fff40a5a3a1c10f1 424 Gene3D G3DSA:3.20.20.450 151 403 2.8E-66 T 11-10-2018 IPR035919 EAL domain superfamily APT56_20210 4fbab6dded1e9727fff40a5a3a1c10f1 424 SMART SM00052 150 391 8.6E-52 T 11-10-2018 IPR001633 EAL domain APT56_20210 4fbab6dded1e9727fff40a5a3a1c10f1 424 Pfam PF00072 Response regulator receiver domain 9 92 5.5E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20210 4fbab6dded1e9727fff40a5a3a1c10f1 424 Gene3D G3DSA:3.40.50.2300 1 134 2.6E-23 T 11-10-2018 APT56_20210 4fbab6dded1e9727fff40a5a3a1c10f1 424 SMART SM00448 7 124 5.2E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 Gene3D G3DSA:3.30.300.20 185 296 1.1E-36 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 Pfam PF07650 KH domain 208 283 1.0E-15 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 168 1.6E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 Hamap MF_00367 GTPase Era [era]. 6 295 34.103 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 Pfam PF01926 50S ribosome-binding GTPase 11 122 1.0E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 SUPERFAMILY SSF54814 181 296 2.49E-37 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 SUPERFAMILY SSF52540 11 202 1.63E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 79 97 6.5E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 6.5E-7 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 278 1.7E-77 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_06845 8ac9dc0476f79dbcf76a3dd05cb37774 296 Gene3D G3DSA:3.40.50.300 7 183 7.9E-45 T 11-10-2018 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 Pfam PF13091 PLD-like domain 237 357 5.2E-24 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 Pfam PF13091 PLD-like domain 29 140 3.0E-16 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 SMART SM00155 306 332 0.024 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 SMART SM00155 116 143 2.3E-4 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 Gene3D G3DSA:3.30.870.10 8 204 1.0E-35 T 11-10-2018 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 SUPERFAMILY SSF56024 189 377 2.69E-38 T 11-10-2018 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 Hamap MF_01917 Cardiolipin synthase B [clsB]. 7 403 46.601 T 11-10-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 Gene3D G3DSA:3.30.870.10 218 362 1.9E-26 T 11-10-2018 APT56_27425 6114dc697a3cbec4eb5d2801c78eb418 403 SUPERFAMILY SSF56024 9 183 2.88E-40 T 11-10-2018 APT56_05100 d78ff4b287551628bba88600353033d9 391 Gene3D G3DSA:3.40.47.10 12 388 7.7E-79 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_05100 d78ff4b287551628bba88600353033d9 391 PIRSF PIRSF000429 22 374 3.9E-12 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_05100 d78ff4b287551628bba88600353033d9 391 SUPERFAMILY SSF53901 33 233 3.13E-14 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_05100 d78ff4b287551628bba88600353033d9 391 SUPERFAMILY SSF53901 250 373 1.09E-18 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_18665 0e85dc86751f0aa0107484e66a4e4400 110 SMART SM00834 1 41 2.8E-14 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_18665 0e85dc86751f0aa0107484e66a4e4400 110 Pfam PF09723 Zinc ribbon domain 1 39 1.4E-11 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_18665 0e85dc86751f0aa0107484e66a4e4400 110 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 45 4.0E-15 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_12785 2ae557310ba42958d4344f21a0368c62 212 Pfam PF01292 Prokaryotic cytochrome b561 22 211 2.8E-24 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APT56_12785 2ae557310ba42958d4344f21a0368c62 212 Gene3D G3DSA:1.20.950.20 18 201 4.5E-19 T 11-10-2018 APT56_12785 2ae557310ba42958d4344f21a0368c62 212 SUPERFAMILY SSF81342 21 212 6.67E-33 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT56_12785 2ae557310ba42958d4344f21a0368c62 212 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 177 199 3.7E-5 T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 APT56_12785 2ae557310ba42958d4344f21a0368c62 212 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 25 48 3.7E-5 T 11-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 APT56_13030 7a102de2ef44c1c4c3c455fea2917324 229 Pfam PF07729 FCD domain 90 208 6.1E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_13030 7a102de2ef44c1c4c3c455fea2917324 229 SMART SM00345 18 76 3.3E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13030 7a102de2ef44c1c4c3c455fea2917324 229 Gene3D G3DSA:1.20.120.530 82 221 2.6E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_13030 7a102de2ef44c1c4c3c455fea2917324 229 SMART SM00895 86 210 5.2E-15 T 11-10-2018 IPR011711 GntR, C-terminal APT56_13030 7a102de2ef44c1c4c3c455fea2917324 229 SUPERFAMILY SSF46785 9 80 3.43E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13030 7a102de2ef44c1c4c3c455fea2917324 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 76 1.4E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13030 7a102de2ef44c1c4c3c455fea2917324 229 SUPERFAMILY SSF48008 85 217 1.02E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_13030 7a102de2ef44c1c4c3c455fea2917324 229 Gene3D G3DSA:1.10.10.10 13 77 5.4E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04400 b01118f725d519c487d2d1c3d7e68080 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 324 3.7E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04400 b01118f725d519c487d2d1c3d7e68080 329 PIRSF PIRSF017082 1 327 1.5E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04400 b01118f725d519c487d2d1c3d7e68080 329 SUPERFAMILY SSF53850 118 291 5.9E-10 T 11-10-2018 APT56_04400 b01118f725d519c487d2d1c3d7e68080 329 Gene3D G3DSA:3.40.190.10 129 253 1.2E-103 T 11-10-2018 APT56_04400 b01118f725d519c487d2d1c3d7e68080 329 Gene3D G3DSA:3.40.190.150 32 318 1.2E-103 T 11-10-2018 APT56_25740 0ed5b037d2bfbcaa592db30cde7c1f47 275 SUPERFAMILY SSF55781 95 267 2.88E-46 T 11-10-2018 APT56_25740 0ed5b037d2bfbcaa592db30cde7c1f47 275 SMART SM00346 24 114 9.7E-22 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_25740 0ed5b037d2bfbcaa592db30cde7c1f47 275 Gene3D G3DSA:1.10.10.10 16 94 5.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25740 0ed5b037d2bfbcaa592db30cde7c1f47 275 Gene3D G3DSA:3.30.450.40 95 270 1.1E-50 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_25740 0ed5b037d2bfbcaa592db30cde7c1f47 275 SUPERFAMILY SSF46785 24 97 3.51E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25740 0ed5b037d2bfbcaa592db30cde7c1f47 275 Pfam PF01614 Bacterial transcriptional regulator 144 267 1.1E-29 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_25740 0ed5b037d2bfbcaa592db30cde7c1f47 275 Pfam PF09339 IclR helix-turn-helix domain 26 75 2.0E-14 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_07095 bf342f0a6c0e2bf25544d94a084a55ab 555 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 535 5.3E-23 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_07095 bf342f0a6c0e2bf25544d94a084a55ab 555 ProSitePatterns PS00455 Putative AMP-binding domain signature. 189 200 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_07095 bf342f0a6c0e2bf25544d94a084a55ab 555 Gene3D G3DSA:3.30.300.30 443 555 6.4E-32 T 11-10-2018 APT56_07095 bf342f0a6c0e2bf25544d94a084a55ab 555 SUPERFAMILY SSF56801 5 547 1.03E-150 T 11-10-2018 APT56_07095 bf342f0a6c0e2bf25544d94a084a55ab 555 Pfam PF00501 AMP-binding enzyme 32 446 3.2E-85 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_07095 bf342f0a6c0e2bf25544d94a084a55ab 555 Gene3D G3DSA:3.40.50.12780 12 442 1.4E-116 T 11-10-2018 APT56_14405 6bc7c37e0f689f7f055d8f1fe0c2bf32 548 Pfam PF13598 Domain of unknown function (DUF4139) 217 540 8.4E-64 T 11-10-2018 IPR037291 Domain of unknown function DUF4139 APT56_14405 6bc7c37e0f689f7f055d8f1fe0c2bf32 548 Pfam PF13600 N-terminal domain of unknown function (DUF4140) 29 127 4.7E-23 T 11-10-2018 IPR025554 Domain of unknown function DUF4140 APT56_14405 6bc7c37e0f689f7f055d8f1fe0c2bf32 548 TIGRFAM TIGR02231 TIGR02231: conserved hypothetical protein 26 545 2.6E-146 T 11-10-2018 IPR011935 Conserved hypothetical protein CHP02231 APT56_26330 c908c1eccea051f237945d505efe22f5 378 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 335 7.0E-137 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 APT56_26330 c908c1eccea051f237945d505efe22f5 378 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 5.1E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_26330 c908c1eccea051f237945d505efe22f5 378 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 5.1E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_26330 c908c1eccea051f237945d505efe22f5 378 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 5.1E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_26330 c908c1eccea051f237945d505efe22f5 378 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 5.1E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_26330 c908c1eccea051f237945d505efe22f5 378 Gene3D G3DSA:2.70.210.12 1 158 4.7E-58 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily APT56_26330 c908c1eccea051f237945d505efe22f5 378 Pfam PF01018 GTP1/OBG 4 158 1.8E-58 T 11-10-2018 IPR006169 GTP1/OBG domain APT56_26330 c908c1eccea051f237945d505efe22f5 378 Gene3D G3DSA:3.40.50.300 159 349 4.2E-49 T 11-10-2018 APT56_26330 c908c1eccea051f237945d505efe22f5 378 PIRSF PIRSF002401 1 372 1.0E-132 T 11-10-2018 IPR035101 GTP-binding protein, Obg-type APT56_26330 c908c1eccea051f237945d505efe22f5 378 Hamap MF_01454 GTPase Obg [obg]. 2 336 46.878 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 APT56_26330 c908c1eccea051f237945d505efe22f5 378 SUPERFAMILY SSF52540 151 343 7.88E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26330 c908c1eccea051f237945d505efe22f5 378 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 11-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 APT56_26330 c908c1eccea051f237945d505efe22f5 378 Pfam PF01926 50S ribosome-binding GTPase 161 289 7.4E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_26330 c908c1eccea051f237945d505efe22f5 378 SUPERFAMILY SSF82051 2 158 6.41E-56 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily APT56_03985 d3e7ec58cfbf855c6b8c5382b947f30d 300 Pfam PF02653 Branched-chain amino acid transport system / permease component 15 288 1.3E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_15865 c11450f93977352cc90f748c65e27f02 550 SUPERFAMILY SSF54373 290 473 1.28E-61 T 11-10-2018 APT56_15865 c11450f93977352cc90f748c65e27f02 550 PIRSF PIRSF000137 2 540 7.9E-158 T 11-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_15865 c11450f93977352cc90f748c65e27f02 550 Gene3D G3DSA:3.30.410.40 151 470 5.4E-187 T 11-10-2018 APT56_15865 c11450f93977352cc90f748c65e27f02 550 Gene3D G3DSA:4.10.450.10 38 196 5.4E-187 T 11-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 APT56_15865 c11450f93977352cc90f748c65e27f02 550 Pfam PF00732 GMC oxidoreductase 5 295 5.8E-90 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_15865 c11450f93977352cc90f748c65e27f02 550 Pfam PF05199 GMC oxidoreductase 387 525 2.0E-42 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT56_15865 c11450f93977352cc90f748c65e27f02 550 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 254 268 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_15865 c11450f93977352cc90f748c65e27f02 550 SUPERFAMILY SSF51905 2 533 1.25E-92 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15865 c11450f93977352cc90f748c65e27f02 550 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_15865 c11450f93977352cc90f748c65e27f02 550 Gene3D G3DSA:1.10.1220.110 97 150 5.4E-187 T 11-10-2018 APT56_15865 c11450f93977352cc90f748c65e27f02 550 Gene3D G3DSA:3.50.50.60 5 529 5.4E-187 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02670 3fa95a6b43fa94faea9accf992925de5 226 Gene3D G3DSA:3.40.50.150 3 224 9.4E-50 T 11-10-2018 APT56_02670 3fa95a6b43fa94faea9accf992925de5 226 SUPERFAMILY SSF53335 8 189 1.69E-39 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_02670 3fa95a6b43fa94faea9accf992925de5 226 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 17 211 5.2E-36 T 11-10-2018 APT56_15165 4df4923c0fd777019999e7b9e7b8480d 286 Pfam PF01551 Peptidase family M23 185 279 2.3E-30 T 11-10-2018 IPR016047 Peptidase M23 APT56_15165 4df4923c0fd777019999e7b9e7b8480d 286 SUPERFAMILY SSF51261 65 283 1.62E-48 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_15165 4df4923c0fd777019999e7b9e7b8480d 286 Gene3D G3DSA:2.70.70.10 154 284 5.2E-35 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_15165 4df4923c0fd777019999e7b9e7b8480d 286 SMART SM00257 64 108 6.7E-17 T 11-10-2018 IPR018392 LysM domain APT56_15165 4df4923c0fd777019999e7b9e7b8480d 286 Gene3D G3DSA:3.10.350.10 53 113 3.2E-18 T 11-10-2018 IPR036779 LysM domain superfamily APT56_15165 4df4923c0fd777019999e7b9e7b8480d 286 Pfam PF01476 LysM domain 65 106 1.0E-15 T 11-10-2018 IPR018392 LysM domain APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 Pfam PF01588 Putative tRNA binding domain 588 668 1.7E-21 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 SUPERFAMILY SSF52374 4 394 1.25E-89 T 11-10-2018 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 561 37.293 T 11-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 Gene3D G3DSA:3.40.50.620 6 394 2.1E-135 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 Gene3D G3DSA:1.10.730.10 399 540 2.6E-24 T 11-10-2018 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 Gene3D G3DSA:2.40.50.140 573 688 5.3E-32 T 11-10-2018 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 Gene3D G3DSA:2.20.28.20 139 173 2.1E-135 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 572 688 2.9E-39 T 11-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 SUPERFAMILY SSF50249 581 687 6.12E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 SUPERFAMILY SSF57770 139 173 2.49E-12 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 SUPERFAMILY SSF47323 396 596 7.29E-30 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 1.7E-22 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 PRINTS PR01041 Methionyl-tRNA synthetase signature 300 315 1.7E-22 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 1.7E-22 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 1.7E-22 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 PRINTS PR01041 Methionyl-tRNA synthetase signature 394 405 1.7E-22 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 PRINTS PR01041 Methionyl-tRNA synthetase signature 261 272 1.7E-22 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 Pfam PF09334 tRNA synthetases class I (M) 6 406 2.2E-136 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_24845 4d0aaecc114caab3f94144aa85612f61 688 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 550 4.6E-147 T 11-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APT56_21030 351dc17fb7309230c949b595c97bdbd4 324 PIRSF PIRSF017082 1 323 2.2E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21030 351dc17fb7309230c949b595c97bdbd4 324 Gene3D G3DSA:3.40.190.150 30 313 4.4E-107 T 11-10-2018 APT56_21030 351dc17fb7309230c949b595c97bdbd4 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 320 1.9E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21030 351dc17fb7309230c949b595c97bdbd4 324 Gene3D G3DSA:3.40.190.10 126 249 4.4E-107 T 11-10-2018 APT56_21030 351dc17fb7309230c949b595c97bdbd4 324 SUPERFAMILY SSF53850 73 282 2.33E-11 T 11-10-2018 APT56_26205 75250732280380c531c8b197c3a51dce 443 ProSitePatterns PS00216 Sugar transport proteins signature 1. 305 321 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_26205 75250732280380c531c8b197c3a51dce 443 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_26205 75250732280380c531c8b197c3a51dce 443 Gene3D G3DSA:1.20.1250.20 20 443 1.5E-61 T 11-10-2018 APT56_26205 75250732280380c531c8b197c3a51dce 443 Pfam PF07690 Major Facilitator Superfamily 33 302 1.8E-23 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_26205 75250732280380c531c8b197c3a51dce 443 SUPERFAMILY SSF103473 20 435 5.62E-66 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_12360 d102c4520c11e24d66163914bc577900 294 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 261 267 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APT56_12360 d102c4520c11e24d66163914bc577900 294 SUPERFAMILY SSF46767 210 290 7.06E-30 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 APT56_12360 d102c4520c11e24d66163914bc577900 294 SUPERFAMILY SSF46689 28 74 8.96E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_12360 d102c4520c11e24d66163914bc577900 294 Gene3D G3DSA:1.10.10.10 210 294 9.3E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12360 d102c4520c11e24d66163914bc577900 294 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 211 290 3.0E-33 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT56_12360 d102c4520c11e24d66163914bc577900 294 SMART SM00342 41 123 3.2E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_12360 d102c4520c11e24d66163914bc577900 294 Pfam PF12833 Helix-turn-helix domain 47 124 1.6E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_12360 d102c4520c11e24d66163914bc577900 294 Gene3D G3DSA:3.30.160.70 117 209 2.7E-31 T 11-10-2018 APT56_12360 d102c4520c11e24d66163914bc577900 294 SUPERFAMILY SSF46689 77 125 3.05E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_12360 d102c4520c11e24d66163914bc577900 294 Gene3D G3DSA:1.10.10.60 22 88 1.0E-24 T 11-10-2018 APT56_12360 d102c4520c11e24d66163914bc577900 294 SUPERFAMILY SSF53155 130 209 1.06E-20 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APT56_12360 d102c4520c11e24d66163914bc577900 294 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 212 290 1.5E-31 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT56_02455 4d56049bd69d88884a17eac430a7a918 297 Gene3D G3DSA:3.40.50.1820 2 279 1.3E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02455 4d56049bd69d88884a17eac430a7a918 297 SUPERFAMILY SSF53474 3 276 2.66E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02455 4d56049bd69d88884a17eac430a7a918 297 Pfam PF12146 Serine aminopeptidase, S33 33 259 5.2E-59 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 APT56_17370 a4cdbbf5172ce32f30b066e9cad8fa9c 263 SUPERFAMILY SSF51366 1 252 1.13E-79 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_17370 a4cdbbf5172ce32f30b066e9cad8fa9c 263 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 11 242 1.3E-61 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_17370 a4cdbbf5172ce32f30b066e9cad8fa9c 263 Gene3D G3DSA:3.20.20.70 1 263 1.1E-88 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_17370 a4cdbbf5172ce32f30b066e9cad8fa9c 263 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 11-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_17370 a4cdbbf5172ce32f30b066e9cad8fa9c 263 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 262 31.977 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_17370 a4cdbbf5172ce32f30b066e9cad8fa9c 263 Pfam PF00290 Tryptophan synthase alpha chain 9 242 2.8E-77 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 Gene3D G3DSA:3.40.50.10490 6 217 2.3E-86 T 11-10-2018 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 4 15 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 224 1.6E-97 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 Gene3D G3DSA:1.10.287.610 101 148 2.3E-86 T 11-10-2018 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 SUPERFAMILY SSF52313 4 228 1.09E-90 T 11-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 PRINTS PR00395 Ribosomal protein S2 signature 156 173 1.6E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 PRINTS PR00395 Ribosomal protein S2 signature 35 44 1.6E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 PRINTS PR00395 Ribosomal protein S2 signature 173 184 1.6E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 PRINTS PR00395 Ribosomal protein S2 signature 85 102 1.6E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 PRINTS PR00395 Ribosomal protein S2 signature 194 208 1.6E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 PRINTS PR00395 Ribosomal protein S2 signature 4 22 1.6E-35 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 Pfam PF00318 Ribosomal protein S2 7 222 9.1E-91 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_12240 d0092086d64bc6dfb8a4d95ca629280e 249 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 223 38.652 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 Gene3D G3DSA:1.20.1180.10 194 263 1.3E-22 T 11-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 2 263 45.055 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 177 262 5.6E-27 T 11-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 5 261 2.1E-98 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 SUPERFAMILY SSF51161 5 248 7.41E-77 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 Gene3D G3DSA:2.160.10.10 2 193 5.2E-51 T 11-10-2018 APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 PIRSF PIRSF000456 1 264 1.0E-97 T 11-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 42 1.9E-6 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_12300 9510c85b01bb8cc5fb3e1f7bec4551a5 264 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 106 136 6.7E-8 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_25260 ef1d70002e1d326891568eaf300eadbd 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 122 195 9.2E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_25260 ef1d70002e1d326891568eaf300eadbd 206 Gene3D G3DSA:3.40.30.10 1 83 2.2E-31 T 11-10-2018 APT56_25260 ef1d70002e1d326891568eaf300eadbd 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 78 8.1E-13 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_25260 ef1d70002e1d326891568eaf300eadbd 206 SUPERFAMILY SSF52833 1 85 2.11E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_25260 ef1d70002e1d326891568eaf300eadbd 206 SUPERFAMILY SSF47616 72 202 5.71E-29 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_25260 ef1d70002e1d326891568eaf300eadbd 206 Gene3D G3DSA:1.20.1050.10 84 199 2.8E-40 T 11-10-2018 APT56_27710 f1496ab717510d180f3fd5d23a4db093 121 SUPERFAMILY SSF53137 3 119 2.03E-49 T 11-10-2018 APT56_27710 f1496ab717510d180f3fd5d23a4db093 121 Gene3D G3DSA:3.30.420.100 1 121 1.7E-41 T 11-10-2018 APT56_27710 f1496ab717510d180f3fd5d23a4db093 121 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 121 26.054 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27710 f1496ab717510d180f3fd5d23a4db093 121 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 121 3.3E-35 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27710 f1496ab717510d180f3fd5d23a4db093 121 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 121 2.6E-36 T 11-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_03755 d82490883c1377da55d4ba93f0224f17 443 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 27 92 4.3E-9 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_03755 d82490883c1377da55d4ba93f0224f17 443 SUPERFAMILY SSF52540 96 366 2.09E-95 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03755 d82490883c1377da55d4ba93f0224f17 443 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 351 360 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_03755 d82490883c1377da55d4ba93f0224f17 443 SMART SM00382 163 344 4.5E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_03755 d82490883c1377da55d4ba93f0224f17 443 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 9 440 7.9E-179 T 11-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_03755 d82490883c1377da55d4ba93f0224f17 443 Gene3D G3DSA:3.40.50.12240 17 443 4.1E-152 T 11-10-2018 APT56_03755 d82490883c1377da55d4ba93f0224f17 443 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 151 360 2.0E-75 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_03755 d82490883c1377da55d4ba93f0224f17 443 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 21 440 2.1E-199 T 11-10-2018 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_15570 25c6abcecc0daf86a2dcaf628fc6c1be 306 Gene3D G3DSA:2.40.30.170 174 295 3.5E-27 T 11-10-2018 APT56_15570 25c6abcecc0daf86a2dcaf628fc6c1be 306 Pfam PF13533 Biotin-lipoyl like 51 98 2.7E-18 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_15570 25c6abcecc0daf86a2dcaf628fc6c1be 306 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 50 234 1.8E-31 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_15570 25c6abcecc0daf86a2dcaf628fc6c1be 306 SUPERFAMILY SSF111369 44 226 2.35E-22 T 11-10-2018 APT56_15570 25c6abcecc0daf86a2dcaf628fc6c1be 306 Pfam PF13437 HlyD family secretion protein 160 241 1.2E-9 T 11-10-2018 APT56_15570 25c6abcecc0daf86a2dcaf628fc6c1be 306 Gene3D G3DSA:2.40.50.100 51 122 8.2E-13 T 11-10-2018 APT56_21795 8588944e6a585b41583fe9b2bd3f6df9 245 Gene3D G3DSA:1.10.10.1320 11 103 1.8E-8 T 11-10-2018 APT56_21795 8588944e6a585b41583fe9b2bd3f6df9 245 Pfam PF10099 Anti-sigma-K factor rskA 67 238 2.7E-23 T 11-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 APT56_01945 35d4e0eae1462ca49a32d7e3311dd8e0 311 Hamap MF_00611 Protein FdhE [fdhE]. 2 307 34.795 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 APT56_01945 35d4e0eae1462ca49a32d7e3311dd8e0 311 PIRSF PIRSF018296 1 310 2.4E-98 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 APT56_01945 35d4e0eae1462ca49a32d7e3311dd8e0 311 Pfam PF04216 Protein involved in formate dehydrogenase formation 17 305 4.7E-109 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 APT56_01945 35d4e0eae1462ca49a32d7e3311dd8e0 311 Gene3D G3DSA:3.90.1670.10 19 309 2.4E-98 T 11-10-2018 IPR024064 FdhE-like superfamily APT56_01945 35d4e0eae1462ca49a32d7e3311dd8e0 311 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 3 304 1.1E-86 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 APT56_01945 35d4e0eae1462ca49a32d7e3311dd8e0 311 SUPERFAMILY SSF144020 22 307 6.28E-82 T 11-10-2018 IPR024064 FdhE-like superfamily APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 Pfam PF04898 Glutamate synthase central domain 494 773 1.3E-109 T 11-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 Gene3D G3DSA:3.60.20.10 41 475 1.4E-183 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 SUPERFAMILY SSF51395 486 1267 2.24E-262 T 11-10-2018 APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 SUPERFAMILY SSF56235 41 467 2.47E-154 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 Pfam PF01645 Conserved region in glutamate synthase 834 1233 6.5E-156 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 Gene3D G3DSA:2.160.20.60 1285 1576 7.5E-106 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 SUPERFAMILY SSF69336 1280 1568 1.57E-90 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 Gene3D G3DSA:3.20.20.70 818 1284 1.6E-206 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 Gene3D G3DSA:3.20.20.70 476 817 1.3E-121 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 Pfam PF00310 Glutamine amidotransferases class-II 41 464 2.9E-185 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain APT56_01355 06eeefb36b8cbda3e12b5a11f33f785d 1579 Pfam PF01493 GXGXG motif 1311 1496 9.1E-78 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 Gene3D G3DSA:2.40.160.10 10 370 6.8E-85 T 11-10-2018 IPR023614 Porin domain superfamily APT56_02370 e48f3c98267076385b97b6ce519246f2 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 99 109 2.1E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 194 206 2.1E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 158 169 2.1E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 327 344 2.1E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 55 66 2.1E-8 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 PRINTS PR00184 Neisseria sp. porin signature 157 174 2.7E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 PRINTS PR00184 Neisseria sp. porin signature 57 82 2.7E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 PRINTS PR00184 Neisseria sp. porin signature 324 348 2.7E-8 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 SUPERFAMILY SSF56935 22 370 3.36E-74 T 11-10-2018 APT56_02370 e48f3c98267076385b97b6ce519246f2 370 Pfam PF13609 Gram-negative porin 8 347 1.1E-57 T 11-10-2018 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 Pfam PF04055 Radical SAM superfamily 23 183 1.0E-23 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 24 35 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 Gene3D G3DSA:3.20.20.70 7 331 6.3E-75 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 SMART SM00729 18 220 7.3E-4 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 9 331 5.4E-101 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 9 331 36.172 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 Pfam PF06463 Molybdenum Cofactor Synthesis C 190 315 8.1E-28 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 Pfam PF13353 4Fe-4S single cluster domain 25 111 8.9E-5 T 11-10-2018 APT56_12925 918b4de923fcf4e4a8d1cc72f12c0d6b 331 SUPERFAMILY SSF102114 8 299 1.29E-64 T 11-10-2018 APT56_03480 fa40dbb094693c4597e4317402b8a139 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.809 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APT56_03480 fa40dbb094693c4597e4317402b8a139 142 PIRSF PIRSF002181 1 142 2.3E-48 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APT56_03480 fa40dbb094693c4597e4317402b8a139 142 Pfam PF00572 Ribosomal protein L13 15 138 1.6E-55 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APT56_03480 fa40dbb094693c4597e4317402b8a139 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 3.2E-62 T 11-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_03480 fa40dbb094693c4597e4317402b8a139 142 SUPERFAMILY SSF52161 1 139 2.35E-59 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_03480 fa40dbb094693c4597e4317402b8a139 142 Gene3D G3DSA:3.90.1180.10 1 142 3.3E-62 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_20145 c0a55b111aa2be78e0248504096dfa4b 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.8E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20145 c0a55b111aa2be78e0248504096dfa4b 302 Gene3D G3DSA:3.40.190.10 91 292 2.5E-69 T 11-10-2018 APT56_20145 c0a55b111aa2be78e0248504096dfa4b 302 Gene3D G3DSA:1.10.10.10 3 89 7.4E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20145 c0a55b111aa2be78e0248504096dfa4b 302 Pfam PF03466 LysR substrate binding domain 89 295 1.2E-45 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_20145 c0a55b111aa2be78e0248504096dfa4b 302 Gene3D G3DSA:3.40.190.10 163 266 2.5E-69 T 11-10-2018 APT56_20145 c0a55b111aa2be78e0248504096dfa4b 302 SUPERFAMILY SSF53850 90 297 1.07E-48 T 11-10-2018 APT56_20145 c0a55b111aa2be78e0248504096dfa4b 302 SUPERFAMILY SSF46785 7 112 1.69E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00340 82f7dc5b89b275c9d08cc7ace5396201 302 Gene3D G3DSA:3.40.190.10 26 272 2.2E-79 T 11-10-2018 APT56_00340 82f7dc5b89b275c9d08cc7ace5396201 302 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 267 2.4E-41 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_00340 82f7dc5b89b275c9d08cc7ace5396201 302 SUPERFAMILY SSF53850 1 270 5.34E-54 T 11-10-2018 APT56_00340 82f7dc5b89b275c9d08cc7ace5396201 302 Gene3D G3DSA:3.40.190.10 129 226 2.2E-79 T 11-10-2018 APT56_00340 82f7dc5b89b275c9d08cc7ace5396201 302 SMART SM00062 35 269 3.7E-42 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_09130 3f95a905442a09766a98d78842d6d349 381 SMART SM00267 207 379 3.1E-51 T 11-10-2018 IPR000160 GGDEF domain APT56_09130 3f95a905442a09766a98d78842d6d349 381 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 215 379 1.1E-36 T 11-10-2018 IPR000160 GGDEF domain APT56_09130 3f95a905442a09766a98d78842d6d349 381 Pfam PF00990 Diguanylate cyclase, GGDEF domain 218 374 1.2E-38 T 11-10-2018 IPR000160 GGDEF domain APT56_09130 3f95a905442a09766a98d78842d6d349 381 SUPERFAMILY SSF55073 223 377 2.82E-43 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_09130 3f95a905442a09766a98d78842d6d349 381 Gene3D G3DSA:3.30.70.270 213 380 8.5E-50 T 11-10-2018 APT56_11190 05753b65bcc1e10a944b5a8e3431daf7 148 PRINTS PR00502 NUDIX hydrolase family signature 50 65 8.7E-8 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT56_11190 05753b65bcc1e10a944b5a8e3431daf7 148 PRINTS PR00502 NUDIX hydrolase family signature 36 50 8.7E-8 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT56_11190 05753b65bcc1e10a944b5a8e3431daf7 148 Gene3D G3DSA:3.90.79.10 3 140 6.7E-34 T 11-10-2018 APT56_11190 05753b65bcc1e10a944b5a8e3431daf7 148 Pfam PF00293 NUDIX domain 12 122 9.7E-21 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_11190 05753b65bcc1e10a944b5a8e3431daf7 148 SUPERFAMILY SSF55811 5 133 1.35E-34 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 Gene3D G3DSA:3.40.640.10 151 456 1.4E-95 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 Gene3D G3DSA:3.90.1150.10 459 630 3.0E-69 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 611 735 9.1E-46 T 11-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 Gene3D G3DSA:3.90.100.10 631 751 3.6E-38 T 11-10-2018 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 SUPERFAMILY SSF55904 606 749 2.62E-44 T 11-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 20 145 3.5E-38 T 11-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 PIRSF PIRSF009393 1 753 1.6E-276 T 11-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 SUPERFAMILY SSF53383 151 604 4.03E-116 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 Gene3D G3DSA:3.40.50.2300 5 149 2.3E-19 T 11-10-2018 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 151 584 1.1E-152 T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 APT56_24795 163fff589b0895db66ecef17ee0c14dd 753 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 392 406 - T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 Gene3D G3DSA:2.170.130.10 134 263 4.0E-38 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 SUPERFAMILY SSF56935 114 809 2.5E-122 T 11-10-2018 APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 158 809 4.5E-104 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 Pfam PF00593 TonB dependent receptor 359 808 1.1E-42 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 Gene3D G3DSA:2.40.170.20 264 809 1.0E-154 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 Gene3D G3DSA:3.55.50.30 39 110 3.3E-24 T 11-10-2018 APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 Pfam PF07715 TonB-dependent Receptor Plug Domain 156 255 1.3E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 Pfam PF07660 Secretin and TonB N terminus short domain 63 111 7.8E-7 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_06100 c2475e09dc710868a2c4739c02c2bce6 809 SMART SM00965 61 112 5.5E-12 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_11075 6d35fdad4357ca3a4cf0f8124842f3f0 1064 SUPERFAMILY SSF53706 96 933 7.61E-104 T 11-10-2018 APT56_11075 6d35fdad4357ca3a4cf0f8124842f3f0 1064 Pfam PF01568 Molydopterin dinucleotide binding domain 934 1028 1.4E-11 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APT56_11075 6d35fdad4357ca3a4cf0f8124842f3f0 1064 SUPERFAMILY SSF50692 914 1063 7.01E-25 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APT56_11075 6d35fdad4357ca3a4cf0f8124842f3f0 1064 SMART SM00926 96 178 1.2E-11 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_11075 6d35fdad4357ca3a4cf0f8124842f3f0 1064 Gene3D G3DSA:2.40.40.20 891 1042 8.5E-22 T 11-10-2018 APT56_11075 6d35fdad4357ca3a4cf0f8124842f3f0 1064 Gene3D G3DSA:3.40.50.740 95 758 1.3E-67 T 11-10-2018 APT56_11075 6d35fdad4357ca3a4cf0f8124842f3f0 1064 Pfam PF00384 Molybdopterin oxidoreductase 271 724 4.0E-8 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_25085 c22a1bc8609e6d9f358016fa471d6fa1 285 Pfam PF07859 alpha/beta hydrolase fold 54 239 1.7E-14 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 APT56_25085 c22a1bc8609e6d9f358016fa471d6fa1 285 SUPERFAMILY SSF53474 13 269 1.83E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_25085 c22a1bc8609e6d9f358016fa471d6fa1 285 Gene3D G3DSA:3.40.50.1820 19 271 1.2E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_19065 46a9f4cafbdeb54a9adaa015c26662bc 232 SUPERFAMILY SSF47616 94 218 5.67E-12 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_19065 46a9f4cafbdeb54a9adaa015c26662bc 232 Gene3D G3DSA:1.20.1050.10 92 225 9.0E-24 T 11-10-2018 APT56_19065 46a9f4cafbdeb54a9adaa015c26662bc 232 Pfam PF13410 Glutathione S-transferase, C-terminal domain 149 215 1.1E-6 T 11-10-2018 APT56_19065 46a9f4cafbdeb54a9adaa015c26662bc 232 Pfam PF13417 Glutathione S-transferase, N-terminal domain 17 86 9.6E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_19065 46a9f4cafbdeb54a9adaa015c26662bc 232 Gene3D G3DSA:3.40.30.10 8 86 9.4E-16 T 11-10-2018 APT56_19065 46a9f4cafbdeb54a9adaa015c26662bc 232 SUPERFAMILY SSF52833 16 110 5.08E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_25280 3db7e084b152f55cf1bae9562ab9ac8e 319 PIRSF PIRSF017082 1 319 6.7E-101 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_25280 3db7e084b152f55cf1bae9562ab9ac8e 319 SUPERFAMILY SSF53850 81 284 9.23E-5 T 11-10-2018 APT56_25280 3db7e084b152f55cf1bae9562ab9ac8e 319 Gene3D G3DSA:3.40.190.150 28 310 2.5E-90 T 11-10-2018 APT56_25280 3db7e084b152f55cf1bae9562ab9ac8e 319 Gene3D G3DSA:3.40.190.10 124 245 2.5E-90 T 11-10-2018 APT56_25280 3db7e084b152f55cf1bae9562ab9ac8e 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 306 2.7E-53 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_14440 394ab646de1ff6b8e3e067f0331dfa2b 294 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 10 224 2.0E-50 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 APT56_14440 394ab646de1ff6b8e3e067f0331dfa2b 294 SUPERFAMILY SSF51621 6 234 1.63E-68 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_14440 394ab646de1ff6b8e3e067f0331dfa2b 294 PIRSF PIRSF015582 3 293 1.7E-80 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like APT56_14440 394ab646de1ff6b8e3e067f0331dfa2b 294 Gene3D G3DSA:3.20.20.60 2 293 4.8E-92 T 11-10-2018 APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 SUPERFAMILY SSF46785 1 60 5.1E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.8E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.8E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.8E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 SMART SM00344 1 109 1.2E-44 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 1.5E-18 T 11-10-2018 APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 SUPERFAMILY SSF54909 64 149 3.75E-20 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 Pfam PF01037 Lrp/AsnC ligand binding domain 67 140 2.3E-23 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 Gene3D G3DSA:1.10.10.10 2 51 7.9E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_03375 6175b8191e6c7d25e8eba63b25b24aad 149 Gene3D G3DSA:3.30.70.920 52 146 3.9E-22 T 11-10-2018 APT56_22755 3c735afa1673e19acff699ec690d17d9 237 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 190 233 5.3E-12 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APT56_22755 3c735afa1673e19acff699ec690d17d9 237 Pfam PF01411 tRNA synthetases class II (A) 14 96 8.8E-9 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 APT56_22755 3c735afa1673e19acff699ec690d17d9 237 SUPERFAMILY SSF55186 97 234 5.36E-31 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 APT56_22755 3c735afa1673e19acff699ec690d17d9 237 Gene3D G3DSA:2.40.30.130 1 93 4.6E-16 T 11-10-2018 APT56_22755 3c735afa1673e19acff699ec690d17d9 237 Gene3D G3DSA:3.30.980.10 94 237 1.6E-31 T 11-10-2018 APT56_22755 3c735afa1673e19acff699ec690d17d9 237 SMART SM00863 190 233 7.5E-15 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APT56_22755 3c735afa1673e19acff699ec690d17d9 237 SUPERFAMILY SSF50447 4 93 8.12E-13 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_06485 5a1b4cb79ab63ed7185fe3944a4b70ed 164 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 9 162 1.0E-63 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT56_06485 5a1b4cb79ab63ed7185fe3944a4b70ed 164 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 8 163 35.535 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT56_06485 5a1b4cb79ab63ed7185fe3944a4b70ed 164 SUPERFAMILY SSF69765 7 163 3.53E-64 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT56_06485 5a1b4cb79ab63ed7185fe3944a4b70ed 164 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 42 57 - T 11-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT56_06485 5a1b4cb79ab63ed7185fe3944a4b70ed 164 Pfam PF02542 YgbB family 8 161 4.9E-64 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT56_06485 5a1b4cb79ab63ed7185fe3944a4b70ed 164 Gene3D G3DSA:3.30.1330.50 6 164 2.4E-67 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APT56_25925 87755964253046cd01d7002f3b2826f7 237 PIRSF PIRSF006293 4 236 8.7E-66 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APT56_25925 87755964253046cd01d7002f3b2826f7 237 SUPERFAMILY SSF52402 7 231 4.41E-53 T 11-10-2018 APT56_25925 87755964253046cd01d7002f3b2826f7 237 Pfam PF06508 Queuosine biosynthesis protein QueC 7 231 3.2E-69 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APT56_25925 87755964253046cd01d7002f3b2826f7 237 Gene3D G3DSA:3.40.50.620 4 236 2.4E-63 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_25925 87755964253046cd01d7002f3b2826f7 237 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 8 224 3.2E-57 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APT56_25925 87755964253046cd01d7002f3b2826f7 237 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 6 237 50.714 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APT56_17860 471765c83b0f1c2c7ee0a6636eab770c 518 SUPERFAMILY SSF56176 58 268 4.67E-50 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_17860 471765c83b0f1c2c7ee0a6636eab770c 518 SUPERFAMILY SSF55103 243 509 3.27E-34 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_17860 471765c83b0f1c2c7ee0a6636eab770c 518 Gene3D G3DSA:3.40.462.40 311 461 6.2E-17 T 11-10-2018 APT56_17860 471765c83b0f1c2c7ee0a6636eab770c 518 Gene3D G3DSA:1.10.45.10 467 505 3.6E-6 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT56_17860 471765c83b0f1c2c7ee0a6636eab770c 518 Pfam PF02913 FAD linked oxidases, C-terminal domain 268 505 9.1E-28 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_17860 471765c83b0f1c2c7ee0a6636eab770c 518 Gene3D G3DSA:3.30.465.40 70 281 1.2E-55 T 11-10-2018 APT56_17860 471765c83b0f1c2c7ee0a6636eab770c 518 Pfam PF01565 FAD binding domain 93 231 4.9E-33 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_01250 1bc50e28b0625799c2f5b02cfe9167f7 265 SUPERFAMILY SSF52540 6 240 2.3E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01250 1bc50e28b0625799c2f5b02cfe9167f7 265 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_01250 1bc50e28b0625799c2f5b02cfe9167f7 265 SMART SM00382 44 224 7.7E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01250 1bc50e28b0625799c2f5b02cfe9167f7 265 Gene3D G3DSA:3.40.50.300 1 257 2.0E-63 T 11-10-2018 APT56_01250 1bc50e28b0625799c2f5b02cfe9167f7 265 Pfam PF00005 ABC transporter 35 177 1.1E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_06645 2767222ff2a78e003a6553386af0c557 211 SMART SM00525 186 206 1.3E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 Gene3D G3DSA:1.10.1670.10 11 203 5.2E-78 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 2.5E-21 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 Pfam PF00633 Helix-hairpin-helix motif 100 127 2.3E-9 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.887 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 APT56_06645 2767222ff2a78e003a6553386af0c557 211 TIGRFAM TIGR01083 nth: endonuclease III 5 194 9.0E-86 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 APT56_06645 2767222ff2a78e003a6553386af0c557 211 SMART SM00478 38 185 6.0E-60 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 9.1E-5 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 PIRSF PIRSF001435 1 210 1.4E-52 T 11-10-2018 APT56_06645 2767222ff2a78e003a6553386af0c557 211 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 SUPERFAMILY SSF48150 3 208 2.04E-74 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT56_06645 2767222ff2a78e003a6553386af0c557 211 Gene3D G3DSA:1.10.340.30 21 132 5.2E-78 T 11-10-2018 APT56_00925 08b14d54a1c3f9581a156e85d714c855 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 288 1.9E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00925 08b14d54a1c3f9581a156e85d714c855 291 Gene3D G3DSA:1.10.3720.10 48 289 7.8E-69 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00925 08b14d54a1c3f9581a156e85d714c855 291 SUPERFAMILY SSF161098 52 277 8.24E-60 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 SUPERFAMILY SSF53706 4 1067 0.0 T 11-10-2018 APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1233 0.0 T 11-10-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 Pfam PF01568 Molydopterin dinucleotide binding domain 1086 1200 8.4E-20 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 40 3.1E-16 T 11-10-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 Pfam PF00384 Molybdopterin oxidoreductase 108 829 4.3E-157 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 SMART SM00926 43 105 1.0E-8 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 SUPERFAMILY SSF50692 1076 1235 2.94E-44 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APT56_12900 90b9545e7800cf40653ac1978412e5d4 1251 Gene3D G3DSA:3.40.50.12440 44 1244 0.0 T 11-10-2018 APT56_01320 d79b500c080118d05b275e40e951693b 460 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 123 330 7.1E-75 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_01320 d79b500c080118d05b275e40e951693b 460 SUPERFAMILY SSF52440 7 121 6.33E-46 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_01320 d79b500c080118d05b275e40e951693b 460 Gene3D G3DSA:3.30.470.130 2 456 1.1E-193 T 11-10-2018 APT56_01320 d79b500c080118d05b275e40e951693b 460 Pfam PF02785 Biotin carboxylase C-terminal domain 344 450 6.1E-39 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_01320 d79b500c080118d05b275e40e951693b 460 SMART SM00878 344 450 1.7E-61 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_01320 d79b500c080118d05b275e40e951693b 460 SUPERFAMILY SSF56059 91 358 2.3E-69 T 11-10-2018 APT56_01320 d79b500c080118d05b275e40e951693b 460 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 11 454 6.1E-191 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 APT56_01320 d79b500c080118d05b275e40e951693b 460 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 294 301 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_01320 d79b500c080118d05b275e40e951693b 460 Pfam PF00289 Biotin carboxylase, N-terminal domain 10 118 3.6E-43 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_01320 d79b500c080118d05b275e40e951693b 460 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 161 175 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_01320 d79b500c080118d05b275e40e951693b 460 SUPERFAMILY SSF51246 339 454 1.52E-41 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 8.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 8.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 8.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 190 3.3E-4 T 11-10-2018 APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 Gene3D G3DSA:3.40.50.720 4 283 1.4E-70 T 11-10-2018 APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 8.7E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 8.7E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 8.7E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 8.7E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.7E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 Pfam PF00106 short chain dehydrogenase 11 194 1.4E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_16645 0b9524c78fa4616a8a768e7823a747b2 283 SUPERFAMILY SSF51735 6 241 7.14E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_01210 6cbc3add65e5738d0d1a15d72e0fade8 232 SUPERFAMILY SSF52317 3 230 1.29E-52 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_01210 6cbc3add65e5738d0d1a15d72e0fade8 232 Pfam PF00117 Glutamine amidotransferase class-I 6 227 2.5E-17 T 11-10-2018 IPR017926 Glutamine amidotransferase APT56_01210 6cbc3add65e5738d0d1a15d72e0fade8 232 Gene3D G3DSA:3.40.50.880 1 231 1.6E-72 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_01210 6cbc3add65e5738d0d1a15d72e0fade8 232 PIRSF PIRSF000495 130 232 2.8E-29 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APT56_01210 6cbc3add65e5738d0d1a15d72e0fade8 232 PIRSF PIRSF000495 2 119 5.6E-33 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APT56_01210 6cbc3add65e5738d0d1a15d72e0fade8 232 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 141 229 2.8E-31 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APT56_01210 6cbc3add65e5738d0d1a15d72e0fade8 232 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 230 34.038 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APT56_20000 bd87fdb0d3f2d71381c0571dfd77d116 223 SUPERFAMILY SSF46689 4 77 4.67E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_20000 bd87fdb0d3f2d71381c0571dfd77d116 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 6.9E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_20000 bd87fdb0d3f2d71381c0571dfd77d116 223 SUPERFAMILY SSF48498 84 219 1.11E-33 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_20000 bd87fdb0d3f2d71381c0571dfd77d116 223 Gene3D G3DSA:1.10.357.10 10 219 2.0E-67 T 11-10-2018 APT56_20000 bd87fdb0d3f2d71381c0571dfd77d116 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 3.2E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_20000 bd87fdb0d3f2d71381c0571dfd77d116 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 3.2E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 Pfam PF00732 GMC oxidoreductase 234 347 6.5E-13 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 SUPERFAMILY SSF51905 8 581 5.59E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 Gene3D G3DSA:3.50.50.60 3 170 2.3E-12 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 Gene3D G3DSA:3.50.50.60 249 365 4.2E-9 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 SUPERFAMILY SSF54373 414 492 1.1E-6 T 11-10-2018 APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 Gene3D G3DSA:3.50.50.60 477 580 2.8E-10 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 Pfam PF01494 FAD binding domain 8 53 3.4E-5 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 2.3E-5 T 11-10-2018 APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 2.3E-5 T 11-10-2018 APT56_14245 d266680211e04ca3cc5a5c23c0046e1e 588 Pfam PF05199 GMC oxidoreductase 448 570 2.2E-21 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT56_00625 66f35872afeda4252671c083d96d6c57 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 274 2.5E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00625 66f35872afeda4252671c083d96d6c57 284 Gene3D G3DSA:1.10.3720.10 81 277 4.5E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00625 66f35872afeda4252671c083d96d6c57 284 SUPERFAMILY SSF161098 84 263 2.49E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01325 c28a9d442936820df106e8c8822c20d3 291 SUPERFAMILY SSF160467 4 95 1.7E-14 T 11-10-2018 APT56_01325 c28a9d442936820df106e8c8822c20d3 291 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 4 223 7.1E-51 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D APT56_01325 c28a9d442936820df106e8c8822c20d3 291 SUPERFAMILY SSF50891 92 247 1.44E-28 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_01325 c28a9d442936820df106e8c8822c20d3 291 Gene3D G3DSA:2.40.100.10 84 288 6.7E-56 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_01325 c28a9d442936820df106e8c8822c20d3 291 Gene3D G3DSA:3.30.1360.40 1 83 5.2E-15 T 11-10-2018 APT56_01325 c28a9d442936820df106e8c8822c20d3 291 SMART SM00796 3 231 3.3E-67 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 Gene3D G3DSA:1.20.200.10 138 406 1.2E-115 T 11-10-2018 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 459 1.2E-235 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 92.247 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 Gene3D G3DSA:1.10.275.10 4 137 1.1E-55 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 Pfam PF00206 Lyase 11 341 5.2E-111 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 2.5E-33 T 11-10-2018 IPR000362 Fumarate lyase family APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 2.5E-33 T 11-10-2018 IPR000362 Fumarate lyase family APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 2.5E-33 T 11-10-2018 IPR000362 Fumarate lyase family APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 2.5E-33 T 11-10-2018 IPR000362 Fumarate lyase family APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 SUPERFAMILY SSF48557 4 457 2.04E-153 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 PRINTS PR00145 Argininosuccinate lyase family signature 132 154 3.4E-6 T 11-10-2018 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 PRINTS PR00145 Argininosuccinate lyase family signature 316 332 3.4E-6 T 11-10-2018 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 PRINTS PR00145 Argininosuccinate lyase family signature 174 194 3.4E-6 T 11-10-2018 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 Pfam PF10415 Fumarase C C-terminus 407 460 9.7E-25 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_04875 908489d84f87b93923fb0148bd7b2a03 463 Gene3D G3DSA:1.10.40.30 407 463 3.1E-28 T 11-10-2018 APT56_00590 0c171f65acead590e6be882d18a6fbff 402 Gene3D G3DSA:1.20.1250.20 22 399 2.6E-33 T 11-10-2018 APT56_00590 0c171f65acead590e6be882d18a6fbff 402 SUPERFAMILY SSF103473 24 397 1.14E-40 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_00590 0c171f65acead590e6be882d18a6fbff 402 Hamap MF_02091 Uncharacterized MFS-type transporter YfcJ [yfcJ]. 24 399 35.003 T 11-10-2018 IPR037541 Uncharacterized MFS-type transporter YfcJ APT56_00590 0c171f65acead590e6be882d18a6fbff 402 Pfam PF07690 Major Facilitator Superfamily 230 395 5.8E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_00590 0c171f65acead590e6be882d18a6fbff 402 Pfam PF07690 Major Facilitator Superfamily 27 204 4.0E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_21330 06ff8f330d8003057ad7d7a7b7e589d3 256 SUPERFAMILY SSF53335 13 234 1.07E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_21330 06ff8f330d8003057ad7d7a7b7e589d3 256 Gene3D G3DSA:3.40.50.150 14 251 2.1E-32 T 11-10-2018 APT56_09485 aa41bbb5d6249627338d65cf6e242018 243 SMART SM00382 26 213 1.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09485 aa41bbb5d6249627338d65cf6e242018 243 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_09485 aa41bbb5d6249627338d65cf6e242018 243 SUPERFAMILY SSF52540 1 235 1.39E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09485 aa41bbb5d6249627338d65cf6e242018 243 Gene3D G3DSA:3.40.50.300 1 243 3.9E-76 T 11-10-2018 APT56_09485 aa41bbb5d6249627338d65cf6e242018 243 PIRSF PIRSF039085 1 241 4.7E-114 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_09485 aa41bbb5d6249627338d65cf6e242018 243 Pfam PF00005 ABC transporter 17 165 1.6E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 PIRSF PIRSF000876 1 338 4.4E-97 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 1 338 31.085 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 Pfam PF01339 CheB methylesterase 158 333 4.3E-56 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 Gene3D G3DSA:3.40.50.2300 1 127 2.8E-21 T 11-10-2018 APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 Pfam PF00072 Response regulator receiver domain 4 99 4.4E-14 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 SUPERFAMILY SSF52738 155 336 7.98E-60 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 Gene3D G3DSA:3.40.50.180 146 338 3.3E-63 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 SUPERFAMILY SSF52172 2 105 3.7E-18 T 11-10-2018 IPR011006 CheY-like superfamily APT56_16460 8bc38cd565b4114b11008d121b0fad0c 338 SMART SM00448 1 116 3.1E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_13285 17b1cbdf5898e8e5d55d6e4f0e063273 314 Gene3D G3DSA:3.40.50.720 44 306 2.4E-50 T 11-10-2018 APT56_13285 17b1cbdf5898e8e5d55d6e4f0e063273 314 Gene3D G3DSA:3.30.360.10 115 289 2.4E-50 T 11-10-2018 APT56_13285 17b1cbdf5898e8e5d55d6e4f0e063273 314 SUPERFAMILY SSF51735 6 139 2.52E-28 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_13285 17b1cbdf5898e8e5d55d6e4f0e063273 314 SUPERFAMILY SSF55347 117 289 3.14E-37 T 11-10-2018 APT56_13285 17b1cbdf5898e8e5d55d6e4f0e063273 314 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 4 306 2.7E-119 T 11-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_13285 17b1cbdf5898e8e5d55d6e4f0e063273 314 SMART SM00859 5 106 9.0E-10 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT56_13285 17b1cbdf5898e8e5d55d6e4f0e063273 314 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 308 51.126 T 11-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_13285 17b1cbdf5898e8e5d55d6e4f0e063273 314 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 45 103 7.6E-10 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT56_13365 8dca629a637bb4e6346c3bebad9c135b 355 Gene3D G3DSA:3.40.50.1980 47 185 2.0E-34 T 11-10-2018 APT56_13365 8dca629a637bb4e6346c3bebad9c135b 355 Pfam PF01497 Periplasmic binding protein 69 308 4.9E-15 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APT56_13365 8dca629a637bb4e6346c3bebad9c135b 355 SUPERFAMILY SSF53807 65 341 3.49E-42 T 11-10-2018 APT56_13365 8dca629a637bb4e6346c3bebad9c135b 355 Gene3D G3DSA:3.40.50.1980 188 349 7.8E-40 T 11-10-2018 APT56_06665 be18676ced0984d083b4be7eb2fb746e 107 Gene3D G3DSA:3.30.70.20 2 101 2.8E-31 T 11-10-2018 APT56_06665 be18676ced0984d083b4be7eb2fb746e 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.7E-15 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 APT56_06665 be18676ced0984d083b4be7eb2fb746e 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.7E-15 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 APT56_06665 be18676ced0984d083b4be7eb2fb746e 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.7E-15 T 11-10-2018 IPR000813 7Fe ferredoxin GO:0009055 APT56_06665 be18676ced0984d083b4be7eb2fb746e 107 Pfam PF00037 4Fe-4S binding domain 34 56 1.7E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_06665 be18676ced0984d083b4be7eb2fb746e 107 Pfam PF11953 Domain of unknown function (DUF3470) 67 107 5.8E-17 T 11-10-2018 IPR022569 Ferredoxin, C-terminal APT56_06665 be18676ced0984d083b4be7eb2fb746e 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_06665 be18676ced0984d083b4be7eb2fb746e 107 SUPERFAMILY SSF54862 1 98 3.77E-23 T 11-10-2018 APT56_05030 d1e66d0b97725716bb9c47977a47cb1b 378 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 76 376 1.4E-108 T 11-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 APT56_05030 d1e66d0b97725716bb9c47977a47cb1b 378 Gene3D G3DSA:3.60.120.10 84 378 7.8E-115 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APT56_05030 d1e66d0b97725716bb9c47977a47cb1b 378 Pfam PF00425 chorismate binding enzyme 119 372 1.9E-87 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal APT56_05030 d1e66d0b97725716bb9c47977a47cb1b 378 SUPERFAMILY SSF56322 30 376 4.58E-105 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APT56_05030 d1e66d0b97725716bb9c47977a47cb1b 378 PRINTS PR00095 Anthranilate synthase component I signature 328 342 2.0E-14 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_05030 d1e66d0b97725716bb9c47977a47cb1b 378 PRINTS PR00095 Anthranilate synthase component I signature 313 327 2.0E-14 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_05030 d1e66d0b97725716bb9c47977a47cb1b 378 PRINTS PR00095 Anthranilate synthase component I signature 220 233 2.0E-14 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_05030 d1e66d0b97725716bb9c47977a47cb1b 378 PRINTS PR00095 Anthranilate synthase component I signature 234 247 2.0E-14 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_22525 4c3ed5cb5a628cf8ebe31ee7483c3ae2 215 Gene3D G3DSA:3.40.30.10 5 215 4.1E-49 T 11-10-2018 APT56_22525 4c3ed5cb5a628cf8ebe31ee7483c3ae2 215 SUPERFAMILY SSF52833 8 194 1.06E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 Pfam PF00082 Subtilase family 69 386 4.4E-30 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 333 343 - T 11-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 SUPERFAMILY SSF52743 43 396 1.31E-44 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 770 801 1.3E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 675 706 2.1E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 584 615 4.9E-11 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 SMART SM00869 1057 1322 1.3E-37 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 Gene3D G3DSA:2.40.128.130 990 1332 5.1E-65 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 SUPERFAMILY SSF51126 709 880 2.86E-10 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 PRINTS PR00723 Subtilisin serine protease family (S8) signature 140 153 2.0E-12 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 PRINTS PR00723 Subtilisin serine protease family (S8) signature 332 348 2.0E-12 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 PRINTS PR00723 Subtilisin serine protease family (S8) signature 69 88 2.0E-12 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 Pfam PF12951 Passenger-associated-transport-repeat 676 703 3.0E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 Pfam PF12951 Passenger-associated-transport-repeat 585 612 5.8E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 Pfam PF12951 Passenger-associated-transport-repeat 771 801 1.6E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 Pfam PF03797 Autotransporter beta-domain 1060 1312 1.8E-48 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 SUPERFAMILY SSF103515 999 1332 4.32E-55 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 SUPERFAMILY SSF51126 564 745 1.44E-10 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_06160 fbf8172c1b104d5f9d38ab8e8643258b 1332 Gene3D G3DSA:3.40.50.200 13 395 2.3E-50 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 268 353 4.0E-13 T 11-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 Gene3D G3DSA:3.30.1360.120 9 236 2.5E-83 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 Hamap MF_00259 Aminomethyltransferase [gcvT]. 4 359 43.131 T 11-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 Gene3D G3DSA:2.40.30.110 282 366 6.6E-28 T 11-10-2018 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 PIRSF PIRSF006487 1 366 4.9E-81 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 SUPERFAMILY SSF101790 282 361 2.78E-22 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal APT56_24775 b8ea6420747e978678335242d7e77f4b 366 SUPERFAMILY SSF103025 4 277 2.98E-93 T 11-10-2018 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 Gene3D G3DSA:3.30.70.1400 54 143 2.5E-83 T 11-10-2018 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 Gene3D G3DSA:4.10.1250.10 237 278 8.4E-19 T 11-10-2018 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 5 359 9.2E-121 T 11-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 APT56_24775 b8ea6420747e978678335242d7e77f4b 366 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 258 4.9E-89 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Gene3D G3DSA:3.30.70.870 438 488 2.8E-26 T 11-10-2018 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 9.8E-65 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Pfam PF03764 Elongation factor G, domain IV 484 604 2.8E-49 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Gene3D G3DSA:2.40.30.10 294 421 3.0E-52 T 11-10-2018 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 SMART SM00889 485 604 2.8E-76 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Hamap MF_00054_B Elongation factor G [fusA]. 6 698 112.716 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 SUPERFAMILY SSF54980 409 486 2.99E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 SUPERFAMILY SSF52540 6 288 2.47E-105 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 SUPERFAMILY SSF50447 271 409 3.31E-37 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 186 9.2E-31 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 SMART SM00838 606 694 2.5E-56 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Gene3D G3DSA:3.30.70.240 610 681 1.4E-90 T 11-10-2018 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Pfam PF00679 Elongation factor G C-terminus 606 693 1.1E-31 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 699 0.0 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Pfam PF03144 Elongation factor Tu domain 2 329 396 2.9E-19 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Gene3D G3DSA:3.30.230.10 489 694 1.4E-90 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 SUPERFAMILY SSF54211 484 605 2.53E-45 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 PRINTS PR00315 GTP-binding elongation factor signature 137 146 4.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 PRINTS PR00315 GTP-binding elongation factor signature 85 95 4.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 PRINTS PR00315 GTP-binding elongation factor signature 101 112 4.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Gene3D G3DSA:3.40.50.300 1 293 5.4E-113 T 11-10-2018 APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 SUPERFAMILY SSF54980 609 696 8.99E-30 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_27860 e07f60f842ac89c55ed5bcd9495b4804 700 Pfam PF14492 Elongation Factor G, domain II 409 483 2.2E-34 T 11-10-2018 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 Gene3D G3DSA:2.40.50.100 2 103 4.2E-22 T 11-10-2018 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 SUPERFAMILY SSF51230 4 94 9.68E-22 T 11-10-2018 IPR011053 Single hybrid motif APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 Pfam PF00364 Biotin-requiring enzyme 5 76 4.6E-14 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 Gene3D G3DSA:3.30.559.10 190 426 1.1E-93 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 SUPERFAMILY SSF52777 206 429 2.05E-79 T 11-10-2018 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 Gene3D G3DSA:4.10.320.10 139 189 2.3E-14 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 SUPERFAMILY SSF47005 147 189 4.19E-11 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 Pfam PF02817 e3 binding domain 152 186 1.6E-13 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 5 429 1.5E-140 T 11-10-2018 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-70268 APT56_25875 ae72f0d5ee58a1e33279eda17b1b7b84 429 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 205 428 5.0E-82 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Gene3D G3DSA:3.30.470.90 74 348 3.6E-93 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Pfam PF12826 Helix-hairpin-helix motif 541 604 1.7E-24 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Gene3D G3DSA:1.10.150.20 463 536 3.1E-26 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SUPERFAMILY SSF47781 434 613 1.04E-60 T 11-10-2018 IPR010994 RuvA domain 2-like APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SUPERFAMILY SSF52113 621 696 1.87E-18 T 11-10-2018 IPR036420 BRCT domain superfamily APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SMART SM00532 8 479 1.1E-264 T 11-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 439 465 2.2E-10 T 11-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SUPERFAMILY SSF56091 9 347 5.25E-114 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SUPERFAMILY SSF50249 348 431 8.39E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 352 429 7.5E-37 T 11-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Gene3D G3DSA:2.40.50.140 349 420 8.1E-35 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 PIRSF PIRSF001604 2 699 1.9E-241 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SMART SM00292 622 699 2.5E-11 T 11-10-2018 IPR001357 BRCT domain APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SMART SM00278 511 530 41.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SMART SM00278 477 496 6.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SMART SM00278 543 562 300.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 SMART SM00278 575 594 83.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 11 349 5.2E-118 T 11-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 362 377 - T 11-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Gene3D G3DSA:1.10.287.610 8 73 9.6E-30 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Gene3D G3DSA:2.20.70.80 422 462 4.1E-20 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Gene3D G3DSA:1.10.150.20 537 616 7.1E-30 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Pfam PF14520 Helix-hairpin-helix domain 477 531 2.0E-6 T 11-10-2018 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 624 696 1.7E-14 T 11-10-2018 IPR001357 BRCT domain APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 126 155 - T 11-10-2018 IPR018239 NAD-dependent DNA ligase, active site APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Gene3D G3DSA:3.40.50.10190 621 699 1.3E-25 T 11-10-2018 IPR036420 BRCT domain superfamily APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 Hamap MF_01588 DNA ligase [ligA]. 7 696 54.405 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APT56_06540 336e0c92a8f3e36e2f7660bece1aae84 699 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 16 691 1.9E-249 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APT56_03540 1fead7bd74b92b7baacc8c50a4fdf4ba 321 Pfam PF12833 Helix-turn-helix domain 240 317 2.1E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_03540 1fead7bd74b92b7baacc8c50a4fdf4ba 321 Gene3D G3DSA:1.10.10.60 217 320 2.5E-23 T 11-10-2018 APT56_03540 1fead7bd74b92b7baacc8c50a4fdf4ba 321 Gene3D G3DSA:3.40.50.880 2 205 6.4E-46 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_03540 1fead7bd74b92b7baacc8c50a4fdf4ba 321 SUPERFAMILY SSF52317 3 199 3.05E-32 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_03540 1fead7bd74b92b7baacc8c50a4fdf4ba 321 SMART SM00342 234 317 7.9E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_03540 1fead7bd74b92b7baacc8c50a4fdf4ba 321 Pfam PF01965 DJ-1/PfpI family 71 177 2.0E-9 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_03540 1fead7bd74b92b7baacc8c50a4fdf4ba 321 SUPERFAMILY SSF46689 218 268 1.65E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_03540 1fead7bd74b92b7baacc8c50a4fdf4ba 321 SUPERFAMILY SSF46689 270 317 6.72E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_09280 778d9d7c85803d99baaff4941f691f47 293 Pfam PF13557 Putative MetA-pathway of phenol degradation 62 289 1.3E-24 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative APT56_18925 60f16a57159007af250eb001075c026a 315 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 9 305 3.1E-84 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 APT56_18925 60f16a57159007af250eb001075c026a 315 SUPERFAMILY SSF54909 8 310 1.45E-103 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_18925 60f16a57159007af250eb001075c026a 315 Pfam PF04261 Dyp-type peroxidase family 9 305 1.5E-90 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 APT56_06320 31e1c9bda021b7f0e31fabe5ebd5a80c 463 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 8 454 7.7E-121 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_06320 31e1c9bda021b7f0e31fabe5ebd5a80c 463 Gene3D G3DSA:2.20.200.10 94 344 1.8E-131 T 11-10-2018 APT56_06320 31e1c9bda021b7f0e31fabe5ebd5a80c 463 Pfam PF02321 Outer membrane efflux protein 57 245 8.5E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_06320 31e1c9bda021b7f0e31fabe5ebd5a80c 463 Pfam PF02321 Outer membrane efflux protein 272 453 6.4E-28 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_06320 31e1c9bda021b7f0e31fabe5ebd5a80c 463 SUPERFAMILY SSF56954 2 457 2.22E-107 T 11-10-2018 APT56_06320 31e1c9bda021b7f0e31fabe5ebd5a80c 463 Gene3D G3DSA:1.20.1600.10 48 455 1.8E-131 T 11-10-2018 APT56_19265 d5ca536cffd4ad4697ddba6159e017ae 287 SUPERFAMILY SSF103481 188 287 4.05E-12 T 11-10-2018 APT56_19265 d5ca536cffd4ad4697ddba6159e017ae 287 Pfam PF00892 EamA-like transporter family 150 285 1.5E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_19265 d5ca536cffd4ad4697ddba6159e017ae 287 Pfam PF00892 EamA-like transporter family 6 137 4.9E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_19265 d5ca536cffd4ad4697ddba6159e017ae 287 SUPERFAMILY SSF103481 40 139 1.7E-11 T 11-10-2018 APT56_19265 d5ca536cffd4ad4697ddba6159e017ae 287 Gene3D G3DSA:1.10.3730.20 48 140 4.5E-7 T 11-10-2018 APT56_12815 b3689c00635415708e5d786754f95086 429 Pfam PF00368 Hydroxymethylglutaryl-coenzyme A reductase 16 386 1.3E-113 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 TIGRFAM TIGR00532 HMG_CoA_R_NAD: hydroxymethylglutaryl-CoA reductase, degradative 4 386 1.7E-125 T 11-10-2018 IPR004553 Hydroxymethylglutaryl-CoA reductase, bacterial-type GO:0015936|GO:0016616|GO:0050662 APT56_12815 b3689c00635415708e5d786754f95086 429 SUPERFAMILY SSF56542 7 427 5.89E-105 T 11-10-2018 IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily GO:0015936|GO:0016616|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 Gene3D G3DSA:1.10.8.660 376 427 6.9E-16 T 11-10-2018 APT56_12815 b3689c00635415708e5d786754f95086 429 Gene3D G3DSA:3.30.70.420 110 220 3.1E-137 T 11-10-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 ProSitePatterns PS00066 Hydroxymethylglutaryl-coenzyme A reductases signature 1. 176 190 - T 11-10-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 50 71 3.5E-8 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 77 97 3.5E-8 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 313 334 3.5E-8 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 PRINTS PR00071 Hydroxymethylglutaryl-coenzyme A reductase signature 174 192 3.5E-8 T 11-10-2018 IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II GO:0004420|GO:0015936|GO:0050662|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 Gene3D G3DSA:3.90.770.10 16 372 3.1E-137 T 11-10-2018 IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 ProSitePatterns PS01192 Hydroxymethylglutaryl-coenzyme A reductases signature 3. 371 384 - T 11-10-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 ProSitePatterns PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2. 325 332 - T 11-10-2018 IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site GO:0004420|GO:0055114 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_12815 b3689c00635415708e5d786754f95086 429 SUPERFAMILY SSF55035 111 219 2.62E-31 T 11-10-2018 IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily GO:0050662 KEGG: 00900+1.1.1.34|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-922|Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_20495 95713420083e4f6a41c52763053aaaa1 284 Pfam PF04228 Putative neutral zinc metallopeptidase 1 279 7.0E-119 T 11-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative APT56_23515 6b3e253b9b7ffa58a26baca709347e3c 227 Pfam PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA 76 221 7.0E-34 T 11-10-2018 IPR018655 Protein of unknown function DUF2086 APT56_06560 a9be286552580b474475c6eb078ef4be 132 SUPERFAMILY SSF51316 5 131 4.6E-60 T 11-10-2018 IPR011057 Mss4-like superfamily APT56_06560 a9be286552580b474475c6eb078ef4be 132 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 131 2.9E-56 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT56_06560 a9be286552580b474475c6eb078ef4be 132 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 38.067 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT56_06560 a9be286552580b474475c6eb078ef4be 132 Gene3D G3DSA:2.170.150.20 1 132 1.3E-61 T 11-10-2018 APT56_06560 a9be286552580b474475c6eb078ef4be 132 Pfam PF01641 SelR domain 10 129 5.2E-54 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APT56_13400 e729d7b1d23ba1a222425652ee734163 201 Pfam PF13523 Acetyltransferase (GNAT) domain 32 175 9.7E-46 T 11-10-2018 APT56_13400 e729d7b1d23ba1a222425652ee734163 201 SMART SM01006 29 76 1.3E-12 T 11-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain APT56_13400 e729d7b1d23ba1a222425652ee734163 201 SUPERFAMILY SSF55729 20 189 1.39E-44 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_13400 e729d7b1d23ba1a222425652ee734163 201 Gene3D G3DSA:3.40.630.30 11 199 7.8E-50 T 11-10-2018 APT56_20340 6243af4bd723b0c7dc173891165597b3 303 SUPERFAMILY SSF53850 87 290 7.51E-35 T 11-10-2018 APT56_20340 6243af4bd723b0c7dc173891165597b3 303 Gene3D G3DSA:3.40.190.10 163 262 3.9E-27 T 11-10-2018 APT56_20340 6243af4bd723b0c7dc173891165597b3 303 SUPERFAMILY SSF46785 1 109 7.35E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20340 6243af4bd723b0c7dc173891165597b3 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20340 6243af4bd723b0c7dc173891165597b3 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20340 6243af4bd723b0c7dc173891165597b3 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20340 6243af4bd723b0c7dc173891165597b3 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 3.6E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20340 6243af4bd723b0c7dc173891165597b3 303 Pfam PF03466 LysR substrate binding domain 88 282 1.1E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_20340 6243af4bd723b0c7dc173891165597b3 303 Gene3D G3DSA:3.40.190.10 90 268 3.9E-27 T 11-10-2018 APT56_20340 6243af4bd723b0c7dc173891165597b3 303 Gene3D G3DSA:1.10.10.10 1 81 1.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21320 4283e7ccab6a1e3042367966797f6e18 437 Pfam PF17408 Malonyl-CoA decarboxylase N-terminal domain 73 153 7.9E-13 T 11-10-2018 IPR035372 Malonyl-CoA decarboxylase, N-terminal KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 APT56_21320 4283e7ccab6a1e3042367966797f6e18 437 Gene3D G3DSA:1.20.140.90 42 154 2.2E-33 T 11-10-2018 IPR038351 Malonyl-CoA decarboxylase, N-terminal domain superfamily KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 APT56_21320 4283e7ccab6a1e3042367966797f6e18 437 Pfam PF05292 Malonyl-CoA decarboxylase C-terminal domain 156 411 1.3E-102 T 11-10-2018 IPR007956 Malonyl-CoA decarboxylase, C-terminal GO:0006633|GO:0050080 KEGG: 00410+4.1.1.9|KEGG: 00640+4.1.1.9|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 APT56_21320 4283e7ccab6a1e3042367966797f6e18 437 Gene3D G3DSA:3.40.630.150 155 437 1.0E-105 T 11-10-2018 APT56_18450 ecaffd0ec56cb3e9ed03df9a0d3bf048 322 Pfam PF03466 LysR substrate binding domain 95 302 9.1E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_18450 ecaffd0ec56cb3e9ed03df9a0d3bf048 322 Gene3D G3DSA:1.10.10.10 8 97 7.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18450 ecaffd0ec56cb3e9ed03df9a0d3bf048 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 5.3E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18450 ecaffd0ec56cb3e9ed03df9a0d3bf048 322 SUPERFAMILY SSF53850 97 305 1.78E-33 T 11-10-2018 APT56_18450 ecaffd0ec56cb3e9ed03df9a0d3bf048 322 Gene3D G3DSA:3.40.190.290 98 305 1.7E-32 T 11-10-2018 APT56_18450 ecaffd0ec56cb3e9ed03df9a0d3bf048 322 SUPERFAMILY SSF46785 7 87 1.82E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 SUPERFAMILY SSF103473 7 466 8.37E-60 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 Gene3D G3DSA:1.20.1720.10 22 253 1.2E-48 T 11-10-2018 APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 Pfam PF07690 Major Facilitator Superfamily 25 416 1.4E-49 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 Gene3D G3DSA:1.20.1250.20 266 469 8.2E-18 T 11-10-2018 APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 309 333 2.6E-14 T 11-10-2018 APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 2.6E-14 T 11-10-2018 APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 2.6E-14 T 11-10-2018 APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 407 426 2.6E-14 T 11-10-2018 APT56_16565 9f3371f7ef22625435cdeb8fe7d6b0e0 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 24 48 2.6E-14 T 11-10-2018 APT56_17360 1238681dfc539dfa2a7a42df1be8bea7 436 Gene3D G3DSA:3.30.70.360 216 342 7.7E-147 T 11-10-2018 APT56_17360 1238681dfc539dfa2a7a42df1be8bea7 436 Pfam PF07687 Peptidase dimerisation domain 213 323 1.1E-14 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_17360 1238681dfc539dfa2a7a42df1be8bea7 436 SUPERFAMILY SSF55031 216 328 1.4E-12 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_17360 1238681dfc539dfa2a7a42df1be8bea7 436 SUPERFAMILY SSF53187 17 430 3.71E-57 T 11-10-2018 APT56_17360 1238681dfc539dfa2a7a42df1be8bea7 436 Gene3D G3DSA:3.40.630.10 38 430 7.7E-147 T 11-10-2018 APT56_17360 1238681dfc539dfa2a7a42df1be8bea7 436 Pfam PF01546 Peptidase family M20/M25/M40 109 426 7.1E-30 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_17360 1238681dfc539dfa2a7a42df1be8bea7 436 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 32 416 6.2E-84 T 11-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase APT56_07520 f7f2052e557e88c2ac22c219d83d37f6 224 SUPERFAMILY SSF56784 4 215 6.37E-51 T 11-10-2018 IPR036412 HAD-like superfamily APT56_07520 f7f2052e557e88c2ac22c219d83d37f6 224 Gene3D G3DSA:1.10.150.240 17 84 5.1E-52 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APT56_07520 f7f2052e557e88c2ac22c219d83d37f6 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 1.0E-31 T 11-10-2018 APT56_07520 f7f2052e557e88c2ac22c219d83d37f6 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 69 183 2.7E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_07520 f7f2052e557e88c2ac22c219d83d37f6 224 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 5 203 9.2E-52 T 11-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 APT56_07520 f7f2052e557e88c2ac22c219d83d37f6 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 101 179 1.1E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_07520 f7f2052e557e88c2ac22c219d83d37f6 224 Gene3D G3DSA:3.40.50.1000 5 190 5.1E-52 T 11-10-2018 IPR023214 HAD superfamily APT56_15795 4b42feb7769f931dbb62d1f769d72dc9 135 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 64 110 1.4E-16 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_15795 4b42feb7769f931dbb62d1f769d72dc9 135 SUPERFAMILY SSF69118 16 132 1.03E-34 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_15795 4b42feb7769f931dbb62d1f769d72dc9 135 Gene3D G3DSA:1.20.1290.10 1 135 2.4E-57 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_15795 4b42feb7769f931dbb62d1f769d72dc9 135 Pfam PF02627 Carboxymuconolactone decarboxylase family 46 126 5.2E-22 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 Hamap MF_00600 60 kDa chaperonin [groL]. 2 544 41.506 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 1.1E-255 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 PRINTS PR00298 60kDa chaperonin signature 83 110 5.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 PRINTS PR00298 60kDa chaperonin signature 27 53 5.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 PRINTS PR00298 60kDa chaperonin signature 268 291 5.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 PRINTS PR00298 60kDa chaperonin signature 350 375 5.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 PRINTS PR00298 60kDa chaperonin signature 398 419 5.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 522 3.5E-98 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 Gene3D G3DSA:3.30.260.10 136 410 5.8E-238 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 Gene3D G3DSA:1.10.560.10 8 521 5.8E-238 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 Gene3D G3DSA:3.50.7.10 192 372 5.8E-238 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 SUPERFAMILY SSF54849 137 203 7.33E-25 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 SUPERFAMILY SSF48592 7 521 3.08E-76 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily APT56_24265 2632e357dd101d486eec1eee8a386a0c 546 SUPERFAMILY SSF52029 184 376 3.89E-83 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily APT56_08705 4dd8b807b383c5e7946b2dea10118cfa 458 SUPERFAMILY SSF56024 246 441 1.28E-44 T 11-10-2018 APT56_08705 4dd8b807b383c5e7946b2dea10118cfa 458 Pfam PF13091 PLD-like domain 85 195 3.5E-14 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_08705 4dd8b807b383c5e7946b2dea10118cfa 458 Pfam PF13091 PLD-like domain 299 425 2.4E-27 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_08705 4dd8b807b383c5e7946b2dea10118cfa 458 SUPERFAMILY SSF56024 57 288 1.41E-47 T 11-10-2018 APT56_08705 4dd8b807b383c5e7946b2dea10118cfa 458 Gene3D G3DSA:3.30.870.10 279 429 4.5E-31 T 11-10-2018 APT56_08705 4dd8b807b383c5e7946b2dea10118cfa 458 SMART SM00155 371 398 1.2E-4 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_08705 4dd8b807b383c5e7946b2dea10118cfa 458 SMART SM00155 170 197 0.016 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_08705 4dd8b807b383c5e7946b2dea10118cfa 458 Gene3D G3DSA:3.30.870.10 67 274 4.0E-43 T 11-10-2018 APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 Gene3D G3DSA:3.40.140.20 395 529 2.7E-57 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 Gene3D G3DSA:3.40.50.1380 1 202 1.3E-80 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 135 459 1.5E-115 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 SUPERFAMILY SSF53927 224 529 8.32E-127 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 SUPERFAMILY SSF52335 3 198 1.11E-64 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 Gene3D G3DSA:3.40.140.20 220 375 4.0E-59 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 Pfam PF02142 MGS-like domain 15 129 2.9E-28 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 SMART SM00798 135 461 1.3E-197 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5 529 3.8E-218 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 PIRSF PIRSF000414 1 529 3.5E-210 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 SMART SM00851 15 130 1.8E-56 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain APT56_05300 2fcd1200dbde3d4496d1eb5274d72144 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 529 43.492 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_15220 0c52e4bc4c0ed5d1b0c20c09f8cf7ca9 257 Gene3D G3DSA:1.10.3720.10 55 253 1.9E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15220 0c52e4bc4c0ed5d1b0c20c09f8cf7ca9 257 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 238 1.5E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_15220 0c52e4bc4c0ed5d1b0c20c09f8cf7ca9 257 SUPERFAMILY SSF161098 58 240 3.27E-29 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Gene3D G3DSA:2.40.160.50 438 781 5.9E-98 T 11-10-2018 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Gene3D G3DSA:3.10.20.310 283 356 9.9E-17 T 11-10-2018 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Gene3D G3DSA:3.10.20.310 188 279 9.3E-27 T 11-10-2018 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Pfam PF01103 Surface antigen 461 781 2.4E-67 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Gene3D G3DSA:3.10.20.310 105 186 1.1E-14 T 11-10-2018 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 PIRSF PIRSF006076 4 781 4.0E-250 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 37 781 1.8E-269 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Gene3D G3DSA:3.10.20.310 31 104 2.2E-21 T 11-10-2018 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Pfam PF07244 Surface antigen variable number repeat 279 356 5.0E-12 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Pfam PF07244 Surface antigen variable number repeat 360 434 9.3E-15 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Pfam PF07244 Surface antigen variable number repeat 105 185 4.2E-10 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Pfam PF07244 Surface antigen variable number repeat 189 276 5.8E-19 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Pfam PF07244 Surface antigen variable number repeat 38 103 2.3E-6 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Gene3D G3DSA:3.10.20.310 361 437 1.9E-27 T 11-10-2018 APT56_12280 90d3dc7d9b16e0c3c830c288bae33b4d 781 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 17 781 25.616 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 SUPERFAMILY SSF53335 80 257 3.78E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 Pfam PF03705 CheR methyltransferase, all-alpha domain 18 66 8.3E-12 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 Gene3D G3DSA:3.40.50.150 78 278 2.0E-52 T 11-10-2018 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 Pfam PF01739 CheR methyltransferase, SAM binding domain 80 257 6.7E-36 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 SMART SM00138 13 276 4.4E-28 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 SUPERFAMILY SSF47757 11 78 1.18E-6 T 11-10-2018 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 PRINTS PR00996 Glutamate methyltransferase family signature 140 156 6.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 PRINTS PR00996 Glutamate methyltransferase family signature 72 84 6.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 PRINTS PR00996 Glutamate methyltransferase family signature 214 228 6.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 PRINTS PR00996 Glutamate methyltransferase family signature 108 128 6.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 PRINTS PR00996 Glutamate methyltransferase family signature 35 48 6.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_24095 a9f5ad038ca9fd0161247f055d806ff4 281 PRINTS PR00996 Glutamate methyltransferase family signature 233 256 6.3E-24 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_26315 d0c7c3a8cfda4890bdd7625b83287b31 321 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site APT56_26315 d0c7c3a8cfda4890bdd7625b83287b31 321 SUPERFAMILY SSF48576 6 320 4.61E-97 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APT56_26315 d0c7c3a8cfda4890bdd7625b83287b31 321 Gene3D G3DSA:1.10.600.10 2 321 3.9E-111 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APT56_26315 d0c7c3a8cfda4890bdd7625b83287b31 321 Pfam PF00348 Polyprenyl synthetase 32 274 2.3E-76 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 APT56_26315 d0c7c3a8cfda4890bdd7625b83287b31 321 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 231 3.5E-50 T 11-10-2018 APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.3E-31 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 Gene3D G3DSA:3.40.50.720 1 234 6.5E-71 T 11-10-2018 APT56_23010 8f69fe2d9ef751ba9ad2ca0914c0cf73 234 SUPERFAMILY SSF51735 4 231 1.38E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 SUPERFAMILY SSF52210 128 291 1.3E-51 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 Gene3D G3DSA:3.40.50.261 129 293 3.4E-67 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 293 8.9E-127 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 Gene3D G3DSA:3.40.50.720 2 128 8.2E-43 T 11-10-2018 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 PRINTS PR01798 Succinyl-CoA synthase signature 85 102 5.8E-34 T 11-10-2018 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 PRINTS PR01798 Succinyl-CoA synthase signature 182 200 5.8E-34 T 11-10-2018 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 PRINTS PR01798 Succinyl-CoA synthase signature 213 226 5.8E-34 T 11-10-2018 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 PRINTS PR01798 Succinyl-CoA synthase signature 245 262 5.8E-34 T 11-10-2018 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 SUPERFAMILY SSF51735 1 127 8.45E-36 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 SMART SM00881 4 103 3.0E-29 T 11-10-2018 IPR003781 CoA-binding GO:0048037 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 293 40.535 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 Pfam PF00549 CoA-ligase 156 271 2.2E-15 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 PIRSF PIRSF001553 1 293 1.2E-116 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 241 254 - T 11-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 Pfam PF02629 CoA binding domain 6 102 2.4E-23 T 11-10-2018 IPR003781 CoA-binding GO:0048037 APT56_08270 a9359a7c60b44baa701c0a92ad752374 293 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 157 186 - T 11-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site APT56_06655 59fad88973a1a2e2684a6e55bb450d59 408 SUPERFAMILY SSF53474 99 405 9.92E-34 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_06655 59fad88973a1a2e2684a6e55bb450d59 408 Gene3D G3DSA:3.40.50.1820 93 405 2.6E-10 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_06655 59fad88973a1a2e2684a6e55bb450d59 408 Pfam PF06850 PHB de-polymerase C-terminus 206 406 5.8E-96 T 11-10-2018 IPR009656 PHB de-polymerase, C-terminal APT56_06655 59fad88973a1a2e2684a6e55bb450d59 408 PIRSF PIRSF020818 1 408 1.1E-203 T 11-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase APT56_06655 59fad88973a1a2e2684a6e55bb450d59 408 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 406 2.6E-191 T 11-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase APT56_24890 b259144e10701df9d1709bbc5ade23cc 77 SMART SM00530 6 62 7.0E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_24890 b259144e10701df9d1709bbc5ade23cc 77 Gene3D G3DSA:1.10.260.40 4 66 3.3E-10 T 11-10-2018 APT56_24890 b259144e10701df9d1709bbc5ade23cc 77 SUPERFAMILY SSF47413 1 69 8.45E-19 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_24890 b259144e10701df9d1709bbc5ade23cc 77 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 67 3.7E-24 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_10690 285d7310addda908fc2fa8597a187cfb 294 Gene3D G3DSA:3.40.190.10 102 288 1.0E-38 T 11-10-2018 APT56_10690 285d7310addda908fc2fa8597a187cfb 294 Pfam PF03466 LysR substrate binding domain 90 292 9.3E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_10690 285d7310addda908fc2fa8597a187cfb 294 SUPERFAMILY SSF46785 7 113 9.91E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10690 285d7310addda908fc2fa8597a187cfb 294 Gene3D G3DSA:1.10.10.10 5 92 3.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10690 285d7310addda908fc2fa8597a187cfb 294 SUPERFAMILY SSF53850 82 293 6.33E-32 T 11-10-2018 APT56_10690 285d7310addda908fc2fa8597a187cfb 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 6.0E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10690 285d7310addda908fc2fa8597a187cfb 294 Gene3D G3DSA:3.40.190.10 163 260 1.0E-38 T 11-10-2018 APT56_10690 285d7310addda908fc2fa8597a187cfb 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 5.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10690 285d7310addda908fc2fa8597a187cfb 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 5.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10690 285d7310addda908fc2fa8597a187cfb 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 5.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07815 de911bdbe0d7ebd19751eb11797f39e1 282 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 19 282 41.252 T 11-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 APT56_07815 de911bdbe0d7ebd19751eb11797f39e1 282 Gene3D G3DSA:1.20.58.480 23 282 6.1E-99 T 11-10-2018 APT56_07815 de911bdbe0d7ebd19751eb11797f39e1 282 TIGRFAM TIGR03036 trp_2_3_diox: tryptophan 2,3-dioxygenase 19 282 6.2E-133 T 11-10-2018 IPR017485 Tryptophan 2,3-dioxygenase, bacterial GO:0004833|GO:0019441 KEGG: 00380+1.13.11.11 APT56_07815 de911bdbe0d7ebd19751eb11797f39e1 282 SUPERFAMILY SSF140959 25 281 6.28E-103 T 11-10-2018 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like GO:0019441|GO:0020037|GO:0046872 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 APT56_07815 de911bdbe0d7ebd19751eb11797f39e1 282 Pfam PF03301 Tryptophan 2,3-dioxygenase 14 280 7.2E-68 T 11-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 APT56_22740 e2cdd835544706a0822df38b6977b15f 626 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 616 46.911 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 APT56_22740 e2cdd835544706a0822df38b6977b15f 626 SUPERFAMILY SSF82866 412 611 1.15E-40 T 11-10-2018 APT56_22740 e2cdd835544706a0822df38b6977b15f 626 Pfam PF02355 Protein export membrane protein 435 597 1.8E-19 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial APT56_22740 e2cdd835544706a0822df38b6977b15f 626 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 361 595 1.2E-73 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT56_22740 e2cdd835544706a0822df38b6977b15f 626 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 135 601 1.1E-142 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 APT56_22740 e2cdd835544706a0822df38b6977b15f 626 Pfam PF13721 SecD export protein N-terminal TM region 1 112 4.9E-34 T 11-10-2018 IPR027398 SecD export protein N-terminal TM domain APT56_22740 e2cdd835544706a0822df38b6977b15f 626 Pfam PF07549 SecD/SecF GG Motif 131 152 4.7E-6 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site APT56_22740 e2cdd835544706a0822df38b6977b15f 626 Gene3D G3DSA:1.20.1640.10 457 610 7.1E-10 T 11-10-2018 APT56_22740 e2cdd835544706a0822df38b6977b15f 626 Gene3D G3DSA:3.30.70.3400 233 439 1.3E-57 T 11-10-2018 APT56_22740 e2cdd835544706a0822df38b6977b15f 626 Gene3D G3DSA:3.30.1360.200 292 433 1.3E-57 T 11-10-2018 APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 SUPERFAMILY SSF49493 126 224 2.35E-21 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 Pfam PF01556 DnaJ C terminal domain 135 287 1.7E-31 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 PRINTS PR00625 DnaJ domain signature 25 40 1.7E-21 T 11-10-2018 IPR001623 DnaJ domain APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 PRINTS PR00625 DnaJ domain signature 41 61 1.7E-21 T 11-10-2018 IPR001623 DnaJ domain APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 PRINTS PR00625 DnaJ domain signature 7 25 1.7E-21 T 11-10-2018 IPR001623 DnaJ domain APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 PRINTS PR00625 DnaJ domain signature 61 80 1.7E-21 T 11-10-2018 IPR001623 DnaJ domain APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 Gene3D G3DSA:2.60.260.20 128 209 2.2E-22 T 11-10-2018 APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 Gene3D G3DSA:2.60.260.20 210 287 5.4E-25 T 11-10-2018 APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 SUPERFAMILY SSF49493 216 298 2.88E-17 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 Pfam PF00226 DnaJ domain 5 66 2.6E-23 T 11-10-2018 IPR001623 DnaJ domain APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 Gene3D G3DSA:1.10.287.110 2 122 2.9E-32 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 SMART SM00271 4 61 1.6E-26 T 11-10-2018 IPR001623 DnaJ domain APT56_22540 f9fc5d460000042e3d8ed0e8d8798739 315 SUPERFAMILY SSF46565 1 86 8.9E-29 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 Hamap MF_00006 Argininosuccinate lyase [argH]. 17 468 43.04 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 Gene3D G3DSA:1.10.40.30 375 447 1.3E-189 T 11-10-2018 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 TIGRFAM TIGR00838 argH: argininosuccinate lyase 19 462 1.5E-185 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 ProSitePatterns PS00163 Fumarate lyases signature. 290 299 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00145 Argininosuccinate lyase family signature 246 270 1.8E-66 T 11-10-2018 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00145 Argininosuccinate lyase family signature 290 306 1.8E-66 T 11-10-2018 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00145 Argininosuccinate lyase family signature 325 344 1.8E-66 T 11-10-2018 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00145 Argininosuccinate lyase family signature 116 138 1.8E-66 T 11-10-2018 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00145 Argininosuccinate lyase family signature 157 177 1.8E-66 T 11-10-2018 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00145 Argininosuccinate lyase family signature 208 224 1.8E-66 T 11-10-2018 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 8.0E-29 T 11-10-2018 IPR000362 Fumarate lyase family APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00149 Fumarate lyase superfamily signature 246 273 8.0E-29 T 11-10-2018 IPR000362 Fumarate lyase family APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00149 Fumarate lyase superfamily signature 162 180 8.0E-29 T 11-10-2018 IPR000362 Fumarate lyase family APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 PRINTS PR00149 Fumarate lyase superfamily signature 290 306 8.0E-29 T 11-10-2018 IPR000362 Fumarate lyase family APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 Pfam PF14698 Argininosuccinate lyase C-terminal 378 446 1.3E-27 T 11-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 Pfam PF00206 Lyase 22 315 4.5E-73 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 Gene3D G3DSA:1.20.200.10 134 461 1.3E-189 T 11-10-2018 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 SUPERFAMILY SSF48557 19 463 6.75E-149 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APT56_11590 f2bfc65b4c7571cbc0d25a65326c4941 473 Gene3D G3DSA:1.10.275.10 40 244 1.3E-189 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal APT56_08800 79f1203726e937d0e711f979b362d0b7 341 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 306 1.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08800 79f1203726e937d0e711f979b362d0b7 341 PRINTS PR00344 Bacterial sensor protein C-terminal signature 274 284 1.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08800 79f1203726e937d0e711f979b362d0b7 341 PRINTS PR00344 Bacterial sensor protein C-terminal signature 256 270 1.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08800 79f1203726e937d0e711f979b362d0b7 341 SMART SM00388 109 174 5.0E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_08800 79f1203726e937d0e711f979b362d0b7 341 SUPERFAMILY SSF55874 164 326 1.44E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_08800 79f1203726e937d0e711f979b362d0b7 341 Gene3D G3DSA:1.10.287.130 58 175 4.4E-17 T 11-10-2018 APT56_08800 79f1203726e937d0e711f979b362d0b7 341 Gene3D G3DSA:3.30.565.10 182 327 3.4E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_08800 79f1203726e937d0e711f979b362d0b7 341 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 222 326 1.6E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_08800 79f1203726e937d0e711f979b362d0b7 341 SUPERFAMILY SSF47384 92 173 4.32E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_08800 79f1203726e937d0e711f979b362d0b7 341 SMART SM00387 221 329 8.3E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_08800 79f1203726e937d0e711f979b362d0b7 341 Pfam PF00512 His Kinase A (phospho-acceptor) domain 109 172 3.2E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 Pfam PF12833 Helix-turn-helix domain 223 301 8.5E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 SUPERFAMILY SSF51215 41 182 1.96E-6 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 SUPERFAMILY SSF46689 200 248 3.14E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 Gene3D G3DSA:1.10.10.60 197 306 8.4E-26 T 11-10-2018 APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 284 300 6.9E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 269 284 6.9E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 SUPERFAMILY SSF46689 253 302 7.62E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 SMART SM00342 217 300 3.3E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_14450 b7999bef4ddf9ebc382d68e966f3340e 322 Pfam PF12852 Cupin 2 185 5.6E-31 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain APT56_06115 5dbda14b4b8929119c206c89aa63ae01 815 SUPERFAMILY SSF56935 121 815 3.87E-120 T 11-10-2018 APT56_06115 5dbda14b4b8929119c206c89aa63ae01 815 Gene3D G3DSA:2.40.170.20 268 815 2.5E-158 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_06115 5dbda14b4b8929119c206c89aa63ae01 815 SMART SM00965 68 119 6.8E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_06115 5dbda14b4b8929119c206c89aa63ae01 815 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 161 814 5.6E-109 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_06115 5dbda14b4b8929119c206c89aa63ae01 815 Gene3D G3DSA:2.170.130.10 137 267 6.9E-37 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_06115 5dbda14b4b8929119c206c89aa63ae01 815 Gene3D G3DSA:3.55.50.30 46 117 7.8E-26 T 11-10-2018 APT56_06115 5dbda14b4b8929119c206c89aa63ae01 815 Pfam PF00593 TonB dependent receptor 366 814 3.3E-52 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_06115 5dbda14b4b8929119c206c89aa63ae01 815 Pfam PF07715 TonB-dependent Receptor Plug Domain 159 258 1.8E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_02905 6010bd848be25bbedba680847af82a06 285 Pfam PF01478 Type IV leader peptidase family 137 243 7.4E-22 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 APT56_02905 6010bd848be25bbedba680847af82a06 285 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 23 125 1.6E-23 T 11-10-2018 IPR010627 Peptidase A24A, N-terminal APT56_02905 6010bd848be25bbedba680847af82a06 285 Gene3D G3DSA:1.20.120.1220 126 244 4.4E-5 T 11-10-2018 APT56_02905 6010bd848be25bbedba680847af82a06 285 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 201 211 1.0E-23 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial APT56_02905 6010bd848be25bbedba680847af82a06 285 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 224 239 1.0E-23 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial APT56_02905 6010bd848be25bbedba680847af82a06 285 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 144 161 1.0E-23 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial APT56_02905 6010bd848be25bbedba680847af82a06 285 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 212 223 1.0E-23 T 11-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial APT56_13600 cd2ae8008199e4beaddaa4d136019f68 275 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 12 265 4.8E-92 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APT56_13600 cd2ae8008199e4beaddaa4d136019f68 275 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 9 267 1.3E-104 T 11-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 APT56_13600 cd2ae8008199e4beaddaa4d136019f68 275 Gene3D G3DSA:1.10.3720.10 11 267 2.5E-58 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13600 cd2ae8008199e4beaddaa4d136019f68 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 71 261 7.0E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13600 cd2ae8008199e4beaddaa4d136019f68 275 SUPERFAMILY SSF161098 7 259 1.11E-49 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03620 1c65354431794ce54d39203ff733e127 330 Gene3D G3DSA:3.40.190.10 132 255 5.2E-101 T 11-10-2018 APT56_03620 1c65354431794ce54d39203ff733e127 330 PIRSF PIRSF017082 2 329 2.5E-71 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_03620 1c65354431794ce54d39203ff733e127 330 SUPERFAMILY SSF53850 126 292 1.38E-10 T 11-10-2018 APT56_03620 1c65354431794ce54d39203ff733e127 330 Gene3D G3DSA:3.40.190.150 35 320 5.2E-101 T 11-10-2018 APT56_03620 1c65354431794ce54d39203ff733e127 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 325 1.7E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20345 791e827849b0d03a7fc93e48ce6cfd38 335 Pfam PF09084 NMT1/THI5 like 53 272 2.9E-23 T 11-10-2018 IPR015168 SsuA/THI5-like APT56_20345 791e827849b0d03a7fc93e48ce6cfd38 335 SUPERFAMILY SSF53850 40 273 1.52E-36 T 11-10-2018 APT56_20345 791e827849b0d03a7fc93e48ce6cfd38 335 Gene3D G3DSA:3.40.190.10 151 333 9.3E-24 T 11-10-2018 APT56_20345 791e827849b0d03a7fc93e48ce6cfd38 335 Gene3D G3DSA:3.40.190.10 40 150 1.3E-12 T 11-10-2018 APT56_14455 16380478fa169fafa6d2153605105f1d 288 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 51 285 5.4E-79 T 11-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 APT56_14455 16380478fa169fafa6d2153605105f1d 288 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 12 287 47.76 T 11-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 APT56_14455 16380478fa169fafa6d2153605105f1d 288 Pfam PF02666 Phosphatidylserine decarboxylase 65 284 3.7E-62 T 11-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 APT56_16340 2f48f565813966dcee77a945c907a25b 328 PIRSF PIRSF017082 1 327 1.2E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_16340 2f48f565813966dcee77a945c907a25b 328 Gene3D G3DSA:3.40.190.10 131 252 2.6E-90 T 11-10-2018 APT56_16340 2f48f565813966dcee77a945c907a25b 328 Gene3D G3DSA:3.40.190.150 34 312 2.6E-90 T 11-10-2018 APT56_16340 2f48f565813966dcee77a945c907a25b 328 SUPERFAMILY SSF53850 119 283 2.78E-9 T 11-10-2018 APT56_16340 2f48f565813966dcee77a945c907a25b 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 323 2.9E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_07175 1ff0fee5fffed8c3abca55b91b9cde33 238 Gene3D G3DSA:1.10.1060.10 108 238 2.4E-57 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APT56_07175 1ff0fee5fffed8c3abca55b91b9cde33 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 3.5E-10 T 11-10-2018 APT56_07175 1ff0fee5fffed8c3abca55b91b9cde33 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_07175 1ff0fee5fffed8c3abca55b91b9cde33 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 230 3.4E-85 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07175 1ff0fee5fffed8c3abca55b91b9cde33 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 8 113 1.0E-33 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07175 1ff0fee5fffed8c3abca55b91b9cde33 238 Gene3D G3DSA:3.10.20.30 1 107 8.1E-39 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_07175 1ff0fee5fffed8c3abca55b91b9cde33 238 SUPERFAMILY SSF46548 108 236 8.02E-39 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APT56_07175 1ff0fee5fffed8c3abca55b91b9cde33 238 SUPERFAMILY SSF54292 5 107 4.01E-30 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_24655 ff698ca8c6ac0ca216bbbcf04ec1f252 643 Pfam PF00733 Asparagine synthase 256 627 9.0E-113 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 APT56_24655 ff698ca8c6ac0ca216bbbcf04ec1f252 643 SUPERFAMILY SSF56235 1 224 7.03E-59 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_24655 ff698ca8c6ac0ca216bbbcf04ec1f252 643 Pfam PF13537 Glutamine amidotransferase domain 47 169 2.8E-42 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain APT56_24655 ff698ca8c6ac0ca216bbbcf04ec1f252 643 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 563 5.5E-136 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 APT56_24655 ff698ca8c6ac0ca216bbbcf04ec1f252 643 SUPERFAMILY SSF52402 249 623 1.09E-90 T 11-10-2018 APT56_24655 ff698ca8c6ac0ca216bbbcf04ec1f252 643 Gene3D G3DSA:3.60.20.10 2 190 4.0E-55 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_24655 ff698ca8c6ac0ca216bbbcf04ec1f252 643 PIRSF PIRSF001589 1 642 4.9E-160 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 APT56_08470 b30285328e18a62f5aa7b0226682ab3f 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 325 3.4E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_08470 b30285328e18a62f5aa7b0226682ab3f 329 PIRSF PIRSF017082 1 328 7.7E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_08470 b30285328e18a62f5aa7b0226682ab3f 329 Gene3D G3DSA:3.40.190.10 131 254 2.5E-114 T 11-10-2018 APT56_08470 b30285328e18a62f5aa7b0226682ab3f 329 SUPERFAMILY SSF53850 118 286 1.47E-8 T 11-10-2018 APT56_08470 b30285328e18a62f5aa7b0226682ab3f 329 Gene3D G3DSA:3.40.190.150 33 319 2.5E-114 T 11-10-2018 APT56_05695 bb24699c93eaf9eb9382c61a51152486 202 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 14 198 2.5E-71 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 APT56_05695 bb24699c93eaf9eb9382c61a51152486 202 PIRSF PIRSF001296 10 202 7.6E-76 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 APT56_05695 bb24699c93eaf9eb9382c61a51152486 202 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 11 198 35.775 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 APT56_05695 bb24699c93eaf9eb9382c61a51152486 202 Pfam PF02669 K+-transporting ATPase, c chain 15 197 6.9E-74 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 APT56_03790 910c785d0be808bd67e72f1085086822 352 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 343 1.1E-123 T 11-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 APT56_03790 910c785d0be808bd67e72f1085086822 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 296 317 3.2E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_03790 910c785d0be808bd67e72f1085086822 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 222 239 3.2E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_03790 910c785d0be808bd67e72f1085086822 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 266 281 3.2E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_03790 910c785d0be808bd67e72f1085086822 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 202 220 3.2E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_03790 910c785d0be808bd67e72f1085086822 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 3.2E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_03790 910c785d0be808bd67e72f1085086822 352 SUPERFAMILY SSF160544 238 344 3.79E-33 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal APT56_03790 910c785d0be808bd67e72f1085086822 352 Gene3D G3DSA:3.40.1690.10 212 349 3.6E-52 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal APT56_03790 910c785d0be808bd67e72f1085086822 352 Pfam PF01312 FlhB HrpN YscU SpaS Family 3 341 3.2E-108 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_01860 c0d309606ec11228b879a24868f5e725 390 Gene3D G3DSA:3.20.20.30 1 365 3.5E-136 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_01860 c0d309606ec11228b879a24868f5e725 390 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 358 3.5E-183 T 11-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 APT56_01860 c0d309606ec11228b879a24868f5e725 390 Pfam PF00296 Luciferase-like monooxygenase 1 334 1.8E-84 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT56_01860 c0d309606ec11228b879a24868f5e725 390 SUPERFAMILY SSF51679 1 359 1.23E-90 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_01860 c0d309606ec11228b879a24868f5e725 390 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 388 77.206 T 11-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 Gene3D G3DSA:3.60.120.10 1 502 2.5E-170 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 SUPERFAMILY SSF56322 14 495 2.75E-151 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 Pfam PF04715 Anthranilate synthase component I, N terminal region 26 177 4.3E-26 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 Pfam PF00425 chorismate binding enzyme 226 487 1.7E-93 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 PRINTS PR00095 Anthranilate synthase component I signature 429 443 2.8E-22 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 PRINTS PR00095 Anthranilate synthase component I signature 444 458 2.8E-22 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 PRINTS PR00095 Anthranilate synthase component I signature 335 348 2.8E-22 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 PRINTS PR00095 Anthranilate synthase component I signature 349 362 2.8E-22 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_02035 eb3b73adf84cb3153e218304a9fe22e7 506 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 495 2.5E-157 T 11-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APT56_21960 2c6fd593a573528b45e8203414672348 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 287 304 5.8E-39 T 11-10-2018 APT56_21960 2c6fd593a573528b45e8203414672348 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 200 214 5.8E-39 T 11-10-2018 APT56_21960 2c6fd593a573528b45e8203414672348 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 239 253 5.8E-39 T 11-10-2018 APT56_21960 2c6fd593a573528b45e8203414672348 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 312 323 5.8E-39 T 11-10-2018 APT56_21960 2c6fd593a573528b45e8203414672348 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 270 286 5.8E-39 T 11-10-2018 APT56_21960 2c6fd593a573528b45e8203414672348 384 Gene3D G3DSA:3.50.30.20 14 160 2.4E-57 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21960 2c6fd593a573528b45e8203414672348 384 SUPERFAMILY SSF52317 165 382 1.48E-60 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_21960 2c6fd593a573528b45e8203414672348 384 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 16 143 9.9E-52 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21960 2c6fd593a573528b45e8203414672348 384 SUPERFAMILY SSF52021 15 150 3.92E-56 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21960 2c6fd593a573528b45e8203414672348 384 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 14 384 47.659 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21960 2c6fd593a573528b45e8203414672348 384 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 16 380 2.2E-142 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21960 2c6fd593a573528b45e8203414672348 384 Pfam PF00117 Glutamine amidotransferase class-I 203 378 2.6E-43 T 11-10-2018 IPR017926 Glutamine amidotransferase APT56_21960 2c6fd593a573528b45e8203414672348 384 SMART SM01097 14 144 6.7E-92 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21960 2c6fd593a573528b45e8203414672348 384 Gene3D G3DSA:3.40.50.880 161 382 4.4E-73 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_21960 2c6fd593a573528b45e8203414672348 384 PRINTS PR00096 Glutamine amidotransferase superfamily signature 242 251 2.3E-10 T 11-10-2018 APT56_21960 2c6fd593a573528b45e8203414672348 384 PRINTS PR00096 Glutamine amidotransferase superfamily signature 355 368 2.3E-10 T 11-10-2018 APT56_21960 2c6fd593a573528b45e8203414672348 384 PRINTS PR00096 Glutamine amidotransferase superfamily signature 270 281 2.3E-10 T 11-10-2018 APT56_26870 268f71b693ea7cf68ba964fd57da1be0 153 Gene3D G3DSA:1.10.10.10 9 150 2.3E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26870 268f71b693ea7cf68ba964fd57da1be0 153 SMART SM00347 37 136 2.5E-25 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_26870 268f71b693ea7cf68ba964fd57da1be0 153 Pfam PF01047 MarR family 44 102 4.0E-16 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_26870 268f71b693ea7cf68ba964fd57da1be0 153 SUPERFAMILY SSF46785 10 149 5.86E-35 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26870 268f71b693ea7cf68ba964fd57da1be0 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 93 1.2E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_26870 268f71b693ea7cf68ba964fd57da1be0 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 113 1.2E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_26870 268f71b693ea7cf68ba964fd57da1be0 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 77 1.2E-5 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_11575 2f1b83860f0e52c544f401990074de99 453 SUPERFAMILY SSF47005 160 205 4.19E-11 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APT56_11575 2f1b83860f0e52c544f401990074de99 453 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT56_11575 2f1b83860f0e52c544f401990074de99 453 SUPERFAMILY SSF51230 2 96 8.38E-24 T 11-10-2018 IPR011053 Single hybrid motif APT56_11575 2f1b83860f0e52c544f401990074de99 453 Pfam PF00364 Biotin-requiring enzyme 5 77 1.2E-17 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_11575 2f1b83860f0e52c544f401990074de99 453 Pfam PF02817 e3 binding domain 166 200 1.1E-10 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 APT56_11575 2f1b83860f0e52c544f401990074de99 453 Gene3D G3DSA:3.30.559.10 209 450 6.7E-80 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 APT56_11575 2f1b83860f0e52c544f401990074de99 453 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 222 451 2.0E-78 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 APT56_11575 2f1b83860f0e52c544f401990074de99 453 Gene3D G3DSA:2.40.50.100 2 105 8.4E-20 T 11-10-2018 APT56_11575 2f1b83860f0e52c544f401990074de99 453 SUPERFAMILY SSF52777 217 451 1.75E-76 T 11-10-2018 APT56_11575 2f1b83860f0e52c544f401990074de99 453 Gene3D G3DSA:4.10.320.10 154 207 1.1E-14 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 22 264 2.7E-79 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 PIRSF PIRSF000513 16 271 9.1E-90 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 Pfam PF02110 Hydroxyethylthiazole kinase family 22 262 6.0E-78 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 71 79 1.1E-36 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 40 61 1.1E-36 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 171 188 1.1E-36 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 97 114 1.1E-36 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 27 34 1.1E-36 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 127 141 1.1E-36 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 SUPERFAMILY SSF53613 21 262 3.74E-59 T 11-10-2018 IPR029056 Ribokinase-like APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 Gene3D G3DSA:3.40.1190.20 10 270 7.2E-88 T 11-10-2018 IPR029056 Ribokinase-like APT56_17490 d9a29d6aeac91bb0502d3295665318e4 273 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 21 267 31.699 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_16635 1d3582e36aef704c481d16183cafa3f3 147 SUPERFAMILY SSF46785 8 131 5.06E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16635 1d3582e36aef704c481d16183cafa3f3 147 Pfam PF02082 Transcriptional regulator 1 81 2.0E-15 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type APT56_16635 1d3582e36aef704c481d16183cafa3f3 147 Gene3D G3DSA:1.10.10.10 1 143 1.0E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PIRSF PIRSF000350 1 463 2.7E-68 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 SUPERFAMILY SSF51905 2 331 8.98E-60 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 SUPERFAMILY SSF55424 342 464 9.28E-36 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 Gene3D G3DSA:3.30.390.30 342 465 5.6E-39 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 342 454 4.0E-32 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 1.4E-35 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 275 1.4E-35 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 287 309 1.4E-35 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 1.4E-35 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.4E-35 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 Gene3D G3DSA:3.50.50.60 6 327 4.4E-104 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 338 359 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 260 274 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 429 449 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 302 309 1.2E-65 T 11-10-2018 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 322 1.5E-59 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 464 3.4E-150 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 APT56_25880 279ef518ddbf86dea79bf79a042bfd84 465 Gene3D G3DSA:3.50.50.60 146 266 4.4E-104 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_07855 0eabb8e03db5f3dee3826459cc3bb767 219 SUPERFAMILY SSF52172 1 177 2.99E-37 T 11-10-2018 IPR011006 CheY-like superfamily APT56_07855 0eabb8e03db5f3dee3826459cc3bb767 219 SMART SM00862 145 216 6.4E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_07855 0eabb8e03db5f3dee3826459cc3bb767 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 215 5.6E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_07855 0eabb8e03db5f3dee3826459cc3bb767 219 Gene3D G3DSA:1.10.10.10 122 218 1.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07855 0eabb8e03db5f3dee3826459cc3bb767 219 SMART SM00448 1 112 8.9E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_07855 0eabb8e03db5f3dee3826459cc3bb767 219 Pfam PF00072 Response regulator receiver domain 3 112 1.7E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_07855 0eabb8e03db5f3dee3826459cc3bb767 219 Gene3D G3DSA:3.40.50.2300 1 121 3.1E-41 T 11-10-2018 APT56_05105 997ab528d755e95c397ed3934f7e6aca 543 Pfam PF00501 AMP-binding enzyme 35 420 2.0E-69 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_05105 997ab528d755e95c397ed3934f7e6aca 543 Gene3D G3DSA:3.30.300.30 414 522 5.8E-25 T 11-10-2018 APT56_05105 997ab528d755e95c397ed3934f7e6aca 543 ProSitePatterns PS00455 Putative AMP-binding domain signature. 165 176 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_05105 997ab528d755e95c397ed3934f7e6aca 543 Pfam PF13193 AMP-binding enzyme C-terminal domain 429 510 1.9E-15 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_05105 997ab528d755e95c397ed3934f7e6aca 543 SUPERFAMILY SSF56801 4 521 4.58E-111 T 11-10-2018 APT56_05105 997ab528d755e95c397ed3934f7e6aca 543 Gene3D G3DSA:3.40.50.12780 4 413 3.9E-79 T 11-10-2018 APT56_20730 2d88c82c226370d617801370787a9dc7 703 SMART SM00382 480 674 2.9E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_20730 2d88c82c226370d617801370787a9dc7 703 Gene3D G3DSA:1.20.1560.10 128 439 1.4E-41 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_20730 2d88c82c226370d617801370787a9dc7 703 Pfam PF00005 ABC transporter 476 620 3.3E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_20730 2d88c82c226370d617801370787a9dc7 703 Pfam PF00664 ABC transporter transmembrane region 142 404 2.2E-12 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_20730 2d88c82c226370d617801370787a9dc7 703 Gene3D G3DSA:3.40.50.300 446 690 2.2E-68 T 11-10-2018 APT56_20730 2d88c82c226370d617801370787a9dc7 703 SUPERFAMILY SSF52540 447 680 2.0E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_20730 2d88c82c226370d617801370787a9dc7 703 SUPERFAMILY SSF90123 131 431 3.4E-37 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_21150 a3aa23cf83be74556cf1e2f3da5950c3 334 PIRSF PIRSF000294 1 331 9.6E-134 T 11-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 APT56_21150 a3aa23cf83be74556cf1e2f3da5950c3 334 Gene3D G3DSA:1.10.760.10 42 189 5.9E-117 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21150 a3aa23cf83be74556cf1e2f3da5950c3 334 SUPERFAMILY SSF46626 25 177 1.67E-51 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21150 a3aa23cf83be74556cf1e2f3da5950c3 334 Gene3D G3DSA:1.10.760.10 40 312 5.9E-117 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21150 a3aa23cf83be74556cf1e2f3da5950c3 334 Pfam PF03150 Di-haem cytochrome c peroxidase 42 189 3.2E-53 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 APT56_21150 a3aa23cf83be74556cf1e2f3da5950c3 334 Pfam PF00034 Cytochrome c 198 307 8.1E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_21150 a3aa23cf83be74556cf1e2f3da5950c3 334 SUPERFAMILY SSF46626 176 328 5.78E-43 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_19590 d183d6ce532fe2b2f0b4761663b74809 243 Pfam PF00005 ABC transporter 20 169 4.2E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19590 d183d6ce532fe2b2f0b4761663b74809 243 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_19590 d183d6ce532fe2b2f0b4761663b74809 243 SMART SM00382 29 217 7.9E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19590 d183d6ce532fe2b2f0b4761663b74809 243 SUPERFAMILY SSF52540 5 229 2.78E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19590 d183d6ce532fe2b2f0b4761663b74809 243 Gene3D G3DSA:3.40.50.300 1 241 1.5E-74 T 11-10-2018 APT56_19590 d183d6ce532fe2b2f0b4761663b74809 243 PIRSF PIRSF039085 1 243 5.0E-107 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 Gene3D G3DSA:1.10.1440.20 570 626 8.8E-6 T 11-10-2018 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 144 157 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 409 420 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 197 210 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 168 176 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 211 226 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 471 484 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 287 300 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 273 286 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 PRINTS PR00415 Aconitase family signature 366 380 1.1E-35 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 SUPERFAMILY SSF53732 12 591 4.05E-176 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 Gene3D G3DSA:3.30.499.10 368 568 2.4E-68 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 Gene3D G3DSA:3.20.19.10 633 866 1.1E-74 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 Pfam PF00694 Aconitase C-terminal domain 666 793 3.0E-33 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 Pfam PF00330 Aconitase family (aconitate hydratase) 67 540 7.5E-148 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 SUPERFAMILY SSF52016 608 864 1.28E-61 T 11-10-2018 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 ProSitePatterns PS00450 Aconitase family signature 1. 405 421 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 Gene3D G3DSA:3.30.499.20 15 365 2.5E-133 T 11-10-2018 APT56_23520 4a3008f90076e3d7f3ddc63245bdcfb3 880 ProSitePatterns PS01244 Aconitase family signature 2. 471 484 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_26945 9e03c8b98ae9bc023d743bd11cff2bea 149 Gene3D G3DSA:3.40.630.30 2 147 1.1E-40 T 11-10-2018 APT56_26945 9e03c8b98ae9bc023d743bd11cff2bea 149 SUPERFAMILY SSF55729 5 134 1.56E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_26945 9e03c8b98ae9bc023d743bd11cff2bea 149 Pfam PF00583 Acetyltransferase (GNAT) family 43 134 1.1E-13 T 11-10-2018 IPR000182 GNAT domain APT56_13885 a1f020943f93771e5a5482c9098af4f7 209 Gene3D G3DSA:1.20.1050.10 81 203 3.5E-22 T 11-10-2018 APT56_13885 a1f020943f93771e5a5482c9098af4f7 209 SUPERFAMILY SSF47616 70 203 2.37E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_13885 a1f020943f93771e5a5482c9098af4f7 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 9 71 2.9E-13 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_13885 a1f020943f93771e5a5482c9098af4f7 209 SUPERFAMILY SSF52833 4 77 4.94E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_13885 a1f020943f93771e5a5482c9098af4f7 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 113 195 8.8E-6 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_13885 a1f020943f93771e5a5482c9098af4f7 209 Gene3D G3DSA:3.40.30.10 1 80 3.5E-20 T 11-10-2018 APT56_05440 e0477a607a8af78d8e63116078b1d5f7 325 Gene3D G3DSA:3.40.190.150 27 319 5.8E-111 T 11-10-2018 APT56_05440 e0477a607a8af78d8e63116078b1d5f7 325 PIRSF PIRSF017082 1 325 1.7E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_05440 e0477a607a8af78d8e63116078b1d5f7 325 Gene3D G3DSA:3.40.190.10 125 248 5.8E-111 T 11-10-2018 APT56_05440 e0477a607a8af78d8e63116078b1d5f7 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 321 4.1E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_05440 e0477a607a8af78d8e63116078b1d5f7 325 SUPERFAMILY SSF53850 113 287 2.33E-11 T 11-10-2018 APT56_23770 8b08efd8e2df1a80be3f32b6e2accef9 349 Gene3D G3DSA:3.20.20.100 1 349 7.2E-132 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_23770 8b08efd8e2df1a80be3f32b6e2accef9 349 Pfam PF00248 Aldo/keto reductase family 16 340 2.9E-71 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_23770 8b08efd8e2df1a80be3f32b6e2accef9 349 SUPERFAMILY SSF51430 1 347 1.19E-108 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_23770 8b08efd8e2df1a80be3f32b6e2accef9 349 PRINTS PR00069 Aldo-keto reductase signature 119 137 9.6E-9 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_23770 8b08efd8e2df1a80be3f32b6e2accef9 349 PRINTS PR00069 Aldo-keto reductase signature 167 184 9.6E-9 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_02435 9a6f123569562b25f58fff2f58137f83 329 SUPERFAMILY SSF53850 109 289 1.86E-7 T 11-10-2018 APT56_02435 9a6f123569562b25f58fff2f58137f83 329 PIRSF PIRSF017082 1 324 2.1E-61 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02435 9a6f123569562b25f58fff2f58137f83 329 Gene3D G3DSA:3.40.190.10 130 255 1.7E-89 T 11-10-2018 APT56_02435 9a6f123569562b25f58fff2f58137f83 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 324 1.0E-59 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02435 9a6f123569562b25f58fff2f58137f83 329 Gene3D G3DSA:3.40.190.150 32 303 1.7E-89 T 11-10-2018 APT56_26635 3973d18376e8fe8e7e789623390deed6 329 Gene3D G3DSA:3.40.50.10490 7 200 4.1E-63 T 11-10-2018 APT56_26635 3973d18376e8fe8e7e789623390deed6 329 Pfam PF01380 SIS domain 45 177 3.8E-31 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_26635 3973d18376e8fe8e7e789623390deed6 329 Gene3D G3DSA:3.10.580.10 201 326 1.0E-39 T 11-10-2018 APT56_26635 3973d18376e8fe8e7e789623390deed6 329 Pfam PF00571 CBS domain 277 326 1.2E-5 T 11-10-2018 IPR000644 CBS domain APT56_26635 3973d18376e8fe8e7e789623390deed6 329 Pfam PF00571 CBS domain 215 263 2.8E-5 T 11-10-2018 IPR000644 CBS domain APT56_26635 3973d18376e8fe8e7e789623390deed6 329 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 319 1.2E-102 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 APT56_26635 3973d18376e8fe8e7e789623390deed6 329 PIRSF PIRSF004692 1 329 1.1E-127 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 APT56_26635 3973d18376e8fe8e7e789623390deed6 329 SUPERFAMILY SSF53697 17 327 3.11E-64 T 11-10-2018 APT56_26635 3973d18376e8fe8e7e789623390deed6 329 SMART SM00116 215 263 0.25 T 11-10-2018 IPR000644 CBS domain APT56_26635 3973d18376e8fe8e7e789623390deed6 329 SMART SM00116 280 328 15.0 T 11-10-2018 IPR000644 CBS domain APT56_27045 9f3b898bf39013ba57770d430c606868 476 Gene3D G3DSA:3.40.50.11290 215 312 2.5E-44 T 11-10-2018 APT56_27045 9f3b898bf39013ba57770d430c606868 476 Gene3D G3DSA:3.30.1490.270 349 409 1.6E-25 T 11-10-2018 APT56_27045 9f3b898bf39013ba57770d430c606868 476 Pfam PF14403 Circularly permuted ATP-grasp type 2 77 452 5.8E-166 T 11-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 APT56_27045 9f3b898bf39013ba57770d430c606868 476 SUPERFAMILY SSF56059 20 467 3.2E-62 T 11-10-2018 APT56_27045 9f3b898bf39013ba57770d430c606868 476 PIRSF PIRSF005522 1 476 4.7E-229 T 11-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 APT56_12870 62c8a0921dba100a88d40a5a44225687 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 7.7E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_12870 62c8a0921dba100a88d40a5a44225687 322 Gene3D G3DSA:3.40.190.290 95 296 5.7E-43 T 11-10-2018 APT56_12870 62c8a0921dba100a88d40a5a44225687 322 Gene3D G3DSA:1.10.10.10 5 93 2.7E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12870 62c8a0921dba100a88d40a5a44225687 322 SUPERFAMILY SSF53850 91 301 1.61E-35 T 11-10-2018 APT56_12870 62c8a0921dba100a88d40a5a44225687 322 SUPERFAMILY SSF46785 5 90 2.81E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12870 62c8a0921dba100a88d40a5a44225687 322 Pfam PF03466 LysR substrate binding domain 90 297 7.9E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21840 f0a4efe973dcbf2978ded5b4b5aef590 258 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 12 258 1.6E-121 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 APT56_21840 f0a4efe973dcbf2978ded5b4b5aef590 258 Gene3D G3DSA:3.40.50.300 10 256 4.7E-66 T 11-10-2018 APT56_21840 f0a4efe973dcbf2978ded5b4b5aef590 258 SMART SM00382 36 230 4.7E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21840 f0a4efe973dcbf2978ded5b4b5aef590 258 Pfam PF00005 ABC transporter 28 182 5.7E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21840 f0a4efe973dcbf2978ded5b4b5aef590 258 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21840 f0a4efe973dcbf2978ded5b4b5aef590 258 SUPERFAMILY SSF52540 11 244 5.44E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11615 7e3fad73a723868c8d202d1aab4ba63d 119 Gene3D G3DSA:3.10.180.10 1 114 6.7E-7 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_11615 7e3fad73a723868c8d202d1aab4ba63d 119 SUPERFAMILY SSF54593 4 116 1.29E-11 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_20985 f44fc5ed59b49d1ddf86d28bd186456f 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 220 8.8E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_20985 f44fc5ed59b49d1ddf86d28bd186456f 229 Gene3D G3DSA:1.10.3720.10 6 221 2.1E-45 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20985 f44fc5ed59b49d1ddf86d28bd186456f 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 112 8.4E-26 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_20985 f44fc5ed59b49d1ddf86d28bd186456f 229 SUPERFAMILY SSF161098 14 205 5.1E-39 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20100 4c9e9237dc132ab11ad02e9153c54c4f 240 SUPERFAMILY SSF52096 5 238 4.3E-39 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_20100 4c9e9237dc132ab11ad02e9153c54c4f 240 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 207 1.3E-22 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_20100 4c9e9237dc132ab11ad02e9153c54c4f 240 Gene3D G3DSA:3.90.226.10 1 240 2.3E-62 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 Gene3D G3DSA:2.40.50.100 47 80 3.5E-10 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 Gene3D G3DSA:2.40.50.100 215 249 6.0E-18 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 Pfam PF13437 HlyD family secretion protein 215 320 2.2E-14 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 Gene3D G3DSA:1.10.287.470 81 111 3.5E-10 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 SUPERFAMILY SSF111369 120 299 3.66E-6 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 Pfam PF13533 Biotin-lipoyl like 49 94 3.9E-7 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_24925 98f8876d8d5f5120efceae779484fa47 355 Gene3D G3DSA:2.40.30.170 250 300 6.0E-18 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 Gene3D G3DSA:1.10.287.470 182 214 6.0E-18 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 Gene3D G3DSA:1.10.287.470 117 181 3.4E-6 T 11-10-2018 APT56_24925 98f8876d8d5f5120efceae779484fa47 355 SUPERFAMILY SSF111369 41 105 1.44E-7 T 11-10-2018 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 PIRSF PIRSF002560 1 157 1.9E-73 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 Gene3D G3DSA:1.20.1260.10 1 156 3.4E-70 T 11-10-2018 IPR012347 Ferritin-like APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 Pfam PF00210 Ferritin-like domain 9 143 2.3E-39 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 8.5E-76 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 SUPERFAMILY SSF47240 1 154 4.28E-54 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 PRINTS PR00601 Bacterioferritin signature 44 64 1.5E-67 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 PRINTS PR00601 Bacterioferritin signature 86 106 1.5E-67 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 PRINTS PR00601 Bacterioferritin signature 3 22 1.5E-67 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 PRINTS PR00601 Bacterioferritin signature 128 149 1.5E-67 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 PRINTS PR00601 Bacterioferritin signature 23 43 1.5E-67 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 PRINTS PR00601 Bacterioferritin signature 65 85 1.5E-67 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_00990 bbe9a726a33ebec863c4015a82b0f5c9 158 PRINTS PR00601 Bacterioferritin signature 107 127 1.5E-67 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 APT56_26655 e0d5888326212f16ada756178bdf786e 264 SMART SM00382 46 239 8.6E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_26655 e0d5888326212f16ada756178bdf786e 264 Pfam PF00005 ABC transporter 38 189 6.5E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_26655 e0d5888326212f16ada756178bdf786e 264 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 22 264 2.0E-114 T 11-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 APT56_26655 e0d5888326212f16ada756178bdf786e 264 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_26655 e0d5888326212f16ada756178bdf786e 264 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 237 259 4.9E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_26655 e0d5888326212f16ada756178bdf786e 264 Gene3D G3DSA:3.40.50.300 20 264 2.6E-69 T 11-10-2018 APT56_26655 e0d5888326212f16ada756178bdf786e 264 SUPERFAMILY SSF52540 22 260 2.32E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_23705 1cbf1bc68c4e9059bbcf3ca16b6978b7 338 Pfam PF08279 HTH domain 7 61 1.4E-13 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 APT56_23705 1cbf1bc68c4e9059bbcf3ca16b6978b7 338 SUPERFAMILY SSF46785 4 58 4.19E-9 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23705 1cbf1bc68c4e9059bbcf3ca16b6978b7 338 Pfam PF13280 WYL domain 141 314 3.6E-30 T 11-10-2018 IPR026881 WYL domain APT56_23705 1cbf1bc68c4e9059bbcf3ca16b6978b7 338 Gene3D G3DSA:1.10.10.10 1 66 4.7E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23705 1cbf1bc68c4e9059bbcf3ca16b6978b7 338 PIRSF PIRSF016838 1 325 1.8E-19 T 11-10-2018 IPR028349 Protein PafC APT56_05390 cae5fecaf99433287b1554034f8d4f24 111 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 11 107 6.9E-22 T 11-10-2018 IPR008407 Branched-chain amino acid transport, AzlD APT56_19485 5cb0b51071a4cde17541fcb719b22694 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 165 1.0E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_19485 5cb0b51071a4cde17541fcb719b22694 720 Gene3D G3DSA:2.170.130.10 59 176 2.5E-24 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_19485 5cb0b51071a4cde17541fcb719b22694 720 Pfam PF00593 TonB dependent receptor 290 718 1.7E-45 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_19485 5cb0b51071a4cde17541fcb719b22694 720 Gene3D G3DSA:2.40.170.20 183 720 7.7E-77 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_19485 5cb0b51071a4cde17541fcb719b22694 720 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 703 720 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_19485 5cb0b51071a4cde17541fcb719b22694 720 SUPERFAMILY SSF56935 64 720 1.62E-93 T 11-10-2018 APT56_20050 9febf5cae575c172c58d9f37d6e09cca 522 SUPERFAMILY SSF53649 6 492 7.2E-108 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APT56_20050 9febf5cae575c172c58d9f37d6e09cca 522 Pfam PF00884 Sulfatase 5 383 1.7E-52 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 APT56_20050 9febf5cae575c172c58d9f37d6e09cca 522 Gene3D G3DSA:3.40.720.10 4 498 3.7E-148 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_09145 adb87621049718b519dc7b575f2bfb1e 493 SUPERFAMILY SSF50249 45 130 2.62E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_09145 adb87621049718b519dc7b575f2bfb1e 493 Gene3D G3DSA:3.40.1260.20 406 493 3.4E-5 T 11-10-2018 APT56_09145 adb87621049718b519dc7b575f2bfb1e 493 SMART SM00316 43 124 1.5E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_09145 adb87621049718b519dc7b575f2bfb1e 493 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 19 430 3.8E-152 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 APT56_09145 adb87621049718b519dc7b575f2bfb1e 493 Pfam PF10150 Ribonuclease E/G family 126 397 1.2E-100 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 APT56_09145 adb87621049718b519dc7b575f2bfb1e 493 Gene3D G3DSA:2.40.50.140 37 130 5.8E-29 T 11-10-2018 APT56_23920 0ddd4ab251256d78cd1e56cf11e6b9ef 159 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 119 3.8E-44 T 11-10-2018 IPR028973 PhnB-like APT56_23920 0ddd4ab251256d78cd1e56cf11e6b9ef 159 Gene3D G3DSA:3.10.180.70 1 159 2.1E-59 T 11-10-2018 APT56_23920 0ddd4ab251256d78cd1e56cf11e6b9ef 159 PIRSF PIRSF021700 1 159 3.5E-64 T 11-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase APT56_23920 0ddd4ab251256d78cd1e56cf11e6b9ef 159 SUPERFAMILY SSF54593 4 157 7.51E-48 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_04950 10ec0cd94d289c636653d89ce292e51d 375 Gene3D G3DSA:1.20.1250.20 5 363 7.0E-37 T 11-10-2018 APT56_04950 10ec0cd94d289c636653d89ce292e51d 375 PRINTS PR01035 Tetracycline resistance protein signature 28 47 8.3E-6 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_04950 10ec0cd94d289c636653d89ce292e51d 375 PRINTS PR01035 Tetracycline resistance protein signature 116 138 8.3E-6 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_04950 10ec0cd94d289c636653d89ce292e51d 375 PRINTS PR01035 Tetracycline resistance protein signature 230 250 8.3E-6 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_04950 10ec0cd94d289c636653d89ce292e51d 375 PRINTS PR01035 Tetracycline resistance protein signature 318 341 8.3E-6 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_04950 10ec0cd94d289c636653d89ce292e51d 375 SUPERFAMILY SSF103473 18 361 5.62E-40 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_04950 10ec0cd94d289c636653d89ce292e51d 375 Pfam PF07690 Major Facilitator Superfamily 18 327 4.9E-29 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_26215 6dbc01d748567bb4226f907075593331 235 SUPERFAMILY SSF46785 7 79 4.06E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26215 6dbc01d748567bb4226f907075593331 235 Pfam PF07729 FCD domain 101 223 2.8E-22 T 11-10-2018 IPR011711 GntR, C-terminal APT56_26215 6dbc01d748567bb4226f907075593331 235 SMART SM00345 16 75 2.1E-21 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26215 6dbc01d748567bb4226f907075593331 235 Gene3D G3DSA:1.20.120.530 93 235 3.5E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_26215 6dbc01d748567bb4226f907075593331 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 2.3E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26215 6dbc01d748567bb4226f907075593331 235 Gene3D G3DSA:1.10.10.10 8 78 8.3E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26215 6dbc01d748567bb4226f907075593331 235 SMART SM00895 99 225 3.7E-19 T 11-10-2018 IPR011711 GntR, C-terminal APT56_26215 6dbc01d748567bb4226f907075593331 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 2.7E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26215 6dbc01d748567bb4226f907075593331 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 2.7E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26215 6dbc01d748567bb4226f907075593331 235 SUPERFAMILY SSF48008 95 233 1.18E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_16995 551653ff7713506a6d78c3e4b25452f0 731 Gene3D G3DSA:2.40.170.20 192 731 7.1E-180 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_16995 551653ff7713506a6d78c3e4b25452f0 731 Pfam PF07715 TonB-dependent Receptor Plug Domain 80 179 1.8E-17 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_16995 551653ff7713506a6d78c3e4b25452f0 731 Gene3D G3DSA:2.170.130.10 57 189 5.5E-42 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_16995 551653ff7713506a6d78c3e4b25452f0 731 Pfam PF00593 TonB dependent receptor 285 730 3.1E-48 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_16995 551653ff7713506a6d78c3e4b25452f0 731 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 82 730 4.4E-110 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_16995 551653ff7713506a6d78c3e4b25452f0 731 SUPERFAMILY SSF56935 35 731 1.65E-123 T 11-10-2018 APT56_20060 4f229d02afedd32b17f5f56e8f190b9e 173 SMART SM00347 35 133 3.4E-13 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_20060 4f229d02afedd32b17f5f56e8f190b9e 173 SUPERFAMILY SSF46785 5 145 1.05E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20060 4f229d02afedd32b17f5f56e8f190b9e 173 Gene3D G3DSA:1.10.10.10 1 168 2.0E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20060 4f229d02afedd32b17f5f56e8f190b9e 173 Pfam PF01047 MarR family 40 98 9.3E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_20060 4f229d02afedd32b17f5f56e8f190b9e 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 89 1.4E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_20060 4f229d02afedd32b17f5f56e8f190b9e 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 57 73 1.4E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_20060 4f229d02afedd32b17f5f56e8f190b9e 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 109 1.4E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_20060 4f229d02afedd32b17f5f56e8f190b9e 173 PRINTS PR00598 Bacterial regulatory protein MarR family signature 123 143 1.4E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_03225 bb618dfc75dba59cc16ac39b614370f7 392 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 365 2.6E-64 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 APT56_03225 bb618dfc75dba59cc16ac39b614370f7 392 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 368 7.8E-89 T 11-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 APT56_21965 8f14e015e75775adc4dfac4fa471fa3b 317 Hamap MF_00492 Transaldolase [tal]. 2 316 47.643 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APT56_21965 8f14e015e75775adc4dfac4fa471fa3b 317 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 310 3.6E-94 T 11-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APT56_21965 8f14e015e75775adc4dfac4fa471fa3b 317 Gene3D G3DSA:3.20.20.70 1 317 5.3E-127 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_21965 8f14e015e75775adc4dfac4fa471fa3b 317 SUPERFAMILY SSF51569 1 314 3.14E-103 T 11-10-2018 APT56_21965 8f14e015e75775adc4dfac4fa471fa3b 317 TIGRFAM TIGR00874 talAB: transaldolase 3 314 2.4E-128 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APT56_21965 8f14e015e75775adc4dfac4fa471fa3b 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APT56_21965 8f14e015e75775adc4dfac4fa471fa3b 317 ProSitePatterns PS00958 Transaldolase active site. 123 140 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APT56_04275 a1a69bbab4b923a5b0ad00145a6971e3 92 Pfam PF02201 SWIB/MDM2 domain 19 91 1.3E-29 T 11-10-2018 IPR003121 SWIB/MDM2 domain GO:0005515 APT56_04275 a1a69bbab4b923a5b0ad00145a6971e3 92 SMART SM00151 17 92 9.5E-35 T 11-10-2018 IPR019835 SWIB domain Reactome: R-HSA-3214858|Reactome: R-HSA-8939243 APT56_04275 a1a69bbab4b923a5b0ad00145a6971e3 92 Gene3D G3DSA:1.10.245.10 11 92 1.1E-28 T 11-10-2018 IPR036885 SWIB/MDM2 domain superfamily APT56_04275 a1a69bbab4b923a5b0ad00145a6971e3 92 SUPERFAMILY SSF47592 12 91 2.62E-28 T 11-10-2018 IPR036885 SWIB/MDM2 domain superfamily APT56_12825 f5cea021358780027bf5ebee707c69e7 254 Pfam PF13353 4Fe-4S single cluster domain 51 126 8.0E-8 T 11-10-2018 APT56_12825 f5cea021358780027bf5ebee707c69e7 254 Pfam PF04055 Radical SAM superfamily 57 202 8.9E-16 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_12825 f5cea021358780027bf5ebee707c69e7 254 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 39 224 1.4E-54 T 11-10-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein APT56_12825 f5cea021358780027bf5ebee707c69e7 254 Gene3D G3DSA:3.20.20.70 37 225 1.2E-30 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_12825 f5cea021358780027bf5ebee707c69e7 254 SUPERFAMILY SSF102114 51 237 2.22E-25 T 11-10-2018 APT56_26950 ea314ad5a9409c0382639a38c4a688b6 154 PIRSF PIRSF000714 5 147 2.4E-35 T 11-10-2018 IPR026026 Histidine triad hydrolase, Hint-type APT56_26950 ea314ad5a9409c0382639a38c4a688b6 154 Gene3D G3DSA:3.30.428.10 13 149 8.1E-35 T 11-10-2018 IPR036265 HIT-like superfamily APT56_26950 ea314ad5a9409c0382639a38c4a688b6 154 Pfam PF01230 HIT domain 25 100 1.8E-11 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_26950 ea314ad5a9409c0382639a38c4a688b6 154 SUPERFAMILY SSF54197 5 137 1.7E-34 T 11-10-2018 IPR036265 HIT-like superfamily APT56_10820 6567f1d759d49fb6f1b948b7111dfed4 111 Pfam PF00085 Thioredoxin 5 98 7.6E-5 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 APT56_10820 6567f1d759d49fb6f1b948b7111dfed4 111 Gene3D G3DSA:3.40.30.10 1 100 3.8E-7 T 11-10-2018 APT56_10820 6567f1d759d49fb6f1b948b7111dfed4 111 SUPERFAMILY SSF52833 2 104 1.39E-15 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_22715 4dbecdb9007bd7da5bafffb7406275de 337 SUPERFAMILY SSF51679 1 326 1.83E-79 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_22715 4dbecdb9007bd7da5bafffb7406275de 337 Pfam PF00296 Luciferase-like monooxygenase 19 297 2.0E-57 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT56_22715 4dbecdb9007bd7da5bafffb7406275de 337 Gene3D G3DSA:3.20.20.30 1 327 7.8E-87 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_17680 776aef4ae7e98f7b99a59067406d6bf7 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.8E-23 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 APT56_17680 776aef4ae7e98f7b99a59067406d6bf7 107 SUPERFAMILY SSF89360 1 96 3.92E-31 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APT56_17680 776aef4ae7e98f7b99a59067406d6bf7 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 1.3E-51 T 11-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 APT56_17680 776aef4ae7e98f7b99a59067406d6bf7 107 Gene3D G3DSA:2.60.300.12 2 107 1.4E-37 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APT56_17680 776aef4ae7e98f7b99a59067406d6bf7 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 4.7E-36 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 APT56_17680 776aef4ae7e98f7b99a59067406d6bf7 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 APT56_10905 eb21b773c1f39b33b44c08a274c35b2f 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 310 1.5E-50 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_10905 eb21b773c1f39b33b44c08a274c35b2f 329 SUPERFAMILY SSF53850 106 292 1.38E-12 T 11-10-2018 APT56_10905 eb21b773c1f39b33b44c08a274c35b2f 329 Gene3D G3DSA:3.40.190.150 33 318 7.7E-87 T 11-10-2018 APT56_10905 eb21b773c1f39b33b44c08a274c35b2f 329 PIRSF PIRSF017082 1 329 5.3E-98 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_10905 eb21b773c1f39b33b44c08a274c35b2f 329 Gene3D G3DSA:3.40.190.10 131 254 7.7E-87 T 11-10-2018 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 195 261 8.2E-20 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 123 190 2.3E-24 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 PIRSF PIRSF005763 1 264 2.1E-98 T 11-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 Gene3D G3DSA:1.10.10.10 1 113 9.4E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21225 33eab65f77751f787ae4ccc42383682f 264 SUPERFAMILY SSF50331 123 191 3.16E-21 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_21225 33eab65f77751f787ae4ccc42383682f 264 Gene3D G3DSA:2.40.50.100 193 263 9.6E-26 T 11-10-2018 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 Gene3D G3DSA:2.40.50.100 121 192 5.6E-26 T 11-10-2018 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 SUPERFAMILY SSF46785 2 104 3.4E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21225 33eab65f77751f787ae4ccc42383682f 264 Pfam PF03459 TOBE domain 125 188 2.6E-17 T 11-10-2018 IPR005116 Transport-associated OB, type 1 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 Pfam PF03459 TOBE domain 198 260 3.7E-16 T 11-10-2018 IPR005116 Transport-associated OB, type 1 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 84 3.6E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21225 33eab65f77751f787ae4ccc42383682f 264 SUPERFAMILY SSF50331 195 262 2.67E-20 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 SUPERFAMILY SSF46689 5 84 1.25E-21 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 Gene3D G3DSA:1.10.357.10 63 202 2.3E-34 T 11-10-2018 APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 SUPERFAMILY SSF48498 83 199 2.52E-11 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 1.2E-19 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 Gene3D G3DSA:1.10.10.60 4 60 5.8E-28 T 11-10-2018 APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 147 201 1.7E-19 T 11-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 5.2E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_13895 cb8c1d609982306a8d1f7acca076db06 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 5.2E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Pfam PF04546 Sigma-70, non-essential region 289 489 1.9E-62 T 11-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 152 753 41.954 T 11-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Gene3D G3DSA:1.10.10.10 670 754 5.3E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_09590 a196a90728807bc9662d531d0a84a86e 755 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 516 752 1.8E-118 T 11-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 544 557 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Gene3D G3DSA:1.10.601.10 263 589 7.4E-125 T 11-10-2018 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Pfam PF00140 Sigma-70 factor, region 1.2 248 280 4.7E-14 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Pfam PF04539 Sigma-70 region 3 599 674 3.1E-24 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 SUPERFAMILY SSF88659 593 666 2.04E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Pfam PF03979 Sigma-70 factor, region 1.1 152 231 1.2E-28 T 11-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Pfam PF04545 Sigma-70, region 4 688 741 7.7E-19 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 516 741 3.3E-39 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Gene3D G3DSA:1.10.10.10 593 668 1.5E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Gene3D G3DSA:1.10.220.120 150 212 2.2E-27 T 11-10-2018 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 713 739 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 PRINTS PR00046 Major sigma-70 factor signature 713 728 7.7E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 PRINTS PR00046 Major sigma-70 factor signature 692 704 7.7E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 PRINTS PR00046 Major sigma-70 factor signature 568 576 7.7E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 PRINTS PR00046 Major sigma-70 factor signature 544 557 7.7E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 PRINTS PR00046 Major sigma-70 factor signature 728 739 7.7E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 SUPERFAMILY SSF88659 650 751 6.17E-27 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_09590 a196a90728807bc9662d531d0a84a86e 755 SUPERFAMILY SSF88946 265 587 1.19E-96 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_09590 a196a90728807bc9662d531d0a84a86e 755 Pfam PF04542 Sigma-70 region 2 522 589 8.5E-21 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_06375 2c3a2ff37a7b88edc6c993c30323b73e 148 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 34 119 6.6E-11 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 APT56_06375 2c3a2ff37a7b88edc6c993c30323b73e 148 SUPERFAMILY SSF54637 15 147 3.37E-24 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_06375 2c3a2ff37a7b88edc6c993c30323b73e 148 Pfam PF03061 Thioesterase superfamily 61 121 1.3E-8 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_06375 2c3a2ff37a7b88edc6c993c30323b73e 148 Gene3D G3DSA:3.10.129.10 19 148 1.0E-37 T 11-10-2018 APT56_07115 fc49fdad61abe13577ed58e88e570a44 171 Pfam PF06271 RDD family 12 157 9.4E-20 T 11-10-2018 IPR010432 RDD APT56_02495 eb5d22763c3f7b773e0f1faecfca5a27 337 SUPERFAMILY SSF53850 129 301 6.12E-16 T 11-10-2018 APT56_02495 eb5d22763c3f7b773e0f1faecfca5a27 337 Gene3D G3DSA:3.40.190.10 141 262 7.4E-99 T 11-10-2018 APT56_02495 eb5d22763c3f7b773e0f1faecfca5a27 337 PIRSF PIRSF017082 10 336 2.7E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02495 eb5d22763c3f7b773e0f1faecfca5a27 337 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 63 333 6.7E-66 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02495 eb5d22763c3f7b773e0f1faecfca5a27 337 Gene3D G3DSA:3.40.190.150 43 327 7.4E-99 T 11-10-2018 APT56_15790 c5c0c8a7bf1697b24597fc75a4bc7604 199 Gene3D G3DSA:2.30.130.40 1 114 1.5E-37 T 11-10-2018 APT56_15790 c5c0c8a7bf1697b24597fc75a4bc7604 199 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 3 193 1.1E-13 T 11-10-2018 IPR003111 Lon, substrate-binding domain APT56_15790 c5c0c8a7bf1697b24597fc75a4bc7604 199 Gene3D G3DSA:1.10.4060.10 115 199 2.1E-28 T 11-10-2018 APT56_15790 c5c0c8a7bf1697b24597fc75a4bc7604 199 SMART SM00464 3 199 3.8E-5 T 11-10-2018 IPR003111 Lon, substrate-binding domain APT56_15790 c5c0c8a7bf1697b24597fc75a4bc7604 199 SUPERFAMILY SSF88697 3 198 6.21E-45 T 11-10-2018 IPR015947 PUA-like superfamily APT56_04865 a948fee67a52cce5111d24a3dccee121 818 SUPERFAMILY SSF56935 52 816 4.88E-66 T 11-10-2018 APT56_04865 a948fee67a52cce5111d24a3dccee121 818 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 801 818 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_04865 a948fee67a52cce5111d24a3dccee121 818 Pfam PF00593 TonB dependent receptor 215 815 1.0E-32 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_04865 a948fee67a52cce5111d24a3dccee121 818 Gene3D G3DSA:2.40.170.20 204 818 8.0E-76 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_04865 a948fee67a52cce5111d24a3dccee121 818 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 174 2.1E-9 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_04865 a948fee67a52cce5111d24a3dccee121 818 Gene3D G3DSA:2.170.130.10 61 200 8.2E-15 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 SMART SM00382 66 237 3.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 ProSitePatterns PS00321 recA signature. 222 230 - T 11-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 12 333 8.3E-173 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 SUPERFAMILY SSF52540 12 276 2.38E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 SUPERFAMILY SSF54752 277 335 1.23E-21 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 Gene3D G3DSA:3.40.50.300 34 277 2.0E-84 T 11-10-2018 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 Pfam PF00154 recA bacterial DNA recombination protein 15 277 3.7E-145 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 Hamap MF_00268 Protein RecA [recA]. 13 338 51.746 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 Gene3D G3DSA:3.30.250.10 278 351 5.4E-27 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 PRINTS PR00142 RecA protein signature 219 247 5.0E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 PRINTS PR00142 RecA protein signature 306 323 5.0E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 PRINTS PR00142 RecA protein signature 252 281 5.0E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 PRINTS PR00142 RecA protein signature 102 131 5.0E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 PRINTS PR00142 RecA protein signature 174 203 5.0E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_08235 69bc5857ce126d15ec7a4cb79c3e4556 354 PRINTS PR00142 RecA protein signature 136 165 5.0E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APT56_04750 4231ccfaec6632dc9227df3c57154157 979 Pfam PF12951 Passenger-associated-transport-repeat 383 407 1.1E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_04750 4231ccfaec6632dc9227df3c57154157 979 Pfam PF12951 Passenger-associated-transport-repeat 476 506 1.0E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_04750 4231ccfaec6632dc9227df3c57154157 979 Pfam PF12951 Passenger-associated-transport-repeat 293 315 0.0021 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_04750 4231ccfaec6632dc9227df3c57154157 979 SUPERFAMILY SSF51126 337 460 4.39E-6 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_04750 4231ccfaec6632dc9227df3c57154157 979 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 475 507 4.2E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_04750 4231ccfaec6632dc9227df3c57154157 979 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 383 408 4.3E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_04750 4231ccfaec6632dc9227df3c57154157 979 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 546 979 2.8E-27 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_04750 4231ccfaec6632dc9227df3c57154157 979 SUPERFAMILY SSF51126 440 622 1.44E-16 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_04750 4231ccfaec6632dc9227df3c57154157 979 Pfam PF03797 Autotransporter beta-domain 712 958 8.4E-44 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_04750 4231ccfaec6632dc9227df3c57154157 979 Gene3D G3DSA:2.40.128.130 682 979 3.2E-50 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_04750 4231ccfaec6632dc9227df3c57154157 979 SMART SM00869 709 968 4.9E-29 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_04750 4231ccfaec6632dc9227df3c57154157 979 SUPERFAMILY SSF103515 680 979 1.83E-45 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_07260 0363b36fe731dbbdb500a646b703dc3f 177 SUPERFAMILY SSF88946 22 108 9.81E-14 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_07260 0363b36fe731dbbdb500a646b703dc3f 177 Pfam PF08281 Sigma-70, region 4 119 171 3.5E-17 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_07260 0363b36fe731dbbdb500a646b703dc3f 177 Gene3D G3DSA:1.10.1740.10 10 85 3.6E-11 T 11-10-2018 APT56_07260 0363b36fe731dbbdb500a646b703dc3f 177 Pfam PF04542 Sigma-70 region 2 23 86 9.1E-15 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_07260 0363b36fe731dbbdb500a646b703dc3f 177 SUPERFAMILY SSF88659 96 175 1.55E-16 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_07260 0363b36fe731dbbdb500a646b703dc3f 177 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 171 4.3E-22 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_07260 0363b36fe731dbbdb500a646b703dc3f 177 Gene3D G3DSA:1.10.10.10 100 176 2.6E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25415 91c3408f77ee6083043c3abfeb590d10 375 SUPERFAMILY SSF56349 59 350 1.74E-58 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT56_25415 91c3408f77ee6083043c3abfeb590d10 375 Gene3D G3DSA:1.10.443.10 173 355 1.0E-36 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APT56_25415 91c3408f77ee6083043c3abfeb590d10 375 Pfam PF00589 Phage integrase family 176 343 2.5E-32 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT56_25415 91c3408f77ee6083043c3abfeb590d10 375 Gene3D G3DSA:1.10.150.130 55 170 2.6E-10 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 Pfam PF13018 Extended Signal Peptide of Type V secretion system 2 23 1.1E-7 T 11-10-2018 IPR024973 ESPR domain APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 SUPERFAMILY SSF103515 810 1144 8.37E-63 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 Pfam PF03797 Autotransporter beta-domain 869 1123 3.1E-58 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 SUPERFAMILY SSF51126 421 724 1.13E-28 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 Pfam PF12951 Passenger-associated-transport-repeat 582 611 2.3E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 Pfam PF12951 Passenger-associated-transport-repeat 515 542 7.6E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 Pfam PF12951 Passenger-associated-transport-repeat 446 472 5.7E-6 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 SMART SM00869 866 1134 1.6E-42 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 Gene3D G3DSA:2.40.128.130 802 1144 2.4E-72 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 654 1144 2.2E-42 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 582 612 1.9E-10 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 516 543 2.6E-9 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_17450 6d5c77a08d024b29783f8ab21b216a7b 1144 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 442 473 1.2E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_24975 694d44e340e7274c5a7b2c1553998616 230 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 3 230 8.7E-101 T 11-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE APT56_24975 694d44e340e7274c5a7b2c1553998616 230 SUPERFAMILY SSF52540 3 219 3.24E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24975 694d44e340e7274c5a7b2c1553998616 230 Pfam PF00005 ABC transporter 18 159 2.3E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_24975 694d44e340e7274c5a7b2c1553998616 230 Gene3D G3DSA:3.40.50.300 1 230 3.0E-58 T 11-10-2018 APT56_24975 694d44e340e7274c5a7b2c1553998616 230 SMART SM00382 26 209 4.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23455 43f40ac5f092f456bb519a6888650017 190 Gene3D G3DSA:2.60.120.10 75 189 1.2E-7 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_23455 43f40ac5f092f456bb519a6888650017 190 Pfam PF13560 Helix-turn-helix domain 14 69 2.5E-14 T 11-10-2018 APT56_23455 43f40ac5f092f456bb519a6888650017 190 Gene3D G3DSA:1.10.260.40 1 74 1.8E-17 T 11-10-2018 APT56_23455 43f40ac5f092f456bb519a6888650017 190 SUPERFAMILY SSF47413 12 81 1.72E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_23455 43f40ac5f092f456bb519a6888650017 190 SUPERFAMILY SSF51182 68 189 1.86E-13 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_23455 43f40ac5f092f456bb519a6888650017 190 SMART SM00530 18 73 1.9E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_21295 3028b88ff875a4d113fc86fa343d4440 323 Gene3D G3DSA:3.40.50.2300 41 293 4.8E-92 T 11-10-2018 APT56_21295 3028b88ff875a4d113fc86fa343d4440 323 Gene3D G3DSA:3.40.50.2300 144 316 4.8E-92 T 11-10-2018 APT56_21295 3028b88ff875a4d113fc86fa343d4440 323 Pfam PF04392 ABC transporter substrate binding protein 30 321 2.1E-111 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein APT56_21295 3028b88ff875a4d113fc86fa343d4440 323 SUPERFAMILY SSF53822 35 284 7.38E-21 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_22790 294d11fa6f6dec31e1ad2ecd87b388bb 335 Gene3D G3DSA:3.20.20.100 1 315 4.1E-100 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_22790 294d11fa6f6dec31e1ad2ecd87b388bb 335 Pfam PF00248 Aldo/keto reductase family 5 309 2.7E-63 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_22790 294d11fa6f6dec31e1ad2ecd87b388bb 335 SUPERFAMILY SSF51430 3 309 1.83E-85 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_23825 22f63fd19e113c9d43d4f292cd470036 104 Pfam PF12840 Helix-turn-helix domain 5 63 5.5E-17 T 11-10-2018 APT56_23825 22f63fd19e113c9d43d4f292cd470036 104 SMART SM00418 5 83 1.8E-23 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_23825 22f63fd19e113c9d43d4f292cd470036 104 SUPERFAMILY SSF46785 5 95 2.47E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23825 22f63fd19e113c9d43d4f292cd470036 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 9.4E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_23825 22f63fd19e113c9d43d4f292cd470036 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 9.4E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_23825 22f63fd19e113c9d43d4f292cd470036 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 9.4E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_23825 22f63fd19e113c9d43d4f292cd470036 104 Gene3D G3DSA:1.10.10.10 3 104 7.2E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14860 5a403a5a41f0ac595fac7d98dd3cf9dc 454 SUPERFAMILY SSF103378 7 449 8.37E-121 T 11-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 APT56_14860 5a403a5a41f0ac595fac7d98dd3cf9dc 454 Pfam PF03972 MmgE/PrpD family 11 444 1.2E-133 T 11-10-2018 IPR005656 MmgE/PrpD GO:0016829 APT56_14860 5a403a5a41f0ac595fac7d98dd3cf9dc 454 Gene3D G3DSA:3.30.1330.120 272 403 2.4E-105 T 11-10-2018 APT56_14860 5a403a5a41f0ac595fac7d98dd3cf9dc 454 Gene3D G3DSA:1.10.4100.10 28 418 2.4E-105 T 11-10-2018 APT56_20150 8a6cba1eeabe08cd965a702e12733708 198 Gene3D G3DSA:3.40.50.720 1 198 8.1E-40 T 11-10-2018 APT56_20150 8a6cba1eeabe08cd965a702e12733708 198 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 2.9E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20150 8a6cba1eeabe08cd965a702e12733708 198 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 161 2.9E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20150 8a6cba1eeabe08cd965a702e12733708 198 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 144 2.9E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20150 8a6cba1eeabe08cd965a702e12733708 198 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 54 65 2.9E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20150 8a6cba1eeabe08cd965a702e12733708 198 SUPERFAMILY SSF51735 2 186 5.72E-25 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_20150 8a6cba1eeabe08cd965a702e12733708 198 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 32 177 5.0E-14 T 11-10-2018 APT56_05430 91d044d9832a8db987761af3fc5cb9d3 270 SUPERFAMILY SSF53218 9 218 3.14E-33 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily APT56_05430 91d044d9832a8db987761af3fc5cb9d3 270 SMART SM00852 11 184 1.6E-26 T 11-10-2018 IPR001453 MoaB/Mog domain APT56_05430 91d044d9832a8db987761af3fc5cb9d3 270 Pfam PF00994 Probable molybdopterin binding domain 12 177 9.2E-24 T 11-10-2018 IPR001453 MoaB/Mog domain APT56_05430 91d044d9832a8db987761af3fc5cb9d3 270 Gene3D G3DSA:3.40.980.10 7 180 6.5E-40 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 361 516 2.6E-42 T 11-10-2018 IPR000160 GGDEF domain APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 SMART SM00267 352 517 1.5E-51 T 11-10-2018 IPR000160 GGDEF domain APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 SUPERFAMILY SSF55073 368 516 3.84E-45 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 SUPERFAMILY SSF103190 191 264 1.1E-14 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 Pfam PF00990 Diguanylate cyclase, GGDEF domain 364 513 5.5E-40 T 11-10-2018 IPR000160 GGDEF domain APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 SUPERFAMILY SSF103190 80 176 3.92E-7 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 Gene3D G3DSA:3.30.450.20 34 177 2.9E-14 T 11-10-2018 APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 Pfam PF02743 Cache domain 50 265 5.8E-24 T 11-10-2018 IPR033479 Double Cache domain 1 APT56_14155 f2f7d3e7cca895fd8e35efe85d7d7be5 520 Gene3D G3DSA:3.30.70.270 358 519 1.4E-51 T 11-10-2018 APT56_26235 4582acde496abbde04a1eaa1a89aba20 263 Gene3D G3DSA:3.20.20.150 1 259 1.4E-79 T 11-10-2018 APT56_26235 4582acde496abbde04a1eaa1a89aba20 263 PIRSF PIRSF006241 1 260 7.1E-96 T 11-10-2018 IPR026040 Hydroxypyruvate isomerase-like APT56_26235 4582acde496abbde04a1eaa1a89aba20 263 SUPERFAMILY SSF51658 1 258 2.21E-84 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily APT56_26235 4582acde496abbde04a1eaa1a89aba20 263 Pfam PF01261 Xylose isomerase-like TIM barrel 21 218 4.5E-35 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain APT56_24325 e45390b24de05451245233ad41e1e2e5 236 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_24325 e45390b24de05451245233ad41e1e2e5 236 SUPERFAMILY SSF52540 4 227 2.48E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24325 e45390b24de05451245233ad41e1e2e5 236 Gene3D G3DSA:3.40.50.300 1 236 1.2E-59 T 11-10-2018 APT56_24325 e45390b24de05451245233ad41e1e2e5 236 SMART SM00382 29 213 6.1E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24325 e45390b24de05451245233ad41e1e2e5 236 Pfam PF00005 ABC transporter 22 164 4.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_03295 fb1ace016a7c59fe5bc324d8ee7b5ebb 153 Gene3D G3DSA:2.40.50.100 74 152 4.6E-33 T 11-10-2018 APT56_03295 fb1ace016a7c59fe5bc324d8ee7b5ebb 153 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 109 126 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_03295 fb1ace016a7c59fe5bc324d8ee7b5ebb 153 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 152 1.9E-53 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT56_03295 fb1ace016a7c59fe5bc324d8ee7b5ebb 153 SUPERFAMILY SSF51230 77 152 1.96E-25 T 11-10-2018 IPR011053 Single hybrid motif APT56_03295 fb1ace016a7c59fe5bc324d8ee7b5ebb 153 Pfam PF00364 Biotin-requiring enzyme 79 152 7.4E-25 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_03295 fb1ace016a7c59fe5bc324d8ee7b5ebb 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 82 95 2.4E-17 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT56_03295 fb1ace016a7c59fe5bc324d8ee7b5ebb 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 113 2.4E-17 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT56_03295 fb1ace016a7c59fe5bc324d8ee7b5ebb 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 114 127 2.4E-17 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 441 452 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 SUPERFAMILY SSF52833 6 86 8.95E-6 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 Gene3D G3DSA:3.40.50.11540 152 330 1.9E-71 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 266 281 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 SUPERFAMILY SSF142984 342 423 4.18E-19 T 11-10-2018 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 SUPERFAMILY SSF140490 425 511 1.22E-28 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 SUPERFAMILY SSF142019 99 339 1.57E-86 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 149 318 1.1E-44 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 Gene3D G3DSA:1.20.1440.230 426 521 8.3E-26 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 430 511 8.0E-30 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 Gene3D G3DSA:3.10.20.600 331 425 3.5E-21 T 11-10-2018 APT56_22910 a3679429ddeb8ccbcf54d04f59a2958f 523 SMART SM00928 428 474 9.4E-18 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 Gene3D G3DSA:3.40.50.300 337 589 8.7E-92 T 11-10-2018 APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 20 590 1.2E-262 T 11-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 Pfam PF00005 ABC transporter 368 517 4.9E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 SMART SM00382 376 549 6.4E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 SUPERFAMILY SSF52540 342 588 6.88E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 Gene3D G3DSA:1.20.1560.10 4 336 5.3E-72 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 SUPERFAMILY SSF90123 22 334 4.71E-70 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_09115 9a37ba14d2478b076bdc41d299bfe0eb 591 Pfam PF00664 ABC transporter transmembrane region 35 304 1.8E-42 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_12530 bf46b49720ccabdba64f8a59e0741b8a 400 Gene3D G3DSA:1.20.1250.20 3 374 1.6E-45 T 11-10-2018 APT56_12530 bf46b49720ccabdba64f8a59e0741b8a 400 Pfam PF07690 Major Facilitator Superfamily 9 339 7.3E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_12530 bf46b49720ccabdba64f8a59e0741b8a 400 SUPERFAMILY SSF103473 4 376 9.94E-53 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_11185 f555c710a553dd6d46e574e287ae9b81 269 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 8 250 1.2E-78 T 11-10-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 APT56_11185 f555c710a553dd6d46e574e287ae9b81 269 SUPERFAMILY SSF56112 32 250 2.19E-29 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_11185 f555c710a553dd6d46e574e287ae9b81 269 Gene3D G3DSA:3.90.1200.10 90 203 2.2E-7 T 11-10-2018 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 SUPERFAMILY SSF55021 265 359 1.12E-24 T 11-10-2018 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 Pfam PF01817 Chorismate mutase type II 13 91 1.5E-22 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 SMART SM00830 13 94 8.1E-30 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 308 315 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 PIRSF PIRSF001500 2 361 2.9E-141 T 11-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 SUPERFAMILY SSF48600 3 92 6.41E-20 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 SUPERFAMILY SSF53850 94 278 2.28E-58 T 11-10-2018 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 Gene3D G3DSA:3.30.70.260 275 361 3.0E-26 T 11-10-2018 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 Gene3D G3DSA:1.20.59.10 5 94 3.7E-26 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 Gene3D G3DSA:3.40.190.10 96 266 1.7E-57 T 11-10-2018 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 Gene3D G3DSA:3.40.190.10 176 259 1.7E-57 T 11-10-2018 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 Pfam PF00800 Prephenate dehydratase 96 270 5.1E-61 T 11-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT56_07545 4c162f4bc0ebe5fbba64f0c2dd451c4c 361 TIGRFAM TIGR01807 CM_P2: chorismate mutase 9 84 2.1E-26 T 11-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 APT56_23385 ca046bd9b995bb035f5198b8df81eec3 264 Pfam PF12833 Helix-turn-helix domain 183 260 9.8E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23385 ca046bd9b995bb035f5198b8df81eec3 264 Gene3D G3DSA:1.10.10.60 221 264 2.6E-10 T 11-10-2018 APT56_23385 ca046bd9b995bb035f5198b8df81eec3 264 Gene3D G3DSA:1.10.10.60 161 220 2.0E-14 T 11-10-2018 APT56_23385 ca046bd9b995bb035f5198b8df81eec3 264 SUPERFAMILY SSF51215 25 149 5.49E-14 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_23385 ca046bd9b995bb035f5198b8df81eec3 264 SUPERFAMILY SSF46689 163 211 3.95E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23385 ca046bd9b995bb035f5198b8df81eec3 264 SMART SM00342 177 259 1.2E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23385 ca046bd9b995bb035f5198b8df81eec3 264 SUPERFAMILY SSF46689 213 260 2.02E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23385 ca046bd9b995bb035f5198b8df81eec3 264 Pfam PF02311 AraC-like ligand binding domain 24 143 1.5E-17 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_10510 ce758dd5e4a8d913e0f8aad0078bb1a4 445 Pfam PF00535 Glycosyl transferase family 2 78 245 2.6E-34 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_10510 ce758dd5e4a8d913e0f8aad0078bb1a4 445 SUPERFAMILY SSF53448 68 338 2.41E-64 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_10510 ce758dd5e4a8d913e0f8aad0078bb1a4 445 Gene3D G3DSA:3.90.550.10 71 287 5.7E-45 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_10510 ce758dd5e4a8d913e0f8aad0078bb1a4 445 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 31 438 5.0E-193 T 11-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 APT56_08445 361ba2baa0de58a827f079bc4d51b302 409 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_08445 361ba2baa0de58a827f079bc4d51b302 409 SUPERFAMILY SSF54862 21 117 1.17E-19 T 11-10-2018 APT56_08445 361ba2baa0de58a827f079bc4d51b302 409 PIRSF PIRSF000139 9 409 3.3E-108 T 11-10-2018 APT56_08445 361ba2baa0de58a827f079bc4d51b302 409 Pfam PF13183 4Fe-4S dicluster domain 22 89 1.1E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_08445 361ba2baa0de58a827f079bc4d51b302 409 Gene3D G3DSA:1.10.1060.10 12 107 1.1E-8 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APT56_08445 361ba2baa0de58a827f079bc4d51b302 409 Pfam PF02754 Cysteine-rich domain 305 387 2.3E-10 T 11-10-2018 IPR004017 Cysteine-rich domain APT56_08445 361ba2baa0de58a827f079bc4d51b302 409 Pfam PF02754 Cysteine-rich domain 169 255 1.3E-8 T 11-10-2018 IPR004017 Cysteine-rich domain APT56_08325 c1b03199d88662d720cdf39e1e21602e 132 Pfam PF12973 ChrR Cupin-like domain 28 113 5.2E-18 T 11-10-2018 IPR025979 ChrR-like cupin domain APT56_08325 c1b03199d88662d720cdf39e1e21602e 132 SUPERFAMILY SSF51182 20 117 9.51E-28 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_08325 c1b03199d88662d720cdf39e1e21602e 132 Gene3D G3DSA:2.60.120.10 14 131 7.2E-26 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_19340 11b8deec1e1beb735a8494d30bd751b7 630 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 46 172 3.7E-25 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_19340 11b8deec1e1beb735a8494d30bd751b7 630 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 213 621 3.7E-96 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_19340 11b8deec1e1beb735a8494d30bd751b7 630 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 222 623 4.4E-86 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_23240 133ff036d781d4c9b462763d57be3fed 416 Pfam PF00266 Aminotransferase class-V 80 347 2.5E-12 T 11-10-2018 IPR000192 Aminotransferase class V domain APT56_23240 133ff036d781d4c9b462763d57be3fed 416 PIRSF PIRSF038800 1 407 3.2E-146 T 11-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 APT56_23240 133ff036d781d4c9b462763d57be3fed 416 Gene3D G3DSA:3.90.1150.10 11 399 1.4E-159 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_23240 133ff036d781d4c9b462763d57be3fed 416 Hamap MF_01970 Kynureninase [kynU]. 1 399 34.677 T 11-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 APT56_23240 133ff036d781d4c9b462763d57be3fed 416 SUPERFAMILY SSF53383 3 400 2.79E-86 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_23240 133ff036d781d4c9b462763d57be3fed 416 Gene3D G3DSA:3.40.640.10 41 303 1.4E-159 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_23240 133ff036d781d4c9b462763d57be3fed 416 TIGRFAM TIGR01814 kynureninase: kynureninase 9 400 1.4E-103 T 11-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 Gene3D G3DSA:1.25.40.10 22 236 4.3E-50 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 Pfam PF08238 Sel1 repeat 158 186 0.0086 T 11-10-2018 IPR006597 Sel1-like repeat APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 Pfam PF08238 Sel1 repeat 117 150 0.002 T 11-10-2018 IPR006597 Sel1-like repeat APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 Pfam PF08238 Sel1 repeat 79 112 1.0E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 Pfam PF08238 Sel1 repeat 49 77 6.8E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 SUPERFAMILY SSF81901 28 212 3.4E-42 T 11-10-2018 APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 SMART SM00671 151 186 0.025 T 11-10-2018 IPR006597 Sel1-like repeat APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 SMART SM00671 42 77 3.5E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 SMART SM00671 116 150 0.49 T 11-10-2018 IPR006597 Sel1-like repeat APT56_27265 b7ef414d10f589dea402b30e0ebc9ace 242 SMART SM00671 78 113 6.5E-7 T 11-10-2018 IPR006597 Sel1-like repeat APT56_20945 0147444fbffcd940f81adca928e794c2 375 Gene3D G3DSA:3.40.50.2000 1 168 1.9E-11 T 11-10-2018 APT56_20945 0147444fbffcd940f81adca928e794c2 375 Pfam PF00534 Glycosyl transferases group 1 177 338 1.4E-30 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_20945 0147444fbffcd940f81adca928e794c2 375 SUPERFAMILY SSF53756 10 368 1.36E-63 T 11-10-2018 APT56_20945 0147444fbffcd940f81adca928e794c2 375 Gene3D G3DSA:3.40.50.2000 169 349 1.2E-39 T 11-10-2018 APT56_20945 0147444fbffcd940f81adca928e794c2 375 Pfam PF13439 Glycosyltransferase Family 4 13 155 1.7E-14 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_15815 58f9b10c5a762c53fda029c8062d319f 386 SUPERFAMILY SSF53822 15 379 1.78E-88 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_15815 58f9b10c5a762c53fda029c8062d319f 386 Gene3D G3DSA:3.40.50.2300 129 365 7.0E-133 T 11-10-2018 APT56_15815 58f9b10c5a762c53fda029c8062d319f 386 Pfam PF13433 Periplasmic binding protein domain 14 376 1.3E-130 T 11-10-2018 APT56_15815 58f9b10c5a762c53fda029c8062d319f 386 Gene3D G3DSA:3.40.50.2300 16 346 7.0E-133 T 11-10-2018 APT56_09995 ad339731f01b1263ac444122ad637c57 591 Gene3D G3DSA:3.50.30.10 26 258 1.1E-67 T 11-10-2018 APT56_09995 ad339731f01b1263ac444122ad637c57 591 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 277 565 4.2E-105 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 APT56_09995 ad339731f01b1263ac444122ad637c57 591 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 209 220 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 APT56_09995 ad339731f01b1263ac444122ad637c57 591 Pfam PF05524 PEP-utilising enzyme, N-terminal 25 147 1.3E-25 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 APT56_09995 ad339731f01b1263ac444122ad637c57 591 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 318 337 1.5E-25 T 11-10-2018 APT56_09995 ad339731f01b1263ac444122ad637c57 591 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 486 1.5E-25 T 11-10-2018 APT56_09995 ad339731f01b1263ac444122ad637c57 591 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 524 536 1.5E-25 T 11-10-2018 APT56_09995 ad339731f01b1263ac444122ad637c57 591 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 488 503 1.5E-25 T 11-10-2018 APT56_09995 ad339731f01b1263ac444122ad637c57 591 Pfam PF00391 PEP-utilising enzyme, mobile domain 178 250 1.0E-20 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT56_09995 ad339731f01b1263ac444122ad637c57 591 SUPERFAMILY SSF52009 146 271 5.1E-31 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 APT56_09995 ad339731f01b1263ac444122ad637c57 591 Gene3D G3DSA:3.20.20.60 259 586 2.8E-110 T 11-10-2018 APT56_09995 ad339731f01b1263ac444122ad637c57 591 PIRSF PIRSF000732 20 586 4.4E-199 T 11-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 APT56_09995 ad339731f01b1263ac444122ad637c57 591 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 23 576 4.1E-154 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 APT56_09995 ad339731f01b1263ac444122ad637c57 591 SUPERFAMILY SSF51621 276 569 1.6E-99 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_09995 ad339731f01b1263ac444122ad637c57 591 SUPERFAMILY SSF47831 45 164 8.37E-30 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 APT56_09995 ad339731f01b1263ac444122ad637c57 591 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 471 489 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 APT56_09995 ad339731f01b1263ac444122ad637c57 591 Gene3D G3DSA:1.10.274.10 42 167 1.1E-67 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 APT56_24390 62d5877d9f3f6b88d573a216f8c18618 335 Gene3D G3DSA:3.40.190.10 68 283 3.2E-54 T 11-10-2018 APT56_24390 62d5877d9f3f6b88d573a216f8c18618 335 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 27 282 4.8E-64 T 11-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 APT56_24390 62d5877d9f3f6b88d573a216f8c18618 335 SUPERFAMILY SSF53850 76 315 5.96E-50 T 11-10-2018 APT56_24390 62d5877d9f3f6b88d573a216f8c18618 335 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 67 302 2.0E-55 T 11-10-2018 APT56_24390 62d5877d9f3f6b88d573a216f8c18618 335 Gene3D G3DSA:3.40.190.10 150 257 3.2E-54 T 11-10-2018 APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 Gene3D G3DSA:3.40.190.10 168 271 5.2E-43 T 11-10-2018 APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.0E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 Pfam PF03466 LysR substrate binding domain 92 297 8.7E-43 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 Gene3D G3DSA:1.10.10.10 1 87 2.6E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 SUPERFAMILY SSF53850 94 300 9.91E-44 T 11-10-2018 APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 Gene3D G3DSA:3.40.190.10 95 285 5.2E-43 T 11-10-2018 APT56_11090 8df29ee95283fa430937f88daa2f9d9f 302 SUPERFAMILY SSF46785 7 89 1.24E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_09560 51834aa367be8dfa83dbcb2621f0b3b2 300 Gene3D G3DSA:3.30.479.30 51 187 1.1E-17 T 11-10-2018 APT56_09560 51834aa367be8dfa83dbcb2621f0b3b2 300 Pfam PF01145 SPFH domain / Band 7 family 24 196 1.2E-24 T 11-10-2018 IPR001107 Band 7 domain APT56_09560 51834aa367be8dfa83dbcb2621f0b3b2 300 SMART SM00244 20 185 2.4E-27 T 11-10-2018 IPR001107 Band 7 domain APT56_09560 51834aa367be8dfa83dbcb2621f0b3b2 300 TIGRFAM TIGR01932 hflC: HflC protein 148 285 2.0E-45 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 APT56_09560 51834aa367be8dfa83dbcb2621f0b3b2 300 PIRSF PIRSF005651 1 293 5.7E-87 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 APT56_09560 51834aa367be8dfa83dbcb2621f0b3b2 300 SUPERFAMILY SSF117892 54 191 1.31E-24 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 ProSitePatterns PS00380 Rhodanese signature 1. 39 50 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 SMART SM00450 157 277 2.7E-8 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 SMART SM00450 6 132 1.9E-23 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 SUPERFAMILY SSF52821 2 141 9.56E-44 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 Gene3D G3DSA:3.40.250.10 2 144 7.6E-48 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 SUPERFAMILY SSF52821 160 282 2.88E-31 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 Gene3D G3DSA:3.40.250.10 160 282 2.3E-31 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 Pfam PF00581 Rhodanese-like domain 159 273 2.8E-7 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_07995 84d7c162a31f2be2567f35a6dab4002d 283 Pfam PF00581 Rhodanese-like domain 7 129 6.1E-18 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00655 1f951f8f1a3d53d443529acc6b4f29d0 152 Pfam PF04361 Protein of unknown function (DUF494) 1 152 3.1E-51 T 11-10-2018 IPR007456 Smg APT56_00655 1f951f8f1a3d53d443529acc6b4f29d0 152 Hamap MF_00598 Protein Smg [smg]. 1 152 26.861 T 11-10-2018 IPR007456 Smg APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 7 463 3.1E-164 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 Pfam PF01225 Mur ligase family, catalytic domain 7 105 9.9E-25 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 405 1.1E-19 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 Gene3D G3DSA:3.40.1190.10 94 311 3.4E-76 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 SUPERFAMILY SSF51984 6 92 1.83E-27 T 11-10-2018 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 Gene3D G3DSA:3.40.50.720 6 92 4.3E-29 T 11-10-2018 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 Pfam PF08245 Mur ligase middle domain 110 294 2.3E-26 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 SUPERFAMILY SSF53244 313 460 1.08E-45 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 5 468 42.015 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 SUPERFAMILY SSF53623 91 312 5.89E-69 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_04345 dc183c344e07f20f77899ea19ffc6d76 468 Gene3D G3DSA:3.90.190.20 312 466 1.2E-43 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 SUPERFAMILY SSF102114 117 367 7.19E-54 T 11-10-2018 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 Gene3D G3DSA:3.80.30.20 135 376 2.2E-73 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APT56_26475 01049ba002d58b814f823a1167ba3d14 438 Pfam PF04055 Radical SAM superfamily 143 319 2.3E-28 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 Pfam PF00919 Uncharacterized protein family UPF0004 5 83 6.6E-21 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 Gene3D G3DSA:2.40.50.140 377 438 1.6E-21 T 11-10-2018 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 SMART SM00729 137 362 9.5E-54 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 Gene3D G3DSA:3.40.50.12160 5 125 3.6E-29 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily APT56_26475 01049ba002d58b814f823a1167ba3d14 438 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 5 434 2.1E-183 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 4 437 62.615 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 APT56_26475 01049ba002d58b814f823a1167ba3d14 438 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 435 2.2E-104 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 APT56_13330 cfa27ca4012d496184547aac5bc68075 357 Pfam PF03060 Nitronate monooxygenase 8 338 1.2E-73 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APT56_13330 cfa27ca4012d496184547aac5bc68075 357 Gene3D G3DSA:3.20.20.70 2 347 3.8E-100 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_13330 cfa27ca4012d496184547aac5bc68075 357 SUPERFAMILY SSF51412 8 329 2.93E-57 T 11-10-2018 APT56_05220 a3cd765ba7d45c7369bd714e790c2475 243 Gene3D G3DSA:3.30.450.40 168 241 1.1E-11 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_05220 a3cd765ba7d45c7369bd714e790c2475 243 Gene3D G3DSA:1.10.10.10 5 80 6.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05220 a3cd765ba7d45c7369bd714e790c2475 243 Pfam PF09339 IclR helix-turn-helix domain 22 71 4.7E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_05220 a3cd765ba7d45c7369bd714e790c2475 243 SUPERFAMILY SSF55781 90 235 2.75E-27 T 11-10-2018 APT56_05220 a3cd765ba7d45c7369bd714e790c2475 243 SMART SM00346 20 109 1.3E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_05220 a3cd765ba7d45c7369bd714e790c2475 243 Gene3D G3DSA:3.30.450.40 87 167 2.9E-17 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_05220 a3cd765ba7d45c7369bd714e790c2475 243 Pfam PF01614 Bacterial transcriptional regulator 170 232 5.3E-7 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_05220 a3cd765ba7d45c7369bd714e790c2475 243 SUPERFAMILY SSF46785 22 92 5.92E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23585 201a26521964f1d388cd21815254d3ae 261 Pfam PF12833 Helix-turn-helix domain 183 257 1.4E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23585 201a26521964f1d388cd21815254d3ae 261 Gene3D G3DSA:1.10.10.60 157 261 3.5E-19 T 11-10-2018 APT56_23585 201a26521964f1d388cd21815254d3ae 261 SUPERFAMILY SSF51182 3 183 4.45E-14 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_23585 201a26521964f1d388cd21815254d3ae 261 Gene3D G3DSA:2.60.120.10 3 97 9.6E-7 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_23585 201a26521964f1d388cd21815254d3ae 261 SUPERFAMILY SSF46689 214 256 6.45E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23585 201a26521964f1d388cd21815254d3ae 261 SMART SM00342 175 257 9.1E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_24530 8bbbdeef4d9e659eea44042fb84b2323 317 SMART SM00849 33 220 3.2E-13 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_24530 8bbbdeef4d9e659eea44042fb84b2323 317 Pfam PF00753 Metallo-beta-lactamase superfamily 33 219 1.5E-10 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_24530 8bbbdeef4d9e659eea44042fb84b2323 317 SUPERFAMILY SSF56281 14 309 1.26E-57 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_24530 8bbbdeef4d9e659eea44042fb84b2323 317 Gene3D G3DSA:3.60.15.10 11 236 1.6E-44 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_09370 e0896d2dc165ff02a36f2d50f0485e47 446 Pfam PF00202 Aminotransferase class-III 16 436 2.0E-105 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_09370 e0896d2dc165ff02a36f2d50f0485e47 446 SUPERFAMILY SSF53383 9 438 1.15E-127 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_09370 e0896d2dc165ff02a36f2d50f0485e47 446 Gene3D G3DSA:3.40.640.10 50 328 3.2E-159 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_09370 e0896d2dc165ff02a36f2d50f0485e47 446 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 276 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_09370 e0896d2dc165ff02a36f2d50f0485e47 446 PIRSF PIRSF000521 18 438 1.3E-36 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_09370 e0896d2dc165ff02a36f2d50f0485e47 446 Gene3D G3DSA:3.90.1150.10 16 437 3.2E-159 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_15715 aec3e262f78142481a80063226c3ec80 420 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 274 295 1.8E-12 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_15715 aec3e262f78142481a80063226c3ec80 420 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 403 420 1.8E-12 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_15715 aec3e262f78142481a80063226c3ec80 420 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 331 1.8E-12 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_15715 aec3e262f78142481a80063226c3ec80 420 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 78 98 1.8E-12 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_15715 aec3e262f78142481a80063226c3ec80 420 SUPERFAMILY SSF111369 68 117 5.62E-5 T 11-10-2018 APT56_15715 aec3e262f78142481a80063226c3ec80 420 Pfam PF13437 HlyD family secretion protein 263 386 3.6E-10 T 11-10-2018 APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 SUPERFAMILY SSF56935 153 867 9.16E-96 T 11-10-2018 APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 147 868 8.1E-162 T 11-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 Pfam PF07715 TonB-dependent Receptor Plug Domain 161 255 5.0E-10 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 SMART SM00965 81 132 3.5E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 Gene3D G3DSA:2.40.170.20 272 868 4.0E-108 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 Gene3D G3DSA:2.170.130.10 152 271 2.4E-15 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 Gene3D G3DSA:3.55.50.30 51 151 3.9E-24 T 11-10-2018 APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 184 868 2.7E-169 T 11-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 APT56_23165 2c4873b519978ffd5d3c9d8c9efa66de 868 Pfam PF00593 TonB dependent receptor 383 867 2.5E-61 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_08830 1a3bde20861ddf9397008543f7c576bc 367 Gene3D G3DSA:2.40.30.170 48 267 6.3E-63 T 11-10-2018 APT56_08830 1a3bde20861ddf9397008543f7c576bc 367 Gene3D G3DSA:1.10.287.470 89 162 6.3E-63 T 11-10-2018 APT56_08830 1a3bde20861ddf9397008543f7c576bc 367 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 30 358 3.9E-78 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_08830 1a3bde20861ddf9397008543f7c576bc 367 SUPERFAMILY SSF111369 47 282 3.27E-57 T 11-10-2018 APT56_08830 1a3bde20861ddf9397008543f7c576bc 367 Gene3D G3DSA:2.40.420.20 268 359 7.6E-24 T 11-10-2018 APT56_08830 1a3bde20861ddf9397008543f7c576bc 367 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 277 2.6E-14 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_08830 1a3bde20861ddf9397008543f7c576bc 367 Gene3D G3DSA:2.40.50.100 54 198 6.3E-63 T 11-10-2018 APT56_26190 84bdc325988f7fce234b40a26dfff221 261 Gene3D G3DSA:3.20.20.150 1 260 1.2E-72 T 11-10-2018 APT56_26190 84bdc325988f7fce234b40a26dfff221 261 SUPERFAMILY SSF51658 1 258 4.58E-77 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily APT56_26190 84bdc325988f7fce234b40a26dfff221 261 Pfam PF01261 Xylose isomerase-like TIM barrel 22 219 9.4E-28 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain APT56_26190 84bdc325988f7fce234b40a26dfff221 261 PIRSF PIRSF006241 1 261 5.5E-94 T 11-10-2018 IPR026040 Hydroxypyruvate isomerase-like APT56_22090 38d917feb29f94a007a0aad6415582c4 540 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_22090 38d917feb29f94a007a0aad6415582c4 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 442 512 2.2E-17 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_22090 38d917feb29f94a007a0aad6415582c4 540 Pfam PF00501 AMP-binding enzyme 12 433 1.1E-95 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_22090 38d917feb29f94a007a0aad6415582c4 540 SUPERFAMILY SSF56801 6 532 3.4E-142 T 11-10-2018 APT56_22090 38d917feb29f94a007a0aad6415582c4 540 Gene3D G3DSA:3.40.50.12780 4 429 1.0E-106 T 11-10-2018 APT56_22090 38d917feb29f94a007a0aad6415582c4 540 Gene3D G3DSA:3.30.300.310 430 533 8.5E-29 T 11-10-2018 APT56_10320 4b4f1aea4b5057df7199bb0b7b0d61dc 101 Pfam PF07978 NIPSNAP 6 99 5.0E-26 T 11-10-2018 IPR012577 NIPSNAP APT56_10320 4b4f1aea4b5057df7199bb0b7b0d61dc 101 SUPERFAMILY SSF54909 1 99 5.37E-23 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_10320 4b4f1aea4b5057df7199bb0b7b0d61dc 101 Gene3D G3DSA:3.30.70.100 6 95 4.9E-7 T 11-10-2018 APT56_15700 34928f0824d410b46e270bff939eb364 398 Gene3D G3DSA:3.90.1150.10 24 388 2.1E-127 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_15700 34928f0824d410b46e270bff939eb364 398 Gene3D G3DSA:3.40.640.10 61 284 2.1E-127 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_15700 34928f0824d410b46e270bff939eb364 398 Pfam PF00155 Aminotransferase class I and II 30 389 1.1E-67 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_15700 34928f0824d410b46e270bff939eb364 398 SUPERFAMILY SSF53383 2 396 1.5E-106 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_15700 34928f0824d410b46e270bff939eb364 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 Gene3D G3DSA:1.10.580.10 88 382 2.0E-43 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 SUPERFAMILY SSF48256 32 400 1.31E-70 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 Pfam PF00285 Citrate synthase, C-terminal domain 71 392 2.6E-58 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 PRINTS PR00143 Citrate synthase signature 362 376 2.5E-11 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 PRINTS PR00143 Citrate synthase signature 234 262 2.5E-11 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 PRINTS PR00143 Citrate synthase signature 342 358 2.5E-11 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 PRINTS PR00143 Citrate synthase signature 212 227 2.5E-11 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 Gene3D G3DSA:1.10.230.10 260 356 2.0E-43 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 Pfam PF12728 Helix-turn-helix domain 4 55 1.8E-6 T 11-10-2018 APT56_16040 bb40db859d13c708c5f14078f64f0c6b 403 Gene3D G3DSA:1.10.1660.10 1 55 1.6E-5 T 11-10-2018 APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 Gene3D G3DSA:3.30.750.70 71 131 2.4E-5 T 11-10-2018 APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 SMART SM01134 73 234 2.3E-73 T 11-10-2018 APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 Pfam PF00455 DeoR C terminal sensor domain 75 232 1.2E-53 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 SUPERFAMILY SSF100950 77 234 1.1E-26 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 Gene3D G3DSA:1.10.10.10 1 69 9.7E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 8.1E-18 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 SUPERFAMILY SSF46785 3 59 5.12E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 SMART SM00420 6 58 1.0E-18 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.5E-9 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT56_15445 e60c85e18e9636951ad9da3aa54f63d3 263 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.5E-9 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APT56_01315 6ca02e00fbb41560409902941fbda9c0 80 SUPERFAMILY SSF51230 4 79 1.96E-21 T 11-10-2018 IPR011053 Single hybrid motif APT56_01315 6ca02e00fbb41560409902941fbda9c0 80 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 40 53 2.3E-13 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT56_01315 6ca02e00fbb41560409902941fbda9c0 80 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 8 21 2.3E-13 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT56_01315 6ca02e00fbb41560409902941fbda9c0 80 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 25 39 2.3E-13 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APT56_01315 6ca02e00fbb41560409902941fbda9c0 80 Pfam PF00364 Biotin-requiring enzyme 5 78 1.9E-17 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_01315 6ca02e00fbb41560409902941fbda9c0 80 Gene3D G3DSA:2.40.50.100 1 79 2.1E-26 T 11-10-2018 APT56_18070 bf2ddce1af6264e7e77739a3436a94fc 303 Gene3D G3DSA:3.40.190.10 58 281 5.9E-69 T 11-10-2018 APT56_18070 bf2ddce1af6264e7e77739a3436a94fc 303 SUPERFAMILY SSF53850 10 281 5.43E-40 T 11-10-2018 APT56_18070 bf2ddce1af6264e7e77739a3436a94fc 303 SMART SM00062 51 287 1.6E-39 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_18070 bf2ddce1af6264e7e77739a3436a94fc 303 TIGRFAM TIGR02995 ectoine_ehuB: ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB 33 300 3.6E-92 T 11-10-2018 IPR014337 Ectoine/Hydroxyectoine ABC transporter, substrate-binding protein EhuB GO:0033294|GO:0051470 APT56_18070 bf2ddce1af6264e7e77739a3436a94fc 303 Gene3D G3DSA:3.40.190.10 138 245 5.9E-69 T 11-10-2018 APT56_18070 bf2ddce1af6264e7e77739a3436a94fc 303 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 52 281 3.7E-40 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_07830 5a179b9a159202e5600bdc0d25f63e13 151 Gene3D G3DSA:3.10.50.40 25 148 4.2E-35 T 11-10-2018 APT56_07830 5a179b9a159202e5600bdc0d25f63e13 151 SUPERFAMILY SSF54534 5 150 7.46E-29 T 11-10-2018 APT56_07830 5a179b9a159202e5600bdc0d25f63e13 151 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 8 79 8.6E-9 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain APT56_07830 5a179b9a159202e5600bdc0d25f63e13 151 Gene3D G3DSA:2.40.10.330 76 136 4.2E-35 T 11-10-2018 APT56_15205 c6732bf2b1d61c1ab6bb7bcd42218f7b 124 SUPERFAMILY SSF52833 2 105 3.72E-32 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_15205 c6732bf2b1d61c1ab6bb7bcd42218f7b 124 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APT56_15205 c6732bf2b1d61c1ab6bb7bcd42218f7b 124 Gene3D G3DSA:3.40.30.10 1 123 2.1E-29 T 11-10-2018 APT56_15205 c6732bf2b1d61c1ab6bb7bcd42218f7b 124 PRINTS PR00421 Thioredoxin family signature 68 79 4.7E-9 T 11-10-2018 APT56_15205 c6732bf2b1d61c1ab6bb7bcd42218f7b 124 PRINTS PR00421 Thioredoxin family signature 29 38 4.7E-9 T 11-10-2018 APT56_15205 c6732bf2b1d61c1ab6bb7bcd42218f7b 124 PRINTS PR00421 Thioredoxin family signature 21 29 4.7E-9 T 11-10-2018 APT56_15205 c6732bf2b1d61c1ab6bb7bcd42218f7b 124 PIRSF PIRSF000077 1 104 2.5E-27 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT56_15205 c6732bf2b1d61c1ab6bb7bcd42218f7b 124 Pfam PF00085 Thioredoxin 3 100 1.7E-25 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 Pfam PF03466 LysR substrate binding domain 87 292 1.1E-23 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 SUPERFAMILY SSF53850 88 294 1.45E-27 T 11-10-2018 APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 Gene3D G3DSA:1.10.10.10 1 88 5.6E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 Gene3D G3DSA:3.40.190.10 99 283 6.2E-47 T 11-10-2018 APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 SUPERFAMILY SSF46785 1 103 1.04E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 Gene3D G3DSA:3.40.190.10 164 265 6.2E-47 T 11-10-2018 APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26210 8dfa72e874bfbadaa971b99da554034f 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_12630 6c264a160f50f89e41675d353e5dd285 300 Gene3D G3DSA:1.10.3720.10 86 291 2.7E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12630 6c264a160f50f89e41675d353e5dd285 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 294 6.3E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12630 6c264a160f50f89e41675d353e5dd285 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 66 1.3E-7 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_12630 6c264a160f50f89e41675d353e5dd285 300 SUPERFAMILY SSF161098 90 276 5.49E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07110 b6f6c8c516e4a9b3c0fd27506b16dfc4 302 Pfam PF09935 Protein of unknown function (DUF2167) 47 281 1.8E-80 T 11-10-2018 IPR018682 Protein of unknown function DUF2167, membrane APT56_04060 fe543a717341bdbacc1a27e2cd98a9ee 299 SUPERFAMILY SSF103481 188 285 4.45E-10 T 11-10-2018 APT56_04060 fe543a717341bdbacc1a27e2cd98a9ee 299 Pfam PF00892 EamA-like transporter family 148 283 1.2E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_04060 fe543a717341bdbacc1a27e2cd98a9ee 299 Pfam PF00892 EamA-like transporter family 2 133 7.3E-19 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_04060 fe543a717341bdbacc1a27e2cd98a9ee 299 SUPERFAMILY SSF103481 33 135 7.06E-13 T 11-10-2018 APT56_25885 beb67f24dfb7a281ac36189cec86afe6 293 Gene3D G3DSA:3.40.190.10 164 264 4.0E-64 T 11-10-2018 APT56_25885 beb67f24dfb7a281ac36189cec86afe6 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 6.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25885 beb67f24dfb7a281ac36189cec86afe6 293 SUPERFAMILY SSF53850 89 292 5.43E-40 T 11-10-2018 APT56_25885 beb67f24dfb7a281ac36189cec86afe6 293 SUPERFAMILY SSF46785 2 113 2.26E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25885 beb67f24dfb7a281ac36189cec86afe6 293 Gene3D G3DSA:3.40.190.10 93 289 4.0E-64 T 11-10-2018 APT56_25885 beb67f24dfb7a281ac36189cec86afe6 293 Pfam PF03466 LysR substrate binding domain 89 292 3.0E-42 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_25885 beb67f24dfb7a281ac36189cec86afe6 293 Gene3D G3DSA:1.10.10.10 1 87 1.2E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08295 3c8debe319361ed3bbd6413b910bcd0c 397 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 39 386 6.3E-44 T 11-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 6.9E-31 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 SMART SM00357 4 68 7.8E-32 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 PIRSF PIRSF002599 1 68 1.1E-26 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 Gene3D G3DSA:2.40.50.140 2 66 2.3E-30 T 11-10-2018 APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 PRINTS PR00050 Cold shock protein signature 41 59 2.6E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 PRINTS PR00050 Cold shock protein signature 5 20 2.6E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 PRINTS PR00050 Cold shock protein signature 26 35 2.6E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 SUPERFAMILY SSF50249 3 67 4.5E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_00165 c71c025a07cc3184c414d4caff2e4d4e 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 35 - T 11-10-2018 IPR019844 Cold-shock conserved site APT56_03265 76fa021282825f4c5c93e5c8ef480bb1 223 SUPERFAMILY SSF52172 1 162 8.4E-38 T 11-10-2018 IPR011006 CheY-like superfamily APT56_03265 76fa021282825f4c5c93e5c8ef480bb1 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.2E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_03265 76fa021282825f4c5c93e5c8ef480bb1 223 Pfam PF00072 Response regulator receiver domain 3 112 3.1E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_03265 76fa021282825f4c5c93e5c8ef480bb1 223 SMART SM00862 145 217 2.2E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_03265 76fa021282825f4c5c93e5c8ef480bb1 223 SMART SM00448 1 112 1.6E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_03265 76fa021282825f4c5c93e5c8ef480bb1 223 Gene3D G3DSA:3.40.50.2300 1 121 2.4E-34 T 11-10-2018 APT56_03265 76fa021282825f4c5c93e5c8ef480bb1 223 Gene3D G3DSA:1.10.10.10 122 222 1.4E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02155 cf4006087a82c17e662058977fa39787 80 SUPERFAMILY SSF81333 4 77 4.71E-18 T 11-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily APT56_02155 cf4006087a82c17e662058977fa39787 80 Gene3D G3DSA:1.20.20.10 1 76 1.9E-27 T 11-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02155 cf4006087a82c17e662058977fa39787 80 Pfam PF00137 ATP synthase subunit C 9 71 2.9E-10 T 11-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 APT56_02155 cf4006087a82c17e662058977fa39787 80 Hamap MF_01396 ATP synthase subunit c [atpH]. 8 73 14.112 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02155 cf4006087a82c17e662058977fa39787 80 ProSitePatterns PS00605 ATP synthase c subunit signature. 38 59 - T 11-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02155 cf4006087a82c17e662058977fa39787 80 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 19 75 7.9E-22 T 11-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APT56_02155 cf4006087a82c17e662058977fa39787 80 PRINTS PR00124 ATP synthase C subunit signature 10 29 8.9E-5 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02155 cf4006087a82c17e662058977fa39787 80 PRINTS PR00124 ATP synthase C subunit signature 31 46 8.9E-5 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02155 cf4006087a82c17e662058977fa39787 80 PRINTS PR00124 ATP synthase C subunit signature 48 73 8.9E-5 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_27330 96c210109ddd117d47f1fd35b1e1a19b 347 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 4 344 6.2E-122 T 11-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 APT56_27330 96c210109ddd117d47f1fd35b1e1a19b 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 78 335 3.2E-73 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APT56_27330 96c210109ddd117d47f1fd35b1e1a19b 347 SUPERFAMILY SSF53756 4 343 1.55E-64 T 11-10-2018 APT56_27330 96c210109ddd117d47f1fd35b1e1a19b 347 Gene3D G3DSA:3.40.50.2000 3 162 6.7E-56 T 11-10-2018 APT56_27330 96c210109ddd117d47f1fd35b1e1a19b 347 Gene3D G3DSA:3.40.50.2000 196 346 9.8E-37 T 11-10-2018 APT56_09410 0c398ec4b21f9c82a50b52886a7132bf 105 SUPERFAMILY SSF103481 5 104 3.79E-20 T 11-10-2018 APT56_09410 0c398ec4b21f9c82a50b52886a7132bf 105 Gene3D G3DSA:1.10.3730.20 1 105 1.0E-31 T 11-10-2018 APT56_09410 0c398ec4b21f9c82a50b52886a7132bf 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 4.2E-32 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 APT56_22115 359c573c50188d70329982e2a011b44a 342 Pfam PF00107 Zinc-binding dehydrogenase 179 304 8.9E-30 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_22115 359c573c50188d70329982e2a011b44a 342 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT56_22115 359c573c50188d70329982e2a011b44a 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 134 8.7E-34 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_22115 359c573c50188d70329982e2a011b44a 342 Gene3D G3DSA:3.90.180.10 17 335 6.6E-137 T 11-10-2018 APT56_22115 359c573c50188d70329982e2a011b44a 342 Gene3D G3DSA:3.40.50.720 152 289 6.6E-137 T 11-10-2018 APT56_22115 359c573c50188d70329982e2a011b44a 342 SMART SM00829 14 338 8.6E-7 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_22115 359c573c50188d70329982e2a011b44a 342 SUPERFAMILY SSF51735 143 308 8.0E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_22115 359c573c50188d70329982e2a011b44a 342 SUPERFAMILY SSF50129 3 338 6.85E-57 T 11-10-2018 IPR011032 GroES-like superfamily APT56_20580 6b59f7ceb21de86cb4a6f3dbb01074cd 263 Pfam PF01925 Sulfite exporter TauE/SafE 5 258 2.4E-40 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_06430 e71523aba25acc9cc1815e46bff980ed 162 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 19 140 7.3E-46 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06430 e71523aba25acc9cc1815e46bff980ed 162 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 159 27.503 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06430 e71523aba25acc9cc1815e46bff980ed 162 Pfam PF12838 4Fe-4S dicluster domain 62 115 5.1E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_06430 e71523aba25acc9cc1815e46bff980ed 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_06430 e71523aba25acc9cc1815e46bff980ed 162 SUPERFAMILY SSF54862 36 145 6.7E-24 T 11-10-2018 APT56_06430 e71523aba25acc9cc1815e46bff980ed 162 Gene3D G3DSA:3.30.70.3270 36 161 7.9E-37 T 11-10-2018 APT56_25610 b518f9561de41f5af61c0fd47b51f371 232 Gene3D G3DSA:1.10.260.40 1 67 1.0E-10 T 11-10-2018 APT56_25610 b518f9561de41f5af61c0fd47b51f371 232 Gene3D G3DSA:2.10.109.10 120 230 4.0E-6 T 11-10-2018 APT56_25610 b518f9561de41f5af61c0fd47b51f371 232 SMART SM00530 6 60 1.8E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_25610 b518f9561de41f5af61c0fd47b51f371 232 SUPERFAMILY SSF47413 1 64 2.82E-9 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_25610 b518f9561de41f5af61c0fd47b51f371 232 Pfam PF00717 Peptidase S24-like 145 212 1.7E-6 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C APT56_25610 b518f9561de41f5af61c0fd47b51f371 232 SUPERFAMILY SSF51306 127 228 7.32E-16 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily APT56_07610 5cfb51600dac39fa7d8e457df7f237ab 326 SUPERFAMILY SSF53850 111 286 4.53E-14 T 11-10-2018 APT56_07610 5cfb51600dac39fa7d8e457df7f237ab 326 Gene3D G3DSA:3.40.190.10 128 251 4.1E-106 T 11-10-2018 APT56_07610 5cfb51600dac39fa7d8e457df7f237ab 326 Gene3D G3DSA:3.40.190.150 31 316 4.1E-106 T 11-10-2018 APT56_07610 5cfb51600dac39fa7d8e457df7f237ab 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 322 1.7E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_07610 5cfb51600dac39fa7d8e457df7f237ab 326 PIRSF PIRSF017082 1 325 3.3E-76 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17685 f4118a8b3020e2728336b25e8b76fc5f 134 SUPERFAMILY SSF82649 2 126 5.49E-48 T 11-10-2018 APT56_17685 f4118a8b3020e2728336b25e8b76fc5f 134 Pfam PF01592 NifU-like N terminal domain 3 125 1.8E-56 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 APT56_17685 f4118a8b3020e2728336b25e8b76fc5f 134 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 6.5E-69 T 11-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 APT56_17685 f4118a8b3020e2728336b25e8b76fc5f 134 Gene3D G3DSA:3.90.1010.10 1 131 4.9E-58 T 11-10-2018 APT56_27130 0add0db57cc389e8beb163d5f904f1fe 319 Gene3D G3DSA:3.20.20.370 23 313 3.9E-63 T 11-10-2018 APT56_27130 0add0db57cc389e8beb163d5f904f1fe 319 SUPERFAMILY SSF88713 25 307 9.27E-56 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_27130 0add0db57cc389e8beb163d5f904f1fe 319 Pfam PF01522 Polysaccharide deacetylase 88 194 2.2E-5 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT56_02975 c1a46831681c951f2266ec08887e937e 373 Gene3D G3DSA:3.40.50.300 4 221 6.0E-64 T 11-10-2018 APT56_02975 c1a46831681c951f2266ec08887e937e 373 Pfam PF08402 TOBE domain 283 358 3.4E-7 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_02975 c1a46831681c951f2266ec08887e937e 373 SUPERFAMILY SSF52540 4 242 7.35E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02975 c1a46831681c951f2266ec08887e937e 373 Pfam PF00005 ABC transporter 21 161 2.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_02975 c1a46831681c951f2266ec08887e937e 373 Gene3D G3DSA:2.40.50.140 290 350 4.6E-26 T 11-10-2018 APT56_02975 c1a46831681c951f2266ec08887e937e 373 Gene3D G3DSA:2.40.50.940 222 359 4.6E-26 T 11-10-2018 APT56_02975 c1a46831681c951f2266ec08887e937e 373 SMART SM00382 28 219 5.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02975 c1a46831681c951f2266ec08887e937e 373 SUPERFAMILY SSF50331 237 364 8.02E-22 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_02975 c1a46831681c951f2266ec08887e937e 373 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 137 157 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 7.1E-40 T 11-10-2018 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 7.1E-40 T 11-10-2018 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 7.1E-40 T 11-10-2018 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 7.1E-40 T 11-10-2018 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 7.1E-40 T 11-10-2018 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 SUPERFAMILY SSF51905 1 314 8.64E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 3.2E-49 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 142 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 200 216 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 239 260 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 145 169 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 2.2E-73 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 Gene3D G3DSA:3.50.50.60 10 313 2.9E-124 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 314 4.7E-119 T 11-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 APT56_05735 f9ea82571ceb6b50e991351481c0e421 319 Gene3D G3DSA:3.50.50.60 119 245 2.9E-124 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_21470 699f475103ac6e24b32385025f9f3a6a 182 Pfam PF01814 Hemerythrin HHE cation binding domain 19 157 7.8E-18 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 APT56_21470 699f475103ac6e24b32385025f9f3a6a 182 Gene3D G3DSA:1.20.120.520 8 178 2.8E-43 T 11-10-2018 APT56_09920 9660ebf28b51dbe052d0c9070e0c8f34 524 Gene3D G3DSA:3.40.190.10 17 281 1.4E-75 T 11-10-2018 APT56_09920 9660ebf28b51dbe052d0c9070e0c8f34 524 SUPERFAMILY SSF53850 29 523 2.17E-132 T 11-10-2018 APT56_09920 9660ebf28b51dbe052d0c9070e0c8f34 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 436 7.8E-93 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_09920 9660ebf28b51dbe052d0c9070e0c8f34 524 PIRSF PIRSF002741 2 524 3.1E-150 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_09920 9660ebf28b51dbe052d0c9070e0c8f34 524 Gene3D G3DSA:3.10.105.10 282 493 2.5E-48 T 11-10-2018 APT56_20780 32783bf81e85640ee0d703a9f65f4670 320 SUPERFAMILY SSF46785 1 85 1.31E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20780 32783bf81e85640ee0d703a9f65f4670 320 SUPERFAMILY SSF53850 91 295 5.97E-22 T 11-10-2018 APT56_20780 32783bf81e85640ee0d703a9f65f4670 320 Gene3D G3DSA:3.40.190.290 90 297 8.4E-18 T 11-10-2018 APT56_20780 32783bf81e85640ee0d703a9f65f4670 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.9E-12 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20780 32783bf81e85640ee0d703a9f65f4670 320 Gene3D G3DSA:1.10.10.10 1 87 1.1E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20780 32783bf81e85640ee0d703a9f65f4670 320 Pfam PF03466 LysR substrate binding domain 90 291 4.2E-20 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21990 93569decccf6fa90bab96f2c7c2300dd 193 Gene3D G3DSA:1.20.910.10 2 191 2.9E-46 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_21990 93569decccf6fa90bab96f2c7c2300dd 193 Pfam PF01126 Heme oxygenase 7 182 9.1E-7 T 11-10-2018 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_21990 93569decccf6fa90bab96f2c7c2300dd 193 SUPERFAMILY SSF48613 5 183 3.08E-36 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_14705 22197398d8fc778289704d7a601e5978 425 Gene3D G3DSA:3.40.50.720 196 422 3.7E-50 T 11-10-2018 APT56_14705 22197398d8fc778289704d7a601e5978 425 SUPERFAMILY SSF51735 3 189 2.73E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_14705 22197398d8fc778289704d7a601e5978 425 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 176 5.0E-35 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_14705 22197398d8fc778289704d7a601e5978 425 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 314 412 1.4E-18 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_14705 22197398d8fc778289704d7a601e5978 425 SUPERFAMILY SSF52413 299 412 9.81E-21 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 APT56_14705 22197398d8fc778289704d7a601e5978 425 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 4 407 2.9E-114 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT56_14705 22197398d8fc778289704d7a601e5978 425 Gene3D G3DSA:3.40.50.720 1 192 1.1E-59 T 11-10-2018 APT56_14705 22197398d8fc778289704d7a601e5978 425 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 198 286 7.6E-24 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_14705 22197398d8fc778289704d7a601e5978 425 SUPERFAMILY SSF48179 197 287 7.99E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_14705 22197398d8fc778289704d7a601e5978 425 PIRSF PIRSF500136 1 424 1.7E-140 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 APT56_14705 22197398d8fc778289704d7a601e5978 425 SMART SM00984 313 413 2.3E-19 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_14705 22197398d8fc778289704d7a601e5978 425 PIRSF PIRSF000124 3 422 2.6E-49 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT56_17660 e2253d29fa66fc24c80a38a28836237a 64 PIRSF PIRSF039003 1 64 2.0E-35 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 APT56_17660 e2253d29fa66fc24c80a38a28836237a 64 Pfam PF04384 Iron-sulphur cluster assembly 1 63 4.1E-34 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 APT56_17660 e2253d29fa66fc24c80a38a28836237a 64 Gene3D G3DSA:1.10.10.600 1 64 1.9E-31 T 11-10-2018 IPR036762 IscX-like superfamily APT56_17660 e2253d29fa66fc24c80a38a28836237a 64 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 2 64 2.1E-35 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 APT56_17660 e2253d29fa66fc24c80a38a28836237a 64 SUPERFAMILY SSF140319 1 62 2.48E-27 T 11-10-2018 IPR036762 IscX-like superfamily APT56_17055 207ed5b54b126c4c14e278cd2d61fded 204 Gene3D G3DSA:1.20.1050.10 82 192 6.8E-62 T 11-10-2018 APT56_17055 207ed5b54b126c4c14e278cd2d61fded 204 Gene3D G3DSA:3.40.30.10 3 194 6.8E-62 T 11-10-2018 APT56_17055 207ed5b54b126c4c14e278cd2d61fded 204 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 79 1.3E-14 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_17055 207ed5b54b126c4c14e278cd2d61fded 204 SUPERFAMILY SSF52833 1 90 4.12E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_17055 207ed5b54b126c4c14e278cd2d61fded 204 SUPERFAMILY SSF47616 73 201 1.85E-17 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_27735 a294f1c237d40651ec43daa5a175cb15 106 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 2 101 1.5E-30 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27735 a294f1c237d40651ec43daa5a175cb15 106 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 11-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27735 a294f1c237d40651ec43daa5a175cb15 106 Gene3D G3DSA:2.30.30.30 1 103 2.5E-33 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 APT56_27735 a294f1c237d40651ec43daa5a175cb15 106 SUPERFAMILY SSF50104 3 100 1.35E-28 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APT56_27735 a294f1c237d40651ec43daa5a175cb15 106 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 101 8.0E-23 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27735 a294f1c237d40651ec43daa5a175cb15 106 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 19.192 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 SUPERFAMILY SSF51735 1 151 4.38E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 Pfam PF02080 TrkA-C domain 391 452 9.1E-12 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 Pfam PF02080 TrkA-C domain 154 221 4.3E-9 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.9E-21 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.9E-21 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.9E-21 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.9E-21 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.9E-21 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 Gene3D G3DSA:3.40.50.720 232 367 1.0E-37 T 11-10-2018 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 Pfam PF02254 TrkA-N domain 3 124 4.0E-28 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 Pfam PF02254 TrkA-N domain 234 351 9.3E-25 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 SUPERFAMILY SSF51735 232 377 4.46E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 Gene3D G3DSA:3.40.50.720 2 138 2.9E-42 T 11-10-2018 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 SUPERFAMILY SSF116726 136 221 4.71E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 Gene3D G3DSA:3.30.70.1450 368 459 4.6E-28 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 SUPERFAMILY SSF116726 391 441 2.62E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_26445 bb1f4f6fdd570322a1c9989e7a034942 459 Gene3D G3DSA:3.30.70.1450 139 231 1.3E-15 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_04280 cd5e5f40f7747f80f3eee69494011b30 397 Gene3D G3DSA:3.40.630.10 18 377 2.5E-135 T 11-10-2018 APT56_04280 cd5e5f40f7747f80f3eee69494011b30 397 SUPERFAMILY SSF53187 8 391 1.92E-86 T 11-10-2018 APT56_04280 cd5e5f40f7747f80f3eee69494011b30 397 Pfam PF01546 Peptidase family M20/M25/M40 78 390 7.8E-35 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_04280 cd5e5f40f7747f80f3eee69494011b30 397 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 17 381 5.2E-113 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_04280 cd5e5f40f7747f80f3eee69494011b30 397 Pfam PF07687 Peptidase dimerisation domain 191 287 5.3E-8 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_04280 cd5e5f40f7747f80f3eee69494011b30 397 PIRSF PIRSF005962 2 395 3.4E-126 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_04280 cd5e5f40f7747f80f3eee69494011b30 397 Gene3D G3DSA:3.30.70.360 186 302 2.5E-135 T 11-10-2018 APT56_04280 cd5e5f40f7747f80f3eee69494011b30 397 SUPERFAMILY SSF55031 188 303 3.93E-28 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 SUPERFAMILY SSF54373 177 278 4.32E-8 T 11-10-2018 APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 Pfam PF01494 FAD binding domain 7 348 6.4E-24 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 SUPERFAMILY SSF51905 5 372 8.49E-61 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 Gene3D G3DSA:3.50.50.60 6 382 1.4E-141 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 2.1E-19 T 11-10-2018 APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 301 2.1E-19 T 11-10-2018 APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 317 2.1E-19 T 11-10-2018 APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 352 2.1E-19 T 11-10-2018 APT56_16390 eb4460e3441e4eab2458a77eac105a79 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 2.1E-19 T 11-10-2018 APT56_08425 866d2d0b30ba92f4165116cb03182eb0 357 SUPERFAMILY SSF51569 7 348 7.95E-137 T 11-10-2018 APT56_08425 866d2d0b30ba92f4165116cb03182eb0 357 Pfam PF00793 DAHP synthetase I family 40 338 1.6E-102 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT56_08425 866d2d0b30ba92f4165116cb03182eb0 357 Gene3D G3DSA:3.20.20.70 1 350 2.0E-163 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_08425 866d2d0b30ba92f4165116cb03182eb0 357 PIRSF PIRSF001361 1 352 1.5E-160 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APT56_08425 866d2d0b30ba92f4165116cb03182eb0 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 3.5E-164 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APT56_07135 be6d76ccca4320425263d6bb702ff9a6 483 Pfam PF03972 MmgE/PrpD family 18 467 3.9E-165 T 11-10-2018 IPR005656 MmgE/PrpD GO:0016829 APT56_07135 be6d76ccca4320425263d6bb702ff9a6 483 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 13 483 7.8E-267 T 11-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 APT56_07135 be6d76ccca4320425263d6bb702ff9a6 483 SUPERFAMILY SSF103378 12 482 1.01E-166 T 11-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 APT56_07135 be6d76ccca4320425263d6bb702ff9a6 483 Gene3D G3DSA:3.30.1330.120 285 426 1.3E-209 T 11-10-2018 APT56_07135 be6d76ccca4320425263d6bb702ff9a6 483 Gene3D G3DSA:1.10.4100.10 22 461 1.3E-209 T 11-10-2018 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 Gene3D G3DSA:2.40.110.10 119 231 2.1E-42 T 11-10-2018 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 Gene3D G3DSA:1.10.540.10 1 118 3.8E-43 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 115 2.4E-34 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 SUPERFAMILY SSF47203 225 375 4.51E-58 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 PIRSF PIRSF016578 3 194 1.9E-10 T 11-10-2018 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 PIRSF PIRSF016578 219 373 6.0E-11 T 11-10-2018 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 Gene3D G3DSA:1.20.140.10 232 375 3.2E-55 T 11-10-2018 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 6.6E-51 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 214 2.0E-25 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_15355 8a1662c10840bdfd7e555f5386ebfd03 375 SUPERFAMILY SSF56645 2 240 7.07E-81 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_07675 68f5068f70fed0f60b8e91bbb454f360 296 Gene3D G3DSA:1.10.3720.10 30 290 6.4E-70 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07675 68f5068f70fed0f60b8e91bbb454f360 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 290 2.3E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_07675 68f5068f70fed0f60b8e91bbb454f360 296 SUPERFAMILY SSF161098 33 283 1.03E-54 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07675 68f5068f70fed0f60b8e91bbb454f360 296 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 28 284 8.2E-97 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APT56_07675 68f5068f70fed0f60b8e91bbb454f360 296 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 25 289 3.0E-127 T 11-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 APT56_06700 fe517d42a6a43587601c8045ec6e38f9 383 SUPERFAMILY SSF53187 4 379 3.01E-58 T 11-10-2018 APT56_06700 fe517d42a6a43587601c8045ec6e38f9 383 SUPERFAMILY SSF55031 177 283 6.73E-21 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_06700 fe517d42a6a43587601c8045ec6e38f9 383 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 7 379 1.2E-120 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 APT56_06700 fe517d42a6a43587601c8045ec6e38f9 383 Pfam PF01546 Peptidase family M20/M25/M40 69 378 5.0E-39 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_06700 fe517d42a6a43587601c8045ec6e38f9 383 Pfam PF07687 Peptidase dimerisation domain 172 282 1.3E-24 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_06700 fe517d42a6a43587601c8045ec6e38f9 383 Gene3D G3DSA:3.40.630.10 10 369 2.0E-107 T 11-10-2018 APT56_06700 fe517d42a6a43587601c8045ec6e38f9 383 Gene3D G3DSA:3.30.70.360 176 293 2.0E-107 T 11-10-2018 APT56_06700 fe517d42a6a43587601c8045ec6e38f9 383 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 102 139 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APT56_25205 7882345193c808255ac36091620d9bd7 321 SUPERFAMILY SSF51569 9 298 2.75E-73 T 11-10-2018 APT56_25205 7882345193c808255ac36091620d9bd7 321 Gene3D G3DSA:3.20.20.70 7 284 2.0E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_25205 7882345193c808255ac36091620d9bd7 321 Pfam PF00682 HMGL-like 9 278 4.1E-47 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT56_00330 4736a15096a4c6d99f3629af724e0036 151 Pfam PF07681 DoxX 30 102 7.3E-13 T 11-10-2018 IPR032808 DoxX family APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 SMART SM00344 182 287 4.1E-5 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 SMART SM00344 16 121 1.6E-11 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 SUPERFAMILY SSF54909 77 152 1.34E-8 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 Gene3D G3DSA:1.10.10.10 185 231 1.6E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 SUPERFAMILY SSF46785 179 232 4.03E-8 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 ProSitePatterns PS00356 LacI-type HTH domain signature. 201 219 - T 11-10-2018 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 Pfam PF13404 AsnC-type helix-turn-helix domain 16 56 3.3E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 Gene3D G3DSA:1.10.10.10 14 65 1.7E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 SUPERFAMILY SSF54909 241 320 1.61E-8 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 43 5.7E-6 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 43 62 5.7E-6 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 16 32 5.7E-6 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 Pfam PF09339 IclR helix-turn-helix domain 189 228 5.2E-8 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 SUPERFAMILY SSF46785 15 66 2.69E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 Gene3D G3DSA:3.30.70.920 234 323 2.0E-9 T 11-10-2018 APT56_27150 8f9984ab9d8b9900ff45c167fd20abaa 336 Gene3D G3DSA:3.30.70.920 68 161 7.6E-10 T 11-10-2018 APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 Gene3D G3DSA:3.40.190.10 162 258 2.8E-47 T 11-10-2018 APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 Gene3D G3DSA:1.10.10.10 3 96 2.3E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.1E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 Gene3D G3DSA:3.40.190.10 102 287 2.8E-47 T 11-10-2018 APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 SUPERFAMILY SSF46785 2 80 1.75E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 Pfam PF03466 LysR substrate binding domain 89 291 3.1E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21615 4f3d140cb18d0963d666adb96d28857c 315 SUPERFAMILY SSF53850 92 294 4.89E-41 T 11-10-2018 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 SUPERFAMILY SSF46626 192 310 9.88E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 Gene3D G3DSA:1.10.760.10 181 298 1.1E-6 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 PIRSF PIRSF000018 15 426 5.9E-137 T 11-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 315 400 1.2E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 SUPERFAMILY SSF46626 43 168 1.25E-25 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 SUPERFAMILY SSF46626 318 422 2.4E-24 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 Gene3D G3DSA:1.10.760.10 301 426 6.9E-33 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 Pfam PF00034 Cytochrome c 47 146 2.4E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_26680 77c6df00ac88b58a238d5a2e38f0dd88 426 Gene3D G3DSA:1.10.760.10 2 154 4.1E-12 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 SUPERFAMILY SSF53774 7 333 2.62E-94 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 PIRSF PIRSF500176 6 333 1.5E-78 T 11-10-2018 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 Gene3D G3DSA:3.40.50.40 222 334 1.1E-36 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 PIRSF PIRSF001220 3 334 3.3E-84 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 89 99 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 11 19 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 Pfam PF00710 Asparaginase, N-terminal 9 194 8.0E-56 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 PRINTS PR00139 Asparaginase/glutaminase family signature 9 20 3.4E-21 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 PRINTS PR00139 Asparaginase/glutaminase family signature 268 286 3.4E-21 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 PRINTS PR00139 Asparaginase/glutaminase family signature 88 106 3.4E-21 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 3 334 2.1E-115 T 11-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 Gene3D G3DSA:3.40.50.1170 3 218 1.2E-78 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 APT56_00135 75ad57bdc15e40dcf71cf7003aa7e975 334 SMART SM00870 8 328 2.7E-124 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APT56_02720 e67477019086c7869ef2d9c6873268b5 221 SUPERFAMILY SSF161098 12 214 2.62E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02720 e67477019086c7869ef2d9c6873268b5 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 215 7.1E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_02720 e67477019086c7869ef2d9c6873268b5 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 4.0E-24 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_02720 e67477019086c7869ef2d9c6873268b5 221 Gene3D G3DSA:1.10.3720.10 1 217 5.1E-53 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 118 141 1.0E-66 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 251 271 1.0E-66 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 275 301 1.0E-66 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 8 24 1.0E-66 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 229 249 1.0E-66 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 37 63 1.0E-66 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 198 223 1.0E-66 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 Pfam PF01706 FliG C-terminal domain 221 327 2.5E-40 T 11-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 SUPERFAMILY SSF48029 9 106 1.23E-19 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 Pfam PF14842 FliG N-terminal domain 8 104 2.2E-29 T 11-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 SUPERFAMILY SSF48029 118 328 2.09E-65 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 PIRSF PIRSF003161 2 336 7.7E-117 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 Gene3D G3DSA:1.10.220.30 1 89 1.5E-18 T 11-10-2018 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 Pfam PF14841 FliG middle domain 119 192 2.3E-24 T 11-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 Gene3D G3DSA:1.10.220.30 198 336 4.7E-44 T 11-10-2018 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 Gene3D G3DSA:1.10.220.30 93 197 2.1E-26 T 11-10-2018 APT56_12115 6ff49d628ddfaa1c37a8bad7d24900a1 336 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 5 335 1.6E-119 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 APT56_00025 a907db3907ceac3b10820350ee19a2a7 233 PIRSF PIRSF002155 1 227 3.2E-76 T 11-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_00025 a907db3907ceac3b10820350ee19a2a7 233 SUPERFAMILY SSF56808 6 225 2.35E-81 T 11-10-2018 IPR023674 Ribosomal protein L1-like APT56_00025 a907db3907ceac3b10820350ee19a2a7 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 11-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_00025 a907db3907ceac3b10820350ee19a2a7 233 Gene3D G3DSA:3.30.190.20 25 221 5.2E-78 T 11-10-2018 APT56_00025 a907db3907ceac3b10820350ee19a2a7 233 Gene3D G3DSA:3.40.50.790 68 159 5.2E-78 T 11-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich APT56_00025 a907db3907ceac3b10820350ee19a2a7 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.443 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 APT56_00025 a907db3907ceac3b10820350ee19a2a7 233 Pfam PF00687 Ribosomal protein L1p/L10e family 31 219 6.6E-50 T 11-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein APT56_00025 a907db3907ceac3b10820350ee19a2a7 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.6E-102 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 APT56_24100 44e1492d32470240c8fed04291aa6aad 201 Pfam PF01339 CheB methylesterase 21 196 3.4E-54 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 APT56_24100 44e1492d32470240c8fed04291aa6aad 201 SUPERFAMILY SSF52738 17 200 1.31E-54 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal APT56_24100 44e1492d32470240c8fed04291aa6aad 201 Gene3D G3DSA:3.40.50.180 11 200 5.3E-60 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal APT56_19505 b3d784f09731518217a8f3e75cd98151 244 SMART SM00382 26 201 6.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19505 b3d784f09731518217a8f3e75cd98151 244 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_19505 b3d784f09731518217a8f3e75cd98151 244 Pfam PF00005 ABC transporter 17 153 2.2E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19505 b3d784f09731518217a8f3e75cd98151 244 SUPERFAMILY SSF52540 2 201 3.2E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19505 b3d784f09731518217a8f3e75cd98151 244 Gene3D G3DSA:3.40.50.300 1 235 2.2E-56 T 11-10-2018 APT56_18640 c55edf8f7146b8589be9b065c6eefa8a 316 Gene3D G3DSA:3.40.190.10 120 241 4.0E-110 T 11-10-2018 APT56_18640 c55edf8f7146b8589be9b065c6eefa8a 316 PIRSF PIRSF017082 2 316 7.4E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18640 c55edf8f7146b8589be9b065c6eefa8a 316 SUPERFAMILY SSF53850 107 278 3.11E-19 T 11-10-2018 APT56_18640 c55edf8f7146b8589be9b065c6eefa8a 316 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 43 312 6.8E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18640 c55edf8f7146b8589be9b065c6eefa8a 316 Gene3D G3DSA:3.40.190.150 23 306 4.0E-110 T 11-10-2018 APT56_17995 8acbad7499dea2934d7fd0ab581445eb 174 ProSitePatterns PS00855 Signal peptidases II signature. 114 126 - T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APT56_17995 8acbad7499dea2934d7fd0ab581445eb 174 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 18 172 16.906 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APT56_17995 8acbad7499dea2934d7fd0ab581445eb 174 TIGRFAM TIGR00077 lspA: signal peptidase II 25 171 3.4E-39 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APT56_17995 8acbad7499dea2934d7fd0ab581445eb 174 Pfam PF01252 Signal peptidase (SPase) II 26 166 2.8E-38 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APT56_17995 8acbad7499dea2934d7fd0ab581445eb 174 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 111 126 1.9E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APT56_17995 8acbad7499dea2934d7fd0ab581445eb 174 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 64 72 1.9E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APT56_17995 8acbad7499dea2934d7fd0ab581445eb 174 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 147 163 1.9E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APT56_20305 216dcad4c41263e84a54b742a940940f 282 SUPERFAMILY SSF82861 19 104 5.89E-18 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APT56_20305 216dcad4c41263e84a54b742a940940f 282 Gene3D G3DSA:3.30.70.100 172 265 1.3E-16 T 11-10-2018 APT56_20305 216dcad4c41263e84a54b742a940940f 282 Gene3D G3DSA:2.30.30.60 121 171 1.4E-13 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily APT56_20305 216dcad4c41263e84a54b742a940940f 282 SUPERFAMILY SSF50182 106 172 6.21E-15 T 11-10-2018 IPR010920 LSM domain superfamily APT56_20305 216dcad4c41263e84a54b742a940940f 282 Pfam PF05552 Conserved TM helix 13 50 9.1E-7 T 11-10-2018 IPR008910 Conserved TM helix APT56_20305 216dcad4c41263e84a54b742a940940f 282 SUPERFAMILY SSF82689 173 269 9.42E-22 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APT56_20305 216dcad4c41263e84a54b742a940940f 282 Pfam PF00924 Mechanosensitive ion channel 69 257 7.9E-45 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT56_16210 13822f87032993534e1d4a94cdac0587 283 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 204 269 3.5E-11 T 11-10-2018 IPR039561 Peptidase M15C GO:0008233 APT56_16210 13822f87032993534e1d4a94cdac0587 283 SUPERFAMILY SSF55166 151 266 1.39E-20 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 APT56_16210 13822f87032993534e1d4a94cdac0587 283 Gene3D G3DSA:3.30.1380.10 149 269 2.4E-22 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 APT56_22405 672e849c14303ad79b8c60345954097a 371 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 353 1.2E-160 T 11-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 APT56_22405 672e849c14303ad79b8c60345954097a 371 PIRSF PIRSF007313 1 363 2.0E-153 T 11-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 4.6E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 4.6E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 4.6E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 SUPERFAMILY SSF52172 9 161 2.7E-32 T 11-10-2018 IPR011006 CheY-like superfamily APT56_13260 fb26c2259403671e28c064a398e6e82c 204 Gene3D G3DSA:1.10.10.10 136 201 8.4E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13260 fb26c2259403671e28c064a398e6e82c 204 SMART SM00448 8 118 2.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 SUPERFAMILY SSF46894 143 199 1.79E-16 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 SMART SM00421 142 199 1.0E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 144 197 3.4E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 Pfam PF00072 Response regulator receiver domain 10 118 6.8E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_13260 fb26c2259403671e28c064a398e6e82c 204 Gene3D G3DSA:3.40.50.2300 3 132 4.6E-38 T 11-10-2018 APT56_01560 254440f2e1768167d65fc75ecc5b61ef 356 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 20 311 2.7E-96 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 APT56_01560 254440f2e1768167d65fc75ecc5b61ef 356 Gene3D G3DSA:3.40.50.720 126 295 6.4E-123 T 11-10-2018 APT56_01560 254440f2e1768167d65fc75ecc5b61ef 356 Gene3D G3DSA:3.30.1780.10 20 333 6.4E-123 T 11-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 APT56_01560 254440f2e1768167d65fc75ecc5b61ef 356 PIRSF PIRSF001439 20 323 1.4E-52 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 APT56_01560 254440f2e1768167d65fc75ecc5b61ef 356 SUPERFAMILY SSF51735 2 336 4.91E-96 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_09475 897d4932404fe227ceae6f4333cb165b 250 SMART SM00079 25 250 0.0027 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 APT56_09475 897d4932404fe227ceae6f4333cb165b 250 SMART SM00062 25 250 2.1E-47 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_09475 897d4932404fe227ceae6f4333cb165b 250 SUPERFAMILY SSF53850 1 248 1.24E-61 T 11-10-2018 APT56_09475 897d4932404fe227ceae6f4333cb165b 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 247 8.2E-57 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_09475 897d4932404fe227ceae6f4333cb165b 250 Gene3D G3DSA:3.40.190.10 25 244 1.0E-60 T 11-10-2018 APT56_09475 897d4932404fe227ceae6f4333cb165b 250 Gene3D G3DSA:3.40.190.10 113 208 1.0E-60 T 11-10-2018 APT56_21025 9c74e90877bdbbb765aa86dc903c9c14 346 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 40 332 1.3E-82 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 APT56_21025 9c74e90877bdbbb765aa86dc903c9c14 346 Gene3D G3DSA:3.40.718.10 2 338 2.6E-102 T 11-10-2018 APT56_21025 9c74e90877bdbbb765aa86dc903c9c14 346 SUPERFAMILY SSF53659 8 336 2.58E-88 T 11-10-2018 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 Pfam PF02785 Biotin carboxylase C-terminal domain 336 448 2.9E-35 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 Pfam PF00364 Biotin-requiring enzyme 604 669 1.2E-18 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 Gene3D G3DSA:2.40.50.100 605 670 7.3E-24 T 11-10-2018 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.3E-41 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 SUPERFAMILY SSF51230 595 669 1.96E-21 T 11-10-2018 IPR011053 Single hybrid motif APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 SUPERFAMILY SSF52440 1 113 3.53E-45 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 SUPERFAMILY SSF56059 83 348 4.24E-71 T 11-10-2018 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 1.1E-79 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 SUPERFAMILY SSF51246 331 451 1.1E-38 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 Gene3D G3DSA:3.30.470.130 1 454 6.3E-201 T 11-10-2018 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 SMART SM01209 114 293 4.1E-4 T 11-10-2018 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 626 643 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_00815 747f962c8f7e147d0b84a7c747734ab2 671 SMART SM00878 336 447 2.5E-55 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_26010 809228fb862969f38a95771b2d151845 403 Gene3D G3DSA:3.40.50.2300 41 357 1.2E-64 T 11-10-2018 APT56_26010 809228fb862969f38a95771b2d151845 403 Gene3D G3DSA:3.40.50.2300 153 287 1.2E-64 T 11-10-2018 APT56_26010 809228fb862969f38a95771b2d151845 403 Pfam PF13458 Periplasmic binding protein 33 377 9.6E-58 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_26010 809228fb862969f38a95771b2d151845 403 SUPERFAMILY SSF53822 32 385 2.71E-66 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_15210 26dff1bc88bec6e4f018f073043a698d 195 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 3.3E-30 T 11-10-2018 IPR001498 Impact, N-terminal APT56_15210 26dff1bc88bec6e4f018f073043a698d 195 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 71 100 - T 11-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site APT56_15210 26dff1bc88bec6e4f018f073043a698d 195 SUPERFAMILY SSF54211 4 121 7.59E-41 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_15210 26dff1bc88bec6e4f018f073043a698d 195 Pfam PF09186 Domain of unknown function (DUF1949) 132 188 1.5E-10 T 11-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal APT56_15210 26dff1bc88bec6e4f018f073043a698d 195 SUPERFAMILY SSF54980 129 192 2.09E-9 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_15210 26dff1bc88bec6e4f018f073043a698d 195 Gene3D G3DSA:3.30.230.30 1 125 3.8E-48 T 11-10-2018 IPR036956 Impact, N-terminal domain superfamily APT56_00810 b7d65989691f5977a94268c5da804f22 410 SUPERFAMILY SSF103473 12 400 6.54E-43 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_00810 b7d65989691f5977a94268c5da804f22 410 Pfam PF05977 Transmembrane secretion effector 8 391 5.4E-34 T 11-10-2018 IPR010290 Transmembrane secretion effector APT56_00810 b7d65989691f5977a94268c5da804f22 410 Gene3D G3DSA:1.20.1250.20 11 393 4.0E-30 T 11-10-2018 APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 249 4.6E-57 T 11-10-2018 APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 2.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.5E-32 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 SUPERFAMILY SSF51735 11 251 3.86E-72 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_03125 002da2ae4f53583f18641d6aab6fdcbc 268 Gene3D G3DSA:3.40.50.720 7 255 1.2E-73 T 11-10-2018 APT56_03115 b00f381f44ee82bac43325398c453e21 177 Gene3D G3DSA:3.10.450.50 2 173 9.2E-49 T 11-10-2018 APT56_03115 b00f381f44ee82bac43325398c453e21 177 SUPERFAMILY SSF54427 20 175 7.78E-46 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_03115 b00f381f44ee82bac43325398c453e21 177 Pfam PF00866 Ring hydroxylating beta subunit 33 165 2.4E-32 T 11-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 SUPERFAMILY SSF55785 6 71 6.81E-8 T 11-10-2018 IPR035965 PAS domain superfamily APT56_14815 af755a955d34870c3d3f257699cc85a4 354 SMART SM00387 229 352 2.6E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_14815 af755a955d34870c3d3f257699cc85a4 354 Gene3D G3DSA:3.30.450.20 2 108 3.5E-11 T 11-10-2018 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 Gene3D G3DSA:3.30.565.10 188 350 2.4E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_14815 af755a955d34870c3d3f257699cc85a4 354 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 110 2.0E-7 T 11-10-2018 IPR000014 PAS domain APT56_14815 af755a955d34870c3d3f257699cc85a4 354 SUPERFAMILY SSF47384 110 182 9.02E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 PRINTS PR00344 Bacterial sensor protein C-terminal signature 302 312 4.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 PRINTS PR00344 Bacterial sensor protein C-terminal signature 313 331 4.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 PRINTS PR00344 Bacterial sensor protein C-terminal signature 336 349 4.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 PRINTS PR00344 Bacterial sensor protein C-terminal signature 284 298 4.5E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 Pfam PF00512 His Kinase A (phospho-acceptor) domain 125 180 3.4E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 SMART SM00388 124 189 3.4E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 Pfam PF00989 PAS fold 4 89 2.5E-8 T 11-10-2018 IPR013767 PAS fold GO:0006355 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 Gene3D G3DSA:1.10.287.130 128 185 3.5E-11 T 11-10-2018 APT56_14815 af755a955d34870c3d3f257699cc85a4 354 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 229 351 8.6E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_14815 af755a955d34870c3d3f257699cc85a4 354 SUPERFAMILY SSF55874 191 350 1.83E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_14815 af755a955d34870c3d3f257699cc85a4 354 SMART SM00091 1 66 1.0E-4 T 11-10-2018 IPR000014 PAS domain APT56_01705 65d7bbe263427dfcbab79c8c61f589ce 208 Gene3D G3DSA:2.60.40.10 5 114 4.3E-5 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_01705 65d7bbe263427dfcbab79c8c61f589ce 208 SUPERFAMILY SSF49354 5 112 7.59E-19 T 11-10-2018 IPR008962 PapD-like superfamily APT56_01705 65d7bbe263427dfcbab79c8c61f589ce 208 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 5 112 6.6E-15 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 293 1.2E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 452 5.7E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_06505 15f6634711e012e7bb3df7d665901aac 464 Gene3D G3DSA:3.30.450.300 36 162 1.6E-45 T 11-10-2018 IPR038421 Sensor histidine kinase RisS, periplasmic domain superfamily APT56_06505 15f6634711e012e7bb3df7d665901aac 464 SMART SM00388 238 297 1.8E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 SUPERFAMILY SSF55874 296 454 4.58E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_06505 15f6634711e012e7bb3df7d665901aac 464 Gene3D G3DSA:1.10.287.130 186 292 4.1E-20 T 11-10-2018 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 SUPERFAMILY SSF158472 187 234 1.07E-5 T 11-10-2018 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 407 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 393 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 450 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 9.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 SMART SM00387 339 453 8.2E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_06505 15f6634711e012e7bb3df7d665901aac 464 SUPERFAMILY SSF47384 222 293 9.61E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 Gene3D G3DSA:3.30.565.10 298 456 7.4E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_06505 15f6634711e012e7bb3df7d665901aac 464 Pfam PF16524 Periplasmic domain of Sensor histidine kinase RisS 51 157 1.2E-38 T 11-10-2018 IPR032408 Sensor histidine kinase RisS, periplasmic domain APT56_06505 15f6634711e012e7bb3df7d665901aac 464 SMART SM00304 185 237 4.4E-12 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_06505 15f6634711e012e7bb3df7d665901aac 464 Pfam PF00672 HAMP domain 187 233 9.0E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_08740 7c5d4613afad5b73b6f6deaa4443f962 203 Pfam PF03942 DTW domain 3 181 1.0E-41 T 11-10-2018 IPR005636 DTW APT56_08740 7c5d4613afad5b73b6f6deaa4443f962 203 SMART SM01144 2 187 4.4E-59 T 11-10-2018 IPR005636 DTW APT56_26860 302bf20dd36008c88b5267a0bcb68dae 240 SMART SM00382 26 217 3.3E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_26860 302bf20dd36008c88b5267a0bcb68dae 240 Pfam PF00005 ABC transporter 17 166 2.4E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_26860 302bf20dd36008c88b5267a0bcb68dae 240 SUPERFAMILY SSF52540 2 236 1.3E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26860 302bf20dd36008c88b5267a0bcb68dae 240 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_26860 302bf20dd36008c88b5267a0bcb68dae 240 Gene3D G3DSA:3.40.50.300 1 239 1.1E-59 T 11-10-2018 APT56_18785 3fe6552de7751785f357a6eb41e20b09 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 18 49 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_18785 3fe6552de7751785f357a6eb41e20b09 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 50 8.0E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_18785 3fe6552de7751785f357a6eb41e20b09 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 6 19 8.0E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_18785 3fe6552de7751785f357a6eb41e20b09 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 6 52 1.5E-17 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_18785 3fe6552de7751785f357a6eb41e20b09 187 Gene3D G3DSA:1.10.357.10 2 187 7.2E-31 T 11-10-2018 APT56_18785 3fe6552de7751785f357a6eb41e20b09 187 SUPERFAMILY SSF46689 3 72 1.9E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18785 3fe6552de7751785f357a6eb41e20b09 187 SUPERFAMILY SSF48498 76 182 2.37E-5 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_25550 56e014d09eceba19c01f0f604756cfae 198 Pfam PF06805 Bacteriophage lambda tail assembly protein I 7 89 1.8E-10 T 11-10-2018 IPR010654 Bacteriophage lambda tail assembly I APT56_09750 8239aa753326c0b2ce8e936311322ddd 628 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 413 515 2.0E-27 T 11-10-2018 IPR010221 VCBS repeat APT56_09750 8239aa753326c0b2ce8e936311322ddd 628 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 228 306 1.4E-8 T 11-10-2018 IPR010221 VCBS repeat APT56_09750 8239aa753326c0b2ce8e936311322ddd 628 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 521 616 6.2E-27 T 11-10-2018 IPR010221 VCBS repeat APT56_09750 8239aa753326c0b2ce8e936311322ddd 628 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 311 408 1.9E-32 T 11-10-2018 IPR010221 VCBS repeat APT56_17795 1102e79f31a47b6bbb37f5f943400e0d 305 Gene3D G3DSA:3.40.190.10 163 266 1.3E-54 T 11-10-2018 APT56_17795 1102e79f31a47b6bbb37f5f943400e0d 305 Pfam PF03466 LysR substrate binding domain 90 294 2.1E-32 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_17795 1102e79f31a47b6bbb37f5f943400e0d 305 Gene3D G3DSA:1.10.10.10 2 85 2.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17795 1102e79f31a47b6bbb37f5f943400e0d 305 SUPERFAMILY SSF46785 2 111 3.48E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17795 1102e79f31a47b6bbb37f5f943400e0d 305 Gene3D G3DSA:3.40.190.10 92 290 1.3E-54 T 11-10-2018 APT56_17795 1102e79f31a47b6bbb37f5f943400e0d 305 SUPERFAMILY SSF53850 91 295 2.9E-33 T 11-10-2018 APT56_17795 1102e79f31a47b6bbb37f5f943400e0d 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 4.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02605 851ad7c38981b083a42bbed72661e990 579 Gene3D G3DSA:2.60.40.420 448 579 6.1E-32 T 11-10-2018 IPR008972 Cupredoxin APT56_02605 851ad7c38981b083a42bbed72661e990 579 ProSitePatterns PS00079 Multicopper oxidases signature 1. 556 576 - T 11-10-2018 IPR033138 Multicopper oxidases, conserved site APT56_02605 851ad7c38981b083a42bbed72661e990 579 Pfam PF07731 Multicopper oxidase 462 578 3.4E-26 T 11-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 APT56_02605 851ad7c38981b083a42bbed72661e990 579 SUPERFAMILY SSF49503 38 188 6.88E-41 T 11-10-2018 IPR008972 Cupredoxin APT56_02605 851ad7c38981b083a42bbed72661e990 579 SUPERFAMILY SSF49503 429 578 4.98E-40 T 11-10-2018 IPR008972 Cupredoxin APT56_02605 851ad7c38981b083a42bbed72661e990 579 Pfam PF00394 Multicopper oxidase 175 350 3.1E-31 T 11-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 APT56_02605 851ad7c38981b083a42bbed72661e990 579 Pfam PF07732 Multicopper oxidase 55 165 3.8E-41 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 APT56_02605 851ad7c38981b083a42bbed72661e990 579 ProSitePatterns PS00079 Multicopper oxidases signature 1. 140 160 - T 11-10-2018 IPR033138 Multicopper oxidases, conserved site APT56_02605 851ad7c38981b083a42bbed72661e990 579 SUPERFAMILY SSF49503 169 390 1.34E-55 T 11-10-2018 IPR008972 Cupredoxin APT56_02605 851ad7c38981b083a42bbed72661e990 579 Gene3D G3DSA:2.60.40.420 31 164 1.0E-39 T 11-10-2018 IPR008972 Cupredoxin APT56_02605 851ad7c38981b083a42bbed72661e990 579 ProSitePatterns PS00080 Multicopper oxidases signature 2. 561 572 - T 11-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 APT56_02605 851ad7c38981b083a42bbed72661e990 579 Gene3D G3DSA:2.60.40.420 173 380 5.2E-42 T 11-10-2018 IPR008972 Cupredoxin APT56_02605 851ad7c38981b083a42bbed72661e990 579 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 8 579 6.7E-284 T 11-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 APT56_08500 95f3a2997b70c5552ec79852cd73d2f0 152 SUPERFAMILY SSF47175 27 149 1.32E-40 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 APT56_08500 95f3a2997b70c5552ec79852cd73d2f0 152 Pfam PF01322 Cytochrome C' 32 149 6.3E-37 T 11-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 APT56_08500 95f3a2997b70c5552ec79852cd73d2f0 152 PIRSF PIRSF000027 6 151 1.0E-46 T 11-10-2018 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 APT56_08500 95f3a2997b70c5552ec79852cd73d2f0 152 Gene3D G3DSA:1.20.120.10 26 152 2.0E-49 T 11-10-2018 APT56_08500 95f3a2997b70c5552ec79852cd73d2f0 152 PRINTS PR00608 Class II cytochrome C signature 115 138 4.9E-9 T 11-10-2018 IPR015984 Cytochrome c prime, subgroup APT56_08500 95f3a2997b70c5552ec79852cd73d2f0 152 PRINTS PR00608 Class II cytochrome C signature 138 149 4.9E-9 T 11-10-2018 IPR015984 Cytochrome c prime, subgroup APT56_08935 5f4478b0feb4525c1dc128b1f521124e 327 Pfam PF00005 ABC transporter 41 184 4.5E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_08935 5f4478b0feb4525c1dc128b1f521124e 327 SMART SM00382 49 233 7.7E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08935 5f4478b0feb4525c1dc128b1f521124e 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 317 4.7E-25 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_08935 5f4478b0feb4525c1dc128b1f521124e 327 SUPERFAMILY SSF52540 34 255 1.81E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08935 5f4478b0feb4525c1dc128b1f521124e 327 Gene3D G3DSA:3.40.50.300 27 324 5.0E-92 T 11-10-2018 APT56_08935 5f4478b0feb4525c1dc128b1f521124e 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 299 2.9E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_08935 5f4478b0feb4525c1dc128b1f521124e 327 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_27760 a01fedc45a5ded451a86e23ac6ab441b 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 300 316 8.0E-8 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_27760 a01fedc45a5ded451a86e23ac6ab441b 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 285 300 8.0E-8 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_27760 a01fedc45a5ded451a86e23ac6ab441b 319 SUPERFAMILY SSF51215 78 170 4.18E-5 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_27760 a01fedc45a5ded451a86e23ac6ab441b 319 Pfam PF12833 Helix-turn-helix domain 238 318 1.5E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_27760 a01fedc45a5ded451a86e23ac6ab441b 319 Gene3D G3DSA:1.10.10.60 210 319 4.6E-29 T 11-10-2018 APT56_27760 a01fedc45a5ded451a86e23ac6ab441b 319 Pfam PF14525 AraC-binding-like domain 20 196 2.2E-22 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like APT56_27760 a01fedc45a5ded451a86e23ac6ab441b 319 SUPERFAMILY SSF46689 267 318 1.12E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_27760 a01fedc45a5ded451a86e23ac6ab441b 319 SMART SM00342 231 316 9.9E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_15930 4516b14dddc1d9c037eaa4665c8f2c85 198 Gene3D G3DSA:3.40.630.30 7 190 3.8E-33 T 11-10-2018 APT56_15930 4516b14dddc1d9c037eaa4665c8f2c85 198 SUPERFAMILY SSF55729 5 166 7.33E-32 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_15930 4516b14dddc1d9c037eaa4665c8f2c85 198 Pfam PF13302 Acetyltransferase (GNAT) domain 14 155 6.4E-28 T 11-10-2018 IPR000182 GNAT domain APT56_04830 713125e26bf268f46a0e9120538267d7 232 Gene3D G3DSA:1.20.1440.100 18 92 7.4E-83 T 11-10-2018 APT56_04830 713125e26bf268f46a0e9120538267d7 232 SUPERFAMILY SSF56784 4 226 2.51E-32 T 11-10-2018 IPR036412 HAD-like superfamily APT56_04830 713125e26bf268f46a0e9120538267d7 232 Gene3D G3DSA:3.40.50.1000 6 221 7.4E-83 T 11-10-2018 IPR023214 HAD superfamily APT56_04830 713125e26bf268f46a0e9120538267d7 232 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 6 207 1.7E-35 T 11-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like APT56_04830 713125e26bf268f46a0e9120538267d7 232 Pfam PF12710 haloacid dehalogenase-like hydrolase 7 195 2.5E-40 T 11-10-2018 APT56_04830 713125e26bf268f46a0e9120538267d7 232 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 6 197 1.7E-22 T 11-10-2018 APT56_26050 6e6944e7c80a55d060df33ec5d10719f 201 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 77 7.5E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_26050 6e6944e7c80a55d060df33ec5d10719f 201 Gene3D G3DSA:1.20.1050.10 82 191 7.9E-67 T 11-10-2018 APT56_26050 6e6944e7c80a55d060df33ec5d10719f 201 SUPERFAMILY SSF47616 73 199 2.42E-14 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_26050 6e6944e7c80a55d060df33ec5d10719f 201 Gene3D G3DSA:3.40.30.10 4 193 7.9E-67 T 11-10-2018 APT56_26050 6e6944e7c80a55d060df33ec5d10719f 201 SUPERFAMILY SSF52833 1 77 8.24E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_26050 6e6944e7c80a55d060df33ec5d10719f 201 Pfam PF13410 Glutathione S-transferase, C-terminal domain 124 187 7.5E-6 T 11-10-2018 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 Gene3D G3DSA:2.40.37.10 237 372 4.7E-91 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 Pfam PF00842 Alanine racemase, C-terminal domain 252 373 1.1E-35 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 SMART SM01005 252 377 5.1E-52 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 TIGRFAM TIGR00492 alr: alanine racemase 18 375 4.3E-80 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 PRINTS PR00992 Alanine racemase signature 77 95 3.8E-43 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 PRINTS PR00992 Alanine racemase signature 359 372 3.8E-43 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 PRINTS PR00992 Alanine racemase signature 285 300 3.8E-43 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 PRINTS PR00992 Alanine racemase signature 306 323 3.8E-43 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 PRINTS PR00992 Alanine racemase signature 174 185 3.8E-43 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 PRINTS PR00992 Alanine racemase signature 211 238 3.8E-43 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 PRINTS PR00992 Alanine racemase signature 268 283 3.8E-43 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 PRINTS PR00992 Alanine racemase signature 43 59 3.8E-43 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 SUPERFAMILY SSF50621 247 374 9.42E-39 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 Pfam PF01168 Alanine racemase, N-terminal domain 22 238 6.7E-47 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 48 58 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 Hamap MF_01201 Alanine racemase. 15 377 27.983 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 Gene3D G3DSA:3.20.20.10 24 236 4.7E-91 T 11-10-2018 IPR029066 PLP-binding barrel APT56_03830 639f199ad49458f204ea2d9a4ef8c270 383 SUPERFAMILY SSF51419 22 253 1.53E-43 T 11-10-2018 IPR029066 PLP-binding barrel APT56_24225 f98e20378d6292e050c7b1b55c90d069 129 Pfam PF03965 Penicillinase repressor 12 125 2.3E-22 T 11-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 APT56_24225 f98e20378d6292e050c7b1b55c90d069 129 Gene3D G3DSA:1.10.10.10 6 75 6.4E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24225 f98e20378d6292e050c7b1b55c90d069 129 SUPERFAMILY SSF46785 9 126 1.95E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_27485 d4c90cb718035aa9a4202cfec737abda 400 Pfam PF00155 Aminotransferase class I and II 49 387 4.2E-32 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_27485 d4c90cb718035aa9a4202cfec737abda 400 Gene3D G3DSA:3.40.640.10 70 289 2.5E-136 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_27485 d4c90cb718035aa9a4202cfec737abda 400 Gene3D G3DSA:3.90.1150.10 23 394 2.5E-136 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_27485 d4c90cb718035aa9a4202cfec737abda 400 SUPERFAMILY SSF53383 9 398 6.54E-104 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 266 1.6E-7 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 495 520 0.0017 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 ProSitePatterns PS00211 ABC transporters family signature. 416 430 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 SUPERFAMILY SSF52540 273 515 2.56E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 Pfam PF00005 ABC transporter 24 181 3.5E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 SUPERFAMILY SSF52540 4 253 5.84E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 SMART SM00382 31 231 8.5E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 SMART SM00382 302 501 9.4E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 Gene3D G3DSA:3.40.50.300 1 272 5.1E-83 T 11-10-2018 APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 Gene3D G3DSA:3.40.50.300 273 530 8.0E-85 T 11-10-2018 APT56_22330 cf6eed064793e5eb8023df4eb3aec509 532 Pfam PF00005 ABC transporter 293 443 1.0E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 Gene3D G3DSA:3.40.190.10 96 287 4.6E-44 T 11-10-2018 APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 SUPERFAMILY SSF53850 94 303 1.45E-39 T 11-10-2018 APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 Gene3D G3DSA:3.40.190.10 168 273 4.6E-44 T 11-10-2018 APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 Gene3D G3DSA:1.10.10.10 5 95 5.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.5E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.5E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.5E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 SUPERFAMILY SSF46785 4 111 3.0E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 Pfam PF03466 LysR substrate binding domain 93 298 8.8E-42 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_25295 c67b8554179d71ab4a8e265634a1bdf5 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.3E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15875 a1858a011f04bc5ebcc812878e415f5c 336 PRINTS PR00069 Aldo-keto reductase signature 134 151 5.0E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_15875 a1858a011f04bc5ebcc812878e415f5c 336 PRINTS PR00069 Aldo-keto reductase signature 39 63 5.0E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_15875 a1858a011f04bc5ebcc812878e415f5c 336 PRINTS PR00069 Aldo-keto reductase signature 103 121 5.0E-5 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_15875 a1858a011f04bc5ebcc812878e415f5c 336 Pfam PF00248 Aldo/keto reductase family 15 309 5.9E-62 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_15875 a1858a011f04bc5ebcc812878e415f5c 336 Gene3D G3DSA:3.20.20.100 1 322 2.6E-104 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_15875 a1858a011f04bc5ebcc812878e415f5c 336 SUPERFAMILY SSF51430 1 311 3.4E-94 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_02120 9f8aaa30b29d159f8531506b31731b08 234 SMART SM00882 10 207 3.6E-58 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_02120 9f8aaa30b29d159f8531506b31731b08 234 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 8 213 2.2E-83 T 11-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 APT56_02120 9f8aaa30b29d159f8531506b31731b08 234 SUPERFAMILY SSF100950 8 217 9.3E-59 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_02120 9f8aaa30b29d159f8531506b31731b08 234 Pfam PF01144 Coenzyme A transferase 10 205 2.3E-31 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_02120 9f8aaa30b29d159f8531506b31731b08 234 Gene3D G3DSA:3.40.1080.10 5 217 1.0E-78 T 11-10-2018 APT56_12470 275e0b386700b223421127d7c7bb59b9 260 PIRSF PIRSF039085 6 254 2.1E-109 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_12470 275e0b386700b223421127d7c7bb59b9 260 Gene3D G3DSA:3.40.50.300 5 257 9.9E-75 T 11-10-2018 APT56_12470 275e0b386700b223421127d7c7bb59b9 260 SMART SM00382 34 226 2.4E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_12470 275e0b386700b223421127d7c7bb59b9 260 Pfam PF00005 ABC transporter 25 178 1.9E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_12470 275e0b386700b223421127d7c7bb59b9 260 SUPERFAMILY SSF52540 9 248 2.37E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12470 275e0b386700b223421127d7c7bb59b9 260 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_09555 e76dac6150d5f4f28eb311f22290d46a 434 Gene3D G3DSA:3.30.479.30 157 265 1.1E-16 T 11-10-2018 APT56_09555 e76dac6150d5f4f28eb311f22290d46a 434 Pfam PF12221 Bacterial membrane protein N terminal 8 58 6.4E-11 T 11-10-2018 IPR020980 Menbrane protein HflK, N-terminal APT56_09555 e76dac6150d5f4f28eb311f22290d46a 434 SUPERFAMILY SSF117892 166 281 4.05E-18 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily APT56_09555 e76dac6150d5f4f28eb311f22290d46a 434 Pfam PF01145 SPFH domain / Band 7 family 103 289 3.5E-27 T 11-10-2018 IPR001107 Band 7 domain APT56_09555 e76dac6150d5f4f28eb311f22290d46a 434 TIGRFAM TIGR01933 hflK: HflK protein 101 376 1.4E-88 T 11-10-2018 IPR010201 HflK GO:0016021 APT56_09555 e76dac6150d5f4f28eb311f22290d46a 434 SMART SM00244 99 274 1.9E-22 T 11-10-2018 IPR001107 Band 7 domain APT56_02330 7c2c66f413924f921b2787471933b1ee 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 Gene3D G3DSA:1.20.140.10 235 382 1.5E-55 T 11-10-2018 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 117 3.7E-25 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 SUPERFAMILY SSF47203 227 379 4.35E-56 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 SUPERFAMILY SSF56645 5 242 4.19E-73 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 216 3.0E-27 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 5.8E-49 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 PIRSF PIRSF016578 15 367 8.5E-19 T 11-10-2018 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 Gene3D G3DSA:1.10.540.10 2 118 2.9E-28 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_02330 7c2c66f413924f921b2787471933b1ee 382 Gene3D G3DSA:2.40.110.10 120 234 9.7E-40 T 11-10-2018 APT56_19885 74d8d7003603359755c35753904cb8a9 275 SUPERFAMILY SSF52467 6 272 9.09E-81 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_19885 74d8d7003603359755c35753904cb8a9 275 Gene3D G3DSA:3.40.50.1220 15 264 2.4E-82 T 11-10-2018 APT56_19885 74d8d7003603359755c35753904cb8a9 275 Gene3D G3DSA:3.30.1600.10 35 197 2.4E-82 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily APT56_19885 74d8d7003603359755c35753904cb8a9 275 Hamap MF_01967 NAD-dependent protein deacetylase [cobB]. 2 272 61.792 T 11-10-2018 IPR026587 Sirtuin, class II Reactome: R-HSA-2151201 APT56_19885 74d8d7003603359755c35753904cb8a9 275 Pfam PF02146 Sir2 family 26 228 6.0E-47 T 11-10-2018 IPR003000 Sirtuin family GO:0070403 APT56_01190 2a6bb6ac52ee51e5692e8f23ab303285 116 Gene3D G3DSA:1.10.287.1080 7 103 5.5E-28 T 11-10-2018 APT56_01190 2a6bb6ac52ee51e5692e8f23ab303285 116 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 17 101 1.9E-14 T 11-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 APT56_01190 2a6bb6ac52ee51e5692e8f23ab303285 116 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 9 98 20.707 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 APT56_01190 2a6bb6ac52ee51e5692e8f23ab303285 116 SUPERFAMILY SSF101386 15 102 3.18E-22 T 11-10-2018 APT56_01190 2a6bb6ac52ee51e5692e8f23ab303285 116 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 12 98 3.0E-27 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 APT56_15870 9f9448f6031e3672732bfe4a56ca53a2 444 Pfam PF07690 Major Facilitator Superfamily 253 432 4.4E-14 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_15870 9f9448f6031e3672732bfe4a56ca53a2 444 Pfam PF00083 Sugar (and other) transporter 14 224 7.6E-21 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_15870 9f9448f6031e3672732bfe4a56ca53a2 444 Gene3D G3DSA:1.20.1250.20 9 427 6.5E-55 T 11-10-2018 APT56_15870 9f9448f6031e3672732bfe4a56ca53a2 444 SUPERFAMILY SSF103473 4 426 1.07E-60 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_06255 4123172e1975b7d4a5320aae94c83ac3 206 Pfam PF07729 FCD domain 79 201 6.4E-20 T 11-10-2018 IPR011711 GntR, C-terminal APT56_06255 4123172e1975b7d4a5320aae94c83ac3 206 SMART SM00345 11 69 3.9E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_06255 4123172e1975b7d4a5320aae94c83ac3 206 Gene3D G3DSA:1.20.120.530 75 206 4.2E-19 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_06255 4123172e1975b7d4a5320aae94c83ac3 206 Gene3D G3DSA:1.10.10.10 1 70 1.6E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06255 4123172e1975b7d4a5320aae94c83ac3 206 SUPERFAMILY SSF46785 11 73 1.41E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_06255 4123172e1975b7d4a5320aae94c83ac3 206 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 69 1.0E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_06255 4123172e1975b7d4a5320aae94c83ac3 206 SUPERFAMILY SSF48008 75 201 4.71E-19 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_06255 4123172e1975b7d4a5320aae94c83ac3 206 SMART SM00895 79 203 2.4E-13 T 11-10-2018 IPR011711 GntR, C-terminal APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 SUPERFAMILY SSF54211 254 453 8.72E-40 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 PRINTS PR01874 DNA repair protein radA signature 173 197 1.9E-94 T 11-10-2018 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 PRINTS PR01874 DNA repair protein radA signature 123 140 1.9E-94 T 11-10-2018 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 PRINTS PR01874 DNA repair protein radA signature 247 273 1.9E-94 T 11-10-2018 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 PRINTS PR01874 DNA repair protein radA signature 212 240 1.9E-94 T 11-10-2018 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 PRINTS PR01874 DNA repair protein radA signature 321 344 1.9E-94 T 11-10-2018 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 PRINTS PR01874 DNA repair protein radA signature 10 34 1.9E-94 T 11-10-2018 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 PRINTS PR01874 DNA repair protein radA signature 82 110 1.9E-94 T 11-10-2018 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 Hamap MF_01498 DNA repair protein RadA [radA]. 21 454 43.656 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 450 5.0E-194 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 Gene3D G3DSA:3.40.50.300 65 282 3.7E-42 T 11-10-2018 APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 Gene3D G3DSA:3.30.230.10 311 454 3.2E-14 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 SUPERFAMILY SSF52540 68 288 1.24E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 SMART SM00382 90 243 2.8E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18360 4c291eb3d1b87863b7b56e156eb403b1 454 Pfam PF13481 AAA domain 83 221 1.3E-17 T 11-10-2018 APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 SUPERFAMILY SSF48300 4 62 1.7E-16 T 11-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 126 5.0E-31 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 62 99 8.0E-14 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 52 2.2E-19 T 11-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 126 6.6E-49 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 Gene3D G3DSA:1.20.5.710 3 55 7.0E-21 T 11-10-2018 APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 126 26.04 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 Gene3D G3DSA:3.30.1390.10 56 126 3.7E-31 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT56_00015 53fa3ce1e1c5fcff34ba4280c4015c5c 126 SUPERFAMILY SSF54736 55 126 1.26E-24 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT56_00700 458b12e753779ec2e93461dcd1e8d700 397 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 10 394 65.342 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 APT56_00700 458b12e753779ec2e93461dcd1e8d700 397 PIRSF PIRSF000521 18 394 7.5E-39 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_00700 458b12e753779ec2e93461dcd1e8d700 397 Gene3D G3DSA:3.90.1150.10 19 384 7.1E-128 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_00700 458b12e753779ec2e93461dcd1e8d700 397 Gene3D G3DSA:3.40.640.10 54 297 7.1E-128 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_00700 458b12e753779ec2e93461dcd1e8d700 397 Pfam PF00202 Aminotransferase class-III 20 387 2.0E-101 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_00700 458b12e753779ec2e93461dcd1e8d700 397 SUPERFAMILY SSF53383 12 391 4.21E-110 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_00700 458b12e753779ec2e93461dcd1e8d700 397 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 216 253 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 5.2E-40 T 11-10-2018 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 5.2E-40 T 11-10-2018 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 5.2E-40 T 11-10-2018 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 5.2E-40 T 11-10-2018 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 5.2E-40 T 11-10-2018 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 5.2E-40 T 11-10-2018 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 150 171 5.2E-40 T 11-10-2018 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 113 2.6E-9 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 Pfam PF00361 Proton-conducting membrane transporter 126 403 3.2E-65 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 Pfam PF13244 Domain of unknown function (DUF4040) 614 679 3.3E-19 T 11-10-2018 IPR025383 Domain of unknown function DUF4040 APT56_15290 6fb5e3ddca746fdefd0aec5ad1e853a3 971 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 819 940 1.6E-31 T 11-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein APT56_12795 d20de54523c306c21609b77214a7efb5 490 SMART SM00388 267 335 1.5E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_12795 d20de54523c306c21609b77214a7efb5 490 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 386 488 5.7E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_12795 d20de54523c306c21609b77214a7efb5 490 Gene3D G3DSA:1.10.287.130 260 335 1.7E-20 T 11-10-2018 APT56_12795 d20de54523c306c21609b77214a7efb5 490 Pfam PF00512 His Kinase A (phospho-acceptor) domain 268 335 3.8E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_12795 d20de54523c306c21609b77214a7efb5 490 SMART SM00387 381 490 2.0E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_12795 d20de54523c306c21609b77214a7efb5 490 SUPERFAMILY SSF47384 252 335 6.28E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_12795 d20de54523c306c21609b77214a7efb5 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 468 5.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_12795 d20de54523c306c21609b77214a7efb5 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 474 487 5.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_12795 d20de54523c306c21609b77214a7efb5 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 432 5.3E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_12795 d20de54523c306c21609b77214a7efb5 490 SUPERFAMILY SSF55874 325 488 3.27E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_12795 d20de54523c306c21609b77214a7efb5 490 Gene3D G3DSA:3.30.565.10 340 490 1.7E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_15235 e1611250812ae55d981b186b6f5a784a 405 Gene3D G3DSA:1.20.1250.20 19 398 2.1E-25 T 11-10-2018 APT56_15235 e1611250812ae55d981b186b6f5a784a 405 Hamap MF_01118 Uncharacterized MFS-type transporter YhhS [yhhS]. 6 400 43.858 T 11-10-2018 IPR023008 Uncharacterized MFS-type transporter YhhS-like APT56_15235 e1611250812ae55d981b186b6f5a784a 405 Pfam PF07690 Major Facilitator Superfamily 26 197 2.9E-11 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_15235 e1611250812ae55d981b186b6f5a784a 405 SUPERFAMILY SSF103473 23 398 1.44E-36 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_23645 fe1a04e07c9f43611445bf320eab255a 444 Pfam PF07690 Major Facilitator Superfamily 76 404 2.3E-15 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_23645 fe1a04e07c9f43611445bf320eab255a 444 ProSitePatterns PS00216 Sugar transport proteins signature 1. 315 332 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_23645 fe1a04e07c9f43611445bf320eab255a 444 Gene3D G3DSA:1.20.1250.20 33 444 2.0E-41 T 11-10-2018 APT56_23645 fe1a04e07c9f43611445bf320eab255a 444 SUPERFAMILY SSF103473 36 435 6.93E-39 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_24550 883093825c0be418231799c02a23ea73 432 SUPERFAMILY SSF51182 2 429 3.44E-173 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_24550 883093825c0be418231799c02a23ea73 432 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 4 429 70.63 T 11-10-2018 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5 APT56_24550 883093825c0be418231799c02a23ea73 432 Pfam PF04209 homogentisate 1,2-dioxygenase 4 427 1.2E-201 T 11-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 APT56_24550 883093825c0be418231799c02a23ea73 432 Gene3D G3DSA:2.60.120.10 261 397 1.6E-59 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_24550 883093825c0be418231799c02a23ea73 432 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 2 427 5.2E-200 T 11-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 Gene3D G3DSA:3.40.640.10 48 294 2.9E-137 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 PIRSF PIRSF000521 5 151 7.2E-12 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 PIRSF PIRSF000521 161 388 3.5E-31 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 Gene3D G3DSA:3.90.1150.10 13 379 2.9E-137 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 SUPERFAMILY SSF53383 5 385 3.89E-123 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 7 384 4.8E-135 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 212 249 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 4 388 69.888 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 APT56_08885 023c6e1b83d81cec8a78b14e73492392 393 Pfam PF00202 Aminotransferase class-III 12 382 2.2E-110 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 SUPERFAMILY SSF46785 37 108 6.23E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 SMART SM00345 45 104 9.2E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 SMART SM00895 128 255 1.0E-22 T 11-10-2018 IPR011711 GntR, C-terminal APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 Pfam PF07729 FCD domain 130 254 1.7E-25 T 11-10-2018 IPR011711 GntR, C-terminal APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 SUPERFAMILY SSF48008 125 262 8.63E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 78 1.6E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 78 94 1.6E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 Gene3D G3DSA:1.10.10.10 35 107 1.4E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 Pfam PF00392 Bacterial regulatory proteins, gntR family 42 104 1.1E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11495 006a19df08b4f880c4b1ef41c4eeaba6 267 Gene3D G3DSA:1.20.120.530 123 264 2.2E-30 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 SUPERFAMILY SSF54909 64 139 1.47E-12 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 SMART SM00344 1 107 2.9E-16 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 SUPERFAMILY SSF46785 1 57 3.8E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 Pfam PF01037 Lrp/AsnC ligand binding domain 68 136 1.1E-10 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 Gene3D G3DSA:3.30.70.920 54 141 9.3E-14 T 11-10-2018 APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 8.9E-13 T 11-10-2018 APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 Gene3D G3DSA:1.10.10.10 1 52 3.3E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.0E-10 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.0E-10 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_06230 5c92be85ba883a45675af0b48c5ff3d5 141 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.0E-10 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_12910 f88db117510d9d85b0891a77e3bc5d02 215 Gene3D G3DSA:1.20.120.700 5 153 2.2E-17 T 11-10-2018 APT56_12910 f88db117510d9d85b0891a77e3bc5d02 215 Pfam PF02613 Nitrate reductase delta subunit 33 155 3.8E-13 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone APT56_12910 f88db117510d9d85b0891a77e3bc5d02 215 SUPERFAMILY SSF89155 2 160 7.46E-36 T 11-10-2018 IPR036411 TorD-like superfamily APT56_12910 f88db117510d9d85b0891a77e3bc5d02 215 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 8 157 6.2E-37 T 11-10-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 APT56_12910 f88db117510d9d85b0891a77e3bc5d02 215 Gene3D G3DSA:1.10.4070.10 65 146 2.2E-17 T 11-10-2018 APT56_23295 17c90cb58ec8543681205227285c63f6 205 SUPERFAMILY SSF52833 51 204 6.61E-49 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_23295 17c90cb58ec8543681205227285c63f6 205 Gene3D G3DSA:3.40.30.10 48 204 1.8E-52 T 11-10-2018 APT56_23295 17c90cb58ec8543681205227285c63f6 205 Pfam PF02630 SCO1/SenC 48 187 2.7E-41 T 11-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 SUPERFAMILY SSF53383 8 414 4.13E-100 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 TIGRFAM TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase 4 415 7.1E-195 T 11-10-2018 IPR012773 Ectoine biosynthetic protein GO:0019491|GO:0030170|GO:0047307 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 Gene3D G3DSA:3.90.1150.10 10 410 5.6E-105 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 Pfam PF00202 Aminotransferase class-III 20 412 2.3E-76 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 Gene3D G3DSA:3.40.640.10 56 317 5.6E-105 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 PIRSF PIRSF000521 4 128 2.3E-5 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 PIRSF PIRSF000521 177 417 4.6E-31 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 PIRSF PIRSF000521 122 159 0.27 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_09390 d35fde87ed0303e069beda867dfa85f8 435 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 2 420 2.4E-142 T 11-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 APT56_25680 560c6b20fe0b97d20eedfe891900f760 271 Gene3D G3DSA:2.40.30.10 2 136 9.5E-44 T 11-10-2018 APT56_25680 560c6b20fe0b97d20eedfe891900f760 271 Pfam PF04954 Siderophore-interacting protein 143 261 7.5E-39 T 11-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain APT56_25680 560c6b20fe0b97d20eedfe891900f760 271 Gene3D G3DSA:3.40.50.80 137 271 4.4E-42 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_25680 560c6b20fe0b97d20eedfe891900f760 271 SUPERFAMILY SSF63380 10 138 1.32E-12 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_25680 560c6b20fe0b97d20eedfe891900f760 271 Pfam PF08021 Siderophore-interacting FAD-binding domain 21 135 1.0E-35 T 11-10-2018 IPR013113 FAD-binding 9, siderophore-interacting APT56_11825 81cfed34c5a95136b926ee361bf17054 208 SUPERFAMILY SSF52172 9 158 5.27E-37 T 11-10-2018 IPR011006 CheY-like superfamily APT56_11825 81cfed34c5a95136b926ee361bf17054 208 SMART SM00448 8 119 9.5E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 2.3E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 2.3E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 2.3E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 SUPERFAMILY SSF46894 138 200 2.55E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 Gene3D G3DSA:3.40.50.2300 4 133 8.1E-50 T 11-10-2018 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 199 5.5E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 SMART SM00421 143 200 2.3E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_11825 81cfed34c5a95136b926ee361bf17054 208 Gene3D G3DSA:1.10.10.10 134 203 6.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11825 81cfed34c5a95136b926ee361bf17054 208 Pfam PF00072 Response regulator receiver domain 10 119 8.2E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_27430 6f501a7892a897a1beecaffc1f570961 288 SUPERFAMILY SSF56219 4 285 4.06E-41 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APT56_27430 6f501a7892a897a1beecaffc1f570961 288 Gene3D G3DSA:3.60.10.10 3 288 1.4E-41 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APT56_27430 6f501a7892a897a1beecaffc1f570961 288 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 278 1.9E-15 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase APT56_24000 1552d9ac4ce6882421c655bad6278d74 256 SUPERFAMILY SSF54423 29 86 2.24E-11 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 APT56_24000 1552d9ac4ce6882421c655bad6278d74 256 Gene3D G3DSA:3.40.30.10 112 255 2.6E-37 T 11-10-2018 APT56_24000 1552d9ac4ce6882421c655bad6278d74 256 SUPERFAMILY SSF52833 95 252 2.86E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_24000 1552d9ac4ce6882421c655bad6278d74 256 Pfam PF13098 Thioredoxin-like domain 120 252 1.3E-13 T 11-10-2018 IPR012336 Thioredoxin-like fold APT56_24000 1552d9ac4ce6882421c655bad6278d74 256 Gene3D G3DSA:3.10.450.70 29 97 7.2E-18 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 APT56_15965 629e0e37dddd88c037e80820b3a72af0 271 SUPERFAMILY SSF51215 15 151 6.15E-20 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_15965 629e0e37dddd88c037e80820b3a72af0 271 Gene3D G3DSA:1.10.10.60 169 271 4.6E-25 T 11-10-2018 APT56_15965 629e0e37dddd88c037e80820b3a72af0 271 SUPERFAMILY SSF46689 168 215 3.23E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_15965 629e0e37dddd88c037e80820b3a72af0 271 Pfam PF02311 AraC-like ligand binding domain 21 148 2.1E-24 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_15965 629e0e37dddd88c037e80820b3a72af0 271 Pfam PF12833 Helix-turn-helix domain 190 268 2.6E-17 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_15965 629e0e37dddd88c037e80820b3a72af0 271 SMART SM00342 184 266 2.1E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_15965 629e0e37dddd88c037e80820b3a72af0 271 SUPERFAMILY SSF46689 220 269 6.72E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_24990 57af5ec68baf297881c502d58065a801 305 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 13 304 6.3E-120 T 11-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type APT56_24990 57af5ec68baf297881c502d58065a801 305 Pfam PF02653 Branched-chain amino acid transport system / permease component 16 291 1.5E-44 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_16335 22953dae385cd9c2eb39e6a0165209e9 655 SUPERFAMILY SSF56801 51 592 1.57E-120 T 11-10-2018 APT56_16335 22953dae385cd9c2eb39e6a0165209e9 655 ProSitePatterns PS00455 Putative AMP-binding domain signature. 238 249 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_16335 22953dae385cd9c2eb39e6a0165209e9 655 Gene3D G3DSA:3.30.300.30 490 594 3.7E-25 T 11-10-2018 APT56_16335 22953dae385cd9c2eb39e6a0165209e9 655 Pfam PF00501 AMP-binding enzyme 59 494 7.7E-74 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_16335 22953dae385cd9c2eb39e6a0165209e9 655 Gene3D G3DSA:3.40.50.12780 50 489 1.6E-88 T 11-10-2018 APT56_16335 22953dae385cd9c2eb39e6a0165209e9 655 Pfam PF13193 AMP-binding enzyme C-terminal domain 504 579 1.1E-16 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_21430 793610df48a217beebac473c474f35db 382 Pfam PF07690 Major Facilitator Superfamily 5 344 1.6E-38 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_21430 793610df48a217beebac473c474f35db 382 Gene3D G3DSA:1.20.1720.10 1 374 5.7E-103 T 11-10-2018 APT56_21430 793610df48a217beebac473c474f35db 382 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 2 374 9.2E-94 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 APT56_21430 793610df48a217beebac473c474f35db 382 SUPERFAMILY SSF103473 3 372 1.15E-54 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_19410 08ee7e1c85d71fe1e0578a880980e30c 168 Pfam PF02464 Competence-damaged protein 5 157 2.7E-37 T 11-10-2018 IPR008136 CinA, C-terminal APT56_19410 08ee7e1c85d71fe1e0578a880980e30c 168 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 9 155 3.0E-26 T 11-10-2018 IPR008136 CinA, C-terminal APT56_19410 08ee7e1c85d71fe1e0578a880980e30c 168 SUPERFAMILY SSF142433 3 159 1.07E-39 T 11-10-2018 IPR036653 CinA-like, C-terminal APT56_19410 08ee7e1c85d71fe1e0578a880980e30c 168 Gene3D G3DSA:3.90.950.20 1 160 1.0E-44 T 11-10-2018 IPR036653 CinA-like, C-terminal APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 Gene3D G3DSA:2.160.20.10 35 327 1.3E-92 T 11-10-2018 IPR012334 Pectin lyase fold APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 Pfam PF13332 Haemagluttinin repeat 2945 3119 4.7E-36 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 Pfam PF13332 Haemagluttinin repeat 2489 2631 0.0024 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 Pfam PF13332 Haemagluttinin repeat 2652 2712 6.7E-5 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 Pfam PF13332 Haemagluttinin repeat 2727 2871 3.2E-7 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 SMART SM00912 45 165 2.5E-35 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 SUPERFAMILY SSF51126 45 290 2.92E-58 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 64 160 4.0E-20 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1586 1625 2.0E-7 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2138 2174 0.19 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1545 1584 4.9E-7 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1837 1867 0.02 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1653 1692 0.006 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1712 1752 0.049 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1734 1769 0.09 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 2509 2548 0.0032 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00510 ec989bac80ac53a18f2f67406516e9e1 3803 Pfam PF05860 haemagglutination activity domain 45 162 2.3E-30 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 Gene3D G3DSA:3.30.930.10 11 468 2.2E-232 T 11-10-2018 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 SUPERFAMILY SSF55826 218 392 3.27E-33 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 SUPERFAMILY SSF52954 467 574 2.29E-29 T 11-10-2018 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 Pfam PF03129 Anticodon binding domain 478 570 4.6E-16 T 11-10-2018 IPR004154 Anticodon-binding APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.4E-17 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.4E-17 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.4E-17 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.4E-17 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 462 9.0E-46 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 566 5.2E-223 T 11-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 PIRSF PIRSF001535 1 576 6.3E-265 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 574 40.659 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 Gene3D G3DSA:3.90.960.10 240 392 2.2E-232 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 SUPERFAMILY SSF55681 10 481 5.9E-101 T 11-10-2018 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 Pfam PF04073 Aminoacyl-tRNA editing domain 257 381 3.5E-28 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT56_04125 09abcd25df4170370656c2a7ed6ed1be 576 Gene3D G3DSA:3.40.50.800 4 557 2.2E-232 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily APT56_19100 72cf83376ad4b6d44cfb117a5f0cd2a1 264 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_19100 72cf83376ad4b6d44cfb117a5f0cd2a1 264 Gene3D G3DSA:3.40.50.300 4 250 1.9E-61 T 11-10-2018 APT56_19100 72cf83376ad4b6d44cfb117a5f0cd2a1 264 Pfam PF00005 ABC transporter 28 168 1.8E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19100 72cf83376ad4b6d44cfb117a5f0cd2a1 264 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 28 256 9.1E-89 T 11-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 APT56_19100 72cf83376ad4b6d44cfb117a5f0cd2a1 264 SMART SM00382 36 218 4.4E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19100 72cf83376ad4b6d44cfb117a5f0cd2a1 264 SUPERFAMILY SSF52540 6 228 8.57E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00245 1ef9c054db82a81ec333e4b86682f27a 400 Gene3D G3DSA:3.40.630.10 15 381 7.9E-138 T 11-10-2018 APT56_00245 1ef9c054db82a81ec333e4b86682f27a 400 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 383 3.6E-110 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_00245 1ef9c054db82a81ec333e4b86682f27a 400 Pfam PF01546 Peptidase family M20/M25/M40 73 393 1.4E-37 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_00245 1ef9c054db82a81ec333e4b86682f27a 400 SUPERFAMILY SSF53187 3 397 8.75E-91 T 11-10-2018 APT56_00245 1ef9c054db82a81ec333e4b86682f27a 400 Pfam PF07687 Peptidase dimerisation domain 187 279 2.4E-12 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_00245 1ef9c054db82a81ec333e4b86682f27a 400 Gene3D G3DSA:3.30.70.360 182 296 7.9E-138 T 11-10-2018 APT56_00245 1ef9c054db82a81ec333e4b86682f27a 400 SUPERFAMILY SSF55031 184 297 3.01E-30 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_00245 1ef9c054db82a81ec333e4b86682f27a 400 PIRSF PIRSF005962 1 400 5.5E-125 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.4E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.4E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.4E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.4E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.4E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.4E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_25825 1d59cb2f6103a095192faa49407382b8 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 8.3E-6 T 11-10-2018 APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25825 1d59cb2f6103a095192faa49407382b8 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 5.7E-70 T 11-10-2018 APT56_25825 1d59cb2f6103a095192faa49407382b8 245 Gene3D G3DSA:3.40.50.720 1 244 3.0E-83 T 11-10-2018 APT56_25825 1d59cb2f6103a095192faa49407382b8 245 SUPERFAMILY SSF51735 5 244 2.69E-84 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19320 989f2fd537e6b183b5d36638f7645241 233 Gene3D G3DSA:3.90.550.10 1 205 1.0E-19 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_19320 989f2fd537e6b183b5d36638f7645241 233 Pfam PF00535 Glycosyl transferase family 2 4 106 1.6E-9 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_19320 989f2fd537e6b183b5d36638f7645241 233 SUPERFAMILY SSF53448 2 207 6.56E-26 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_12975 ca58d348a407c6c87b3e3579b0d7606a 379 Gene3D G3DSA:3.90.1150.10 14 370 2.2E-91 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_12975 ca58d348a407c6c87b3e3579b0d7606a 379 Gene3D G3DSA:3.40.640.10 29 287 2.2E-91 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_12975 ca58d348a407c6c87b3e3579b0d7606a 379 Pfam PF00266 Aminotransferase class-V 59 343 2.7E-46 T 11-10-2018 IPR000192 Aminotransferase class V domain APT56_12975 ca58d348a407c6c87b3e3579b0d7606a 379 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 199 219 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APT56_12975 ca58d348a407c6c87b3e3579b0d7606a 379 SUPERFAMILY SSF53383 3 373 1.26E-76 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_06820 ab46583369dff773da4cc36d398996c3 358 Gene3D G3DSA:2.50.20.10 54 230 1.6E-53 T 11-10-2018 APT56_06820 ab46583369dff773da4cc36d398996c3 358 Gene3D G3DSA:3.30.200.100 251 348 5.4E-16 T 11-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily APT56_06820 ab46583369dff773da4cc36d398996c3 358 Pfam PF03888 MucB/RseB N-terminal domain 56 229 4.0E-59 T 11-10-2018 IPR033434 MucB/RseB, N-terminal APT56_06820 ab46583369dff773da4cc36d398996c3 358 PIRSF PIRSF005427 19 351 3.9E-98 T 11-10-2018 IPR005588 MucB/RseB APT56_06820 ab46583369dff773da4cc36d398996c3 358 Pfam PF17188 MucB/RseB C-terminal domain 251 344 1.0E-24 T 11-10-2018 IPR033436 MucB/RseB, C-terminal APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 SUPERFAMILY SSF52467 195 378 1.11E-41 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 SUPERFAMILY SSF52518 14 195 1.42E-49 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 SUPERFAMILY SSF52518 396 596 2.47E-52 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 Gene3D G3DSA:3.40.50.970 392 581 6.1E-54 T 11-10-2018 APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 205 342 3.8E-32 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 TIGRFAM TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase 19 594 1.5E-282 T 11-10-2018 IPR017820 Sulphoacetaldehyde acetyltransferase GO:0000287|GO:0005737|GO:0019529|GO:0030976|GO:0050487 KEGG: 00430+2.3.3.15|MetaCyc: PWY-1281|MetaCyc: PWY-6637 APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 Gene3D G3DSA:3.40.50.970 11 191 1.1E-55 T 11-10-2018 APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 Gene3D G3DSA:3.40.50.1220 199 384 1.9E-48 T 11-10-2018 APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 20 185 1.4E-48 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_12610 9325edcb20cb12e2812ce7973b740fab 616 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 419 567 5.8E-37 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_24425 75471db8eda0981a749b626c3995b257 167 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 35.393 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APT56_24425 75471db8eda0981a749b626c3995b257 167 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 58 4.7E-15 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT56_24425 75471db8eda0981a749b626c3995b257 167 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 156 2.2E-56 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APT56_24425 75471db8eda0981a749b626c3995b257 167 SUPERFAMILY SSF52374 1 156 1.41E-43 T 11-10-2018 APT56_24425 75471db8eda0981a749b626c3995b257 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 3.6E-48 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APT56_24425 75471db8eda0981a749b626c3995b257 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 3.6E-48 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APT56_24425 75471db8eda0981a749b626c3995b257 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 3.6E-48 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APT56_24425 75471db8eda0981a749b626c3995b257 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 3.6E-48 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APT56_24425 75471db8eda0981a749b626c3995b257 167 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 3.6E-48 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APT56_24425 75471db8eda0981a749b626c3995b257 167 Pfam PF01467 Cytidylyltransferase-like 5 133 3.6E-19 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT56_24425 75471db8eda0981a749b626c3995b257 167 Gene3D G3DSA:3.40.50.620 1 165 1.6E-56 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_15555 76cdba0a659b0e91d0cff75fae4a88bb 157 Pfam PF12802 MarR family 35 94 2.3E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_15555 76cdba0a659b0e91d0cff75fae4a88bb 157 SMART SM00347 29 130 1.2E-17 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_15555 76cdba0a659b0e91d0cff75fae4a88bb 157 Gene3D G3DSA:1.10.10.10 1 145 3.2E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15555 76cdba0a659b0e91d0cff75fae4a88bb 157 SUPERFAMILY SSF46785 8 144 5.93E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15555 76cdba0a659b0e91d0cff75fae4a88bb 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 1.0E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_15555 76cdba0a659b0e91d0cff75fae4a88bb 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 1.0E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_15555 76cdba0a659b0e91d0cff75fae4a88bb 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 1.0E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09740 c5f95723ae7ae17d1c29b2e00f7e5131 232 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 77 149 2.2E-10 T 11-10-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted APT56_09740 c5f95723ae7ae17d1c29b2e00f7e5131 232 Gene3D G3DSA:3.10.620.30 37 231 4.0E-65 T 11-10-2018 APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 Gene3D G3DSA:1.10.10.10 1 82 1.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 Pfam PF03466 LysR substrate binding domain 84 263 3.1E-35 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 SUPERFAMILY SSF53850 86 263 1.36E-32 T 11-10-2018 APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 1.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 1.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 1.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.2E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 SUPERFAMILY SSF46785 5 108 6.67E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02565 3502d0797f5dfca55d86a043bd0012b2 291 Gene3D G3DSA:3.40.190.290 88 268 5.1E-34 T 11-10-2018 APT56_04110 5c0343fff7cafb8dcbbf041480ba4d9a 152 Gene3D G3DSA:3.30.420.270 61 135 2.1E-10 T 11-10-2018 APT56_04110 5c0343fff7cafb8dcbbf041480ba4d9a 152 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 138 1.6E-26 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 APT56_11340 29ee755d8ae53162d83b170215a561e6 867 Pfam PF01804 Penicillin amidase 50 854 1.1E-148 T 11-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 APT56_11340 29ee755d8ae53162d83b170215a561e6 867 Gene3D G3DSA:3.60.20.10 311 841 3.6E-217 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_11340 29ee755d8ae53162d83b170215a561e6 867 Gene3D G3DSA:2.30.120.10 383 455 3.6E-217 T 11-10-2018 APT56_11340 29ee755d8ae53162d83b170215a561e6 867 PIRSF PIRSF001227 6 864 1.7E-113 T 11-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 APT56_11340 29ee755d8ae53162d83b170215a561e6 867 SUPERFAMILY SSF56235 49 865 2.83E-210 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_11340 29ee755d8ae53162d83b170215a561e6 867 Gene3D G3DSA:1.10.439.10 48 193 2.1E-51 T 11-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 APT56_11340 29ee755d8ae53162d83b170215a561e6 867 Gene3D G3DSA:1.10.1400.10 605 765 3.6E-217 T 11-10-2018 APT56_11340 29ee755d8ae53162d83b170215a561e6 867 Gene3D G3DSA:1.10.287.150 194 253 5.9E-24 T 11-10-2018 APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 Gene3D G3DSA:1.10.10.10 1 93 1.6E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 Gene3D G3DSA:3.40.190.10 163 266 5.9E-44 T 11-10-2018 APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 Pfam PF03466 LysR substrate binding domain 87 288 4.2E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.2E-23 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 SUPERFAMILY SSF46785 1 87 1.19E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 SUPERFAMILY SSF53850 87 294 2.17E-34 T 11-10-2018 APT56_02105 a1e639e0aee850ff443e4ca6c71651d0 296 Gene3D G3DSA:3.40.190.10 95 284 5.9E-44 T 11-10-2018 APT56_25890 74a3748761590c18f188eb27fc97d1e5 621 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 512 523 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_25890 74a3748761590c18f188eb27fc97d1e5 621 Gene3D G3DSA:3.50.30.80 424 576 1.8E-56 T 11-10-2018 APT56_25890 74a3748761590c18f188eb27fc97d1e5 621 Pfam PF00920 Dehydratase family 34 610 2.4E-217 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_25890 74a3748761590c18f188eb27fc97d1e5 621 SUPERFAMILY SSF143975 3 423 6.67E-131 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_25890 74a3748761590c18f188eb27fc97d1e5 621 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 613 44.799 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_25890 74a3748761590c18f188eb27fc97d1e5 621 SUPERFAMILY SSF52016 424 616 5.65E-61 T 11-10-2018 APT56_25890 74a3748761590c18f188eb27fc97d1e5 621 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 613 3.1E-251 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_25890 74a3748761590c18f188eb27fc97d1e5 621 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Gene3D G3DSA:1.25.40.10 35 209 3.9E-44 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Gene3D G3DSA:1.25.40.10 210 328 1.3E-35 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SUPERFAMILY SSF81901 211 324 1.57E-27 T 11-10-2018 APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Pfam PF08238 Sel1 repeat 211 243 7.0E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Pfam PF08238 Sel1 repeat 283 316 4.0E-4 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Pfam PF08238 Sel1 repeat 103 136 0.16 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Pfam PF08238 Sel1 repeat 175 207 7.9E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Pfam PF08238 Sel1 repeat 250 280 3.0E-7 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Pfam PF08238 Sel1 repeat 61 100 0.001 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 Pfam PF08238 Sel1 repeat 137 172 7.8E-7 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SUPERFAMILY SSF81901 50 217 2.18E-36 T 11-10-2018 APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SMART SM00671 281 316 1.6E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SMART SM00671 173 208 2.6E-8 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SMART SM00671 101 136 0.03 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SMART SM00671 245 280 8.9E-6 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SMART SM00671 209 244 1.2E-9 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SMART SM00671 137 172 3.4E-9 T 11-10-2018 IPR006597 Sel1-like repeat APT56_01120 053d0f0a6bb2f4e1cc571a24acdbe510 329 SMART SM00671 61 100 0.0078 T 11-10-2018 IPR006597 Sel1-like repeat APT56_04460 91736684732b9082551862e3bab3cdca 566 ProSitePatterns PS00455 Putative AMP-binding domain signature. 210 221 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_04460 91736684732b9082551862e3bab3cdca 566 SUPERFAMILY SSF56801 21 557 8.37E-148 T 11-10-2018 APT56_04460 91736684732b9082551862e3bab3cdca 566 Gene3D G3DSA:3.30.300.310 460 560 4.3E-31 T 11-10-2018 APT56_04460 91736684732b9082551862e3bab3cdca 566 Gene3D G3DSA:3.40.50.12780 12 459 4.6E-113 T 11-10-2018 APT56_04460 91736684732b9082551862e3bab3cdca 566 Pfam PF00501 AMP-binding enzyme 30 463 6.5E-107 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_04460 91736684732b9082551862e3bab3cdca 566 Pfam PF13193 AMP-binding enzyme C-terminal domain 472 546 1.3E-19 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_19260 2dce4ba3ae1b232be42519b25f66d358 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 293 1.4E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_19260 2dce4ba3ae1b232be42519b25f66d358 294 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 60 4.0E-6 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_19260 2dce4ba3ae1b232be42519b25f66d358 294 Gene3D G3DSA:1.10.3720.10 84 289 4.6E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19260 2dce4ba3ae1b232be42519b25f66d358 294 SUPERFAMILY SSF161098 88 277 8.9E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22425 2c96b237348ca32777784980cf266d06 398 Pfam PF01979 Amidohydrolase family 285 366 5.9E-7 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_22425 2c96b237348ca32777784980cf266d06 398 SUPERFAMILY SSF51338 17 381 3.65E-8 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_22425 2c96b237348ca32777784980cf266d06 398 SUPERFAMILY SSF51556 60 349 1.65E-12 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_22425 2c96b237348ca32777784980cf266d06 398 Gene3D G3DSA:3.20.20.140 316 344 3.5E-7 T 11-10-2018 APT56_22425 2c96b237348ca32777784980cf266d06 398 PIRSF PIRSF038971 11 383 6.8E-105 T 11-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_22425 2c96b237348ca32777784980cf266d06 398 Gene3D G3DSA:2.30.40.10 345 365 3.5E-7 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_24485 d882242c52e1a8fc7a39ed80afd6f996 198 SUPERFAMILY SSF53178 5 193 6.15E-66 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 APT56_24485 d882242c52e1a8fc7a39ed80afd6f996 198 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 6 192 6.9E-59 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APT56_24485 d882242c52e1a8fc7a39ed80afd6f996 198 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 112 122 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 APT56_24485 d882242c52e1a8fc7a39ed80afd6f996 198 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 5 186 35.285 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APT56_24485 d882242c52e1a8fc7a39ed80afd6f996 198 Gene3D G3DSA:3.40.50.1470 5 197 3.9E-69 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 APT56_24485 d882242c52e1a8fc7a39ed80afd6f996 198 Pfam PF01195 Peptidyl-tRNA hydrolase 7 188 5.8E-57 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APT56_24485 d882242c52e1a8fc7a39ed80afd6f996 198 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 18 31 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 APT56_25640 406887c963f4538e2d778fdc6c24e778 396 SUPERFAMILY SSF103473 2 383 4.58E-58 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_25640 406887c963f4538e2d778fdc6c24e778 396 Pfam PF07690 Major Facilitator Superfamily 23 347 9.9E-33 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_25640 406887c963f4538e2d778fdc6c24e778 396 Gene3D G3DSA:1.20.1250.20 2 379 1.9E-46 T 11-10-2018 APT56_23905 d047f78b713fa47a3029c0bb24e25f03 132 Gene3D G3DSA:2.30.30.240 16 103 7.5E-25 T 11-10-2018 APT56_23905 d047f78b713fa47a3029c0bb24e25f03 132 SUPERFAMILY SSF50346 17 132 1.35E-26 T 11-10-2018 IPR011033 PRC-barrel-like superfamily APT56_23905 d047f78b713fa47a3029c0bb24e25f03 132 Pfam PF05239 PRC-barrel domain 21 98 5.2E-16 T 11-10-2018 IPR027275 PRC-barrel domain APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 580 691 1.5E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SMART SM00388 465 533 1.6E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SMART SM00387 580 692 2.8E-37 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Gene3D G3DSA:3.40.50.12740 1008 1134 3.0E-43 T 11-10-2018 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Gene3D G3DSA:3.40.50.12740 740 860 2.2E-26 T 11-10-2018 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Pfam PF00512 His Kinase A (phospho-acceptor) domain 466 533 1.7E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 PRINTS PR00344 Bacterial sensor protein C-terminal signature 676 689 6.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 670 6.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 PRINTS PR00344 Bacterial sensor protein C-terminal signature 617 631 6.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 PRINTS PR00344 Bacterial sensor protein C-terminal signature 635 645 6.3E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Gene3D G3DSA:1.20.1440.210 52 179 2.1E-26 T 11-10-2018 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Pfam PF00072 Response regulator receiver domain 1011 1128 5.7E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Pfam PF00072 Response regulator receiver domain 743 851 4.2E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Pfam PF00072 Response regulator receiver domain 865 975 3.1E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SUPERFAMILY SSF52172 863 985 4.7E-22 T 11-10-2018 IPR011006 CheY-like superfamily APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SUPERFAMILY SSF52172 1007 1133 1.99E-38 T 11-10-2018 IPR011006 CheY-like superfamily APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Pfam PF05227 CHASE3 domain 48 181 9.2E-29 T 11-10-2018 IPR007891 CHASE3 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SMART SM00448 741 851 9.1E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SMART SM00448 1009 1128 5.7E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SMART SM00448 863 977 2.0E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SUPERFAMILY SSF52172 741 857 1.71E-26 T 11-10-2018 IPR011006 CheY-like superfamily APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SUPERFAMILY SSF55781 215 373 1.03E-12 T 11-10-2018 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Gene3D G3DSA:3.30.450.40 216 392 7.5E-12 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Pfam PF13185 GAF domain 240 373 7.4E-12 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Gene3D G3DSA:3.30.565.10 532 695 3.9E-47 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SUPERFAMILY SSF47384 453 534 1.2E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Gene3D G3DSA:1.10.287.130 418 531 4.7E-24 T 11-10-2018 APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 SUPERFAMILY SSF55874 522 690 8.64E-45 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_24090 d0f0c74f067d7b4d3234f624a30f7f7d 1134 Gene3D G3DSA:3.40.50.2300 861 995 6.6E-22 T 11-10-2018 APT56_27600 33db2daa129bc7ffaf868e16ef830bba 109 SMART SM01219 1 108 1.9E-37 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_27600 33db2daa129bc7ffaf868e16ef830bba 109 ProSitePatterns PS01344 Frataxin family signature. 52 66 - T 11-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_27600 33db2daa129bc7ffaf868e16ef830bba 109 Gene3D G3DSA:3.30.920.10 1 108 2.3E-34 T 11-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_27600 33db2daa129bc7ffaf868e16ef830bba 109 SUPERFAMILY SSF55387 1 107 6.63E-29 T 11-10-2018 APT56_27600 33db2daa129bc7ffaf868e16ef830bba 109 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 107 23.577 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_27600 33db2daa129bc7ffaf868e16ef830bba 109 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 106 1.6E-33 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_27600 33db2daa129bc7ffaf868e16ef830bba 109 Pfam PF01491 Frataxin-like domain 1 103 3.6E-21 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_06140 b1a0d3ad49cbf1eec480b8d580040f85 947 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 930 947 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_06140 b1a0d3ad49cbf1eec480b8d580040f85 947 Pfam PF07715 TonB-dependent Receptor Plug Domain 115 219 5.0E-15 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_06140 b1a0d3ad49cbf1eec480b8d580040f85 947 SUPERFAMILY SSF56935 113 947 4.35E-75 T 11-10-2018 APT56_06140 b1a0d3ad49cbf1eec480b8d580040f85 947 Pfam PF07660 Secretin and TonB N terminus short domain 49 90 6.9E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_06140 b1a0d3ad49cbf1eec480b8d580040f85 947 Gene3D G3DSA:2.170.130.10 111 234 1.9E-34 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_06140 b1a0d3ad49cbf1eec480b8d580040f85 947 Gene3D G3DSA:3.55.50.30 20 92 1.4E-24 T 11-10-2018 APT56_06140 b1a0d3ad49cbf1eec480b8d580040f85 947 Pfam PF00593 TonB dependent receptor 378 945 8.7E-35 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_06140 b1a0d3ad49cbf1eec480b8d580040f85 947 SMART SM00965 42 93 1.9E-11 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_04910 1ea383f170e6a535ee1dd4f51d024ce3 325 Gene3D G3DSA:3.40.190.10 126 249 4.2E-114 T 11-10-2018 APT56_04910 1ea383f170e6a535ee1dd4f51d024ce3 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 321 3.6E-90 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04910 1ea383f170e6a535ee1dd4f51d024ce3 325 Gene3D G3DSA:3.40.190.150 28 315 4.2E-114 T 11-10-2018 APT56_04910 1ea383f170e6a535ee1dd4f51d024ce3 325 PIRSF PIRSF017082 1 325 6.8E-85 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04910 1ea383f170e6a535ee1dd4f51d024ce3 325 SUPERFAMILY SSF53850 115 285 2.17E-12 T 11-10-2018 APT56_26090 012b10cec653c03395a5a0941894448d 181 Pfam PF06073 Bacterial protein of unknown function (DUF934) 70 178 3.9E-34 T 11-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 APT56_26090 012b10cec653c03395a5a0941894448d 181 PIRSF PIRSF030820 17 181 2.2E-48 T 11-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 APT56_24835 6fc13a5924d13ae3438b51160667b6f0 362 ProSitePatterns PS01215 Mrp family signature. 202 218 - T 11-10-2018 IPR000808 Mrp, conserved site GO:0005524 APT56_24835 6fc13a5924d13ae3438b51160667b6f0 362 SUPERFAMILY SSF52540 89 323 3.82E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24835 6fc13a5924d13ae3438b51160667b6f0 362 SUPERFAMILY SSF117916 6 84 2.49E-8 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily APT56_24835 6fc13a5924d13ae3438b51160667b6f0 362 Pfam PF01883 Iron-sulfur cluster assembly protein 8 77 6.8E-13 T 11-10-2018 IPR002744 MIP18 family-like APT56_24835 6fc13a5924d13ae3438b51160667b6f0 362 Hamap MF_02040 Iron-sulfur cluster carrier protein. 91 339 37.691 T 11-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein APT56_24835 6fc13a5924d13ae3438b51160667b6f0 362 Gene3D G3DSA:3.40.50.300 84 337 2.8E-85 T 11-10-2018 APT56_24835 6fc13a5924d13ae3438b51160667b6f0 362 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 95 338 2.6E-102 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 APT56_03160 a9bee00c0aec564652d33952ef0ee3db 195 SUPERFAMILY SSF143456 15 195 5.63E-60 T 11-10-2018 APT56_03160 a9bee00c0aec564652d33952ef0ee3db 195 Gene3D G3DSA:3.40.1740.10 9 195 2.8E-64 T 11-10-2018 APT56_03160 a9bee00c0aec564652d33952ef0ee3db 195 Pfam PF02622 Uncharacterized ACR, COG1678 25 182 1.8E-44 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 APT56_03160 a9bee00c0aec564652d33952ef0ee3db 195 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 14 195 37.516 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 SUPERFAMILY SSF54909 73 158 1.14E-12 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 Pfam PF13412 Winged helix-turn-helix DNA-binding 11 57 6.9E-18 T 11-10-2018 APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 Gene3D G3DSA:1.10.10.10 12 63 3.9E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 SMART SM00344 11 120 8.8E-32 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 Gene3D G3DSA:3.30.70.920 64 148 8.2E-17 T 11-10-2018 APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 SUPERFAMILY SSF46785 10 95 1.09E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 7.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 7.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 7.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_01480 e033ad4d88e40d324fa1590197f541ad 162 Pfam PF01037 Lrp/AsnC ligand binding domain 77 149 1.2E-14 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_20930 fcc08bb7ed7e09433da07559e30e06df 476 Gene3D G3DSA:1.20.1600.10 47 458 4.9E-117 T 11-10-2018 APT56_20930 fcc08bb7ed7e09433da07559e30e06df 476 SUPERFAMILY SSF56954 2 461 9.02E-93 T 11-10-2018 APT56_20930 fcc08bb7ed7e09433da07559e30e06df 476 Pfam PF02321 Outer membrane efflux protein 273 456 1.7E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_20930 fcc08bb7ed7e09433da07559e30e06df 476 Pfam PF02321 Outer membrane efflux protein 58 237 5.2E-16 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_20930 fcc08bb7ed7e09433da07559e30e06df 476 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 4 458 1.8E-99 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_20930 fcc08bb7ed7e09433da07559e30e06df 476 Gene3D G3DSA:2.20.200.10 94 347 4.9E-117 T 11-10-2018 APT56_07415 cb8b915f66c066e43f64d7cc4e6a5d00 156 Pfam PF08909 Domain of unknown function (DUF1854) 26 155 2.3E-52 T 11-10-2018 IPR015005 Domain of unknown function DUF1854 APT56_11125 35b381f337729aff563ba6f3adabd1da 106 SUPERFAMILY SSF47413 36 92 2.36E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_16830 d0b4be3584d616dd2a8a238b226b5c29 300 Gene3D G3DSA:1.10.3720.10 87 299 6.4E-29 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16830 d0b4be3584d616dd2a8a238b226b5c29 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 12 58 1.1E-10 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_16830 d0b4be3584d616dd2a8a238b226b5c29 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 299 4.1E-35 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_16830 d0b4be3584d616dd2a8a238b226b5c29 300 SUPERFAMILY SSF161098 92 284 7.72E-31 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 Gene3D G3DSA:3.40.190.10 37 313 4.5E-83 T 11-10-2018 APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 153 167 7.6E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 39 55 7.6E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 99 112 7.6E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 251 270 7.6E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 55 76 7.6E-9 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 SUPERFAMILY SSF53850 29 347 3.73E-58 T 11-10-2018 APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 Gene3D G3DSA:3.40.190.10 138 329 4.5E-83 T 11-10-2018 APT56_21685 d2b99d66c302f9c98bd126b4961c591e 351 Pfam PF13416 Bacterial extracellular solute-binding protein 49 312 7.2E-28 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_15960 1cdc9da35aea76d7044ec6462706a057 430 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 179 1.1E-12 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_15960 1cdc9da35aea76d7044ec6462706a057 430 Pfam PF08281 Sigma-70, region 4 129 178 1.6E-9 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_15960 1cdc9da35aea76d7044ec6462706a057 430 SUPERFAMILY SSF88659 118 179 1.07E-10 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_15960 1cdc9da35aea76d7044ec6462706a057 430 SUPERFAMILY SSF88946 9 80 1.84E-11 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_15960 1cdc9da35aea76d7044ec6462706a057 430 Gene3D G3DSA:1.10.1740.10 2 80 8.4E-7 T 11-10-2018 APT56_15960 1cdc9da35aea76d7044ec6462706a057 430 Pfam PF04542 Sigma-70 region 2 29 80 3.1E-8 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_15960 1cdc9da35aea76d7044ec6462706a057 430 Gene3D G3DSA:1.10.10.10 100 182 7.3E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 Pfam PF01037 Lrp/AsnC ligand binding domain 69 142 3.5E-19 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 Gene3D G3DSA:3.30.70.920 56 139 8.2E-22 T 11-10-2018 APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 3.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 3.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 3.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 Pfam PF13404 AsnC-type helix-turn-helix domain 3 44 6.3E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 SUPERFAMILY SSF46785 2 62 4.85E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 Gene3D G3DSA:1.10.10.10 4 54 2.2E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 SUPERFAMILY SSF54909 65 151 1.47E-17 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_26170 b0cbfbdfaa9302f2d698d4d54a79b4e5 158 SMART SM00344 3 112 2.8E-32 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_08630 05a0e512f3f5ff36031b849c02cec7b9 340 Gene3D G3DSA:1.10.443.10 136 318 3.3E-24 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APT56_08630 05a0e512f3f5ff36031b849c02cec7b9 340 Pfam PF00589 Phage integrase family 140 303 6.5E-16 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT56_08630 05a0e512f3f5ff36031b849c02cec7b9 340 Gene3D G3DSA:1.10.150.130 12 121 8.1E-6 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APT56_08630 05a0e512f3f5ff36031b849c02cec7b9 340 SUPERFAMILY SSF56349 15 309 1.18E-35 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 Gene3D G3DSA:3.40.50.720 1 260 4.9E-83 T 11-10-2018 APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 258 6.9E-58 T 11-10-2018 APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 5 259 7.0E-106 T 11-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 SUPERFAMILY SSF51735 3 259 1.03E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 7.2E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 7.2E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 7.2E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 7.2E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 7.2E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05860 3fb3d4995347aba89df5155a1f5acb75 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 7.2E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25965 2d843fa5b8cdfe30df8668fb528c946a 91 Gene3D G3DSA:3.30.70.1060 1 91 1.0E-37 T 11-10-2018 APT56_25965 2d843fa5b8cdfe30df8668fb528c946a 91 Pfam PF02426 Muconolactone delta-isomerase 1 89 9.9E-42 T 11-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 APT56_25965 2d843fa5b8cdfe30df8668fb528c946a 91 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 8.0E-13 T 11-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 APT56_25965 2d843fa5b8cdfe30df8668fb528c946a 91 SUPERFAMILY SSF54909 1 91 3.0E-38 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_25965 2d843fa5b8cdfe30df8668fb528c946a 91 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 2.7E-49 T 11-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 APT56_25965 2d843fa5b8cdfe30df8668fb528c946a 91 PIRSF PIRSF001486 1 91 8.2E-46 T 11-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 APT56_02800 405f1a75ce893afb435eda58c6bc3042 367 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 175 361 7.5E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_02800 405f1a75ce893afb435eda58c6bc3042 367 Gene3D G3DSA:1.10.3720.10 149 366 5.3E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02800 405f1a75ce893afb435eda58c6bc3042 367 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 157 253 2.1E-18 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_02800 405f1a75ce893afb435eda58c6bc3042 367 SUPERFAMILY SSF161098 156 347 1.96E-41 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20215 dd5107560b4c299b322e4256b541625b 923 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 556 670 9.3E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_20215 dd5107560b4c299b322e4256b541625b 923 Gene3D G3DSA:3.30.450.20 323 433 5.9E-5 T 11-10-2018 APT56_20215 dd5107560b4c299b322e4256b541625b 923 Gene3D G3DSA:3.40.50.2300 797 922 3.9E-33 T 11-10-2018 APT56_20215 dd5107560b4c299b322e4256b541625b 923 SMART SM00388 444 509 3.5E-21 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20215 dd5107560b4c299b322e4256b541625b 923 PRINTS PR00344 Bacterial sensor protein C-terminal signature 615 625 8.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20215 dd5107560b4c299b322e4256b541625b 923 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 611 8.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20215 dd5107560b4c299b322e4256b541625b 923 PRINTS PR00344 Bacterial sensor protein C-terminal signature 632 650 8.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20215 dd5107560b4c299b322e4256b541625b 923 PRINTS PR00344 Bacterial sensor protein C-terminal signature 656 669 8.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20215 dd5107560b4c299b322e4256b541625b 923 SUPERFAMILY SSF52172 803 919 1.05E-33 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20215 dd5107560b4c299b322e4256b541625b 923 SMART SM00387 556 672 2.1E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_20215 dd5107560b4c299b322e4256b541625b 923 Gene3D G3DSA:1.10.287.130 434 509 4.7E-21 T 11-10-2018 APT56_20215 dd5107560b4c299b322e4256b541625b 923 SUPERFAMILY SSF47384 428 510 1.63E-18 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_20215 dd5107560b4c299b322e4256b541625b 923 SMART SM00448 804 915 6.9E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20215 dd5107560b4c299b322e4256b541625b 923 Gene3D G3DSA:3.30.565.10 510 676 4.1E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20215 dd5107560b4c299b322e4256b541625b 923 SUPERFAMILY SSF55874 499 672 1.57E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20215 dd5107560b4c299b322e4256b541625b 923 Pfam PF00512 His Kinase A (phospho-acceptor) domain 444 509 7.8E-17 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_20215 dd5107560b4c299b322e4256b541625b 923 Pfam PF00072 Response regulator receiver domain 806 913 1.4E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 521 527 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 SUPERFAMILY SSF56784 518 820 2.12E-53 T 11-10-2018 IPR036412 HAD-like superfamily APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 Pfam PF00403 Heavy-metal-associated domain 132 188 2.8E-5 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 Gene3D G3DSA:2.70.150.20 311 422 1.4E-38 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 Gene3D G3DSA:3.40.50.1000 500 773 6.3E-81 T 11-10-2018 IPR023214 HAD superfamily APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 SUPERFAMILY SSF81665 268 511 6.28E-15 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 Pfam PF00122 E1-E2 ATPase 318 499 2.2E-56 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 Gene3D G3DSA:3.40.1110.10 530 652 6.3E-81 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 Gene3D G3DSA:3.30.70.100 130 196 3.6E-6 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 519 533 4.7E-24 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 667 677 4.7E-24 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 368 382 4.7E-24 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 720 739 4.7E-24 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 744 756 4.7E-24 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 SUPERFAMILY SSF81653 320 418 4.18E-25 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 SUPERFAMILY SSF55008 127 195 3.79E-11 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 267 823 6.6E-178 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 249 823 5.0E-122 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 Pfam PF00702 haloacid dehalogenase-like hydrolase 516 734 6.3E-40 T 11-10-2018 APT56_11530 f620ac63faa6606d55b4541f926fccc5 831 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 290 804 7.4E-75 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 SUPERFAMILY SSF55021 410 503 7.1E-25 T 11-10-2018 APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 307 3.4E-76 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 Gene3D G3DSA:3.40.50.1100 12 318 2.6E-131 T 11-10-2018 APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 SUPERFAMILY SSF53686 3 356 2.75E-94 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 421 503 1.5E-20 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 321 409 1.5E-24 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 2 503 6.5E-233 T 11-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 Gene3D G3DSA:3.40.50.1100 48 147 2.6E-131 T 11-10-2018 APT56_13435 afb64ba3c4fd3a251c282119d9e70f09 504 Gene3D G3DSA:3.40.1020.10 329 504 2.0E-69 T 11-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_14055 e62a89d436a37278e9e83d21ddc3fd0c 330 Gene3D G3DSA:3.40.50.300 18 330 6.6E-102 T 11-10-2018 APT56_14055 e62a89d436a37278e9e83d21ddc3fd0c 330 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_14055 e62a89d436a37278e9e83d21ddc3fd0c 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 3.1E-27 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_14055 e62a89d436a37278e9e83d21ddc3fd0c 330 SUPERFAMILY SSF52540 20 263 7.02E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14055 e62a89d436a37278e9e83d21ddc3fd0c 330 SMART SM00382 50 241 8.3E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14055 e62a89d436a37278e9e83d21ddc3fd0c 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 308 5.2E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_14055 e62a89d436a37278e9e83d21ddc3fd0c 330 Pfam PF00005 ABC transporter 42 191 1.9E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_09510 d42c10ebfab2be0664ed403379db0ca4 166 SUPERFAMILY SSF47413 22 64 1.91E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_09510 d42c10ebfab2be0664ed403379db0ca4 166 Gene3D G3DSA:1.10.260.40 19 102 1.2E-21 T 11-10-2018 APT56_09510 d42c10ebfab2be0664ed403379db0ca4 166 Pfam PF13413 Helix-turn-helix domain 26 85 1.2E-19 T 11-10-2018 APT56_11980 46c9229367814e6be79d5f765092d384 135 PIRSF PIRSF002889 1 135 2.6E-44 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 APT56_11980 46c9229367814e6be79d5f765092d384 135 Pfam PF00460 Flagella basal body rod protein 16 39 3.1E-9 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 APT56_11980 46c9229367814e6be79d5f765092d384 135 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 134 9.5E-40 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 APT56_11715 c6f6b78200c6a160c798181849cc3687 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11715 c6f6b78200c6a160c798181849cc3687 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11715 c6f6b78200c6a160c798181849cc3687 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11715 c6f6b78200c6a160c798181849cc3687 300 Pfam PF03466 LysR substrate binding domain 87 291 9.3E-30 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11715 c6f6b78200c6a160c798181849cc3687 300 SUPERFAMILY SSF46785 3 79 2.47E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11715 c6f6b78200c6a160c798181849cc3687 300 SUPERFAMILY SSF53850 87 293 9.93E-28 T 11-10-2018 APT56_11715 c6f6b78200c6a160c798181849cc3687 300 Gene3D G3DSA:1.10.10.10 1 85 1.5E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11715 c6f6b78200c6a160c798181849cc3687 300 Gene3D G3DSA:3.40.190.10 91 276 8.7E-26 T 11-10-2018 APT56_11715 c6f6b78200c6a160c798181849cc3687 300 Gene3D G3DSA:3.40.190.10 164 265 8.7E-26 T 11-10-2018 APT56_11715 c6f6b78200c6a160c798181849cc3687 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.2E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15435 b3d46373b3a2f9af9a1ab4a86ec45b98 362 Pfam PF08402 TOBE domain 283 347 8.4E-9 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_15435 b3d46373b3a2f9af9a1ab4a86ec45b98 362 SUPERFAMILY SSF50331 242 355 2.92E-18 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_15435 b3d46373b3a2f9af9a1ab4a86ec45b98 362 Gene3D G3DSA:2.40.50.940 229 353 1.5E-16 T 11-10-2018 APT56_15435 b3d46373b3a2f9af9a1ab4a86ec45b98 362 SMART SM00382 33 217 4.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15435 b3d46373b3a2f9af9a1ab4a86ec45b98 362 Pfam PF00005 ABC transporter 27 167 1.3E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15435 b3d46373b3a2f9af9a1ab4a86ec45b98 362 Gene3D G3DSA:3.40.50.300 7 228 2.5E-50 T 11-10-2018 APT56_15435 b3d46373b3a2f9af9a1ab4a86ec45b98 362 Gene3D G3DSA:2.40.50.140 290 347 1.5E-16 T 11-10-2018 APT56_15435 b3d46373b3a2f9af9a1ab4a86ec45b98 362 SUPERFAMILY SSF52540 23 248 9.55E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25230 5db3f4aed647d1504d4c0cc1139abacd 66 Gene3D G3DSA:3.10.20.30 1 66 6.9E-24 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_25230 5db3f4aed647d1504d4c0cc1139abacd 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 4.8E-25 T 11-10-2018 IPR010035 ThiS, thiamine-biosynthesis APT56_25230 5db3f4aed647d1504d4c0cc1139abacd 66 SUPERFAMILY SSF54285 3 65 6.25E-20 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APT56_25230 5db3f4aed647d1504d4c0cc1139abacd 66 Pfam PF02597 ThiS family 3 66 2.5E-17 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 APT56_26105 4b35b30f7be907aa8eb679567c54c661 501 Pfam PF00501 AMP-binding enzyme 7 402 5.9E-83 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_26105 4b35b30f7be907aa8eb679567c54c661 501 Pfam PF13193 AMP-binding enzyme C-terminal domain 412 486 3.2E-18 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_26105 4b35b30f7be907aa8eb679567c54c661 501 Gene3D G3DSA:3.40.50.12780 2 395 2.5E-94 T 11-10-2018 APT56_26105 4b35b30f7be907aa8eb679567c54c661 501 Gene3D G3DSA:3.30.300.310 398 500 5.4E-27 T 11-10-2018 APT56_26105 4b35b30f7be907aa8eb679567c54c661 501 ProSitePatterns PS00455 Putative AMP-binding domain signature. 156 167 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_26105 4b35b30f7be907aa8eb679567c54c661 501 SUPERFAMILY SSF56801 4 497 5.49E-132 T 11-10-2018 APT56_26935 de85d62431456e7c8fc7dace63a52fbf 287 Pfam PF00753 Metallo-beta-lactamase superfamily 14 205 2.5E-19 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_26935 de85d62431456e7c8fc7dace63a52fbf 287 Gene3D G3DSA:3.60.15.10 1 287 5.6E-111 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_26935 de85d62431456e7c8fc7dace63a52fbf 287 SUPERFAMILY SSF56281 9 286 3.54E-49 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_26935 de85d62431456e7c8fc7dace63a52fbf 287 SMART SM00849 14 205 2.4E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_16025 ce6cdf688d15af4abf6a60bbddc7a4e3 269 Pfam PF10127 Predicted nucleotidyltransferase 14 259 3.3E-86 T 11-10-2018 IPR018775 Nucleotidyltransferase, predicted APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 52 380 6.4E-95 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 Gene3D G3DSA:3.90.226.10 188 375 1.4E-87 T 11-10-2018 APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 Gene3D G3DSA:2.30.42.10 100 187 1.4E-87 T 11-10-2018 APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 SMART SM00228 100 171 3.7E-17 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 Pfam PF03572 Peptidase family S41 199 377 1.2E-51 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 SMART SM00245 173 378 1.4E-58 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 SUPERFAMILY SSF52096 39 386 6.63E-75 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 SUPERFAMILY SSF50156 89 183 5.11E-20 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 Gene3D G3DSA:3.30.750.44 47 353 1.4E-87 T 11-10-2018 APT56_26380 8fc9d03783ad1898621163e7d1ae03d8 481 Pfam PF13180 PDZ domain 100 176 4.0E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_17375 9616fefcbb3fc56040bc21b1e04ebc83 402 Gene3D G3DSA:3.40.50.1100 17 213 5.8E-178 T 11-10-2018 APT56_17375 9616fefcbb3fc56040bc21b1e04ebc83 402 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 9 398 50.648 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_17375 9616fefcbb3fc56040bc21b1e04ebc83 402 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 14 396 5.4E-183 T 11-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_17375 9616fefcbb3fc56040bc21b1e04ebc83 402 SUPERFAMILY SSF53686 10 395 8.91E-141 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_17375 9616fefcbb3fc56040bc21b1e04ebc83 402 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 60 385 4.3E-50 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_17375 9616fefcbb3fc56040bc21b1e04ebc83 402 PIRSF PIRSF001413 1 401 6.2E-160 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_17375 9616fefcbb3fc56040bc21b1e04ebc83 402 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 88 102 - T 11-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APT56_17375 9616fefcbb3fc56040bc21b1e04ebc83 402 Gene3D G3DSA:3.40.50.1100 61 391 5.8E-178 T 11-10-2018 APT56_10460 c5425cd7970dbc7d998869c99895471a 128 SUPERFAMILY SSF50022 9 115 5.89E-22 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_10460 c5425cd7970dbc7d998869c99895471a 128 Gene3D G3DSA:2.102.10.10 8 123 1.3E-12 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_10460 c5425cd7970dbc7d998869c99895471a 128 Pfam PF00355 Rieske [2Fe-2S] domain 11 98 1.7E-7 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_06190 21b284c216a06406eb1bb00a148a7552 67 Gene3D G3DSA:2.40.50.140 1 66 1.1E-23 T 11-10-2018 APT56_06190 21b284c216a06406eb1bb00a148a7552 67 SUPERFAMILY SSF50249 1 66 1.74E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_06190 21b284c216a06406eb1bb00a148a7552 67 SMART SM00357 3 67 1.8E-23 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APT56_06190 21b284c216a06406eb1bb00a148a7552 67 PRINTS PR00050 Cold shock protein signature 40 58 5.4E-12 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_06190 21b284c216a06406eb1bb00a148a7552 67 PRINTS PR00050 Cold shock protein signature 25 34 5.4E-12 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_06190 21b284c216a06406eb1bb00a148a7552 67 PRINTS PR00050 Cold shock protein signature 4 19 5.4E-12 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_06190 21b284c216a06406eb1bb00a148a7552 67 PIRSF PIRSF002599 1 67 1.4E-20 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 APT56_06190 21b284c216a06406eb1bb00a148a7552 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 5.7E-25 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_06190 21b284c216a06406eb1bb00a148a7552 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site APT56_07330 2a98a235b3e9e148a405046dd01705a4 545 SUPERFAMILY SSF53474 171 477 5.67E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_07330 2a98a235b3e9e148a405046dd01705a4 545 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 17 542 8.5E-198 T 11-10-2018 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 APT56_07330 2a98a235b3e9e148a405046dd01705a4 545 Gene3D G3DSA:3.40.50.1820 187 467 2.2E-11 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_07330 2a98a235b3e9e148a405046dd01705a4 545 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 48 213 2.8E-63 T 11-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Gene3D G3DSA:3.40.10.10 1 73 2.7E-29 T 11-10-2018 IPR035451 Ada-like domain superfamily APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 SUPERFAMILY SSF48150 305 480 1.59E-39 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Pfam PF02805 Metal binding domain of Ada 7 71 2.6E-28 T 11-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Gene3D G3DSA:1.10.10.60 80 188 1.1E-19 T 11-10-2018 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 137 179 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Pfam PF12833 Helix-turn-helix domain 106 184 1.3E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 322 471 1.9E-8 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 SUPERFAMILY SSF46689 136 186 2.69E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Gene3D G3DSA:3.30.310.20 199 315 1.1E-34 T 11-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 SMART SM01009 199 315 2.3E-53 T 11-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 SUPERFAMILY SSF55945 200 296 9.1E-27 T 11-10-2018 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 SMART SM00342 100 183 2.1E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 SMART SM00478 325 482 4.5E-19 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Pfam PF06029 AlkA N-terminal domain 200 315 4.5E-37 T 11-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Gene3D G3DSA:1.10.340.30 316 430 4.0E-27 T 11-10-2018 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 Gene3D G3DSA:1.10.1670.10 433 482 5.0E-13 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APT56_23135 a02f18bf8c97a7d1689276c459afdd54 482 SUPERFAMILY SSF57884 2 76 2.09E-30 T 11-10-2018 IPR035451 Ada-like domain superfamily APT56_03380 5127b4def1fbbdc75cc70a6fcfca748d 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 321 2.3E-64 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_03380 5127b4def1fbbdc75cc70a6fcfca748d 326 Gene3D G3DSA:3.40.190.10 131 251 2.6E-90 T 11-10-2018 APT56_03380 5127b4def1fbbdc75cc70a6fcfca748d 326 Gene3D G3DSA:3.40.190.150 33 316 2.6E-90 T 11-10-2018 APT56_03380 5127b4def1fbbdc75cc70a6fcfca748d 326 PIRSF PIRSF017082 1 326 2.2E-71 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_03380 5127b4def1fbbdc75cc70a6fcfca748d 326 SUPERFAMILY SSF53850 116 285 5.43E-10 T 11-10-2018 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 2 502 5.4E-164 T 11-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 Pfam PF00890 FAD binding domain 4 377 1.0E-92 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 Gene3D G3DSA:1.20.58.100 413 505 1.8E-20 T 11-10-2018 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 Pfam PF02910 Fumarate reductase flavoprotein C-term 425 501 4.0E-10 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.3E-9 T 11-10-2018 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 126 144 1.3E-9 T 11-10-2018 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 340 362 1.3E-9 T 11-10-2018 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 SUPERFAMILY SSF46977 423 504 1.57E-20 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 SUPERFAMILY SSF56425 224 338 1.64E-39 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 SUPERFAMILY SSF51905 1 404 2.73E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 Gene3D G3DSA:3.90.700.10 233 343 6.7E-143 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 9.2E-5 T 11-10-2018 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 355 362 9.2E-5 T 11-10-2018 APT56_01540 87ffddca12241e5926c3f9e58003bcd7 519 Gene3D G3DSA:3.50.50.60 4 389 6.7E-143 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 SUPERFAMILY SSF82714 204 284 6.8E-13 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 SUPERFAMILY SSF82866 811 1034 3.27E-48 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 SUPERFAMILY SSF82866 312 507 2.09E-32 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Gene3D G3DSA:3.30.2090.10 727 814 3.7E-247 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Gene3D G3DSA:1.20.1640.10 525 1026 3.7E-247 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Gene3D G3DSA:3.30.70.1430 576 674 3.7E-247 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Gene3D G3DSA:3.30.70.1320 155 345 3.7E-247 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 SUPERFAMILY SSF82693 575 671 1.2E-5 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Gene3D G3DSA:1.20.1640.10 32 524 3.7E-247 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Gene3D G3DSA:3.30.2090.10 198 287 3.7E-247 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 PRINTS PR00702 Acriflavin resistance protein family signature 456 479 1.7E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 PRINTS PR00702 Acriflavin resistance protein family signature 403 427 1.7E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 PRINTS PR00702 Acriflavin resistance protein family signature 481 504 1.7E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 PRINTS PR00702 Acriflavin resistance protein family signature 561 578 1.7E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 PRINTS PR00702 Acriflavin resistance protein family signature 57 75 1.7E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 PRINTS PR00702 Acriflavin resistance protein family signature 349 372 1.7E-21 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Gene3D G3DSA:3.30.70.1440 675 874 3.7E-247 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 SUPERFAMILY SSF82714 729 813 1.24E-12 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 SUPERFAMILY SSF82693 59 154 5.41E-17 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 SUPERFAMILY SSF82693 155 337 2.88E-18 T 11-10-2018 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Pfam PF00873 AcrB/AcrD/AcrF family 25 1027 1.3E-163 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06280 a1b5691e001b8f998ba00bed911654c8 1057 Gene3D G3DSA:3.30.70.1430 59 822 3.7E-247 T 11-10-2018 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 Gene3D G3DSA:3.40.50.300 4 190 3.5E-77 T 11-10-2018 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 SUPERFAMILY SSF52540 10 532 1.36E-98 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 Gene3D G3DSA:3.40.50.300 191 377 8.6E-56 T 11-10-2018 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 Pfam PF04408 Helicase associated domain (HA2) 423 511 5.6E-15 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 SMART SM00490 259 360 9.2E-20 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 Pfam PF00270 DEAD/DEAH box helicase 18 166 8.8E-6 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 SMART SM00382 25 326 4.1E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 Pfam PF11898 Domain of unknown function (DUF3418) 678 1267 1.1E-213 T 11-10-2018 IPR024590 RNA helicase HrpA, C-terminal APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 588 664 6.0E-17 T 11-10-2018 IPR011709 Domain of unknown function DUF1605 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 SMART SM00487 8 197 4.7E-27 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 2 1267 0.0 T 11-10-2018 IPR010222 RNA helicase HrpA GO:0004004 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 Gene3D G3DSA:1.20.120.1080 402 519 1.2E-15 T 11-10-2018 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 SMART SM00847 420 524 4.2E-29 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 APT56_09045 f043e6aeb1a990293c8a0a79c9b4d2e2 1271 Pfam PF00271 Helicase conserved C-terminal domain 235 360 2.5E-13 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_26435 f06640f2db4141dd45cdf522f9bfd877 414 Gene3D G3DSA:3.30.590.20 3 370 5.7E-99 T 11-10-2018 APT56_26435 f06640f2db4141dd45cdf522f9bfd877 414 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 414 93.655 T 11-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APT56_26435 f06640f2db4141dd45cdf522f9bfd877 414 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 14 288 4.7E-54 T 11-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APT56_26435 f06640f2db4141dd45cdf522f9bfd877 414 SUPERFAMILY SSF55931 5 367 1.96E-102 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT56_26435 f06640f2db4141dd45cdf522f9bfd877 414 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 13 296 3.8E-91 T 11-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 Gene3D G3DSA:1.10.3020.10 163 251 1.3E-90 T 11-10-2018 APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 SUPERFAMILY SSF49785 382 614 3.4E-56 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 349 612 1.3E-47 T 11-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 Gene3D G3DSA:2.60.120.260 382 617 1.6E-75 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 17 616 5.5E-104 T 11-10-2018 IPR005674 CocE/Serine esterase GO:0016787 APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 SMART SM00939 335 613 1.3E-76 T 11-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 Gene3D G3DSA:3.40.50.1820 16 361 1.3E-90 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 21 304 1.0E-53 T 11-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 APT56_20890 296cfefcea05d55ce17349fb15c0744d 632 SUPERFAMILY SSF53474 6 385 1.15E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_22055 37ce0cc23b8b81138dbbc6fbbf3ad273 141 SUPERFAMILY SSF88723 1 137 3.64E-27 T 11-10-2018 IPR029060 PIN-like domain superfamily APT56_22055 37ce0cc23b8b81138dbbc6fbbf3ad273 141 Pfam PF01850 PIN domain 3 122 2.5E-11 T 11-10-2018 IPR002716 PIN domain APT56_22055 37ce0cc23b8b81138dbbc6fbbf3ad273 141 Gene3D G3DSA:3.40.50.1010 1 139 3.6E-37 T 11-10-2018 APT56_22055 37ce0cc23b8b81138dbbc6fbbf3ad273 141 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 136 10.588 T 11-10-2018 IPR022907 VapC family GO:0004540 APT56_24365 27e9f4434c6b83119a99846d0b4c82a3 163 Gene3D G3DSA:1.10.940.10 18 161 2.7E-40 T 11-10-2018 IPR035926 NusB-like superfamily APT56_24365 27e9f4434c6b83119a99846d0b4c82a3 163 Pfam PF01029 NusB family 25 153 4.9E-29 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APT56_24365 27e9f4434c6b83119a99846d0b4c82a3 163 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 24 155 4.0E-36 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 APT56_24365 27e9f4434c6b83119a99846d0b4c82a3 163 SUPERFAMILY SSF48013 22 158 7.59E-36 T 11-10-2018 IPR035926 NusB-like superfamily APT56_24365 27e9f4434c6b83119a99846d0b4c82a3 163 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 22 157 20.279 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 APT56_21345 52955443607b7cd15a23d633c71298c2 337 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 185 306 3.1E-17 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_21345 52955443607b7cd15a23d633c71298c2 337 Gene3D G3DSA:1.10.540.10 1 96 5.9E-13 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_21345 52955443607b7cd15a23d633c71298c2 337 SUPERFAMILY SSF47203 184 318 8.86E-28 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_21345 52955443607b7cd15a23d633c71298c2 337 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 3 78 1.0E-5 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_21345 52955443607b7cd15a23d633c71298c2 337 SUPERFAMILY SSF56645 4 93 8.88E-9 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_21345 52955443607b7cd15a23d633c71298c2 337 Gene3D G3DSA:1.20.140.10 179 321 2.9E-24 T 11-10-2018 APT56_26110 6fb127f09f6638b44d9220396efb91da 262 SUPERFAMILY SSF48256 30 238 1.83E-39 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 APT56_26110 6fb127f09f6638b44d9220396efb91da 262 Pfam PF00285 Citrate synthase, C-terminal domain 34 231 1.3E-24 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_26110 6fb127f09f6638b44d9220396efb91da 262 Gene3D G3DSA:1.10.230.10 101 203 1.3E-24 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain APT56_26110 6fb127f09f6638b44d9220396efb91da 262 Gene3D G3DSA:1.10.580.10 31 229 1.3E-24 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT56_14920 3f0a61df6ce4f0cab821598ca6c644c1 201 Gene3D G3DSA:3.40.50.300 2 174 6.3E-64 T 11-10-2018 APT56_14920 3f0a61df6ce4f0cab821598ca6c644c1 201 ProSitePatterns PS00856 Guanylate kinase-like signature. 31 48 - T 11-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 APT56_14920 3f0a61df6ce4f0cab821598ca6c644c1 201 Hamap MF_00328 Guanylate kinase [gmk]. 1 178 34.225 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 APT56_14920 3f0a61df6ce4f0cab821598ca6c644c1 201 SUPERFAMILY SSF52540 2 180 1.41E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14920 3f0a61df6ce4f0cab821598ca6c644c1 201 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 2 175 3.5E-68 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 APT56_14920 3f0a61df6ce4f0cab821598ca6c644c1 201 SMART SM00072 1 178 8.4E-57 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APT56_14920 3f0a61df6ce4f0cab821598ca6c644c1 201 Gene3D G3DSA:3.30.63.10 28 87 6.3E-64 T 11-10-2018 APT56_14920 3f0a61df6ce4f0cab821598ca6c644c1 201 Pfam PF00625 Guanylate kinase 2 176 2.3E-44 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APT56_04980 6b5ae457c68f7059c5f21924a539b4ad 234 Gene3D G3DSA:3.40.50.300 4 231 6.6E-65 T 11-10-2018 APT56_04980 6b5ae457c68f7059c5f21924a539b4ad 234 Pfam PF00005 ABC transporter 26 174 1.9E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04980 6b5ae457c68f7059c5f21924a539b4ad 234 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_04980 6b5ae457c68f7059c5f21924a539b4ad 234 SMART SM00382 35 223 2.5E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_04980 6b5ae457c68f7059c5f21924a539b4ad 234 SUPERFAMILY SSF52540 6 228 2.94E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_10675 3f19f417306648574965e690bc487e25 269 Gene3D G3DSA:1.10.10.60 159 220 7.9E-9 T 11-10-2018 APT56_10675 3f19f417306648574965e690bc487e25 269 SUPERFAMILY SSF46689 214 262 8.96E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_10675 3f19f417306648574965e690bc487e25 269 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 215 256 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_10675 3f19f417306648574965e690bc487e25 269 Pfam PF12833 Helix-turn-helix domain 184 261 8.0E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_10675 3f19f417306648574965e690bc487e25 269 Gene3D G3DSA:1.10.10.60 221 268 3.1E-11 T 11-10-2018 APT56_10675 3f19f417306648574965e690bc487e25 269 Gene3D G3DSA:2.60.120.10 24 84 1.4E-6 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_10675 3f19f417306648574965e690bc487e25 269 SUPERFAMILY SSF51215 26 147 8.37E-17 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_10675 3f19f417306648574965e690bc487e25 269 Pfam PF02311 AraC-like ligand binding domain 19 122 1.5E-15 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_10675 3f19f417306648574965e690bc487e25 269 SMART SM00342 178 260 4.9E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_02595 fb4df91e8348f0f6a5d0eada6f5531fe 156 Pfam PF04214 Protein of unknown function, DUF 59 126 2.8E-29 T 11-10-2018 IPR007332 Protein of unknown function DUF411 APT56_10755 347adac95fa88a4c1a3dfa2d12038bca 545 SUPERFAMILY SSF56801 12 536 4.71E-140 T 11-10-2018 APT56_10755 347adac95fa88a4c1a3dfa2d12038bca 545 Gene3D G3DSA:3.30.300.310 439 540 1.0E-33 T 11-10-2018 APT56_10755 347adac95fa88a4c1a3dfa2d12038bca 545 Gene3D G3DSA:3.40.50.12780 9 438 6.4E-105 T 11-10-2018 APT56_10755 347adac95fa88a4c1a3dfa2d12038bca 545 Pfam PF00501 AMP-binding enzyme 26 443 4.9E-91 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_10755 347adac95fa88a4c1a3dfa2d12038bca 545 Pfam PF13193 AMP-binding enzyme C-terminal domain 452 526 9.6E-21 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_10755 347adac95fa88a4c1a3dfa2d12038bca 545 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 SUPERFAMILY SSF51735 6 242 8.06E-71 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 TIGRFAM TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase 6 242 1.1E-115 T 11-10-2018 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 195 9.8E-6 T 11-10-2018 APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 Gene3D G3DSA:3.40.50.720 4 243 1.7E-74 T 11-10-2018 APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 242 1.6E-55 T 11-10-2018 APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.2E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.2E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_10565 8382f127df02258b203358ff1c5e3bf1 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.2E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 SMART SM00831 54 127 3.0E-4 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Gene3D G3DSA:1.20.1110.10 301 417 5.1E-26 T 11-10-2018 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Gene3D G3DSA:3.40.50.1000 583 716 5.7E-22 T 11-10-2018 IPR023214 HAD superfamily APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Gene3D G3DSA:2.70.150.10 196 300 3.7E-35 T 11-10-2018 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 SUPERFAMILY SSF81665 53 933 3.79E-107 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 SUPERFAMILY SSF56784 567 720 4.43E-35 T 11-10-2018 IPR036412 HAD-like superfamily APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Pfam PF00122 E1-E2 ATPase 202 385 4.0E-48 T 11-10-2018 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 47 935 0.0 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Pfam PF00690 Cation transporter/ATPase, N-terminus 58 122 1.4E-11 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 SUPERFAMILY SSF81660 400 584 3.05E-39 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 SUPERFAMILY SSF81653 203 304 1.01E-27 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Gene3D G3DSA:3.40.1110.10 418 582 4.7E-59 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Gene3D G3DSA:1.20.1110.10 717 834 3.7E-8 T 11-10-2018 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 643 765 3.2E-29 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 205 441 2.5E-33 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Pfam PF00689 Cation transporting ATPase, C-terminus 759 925 3.0E-16 T 11-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 407 413 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 318 334 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 335 354 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 752 763 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 439 452 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 804 820 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 784 797 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 734 749 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 839 860 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 PRINTS PR01836 Magnesium-transporting ATPase signature 889 910 4.1E-85 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 APT56_05340 72b4ad492c7b8867c0e28ba04ab11a96 935 Pfam PF00702 haloacid dehalogenase-like hydrolase 401 690 3.8E-19 T 11-10-2018 APT56_16115 e96697108cf7fcda6926111baa18b94b 366 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 347 2.9E-95 T 11-10-2018 IPR010732 Type VI secretion, TssG-like APT56_16115 e96697108cf7fcda6926111baa18b94b 366 Pfam PF06996 Type VI secretion, TssG 19 346 1.8E-88 T 11-10-2018 IPR010732 Type VI secretion, TssG-like APT56_15100 4044708865e310f8d1ef627b61265023 656 SUPERFAMILY SSF54534 258 368 3.01E-28 T 11-10-2018 APT56_15100 4044708865e310f8d1ef627b61265023 656 Gene3D G3DSA:1.10.4030.30 42 194 6.2E-15 T 11-10-2018 APT56_15100 4044708865e310f8d1ef627b61265023 656 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 307 328 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 APT56_15100 4044708865e310f8d1ef627b61265023 656 Pfam PF00639 PPIC-type PPIASE domain 272 367 1.5E-26 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 APT56_15100 4044708865e310f8d1ef627b61265023 656 Gene3D G3DSA:3.10.50.40 266 370 3.1E-36 T 11-10-2018 APT56_15100 4044708865e310f8d1ef627b61265023 656 SUPERFAMILY SSF109998 42 236 2.0E-32 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily APT56_15100 4044708865e310f8d1ef627b61265023 656 Gene3D G3DSA:1.10.4030.30 241 382 3.1E-36 T 11-10-2018 APT56_15100 4044708865e310f8d1ef627b61265023 656 Pfam PF13624 SurA N-terminal domain 1 162 4.1E-49 T 11-10-2018 APT56_23950 ebe4161e307e0f80fee2a17d7690d211 578 Pfam PF00664 ABC transporter transmembrane region 52 279 3.9E-19 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_23950 ebe4161e307e0f80fee2a17d7690d211 578 Gene3D G3DSA:1.20.1560.10 1 316 3.1E-36 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_23950 ebe4161e307e0f80fee2a17d7690d211 578 Gene3D G3DSA:3.40.50.300 324 573 1.8E-86 T 11-10-2018 APT56_23950 ebe4161e307e0f80fee2a17d7690d211 578 SUPERFAMILY SSF52540 325 564 1.02E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_23950 ebe4161e307e0f80fee2a17d7690d211 578 SUPERFAMILY SSF90123 5 317 9.68E-46 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_23950 ebe4161e307e0f80fee2a17d7690d211 578 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_23950 ebe4161e307e0f80fee2a17d7690d211 578 SMART SM00382 355 541 1.7E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23950 ebe4161e307e0f80fee2a17d7690d211 578 Pfam PF00005 ABC transporter 346 495 1.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19840 c0cde694fb34139e69dfd638545c1527 741 Gene3D G3DSA:3.10.105.10 430 654 1.7E-46 T 11-10-2018 APT56_19840 c0cde694fb34139e69dfd638545c1527 741 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 167 601 1.3E-47 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_19840 c0cde694fb34139e69dfd638545c1527 741 SUPERFAMILY SSF53850 32 691 3.44E-85 T 11-10-2018 APT56_05640 d18690647ef48bec2778bc3089a79df3 116 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 44 111 3.7E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_05640 d18690647ef48bec2778bc3089a79df3 116 Gene3D G3DSA:1.10.760.10 34 116 1.8E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_05640 d18690647ef48bec2778bc3089a79df3 116 SUPERFAMILY SSF46626 12 116 2.91E-19 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_22155 d3218230587b8cc0d1af486d4503e335 328 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 309 2.0E-28 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_22155 d3218230587b8cc0d1af486d4503e335 328 Gene3D G3DSA:3.40.190.170 25 327 1.7E-63 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 SUPERFAMILY SSF103088 153 261 1.31E-34 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 Gene3D G3DSA:3.30.1330.60 137 264 6.0E-39 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 PRINTS PR01021 OMPA domain signature 192 207 9.4E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 PRINTS PR01021 OMPA domain signature 162 184 9.4E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 PRINTS PR01021 OMPA domain signature 207 223 9.4E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 Gene3D G3DSA:3.40.1520.20 28 136 3.2E-9 T 11-10-2018 APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 Pfam PF00691 OmpA family 162 256 7.3E-25 T 11-10-2018 IPR006665 OmpA-like domain APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 Pfam PF04972 BON domain 28 71 9.0E-4 T 11-10-2018 IPR007055 BON domain APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 245 264 2.0E-6 T 11-10-2018 APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 225 244 2.0E-6 T 11-10-2018 APT56_16230 39b2e4503a5f920824fa043f4e4d030e 264 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 207 224 2.0E-6 T 11-10-2018 APT56_09445 5a50e2ece81b2a8ecf39ad06cf59cbc6 89 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 21 45 - T 11-10-2018 IPR001455 TusA-like domain APT56_09445 5a50e2ece81b2a8ecf39ad06cf59cbc6 89 Gene3D G3DSA:3.30.110.40 11 89 1.6E-25 T 11-10-2018 IPR036868 TusA-like domain superfamily APT56_09445 5a50e2ece81b2a8ecf39ad06cf59cbc6 89 Pfam PF01206 Sulfurtransferase TusA 20 82 4.9E-20 T 11-10-2018 IPR001455 TusA-like domain APT56_09445 5a50e2ece81b2a8ecf39ad06cf59cbc6 89 SUPERFAMILY SSF64307 5 88 1.03E-20 T 11-10-2018 IPR036868 TusA-like domain superfamily APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 11-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 PIRSF PIRSF000098 1 433 1.7E-164 T 11-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 Gene3D G3DSA:3.40.50.720 5 340 2.7E-170 T 11-10-2018 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 Gene3D G3DSA:3.30.360.10 136 348 2.7E-170 T 11-10-2018 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 Pfam PF00742 Homoserine dehydrogenase 137 315 1.6E-65 T 11-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 3.3E-20 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 SUPERFAMILY SSF55021 353 422 1.3E-14 T 11-10-2018 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 SUPERFAMILY SSF51735 1 158 1.34E-36 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 Gene3D G3DSA:3.30.70.260 349 421 2.7E-170 T 11-10-2018 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 SUPERFAMILY SSF55347 137 302 2.22E-53 T 11-10-2018 APT56_08385 cb92a701f903bd9703605cdc57ada53c 434 Pfam PF01842 ACT domain 354 419 2.5E-15 T 11-10-2018 IPR002912 ACT domain APT56_19685 c457125a6d833b01fb0a47b9b6ebed4f 321 Gene3D G3DSA:2.60.120.10 33 306 2.8E-53 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_19685 c457125a6d833b01fb0a47b9b6ebed4f 321 Pfam PF05726 Pirin C-terminal cupin domain 260 311 1.9E-10 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 APT56_19685 c457125a6d833b01fb0a47b9b6ebed4f 321 Gene3D G3DSA:2.60.120.10 139 280 2.8E-53 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_19685 c457125a6d833b01fb0a47b9b6ebed4f 321 PIRSF PIRSF006232 8 318 4.1E-49 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 APT56_19685 c457125a6d833b01fb0a47b9b6ebed4f 321 Pfam PF02678 Pirin 44 116 8.8E-13 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 APT56_19685 c457125a6d833b01fb0a47b9b6ebed4f 321 SUPERFAMILY SSF51182 20 317 2.49E-46 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_15200 a5939ec94a3297f182b405a722d28bcd 340 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 327 7.8E-131 T 11-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 APT56_15200 a5939ec94a3297f182b405a722d28bcd 340 Pfam PF00296 Luciferase-like monooxygenase 20 303 7.3E-39 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT56_15200 a5939ec94a3297f182b405a722d28bcd 340 SUPERFAMILY SSF51679 7 327 4.45E-82 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_15200 a5939ec94a3297f182b405a722d28bcd 340 Gene3D G3DSA:3.20.20.30 4 330 3.2E-98 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_21900 d5049231468ccc5508110f02b05f629e 158 PIRSF PIRSF006092 1 158 5.9E-53 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 APT56_21900 d5049231468ccc5508110f02b05f629e 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 2.6E-29 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 APT56_21900 d5049231468ccc5508110f02b05f629e 158 Gene3D G3DSA:3.10.50.30 76 158 4.8E-29 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 APT56_21900 d5049231468ccc5508110f02b05f629e 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 2.0E-57 T 11-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 APT56_21900 d5049231468ccc5508110f02b05f629e 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.009 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 APT56_21900 d5049231468ccc5508110f02b05f629e 158 SUPERFAMILY SSF46557 4 78 8.76E-28 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 APT56_21900 d5049231468ccc5508110f02b05f629e 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 APT56_21900 d5049231468ccc5508110f02b05f629e 158 Gene3D G3DSA:1.10.287.180 1 75 3.4E-31 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 APT56_21900 d5049231468ccc5508110f02b05f629e 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 APT56_21900 d5049231468ccc5508110f02b05f629e 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 73 3.9E-32 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 APT56_21900 d5049231468ccc5508110f02b05f629e 158 SUPERFAMILY SSF54534 83 157 1.31E-23 T 11-10-2018 APT56_24215 6ef5c7a6413f895c4ea0e16962bd1769 274 Pfam PF00905 Penicillin binding protein transpeptidase domain 29 253 9.1E-42 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT56_24215 6ef5c7a6413f895c4ea0e16962bd1769 274 SUPERFAMILY SSF56601 29 257 1.3E-35 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_24215 6ef5c7a6413f895c4ea0e16962bd1769 274 Gene3D G3DSA:3.40.710.10 26 271 6.7E-84 T 11-10-2018 APT56_24215 6ef5c7a6413f895c4ea0e16962bd1769 274 ProSitePatterns PS00337 Beta-lactamase class-D active site. 56 66 - T 11-10-2018 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 APT56_07275 d39bcaa50980ff415f58845093b50d54 210 SUPERFAMILY SSF49478 133 183 2.12E-5 T 11-10-2018 APT56_07275 d39bcaa50980ff415f58845093b50d54 210 Pfam PF10670 Domain of unknown function (DUF4198) 87 183 2.8E-11 T 11-10-2018 IPR019613 Protein of unknown function DUF4198 APT56_21215 14c23287cf46e36bc64a866150dd39d3 398 SUPERFAMILY SSF52151 20 370 1.15E-51 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APT56_21215 14c23287cf46e36bc64a866150dd39d3 398 Pfam PF12536 Patatin phospholipase 277 381 2.5E-35 T 11-10-2018 IPR021095 Protein of unknown function DUF3734 APT56_21215 14c23287cf46e36bc64a866150dd39d3 398 Gene3D G3DSA:3.40.1090.10 146 297 3.0E-14 T 11-10-2018 APT56_21215 14c23287cf46e36bc64a866150dd39d3 398 Gene3D G3DSA:3.40.1090.10 6 104 9.1E-17 T 11-10-2018 APT56_21215 14c23287cf46e36bc64a866150dd39d3 398 Pfam PF01734 Patatin-like phospholipase 23 82 7.7E-13 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 APT56_21215 14c23287cf46e36bc64a866150dd39d3 398 Pfam PF01734 Patatin-like phospholipase 151 240 4.2E-9 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 APT56_14535 d8b0a962df800e38baed42b63c53896d 302 Pfam PF00892 EamA-like transporter family 161 284 1.1E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_14535 d8b0a962df800e38baed42b63c53896d 302 Pfam PF00892 EamA-like transporter family 18 149 2.3E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_14535 d8b0a962df800e38baed42b63c53896d 302 SUPERFAMILY SSF103481 52 153 2.48E-15 T 11-10-2018 APT56_14535 d8b0a962df800e38baed42b63c53896d 302 SUPERFAMILY SSF103481 196 293 3.14E-14 T 11-10-2018 APT56_06590 0b04022f128aae4f99d3fd6ba230b4ed 612 SMART SM00382 371 569 1.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_06590 0b04022f128aae4f99d3fd6ba230b4ed 612 SUPERFAMILY SSF52540 345 590 2.61E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06590 0b04022f128aae4f99d3fd6ba230b4ed 612 Pfam PF00005 ABC transporter 363 520 5.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_06590 0b04022f128aae4f99d3fd6ba230b4ed 612 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 570 591 1.2E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_06590 0b04022f128aae4f99d3fd6ba230b4ed 612 Gene3D G3DSA:3.40.50.300 342 592 8.7E-61 T 11-10-2018 APT56_06590 0b04022f128aae4f99d3fd6ba230b4ed 612 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 297 1.0E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_10680 7cd500f398b6cf6be3e7056ca6c3eaeb 312 Pfam PF12146 Serine aminopeptidase, S33 31 145 7.0E-14 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 APT56_10680 7cd500f398b6cf6be3e7056ca6c3eaeb 312 Gene3D G3DSA:3.40.50.1820 1 286 1.0E-25 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_10680 7cd500f398b6cf6be3e7056ca6c3eaeb 312 PIRSF PIRSF037442 1 289 1.2E-102 T 11-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 APT56_10680 7cd500f398b6cf6be3e7056ca6c3eaeb 312 SUPERFAMILY SSF53474 2 285 1.23E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_00960 6ce23bab232813a6b42d5a7ca68ab991 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 319 2.2E-69 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00960 6ce23bab232813a6b42d5a7ca68ab991 325 PIRSF PIRSF017082 1 325 5.6E-74 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00960 6ce23bab232813a6b42d5a7ca68ab991 325 Gene3D G3DSA:3.40.190.10 126 250 9.8E-94 T 11-10-2018 APT56_00960 6ce23bab232813a6b42d5a7ca68ab991 325 Gene3D G3DSA:3.40.190.150 30 315 9.8E-94 T 11-10-2018 APT56_00960 6ce23bab232813a6b42d5a7ca68ab991 325 SUPERFAMILY SSF53850 115 287 3.39E-13 T 11-10-2018 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 SUPERFAMILY SSF55021 6 85 1.62E-19 T 11-10-2018 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 Pfam PF13740 ACT domain 7 81 2.4E-7 T 11-10-2018 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 Gene3D G3DSA:3.30.70.260 1 87 1.3E-30 T 11-10-2018 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 SUPERFAMILY SSF53328 89 284 2.88E-63 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 Pfam PF00551 Formyl transferase 89 265 1.6E-39 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 3 283 48.377 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 PIRSF PIRSF036480 3 284 4.4E-114 T 11-10-2018 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 7 283 1.0E-106 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 40 52 6.8E-58 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 235 257 6.8E-58 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 8 34 6.8E-58 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 89 111 6.8E-58 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 257 282 6.8E-58 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 111 138 6.8E-58 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 APT56_04925 8fbb354cda5ba30f819323029fd68f2d 284 Gene3D G3DSA:3.40.50.170 88 283 6.0E-72 T 11-10-2018 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 11 1033 0.0 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 295 736 4.7E-175 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 SMART SM00481 12 79 6.7E-24 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 Gene3D G3DSA:3.20.20.140 1 274 1.8E-85 T 11-10-2018 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 Gene3D G3DSA:1.10.10.1600 438 517 5.2E-26 T 11-10-2018 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 Pfam PF14579 Helix-hairpin-helix motif 809 907 6.7E-28 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 SUPERFAMILY SSF89550 11 267 1.16E-10 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 Pfam PF01336 OB-fold nucleic acid binding domain 999 1074 6.2E-11 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 Gene3D G3DSA:2.40.50.140 986 1077 3.2E-7 T 11-10-2018 APT56_09065 cc2bc276b216b9356f8d48f4921677fa 1163 Pfam PF02811 PHP domain 13 177 2.4E-43 T 11-10-2018 IPR004013 PHP domain GO:0003824 APT56_07065 47354f72298164c1bfceb8d05d98a579 94 Gene3D G3DSA:3.30.70.100 1 94 4.4E-30 T 11-10-2018 APT56_07065 47354f72298164c1bfceb8d05d98a579 94 SUPERFAMILY SSF54909 1 94 3.16E-26 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_07065 47354f72298164c1bfceb8d05d98a579 94 Pfam PF07045 Domain of unknown function (DUF1330) 2 94 6.6E-33 T 11-10-2018 IPR010753 Domain of unknown function DUF1330 APT56_26770 91eae8d6be821200f7a130b70fc621bc 189 Pfam PF04093 rod shape-determining protein MreD 45 168 1.8E-12 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 APT56_26770 91eae8d6be821200f7a130b70fc621bc 189 PIRSF PIRSF018472 24 183 2.1E-33 T 11-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type APT56_26770 91eae8d6be821200f7a130b70fc621bc 189 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 34 174 2.8E-22 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 APT56_04645 eb4e887bb35991a70335dfc54089cfab 263 SMART SM00650 20 188 1.2E-79 T 11-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 APT56_04645 eb4e887bb35991a70335dfc54089cfab 263 Gene3D G3DSA:3.40.50.150 1 187 5.1E-63 T 11-10-2018 APT56_04645 eb4e887bb35991a70335dfc54089cfab 263 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 36 63 - T 11-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 APT56_04645 eb4e887bb35991a70335dfc54089cfab 263 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 5 253 4.7E-82 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 APT56_04645 eb4e887bb35991a70335dfc54089cfab 263 Gene3D G3DSA:1.10.8.100 194 259 5.9E-20 T 11-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 APT56_04645 eb4e887bb35991a70335dfc54089cfab 263 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 4 255 54.538 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 APT56_04645 eb4e887bb35991a70335dfc54089cfab 263 SUPERFAMILY SSF53335 4 256 4.58E-73 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_04645 eb4e887bb35991a70335dfc54089cfab 263 Pfam PF00398 Ribosomal RNA adenine dimethylase 4 253 5.6E-57 T 11-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm APT56_09800 73acf26756c598545ccdeff837104126 622 Pfam PF01476 LysM domain 170 222 1.9E-6 T 11-10-2018 IPR018392 LysM domain APT56_09800 73acf26756c598545ccdeff837104126 622 Pfam PF01391 Collagen triple helix repeat (20 copies) 351 407 4.7E-7 T 11-10-2018 IPR008160 Collagen triple helix repeat APT56_09800 73acf26756c598545ccdeff837104126 622 Pfam PF01391 Collagen triple helix repeat (20 copies) 451 509 7.9E-7 T 11-10-2018 IPR008160 Collagen triple helix repeat APT56_09800 73acf26756c598545ccdeff837104126 622 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 174 245 2.1E-23 T 11-10-2018 IPR020012 Motility protein FimV, N-terminal APT56_09800 73acf26756c598545ccdeff837104126 622 SMART SM00257 167 222 6.1E-4 T 11-10-2018 IPR018392 LysM domain APT56_09800 73acf26756c598545ccdeff837104126 622 Gene3D G3DSA:3.10.350.10 159 234 9.8E-8 T 11-10-2018 IPR036779 LysM domain superfamily APT56_25690 fe94c92b41200f75d62d24dd61d7005c 298 SUPERFAMILY SSF103481 191 295 1.09E-7 T 11-10-2018 APT56_25690 fe94c92b41200f75d62d24dd61d7005c 298 Pfam PF00892 EamA-like transporter family 12 143 2.0E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_25690 fe94c92b41200f75d62d24dd61d7005c 298 Pfam PF00892 EamA-like transporter family 158 289 5.6E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_25690 fe94c92b41200f75d62d24dd61d7005c 298 SUPERFAMILY SSF103481 51 143 1.11E-12 T 11-10-2018 APT56_20770 3e9e182d566f9933d04ea8399c0b07e9 290 SUPERFAMILY SSF48179 164 289 1.13E-26 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_20770 3e9e182d566f9933d04ea8399c0b07e9 290 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 1.1E-16 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APT56_20770 3e9e182d566f9933d04ea8399c0b07e9 290 PIRSF PIRSF000103 1 290 4.5E-77 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT56_20770 3e9e182d566f9933d04ea8399c0b07e9 290 SUPERFAMILY SSF51735 1 163 3.6E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_20770 3e9e182d566f9933d04ea8399c0b07e9 290 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 163 4.9E-37 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 APT56_20770 3e9e182d566f9933d04ea8399c0b07e9 290 Gene3D G3DSA:3.40.50.720 1 163 3.0E-46 T 11-10-2018 APT56_20770 3e9e182d566f9933d04ea8399c0b07e9 290 Gene3D G3DSA:1.10.1040.10 164 290 8.5E-24 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_02135 4266b69421e6857bc80107579dde319c 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 APT56_02135 4266b69421e6857bc80107579dde319c 258 Gene3D G3DSA:3.90.226.10 3 199 5.5E-76 T 11-10-2018 APT56_02135 4266b69421e6857bc80107579dde319c 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 257 4.3E-84 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_02135 4266b69421e6857bc80107579dde319c 258 SUPERFAMILY SSF52096 1 258 1.42E-93 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_02135 4266b69421e6857bc80107579dde319c 258 Gene3D G3DSA:1.10.12.10 201 257 9.8E-28 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_26520 e937e0b813e94a728788edfa83531fc1 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 161 4.4E-55 T 11-10-2018 IPR023635 Peptide deformylase APT56_26520 e937e0b813e94a728788edfa83531fc1 170 Pfam PF01327 Polypeptide deformylase 5 153 4.7E-52 T 11-10-2018 IPR023635 Peptide deformylase APT56_26520 e937e0b813e94a728788edfa83531fc1 170 PRINTS PR01576 Peptide deformylase signature 33 62 1.9E-36 T 11-10-2018 IPR023635 Peptide deformylase APT56_26520 e937e0b813e94a728788edfa83531fc1 170 PRINTS PR01576 Peptide deformylase signature 121 150 1.9E-36 T 11-10-2018 IPR023635 Peptide deformylase APT56_26520 e937e0b813e94a728788edfa83531fc1 170 PRINTS PR01576 Peptide deformylase signature 90 101 1.9E-36 T 11-10-2018 IPR023635 Peptide deformylase APT56_26520 e937e0b813e94a728788edfa83531fc1 170 PRINTS PR01576 Peptide deformylase signature 102 120 1.9E-36 T 11-10-2018 IPR023635 Peptide deformylase APT56_26520 e937e0b813e94a728788edfa83531fc1 170 Hamap MF_00163 Peptide deformylase [def]. 2 163 31.274 T 11-10-2018 IPR023635 Peptide deformylase APT56_26520 e937e0b813e94a728788edfa83531fc1 170 PIRSF PIRSF004749 1 169 4.9E-57 T 11-10-2018 IPR023635 Peptide deformylase APT56_26520 e937e0b813e94a728788edfa83531fc1 170 SUPERFAMILY SSF56420 2 164 1.57E-63 T 11-10-2018 IPR036821 Peptide deformylase superfamily APT56_26520 e937e0b813e94a728788edfa83531fc1 170 Gene3D G3DSA:3.90.45.10 1 168 2.1E-65 T 11-10-2018 IPR036821 Peptide deformylase superfamily APT56_02650 b0d7c15ff4e21d9cca52ff18c215a10f 517 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 1 517 49.641 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 APT56_02650 b0d7c15ff4e21d9cca52ff18c215a10f 517 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 4 442 3.9E-171 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 APT56_02650 b0d7c15ff4e21d9cca52ff18c215a10f 517 SUPERFAMILY SSF56112 90 435 3.43E-42 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_02650 b0d7c15ff4e21d9cca52ff18c215a10f 517 Pfam PF03109 ABC1 family 108 229 4.9E-33 T 11-10-2018 IPR004147 UbiB domain APT56_26690 419e5bbe90ef1afc020da3f84c9e2de7 290 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 2 286 38.653 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 APT56_26690 419e5bbe90ef1afc020da3f84c9e2de7 290 PIRSF PIRSF005052 2 289 1.2E-111 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 APT56_26690 419e5bbe90ef1afc020da3f84c9e2de7 290 Gene3D G3DSA:3.40.50.300 2 167 2.0E-7 T 11-10-2018 APT56_26690 419e5bbe90ef1afc020da3f84c9e2de7 290 Pfam PF03668 P-loop ATPase protein family 3 283 2.6E-85 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 APT56_26690 419e5bbe90ef1afc020da3f84c9e2de7 290 SUPERFAMILY SSF52540 3 160 4.22E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 Gene3D G3DSA:3.20.20.60 5 340 1.2E-157 T 11-10-2018 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 PRINTS PR01050 Pyruvate kinase family signature 274 298 2.7E-50 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 PRINTS PR01050 Pyruvate kinase family signature 189 203 2.7E-50 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 PRINTS PR01050 Pyruvate kinase family signature 62 78 2.7E-50 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 PRINTS PR01050 Pyruvate kinase family signature 222 248 2.7E-50 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 PRINTS PR01050 Pyruvate kinase family signature 249 273 2.7E-50 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 PRINTS PR01050 Pyruvate kinase family signature 318 334 2.7E-50 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 PRINTS PR01050 Pyruvate kinase family signature 299 317 2.7E-50 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 SUPERFAMILY SSF52935 328 479 1.31E-35 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 Gene3D G3DSA:2.40.33.10 73 171 1.2E-157 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 SUPERFAMILY SSF51621 3 345 1.73E-90 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 477 4.8E-157 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 Pfam PF00224 Pyruvate kinase, barrel domain 5 343 1.1E-119 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 SUPERFAMILY SSF50800 73 168 4.01E-23 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 217 229 - T 11-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 362 477 1.7E-25 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_04655 263d6d681b2f2a5e4b5559ed7cb543d3 480 Gene3D G3DSA:3.40.1380.20 341 475 1.2E-157 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APT56_22775 3d866e32ae6123b02518fd5f9f306d0c 157 Pfam PF02130 Uncharacterized protein family UPF0054 28 147 1.2E-27 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APT56_22775 3d866e32ae6123b02518fd5f9f306d0c 157 Gene3D G3DSA:3.40.390.30 4 157 4.7E-38 T 11-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 APT56_22775 3d866e32ae6123b02518fd5f9f306d0c 157 SUPERFAMILY SSF55486 31 154 2.0E-36 T 11-10-2018 APT56_22775 3d866e32ae6123b02518fd5f9f306d0c 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 152 19.475 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APT56_22775 3d866e32ae6123b02518fd5f9f306d0c 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 46 148 8.3E-27 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APT56_00440 776e9f82d5943871f732c258c5595988 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 322 1.8E-88 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00440 776e9f82d5943871f732c258c5595988 326 PIRSF PIRSF017082 1 325 3.1E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00440 776e9f82d5943871f732c258c5595988 326 Gene3D G3DSA:3.40.190.150 30 314 2.2E-111 T 11-10-2018 APT56_00440 776e9f82d5943871f732c258c5595988 326 SUPERFAMILY SSF53850 115 287 5.07E-11 T 11-10-2018 APT56_00440 776e9f82d5943871f732c258c5595988 326 Gene3D G3DSA:3.40.190.10 128 251 2.2E-111 T 11-10-2018 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 Pfam PF01218 Coproporphyrinogen III oxidase 10 303 3.7E-126 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 279 53.126 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 PRINTS PR00073 Coprogen oxidase signature 30 46 7.4E-80 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 PRINTS PR00073 Coprogen oxidase signature 89 113 7.4E-80 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 PRINTS PR00073 Coprogen oxidase signature 47 68 7.4E-80 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 PRINTS PR00073 Coprogen oxidase signature 264 290 7.4E-80 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 PRINTS PR00073 Coprogen oxidase signature 236 263 7.4E-80 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 PRINTS PR00073 Coprogen oxidase signature 127 149 7.4E-80 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 PRINTS PR00073 Coprogen oxidase signature 164 193 7.4E-80 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 168 192 - T 11-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 Gene3D G3DSA:3.40.1500.10 2 303 7.3E-129 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 SUPERFAMILY SSF102886 8 303 2.35E-131 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09210 a39bca4eb534ee6498aed9989c766e2a 303 PIRSF PIRSF000166 5 303 4.5E-121 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 APT56_09470 b9e380779fecb6a89511a1b44307b589 220 Pfam PF13560 Helix-turn-helix domain 32 89 1.1E-13 T 11-10-2018 APT56_09470 b9e380779fecb6a89511a1b44307b589 220 Pfam PF07883 Cupin domain 139 208 6.6E-12 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_09470 b9e380779fecb6a89511a1b44307b589 220 Gene3D G3DSA:2.60.120.10 106 208 5.5E-15 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_09470 b9e380779fecb6a89511a1b44307b589 220 SUPERFAMILY SSF47413 29 95 5.9E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_09470 b9e380779fecb6a89511a1b44307b589 220 SMART SM00530 35 90 5.3E-13 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_09470 b9e380779fecb6a89511a1b44307b589 220 SUPERFAMILY SSF51182 75 210 9.17E-22 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_09470 b9e380779fecb6a89511a1b44307b589 220 Gene3D G3DSA:1.10.260.40 30 105 1.0E-17 T 11-10-2018 APT56_27805 18438ba5f5decb6339ef1ebf48bbd0da 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 11-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27805 18438ba5f5decb6339ef1ebf48bbd0da 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 7.1E-21 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27805 18438ba5f5decb6339ef1ebf48bbd0da 63 Gene3D G3DSA:1.10.287.310 1 62 6.3E-26 T 11-10-2018 APT56_27805 18438ba5f5decb6339ef1ebf48bbd0da 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.408 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27805 18438ba5f5decb6339ef1ebf48bbd0da 63 SUPERFAMILY SSF46561 1 61 5.36E-20 T 11-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27805 18438ba5f5decb6339ef1ebf48bbd0da 63 Pfam PF00831 Ribosomal L29 protein 4 60 4.5E-21 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_12930 dcbc66a666c0cf88692eb97c104f5ae4 219 Gene3D G3DSA:3.40.1050.10 1 208 7.2E-72 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 APT56_12930 dcbc66a666c0cf88692eb97c104f5ae4 219 Pfam PF00484 Carbonic anhydrase 37 196 2.3E-47 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT56_12930 dcbc66a666c0cf88692eb97c104f5ae4 219 SMART SM00947 30 201 1.7E-56 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT56_12930 dcbc66a666c0cf88692eb97c104f5ae4 219 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 87 107 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT56_12930 dcbc66a666c0cf88692eb97c104f5ae4 219 SUPERFAMILY SSF53056 2 210 4.84E-61 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 APT56_11100 08c85728b185dc6854f84421106cef32 591 SUPERFAMILY SSF143975 31 393 3.66E-113 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_11100 08c85728b185dc6854f84421106cef32 591 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 141 151 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_11100 08c85728b185dc6854f84421106cef32 591 Gene3D G3DSA:3.50.30.80 394 548 5.3E-49 T 11-10-2018 APT56_11100 08c85728b185dc6854f84421106cef32 591 Pfam PF00920 Dehydratase family 58 573 9.6E-173 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_11100 08c85728b185dc6854f84421106cef32 591 SUPERFAMILY SSF52016 394 579 6.75E-55 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 SUPERFAMILY SSF56235 5 590 9.84E-143 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 Pfam PF01019 Gamma-glutamyltranspeptidase 28 590 4.0E-125 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 Gene3D G3DSA:3.60.20.40 409 598 1.8E-48 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 Gene3D G3DSA:1.10.246.130 263 381 1.2E-32 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 463 478 1.4E-26 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 124 143 1.4E-26 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 409 427 1.4E-26 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 35 60 1.4E-26 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 106 124 1.4E-26 T 11-10-2018 APT56_06350 bbf66a4f97ad1f254f5ca16696b9145d 599 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 487 504 1.4E-26 T 11-10-2018 APT56_24455 94d9ecb6c7ef864677d7231a020af109 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 1.7E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24455 94d9ecb6c7ef864677d7231a020af109 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 1.7E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24455 94d9ecb6c7ef864677d7231a020af109 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 1.7E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24455 94d9ecb6c7ef864677d7231a020af109 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 1.7E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24455 94d9ecb6c7ef864677d7231a020af109 148 Gene3D G3DSA:1.10.10.10 2 140 1.3E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24455 94d9ecb6c7ef864677d7231a020af109 148 SUPERFAMILY SSF46785 9 139 5.31E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_24455 94d9ecb6c7ef864677d7231a020af109 148 Pfam PF01047 MarR family 34 87 1.8E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24455 94d9ecb6c7ef864677d7231a020af109 148 SMART SM00347 24 124 3.8E-19 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24555 d40ae83040dba83950c365e5e62599e4 439 Pfam PF09298 Fumarylacetoacetase N-terminal 30 131 5.9E-22 T 11-10-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 APT56_24555 d40ae83040dba83950c365e5e62599e4 439 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 15 437 9.5E-158 T 11-10-2018 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 APT56_24555 d40ae83040dba83950c365e5e62599e4 439 Gene3D G3DSA:3.90.850.10 130 439 2.9E-112 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_24555 d40ae83040dba83950c365e5e62599e4 439 Gene3D G3DSA:2.30.30.230 1 128 1.4E-33 T 11-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 APT56_24555 d40ae83040dba83950c365e5e62599e4 439 SUPERFAMILY SSF56529 133 437 1.44E-89 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_24555 d40ae83040dba83950c365e5e62599e4 439 SUPERFAMILY SSF63433 14 131 2.88E-30 T 11-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 APT56_24555 d40ae83040dba83950c365e5e62599e4 439 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 137 434 2.7E-51 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 SUPERFAMILY SSF102114 28 309 7.98E-72 T 11-10-2018 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 Pfam PF13394 4Fe-4S single cluster domain 43 137 5.9E-8 T 11-10-2018 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 28 364 4.8E-111 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 42 53 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 SMART SM00729 36 249 5.3E-9 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 Gene3D G3DSA:3.20.20.70 27 364 3.0E-90 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 Pfam PF04055 Radical SAM superfamily 40 209 6.8E-27 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 Pfam PF06463 Molybdenum Cofactor Synthesis C 218 343 1.7E-35 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_22895 957f8d71a7910ab1a5697f6040be22f3 364 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 27 364 39.394 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 Gene3D G3DSA:3.40.190.10 182 286 3.1E-28 T 11-10-2018 APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 77 1.8E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 Gene3D G3DSA:1.10.10.10 16 104 6.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 SUPERFAMILY SSF53850 106 318 8.51E-22 T 11-10-2018 APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 SUPERFAMILY SSF46785 16 127 8.57E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 55 1.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 1.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 55 66 1.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 Gene3D G3DSA:3.40.190.10 108 296 3.1E-28 T 11-10-2018 APT56_23380 0749c5d9b0591116b28bac4483ee2a4c 320 Pfam PF03466 LysR substrate binding domain 103 313 2.6E-21 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_14895 c68f36696df68c15fce1e5070d88b32c 197 Pfam PF00877 NlpC/P60 family 75 183 2.2E-32 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain APT56_14895 c68f36696df68c15fce1e5070d88b32c 197 Gene3D G3DSA:3.90.1720.10 57 196 6.1E-44 T 11-10-2018 APT56_14895 c68f36696df68c15fce1e5070d88b32c 197 SUPERFAMILY SSF54001 56 187 5.4E-41 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APT56_06785 6120595612ee4b7ca54682d0c8bb3f94 311 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 311 2.4E-29 T 11-10-2018 IPR020801 Polyketide synthase, acyl transferase domain APT56_06785 6120595612ee4b7ca54682d0c8bb3f94 311 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 289 3.5E-104 T 11-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 APT56_06785 6120595612ee4b7ca54682d0c8bb3f94 311 SUPERFAMILY SSF52151 2 296 5.41E-69 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APT56_06785 6120595612ee4b7ca54682d0c8bb3f94 311 Pfam PF00698 Acyl transferase domain 5 279 7.3E-36 T 11-10-2018 IPR014043 Acyl transferase APT56_06785 6120595612ee4b7ca54682d0c8bb3f94 311 Gene3D G3DSA:3.40.366.10 4 282 8.5E-95 T 11-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 APT56_06785 6120595612ee4b7ca54682d0c8bb3f94 311 SUPERFAMILY SSF55048 126 195 1.31E-17 T 11-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding APT56_06785 6120595612ee4b7ca54682d0c8bb3f94 311 PIRSF PIRSF000446 1 309 2.9E-108 T 11-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 APT56_06785 6120595612ee4b7ca54682d0c8bb3f94 311 Gene3D G3DSA:3.30.70.250 123 195 8.5E-95 T 11-10-2018 APT56_16975 d8bc8c4da11c620b91cfb9de6a851716 428 Gene3D G3DSA:3.30.1540.10 234 322 4.6E-107 T 11-10-2018 APT56_16975 d8bc8c4da11c620b91cfb9de6a851716 428 Pfam PF02515 CoA-transferase family III 16 363 1.9E-107 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_16975 d8bc8c4da11c620b91cfb9de6a851716 428 Gene3D G3DSA:3.40.50.10540 15 340 4.6E-107 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_16975 d8bc8c4da11c620b91cfb9de6a851716 428 SUPERFAMILY SSF89796 14 427 2.49E-108 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_16975 d8bc8c4da11c620b91cfb9de6a851716 428 Gene3D G3DSA:3.40.50.10540 380 428 8.9E-7 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_01885 af7f3d88174cdb3ee4a5a007e2d3c2ee 277 SUPERFAMILY SSF53850 33 267 4.64E-63 T 11-10-2018 APT56_01885 af7f3d88174cdb3ee4a5a007e2d3c2ee 277 Gene3D G3DSA:3.40.190.10 49 263 5.6E-80 T 11-10-2018 APT56_01885 af7f3d88174cdb3ee4a5a007e2d3c2ee 277 PIRSF PIRSF002854 1 268 3.3E-74 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_01885 af7f3d88174cdb3ee4a5a007e2d3c2ee 277 Gene3D G3DSA:3.40.190.10 112 220 5.6E-80 T 11-10-2018 APT56_01885 af7f3d88174cdb3ee4a5a007e2d3c2ee 277 Pfam PF03180 NLPA lipoprotein 33 265 1.3E-74 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_12285 aef69292daa199d914a05c67e127104a 186 Pfam PF03938 Outer membrane protein (OmpH-like) 31 184 2.0E-36 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 APT56_12285 aef69292daa199d914a05c67e127104a 186 SUPERFAMILY SSF111384 43 184 5.23E-37 T 11-10-2018 APT56_12285 aef69292daa199d914a05c67e127104a 186 PIRSF PIRSF002094 22 186 4.5E-51 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 APT56_12285 aef69292daa199d914a05c67e127104a 186 Gene3D G3DSA:3.30.910.20 43 184 3.5E-41 T 11-10-2018 IPR024930 Skp domain superfamily APT56_12285 aef69292daa199d914a05c67e127104a 186 SMART SM00935 33 185 2.3E-58 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 APT56_13560 a6ce5c0a32fe455d663fbb08703e4636 458 SUPERFAMILY SSF51679 5 438 2.49E-144 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_13560 a6ce5c0a32fe455d663fbb08703e4636 458 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 10 432 4.4E-188 T 11-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 APT56_13560 a6ce5c0a32fe455d663fbb08703e4636 458 Pfam PF00296 Luciferase-like monooxygenase 19 390 1.8E-70 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT56_13560 a6ce5c0a32fe455d663fbb08703e4636 458 Gene3D G3DSA:3.20.20.30 2 451 1.5E-171 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_13560 a6ce5c0a32fe455d663fbb08703e4636 458 PIRSF PIRSF000337 3 447 5.0E-170 T 11-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 APT56_20170 966ee906bb6615cd6a4ae62e82295787 79 Pfam PF11278 Protein of unknown function (DUF3079) 1 50 2.6E-34 T 11-10-2018 IPR021430 Protein of unknown function DUF3079 APT56_03315 139fd41fb3d4d96842f013458ba4e4b3 313 Gene3D G3DSA:3.40.1190.20 3 311 8.4E-104 T 11-10-2018 IPR029056 Ribokinase-like APT56_03315 139fd41fb3d4d96842f013458ba4e4b3 313 SUPERFAMILY SSF53613 3 298 8.11E-63 T 11-10-2018 IPR029056 Ribokinase-like APT56_03315 139fd41fb3d4d96842f013458ba4e4b3 313 Pfam PF00294 pfkB family carbohydrate kinase 36 294 9.6E-42 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 3.6E-28 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 3.6E-28 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 3.6E-28 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.6E-28 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 3.6E-28 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 Gene3D G3DSA:3.50.50.60 143 260 3.9E-114 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10785 3bec9fa7f76e44833c554569662337de 452 SUPERFAMILY SSF51905 5 366 4.83E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10785 3bec9fa7f76e44833c554569662337de 452 TIGRFAM TIGR01424 gluta_reduc_2: glutathione-disulfide reductase 3 447 1.8E-183 T 11-10-2018 IPR006324 Glutathione-disulphide reductase GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 APT56_10785 3bec9fa7f76e44833c554569662337de 452 Gene3D G3DSA:3.50.50.60 5 317 3.9E-114 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10785 3bec9fa7f76e44833c554569662337de 452 Gene3D G3DSA:3.30.390.30 337 452 7.4E-43 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_10785 3bec9fa7f76e44833c554569662337de 452 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 317 7.6E-69 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PIRSF PIRSF000350 2 443 1.1E-82 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 APT56_10785 3bec9fa7f76e44833c554569662337de 452 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 446 1.9E-35 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT56_10785 3bec9fa7f76e44833c554569662337de 452 SUPERFAMILY SSF55424 335 447 5.33E-36 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_10785 3bec9fa7f76e44833c554569662337de 452 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 421 441 7.4E-67 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 7.4E-67 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 7.4E-67 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 7.4E-67 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 7.4E-67 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 7.4E-67 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 7.4E-67 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 7.4E-67 T 11-10-2018 APT56_10785 3bec9fa7f76e44833c554569662337de 452 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 399 414 7.4E-67 T 11-10-2018 APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 SUPERFAMILY SSF48013 33 164 3.66E-10 T 11-10-2018 IPR035926 NusB-like superfamily APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 Pfam PF01189 16S rRNA methyltransferase RsmB/F 254 441 1.4E-48 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 Gene3D G3DSA:3.30.70.1170 188 243 1.9E-15 T 11-10-2018 APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 Gene3D G3DSA:3.40.50.150 244 444 1.8E-56 T 11-10-2018 APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 SUPERFAMILY SSF53335 157 443 6.03E-68 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 426 443 1.6E-22 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 264 274 1.6E-22 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 382 398 1.6E-22 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 235 249 1.6E-22 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 332 344 1.6E-22 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 331 342 - T 11-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 Gene3D G3DSA:1.10.287.730 161 185 1.6E-5 T 11-10-2018 APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 108 444 5.7E-85 T 11-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 APT56_26465 64bc0e85816d2ad5fa52eb5b4bdeb632 445 Gene3D G3DSA:1.10.940.10 19 160 8.7E-6 T 11-10-2018 IPR035926 NusB-like superfamily APT56_25710 591765ee9c312ab3db052ff4b7c6f89e 382 PIRSF PIRSF000138 1 379 7.8E-125 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_25710 591765ee9c312ab3db052ff4b7c6f89e 382 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 272 278 - T 11-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_25710 591765ee9c312ab3db052ff4b7c6f89e 382 SUPERFAMILY SSF51395 4 374 1.16E-88 T 11-10-2018 APT56_25710 591765ee9c312ab3db052ff4b7c6f89e 382 Gene3D G3DSA:3.20.20.70 2 381 3.9E-126 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_25710 591765ee9c312ab3db052ff4b7c6f89e 382 Pfam PF01070 FMN-dependent dehydrogenase 12 375 3.5E-126 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 APT56_19640 1d3757867eb03abc0539b58349fb76d1 320 SUPERFAMILY SSF51735 8 187 1.97E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19640 1d3757867eb03abc0539b58349fb76d1 320 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 187 211 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_19640 1d3757867eb03abc0539b58349fb76d1 320 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 280 1.9E-16 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_19640 1d3757867eb03abc0539b58349fb76d1 320 Gene3D G3DSA:3.40.50.720 2 190 4.6E-53 T 11-10-2018 APT56_19640 1d3757867eb03abc0539b58349fb76d1 320 SUPERFAMILY SSF48179 190 262 2.55E-14 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_19640 1d3757867eb03abc0539b58349fb76d1 320 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 10 185 4.1E-46 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_19640 1d3757867eb03abc0539b58349fb76d1 320 Gene3D G3DSA:1.10.1040.10 191 315 3.8E-41 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_24790 7caf2dd45059586d8195df8008681c2f 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 162 2.7E-6 T 11-10-2018 APT56_24790 7caf2dd45059586d8195df8008681c2f 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 2.7E-6 T 11-10-2018 APT56_24790 7caf2dd45059586d8195df8008681c2f 400 Gene3D G3DSA:2.40.30.10 186 345 7.0E-120 T 11-10-2018 APT56_24790 7caf2dd45059586d8195df8008681c2f 400 SUPERFAMILY SSF51905 1 400 7.99E-54 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_24790 7caf2dd45059586d8195df8008681c2f 400 Gene3D G3DSA:3.50.50.60 4 397 7.0E-120 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_24790 7caf2dd45059586d8195df8008681c2f 400 Pfam PF03486 HI0933-like protein 2 398 9.6E-136 T 11-10-2018 APT56_24790 7caf2dd45059586d8195df8008681c2f 400 SUPERFAMILY SSF160996 187 345 1.96E-38 T 11-10-2018 APT56_24790 7caf2dd45059586d8195df8008681c2f 400 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 4 398 4.9E-115 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like APT56_24790 7caf2dd45059586d8195df8008681c2f 400 Gene3D G3DSA:1.10.8.260 263 328 7.0E-120 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily APT56_00975 5aef582e4619bc88ab8a1fba8428c276 93 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 49 9.9E-10 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain APT56_00975 5aef582e4619bc88ab8a1fba8428c276 93 Gene3D G3DSA:1.10.10.1100 1 51 6.3E-18 T 11-10-2018 APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 Gene3D G3DSA:3.40.50.970 57 467 1.4E-114 T 11-10-2018 APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 108 292 1.2E-6 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 SUPERFAMILY SSF52518 58 466 1.71E-120 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 SUPERFAMILY SSF52518 472 697 3.83E-94 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 PIRSF PIRSF000156 1 884 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 Gene3D G3DSA:3.40.50.970 471 703 7.4E-106 T 11-10-2018 APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 SUPERFAMILY SSF52922 699 879 1.06E-55 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 Gene3D G3DSA:3.40.50.920 704 884 4.8E-71 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_10775 b90c35a8d29415ad73703cf8d01539b0 885 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 9 881 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 Gene3D G3DSA:1.10.10.10 14 99 3.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 SUPERFAMILY SSF46785 7 122 2.8E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 SUPERFAMILY SSF53850 103 273 1.18E-18 T 11-10-2018 APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 Gene3D G3DSA:3.40.190.10 105 174 3.5E-17 T 11-10-2018 APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 Pfam PF03466 LysR substrate binding domain 101 297 7.6E-19 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 Gene3D G3DSA:3.40.190.10 175 272 3.5E-17 T 11-10-2018 APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 74 1.6E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11365 062bbf56ff2432e7eb3f8f08241c7f99 337 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26290 af1c43240cf4bb99ca68a178202d137f 506 Pfam PF13193 AMP-binding enzyme C-terminal domain 420 493 2.6E-15 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_26290 af1c43240cf4bb99ca68a178202d137f 506 Pfam PF00501 AMP-binding enzyme 23 410 1.4E-79 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_26290 af1c43240cf4bb99ca68a178202d137f 506 SUPERFAMILY SSF56801 13 503 1.83E-123 T 11-10-2018 APT56_26290 af1c43240cf4bb99ca68a178202d137f 506 Gene3D G3DSA:3.40.50.12780 5 406 1.6E-90 T 11-10-2018 APT56_26290 af1c43240cf4bb99ca68a178202d137f 506 ProSitePatterns PS00455 Putative AMP-binding domain signature. 163 174 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_26290 af1c43240cf4bb99ca68a178202d137f 506 Gene3D G3DSA:3.30.300.310 407 506 9.8E-29 T 11-10-2018 APT56_01025 867f78a9943aac086dcd9f9f379b9012 402 Pfam PF01979 Amidohydrolase family 57 395 9.7E-31 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_01025 867f78a9943aac086dcd9f9f379b9012 402 Gene3D G3DSA:3.20.20.140 63 355 7.5E-113 T 11-10-2018 APT56_01025 867f78a9943aac086dcd9f9f379b9012 402 SUPERFAMILY SSF51556 61 354 5.9E-86 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_01025 867f78a9943aac086dcd9f9f379b9012 402 Gene3D G3DSA:2.30.40.10 16 395 7.5E-113 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_01025 867f78a9943aac086dcd9f9f379b9012 402 SUPERFAMILY SSF51338 4 399 9.22E-12 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_12700 760fc5bcb5fbe8adf6dee5d0955cbac0 181 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 181 37.035 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APT56_12700 760fc5bcb5fbe8adf6dee5d0955cbac0 181 Gene3D G3DSA:3.30.1130.10 51 181 9.1E-61 T 11-10-2018 APT56_12700 760fc5bcb5fbe8adf6dee5d0955cbac0 181 Gene3D G3DSA:1.10.286.10 1 50 2.1E-20 T 11-10-2018 APT56_12700 760fc5bcb5fbe8adf6dee5d0955cbac0 181 Pfam PF01227 GTP cyclohydrolase I 4 180 2.9E-75 T 11-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APT56_12700 760fc5bcb5fbe8adf6dee5d0955cbac0 181 SUPERFAMILY SSF55620 3 181 2.08E-78 T 11-10-2018 APT56_12700 760fc5bcb5fbe8adf6dee5d0955cbac0 181 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 108 118 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APT56_12700 760fc5bcb5fbe8adf6dee5d0955cbac0 181 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 4 181 7.9E-75 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APT56_12700 760fc5bcb5fbe8adf6dee5d0955cbac0 181 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 60 76 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 SMART SM00938 4 105 3.7E-68 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 PRINTS PR00340 P-II protein signature 23 41 4.4E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 PRINTS PR00340 P-II protein signature 52 75 4.4E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 PRINTS PR00340 P-II protein signature 2 17 4.4E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 PRINTS PR00340 P-II protein signature 83 103 4.4E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 SUPERFAMILY SSF54913 2 112 3.81E-45 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 Gene3D G3DSA:3.30.70.120 1 112 4.0E-48 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 PIRSF PIRSF039144 1 112 9.8E-55 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 APT56_11605 1b7c73db06952c43f245f46d59e98d64 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.8E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 Pfam PF00557 Metallopeptidase family M24 15 243 1.7E-55 T 11-10-2018 IPR000994 Peptidase M24 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 SUPERFAMILY SSF55920 6 255 2.09E-94 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 71 84 1.4E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 163 175 1.4E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 93 109 1.4E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 194 206 1.4E-21 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 169 187 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 Hamap MF_01974 Methionine aminopeptidase [map]. 5 252 40.515 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 Gene3D G3DSA:3.90.230.10 3 254 2.1E-108 T 11-10-2018 APT56_16255 ab6033c6983cd41aec2e7d4ab6b66a90 263 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 6 250 8.1E-95 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_04230 32802442265e69bc8f629fbbc8339158 370 PIRSF PIRSF009283 1 367 6.2E-124 T 11-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 APT56_04230 32802442265e69bc8f629fbbc8339158 370 SUPERFAMILY SSF54593 7 353 2.72E-82 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_04230 32802442265e69bc8f629fbbc8339158 370 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 16 365 1.1E-118 T 11-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 APT56_04230 32802442265e69bc8f629fbbc8339158 370 Gene3D G3DSA:3.10.180.10 170 367 1.3E-68 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_04230 32802442265e69bc8f629fbbc8339158 370 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 8 153 5.6E-65 T 11-10-2018 APT56_04230 32802442265e69bc8f629fbbc8339158 370 Gene3D G3DSA:3.10.180.10 6 164 2.7E-54 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_04230 32802442265e69bc8f629fbbc8339158 370 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 176 286 9.6E-14 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_17615 03b91175af07d15e47ff34dd538dbddd 617 Pfam PF00501 AMP-binding enzyme 23 482 1.7E-90 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_17615 03b91175af07d15e47ff34dd538dbddd 617 Gene3D G3DSA:3.40.50.12780 343 475 7.7E-34 T 11-10-2018 APT56_17615 03b91175af07d15e47ff34dd538dbddd 617 SUPERFAMILY SSF56801 17 614 1.96E-118 T 11-10-2018 APT56_17615 03b91175af07d15e47ff34dd538dbddd 617 Gene3D G3DSA:3.40.50.12780 14 342 1.8E-54 T 11-10-2018 APT56_17615 03b91175af07d15e47ff34dd538dbddd 617 ProSitePatterns PS00455 Putative AMP-binding domain signature. 201 212 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_00885 b86181b5acfe363982e03514020412fb 319 Gene3D G3DSA:3.40.50.1820 2 319 3.5E-98 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_00885 b86181b5acfe363982e03514020412fb 319 SUPERFAMILY SSF53474 58 317 2.48E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 Pfam PF02203 Tar ligand binding domain homologue 1 152 8.9E-14 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 481 6.0E-56 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 SUPERFAMILY SSF47170 25 177 4.32E-14 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 Gene3D G3DSA:1.10.287.950 213 515 1.8E-95 T 11-10-2018 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 SMART SM00283 266 513 7.2E-98 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 5.5E-66 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 5.5E-66 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 5.5E-66 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 5.5E-66 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 5.5E-66 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 SMART SM00304 213 265 2.7E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 Pfam PF00672 HAMP domain 213 261 6.6E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12035 1121584c0baa26ea6c8ec933ea5d431f 631 SUPERFAMILY SSF58104 233 518 1.07E-77 T 11-10-2018 APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 Gene3D G3DSA:3.30.70.1530 40 110 4.2E-21 T 11-10-2018 APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 96 109 2.4E-27 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 136 149 2.4E-27 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 116 131 2.4E-27 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 45 55 2.4E-27 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 184 196 2.4E-27 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 25 212 5.8E-69 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 Pfam PF01514 Secretory protein of YscJ/FliF family 29 204 3.0E-32 T 11-10-2018 IPR006182 Secretory protein YscJ/FliF APT56_03740 e68f8ff68f3284a8092ff3ccef19ac3f 281 Gene3D G3DSA:3.30.300.30 112 219 4.2E-35 T 11-10-2018 APT56_00865 abafa9c68c788d98c5c7a4c74de53b4a 355 SUPERFAMILY SSF56281 15 352 4.06E-69 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_00865 abafa9c68c788d98c5c7a4c74de53b4a 355 Gene3D G3DSA:1.10.10.10 298 347 1.1E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00865 abafa9c68c788d98c5c7a4c74de53b4a 355 SMART SM00849 42 267 1.7E-22 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_00865 abafa9c68c788d98c5c7a4c74de53b4a 355 Pfam PF00753 Metallo-beta-lactamase superfamily 42 267 2.6E-23 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_00865 abafa9c68c788d98c5c7a4c74de53b4a 355 Gene3D G3DSA:3.60.15.10 23 295 1.7E-52 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_06800 af0440d7c39652ce67f336519b3a8937 409 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 3 406 1.3E-197 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 APT56_06800 af0440d7c39652ce67f336519b3a8937 409 Gene3D G3DSA:3.40.47.10 256 398 1.1E-48 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_06800 af0440d7c39652ce67f336519b3a8937 409 SUPERFAMILY SSF53901 2 251 8.51E-84 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_06800 af0440d7c39652ce67f336519b3a8937 409 SMART SM00825 Beta-ketoacyl synthase 5 409 4.8E-15 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APT56_06800 af0440d7c39652ce67f336519b3a8937 409 SUPERFAMILY SSF53901 213 408 2.41E-67 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_06800 af0440d7c39652ce67f336519b3a8937 409 PIRSF PIRSF000447 1 409 4.2E-184 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 APT56_06800 af0440d7c39652ce67f336519b3a8937 409 Gene3D G3DSA:3.40.47.10 1 255 1.7E-98 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_06800 af0440d7c39652ce67f336519b3a8937 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 366 3.8E-32 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal APT56_06800 af0440d7c39652ce67f336519b3a8937 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 246 7.5E-65 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal APT56_06800 af0440d7c39652ce67f336519b3a8937 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site APT56_07100 188fd24edf26c481371cd0e6ed010cf7 281 SUPERFAMILY SSF56300 10 247 9.08E-32 T 11-10-2018 APT56_07100 188fd24edf26c481371cd0e6ed010cf7 281 Gene3D G3DSA:3.60.21.10 9 250 1.5E-18 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_07100 188fd24edf26c481371cd0e6ed010cf7 281 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 12 225 5.6E-10 T 11-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 APT56_10430 837a0546331410186bcfa57fbcb8744c 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 160 324 6.4E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_10430 837a0546331410186bcfa57fbcb8744c 339 Gene3D G3DSA:1.10.3720.10 134 329 1.8E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_10430 837a0546331410186bcfa57fbcb8744c 339 SUPERFAMILY SSF161098 137 314 2.49E-24 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02855 08e4aaf2a925fae49206c53e98cf8485 350 Gene3D G3DSA:2.60.120.10 8 350 5.8E-130 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_02855 08e4aaf2a925fae49206c53e98cf8485 350 SUPERFAMILY SSF51182 11 348 3.82E-115 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_02855 08e4aaf2a925fae49206c53e98cf8485 350 TIGRFAM TIGR02272 gentisate_1_2: gentisate 1,2-dioxygenase 10 348 4.1E-174 T 11-10-2018 IPR011960 Gentisate 1,2-dioxygenase APT56_02855 08e4aaf2a925fae49206c53e98cf8485 350 Pfam PF07883 Cupin domain 94 165 4.9E-24 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_09495 a0497042857b31c7db77eb556142df11 964 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 64 75 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_09495 a0497042857b31c7db77eb556142df11 964 PRINTS PR00986 Valyl-tRNA synthetase signature 524 542 3.0E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT56_09495 a0497042857b31c7db77eb556142df11 964 PRINTS PR00986 Valyl-tRNA synthetase signature 57 68 3.0E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT56_09495 a0497042857b31c7db77eb556142df11 964 PRINTS PR00986 Valyl-tRNA synthetase signature 264 281 3.0E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT56_09495 a0497042857b31c7db77eb556142df11 964 PRINTS PR00986 Valyl-tRNA synthetase signature 493 514 3.0E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT56_09495 a0497042857b31c7db77eb556142df11 964 PRINTS PR00986 Valyl-tRNA synthetase signature 380 393 3.0E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT56_09495 a0497042857b31c7db77eb556142df11 964 Hamap MF_02004 Valine--tRNA ligase [valS]. 19 963 15.37 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT56_09495 a0497042857b31c7db77eb556142df11 964 Gene3D G3DSA:1.10.730.10 613 838 1.7E-67 T 11-10-2018 APT56_09495 a0497042857b31c7db77eb556142df11 964 Gene3D G3DSA:3.40.50.620 334 573 3.3E-74 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_09495 a0497042857b31c7db77eb556142df11 964 SUPERFAMILY SSF52374 20 659 2.92E-133 T 11-10-2018 APT56_09495 a0497042857b31c7db77eb556142df11 964 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 32 649 1.3E-200 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_09495 a0497042857b31c7db77eb556142df11 964 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 898 962 1.8E-21 T 11-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 APT56_09495 a0497042857b31c7db77eb556142df11 964 SUPERFAMILY SSF47323 660 913 2.62E-60 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_09495 a0497042857b31c7db77eb556142df11 964 Gene3D G3DSA:3.40.50.620 20 222 4.7E-60 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_09495 a0497042857b31c7db77eb556142df11 964 Pfam PF08264 Anticodon-binding domain of tRNA 691 843 5.4E-38 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 APT56_09495 a0497042857b31c7db77eb556142df11 964 SUPERFAMILY SSF46589 898 962 4.71E-16 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 APT56_09495 a0497042857b31c7db77eb556142df11 964 Gene3D G3DSA:1.10.287.380 892 963 1.3E-15 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 APT56_09495 a0497042857b31c7db77eb556142df11 964 TIGRFAM TIGR00422 valS: valine--tRNA ligase 20 944 0.0 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APT56_09495 a0497042857b31c7db77eb556142df11 964 SUPERFAMILY SSF50677 212 375 1.31E-57 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APT56_05345 023ab85e7a8efd047ae258d6ce9c628f 368 PRINTS PR00184 Neisseria sp. porin signature 317 341 6.2E-5 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_05345 023ab85e7a8efd047ae258d6ce9c628f 368 PRINTS PR00184 Neisseria sp. porin signature 157 174 6.2E-5 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_05345 023ab85e7a8efd047ae258d6ce9c628f 368 PRINTS PR00184 Neisseria sp. porin signature 59 84 6.2E-5 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_05345 023ab85e7a8efd047ae258d6ce9c628f 368 Pfam PF13609 Gram-negative porin 5 343 4.6E-47 T 11-10-2018 APT56_05345 023ab85e7a8efd047ae258d6ce9c628f 368 Gene3D G3DSA:2.40.160.10 20 368 3.4E-68 T 11-10-2018 IPR023614 Porin domain superfamily APT56_05345 023ab85e7a8efd047ae258d6ce9c628f 368 SUPERFAMILY SSF56935 29 368 6.72E-58 T 11-10-2018 APT56_07010 b1284e4eee287624408dbb50e75e7312 291 SUPERFAMILY SSF46689 7 79 3.05E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_07010 b1284e4eee287624408dbb50e75e7312 291 SUPERFAMILY SSF53697 101 265 6.45E-24 T 11-10-2018 APT56_07010 b1284e4eee287624408dbb50e75e7312 291 Gene3D G3DSA:1.10.10.10 3 83 4.1E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07010 b1284e4eee287624408dbb50e75e7312 291 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 78 2.6E-13 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 APT56_07010 b1284e4eee287624408dbb50e75e7312 291 Gene3D G3DSA:3.40.50.10490 99 281 1.9E-31 T 11-10-2018 APT56_07010 b1284e4eee287624408dbb50e75e7312 291 Pfam PF01380 SIS domain 135 243 1.5E-14 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_10590 e8f222d02dfac1fff894d83a1ede2141 775 SUPERFAMILY SSF82866 612 772 3.27E-19 T 11-10-2018 APT56_10590 e8f222d02dfac1fff894d83a1ede2141 775 SUPERFAMILY SSF82866 192 404 1.03E-14 T 11-10-2018 APT56_04885 ec0234ae3fd7946e7e2373efc52ca7a4 327 PIRSF PIRSF017082 1 326 4.3E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04885 ec0234ae3fd7946e7e2373efc52ca7a4 327 Gene3D G3DSA:3.40.190.10 129 252 1.9E-114 T 11-10-2018 APT56_04885 ec0234ae3fd7946e7e2373efc52ca7a4 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 323 2.0E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04885 ec0234ae3fd7946e7e2373efc52ca7a4 327 SUPERFAMILY SSF53850 115 288 1.76E-5 T 11-10-2018 APT56_04885 ec0234ae3fd7946e7e2373efc52ca7a4 327 Gene3D G3DSA:3.40.190.150 29 312 1.9E-114 T 11-10-2018 APT56_20195 6759bf17d059d17bed6bcd00f021c3b0 347 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 14 319 7.9E-103 T 11-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 APT56_20195 6759bf17d059d17bed6bcd00f021c3b0 347 Pfam PF00581 Rhodanese-like domain 11 125 1.1E-8 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_20195 6759bf17d059d17bed6bcd00f021c3b0 347 Gene3D G3DSA:3.40.250.10 12 130 3.3E-31 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_20195 6759bf17d059d17bed6bcd00f021c3b0 347 SMART SM00450 1 129 1.9E-10 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_20195 6759bf17d059d17bed6bcd00f021c3b0 347 SUPERFAMILY SSF52540 139 254 1.88E-7 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_20195 6759bf17d059d17bed6bcd00f021c3b0 347 SUPERFAMILY SSF52821 17 132 4.98E-21 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 453 2.5E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 2.5E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 2.5E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 SUPERFAMILY SSF55874 322 454 1.22E-23 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 Gene3D G3DSA:1.10.287.130 236 313 2.9E-9 T 11-10-2018 APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 SMART SM00387 355 456 3.9E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 309 1.0E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 SUPERFAMILY SSF47384 239 313 1.29E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 455 6.4E-12 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 SMART SM00388 250 316 8.9E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_19420 384a8f9279f31ba0653f13efb811d17d 460 Gene3D G3DSA:3.30.565.10 320 457 3.8E-21 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_05750 c62699559e64047e5ec98acc17d13ba6 138 Gene3D G3DSA:3.30.1330.40 26 137 4.8E-34 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_05750 c62699559e64047e5ec98acc17d13ba6 138 Pfam PF01042 Endoribonuclease L-PSP 29 135 2.7E-26 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_05750 c62699559e64047e5ec98acc17d13ba6 138 SUPERFAMILY SSF55298 27 136 3.77E-34 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_16050 8a274e6865c8c44e48d94d6380f24787 409 SMART SM00860 33 166 0.0011 T 11-10-2018 IPR018958 Knr4/Smi1-like domain APT56_26240 d824d48a15db1599be5d6802b7234613 212 SMART SM01007 9 187 3.0E-49 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_26240 d824d48a15db1599be5d6802b7234613 212 SUPERFAMILY SSF53639 4 209 1.02E-53 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_26240 d824d48a15db1599be5d6802b7234613 212 Gene3D G3DSA:3.40.225.10 3 211 9.3E-54 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_26240 d824d48a15db1599be5d6802b7234613 212 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 186 2.1E-42 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_08980 b657c925f0f894f229db3c87880de28d 306 Gene3D G3DSA:1.10.3720.10 14 300 6.0E-55 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08980 b657c925f0f894f229db3c87880de28d 306 SUPERFAMILY SSF161098 15 292 2.35E-56 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08980 b657c925f0f894f229db3c87880de28d 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 287 5.6E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 Pfam PF00072 Response regulator receiver domain 5 117 7.0E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 SUPERFAMILY SSF52172 1 132 6.12E-35 T 11-10-2018 IPR011006 CheY-like superfamily APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 Gene3D G3DSA:3.40.50.12740 3 218 5.2E-69 T 11-10-2018 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 SMART SM00421 155 212 1.0E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 SMART SM00448 3 116 7.0E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 SUPERFAMILY SSF46894 150 218 1.12E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 ProSitePatterns PS00622 LuxR-type HTH domain signature. 172 199 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 7.6E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 7.6E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 7.6E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_12945 e8e903fe5978710c5ae87d890bb27133 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 212 1.5E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_10490 38b47892402a09cc7a7de28a9730142b 895 SUPERFAMILY SSF53955 61 270 3.66E-73 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_10490 38b47892402a09cc7a7de28a9730142b 895 Gene3D G3DSA:1.10.3810.10 84 273 2.0E-83 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_10490 38b47892402a09cc7a7de28a9730142b 895 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 84 734 6.3E-168 T 11-10-2018 APT56_10490 38b47892402a09cc7a7de28a9730142b 895 Gene3D G3DSA:3.90.1310.20 69 314 2.0E-83 T 11-10-2018 APT56_10490 38b47892402a09cc7a7de28a9730142b 895 Pfam PF00905 Penicillin binding protein transpeptidase domain 450 703 1.7E-37 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT56_10490 38b47892402a09cc7a7de28a9730142b 895 SUPERFAMILY SSF56601 230 757 1.08E-115 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_10490 38b47892402a09cc7a7de28a9730142b 895 Gene3D G3DSA:3.40.710.10 366 741 5.9E-101 T 11-10-2018 APT56_10490 38b47892402a09cc7a7de28a9730142b 895 Pfam PF17092 Penicillin-binding protein OB-like domain 339 446 1.0E-16 T 11-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_10490 38b47892402a09cc7a7de28a9730142b 895 Pfam PF00912 Transglycosylase 76 249 3.6E-61 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_10490 38b47892402a09cc7a7de28a9730142b 895 Gene3D G3DSA:3.40.710.10 315 330 2.0E-83 T 11-10-2018 APT56_26810 551da1e9a72a713cbd84845e74437da2 262 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 251 2.5E-19 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase APT56_26810 551da1e9a72a713cbd84845e74437da2 262 Gene3D G3DSA:3.60.10.10 1 260 1.5E-82 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APT56_26810 551da1e9a72a713cbd84845e74437da2 262 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 2 256 7.6E-73 T 11-10-2018 APT56_26810 551da1e9a72a713cbd84845e74437da2 262 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 2 258 4.0E-77 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 APT56_26810 551da1e9a72a713cbd84845e74437da2 262 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 29 38 - T 11-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 APT56_26810 551da1e9a72a713cbd84845e74437da2 262 SUPERFAMILY SSF56219 2 259 2.22E-75 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APT56_06405 1bbbedf256b4a7fdd0d4adc588a84c8e 418 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 418 49.777 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06405 1bbbedf256b4a7fdd0d4adc588a84c8e 418 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 6 418 2.0E-184 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06405 1bbbedf256b4a7fdd0d4adc588a84c8e 418 SUPERFAMILY SSF56762 16 418 8.63E-138 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06405 1bbbedf256b4a7fdd0d4adc588a84c8e 418 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 418 9.8E-123 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06405 1bbbedf256b4a7fdd0d4adc588a84c8e 418 Gene3D G3DSA:1.10.645.20 4 418 9.3E-173 T 11-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06405 1bbbedf256b4a7fdd0d4adc588a84c8e 418 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 43 54 - T 11-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_24955 28ce42a1ace427bbd16705a9268d4670 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 2.6E-96 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APT56_24955 28ce42a1ace427bbd16705a9268d4670 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 5 213 3.2E-44 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APT56_00600 4304800a2b1f8db86f64c77c1dc85a52 175 SUPERFAMILY SSF82199 8 150 1.96E-41 T 11-10-2018 APT56_00600 4304800a2b1f8db86f64c77c1dc85a52 175 Pfam PF00856 SET domain 21 124 1.6E-18 T 11-10-2018 IPR001214 SET domain GO:0005515 APT56_00600 4304800a2b1f8db86f64c77c1dc85a52 175 Gene3D G3DSA:2.170.270.10 6 172 3.6E-44 T 11-10-2018 APT56_00600 4304800a2b1f8db86f64c77c1dc85a52 175 SMART SM00317 9 130 9.4E-28 T 11-10-2018 IPR001214 SET domain GO:0005515 APT56_17455 3a99bdb2f9f6423c6c5493dfc85aa6dc 381 Gene3D G3DSA:3.40.50.2000 247 378 6.2E-7 T 11-10-2018 APT56_17455 3a99bdb2f9f6423c6c5493dfc85aa6dc 381 Gene3D G3DSA:1.25.40.10 1 102 3.1E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_17455 3a99bdb2f9f6423c6c5493dfc85aa6dc 381 SUPERFAMILY SSF53756 119 356 1.19E-24 T 11-10-2018 APT56_17455 3a99bdb2f9f6423c6c5493dfc85aa6dc 381 SUPERFAMILY SSF48452 3 88 1.9E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 254 622 3.1E-60 T 11-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 Gene3D G3DSA:3.50.50.60 253 622 4.3E-69 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 SUPERFAMILY SSF53335 148 239 1.89E-5 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 9 623 20.994 T 11-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 SUPERFAMILY SSF51905 254 613 8.8E-21 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 Pfam PF01266 FAD dependent oxidoreductase 254 604 2.1E-26 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 Gene3D G3DSA:3.40.50.150 12 243 3.8E-87 T 11-10-2018 APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 117 236 2.7E-35 T 11-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 APT56_04470 153dab90a8530fcc9be3dfde6eb48e76 623 Gene3D G3DSA:3.30.9.10 337 564 4.3E-69 T 11-10-2018 APT56_01075 a4108c20703c32faad428c0b4ae2754c 157 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 8 146 1.4E-29 T 11-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like APT56_01075 a4108c20703c32faad428c0b4ae2754c 157 Gene3D G3DSA:3.30.1330.40 1 155 8.7E-58 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_01075 a4108c20703c32faad428c0b4ae2754c 157 SUPERFAMILY SSF55298 4 153 2.2E-51 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_20035 8ba79eed2addca6465c13eb13e10ec4f 182 Gene3D G3DSA:3.10.129.10 18 160 7.1E-26 T 11-10-2018 APT56_20035 8ba79eed2addca6465c13eb13e10ec4f 182 Pfam PF14539 Domain of unknown function (DUF4442) 20 155 2.5E-16 T 11-10-2018 IPR027961 Protein of unknown function DUF4442 APT56_20035 8ba79eed2addca6465c13eb13e10ec4f 182 SUPERFAMILY SSF54637 11 155 2.28E-20 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_01275 5ae9458e7825214720ac7f29317ee380 278 SUPERFAMILY SSF52540 13 242 2.88E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01275 5ae9458e7825214720ac7f29317ee380 278 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_01275 5ae9458e7825214720ac7f29317ee380 278 Pfam PF00005 ABC transporter 28 177 2.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_01275 5ae9458e7825214720ac7f29317ee380 278 Gene3D G3DSA:3.40.50.300 12 276 3.2E-65 T 11-10-2018 APT56_01275 5ae9458e7825214720ac7f29317ee380 278 SMART SM00382 37 225 3.2E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17610 4aa18a8b6495af78e9a268e9cfb7f953 384 ProSitePatterns PS00737 Thiolases signature 2. 330 346 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 APT56_17610 4aa18a8b6495af78e9a268e9cfb7f953 384 Gene3D G3DSA:3.40.47.10 6 267 2.0E-125 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_17610 4aa18a8b6495af78e9a268e9cfb7f953 384 Pfam PF00108 Thiolase, N-terminal domain 5 252 4.7E-59 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_17610 4aa18a8b6495af78e9a268e9cfb7f953 384 SUPERFAMILY SSF53901 3 384 3.33E-66 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_17610 4aa18a8b6495af78e9a268e9cfb7f953 384 PIRSF PIRSF000429 1 384 6.6E-109 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_17610 4aa18a8b6495af78e9a268e9cfb7f953 384 Pfam PF02803 Thiolase, C-terminal domain 262 383 2.9E-36 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_17610 4aa18a8b6495af78e9a268e9cfb7f953 384 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 382 1.2E-116 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_17610 4aa18a8b6495af78e9a268e9cfb7f953 384 Gene3D G3DSA:3.40.47.10 127 381 2.0E-125 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_12665 c108caf0fc97ab0eeff951ecae50a137 507 SMART SM00345 31 90 3.0E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_12665 c108caf0fc97ab0eeff951ecae50a137 507 SUPERFAMILY SSF46785 23 93 2.34E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12665 c108caf0fc97ab0eeff951ecae50a137 507 Pfam PF00392 Bacterial regulatory proteins, gntR family 28 90 6.6E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_12665 c108caf0fc97ab0eeff951ecae50a137 507 Gene3D G3DSA:1.10.10.10 24 93 1.0E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12665 c108caf0fc97ab0eeff951ecae50a137 507 Gene3D G3DSA:3.40.640.10 129 493 4.3E-94 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_12665 c108caf0fc97ab0eeff951ecae50a137 507 SUPERFAMILY SSF53383 118 501 1.41E-77 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_12665 c108caf0fc97ab0eeff951ecae50a137 507 Pfam PF00155 Aminotransferase class I and II 170 481 9.0E-16 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_13270 706a9dfe6576d937fd2259dd8a07a0e2 386 Pfam PF04982 HPP family 54 173 7.2E-35 T 11-10-2018 IPR007065 HPP APT56_13270 706a9dfe6576d937fd2259dd8a07a0e2 386 SMART SM00116 317 364 0.013 T 11-10-2018 IPR000644 CBS domain APT56_13270 706a9dfe6576d937fd2259dd8a07a0e2 386 SMART SM00116 247 295 0.088 T 11-10-2018 IPR000644 CBS domain APT56_13270 706a9dfe6576d937fd2259dd8a07a0e2 386 Gene3D G3DSA:3.10.580.10 237 381 1.2E-25 T 11-10-2018 APT56_13270 706a9dfe6576d937fd2259dd8a07a0e2 386 SUPERFAMILY SSF54631 228 364 6.92E-26 T 11-10-2018 APT56_13270 706a9dfe6576d937fd2259dd8a07a0e2 386 Pfam PF00571 CBS domain 310 364 4.4E-8 T 11-10-2018 IPR000644 CBS domain APT56_13270 706a9dfe6576d937fd2259dd8a07a0e2 386 Pfam PF00571 CBS domain 241 292 7.1E-8 T 11-10-2018 IPR000644 CBS domain APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 5 303 1.7E-98 T 11-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 Gene3D G3DSA:3.30.420.150 113 292 1.6E-84 T 11-10-2018 APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 Pfam PF02541 Ppx/GppA phosphatase family 28 304 8.9E-76 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 SUPERFAMILY SSF109604 310 491 1.73E-40 T 11-10-2018 APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 SUPERFAMILY SSF53067 134 305 1.08E-42 T 11-10-2018 APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 Gene3D G3DSA:3.30.420.40 6 300 1.6E-84 T 11-10-2018 APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 SUPERFAMILY SSF53067 5 130 2.36E-34 T 11-10-2018 APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 PIRSF PIRSF001267 1 494 4.8E-189 T 11-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 APT56_21865 bf050b8312bc3b2f912ce1ca95c5cee0 495 Gene3D G3DSA:1.10.3210.10 307 494 1.6E-52 T 11-10-2018 APT56_05755 881fc0be03b86a7150542b6f36d15a10 493 SUPERFAMILY SSF51556 56 414 7.82E-80 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_05755 881fc0be03b86a7150542b6f36d15a10 493 Gene3D G3DSA:2.30.40.10 2 428 1.1E-169 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_05755 881fc0be03b86a7150542b6f36d15a10 493 Gene3D G3DSA:3.30.1490.130 283 339 1.1E-169 T 11-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 APT56_05755 881fc0be03b86a7150542b6f36d15a10 493 SUPERFAMILY SSF51338 1 473 3.82E-19 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_05755 881fc0be03b86a7150542b6f36d15a10 493 Gene3D G3DSA:3.20.20.140 55 414 1.1E-169 T 11-10-2018 APT56_05755 881fc0be03b86a7150542b6f36d15a10 493 Pfam PF07969 Amidohydrolase family 44 458 2.4E-44 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_09070 2473ee6fd91ef67af8eb207c5c370a44 363 Pfam PF00534 Glycosyl transferases group 1 168 334 7.6E-36 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_09070 2473ee6fd91ef67af8eb207c5c370a44 363 Pfam PF13439 Glycosyltransferase Family 4 12 158 4.6E-13 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_09070 2473ee6fd91ef67af8eb207c5c370a44 363 SUPERFAMILY SSF53756 5 355 1.55E-76 T 11-10-2018 APT56_09070 2473ee6fd91ef67af8eb207c5c370a44 363 Gene3D G3DSA:3.40.50.2000 1 161 1.4E-14 T 11-10-2018 APT56_09070 2473ee6fd91ef67af8eb207c5c370a44 363 Gene3D G3DSA:3.40.50.2000 162 335 8.8E-50 T 11-10-2018 APT56_04090 571a27a027b4c5047f83d39a8ee1e60b 230 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 109 226 3.6E-32 T 11-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal APT56_04090 571a27a027b4c5047f83d39a8ee1e60b 230 SUPERFAMILY SSF48452 111 228 1.52E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_04090 571a27a027b4c5047f83d39a8ee1e60b 230 Gene3D G3DSA:1.25.40.10 109 230 5.6E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_04090 571a27a027b4c5047f83d39a8ee1e60b 230 Pfam PF13174 Tetratricopeptide repeat 184 216 6.0E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_04090 571a27a027b4c5047f83d39a8ee1e60b 230 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 7 229 17.902 T 11-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 APT56_04090 571a27a027b4c5047f83d39a8ee1e60b 230 Pfam PF13432 Tetratricopeptide repeat 113 180 2.0E-10 T 11-10-2018 APT56_18560 1f56c804cc7e54abb2622ed67c21cf42 321 Gene3D G3DSA:3.40.50.880 1 203 6.7E-63 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_18560 1f56c804cc7e54abb2622ed67c21cf42 321 SUPERFAMILY SSF52317 3 195 1.26E-48 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_18560 1f56c804cc7e54abb2622ed67c21cf42 321 Pfam PF12833 Helix-turn-helix domain 235 313 9.7E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_18560 1f56c804cc7e54abb2622ed67c21cf42 321 Pfam PF01965 DJ-1/PfpI family 4 174 8.8E-22 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_18560 1f56c804cc7e54abb2622ed67c21cf42 321 SUPERFAMILY SSF46689 265 316 1.08E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18560 1f56c804cc7e54abb2622ed67c21cf42 321 SUPERFAMILY SSF46689 212 259 5.08E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18560 1f56c804cc7e54abb2622ed67c21cf42 321 Gene3D G3DSA:1.10.10.60 212 319 9.4E-24 T 11-10-2018 APT56_18560 1f56c804cc7e54abb2622ed67c21cf42 321 SMART SM00342 229 312 8.8E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_23275 a0ad0be3253d91b226cf7fd607530595 237 Pfam PF01476 LysM domain 35 77 2.4E-15 T 11-10-2018 IPR018392 LysM domain APT56_23275 a0ad0be3253d91b226cf7fd607530595 237 SUPERFAMILY SSF51261 34 232 1.26E-44 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_23275 a0ad0be3253d91b226cf7fd607530595 237 Gene3D G3DSA:2.70.70.10 105 234 8.1E-32 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_23275 a0ad0be3253d91b226cf7fd607530595 237 Pfam PF01551 Peptidase family M23 137 230 5.5E-28 T 11-10-2018 IPR016047 Peptidase M23 APT56_23275 a0ad0be3253d91b226cf7fd607530595 237 SMART SM00257 34 78 9.2E-16 T 11-10-2018 IPR018392 LysM domain APT56_23275 a0ad0be3253d91b226cf7fd607530595 237 Gene3D G3DSA:3.10.350.10 25 92 1.9E-17 T 11-10-2018 IPR036779 LysM domain superfamily APT56_26685 0585322d5db5b006832a524d97ddc659 204 SUPERFAMILY SSF46626 6 80 5.8E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_26685 0585322d5db5b006832a524d97ddc659 204 Gene3D G3DSA:1.10.760.10 2 75 2.7E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_26685 0585322d5db5b006832a524d97ddc659 204 PIRSF PIRSF000005 1 180 2.2E-61 T 11-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 APT56_26685 0585322d5db5b006832a524d97ddc659 204 SUPERFAMILY SSF46626 87 178 2.22E-17 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_26685 0585322d5db5b006832a524d97ddc659 204 Pfam PF00034 Cytochrome c 6 57 8.3E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_26685 0585322d5db5b006832a524d97ddc659 204 Pfam PF00034 Cytochrome c 109 178 3.8E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_26685 0585322d5db5b006832a524d97ddc659 204 Gene3D G3DSA:1.10.760.10 84 177 3.2E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.1E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 Pfam PF01037 Lrp/AsnC ligand binding domain 67 139 9.9E-19 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 SUPERFAMILY SSF46785 1 81 7.91E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 7.6E-20 T 11-10-2018 APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 SMART SM00344 1 110 4.4E-42 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 Gene3D G3DSA:3.30.70.920 54 137 1.2E-24 T 11-10-2018 APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 Gene3D G3DSA:1.10.10.10 1 53 3.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 SUPERFAMILY SSF54909 61 149 1.29E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_04420 94d10d5c410a7e9271e1db2b3fed8fbc 152 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_10380 7de9e6f40ebd3c340f0cd4907bbdb2f4 303 SUPERFAMILY SSF103481 47 143 1.05E-12 T 11-10-2018 APT56_10380 7de9e6f40ebd3c340f0cd4907bbdb2f4 303 SUPERFAMILY SSF103481 188 287 1.26E-8 T 11-10-2018 APT56_10380 7de9e6f40ebd3c340f0cd4907bbdb2f4 303 Pfam PF00892 EamA-like transporter family 14 141 7.3E-22 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_10380 7de9e6f40ebd3c340f0cd4907bbdb2f4 303 Pfam PF00892 EamA-like transporter family 154 286 6.0E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 SUPERFAMILY SSF49493 117 263 4.45E-19 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 Pfam PF00226 DnaJ domain 5 67 3.9E-28 T 11-10-2018 IPR001623 DnaJ domain APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 PRINTS PR00625 DnaJ domain signature 7 25 8.0E-33 T 11-10-2018 IPR001623 DnaJ domain APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 PRINTS PR00625 DnaJ domain signature 42 62 8.0E-33 T 11-10-2018 IPR001623 DnaJ domain APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 PRINTS PR00625 DnaJ domain signature 62 81 8.0E-33 T 11-10-2018 IPR001623 DnaJ domain APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 PRINTS PR00625 DnaJ domain signature 25 40 8.0E-33 T 11-10-2018 IPR001623 DnaJ domain APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 374 41.938 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 SMART SM00271 4 62 5.3E-32 T 11-10-2018 IPR001623 DnaJ domain APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 SUPERFAMILY SSF49493 261 346 6.15E-24 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 Pfam PF01556 DnaJ C terminal domain 123 335 3.3E-41 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-10-2018 IPR018253 DnaJ domain, conserved site APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 SUPERFAMILY SSF57938 136 212 4.45E-22 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 351 9.7E-138 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 Gene3D G3DSA:2.60.260.20 258 363 2.6E-30 T 11-10-2018 APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 SUPERFAMILY SSF46565 1 109 6.02E-38 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 Gene3D G3DSA:2.10.230.10 141 211 3.7E-25 T 11-10-2018 APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 Gene3D G3DSA:1.10.287.110 1 113 2.2E-38 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APT56_05600 66b0ab4327ebf87b7054029795ba2c26 376 Pfam PF00684 DnaJ central domain 149 209 6.9E-14 T 11-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 APT56_13590 4e38a9c0c8cb1bea2caba585d00635d6 710 SUPERFAMILY SSF56300 79 322 1.03E-23 T 11-10-2018 APT56_13590 4e38a9c0c8cb1bea2caba585d00635d6 710 Gene3D G3DSA:3.60.21.10 82 357 4.3E-14 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_13590 4e38a9c0c8cb1bea2caba585d00635d6 710 Gene3D G3DSA:2.60.120.200 522 708 9.6E-17 T 11-10-2018 APT56_13590 4e38a9c0c8cb1bea2caba585d00635d6 710 Pfam PF00149 Calcineurin-like phosphoesterase 81 310 3.4E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_13590 4e38a9c0c8cb1bea2caba585d00635d6 710 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 540 702 6.6E-14 T 11-10-2018 APT56_13590 4e38a9c0c8cb1bea2caba585d00635d6 710 SUPERFAMILY SSF49899 445 702 3.39E-19 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily APT56_03070 6840c25e6ebde2f70a56b00566736c91 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 125 145 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 APT56_03070 6840c25e6ebde2f70a56b00566736c91 285 Gene3D G3DSA:1.10.12.10 227 285 1.6E-19 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_03070 6840c25e6ebde2f70a56b00566736c91 285 SUPERFAMILY SSF52096 25 284 2.49E-73 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_03070 6840c25e6ebde2f70a56b00566736c91 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 33 284 4.9E-41 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_03070 6840c25e6ebde2f70a56b00566736c91 285 Gene3D G3DSA:3.90.226.10 14 226 1.2E-62 T 11-10-2018 APT56_06525 7f111b4f6fc8a1c4e6eebc62627cfe32 438 Pfam PF07690 Major Facilitator Superfamily 11 349 6.0E-19 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_06525 7f111b4f6fc8a1c4e6eebc62627cfe32 438 Gene3D G3DSA:1.20.1250.20 2 412 7.3E-27 T 11-10-2018 APT56_06525 7f111b4f6fc8a1c4e6eebc62627cfe32 438 SUPERFAMILY SSF103473 3 413 1.83E-26 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 424 41.654 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 424 9.4E-167 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 Gene3D G3DSA:3.90.600.10 332 434 1.8E-33 T 11-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 SUPERFAMILY SSF51246 331 424 6.8E-30 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 298 1.1E-75 T 11-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 SUPERFAMILY SSF56059 102 323 1.66E-61 T 11-10-2018 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 333 422 2.9E-28 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 SMART SM01209 101 298 2.1E-134 T 11-10-2018 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 SMART SM01210 332 424 5.6E-52 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 Gene3D G3DSA:3.30.470.20 189 331 1.9E-55 T 11-10-2018 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 3.9E-36 T 11-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 SUPERFAMILY SSF52440 1 101 5.61E-35 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 Gene3D G3DSA:3.40.50.20 1 93 6.7E-36 T 11-10-2018 APT56_09215 f603c86a7b984745a0a64cdfcecbb695 435 Gene3D G3DSA:3.30.1490.20 119 188 5.0E-28 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_02610 804b7f0de7f66ea9ed9f5dd729b3fd1b 164 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 56 164 6.0E-11 T 11-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 APT56_02610 804b7f0de7f66ea9ed9f5dd729b3fd1b 164 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 141 157 - T 11-10-2018 IPR028871 Blue (type 1) copper protein, binding site APT56_02610 804b7f0de7f66ea9ed9f5dd729b3fd1b 164 SUPERFAMILY SSF49503 53 163 2.95E-30 T 11-10-2018 IPR008972 Cupredoxin APT56_02610 804b7f0de7f66ea9ed9f5dd729b3fd1b 164 Gene3D G3DSA:2.60.40.420 28 164 1.1E-28 T 11-10-2018 IPR008972 Cupredoxin APT56_02610 804b7f0de7f66ea9ed9f5dd729b3fd1b 164 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 63 162 1.0E-5 T 11-10-2018 APT56_25210 f0914c9c8e4870837806b224b5026dad 397 Gene3D G3DSA:3.30.1540.10 228 325 2.9E-130 T 11-10-2018 APT56_25210 f0914c9c8e4870837806b224b5026dad 397 Gene3D G3DSA:3.40.50.10540 6 390 2.9E-130 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_25210 f0914c9c8e4870837806b224b5026dad 397 SUPERFAMILY SSF89796 5 396 1.07E-129 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_25210 f0914c9c8e4870837806b224b5026dad 397 Pfam PF02515 CoA-transferase family III 6 373 7.7E-124 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_25685 57a382d73c0fbb981ee489d68dbd17c8 235 Pfam PF03551 Transcriptional regulator PadR-like family 77 145 9.5E-17 T 11-10-2018 IPR005149 Transcription regulator PadR, N-terminal APT56_25685 57a382d73c0fbb981ee489d68dbd17c8 235 Gene3D G3DSA:1.10.10.10 61 171 1.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25685 57a382d73c0fbb981ee489d68dbd17c8 235 SUPERFAMILY SSF46785 72 220 5.79E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20650 3599ec9e5acf7c468b1ed472dd2c693a 236 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 23 136 3.4E-20 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 APT56_20650 3599ec9e5acf7c468b1ed472dd2c693a 236 SUPERFAMILY SSF49354 20 136 3.66E-24 T 11-10-2018 IPR008962 PapD-like superfamily APT56_20650 3599ec9e5acf7c468b1ed472dd2c693a 236 Gene3D G3DSA:2.60.40.10 24 137 2.6E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_20650 3599ec9e5acf7c468b1ed472dd2c693a 236 SUPERFAMILY SSF49584 139 218 6.15E-8 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily APT56_20650 3599ec9e5acf7c468b1ed472dd2c693a 236 PRINTS PR00969 Pili chaperone signature 118 133 1.1E-7 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 APT56_20650 3599ec9e5acf7c468b1ed472dd2c693a 236 PRINTS PR00969 Pili chaperone signature 68 89 1.1E-7 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 APT56_20650 3599ec9e5acf7c468b1ed472dd2c693a 236 PRINTS PR00969 Pili chaperone signature 152 167 1.1E-7 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 APT56_12650 dc299d79373030e145862891d0309a8f 130 SUPERFAMILY SSF54427 8 125 6.19E-30 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_12650 dc299d79373030e145862891d0309a8f 130 Gene3D G3DSA:3.10.450.50 1 122 4.3E-31 T 11-10-2018 APT56_12650 dc299d79373030e145862891d0309a8f 130 Pfam PF12680 SnoaL-like domain 12 114 4.6E-24 T 11-10-2018 IPR037401 SnoaL-like domain APT56_12675 30622eac763f286aef448f9125402632 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 266 1.3E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12675 30622eac763f286aef448f9125402632 275 SUPERFAMILY SSF161098 75 261 3.66E-35 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12675 30622eac763f286aef448f9125402632 275 Gene3D G3DSA:1.10.3720.10 72 267 9.7E-28 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15225 ee74e784efd267f4492cecc5515b5720 332 Gene3D G3DSA:3.40.190.10 127 322 9.0E-22 T 11-10-2018 APT56_15225 ee74e784efd267f4492cecc5515b5720 332 SUPERFAMILY SSF53850 26 247 2.61E-38 T 11-10-2018 APT56_15225 ee74e784efd267f4492cecc5515b5720 332 Pfam PF09084 NMT1/THI5 like 39 246 9.4E-25 T 11-10-2018 IPR015168 SsuA/THI5-like APT56_15225 ee74e784efd267f4492cecc5515b5720 332 SMART SM00062 26 248 0.0058 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_15225 ee74e784efd267f4492cecc5515b5720 332 Gene3D G3DSA:3.40.190.10 22 119 2.3E-15 T 11-10-2018 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 18 438 1.2E-136 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 SUPERFAMILY SSF55205 9 437 6.02E-121 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 ProSitePatterns PS00885 EPSP synthase signature 2. 350 368 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 Gene3D G3DSA:3.65.10.10 247 432 6.3E-130 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 Gene3D G3DSA:3.65.10.10 23 246 6.3E-130 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 13 440 33.129 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 PIRSF PIRSF000505 8 439 8.2E-134 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APT56_07560 759d1e3e7dd886dbd33ef77e5f6c284a 440 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 14 433 9.5E-118 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 SMART SM00564 106 137 94.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 SMART SM00564 67 98 22.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 SMART SM00564 190 222 270.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 SMART SM00564 146 177 0.0014 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 SMART SM00564 322 353 0.26 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 SUPERFAMILY SSF50998 29 375 6.8E-69 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 Gene3D G3DSA:2.130.10.10 27 383 2.2E-79 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 11 381 2.9E-125 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 Pfam PF13360 PQQ-like domain 80 311 2.5E-48 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat APT56_09530 37717405c1f3f03f38e6dd6dbe20641d 385 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 7 384 37.544 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB APT56_00610 6cef4024244c20262bee5f51521d3240 156 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_00610 6cef4024244c20262bee5f51521d3240 156 Gene3D G3DSA:3.30.70.920 57 140 4.2E-24 T 11-10-2018 APT56_00610 6cef4024244c20262bee5f51521d3240 156 SUPERFAMILY SSF46785 2 63 3.27E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00610 6cef4024244c20262bee5f51521d3240 156 Gene3D G3DSA:1.10.10.10 1 56 4.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00610 6cef4024244c20262bee5f51521d3240 156 SUPERFAMILY SSF54909 66 147 4.29E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_00610 6cef4024244c20262bee5f51521d3240 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 1.7E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_00610 6cef4024244c20262bee5f51521d3240 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 1.7E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_00610 6cef4024244c20262bee5f51521d3240 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 1.7E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_00610 6cef4024244c20262bee5f51521d3240 156 Pfam PF13404 AsnC-type helix-turn-helix domain 3 44 2.1E-17 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_00610 6cef4024244c20262bee5f51521d3240 156 Pfam PF01037 Lrp/AsnC ligand binding domain 69 142 3.2E-24 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_00610 6cef4024244c20262bee5f51521d3240 156 SMART SM00344 3 112 1.1E-41 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_26150 42899514f8671e482cb4651aea3ced89 360 Pfam PF03462 PCRF domain 15 203 2.2E-71 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 APT56_26150 42899514f8671e482cb4651aea3ced89 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT56_26150 42899514f8671e482cb4651aea3ced89 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 356 8.6E-161 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 APT56_26150 42899514f8671e482cb4651aea3ced89 360 Gene3D G3DSA:1.20.58.410 4 95 1.2E-5 T 11-10-2018 APT56_26150 42899514f8671e482cb4651aea3ced89 360 Gene3D G3DSA:3.30.70.1660 107 214 2.9E-44 T 11-10-2018 APT56_26150 42899514f8671e482cb4651aea3ced89 360 SUPERFAMILY SSF75620 12 353 1.31E-136 T 11-10-2018 APT56_26150 42899514f8671e482cb4651aea3ced89 360 SMART SM00937 63 178 2.3E-65 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 APT56_26150 42899514f8671e482cb4651aea3ced89 360 Gene3D G3DSA:3.30.70.1660 288 360 1.3E-15 T 11-10-2018 APT56_26150 42899514f8671e482cb4651aea3ced89 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 41.131 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 APT56_26150 42899514f8671e482cb4651aea3ced89 360 Gene3D G3DSA:3.30.160.20 215 287 3.4E-36 T 11-10-2018 APT56_26150 42899514f8671e482cb4651aea3ced89 360 Pfam PF00472 RF-1 domain 214 321 4.3E-43 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT56_00400 11d85130bae42ee74ab9683445a2525e 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 252 6.5E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00400 11d85130bae42ee74ab9683445a2525e 264 SUPERFAMILY SSF161098 7 253 3.53E-56 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00400 11d85130bae42ee74ab9683445a2525e 264 Gene3D G3DSA:1.10.3720.10 6 262 1.9E-55 T 11-10-2018 IPR035906 MetI-like superfamily APT56_04225 f4284df7bc618d5908bae62aa2b480ae 184 Pfam PF01625 Peptide methionine sulfoxide reductase 12 164 2.5E-59 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_04225 f4284df7bc618d5908bae62aa2b480ae 184 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 11 163 1.5E-53 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_04225 f4284df7bc618d5908bae62aa2b480ae 184 Gene3D G3DSA:3.30.1060.10 1 173 4.0E-65 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_04225 f4284df7bc618d5908bae62aa2b480ae 184 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 9 168 34.6 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_04225 f4284df7bc618d5908bae62aa2b480ae 184 SUPERFAMILY SSF55068 6 175 1.44E-70 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_13065 4426a5504034886a0b0b05c5af7652f3 328 PIRSF PIRSF017082 1 328 3.9E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13065 4426a5504034886a0b0b05c5af7652f3 328 SUPERFAMILY SSF53850 114 290 3.26E-15 T 11-10-2018 APT56_13065 4426a5504034886a0b0b05c5af7652f3 328 Gene3D G3DSA:3.40.190.10 129 253 6.8E-117 T 11-10-2018 APT56_13065 4426a5504034886a0b0b05c5af7652f3 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 325 7.6E-97 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13065 4426a5504034886a0b0b05c5af7652f3 328 Gene3D G3DSA:3.40.190.150 32 317 6.8E-117 T 11-10-2018 APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 SMART SM00421 122 179 2.7E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 Gene3D G3DSA:1.10.10.10 120 180 1.2E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 95 2.0E-9 T 11-10-2018 IPR000014 PAS domain APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 SMART SM00091 5 71 9.7E-4 T 11-10-2018 IPR000014 PAS domain APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 Gene3D G3DSA:3.30.450.20 9 118 1.3E-16 T 11-10-2018 APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 Pfam PF00196 Bacterial regulatory proteins, luxR family 124 177 3.4E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 SUPERFAMILY SSF46894 106 180 4.08E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 Pfam PF13426 PAS domain 25 99 3.7E-8 T 11-10-2018 IPR000014 PAS domain APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 167 2.2E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 155 2.2E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 125 139 2.2E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19045 bf2ecf2070d0fde4b76e7f68e6f29bb7 186 SUPERFAMILY SSF55785 23 110 6.81E-12 T 11-10-2018 IPR035965 PAS domain superfamily APT56_01365 af5e324299ebe53b555c0892726bda63 287 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 282 1.4E-137 T 11-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 APT56_01365 af5e324299ebe53b555c0892726bda63 287 SUPERFAMILY SSF53474 5 283 6.22E-89 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_01365 af5e324299ebe53b555c0892726bda63 287 Pfam PF00756 Putative esterase 25 277 3.8E-53 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 APT56_01365 af5e324299ebe53b555c0892726bda63 287 Gene3D G3DSA:3.40.50.1820 5 283 6.5E-88 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 Pfam PF14559 Tetratricopeptide repeat 560 620 8.4E-7 T 11-10-2018 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 Pfam PF13432 Tetratricopeptide repeat 204 260 0.013 T 11-10-2018 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 Pfam PF13432 Tetratricopeptide repeat 332 401 0.0011 T 11-10-2018 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 Pfam PF13432 Tetratricopeptide repeat 500 548 1.3E-6 T 11-10-2018 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 Gene3D G3DSA:1.25.40.10 114 267 2.6E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 Gene3D G3DSA:1.25.40.10 449 621 7.5E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 SMART SM00028 328 361 160.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 SMART SM00028 227 260 23.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 SMART SM00028 479 512 18.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 SMART SM00028 581 614 0.18 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 SMART SM00028 410 443 150.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 SMART SM00028 513 547 15.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 SUPERFAMILY SSF48452 227 402 3.16E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 SUPERFAMILY SSF48452 449 616 3.96E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_24520 95cb9ae91cc140ce7dd55c0097f9c2d1 628 Gene3D G3DSA:1.25.40.10 268 448 2.4E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_25475 d714b1c33fa4a597890da0980bc9bb12 100 SUPERFAMILY SSF47413 29 91 1.64E-7 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_25475 d714b1c33fa4a597890da0980bc9bb12 100 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 4 90 3.8E-30 T 11-10-2018 IPR014057 Uncharacterized protein HI1420 APT56_07225 d9ec67b907e4d1aa3eb85247376e4e74 314 Pfam PF01522 Polysaccharide deacetylase 80 167 6.7E-12 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT56_07225 d9ec67b907e4d1aa3eb85247376e4e74 314 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 10 310 5.6E-154 T 11-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 APT56_07225 d9ec67b907e4d1aa3eb85247376e4e74 314 Gene3D G3DSA:3.20.20.370 2 314 1.3E-111 T 11-10-2018 APT56_07225 d9ec67b907e4d1aa3eb85247376e4e74 314 SUPERFAMILY SSF88713 10 311 5.84E-92 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_12730 f7db02769db249ef256eccf5aee1b3b8 464 Gene3D G3DSA:1.10.10.10 7 105 3.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12730 f7db02769db249ef256eccf5aee1b3b8 464 Gene3D G3DSA:3.90.1150.10 113 451 5.4E-81 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_12730 f7db02769db249ef256eccf5aee1b3b8 464 Pfam PF00155 Aminotransferase class I and II 127 450 2.9E-39 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_12730 f7db02769db249ef256eccf5aee1b3b8 464 SMART SM00345 11 70 2.0E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_12730 f7db02769db249ef256eccf5aee1b3b8 464 Gene3D G3DSA:3.40.640.10 141 358 5.4E-81 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_12730 f7db02769db249ef256eccf5aee1b3b8 464 SUPERFAMILY SSF46785 4 73 2.4E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12730 f7db02769db249ef256eccf5aee1b3b8 464 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 6.9E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_12730 f7db02769db249ef256eccf5aee1b3b8 464 SUPERFAMILY SSF53383 84 461 2.26E-82 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_12640 5ec1cc12a9b9005f10205d56fa2d301c 558 SUPERFAMILY SSF51338 11 553 6.48E-13 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_12640 5ec1cc12a9b9005f10205d56fa2d301c 558 SUPERFAMILY SSF51556 71 514 4.25E-26 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_12640 5ec1cc12a9b9005f10205d56fa2d301c 558 Gene3D G3DSA:3.10.310.70 91 220 1.4E-102 T 11-10-2018 APT56_12640 5ec1cc12a9b9005f10205d56fa2d301c 558 Gene3D G3DSA:3.20.20.140 72 513 1.4E-102 T 11-10-2018 APT56_12640 5ec1cc12a9b9005f10205d56fa2d301c 558 Pfam PF07969 Amidohydrolase family 68 553 4.9E-71 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_12640 5ec1cc12a9b9005f10205d56fa2d301c 558 Gene3D G3DSA:2.30.40.10 23 531 1.4E-102 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_01380 bdc4f11ce4cf5009c90b39408bcc4d32 279 SUPERFAMILY SSF56300 17 264 3.96E-50 T 11-10-2018 APT56_01380 bdc4f11ce4cf5009c90b39408bcc4d32 279 Pfam PF00149 Calcineurin-like phosphoesterase 18 206 2.2E-13 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_01380 bdc4f11ce4cf5009c90b39408bcc4d32 279 Gene3D G3DSA:3.60.21.10 2 277 3.4E-73 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_01380 bdc4f11ce4cf5009c90b39408bcc4d32 279 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 37.131 T 11-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 APT56_01380 bdc4f11ce4cf5009c90b39408bcc4d32 279 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 4.0E-21 T 11-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 APT56_16405 ebc7fc631e4cc30ca648c7676425b814 217 Pfam PF00857 Isochorismatase family 30 203 4.4E-44 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_16405 ebc7fc631e4cc30ca648c7676425b814 217 Gene3D G3DSA:3.40.50.850 8 212 3.9E-61 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_16405 ebc7fc631e4cc30ca648c7676425b814 217 SUPERFAMILY SSF52499 16 208 3.4E-54 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_05420 c46b6088ce195803876ead4e31642777 127 Gene3D G3DSA:3.40.30.10 9 113 3.6E-13 T 11-10-2018 APT56_05420 c46b6088ce195803876ead4e31642777 127 SUPERFAMILY SSF52833 23 95 4.65E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_05420 c46b6088ce195803876ead4e31642777 127 Pfam PF00085 Thioredoxin 15 87 8.3E-10 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 APT56_01670 66ca656bfba1e12a0a2449860d9a61fc 472 PIRSF PIRSF002744 1 467 1.5E-99 T 11-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 APT56_01670 66ca656bfba1e12a0a2449860d9a61fc 472 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 20 442 1.0E-52 T 11-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 APT56_01670 66ca656bfba1e12a0a2449860d9a61fc 472 Gene3D G3DSA:1.10.4160.10 9 448 2.5E-47 T 11-10-2018 IPR038271 Purine-cytosine permease superfamily APT56_24820 cc7d2e966cb6a26b8d94fe694fd0cc7e 187 Hamap MF_00146 dCTP deaminase [dcd]. 2 187 27.905 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 APT56_24820 cc7d2e966cb6a26b8d94fe694fd0cc7e 187 Gene3D G3DSA:2.70.40.10 1 158 2.8E-49 T 11-10-2018 IPR036157 dUTPase-like superfamily APT56_24820 cc7d2e966cb6a26b8d94fe694fd0cc7e 187 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 13 186 5.6E-47 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 APT56_24820 cc7d2e966cb6a26b8d94fe694fd0cc7e 187 SUPERFAMILY SSF51283 3 186 2.36E-52 T 11-10-2018 IPR036157 dUTPase-like superfamily APT56_24820 cc7d2e966cb6a26b8d94fe694fd0cc7e 187 Pfam PF00692 dUTPase 81 183 7.4E-7 T 11-10-2018 IPR029054 dUTPase-like APT56_06670 06df7240e450e25ab22dd792c5a2da7f 391 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 163 388 5.7E-71 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 APT56_06670 06df7240e450e25ab22dd792c5a2da7f 391 Gene3D G3DSA:3.20.140.10 1 390 2.5E-150 T 11-10-2018 APT56_06670 06df7240e450e25ab22dd792c5a2da7f 391 SUPERFAMILY SSF54675 1 136 8.24E-44 T 11-10-2018 APT56_06670 06df7240e450e25ab22dd792c5a2da7f 391 SUPERFAMILY SSF51690 117 387 5.1E-88 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APT56_06670 06df7240e450e25ab22dd792c5a2da7f 391 PIRSF PIRSF000484 1 376 1.3E-67 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 APT56_06670 06df7240e450e25ab22dd792c5a2da7f 391 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 390 45.921 T 11-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APT56_06670 06df7240e450e25ab22dd792c5a2da7f 391 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 2 389 2.1E-146 T 11-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 122 7.6E-37 T 11-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 Gene3D G3DSA:3.40.50.720 2 260 1.3E-96 T 11-10-2018 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 Gene3D G3DSA:3.30.360.10 124 231 1.3E-96 T 11-10-2018 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 147 164 - T 11-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 SUPERFAMILY SSF55347 124 233 2.4E-35 T 11-10-2018 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 PIRSF PIRSF000161 1 263 1.9E-84 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 125 261 6.0E-41 T 11-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 262 1.3E-88 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 SUPERFAMILY SSF51735 1 263 1.58E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_05545 45cb3cc2a03af68ab801339c4b70e199 263 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 262 33.789 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.2E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 6.2E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 6.2E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 6.2E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 6.2E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.2E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 5.3E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 5.3E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 5.3E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 Gene3D G3DSA:3.40.50.720 2 249 1.3E-74 T 11-10-2018 APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 5.5E-64 T 11-10-2018 APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 176 9.9E-5 T 11-10-2018 APT56_11310 00a5fbf4fd9e93900b82d191dde15115 254 SUPERFAMILY SSF51735 8 247 5.93E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_05025 8409a8af3f089b2da2e6c6e83a746721 210 Gene3D G3DSA:3.30.470.10 1 76 7.7E-14 T 11-10-2018 APT56_05025 8409a8af3f089b2da2e6c6e83a746721 210 Pfam PF01063 Amino-transferase class IV 5 206 6.5E-34 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 APT56_05025 8409a8af3f089b2da2e6c6e83a746721 210 Gene3D G3DSA:3.20.10.10 82 209 3.2E-35 T 11-10-2018 APT56_05025 8409a8af3f089b2da2e6c6e83a746721 210 SUPERFAMILY SSF56752 4 206 1.83E-39 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 Gene3D G3DSA:1.10.540.10 21 129 6.0E-23 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 SUPERFAMILY SSF56645 26 229 1.2E-46 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 Gene3D G3DSA:1.20.140.10 230 401 1.8E-55 T 11-10-2018 APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 Gene3D G3DSA:2.40.110.10 130 229 1.2E-30 T 11-10-2018 APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 SUPERFAMILY SSF47203 243 397 9.34E-23 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 14 403 1.5E-179 T 11-10-2018 IPR023922 Sulphate-starvation-induced SfnB APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 142 221 1.2E-8 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 247 380 2.4E-20 T 11-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 PIRSF PIRSF016578 9 398 3.6E-34 T 11-10-2018 APT56_01835 103f41dddec1f26ac13bb4ee1b77f199 405 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 26 127 9.1E-11 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_13025 eca29e04478b8a12cd186f37d8d3a075 457 SUPERFAMILY SSF50939 147 259 1.22E-9 T 11-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 APT56_13025 eca29e04478b8a12cd186f37d8d3a075 457 SUPERFAMILY SSF110296 182 419 1.23E-8 T 11-10-2018 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 SUPERFAMILY SSF56784 9 231 1.36E-42 T 11-10-2018 IPR036412 HAD-like superfamily APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 Pfam PF13419 Haloacid dehalogenase-like hydrolase 102 202 2.9E-13 T 11-10-2018 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 Gene3D G3DSA:1.10.150.750 23 101 3.6E-53 T 11-10-2018 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 117 182 3.7E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 4.2E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 191 204 4.2E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 116 129 4.2E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 10 206 7.3E-41 T 11-10-2018 IPR006328 L-2-Haloacid dehalogenase GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 12 192 6.7E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_21570 99744229cda3acea7a63a476e3cefdfc 236 Gene3D G3DSA:3.40.50.1000 10 223 3.6E-53 T 11-10-2018 IPR023214 HAD superfamily APT56_01880 595e2af008736bbde07ef111ab8a85f0 220 Gene3D G3DSA:1.10.3720.10 12 220 1.5E-40 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01880 595e2af008736bbde07ef111ab8a85f0 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 55 220 6.4E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_01880 595e2af008736bbde07ef111ab8a85f0 220 SUPERFAMILY SSF161098 12 205 2.62E-37 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21750 891e39d96fd03b13c92d612a2fe7d752 219 Gene3D G3DSA:3.40.50.150 16 217 1.3E-59 T 11-10-2018 APT56_21750 891e39d96fd03b13c92d612a2fe7d752 219 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 215 1.5E-72 T 11-10-2018 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 APT56_21750 891e39d96fd03b13c92d612a2fe7d752 219 PIRSF PIRSF023956 1 219 4.4E-71 T 11-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 APT56_21750 891e39d96fd03b13c92d612a2fe7d752 219 SUPERFAMILY SSF53335 1 215 2.55E-54 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_21750 891e39d96fd03b13c92d612a2fe7d752 219 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 4 215 1.9E-78 T 11-10-2018 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 APT56_21750 891e39d96fd03b13c92d612a2fe7d752 219 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 217 37.303 T 11-10-2018 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 APT56_07525 1637cfcc072f0e55adbdc597544e617b 242 SUPERFAMILY SSF53335 21 223 4.62E-49 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_07525 1637cfcc072f0e55adbdc597544e617b 242 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 19 242 36.316 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 APT56_07525 1637cfcc072f0e55adbdc597544e617b 242 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 19 237 2.7E-85 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 APT56_07525 1637cfcc072f0e55adbdc597544e617b 242 Gene3D G3DSA:3.40.50.150 19 242 3.1E-77 T 11-10-2018 APT56_07525 1637cfcc072f0e55adbdc597544e617b 242 Pfam PF13489 Methyltransferase domain 59 212 5.0E-27 T 11-10-2018 APT56_08910 918734273a1e9c89db234a77a27fe313 330 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 4.6E-36 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_08910 918734273a1e9c89db234a77a27fe313 330 Gene3D G3DSA:1.10.3720.10 83 313 1.0E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08910 918734273a1e9c89db234a77a27fe313 330 SUPERFAMILY SSF161098 92 305 3.66E-15 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SUPERFAMILY SSF52821 459 554 1.83E-16 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Gene3D G3DSA:2.60.120.10 61 200 6.2E-19 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SUPERFAMILY SSF52821 578 685 4.58E-19 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SUPERFAMILY SSF51182 21 204 7.57E-29 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Gene3D G3DSA:3.40.250.10 329 435 1.8E-19 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SUPERFAMILY SSF52821 208 324 2.49E-23 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SUPERFAMILY SSF52821 308 434 1.13E-27 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SMART SM00450 210 307 1.5E-8 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SMART SM00450 470 567 2.8 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SMART SM00450 581 675 2.6E-5 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13200 88eef685ef8fdbc475047dddc043295e 735 SMART SM00450 332 431 0.048 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Pfam PF00581 Rhodanese-like domain 214 303 3.1E-7 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Pfam PF00581 Rhodanese-like domain 334 426 1.2E-5 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Pfam PF00581 Rhodanese-like domain 486 554 1.9E-4 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Pfam PF00581 Rhodanese-like domain 584 671 1.9E-5 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Gene3D G3DSA:3.40.250.10 465 555 3.7E-16 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Gene3D G3DSA:3.40.250.10 207 314 4.0E-17 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13200 88eef685ef8fdbc475047dddc043295e 735 Gene3D G3DSA:3.40.250.10 580 682 4.9E-15 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_23540 cda92af9ab19012cdc9115fabdcea1c0 167 SUPERFAMILY SSF88659 91 165 2.43E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_23540 cda92af9ab19012cdc9115fabdcea1c0 167 Gene3D G3DSA:1.10.10.10 82 166 4.0E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23540 cda92af9ab19012cdc9115fabdcea1c0 167 Pfam PF08281 Sigma-70, region 4 107 157 2.3E-13 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_23540 cda92af9ab19012cdc9115fabdcea1c0 167 Gene3D G3DSA:1.10.1740.10 5 78 5.1E-6 T 11-10-2018 APT56_23540 cda92af9ab19012cdc9115fabdcea1c0 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 162 3.5E-23 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_23540 cda92af9ab19012cdc9115fabdcea1c0 167 SUPERFAMILY SSF88946 13 91 5.1E-11 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_23540 cda92af9ab19012cdc9115fabdcea1c0 167 Pfam PF04542 Sigma-70 region 2 15 75 1.0E-6 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 SUPERFAMILY SSF158472 159 206 1.11E-5 T 11-10-2018 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 370 1.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 409 1.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 384 1.5E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 SMART SM00387 320 430 5.7E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 274 1.3E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 Gene3D G3DSA:3.30.565.10 283 429 8.5E-31 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 SMART SM00304 157 209 2.9E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 Pfam PF00672 HAMP domain 163 204 1.1E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 SUPERFAMILY SSF47384 194 274 1.1E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 Gene3D G3DSA:1.10.287.130 161 276 7.1E-24 T 11-10-2018 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 428 5.0E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 SMART SM00388 210 275 7.6E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_14645 05cbeb747e3cfc2d7e76da7af0f5a35c 430 SUPERFAMILY SSF55874 265 427 1.02E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_02040 12d8190c370cf42355d3317476d4b765 235 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 8 216 2.0E-61 T 11-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 APT56_02040 12d8190c370cf42355d3317476d4b765 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 4.0E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_02040 12d8190c370cf42355d3317476d4b765 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 4.0E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_02040 12d8190c370cf42355d3317476d4b765 235 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 4.0E-7 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_02040 12d8190c370cf42355d3317476d4b765 235 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 80 192 5.8E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_02040 12d8190c370cf42355d3317476d4b765 235 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 4 222 36.842 T 11-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 APT56_02040 12d8190c370cf42355d3317476d4b765 235 Gene3D G3DSA:3.40.50.1000 7 213 3.4E-56 T 11-10-2018 IPR023214 HAD superfamily APT56_02040 12d8190c370cf42355d3317476d4b765 235 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 106 186 1.8E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_02040 12d8190c370cf42355d3317476d4b765 235 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 192 1.4E-31 T 11-10-2018 APT56_02040 12d8190c370cf42355d3317476d4b765 235 SUPERFAMILY SSF56784 4 216 3.41E-55 T 11-10-2018 IPR036412 HAD-like superfamily APT56_02040 12d8190c370cf42355d3317476d4b765 235 Gene3D G3DSA:1.10.150.240 19 91 3.4E-56 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APT56_02920 5b651e80306bf5bf872c6506dcc7bf39 425 Pfam PF13533 Biotin-lipoyl like 94 139 1.5E-14 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_02920 5b651e80306bf5bf872c6506dcc7bf39 425 Pfam PF13437 HlyD family secretion protein 205 308 7.3E-7 T 11-10-2018 APT56_02920 5b651e80306bf5bf872c6506dcc7bf39 425 Gene3D G3DSA:2.40.420.20 327 395 3.0E-93 T 11-10-2018 APT56_02920 5b651e80306bf5bf872c6506dcc7bf39 425 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 69 397 4.3E-77 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_02920 5b651e80306bf5bf872c6506dcc7bf39 425 Gene3D G3DSA:1.10.287.470 128 201 3.0E-93 T 11-10-2018 APT56_02920 5b651e80306bf5bf872c6506dcc7bf39 425 Gene3D G3DSA:2.40.30.170 84 326 3.0E-93 T 11-10-2018 APT56_02920 5b651e80306bf5bf872c6506dcc7bf39 425 Gene3D G3DSA:2.40.50.100 93 237 3.0E-93 T 11-10-2018 APT56_02920 5b651e80306bf5bf872c6506dcc7bf39 425 SUPERFAMILY SSF111369 84 321 8.37E-59 T 11-10-2018 APT56_11040 4dda807233a670328767c35299ef5e7d 226 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 106 124 8.6E-53 T 11-10-2018 APT56_11040 4dda807233a670328767c35299ef5e7d 226 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 32 53 8.6E-53 T 11-10-2018 APT56_11040 4dda807233a670328767c35299ef5e7d 226 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 81 104 8.6E-53 T 11-10-2018 APT56_11040 4dda807233a670328767c35299ef5e7d 226 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 137 160 8.6E-53 T 11-10-2018 APT56_11040 4dda807233a670328767c35299ef5e7d 226 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 160 179 8.6E-53 T 11-10-2018 APT56_11040 4dda807233a670328767c35299ef5e7d 226 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 198 221 8.6E-53 T 11-10-2018 APT56_11040 4dda807233a670328767c35299ef5e7d 226 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 58 75 8.6E-53 T 11-10-2018 APT56_11040 4dda807233a670328767c35299ef5e7d 226 Pfam PF03379 CcmB protein 9 221 7.5E-62 T 11-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11040 4dda807233a670328767c35299ef5e7d 226 PIRSF PIRSF002764 1 225 2.5E-66 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria APT56_11040 4dda807233a670328767c35299ef5e7d 226 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 11 221 5.7E-58 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria APT56_19510 a3a5bcdf28f1e0298949230ba2f03b73 333 Pfam PF01032 FecCD transport family 8 324 2.4E-86 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APT56_19510 a3a5bcdf28f1e0298949230ba2f03b73 333 Gene3D G3DSA:1.10.3470.10 1 330 2.7E-98 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_19510 a3a5bcdf28f1e0298949230ba2f03b73 333 SUPERFAMILY SSF81345 9 324 8.37E-73 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_24785 0aac97b5c4ce000e936764197de845da 204 SUPERFAMILY SSF46609 2 91 6.68E-36 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 Gene3D G3DSA:1.10.287.990 20 90 8.2E-29 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 165 172 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 90 4.0E-32 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 SUPERFAMILY SSF54719 89 202 1.31E-42 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 198 1.2E-36 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 PIRSF PIRSF000349 1 204 3.0E-78 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 PRINTS PR01703 Manganese superoxide dismutase signature 163 175 2.1E-28 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 2.1E-28 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 2.1E-28 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 2.1E-28 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 2.1E-28 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_24785 0aac97b5c4ce000e936764197de845da 204 Gene3D G3DSA:2.40.500.20 91 204 1.4E-43 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_02110 8c322bee0c043279c646d46501cdaa66 322 SUPERFAMILY SSF53850 109 284 2.04E-13 T 11-10-2018 APT56_02110 8c322bee0c043279c646d46501cdaa66 322 Gene3D G3DSA:3.40.190.150 26 311 1.8E-116 T 11-10-2018 APT56_02110 8c322bee0c043279c646d46501cdaa66 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 317 2.0E-90 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02110 8c322bee0c043279c646d46501cdaa66 322 PIRSF PIRSF017082 5 321 2.7E-93 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02110 8c322bee0c043279c646d46501cdaa66 322 Gene3D G3DSA:3.40.190.10 123 246 1.8E-116 T 11-10-2018 APT56_23195 81aa5563ccbd217786bcd4006574e4e1 321 PIRSF PIRSF017082 1 321 1.1E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_23195 81aa5563ccbd217786bcd4006574e4e1 321 Gene3D G3DSA:3.40.190.150 26 311 6.8E-118 T 11-10-2018 APT56_23195 81aa5563ccbd217786bcd4006574e4e1 321 SUPERFAMILY SSF53850 110 284 7.48E-13 T 11-10-2018 APT56_23195 81aa5563ccbd217786bcd4006574e4e1 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 316 1.2E-97 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_23195 81aa5563ccbd217786bcd4006574e4e1 321 Gene3D G3DSA:3.40.190.10 123 246 6.8E-118 T 11-10-2018 APT56_26665 c4942098f5ed2745e16f6fcb81a357e1 151 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain APT56_26665 c4942098f5ed2745e16f6fcb81a357e1 151 Gene3D G3DSA:3.40.930.10 1 150 7.2E-50 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APT56_26665 c4942098f5ed2745e16f6fcb81a357e1 151 SUPERFAMILY SSF55804 1 146 7.06E-41 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APT56_26665 c4942098f5ed2745e16f6fcb81a357e1 151 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 147 1.7E-31 T 11-10-2018 IPR002178 PTS EIIA type-2 domain APT56_19850 3d7f8a43fc45653e2f53ae879334d15b 336 Pfam PF01544 CorA-like Mg2+ transporter protein 46 332 1.3E-50 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 APT56_19850 3d7f8a43fc45653e2f53ae879334d15b 336 SUPERFAMILY SSF144083 272 333 1.44E-18 T 11-10-2018 APT56_19850 3d7f8a43fc45653e2f53ae879334d15b 336 Gene3D G3DSA:3.30.460.20 5 145 2.1E-12 T 11-10-2018 APT56_19850 3d7f8a43fc45653e2f53ae879334d15b 336 Gene3D G3DSA:1.20.58.340 279 336 1.1E-21 T 11-10-2018 APT56_19850 3d7f8a43fc45653e2f53ae879334d15b 336 SUPERFAMILY SSF143865 15 263 1.57E-49 T 11-10-2018 APT56_19850 3d7f8a43fc45653e2f53ae879334d15b 336 Gene3D G3DSA:1.20.58.340 146 258 4.4E-22 T 11-10-2018 APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 Pfam PF03958 Bacterial type II/III secretion system short domain 167 297 2.7E-16 T 11-10-2018 IPR005644 NolW-like APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 Pfam PF00263 Bacterial type II and III secretion system protein 370 528 9.5E-41 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 259 528 8.8E-82 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 Gene3D G3DSA:3.55.50.30 12 98 2.0E-25 T 11-10-2018 APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 179 196 6.2E-31 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 383 402 6.2E-31 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 417 432 6.2E-31 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 301 321 6.2E-31 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 APT56_03800 81118c4a01c998e64f0610e48b133ce5 629 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 507 526 6.2E-31 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 APT56_23830 9990a074b696c2d169bd574262c91d07 119 Gene3D G3DSA:3.30.530.20 7 116 5.2E-12 T 11-10-2018 IPR023393 START-like domain superfamily APT56_23830 9990a074b696c2d169bd574262c91d07 119 SUPERFAMILY SSF55961 8 98 1.45E-16 T 11-10-2018 APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 3.4E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 3.4E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 3.4E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 9.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 9.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 9.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 9.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 9.5E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 Gene3D G3DSA:3.40.50.720 2 262 5.7E-84 T 11-10-2018 APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 SUPERFAMILY SSF51735 6 260 2.36E-80 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_15595 9cdd54e71fee40563f0e7a2971742929 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 258 1.5E-67 T 11-10-2018 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 SUPERFAMILY SSF47384 190 269 2.94E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 SMART SM00304 153 206 1.1E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 Pfam PF00512 His Kinase A (phospho-acceptor) domain 210 270 8.8E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 SMART SM00387 329 434 3.8E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 SUPERFAMILY SSF55874 329 430 1.57E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 Pfam PF00672 HAMP domain 153 202 1.5E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 SMART SM00388 207 273 1.6E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 334 431 1.4E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 390 1.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 431 1.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 412 1.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 376 1.1E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 Gene3D G3DSA:3.30.565.10 282 435 1.2E-24 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_13465 ea1c7868d3b6f6e2aa52eee9ffd3bbd9 436 Gene3D G3DSA:1.10.287.130 157 273 9.3E-19 T 11-10-2018 APT56_20675 ff9b0d4226143fd25bbe2b3cfecae6aa 321 SUPERFAMILY SSF56317 9 306 4.06E-71 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_20675 ff9b0d4226143fd25bbe2b3cfecae6aa 321 Gene3D G3DSA:3.60.110.10 7 306 3.9E-100 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_20675 ff9b0d4226143fd25bbe2b3cfecae6aa 321 Pfam PF00795 Carbon-nitrogen hydrolase 12 285 1.0E-47 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_05470 9becca0f64e5611fd4d0a75d864df8e3 310 Gene3D G3DSA:3.40.190.10 163 263 2.3E-75 T 11-10-2018 APT56_05470 9becca0f64e5611fd4d0a75d864df8e3 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 9.2E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_05470 9becca0f64e5611fd4d0a75d864df8e3 310 Gene3D G3DSA:3.40.190.10 91 289 2.3E-75 T 11-10-2018 APT56_05470 9becca0f64e5611fd4d0a75d864df8e3 310 Gene3D G3DSA:1.10.10.10 3 89 3.7E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05470 9becca0f64e5611fd4d0a75d864df8e3 310 SUPERFAMILY SSF53850 90 295 8.14E-55 T 11-10-2018 APT56_05470 9becca0f64e5611fd4d0a75d864df8e3 310 Pfam PF03466 LysR substrate binding domain 88 292 2.4E-53 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_05470 9becca0f64e5611fd4d0a75d864df8e3 310 SUPERFAMILY SSF46785 5 84 5.16E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14600 6ff8ad804bb77ca31069317a22258438 371 Gene3D G3DSA:3.40.50.2300 30 348 1.9E-107 T 11-10-2018 APT56_14600 6ff8ad804bb77ca31069317a22258438 371 SUPERFAMILY SSF53822 27 367 8.75E-89 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_14600 6ff8ad804bb77ca31069317a22258438 371 Pfam PF13458 Periplasmic binding protein 28 366 5.5E-57 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_14600 6ff8ad804bb77ca31069317a22258438 371 Gene3D G3DSA:3.40.50.2300 148 276 1.9E-107 T 11-10-2018 APT56_14600 6ff8ad804bb77ca31069317a22258438 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 91 101 4.5E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14600 6ff8ad804bb77ca31069317a22258438 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 4.5E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14600 6ff8ad804bb77ca31069317a22258438 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 281 294 4.5E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14600 6ff8ad804bb77ca31069317a22258438 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 258 276 4.5E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14600 6ff8ad804bb77ca31069317a22258438 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 332 347 4.5E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14600 6ff8ad804bb77ca31069317a22258438 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 4.5E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14600 6ff8ad804bb77ca31069317a22258438 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 4.5E-32 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_01970 9f0a087f1df02917216c2908dbf46af4 179 Pfam PF00578 AhpC/TSA family 45 156 1.4E-18 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_01970 9f0a087f1df02917216c2908dbf46af4 179 Gene3D G3DSA:3.40.30.10 12 178 2.3E-32 T 11-10-2018 APT56_01970 9f0a087f1df02917216c2908dbf46af4 179 SUPERFAMILY SSF52833 43 173 2.78E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_23235 31d1107cb5a67abbb588a633d0daee78 468 Pfam PF00324 Amino acid permease 26 458 6.9E-92 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 APT56_23235 31d1107cb5a67abbb588a633d0daee78 468 ProSitePatterns PS00218 Amino acid permeases signature. 50 80 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 APT56_23235 31d1107cb5a67abbb588a633d0daee78 468 Gene3D G3DSA:1.20.1740.10 16 467 3.4E-60 T 11-10-2018 APT56_23235 31d1107cb5a67abbb588a633d0daee78 468 PIRSF PIRSF006060 9 467 9.7E-64 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_10325 33fccf6ddd67eeda0f0310bd5eaf4a2b 305 Gene3D G3DSA:3.10.310.10 128 290 2.2E-72 T 11-10-2018 APT56_10325 33fccf6ddd67eeda0f0310bd5eaf4a2b 305 PIRSF PIRSF016184 1 301 2.7E-72 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_10325 33fccf6ddd67eeda0f0310bd5eaf4a2b 305 Pfam PF02567 Phenazine biosynthesis-like protein 9 297 3.3E-53 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_10325 33fccf6ddd67eeda0f0310bd5eaf4a2b 305 Gene3D G3DSA:3.10.310.10 7 292 2.2E-72 T 11-10-2018 APT56_10325 33fccf6ddd67eeda0f0310bd5eaf4a2b 305 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 299 2.0E-56 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_10325 33fccf6ddd67eeda0f0310bd5eaf4a2b 305 SUPERFAMILY SSF54506 1 299 2.72E-60 T 11-10-2018 APT56_20585 8f81886e41265f9b60ed2851c9bce864 184 SUPERFAMILY SSF49401 32 184 1.24E-29 T 11-10-2018 IPR008966 Adhesion domain superfamily APT56_20585 8f81886e41265f9b60ed2851c9bce864 184 Gene3D G3DSA:2.60.40.1090 28 184 7.4E-32 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 APT56_20585 8f81886e41265f9b60ed2851c9bce864 184 Pfam PF00419 Fimbrial protein 32 184 6.9E-12 T 11-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 SUPERFAMILY SSF51215 31 169 4.45E-9 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 Pfam PF02311 AraC-like ligand binding domain 31 145 1.1E-4 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 SMART SM00342 207 290 1.2E-30 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 Gene3D G3DSA:1.10.10.60 188 239 5.3E-13 T 11-10-2018 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 Gene3D G3DSA:1.10.10.60 240 295 6.5E-16 T 11-10-2018 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 SUPERFAMILY SSF46689 243 294 1.3E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 Pfam PF12833 Helix-turn-helix domain 214 292 1.4E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 8.5E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 8.5E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 244 286 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_20760 742a8fad9bb36c605e8b275e8f27742c 301 SUPERFAMILY SSF46689 192 238 4.03E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 Gene3D G3DSA:2.60.40.10 6 219 1.4E-56 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 SUPERFAMILY SSF81296 17 108 2.8E-13 T 11-10-2018 IPR014756 Immunoglobulin E-set APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 Gene3D G3DSA:3.20.20.80 222 620 1.0E-160 T 11-10-2018 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 SUPERFAMILY SSF51445 178 614 4.75E-116 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 626 721 1.2E-22 T 11-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 112 719 3.7E-264 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 PIRSF PIRSF000463 9 724 8.1E-271 T 11-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 SUPERFAMILY SSF81296 138 192 1.33E-8 T 11-10-2018 IPR014756 Immunoglobulin E-set APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 SUPERFAMILY SSF51011 621 723 8.46E-33 T 11-10-2018 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 SMART SM00642 249 646 2.0E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 99 723 42.974 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 Pfam PF00128 Alpha amylase, catalytic domain 268 344 4.1E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 123 205 7.6E-18 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APT56_13675 963ceb4421cc21a5b82787b2494b5b99 725 Gene3D G3DSA:2.60.40.1180 621 725 2.9E-35 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APT56_26100 bcdea573a69e7f9085fc75fbe0cb9399 329 Gene3D G3DSA:3.40.190.10 129 252 7.4E-120 T 11-10-2018 APT56_26100 bcdea573a69e7f9085fc75fbe0cb9399 329 PIRSF PIRSF017082 1 328 1.9E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_26100 bcdea573a69e7f9085fc75fbe0cb9399 329 SUPERFAMILY SSF53850 114 287 3.26E-13 T 11-10-2018 APT56_26100 bcdea573a69e7f9085fc75fbe0cb9399 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 324 9.7E-99 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_26100 bcdea573a69e7f9085fc75fbe0cb9399 329 Gene3D G3DSA:3.40.190.150 32 319 7.4E-120 T 11-10-2018 APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 Gene3D G3DSA:1.10.10.10 1 67 1.2E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 7.7E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 7.7E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 1.9E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 SUPERFAMILY SSF46785 3 70 1.95E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 Pfam PF07729 FCD domain 78 205 2.6E-19 T 11-10-2018 IPR011711 GntR, C-terminal APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 SMART SM00345 8 66 2.7E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 Gene3D G3DSA:1.20.120.530 77 212 9.6E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 SMART SM00895 76 207 1.4E-20 T 11-10-2018 IPR011711 GntR, C-terminal APT56_26000 89cd3ceda4c77f6d987742a8c906f1d9 225 SUPERFAMILY SSF48008 73 208 1.18E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 Gene3D G3DSA:3.30.470.20 363 462 7.2E-12 T 11-10-2018 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 Gene3D G3DSA:3.90.190.20 712 854 2.2E-19 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 2 852 0.0 T 11-10-2018 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 473 496 - T 11-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 Pfam PF02875 Mur ligase family, glutamate ligase domain 711 785 4.6E-12 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 SMART SM01209 203 336 0.0047 T 11-10-2018 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 Gene3D G3DSA:3.30.1490.20 204 286 3.0E-19 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 Gene3D G3DSA:3.40.1190.10 468 705 5.2E-37 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 Pfam PF08245 Mur ligase middle domain 475 686 1.7E-20 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 204 287 9.8E-7 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 SUPERFAMILY SSF53623 433 724 1.44E-41 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 SUPERFAMILY SSF56059 204 459 8.92E-37 T 11-10-2018 APT56_07400 a6a31e01ec6478e629753adbc83395a9 856 SUPERFAMILY SSF53244 711 838 2.44E-24 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_03230 1004759c4730374793b337caefa51548 244 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 22 243 3.5E-86 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_03230 1004759c4730374793b337caefa51548 244 Gene3D G3DSA:1.10.3810.10 65 243 3.3E-54 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_03230 1004759c4730374793b337caefa51548 244 SUPERFAMILY SSF53955 68 240 4.78E-57 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_03230 1004759c4730374793b337caefa51548 244 Pfam PF00912 Transglycosylase 70 238 1.2E-52 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_03230 1004759c4730374793b337caefa51548 244 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 16 244 39.142 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_12345 03d536ce4c8148afebc3de2364537076 821 Pfam PF07660 Secretin and TonB N terminus short domain 80 128 6.9E-9 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_12345 03d536ce4c8148afebc3de2364537076 821 SMART SM00965 79 129 1.5E-12 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_12345 03d536ce4c8148afebc3de2364537076 821 SUPERFAMILY SSF56935 130 821 6.23E-146 T 11-10-2018 APT56_12345 03d536ce4c8148afebc3de2364537076 821 Gene3D G3DSA:2.170.130.10 149 284 2.2E-41 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_12345 03d536ce4c8148afebc3de2364537076 821 Pfam PF00593 TonB dependent receptor 350 820 9.6E-65 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_12345 03d536ce4c8148afebc3de2364537076 821 Pfam PF07715 TonB-dependent Receptor Plug Domain 169 273 2.4E-23 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_12345 03d536ce4c8148afebc3de2364537076 821 Gene3D G3DSA:2.40.170.20 285 821 1.4E-146 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_12345 03d536ce4c8148afebc3de2364537076 821 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 170 819 3.7E-135 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_12345 03d536ce4c8148afebc3de2364537076 821 Gene3D G3DSA:3.55.50.30 49 148 1.1E-28 T 11-10-2018 APT56_11295 5d77878ca00b7f08586ab725c4f5eb64 258 SUPERFAMILY SSF46785 3 69 5.99E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11295 5d77878ca00b7f08586ab725c4f5eb64 258 Gene3D G3DSA:1.10.10.10 1 57 3.8E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11295 5d77878ca00b7f08586ab725c4f5eb64 258 Pfam PF09339 IclR helix-turn-helix domain 3 47 2.6E-10 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_11295 5d77878ca00b7f08586ab725c4f5eb64 258 Gene3D G3DSA:3.30.450.40 63 243 9.3E-34 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_11295 5d77878ca00b7f08586ab725c4f5eb64 258 SMART SM00346 1 85 1.2E-4 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_11295 5d77878ca00b7f08586ab725c4f5eb64 258 SUPERFAMILY SSF55781 61 236 1.26E-36 T 11-10-2018 APT56_11295 5d77878ca00b7f08586ab725c4f5eb64 258 Pfam PF01614 Bacterial transcriptional regulator 121 235 1.9E-12 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_07820 f2484425f1717c1ed1764e37c43da545 209 SUPERFAMILY SSF102198 2 206 6.93E-57 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_07820 f2484425f1717c1ed1764e37c43da545 209 Pfam PF04199 Putative cyclase 6 151 3.7E-18 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_07820 f2484425f1717c1ed1764e37c43da545 209 TIGRFAM TIGR03035 trp_arylform: arylformamidase 3 208 2.2E-99 T 11-10-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_07820 f2484425f1717c1ed1764e37c43da545 209 Hamap MF_01969 Kynurenine formamidase [kynB]. 3 208 44.035 T 11-10-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_07820 f2484425f1717c1ed1764e37c43da545 209 Gene3D G3DSA:3.50.30.50 1 209 2.3E-66 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_04715 b05bf6898186a69d2b824f3d4668f304 507 PIRSF PIRSF001394 1 507 1.3E-210 T 11-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 APT56_04715 b05bf6898186a69d2b824f3d4668f304 507 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 327 488 2.7E-46 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 APT56_04715 b05bf6898186a69d2b824f3d4668f304 507 Pfam PF05683 Fumarase C-terminus 289 490 2.2E-81 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 APT56_04715 b05bf6898186a69d2b824f3d4668f304 507 Gene3D G3DSA:3.20.130.10 305 489 1.8E-58 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 APT56_04715 b05bf6898186a69d2b824f3d4668f304 507 Pfam PF05681 Fumarate hydratase (Fumerase) 12 285 5.9E-99 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 APT56_04715 b05bf6898186a69d2b824f3d4668f304 507 SUPERFAMILY SSF117457 320 488 3.66E-62 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 APT56_04715 b05bf6898186a69d2b824f3d4668f304 507 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 14 285 4.7E-63 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 APT56_14195 965a9e68066c6d3bfb1602edf1c412cf 110 Gene3D G3DSA:3.40.30.10 2 104 3.6E-42 T 11-10-2018 APT56_14195 965a9e68066c6d3bfb1602edf1c412cf 110 Pfam PF10262 Rdx family 13 86 1.9E-34 T 11-10-2018 IPR011893 Selenoprotein, Rdx-type APT56_14195 965a9e68066c6d3bfb1602edf1c412cf 110 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 14 85 1.5E-20 T 11-10-2018 IPR011893 Selenoprotein, Rdx-type APT56_14195 965a9e68066c6d3bfb1602edf1c412cf 110 SUPERFAMILY SSF52833 11 95 5.81E-29 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_08895 12eaab7aae4ec050749859f081096acf 239 SMART SM00895 90 213 2.6E-15 T 11-10-2018 IPR011711 GntR, C-terminal APT56_08895 12eaab7aae4ec050749859f081096acf 239 Pfam PF07729 FCD domain 90 212 5.8E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_08895 12eaab7aae4ec050749859f081096acf 239 SUPERFAMILY SSF46785 14 106 2.56E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08895 12eaab7aae4ec050749859f081096acf 239 SMART SM00345 22 80 1.1E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_08895 12eaab7aae4ec050749859f081096acf 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 80 3.6E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_08895 12eaab7aae4ec050749859f081096acf 239 Gene3D G3DSA:1.20.120.530 83 221 4.0E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_08895 12eaab7aae4ec050749859f081096acf 239 Gene3D G3DSA:1.10.10.10 2 82 9.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08895 12eaab7aae4ec050749859f081096acf 239 SUPERFAMILY SSF48008 86 217 2.07E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_15330 0a439002cb4ff683b3c7efd435123c77 227 Pfam PF04367 Protein of unknown function (DUF502) 56 160 7.9E-24 T 11-10-2018 IPR007462 Protein of unknown function DUF502 APT56_22280 7b006495d2218e75f99b556473f47636 213 Pfam PF01144 Coenzyme A transferase 8 201 2.1E-38 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_22280 7b006495d2218e75f99b556473f47636 213 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 6 210 5.0E-88 T 11-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 APT56_22280 7b006495d2218e75f99b556473f47636 213 SMART SM00882 8 205 5.6E-68 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_22280 7b006495d2218e75f99b556473f47636 213 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 46 54 - T 11-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 APT56_22280 7b006495d2218e75f99b556473f47636 213 Gene3D G3DSA:3.40.1080.10 2 212 1.0E-84 T 11-10-2018 APT56_22280 7b006495d2218e75f99b556473f47636 213 SUPERFAMILY SSF100950 6 211 8.84E-63 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_20045 8367b0d5289ca20f2fca067f22c029c6 563 ProSitePatterns PS00455 Putative AMP-binding domain signature. 210 221 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_20045 8367b0d5289ca20f2fca067f22c029c6 563 Gene3D G3DSA:3.40.50.12780 13 456 7.3E-119 T 11-10-2018 APT56_20045 8367b0d5289ca20f2fca067f22c029c6 563 SUPERFAMILY SSF56801 21 556 1.83E-149 T 11-10-2018 APT56_20045 8367b0d5289ca20f2fca067f22c029c6 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 469 543 4.9E-20 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_20045 8367b0d5289ca20f2fca067f22c029c6 563 Gene3D G3DSA:3.30.300.310 457 556 5.3E-30 T 11-10-2018 APT56_20045 8367b0d5289ca20f2fca067f22c029c6 563 Pfam PF00501 AMP-binding enzyme 31 460 1.6E-106 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_05415 4d5f72f4f9506147028779f4101dbd2b 453 SUPERFAMILY SSF52540 66 352 4.84E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05415 4d5f72f4f9506147028779f4101dbd2b 453 Pfam PF00270 DEAD/DEAH box helicase 14 188 4.0E-51 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_05415 4d5f72f4f9506147028779f4101dbd2b 453 Gene3D G3DSA:3.40.50.300 1 203 8.5E-77 T 11-10-2018 APT56_05415 4d5f72f4f9506147028779f4101dbd2b 453 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 145 153 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site APT56_05415 4d5f72f4f9506147028779f4101dbd2b 453 Gene3D G3DSA:3.40.50.300 205 374 2.2E-50 T 11-10-2018 APT56_05415 4d5f72f4f9506147028779f4101dbd2b 453 Pfam PF00271 Helicase conserved C-terminal domain 225 331 3.4E-28 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_05415 4d5f72f4f9506147028779f4101dbd2b 453 SMART SM00487 9 214 2.8E-62 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_05415 4d5f72f4f9506147028779f4101dbd2b 453 SMART SM00490 250 331 7.8E-34 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_02420 79ad396e784403e86c57bdf9603a79c1 253 SMART SM00345 30 88 1.3E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02420 79ad396e784403e86c57bdf9603a79c1 253 SUPERFAMILY SSF46785 23 97 1.01E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02420 79ad396e784403e86c57bdf9603a79c1 253 SUPERFAMILY SSF48008 93 240 2.62E-16 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_02420 79ad396e784403e86c57bdf9603a79c1 253 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 88 3.8E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02420 79ad396e784403e86c57bdf9603a79c1 253 Pfam PF07729 FCD domain 100 233 4.6E-19 T 11-10-2018 IPR011711 GntR, C-terminal APT56_02420 79ad396e784403e86c57bdf9603a79c1 253 SMART SM00895 98 234 1.5E-7 T 11-10-2018 IPR011711 GntR, C-terminal APT56_02420 79ad396e784403e86c57bdf9603a79c1 253 Gene3D G3DSA:1.20.120.530 92 244 9.5E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_02420 79ad396e784403e86c57bdf9603a79c1 253 Gene3D G3DSA:1.10.10.10 22 89 2.1E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14035 287d354cd887e10e6e2fb1a332e39f48 524 PIRSF PIRSF002741 1 505 1.2E-68 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_14035 287d354cd887e10e6e2fb1a332e39f48 524 Gene3D G3DSA:3.40.190.10 16 284 2.1E-63 T 11-10-2018 APT56_14035 287d354cd887e10e6e2fb1a332e39f48 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 443 7.5E-74 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_14035 287d354cd887e10e6e2fb1a332e39f48 524 Gene3D G3DSA:3.10.105.10 285 494 6.3E-29 T 11-10-2018 APT56_14035 287d354cd887e10e6e2fb1a332e39f48 524 SUPERFAMILY SSF53850 26 501 8.19E-103 T 11-10-2018 APT56_08105 7621cc593f886fbf993d8b35e5853c0b 460 Pfam PF00772 DnaB-like helicase N terminal domain 15 116 4.3E-32 T 11-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 APT56_08105 7621cc593f886fbf993d8b35e5853c0b 460 SUPERFAMILY SSF48024 13 124 2.09E-35 T 11-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 APT56_08105 7621cc593f886fbf993d8b35e5853c0b 460 SMART SM00382 212 410 7.8E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08105 7621cc593f886fbf993d8b35e5853c0b 460 Pfam PF03796 DnaB-like helicase C terminal domain 195 450 3.2E-113 T 11-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 APT56_08105 7621cc593f886fbf993d8b35e5853c0b 460 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 15 451 1.6E-174 T 11-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 APT56_08105 7621cc593f886fbf993d8b35e5853c0b 460 SUPERFAMILY SSF52540 193 444 2.25E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08105 7621cc593f886fbf993d8b35e5853c0b 460 Gene3D G3DSA:1.10.860.10 7 173 5.7E-51 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal APT56_08105 7621cc593f886fbf993d8b35e5853c0b 460 Gene3D G3DSA:3.40.50.300 174 453 1.5E-101 T 11-10-2018 APT56_14980 13b423fb600d978bf307a5a3ec7129bb 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 422 3.3E-78 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_14980 13b423fb600d978bf307a5a3ec7129bb 433 PIRSF PIRSF006066 5 433 2.7E-87 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_14980 13b423fb600d978bf307a5a3ec7129bb 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 428 4.7E-124 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 Gene3D G3DSA:3.40.50.720 1 236 3.1E-69 T 11-10-2018 APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 232 1.6E-51 T 11-10-2018 APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 171 0.0083 T 11-10-2018 APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 121 129 3.5E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 68 79 3.5E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 3.5E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 SUPERFAMILY SSF51735 2 235 6.28E-69 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 131 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 217 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18405 7832e12f68aa9960aaabe92b2dbf1f1a 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.8E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17545 b05dbc4cfd32e4d61fac5142d4793638 426 Pfam PF02687 FtsX-like permease family 312 419 3.2E-13 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APT56_17545 b05dbc4cfd32e4d61fac5142d4793638 426 Pfam PF12704 MacB-like periplasmic core domain 38 255 9.1E-19 T 11-10-2018 IPR025857 MacB-like periplasmic core domain APT56_17545 b05dbc4cfd32e4d61fac5142d4793638 426 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 6 425 4.5E-139 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 APT56_23635 4fc58d82021233e648e527df5f62bd42 347 Gene3D G3DSA:3.40.800.20 2 347 2.1E-115 T 11-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_23635 4fc58d82021233e648e527df5f62bd42 347 Pfam PF00850 Histone deacetylase domain 28 343 8.9E-65 T 11-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_23635 4fc58d82021233e648e527df5f62bd42 347 PRINTS PR01270 Histone deacetylase superfamily signature 161 184 1.4E-13 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_23635 4fc58d82021233e648e527df5f62bd42 347 PRINTS PR01270 Histone deacetylase superfamily signature 280 290 1.4E-13 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_23635 4fc58d82021233e648e527df5f62bd42 347 PRINTS PR01270 Histone deacetylase superfamily signature 194 209 1.4E-13 T 11-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 APT56_23635 4fc58d82021233e648e527df5f62bd42 347 SUPERFAMILY SSF52768 2 347 4.12E-87 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily APT56_23230 96c356b18f86f2a9546a3797c958b87d 301 SUPERFAMILY SSF53850 90 299 1.55E-37 T 11-10-2018 APT56_23230 96c356b18f86f2a9546a3797c958b87d 301 SUPERFAMILY SSF46785 9 114 1.73E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23230 96c356b18f86f2a9546a3797c958b87d 301 Gene3D G3DSA:3.40.190.10 165 266 2.0E-49 T 11-10-2018 APT56_23230 96c356b18f86f2a9546a3797c958b87d 301 Gene3D G3DSA:3.40.190.10 93 293 2.0E-49 T 11-10-2018 APT56_23230 96c356b18f86f2a9546a3797c958b87d 301 Gene3D G3DSA:1.10.10.10 5 92 1.2E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23230 96c356b18f86f2a9546a3797c958b87d 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 65 2.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23230 96c356b18f86f2a9546a3797c958b87d 301 Pfam PF03466 LysR substrate binding domain 90 297 2.9E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_05885 adf3071b953a029e1809d25dfee08c68 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 5.0E-134 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT56_05885 adf3071b953a029e1809d25dfee08c68 338 PIRSF PIRSF000116 201 331 9.1E-12 T 11-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT56_05885 adf3071b953a029e1809d25dfee08c68 338 PIRSF PIRSF000116 2 204 3.8E-46 T 11-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT56_05885 adf3071b953a029e1809d25dfee08c68 338 SUPERFAMILY SSF51735 1 182 1.07E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_05885 adf3071b953a029e1809d25dfee08c68 338 Gene3D G3DSA:1.10.3730.40 182 338 3.5E-72 T 11-10-2018 APT56_05885 adf3071b953a029e1809d25dfee08c68 338 SUPERFAMILY SSF48179 183 332 2.89E-68 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_05885 adf3071b953a029e1809d25dfee08c68 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 2.5E-74 T 11-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT56_05885 adf3071b953a029e1809d25dfee08c68 338 Gene3D G3DSA:3.40.50.720 1 181 5.1E-78 T 11-10-2018 APT56_05885 adf3071b953a029e1809d25dfee08c68 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.371 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT56_05885 adf3071b953a029e1809d25dfee08c68 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 6.2E-63 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APT56_02555 052230e357686109f6575e3095d53bd3 244 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 15 219 1.2E-70 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D APT56_02555 052230e357686109f6575e3095d53bd3 244 Gene3D G3DSA:3.30.1360.40 16 97 6.7E-19 T 11-10-2018 APT56_02555 052230e357686109f6575e3095d53bd3 244 Gene3D G3DSA:2.40.100.10 105 243 6.1E-57 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_02555 052230e357686109f6575e3095d53bd3 244 SUPERFAMILY SSF160467 16 111 3.14E-16 T 11-10-2018 APT56_02555 052230e357686109f6575e3095d53bd3 244 SMART SM00796 15 220 8.4E-92 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D APT56_02555 052230e357686109f6575e3095d53bd3 244 SUPERFAMILY SSF50891 106 236 7.21E-47 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_02555 052230e357686109f6575e3095d53bd3 244 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 21 229 4.1E-56 T 11-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 APT56_14005 2aaf10205ba251ef9480c779bcd7af48 283 SUPERFAMILY SSF56529 60 277 4.58E-79 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_14005 2aaf10205ba251ef9480c779bcd7af48 283 Pfam PF10370 Domain of unknown function (DUF2437) 1 65 3.2E-5 T 11-10-2018 IPR018833 Domain of unknown function DUF2437 APT56_14005 2aaf10205ba251ef9480c779bcd7af48 283 Gene3D G3DSA:3.90.850.10 66 281 8.2E-80 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_14005 2aaf10205ba251ef9480c779bcd7af48 283 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 71 276 1.8E-67 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_02770 89751473cd43affb759c43fef251a8bc 318 Pfam PF01965 DJ-1/PfpI family 2 174 5.1E-22 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_02770 89751473cd43affb759c43fef251a8bc 318 SUPERFAMILY SSF46689 267 316 1.12E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02770 89751473cd43affb759c43fef251a8bc 318 Pfam PF12833 Helix-turn-helix domain 236 314 2.3E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_02770 89751473cd43affb759c43fef251a8bc 318 SMART SM00342 230 313 1.2E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_02770 89751473cd43affb759c43fef251a8bc 318 SUPERFAMILY SSF46689 215 263 3.76E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02770 89751473cd43affb759c43fef251a8bc 318 Gene3D G3DSA:1.10.10.60 211 316 1.1E-26 T 11-10-2018 APT56_02770 89751473cd43affb759c43fef251a8bc 318 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 267 309 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_02770 89751473cd43affb759c43fef251a8bc 318 SUPERFAMILY SSF52317 1 195 2.62E-48 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_02770 89751473cd43affb759c43fef251a8bc 318 Gene3D G3DSA:3.40.50.880 1 210 3.3E-60 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_17975 d99f9f9db6ab1b74b6534ba9cfa3e875 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 387 404 3.0E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_17975 d99f9f9db6ab1b74b6534ba9cfa3e875 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 283 295 3.0E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_17975 d99f9f9db6ab1b74b6534ba9cfa3e875 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 214 224 3.0E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_17975 d99f9f9db6ab1b74b6534ba9cfa3e875 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 185 199 3.0E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_17975 d99f9f9db6ab1b74b6534ba9cfa3e875 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 333 349 3.0E-27 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APT56_17975 d99f9f9db6ab1b74b6534ba9cfa3e875 454 Gene3D G3DSA:3.40.50.150 104 404 1.2E-78 T 11-10-2018 APT56_17975 d99f9f9db6ab1b74b6534ba9cfa3e875 454 SUPERFAMILY SSF53335 100 404 1.53E-65 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_17975 d99f9f9db6ab1b74b6534ba9cfa3e875 454 Pfam PF01189 16S rRNA methyltransferase RsmB/F 203 402 1.0E-45 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 APT56_20625 5349f824dcd738f6fb29a2b23772e0c5 361 Gene3D G3DSA:3.40.190.10 141 323 2.5E-61 T 11-10-2018 APT56_20625 5349f824dcd738f6fb29a2b23772e0c5 361 SUPERFAMILY SSF53850 35 352 5.43E-48 T 11-10-2018 APT56_20625 5349f824dcd738f6fb29a2b23772e0c5 361 Pfam PF13343 Bacterial extracellular solute-binding protein 88 324 9.6E-26 T 11-10-2018 APT56_20625 5349f824dcd738f6fb29a2b23772e0c5 361 Gene3D G3DSA:3.40.190.10 46 321 2.5E-61 T 11-10-2018 APT56_25855 efc7fb3d7190e3f8ec51853c6c12e877 239 Pfam PF00005 ABC transporter 23 167 1.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_25855 efc7fb3d7190e3f8ec51853c6c12e877 239 Gene3D G3DSA:3.40.50.300 3 239 2.9E-60 T 11-10-2018 APT56_25855 efc7fb3d7190e3f8ec51853c6c12e877 239 SUPERFAMILY SSF52540 6 233 1.2E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25855 efc7fb3d7190e3f8ec51853c6c12e877 239 SMART SM00382 32 216 2.3E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_25855 efc7fb3d7190e3f8ec51853c6c12e877 239 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_23530 100df2c682a93eebafbc95881ee62781 802 SUPERFAMILY SSF56935 152 802 1.25E-115 T 11-10-2018 APT56_23530 100df2c682a93eebafbc95881ee62781 802 Pfam PF07715 TonB-dependent Receptor Plug Domain 160 259 4.3E-11 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_23530 100df2c682a93eebafbc95881ee62781 802 Gene3D G3DSA:3.55.50.30 36 137 4.2E-19 T 11-10-2018 APT56_23530 100df2c682a93eebafbc95881ee62781 802 Gene3D G3DSA:2.40.170.20 271 802 2.7E-165 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_23530 100df2c682a93eebafbc95881ee62781 802 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 162 802 3.4E-104 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_23530 100df2c682a93eebafbc95881ee62781 802 SMART SM00965 68 118 4.7E-6 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_23530 100df2c682a93eebafbc95881ee62781 802 Pfam PF00593 TonB dependent receptor 358 800 5.5E-46 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_23530 100df2c682a93eebafbc95881ee62781 802 Gene3D G3DSA:2.170.130.10 138 268 4.1E-38 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_23530 100df2c682a93eebafbc95881ee62781 802 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 785 802 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 400 1055 45.325 T 11-10-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 Pfam PF00128 Alpha amylase, catalytic domain 618 730 6.4E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 SMART SM00642 604 953 5.6E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 SUPERFAMILY SSF51445 589 960 8.22E-88 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 SUPERFAMILY SSF51445 145 231 8.27E-6 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 Pfam PF11896 Domain of unknown function (DUF3416) 403 594 8.1E-53 T 11-10-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 Gene3D G3DSA:1.20.58.280 490 575 3.1E-50 T 11-10-2018 APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 Gene3D G3DSA:2.60.40.10 403 594 3.1E-50 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 Gene3D G3DSA:3.20.20.80 73 284 1.3E-15 T 11-10-2018 APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 Gene3D G3DSA:3.20.20.80 595 963 8.0E-163 T 11-10-2018 APT56_13685 9d567f4f44aaecaea3a63da9e1fa2ff6 1057 Gene3D G3DSA:2.60.40.1180 964 1057 1.7E-10 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 Gene3D G3DSA:2.160.10.10 88 258 7.8E-57 T 11-10-2018 APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 2 273 56.068 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 Gene3D G3DSA:1.10.166.10 3 71 1.2E-28 T 11-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 5 272 5.7E-140 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 SUPERFAMILY SSF51161 3 257 3.05E-76 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 116 167 6.1E-4 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 135 163 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 176 210 1.1E-13 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_17910 e60405dc1000e296d851adc726ccdb7a 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 4 70 2.3E-26 T 11-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 APT56_26270 530e30ae76dbe58a5ad419e088892782 287 Gene3D G3DSA:3.40.710.10 13 282 1.2E-59 T 11-10-2018 APT56_26270 530e30ae76dbe58a5ad419e088892782 287 Pfam PF13354 Beta-lactamase enzyme family 40 246 3.2E-52 T 11-10-2018 APT56_26270 530e30ae76dbe58a5ad419e088892782 287 SUPERFAMILY SSF56601 18 253 2.82E-42 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_02230 d470145affbdc4f56d8dc71c21795d91 310 Gene3D G3DSA:3.40.50.880 1 196 1.2E-58 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_02230 d470145affbdc4f56d8dc71c21795d91 310 SUPERFAMILY SSF46689 258 306 8.06E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02230 d470145affbdc4f56d8dc71c21795d91 310 SUPERFAMILY SSF46689 205 252 4.0E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02230 d470145affbdc4f56d8dc71c21795d91 310 Pfam PF01965 DJ-1/PfpI family 4 167 1.8E-16 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_02230 d470145affbdc4f56d8dc71c21795d91 310 Pfam PF12833 Helix-turn-helix domain 228 306 3.6E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_02230 d470145affbdc4f56d8dc71c21795d91 310 Gene3D G3DSA:1.10.10.60 202 308 4.8E-25 T 11-10-2018 APT56_02230 d470145affbdc4f56d8dc71c21795d91 310 SMART SM00342 222 305 3.7E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_02230 d470145affbdc4f56d8dc71c21795d91 310 SUPERFAMILY SSF52317 1 187 6.34E-45 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_01580 7843d700f9caa112c7270255941673e1 305 SUPERFAMILY SSF46785 8 94 5.44E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01580 7843d700f9caa112c7270255941673e1 305 Gene3D G3DSA:1.10.10.10 8 97 4.1E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01580 7843d700f9caa112c7270255941673e1 305 Pfam PF03466 LysR substrate binding domain 98 297 2.1E-22 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_01580 7843d700f9caa112c7270255941673e1 305 Gene3D G3DSA:3.40.190.290 98 299 1.9E-17 T 11-10-2018 APT56_01580 7843d700f9caa112c7270255941673e1 305 SUPERFAMILY SSF53850 112 297 4.16E-25 T 11-10-2018 APT56_01580 7843d700f9caa112c7270255941673e1 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 2.0E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 SMART SM01360 810 899 8.5E-30 T 11-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 Pfam PF00207 Alpha-2-macroglobulin family 817 899 1.8E-13 T 11-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 144 237 3.8E-20 T 11-10-2018 APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 Pfam PF07678 A-macroglobulin complement component 1071 1148 7.7E-10 T 11-10-2018 IPR011626 Alpha-macroglobulin complement component GO:0005615 APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 Gene3D G3DSA:1.50.10.20 1012 1303 2.5E-32 T 11-10-2018 APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 Pfam PF01835 MG2 domain 244 341 2.4E-17 T 11-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1017 1039 1.9E-5 T 11-10-2018 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 SUPERFAMILY SSF48239 1016 1299 2.24E-42 T 11-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 PIRSF PIRSF038980 1 1521 0.0 T 11-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 SMART SM01359 604 748 1.8E-34 T 11-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 APT56_18195 963d6a01a23da2104ca56ce02dc52900 1527 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 605 748 4.3E-13 T 11-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 SUPERFAMILY SSF52343 262 400 1.96E-36 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 Pfam PF00970 Oxidoreductase FAD-binding domain 158 261 5.2E-6 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 SUPERFAMILY SSF46458 2 143 8.15E-41 T 11-10-2018 IPR009050 Globin-like superfamily APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 SUPERFAMILY SSF63380 151 262 8.85E-29 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 Gene3D G3DSA:2.40.30.10 151 261 2.2E-36 T 11-10-2018 APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 Hamap MF_01252 Flavohemoprotein [hmp]. 1 404 55.45 T 11-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 Gene3D G3DSA:1.10.490.10 1 145 1.1E-56 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 Pfam PF00042 Globin 8 103 3.1E-11 T 11-10-2018 IPR000971 Globin GO:0020037 APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 Gene3D G3DSA:3.40.50.80 264 401 8.5E-34 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_10650 bc44330535fc615896fd0fd927ee8d5e 405 Pfam PF00175 Oxidoreductase NAD-binding domain 272 380 1.2E-15 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 PRINTS PR00126 ATP synthase gamma subunit signature 279 300 1.6E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 PRINTS PR00126 ATP synthase gamma subunit signature 248 267 1.6E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.6E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.6E-33 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 301 34.221 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 SUPERFAMILY SSF52943 3 301 4.05E-88 T 11-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 Pfam PF00231 ATP synthase 4 300 7.8E-89 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 Gene3D G3DSA:3.40.1380.10 61 220 6.7E-99 T 11-10-2018 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 Gene3D G3DSA:1.10.287.80 6 297 6.7E-99 T 11-10-2018 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 287 300 - T 11-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02175 ef13a5f806d4a8e1caa0c6ccdc5f93f3 301 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 301 2.5E-95 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 PIRSF PIRSF000005 4 226 1.4E-60 T 11-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 Gene3D G3DSA:1.10.760.10 134 226 1.8E-24 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 Gene3D G3DSA:1.10.760.10 28 126 5.8E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 159 221 1.2E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 PRINTS PR00605 Class IC cytochrome C signature 49 60 7.8E-5 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 PRINTS PR00605 Class IC cytochrome C signature 200 222 7.8E-5 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 SUPERFAMILY SSF46626 30 126 3.73E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 Pfam PF00034 Cytochrome c 32 127 4.0E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_27625 e05047d60a43ff13ee6c47ba85a45531 226 SUPERFAMILY SSF46626 140 224 3.58E-23 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_08205 736bfb513b697353982fdbf80c3ff731 470 SMART SM00267 297 470 1.7E-55 T 11-10-2018 IPR000160 GGDEF domain APT56_08205 736bfb513b697353982fdbf80c3ff731 470 Gene3D G3DSA:1.10.490.10 22 171 1.3E-44 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 APT56_08205 736bfb513b697353982fdbf80c3ff731 470 Gene3D G3DSA:3.30.70.270 306 470 4.5E-53 T 11-10-2018 APT56_08205 736bfb513b697353982fdbf80c3ff731 470 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 308 468 5.5E-50 T 11-10-2018 IPR000160 GGDEF domain APT56_08205 736bfb513b697353982fdbf80c3ff731 470 SUPERFAMILY SSF55073 314 468 1.02E-45 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_08205 736bfb513b697353982fdbf80c3ff731 470 SUPERFAMILY SSF46458 45 156 4.8E-12 T 11-10-2018 IPR009050 Globin-like superfamily APT56_08205 736bfb513b697353982fdbf80c3ff731 470 Pfam PF00990 Diguanylate cyclase, GGDEF domain 311 466 1.1E-43 T 11-10-2018 IPR000160 GGDEF domain APT56_08205 736bfb513b697353982fdbf80c3ff731 470 Pfam PF11563 Protoglobin 42 175 1.0E-7 T 11-10-2018 APT56_00235 e12e69a5c79217abb1f499343135c720 331 Gene3D G3DSA:3.40.50.300 9 329 9.5E-94 T 11-10-2018 APT56_00235 e12e69a5c79217abb1f499343135c720 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 305 1.2E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_00235 e12e69a5c79217abb1f499343135c720 331 Pfam PF00005 ABC transporter 32 189 6.1E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00235 e12e69a5c79217abb1f499343135c720 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 323 4.3E-27 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_00235 e12e69a5c79217abb1f499343135c720 331 SMART SM00382 40 239 5.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00235 e12e69a5c79217abb1f499343135c720 331 SUPERFAMILY SSF52540 11 260 1.93E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00235 e12e69a5c79217abb1f499343135c720 331 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_18385 156f387b5952799ab889d9e71f37c437 342 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 135 338 2.0E-37 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_18385 156f387b5952799ab889d9e71f37c437 342 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 119 1.7E-15 T 11-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 APT56_18385 156f387b5952799ab889d9e71f37c437 342 SUPERFAMILY SSF55331 2 124 1.83E-29 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_18385 156f387b5952799ab889d9e71f37c437 342 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 134 337 4.1E-74 T 11-10-2018 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 APT56_18385 156f387b5952799ab889d9e71f37c437 342 Gene3D G3DSA:3.30.429.10 1 128 1.1E-40 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_18385 156f387b5952799ab889d9e71f37c437 342 SUPERFAMILY SSF56529 132 339 5.1E-47 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_18385 156f387b5952799ab889d9e71f37c437 342 Gene3D G3DSA:3.90.850.10 133 341 1.7E-46 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 Gene3D G3DSA:3.40.50.970 482 717 1.7E-106 T 11-10-2018 APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 Gene3D G3DSA:3.40.50.970 63 481 4.2E-132 T 11-10-2018 APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 147 302 8.0E-9 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 SUPERFAMILY SSF52922 715 901 5.65E-59 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 SUPERFAMILY SSF52518 483 711 8.05E-97 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 12 901 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 SUPERFAMILY SSF52518 64 477 5.2E-136 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 PIRSF PIRSF000156 4 902 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APT56_11835 a6fd25b80fe25f7684ad8952b298842c 902 Gene3D G3DSA:3.40.50.920 718 902 5.5E-75 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_23140 6587284a9fa1ab9fbbfbfc15f3fbd235 160 SUPERFAMILY SSF89963 89 160 3.79E-27 T 11-10-2018 IPR036183 YajQ-like superfamily APT56_23140 6587284a9fa1ab9fbbfbfc15f3fbd235 160 Pfam PF04461 Protein of unknown function (DUF520) 2 159 2.3E-59 T 11-10-2018 IPR007551 Protein of unknown function DUF520 APT56_23140 6587284a9fa1ab9fbbfbfc15f3fbd235 160 SUPERFAMILY SSF89963 2 83 4.97E-28 T 11-10-2018 IPR036183 YajQ-like superfamily APT56_23140 6587284a9fa1ab9fbbfbfc15f3fbd235 160 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 160 27.729 T 11-10-2018 IPR007551 Protein of unknown function DUF520 APT56_23140 6587284a9fa1ab9fbbfbfc15f3fbd235 160 Gene3D G3DSA:3.30.70.860 95 160 1.2E-28 T 11-10-2018 IPR035571 UPF0234-like, C-terminal APT56_23140 6587284a9fa1ab9fbbfbfc15f3fbd235 160 Gene3D G3DSA:3.30.70.990 9 94 1.4E-27 T 11-10-2018 IPR035570 UPF0234, N-terminal APT56_03035 923f5f972a194fe1afa4556aa7e73a2a 653 SMART SM00331 429 652 7.5E-6 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 APT56_03035 923f5f972a194fe1afa4556aa7e73a2a 653 Pfam PF00672 HAMP domain 327 375 2.3E-14 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_03035 923f5f972a194fe1afa4556aa7e73a2a 653 SMART SM00304 327 379 1.6E-16 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_03035 923f5f972a194fe1afa4556aa7e73a2a 653 Gene3D G3DSA:1.20.1480.50 305 386 7.9E-13 T 11-10-2018 APT56_03035 923f5f972a194fe1afa4556aa7e73a2a 653 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 456 652 1.3E-23 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 APT56_03035 923f5f972a194fe1afa4556aa7e73a2a 653 Gene3D G3DSA:3.60.40.10 394 651 5.4E-51 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 APT56_03035 923f5f972a194fe1afa4556aa7e73a2a 653 SUPERFAMILY SSF158472 327 376 2.62E-11 T 11-10-2018 APT56_02995 95e7d420377bfd6d5adebb7159a4109b 408 SUPERFAMILY SSF56266 16 405 1.7E-134 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_02995 95e7d420377bfd6d5adebb7159a4109b 408 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 25 406 1.0E-173 T 11-10-2018 APT56_02995 95e7d420377bfd6d5adebb7159a4109b 408 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 12 408 1.4E-117 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_02995 95e7d420377bfd6d5adebb7159a4109b 408 Pfam PF01960 ArgJ family 22 408 9.0E-139 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_02995 95e7d420377bfd6d5adebb7159a4109b 408 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 408 155.513 T 11-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_02995 95e7d420377bfd6d5adebb7159a4109b 408 Gene3D G3DSA:3.10.20.340 279 408 1.0E-40 T 11-10-2018 APT56_02995 95e7d420377bfd6d5adebb7159a4109b 408 Gene3D G3DSA:3.60.70.12 10 278 5.8E-88 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_15520 d749ec34ad9c7d1a3cfe1d58cb09eb8f 124 Pfam PF01124 MAPEG family 4 121 3.8E-21 T 11-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein APT56_15520 d749ec34ad9c7d1a3cfe1d58cb09eb8f 124 Gene3D G3DSA:1.20.120.550 2 124 1.6E-16 T 11-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily APT56_15520 d749ec34ad9c7d1a3cfe1d58cb09eb8f 124 SUPERFAMILY SSF161084 3 120 1.83E-22 T 11-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 Gene3D G3DSA:1.20.120.530 99 244 3.3E-29 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 Pfam PF07729 FCD domain 108 233 4.5E-25 T 11-10-2018 IPR011711 GntR, C-terminal APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 9.4E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 9.4E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 SMART SM00895 107 234 4.2E-24 T 11-10-2018 IPR011711 GntR, C-terminal APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 Gene3D G3DSA:1.10.10.10 14 91 7.3E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 83 4.1E-23 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 SUPERFAMILY SSF48008 103 239 2.38E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 SUPERFAMILY SSF46785 16 87 6.95E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25820 5266ae1efde35daa03d9993e4d33bafb 250 SMART SM00345 24 83 1.1E-26 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 ProSitePatterns PS01155 Endonuclease III family signature. 99 128 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 Gene3D G3DSA:1.10.1670.10 6 211 4.3E-86 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 SUPERFAMILY SSF55811 220 341 6.09E-26 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 Pfam PF14815 NUDIX domain 235 341 1.8E-25 T 11-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 Pfam PF00633 Helix-hairpin-helix motif 99 125 2.1E-5 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 SUPERFAMILY SSF48150 3 224 2.2E-70 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 192 208 4.3E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 Gene3D G3DSA:3.90.79.10 232 345 7.0E-18 T 11-10-2018 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 192 208 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 33 163 3.8E-21 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 3 266 4.9E-104 T 11-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 SMART SM00478 36 190 7.9E-44 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_02755 4d1dfc66982c710b5cdd838518c4227c 358 Gene3D G3DSA:1.10.340.30 18 129 4.3E-86 T 11-10-2018 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 Gene3D G3DSA:3.60.21.10 37 403 1.1E-103 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 ProSitePatterns PS00786 5'-nucleotidase signature 2. 137 148 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 SUPERFAMILY SSF55816 439 615 1.57E-36 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 ProSitePatterns PS00785 5'-nucleotidase signature 1. 48 60 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 SUPERFAMILY SSF56300 42 371 5.31E-70 T 11-10-2018 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 Pfam PF00149 Calcineurin-like phosphoesterase 48 281 3.5E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 Gene3D G3DSA:3.90.780.10 427 621 7.7E-43 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 Pfam PF02872 5'-nucleotidase, C-terminal domain 444 590 2.0E-29 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 PRINTS PR01607 Apyrase family signature 482 505 8.6E-35 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 PRINTS PR01607 Apyrase family signature 564 583 8.6E-35 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 PRINTS PR01607 Apyrase family signature 264 287 8.6E-35 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 PRINTS PR01607 Apyrase family signature 312 332 8.6E-35 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 PRINTS PR01607 Apyrase family signature 245 262 8.6E-35 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_01640 ec402944d51e2b82576fcb026566ffe7 641 PRINTS PR01607 Apyrase family signature 46 64 8.6E-35 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APT56_05525 e459cf71fec6f7f2f3570bb0af5c2929 213 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 200 23.522 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 APT56_05525 e459cf71fec6f7f2f3570bb0af5c2929 213 Pfam PF02525 Flavodoxin-like fold 1 198 3.9E-35 T 11-10-2018 IPR003680 Flavodoxin-like fold APT56_05525 e459cf71fec6f7f2f3570bb0af5c2929 213 Gene3D G3DSA:3.40.50.360 1 201 1.2E-41 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_05525 e459cf71fec6f7f2f3570bb0af5c2929 213 SUPERFAMILY SSF52218 1 202 2.44E-39 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_02095 347824f9c894a35840731e8b02df6588 308 SUPERFAMILY SSF46785 5 87 6.68E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02095 347824f9c894a35840731e8b02df6588 308 Gene3D G3DSA:3.40.190.290 95 291 6.9E-18 T 11-10-2018 APT56_02095 347824f9c894a35840731e8b02df6588 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 9.0E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02095 347824f9c894a35840731e8b02df6588 308 Gene3D G3DSA:1.10.10.10 4 91 4.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02095 347824f9c894a35840731e8b02df6588 308 Pfam PF03466 LysR substrate binding domain 92 293 6.1E-29 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_02095 347824f9c894a35840731e8b02df6588 308 SUPERFAMILY SSF53850 94 296 1.96E-31 T 11-10-2018 APT56_09305 e9021dc092e4d4b464c5d2d4a228ade7 156 Gene3D G3DSA:1.10.760.10 75 134 2.4E-5 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_09305 e9021dc092e4d4b464c5d2d4a228ade7 156 SUPERFAMILY SSF46626 32 122 2.18E-11 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_17125 d0a6f8569e9b708784fb11b7d9de78a0 125 Gene3D G3DSA:1.10.238.10 50 112 1.3E-9 T 11-10-2018 APT56_17125 d0a6f8569e9b708784fb11b7d9de78a0 125 ProSitePatterns PS00018 EF-hand calcium-binding domain. 91 103 - T 11-10-2018 IPR018247 EF-Hand 1, calcium-binding site APT56_17125 d0a6f8569e9b708784fb11b7d9de78a0 125 Pfam PF13202 EF hand 89 104 2.7E-5 T 11-10-2018 IPR002048 EF-hand domain GO:0005509 APT56_17125 d0a6f8569e9b708784fb11b7d9de78a0 125 SUPERFAMILY SSF47473 54 112 8.38E-11 T 11-10-2018 IPR011992 EF-hand domain pair APT56_16415 ebdc1b8321519d65f4dd8ebae1a911e3 359 Pfam PF13478 XdhC Rossmann domain 165 307 7.8E-35 T 11-10-2018 IPR027051 XdhC Rossmann domain APT56_16415 ebdc1b8321519d65f4dd8ebae1a911e3 359 Gene3D G3DSA:3.40.50.720 164 313 7.2E-40 T 11-10-2018 APT56_16415 ebdc1b8321519d65f4dd8ebae1a911e3 359 Pfam PF02625 XdhC and CoxI family 15 83 4.8E-23 T 11-10-2018 IPR003777 XdhC- CoxI APT56_04565 4d9f91aad4c71f4c50bcd283a6687de4 214 SUPERFAMILY SSF46689 4 84 1.08E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_04565 4d9f91aad4c71f4c50bcd283a6687de4 214 Gene3D G3DSA:1.10.10.60 1 69 3.8E-29 T 11-10-2018 APT56_04565 4d9f91aad4c71f4c50bcd283a6687de4 214 SUPERFAMILY SSF48498 82 195 1.75E-27 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_04565 4d9f91aad4c71f4c50bcd283a6687de4 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.4E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_04565 4d9f91aad4c71f4c50bcd283a6687de4 214 Gene3D G3DSA:1.10.357.10 71 199 2.7E-32 T 11-10-2018 APT56_04565 4d9f91aad4c71f4c50bcd283a6687de4 214 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_16570 04ad24087ae51e3dc1733a122b964783 296 Pfam PF03466 LysR substrate binding domain 93 294 2.0E-23 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16570 04ad24087ae51e3dc1733a122b964783 296 SUPERFAMILY SSF46785 2 82 4.54E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16570 04ad24087ae51e3dc1733a122b964783 296 Gene3D G3DSA:1.10.10.10 1 84 2.7E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16570 04ad24087ae51e3dc1733a122b964783 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 4.0E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16570 04ad24087ae51e3dc1733a122b964783 296 SUPERFAMILY SSF53850 92 293 1.5E-35 T 11-10-2018 APT56_16570 04ad24087ae51e3dc1733a122b964783 296 Gene3D G3DSA:3.40.190.10 169 265 8.9E-57 T 11-10-2018 APT56_16570 04ad24087ae51e3dc1733a122b964783 296 Gene3D G3DSA:3.40.190.10 93 289 8.9E-57 T 11-10-2018 APT56_02425 36aeea9085420184e72884041ef4a05b 294 Gene3D G3DSA:3.40.50.1820 8 289 9.2E-62 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02425 36aeea9085420184e72884041ef4a05b 294 SUPERFAMILY SSF53474 18 278 2.19E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02425 36aeea9085420184e72884041ef4a05b 294 Pfam PF07859 alpha/beta hydrolase fold 79 171 2.4E-19 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 APT56_04740 57a454ccbb9da3c881e166a9a8730a4d 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 5.8E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04740 57a454ccbb9da3c881e166a9a8730a4d 299 Pfam PF03466 LysR substrate binding domain 89 296 6.0E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_04740 57a454ccbb9da3c881e166a9a8730a4d 299 SUPERFAMILY SSF53850 90 297 8.59E-42 T 11-10-2018 APT56_04740 57a454ccbb9da3c881e166a9a8730a4d 299 Gene3D G3DSA:1.10.10.10 3 92 2.1E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04740 57a454ccbb9da3c881e166a9a8730a4d 299 SUPERFAMILY SSF46785 2 112 1.03E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04740 57a454ccbb9da3c881e166a9a8730a4d 299 Gene3D G3DSA:3.40.190.290 93 298 9.2E-41 T 11-10-2018 APT56_12405 b7ca8e46458edb36445c8b30ffee47bc 391 Gene3D G3DSA:3.90.226.10 3 389 1.1E-123 T 11-10-2018 APT56_12405 b7ca8e46458edb36445c8b30ffee47bc 391 SUPERFAMILY SSF52096 18 357 2.06E-62 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_12405 b7ca8e46458edb36445c8b30ffee47bc 391 Pfam PF16113 Enoyl-CoA hydratase/isomerase 19 371 7.2E-115 T 11-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 Gene3D G3DSA:3.40.50.11540 82 259 4.2E-74 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 SMART SM00928 358 403 5.0E-25 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 SUPERFAMILY SSF140490 355 452 3.79E-38 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 SUPERFAMILY SSF142984 270 353 1.7E-26 T 11-10-2018 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 Pfam PF10531 SLBB domain 272 320 9.8E-13 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 Gene3D G3DSA:3.10.20.600 261 355 4.8E-35 T 11-10-2018 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 371 382 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 362 443 2.7E-30 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 Gene3D G3DSA:1.20.1440.230 356 452 2.0E-33 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 SUPERFAMILY SSF142019 45 269 1.09E-83 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 77 248 2.7E-46 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06415 bb20d566d03784dc6b00e63f504d57f5 455 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 44 444 3.7E-193 T 11-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_12295 3a2e05ea739947c68fde7aae5f221ac6 151 Pfam PF07977 FabA-like domain 12 141 1.1E-41 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_12295 3a2e05ea739947c68fde7aae5f221ac6 151 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 3 146 8.4E-59 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_12295 3a2e05ea739947c68fde7aae5f221ac6 151 SUPERFAMILY SSF54637 5 147 2.22E-49 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_12295 3a2e05ea739947c68fde7aae5f221ac6 151 Gene3D G3DSA:3.10.129.10 1 149 2.8E-59 T 11-10-2018 APT56_12295 3a2e05ea739947c68fde7aae5f221ac6 151 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 3 148 34.306 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_02685 9394d98d300e617d4b4433949972944f 310 Pfam PF01497 Periplasmic binding protein 61 284 2.1E-18 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APT56_02685 9394d98d300e617d4b4433949972944f 310 SUPERFAMILY SSF53807 38 302 2.55E-56 T 11-10-2018 APT56_02685 9394d98d300e617d4b4433949972944f 310 Gene3D G3DSA:3.40.50.1980 177 307 3.3E-28 T 11-10-2018 APT56_02685 9394d98d300e617d4b4433949972944f 310 Gene3D G3DSA:3.40.50.1980 57 175 2.5E-27 T 11-10-2018 APT56_27680 30ceb387c49b4e74599c0bd4e382695e 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 11-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27680 30ceb387c49b4e74599c0bd4e382695e 121 PIRSF PIRSF002134 1 121 6.4E-39 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27680 30ceb387c49b4e74599c0bd4e382695e 121 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.6E-30 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27680 30ceb387c49b4e74599c0bd4e382695e 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.339 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27680 30ceb387c49b4e74599c0bd4e382695e 121 SUPERFAMILY SSF46946 2 114 2.94E-42 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 APT56_27680 30ceb387c49b4e74599c0bd4e382695e 121 Gene3D G3DSA:4.10.910.10 72 121 9.9E-24 T 11-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27680 30ceb387c49b4e74599c0bd4e382695e 121 Gene3D G3DSA:1.10.8.50 1 71 1.2E-25 T 11-10-2018 APT56_27680 30ceb387c49b4e74599c0bd4e382695e 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.0E-50 T 11-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_00950 d9e7677a422546eed4f23a0ac612f182 442 Pfam PF01425 Amidase 27 415 7.0E-86 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_00950 d9e7677a422546eed4f23a0ac612f182 442 Gene3D G3DSA:3.90.1300.10 8 428 1.4E-131 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_00950 d9e7677a422546eed4f23a0ac612f182 442 SUPERFAMILY SSF75304 5 423 3.4E-118 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_23890 f3dc224e031080d4d38275f121cdbf3b 255 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 25 203 4.6E-44 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_23890 f3dc224e031080d4d38275f121cdbf3b 255 SMART SM01007 24 203 1.6E-58 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_23890 f3dc224e031080d4d38275f121cdbf3b 255 Gene3D G3DSA:3.40.225.10 9 255 7.0E-75 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_23890 f3dc224e031080d4d38275f121cdbf3b 255 SUPERFAMILY SSF53639 18 223 3.73E-60 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_16105 69c8ea27b22274e371d390085b240ec7 896 Pfam PF05954 Phage late control gene D protein (GPD) 43 354 4.9E-89 T 11-10-2018 APT56_16105 69c8ea27b22274e371d390085b240ec7 896 Gene3D G3DSA:2.30.110.50 27 354 1.0E-96 T 11-10-2018 APT56_16105 69c8ea27b22274e371d390085b240ec7 896 SUPERFAMILY SSF69255 405 507 2.54E-25 T 11-10-2018 APT56_16105 69c8ea27b22274e371d390085b240ec7 896 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 563 667 1.1E-28 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain APT56_16105 69c8ea27b22274e371d390085b240ec7 896 SUPERFAMILY SSF69279 228 394 1.02E-23 T 11-10-2018 APT56_16105 69c8ea27b22274e371d390085b240ec7 896 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 705 863 2.8E-35 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal APT56_16105 69c8ea27b22274e371d390085b240ec7 896 Gene3D G3DSA:2.40.50.230 398 511 5.8E-38 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily APT56_16105 69c8ea27b22274e371d390085b240ec7 896 Gene3D G3DSA:3.55.50.10 114 212 1.0E-96 T 11-10-2018 APT56_16105 69c8ea27b22274e371d390085b240ec7 896 Gene3D G3DSA:3.30.1920.30 245 310 1.0E-96 T 11-10-2018 APT56_16105 69c8ea27b22274e371d390085b240ec7 896 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 24 512 1.3E-109 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset APT56_16105 69c8ea27b22274e371d390085b240ec7 896 SUPERFAMILY SSF69279 25 208 3.8E-51 T 11-10-2018 APT56_16105 69c8ea27b22274e371d390085b240ec7 896 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 37 511 6.6E-89 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein APT56_12465 eeb77a97344ea2232e72f48d172dbc48 222 Gene3D G3DSA:1.10.3720.10 1 219 6.0E-60 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12465 eeb77a97344ea2232e72f48d172dbc48 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 3.0E-29 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_12465 eeb77a97344ea2232e72f48d172dbc48 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 216 8.3E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12465 eeb77a97344ea2232e72f48d172dbc48 222 SUPERFAMILY SSF161098 15 201 2.49E-47 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16985 f89ed31de7498725af62043d7ba27396 293 Gene3D G3DSA:3.40.190.10 164 262 6.6E-36 T 11-10-2018 APT56_16985 f89ed31de7498725af62043d7ba27396 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16985 f89ed31de7498725af62043d7ba27396 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16985 f89ed31de7498725af62043d7ba27396 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16985 f89ed31de7498725af62043d7ba27396 293 SUPERFAMILY SSF46785 1 108 1.23E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16985 f89ed31de7498725af62043d7ba27396 293 SUPERFAMILY SSF53850 87 288 1.58E-37 T 11-10-2018 APT56_16985 f89ed31de7498725af62043d7ba27396 293 Gene3D G3DSA:1.10.10.10 1 88 1.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16985 f89ed31de7498725af62043d7ba27396 293 Pfam PF03466 LysR substrate binding domain 86 283 4.2E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16985 f89ed31de7498725af62043d7ba27396 293 Gene3D G3DSA:3.40.190.10 89 273 6.6E-36 T 11-10-2018 APT56_16985 f89ed31de7498725af62043d7ba27396 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 5.1E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07880 d87eafebbe3b8532605ff52cea796ff3 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 56 4.4E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07880 d87eafebbe3b8532605ff52cea796ff3 293 Gene3D G3DSA:3.40.190.10 86 283 2.8E-57 T 11-10-2018 APT56_07880 d87eafebbe3b8532605ff52cea796ff3 293 Gene3D G3DSA:3.40.190.10 157 256 2.8E-57 T 11-10-2018 APT56_07880 d87eafebbe3b8532605ff52cea796ff3 293 Gene3D G3DSA:1.10.10.10 1 85 6.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07880 d87eafebbe3b8532605ff52cea796ff3 293 Pfam PF03466 LysR substrate binding domain 83 285 6.1E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_07880 d87eafebbe3b8532605ff52cea796ff3 293 SUPERFAMILY SSF53850 83 290 5.07E-43 T 11-10-2018 APT56_07880 d87eafebbe3b8532605ff52cea796ff3 293 SUPERFAMILY SSF46785 2 105 6.85E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10845 1341391ce5a03d14d44b592c86444b23 241 Gene3D G3DSA:1.10.10.60 14 66 3.1E-16 T 11-10-2018 APT56_10845 1341391ce5a03d14d44b592c86444b23 241 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 68 1.6E-14 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_10845 1341391ce5a03d14d44b592c86444b23 241 SUPERFAMILY SSF46689 10 94 8.21E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_10845 1341391ce5a03d14d44b592c86444b23 241 SUPERFAMILY SSF48498 93 207 6.12E-21 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_10845 1341391ce5a03d14d44b592c86444b23 241 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 5.0E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_10845 1341391ce5a03d14d44b592c86444b23 241 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 5.0E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_10845 1341391ce5a03d14d44b592c86444b23 241 Pfam PF08359 YsiA-like protein, C-terminal region 78 202 8.1E-9 T 11-10-2018 IPR013570 Transcription regulator YsiA, C-terminal APT56_10845 1341391ce5a03d14d44b592c86444b23 241 ProSitePatterns PS01081 TetR-type HTH domain signature. 37 67 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_10845 1341391ce5a03d14d44b592c86444b23 241 Gene3D G3DSA:1.10.357.10 67 210 7.1E-26 T 11-10-2018 APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 SUPERFAMILY SSF82866 73 294 1.44E-39 T 11-10-2018 APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 283 1.8E-75 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 95 280 2.0E-49 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 Gene3D G3DSA:1.20.1640.10 95 302 1.4E-12 T 11-10-2018 APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 PRINTS PR01755 Bacterial translocase SecF protein signature 199 217 5.1E-27 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 PRINTS PR01755 Bacterial translocase SecF protein signature 37 52 5.1E-27 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 PRINTS PR01755 Bacterial translocase SecF protein signature 151 165 5.1E-27 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 PRINTS PR01755 Bacterial translocase SecF protein signature 231 246 5.1E-27 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 Pfam PF07549 SecD/SecF GG Motif 32 59 2.2E-8 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 294 29.221 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 APT56_22745 20c7ecbc8f6e1e1df9ce74930832a387 311 Pfam PF02355 Protein export membrane protein 107 291 1.7E-63 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial APT56_13740 b666066dd5ad5de5d47c23dc2fd52dc8 359 SUPERFAMILY SSF82689 247 347 8.11E-13 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APT56_13740 b666066dd5ad5de5d47c23dc2fd52dc8 359 SUPERFAMILY SSF50182 181 245 3.27E-11 T 11-10-2018 IPR010920 LSM domain superfamily APT56_13740 b666066dd5ad5de5d47c23dc2fd52dc8 359 SUPERFAMILY SSF82861 97 179 1.44E-11 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APT56_13740 b666066dd5ad5de5d47c23dc2fd52dc8 359 Pfam PF00924 Mechanosensitive ion channel 139 337 1.8E-47 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT56_13740 b666066dd5ad5de5d47c23dc2fd52dc8 359 Gene3D G3DSA:2.30.30.60 196 245 3.0E-9 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily APT56_13740 b666066dd5ad5de5d47c23dc2fd52dc8 359 Gene3D G3DSA:3.30.70.100 246 342 9.7E-12 T 11-10-2018 APT56_19665 b2ab33a961de8439bf6a399bd6e62c2f 234 Gene3D G3DSA:3.40.50.300 1 234 3.8E-67 T 11-10-2018 APT56_19665 b2ab33a961de8439bf6a399bd6e62c2f 234 SUPERFAMILY SSF52540 2 232 6.3E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19665 b2ab33a961de8439bf6a399bd6e62c2f 234 SMART SM00382 26 213 7.1E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19665 b2ab33a961de8439bf6a399bd6e62c2f 234 Pfam PF00005 ABC transporter 17 162 5.7E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19665 b2ab33a961de8439bf6a399bd6e62c2f 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_22200 c7b90a673b3c34694075270bdf49528d 519 Gene3D G3DSA:2.30.38.10 312 418 5.0E-38 T 11-10-2018 APT56_22200 c7b90a673b3c34694075270bdf49528d 519 Gene3D G3DSA:1.10.10.2900 241 311 3.7E-31 T 11-10-2018 APT56_22200 c7b90a673b3c34694075270bdf49528d 519 Gene3D G3DSA:3.40.50.980 2 240 5.1E-75 T 11-10-2018 APT56_22200 c7b90a673b3c34694075270bdf49528d 519 Gene3D G3DSA:3.30.300.310 419 518 2.4E-30 T 11-10-2018 APT56_22200 c7b90a673b3c34694075270bdf49528d 519 SUPERFAMILY SSF56801 16 515 1.13E-149 T 11-10-2018 APT56_22200 c7b90a673b3c34694075270bdf49528d 519 Pfam PF00501 AMP-binding enzyme 23 419 1.8E-95 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_22200 c7b90a673b3c34694075270bdf49528d 519 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 8 513 2.1E-238 T 11-10-2018 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 APT56_22200 c7b90a673b3c34694075270bdf49528d 519 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 505 1.5E-20 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_23440 c638685c1a9290ad8ca8f5fdbec599b6 300 Gene3D G3DSA:3.40.50.1820 1 292 1.9E-72 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_23440 c638685c1a9290ad8ca8f5fdbec599b6 300 SUPERFAMILY SSF53474 3 294 6.27E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_23440 c638685c1a9290ad8ca8f5fdbec599b6 300 PRINTS PR00412 Epoxide hydrolase signature 31 49 7.0E-18 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_23440 c638685c1a9290ad8ca8f5fdbec599b6 300 PRINTS PR00412 Epoxide hydrolase signature 236 252 7.0E-18 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_23440 c638685c1a9290ad8ca8f5fdbec599b6 300 PRINTS PR00412 Epoxide hydrolase signature 51 66 7.0E-18 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_23440 c638685c1a9290ad8ca8f5fdbec599b6 300 PRINTS PR00412 Epoxide hydrolase signature 99 112 7.0E-18 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_23440 c638685c1a9290ad8ca8f5fdbec599b6 300 PRINTS PR00412 Epoxide hydrolase signature 270 292 7.0E-18 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_23440 c638685c1a9290ad8ca8f5fdbec599b6 300 Pfam PF12697 Alpha/beta hydrolase family 28 288 8.3E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_13055 d65a699360f1c024aecf1a3cd676ee53 300 PIRSF PIRSF001365 1 294 8.8E-71 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13055 d65a699360f1c024aecf1a3cd676ee53 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 6.5E-11 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13055 d65a699360f1c024aecf1a3cd676ee53 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 6.5E-11 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13055 d65a699360f1c024aecf1a3cd676ee53 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 6.5E-11 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13055 d65a699360f1c024aecf1a3cd676ee53 300 Pfam PF00701 Dihydrodipicolinate synthetase family 6 286 2.7E-51 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13055 d65a699360f1c024aecf1a3cd676ee53 300 SUPERFAMILY SSF51569 4 289 1.88E-79 T 11-10-2018 APT56_13055 d65a699360f1c024aecf1a3cd676ee53 300 SMART SM01130 4 296 8.3E-82 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13055 d65a699360f1c024aecf1a3cd676ee53 300 Gene3D G3DSA:3.20.20.70 1 294 1.4E-81 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_00110 d447871d6c4a7f745bfcd0bb96962464 333 PIRSF PIRSF017082 1 332 1.5E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00110 d447871d6c4a7f745bfcd0bb96962464 333 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 328 6.4E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00110 d447871d6c4a7f745bfcd0bb96962464 333 SUPERFAMILY SSF53850 122 289 1.4E-12 T 11-10-2018 APT56_00110 d447871d6c4a7f745bfcd0bb96962464 333 Gene3D G3DSA:3.40.190.150 37 323 1.8E-104 T 11-10-2018 APT56_00110 d447871d6c4a7f745bfcd0bb96962464 333 Gene3D G3DSA:3.40.190.10 135 258 1.8E-104 T 11-10-2018 APT56_27820 9ddbcac7df570861b252773685a9a9e3 109 SUPERFAMILY SSF54843 1 107 7.98E-39 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_27820 9ddbcac7df570861b252773685a9a9e3 109 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 109 23.929 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27820 9ddbcac7df570861b252773685a9a9e3 109 Gene3D G3DSA:3.90.470.10 1 109 7.6E-41 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_27820 9ddbcac7df570861b252773685a9a9e3 109 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 3.9E-43 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27820 9ddbcac7df570861b252773685a9a9e3 109 Pfam PF00237 Ribosomal protein L22p/L17e 7 107 6.8E-35 T 11-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 APT56_27820 9ddbcac7df570861b252773685a9a9e3 109 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 11-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_23075 0d3f53279cb8026191948519ad4dd122 610 Pfam PF01425 Amidase 74 446 4.0E-87 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_23075 0d3f53279cb8026191948519ad4dd122 610 SUPERFAMILY SSF75304 11 456 7.46E-112 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_23075 0d3f53279cb8026191948519ad4dd122 610 Gene3D G3DSA:3.10.490.10 478 609 5.3E-53 T 11-10-2018 APT56_23075 0d3f53279cb8026191948519ad4dd122 610 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 46 603 5.5E-255 T 11-10-2018 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 APT56_23075 0d3f53279cb8026191948519ad4dd122 610 Gene3D G3DSA:1.20.58.1700 303 376 1.0E-165 T 11-10-2018 APT56_23075 0d3f53279cb8026191948519ad4dd122 610 Gene3D G3DSA:3.90.1300.10 45 450 1.0E-165 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_18950 9c7c3679ff093d4fe9c647daa268b0a5 123 PIRSF PIRSF007028 2 118 5.9E-45 T 11-10-2018 IPR009874 Protein of unknown function DUF1428 APT56_18950 9c7c3679ff093d4fe9c647daa268b0a5 123 Pfam PF07237 Protein of unknown function (DUF1428) 3 102 7.4E-34 T 11-10-2018 IPR009874 Protein of unknown function DUF1428 APT56_18950 9c7c3679ff093d4fe9c647daa268b0a5 123 SUPERFAMILY SSF54909 3 116 4.18E-38 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_18950 9c7c3679ff093d4fe9c647daa268b0a5 123 Gene3D G3DSA:3.30.70.100 1 118 3.6E-36 T 11-10-2018 APT56_21055 6e5b8efde01522e9981e15c618353179 317 PIRSF PIRSF000006 5 303 7.1E-101 T 11-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III APT56_21055 6e5b8efde01522e9981e15c618353179 317 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 136 208 1.4E-13 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_21055 6e5b8efde01522e9981e15c618353179 317 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 223 296 2.3E-12 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_21055 6e5b8efde01522e9981e15c618353179 317 SUPERFAMILY SSF46626 222 303 3.15E-24 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21055 6e5b8efde01522e9981e15c618353179 317 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 44 91 4.0E-19 T 11-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal APT56_21055 6e5b8efde01522e9981e15c618353179 317 SUPERFAMILY SSF46626 64 215 9.31E-30 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21055 6e5b8efde01522e9981e15c618353179 317 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 41 302 1.3E-80 T 11-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III APT56_21055 6e5b8efde01522e9981e15c618353179 317 Gene3D G3DSA:1.10.760.10 189 276 1.0E-70 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21055 6e5b8efde01522e9981e15c618353179 317 Gene3D G3DSA:1.20.58.1490 5 101 2.5E-27 T 11-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily APT56_21055 6e5b8efde01522e9981e15c618353179 317 Gene3D G3DSA:1.10.760.10 111 299 1.0E-70 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_19405 00876293f82439fcfd90a3bc4aec661e 338 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 3 263 31.146 T 11-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type APT56_19405 00876293f82439fcfd90a3bc4aec661e 338 Pfam PF02735 Ku70/Ku80 beta-barrel domain 13 195 1.5E-33 T 11-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 APT56_19405 00876293f82439fcfd90a3bc4aec661e 338 PIRSF PIRSF006493 1 337 7.4E-94 T 11-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type APT56_19405 00876293f82439fcfd90a3bc4aec661e 338 SMART SM00559 54 182 8.9E-30 T 11-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 APT56_19405 00876293f82439fcfd90a3bc4aec661e 338 Gene3D G3DSA:2.40.290.10 4 179 1.2E-16 T 11-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily APT56_19405 00876293f82439fcfd90a3bc4aec661e 338 TIGRFAM TIGR02772 Ku_bact: Ku protein 4 264 4.7E-93 T 11-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type APT56_19405 00876293f82439fcfd90a3bc4aec661e 338 SUPERFAMILY SSF100939 4 263 1.55E-48 T 11-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily APT56_13010 ef5e731b74a29c28d79681616cc4e4ac 396 Pfam PF13379 NMT1-like family 37 275 5.9E-48 T 11-10-2018 APT56_13010 ef5e731b74a29c28d79681616cc4e4ac 396 SUPERFAMILY SSF53850 40 272 2.41E-39 T 11-10-2018 APT56_13010 ef5e731b74a29c28d79681616cc4e4ac 396 Gene3D G3DSA:3.40.190.10 38 121 6.0E-15 T 11-10-2018 APT56_13010 ef5e731b74a29c28d79681616cc4e4ac 396 Gene3D G3DSA:3.40.190.10 168 386 8.1E-37 T 11-10-2018 APT56_24195 ccb53333cad1c3299f7c3f757c2cc386 122 Gene3D G3DSA:3.10.180.10 1 121 1.0E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_24195 ccb53333cad1c3299f7c3f757c2cc386 122 SUPERFAMILY SSF54593 2 120 8.32E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 15 773 33.276 T 11-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 22 757 3.0E-230 T 11-10-2018 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 Gene3D G3DSA:1.10.268.10 402 487 5.4E-187 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 676 714 0.0048 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 574 616 0.37 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 Gene3D G3DSA:3.90.199.10 43 516 5.4E-187 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 Gene3D G3DSA:3.30.1360.40 248 364 5.4E-187 T 11-10-2018 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 SUPERFAMILY SSF101904 531 722 4.97E-46 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 43 499 5.1E-129 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 SUPERFAMILY SSF56719 42 516 4.58E-148 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 SMART SM00434 22 494 5.8E-218 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_09355 f6ddb6fff4e8f25b89724f7ee93eda7f 773 Gene3D G3DSA:2.120.10.90 530 722 1.4E-25 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APT56_24370 9a8cfe56fbcea505700da47b3b73729c 176 Gene3D G3DSA:3.40.50.960 4 151 1.5E-49 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_24370 9a8cfe56fbcea505700da47b3b73729c 176 SUPERFAMILY SSF52121 7 151 1.96E-49 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_24370 9a8cfe56fbcea505700da47b3b73729c 176 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 10 151 26.382 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_24370 9a8cfe56fbcea505700da47b3b73729c 176 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 16 147 6.1E-37 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_24370 9a8cfe56fbcea505700da47b3b73729c 176 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 14 148 1.3E-47 T 11-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_23750 e94b222be6e950d793a185b402053174 429 Gene3D G3DSA:1.10.10.10 361 420 2.8E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23750 e94b222be6e950d793a185b402053174 429 Pfam PF03861 ANTAR domain 364 414 1.2E-17 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 APT56_23750 e94b222be6e950d793a185b402053174 429 SUPERFAMILY SSF52172 341 414 1.14E-12 T 11-10-2018 IPR011006 CheY-like superfamily APT56_23750 e94b222be6e950d793a185b402053174 429 Pfam PF08376 Nitrate and nitrite sensing 39 281 1.6E-39 T 11-10-2018 IPR013587 Nitrate/nitrite sensing protein APT56_23750 e94b222be6e950d793a185b402053174 429 SMART SM01012 359 414 8.5E-16 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 APT56_19910 9be2df3bfb2495c3dad017512b06fd6f 753 Pfam PF13614 AAA domain 559 675 5.4E-8 T 11-10-2018 IPR025669 AAA domain APT56_19910 9be2df3bfb2495c3dad017512b06fd6f 753 TIGRFAM TIGR01005 eps_transp_fam: exopolysaccharide transport protein family 21 745 2.9E-143 T 11-10-2018 IPR005700 Exopolysaccharide biosynthesis protein ExoP-like GO:0045226 APT56_19910 9be2df3bfb2495c3dad017512b06fd6f 753 Pfam PF02706 Chain length determinant protein 25 110 1.7E-11 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 APT56_19910 9be2df3bfb2495c3dad017512b06fd6f 753 Gene3D G3DSA:3.40.50.300 465 747 2.7E-61 T 11-10-2018 APT56_19910 9be2df3bfb2495c3dad017512b06fd6f 753 Pfam PF13807 G-rich domain on putative tyrosine kinase 391 472 7.9E-30 T 11-10-2018 IPR032807 Tyrosine kinase, G-rich domain APT56_19910 9be2df3bfb2495c3dad017512b06fd6f 753 SUPERFAMILY SSF52540 550 728 2.57E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11150 1dfb676e7b032795448c7d85dadbbec6 285 Pfam PF05448 Acetyl xylan esterase (AXE1) 133 171 1.2E-4 T 11-10-2018 IPR008391 Acetyl xylan esterase APT56_11150 1dfb676e7b032795448c7d85dadbbec6 285 SUPERFAMILY SSF53474 11 279 3.63E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_11150 1dfb676e7b032795448c7d85dadbbec6 285 Gene3D G3DSA:3.40.50.1820 18 277 2.4E-27 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_13170 b92f780ee598ef881f689cc19ba2bb0e 272 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 59 161 6.0E-19 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_13170 b92f780ee598ef881f689cc19ba2bb0e 272 SUPERFAMILY SSF161098 59 255 3.4E-34 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13170 b92f780ee598ef881f689cc19ba2bb0e 272 Gene3D G3DSA:1.10.3720.10 47 271 1.2E-38 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13170 b92f780ee598ef881f689cc19ba2bb0e 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 269 6.1E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_16965 79ba20ddd30297d1f2a46fe661ad6fe8 328 Gene3D G3DSA:3.40.190.150 34 318 3.3E-108 T 11-10-2018 APT56_16965 79ba20ddd30297d1f2a46fe661ad6fe8 328 Gene3D G3DSA:3.40.190.10 130 253 3.3E-108 T 11-10-2018 APT56_16965 79ba20ddd30297d1f2a46fe661ad6fe8 328 SUPERFAMILY SSF53850 115 294 4.93E-14 T 11-10-2018 APT56_16965 79ba20ddd30297d1f2a46fe661ad6fe8 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 324 7.8E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_16965 79ba20ddd30297d1f2a46fe661ad6fe8 328 PIRSF PIRSF017082 1 327 8.7E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_06215 373a9490ad050241ba46789a9216a02b 294 Pfam PF03466 LysR substrate binding domain 89 284 4.1E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_06215 373a9490ad050241ba46789a9216a02b 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.1E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06215 373a9490ad050241ba46789a9216a02b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.5E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06215 373a9490ad050241ba46789a9216a02b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.5E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06215 373a9490ad050241ba46789a9216a02b 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.5E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06215 373a9490ad050241ba46789a9216a02b 294 Gene3D G3DSA:1.10.10.10 3 92 8.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06215 373a9490ad050241ba46789a9216a02b 294 SUPERFAMILY SSF53850 90 288 1.99E-37 T 11-10-2018 APT56_06215 373a9490ad050241ba46789a9216a02b 294 Gene3D G3DSA:3.40.190.10 100 280 1.8E-61 T 11-10-2018 APT56_06215 373a9490ad050241ba46789a9216a02b 294 SUPERFAMILY SSF46785 3 83 3.03E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_06215 373a9490ad050241ba46789a9216a02b 294 Gene3D G3DSA:3.40.190.10 160 254 1.8E-61 T 11-10-2018 APT56_22530 4422782d6dfea3da78e205a61af29e04 204 Gene3D G3DSA:3.40.30.10 4 192 1.2E-45 T 11-10-2018 APT56_22530 4422782d6dfea3da78e205a61af29e04 204 Gene3D G3DSA:1.20.1050.10 84 188 1.2E-45 T 11-10-2018 APT56_22530 4422782d6dfea3da78e205a61af29e04 204 SUPERFAMILY SSF52833 1 86 7.92E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_22530 4422782d6dfea3da78e205a61af29e04 204 Pfam PF13410 Glutathione S-transferase, C-terminal domain 140 184 5.3E-6 T 11-10-2018 APT56_22530 4422782d6dfea3da78e205a61af29e04 204 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 76 3.6E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_22530 4422782d6dfea3da78e205a61af29e04 204 SUPERFAMILY SSF47616 86 198 3.98E-15 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_07230 00fafc95beb645d98e1801f71d256440 338 Gene3D G3DSA:3.40.50.1100 67 165 1.2E-122 T 11-10-2018 APT56_07230 00fafc95beb645d98e1801f71d256440 338 Gene3D G3DSA:3.40.50.1100 8 328 1.2E-122 T 11-10-2018 APT56_07230 00fafc95beb645d98e1801f71d256440 338 Hamap MF_00807 1-aminocyclopropane-1-carboxylate deaminase [acdS]. 2 338 70.764 T 11-10-2018 IPR020601 1-aminocyclopropane-1-carboxylate deaminase, bacterial GO:0008660|GO:0009310|GO:0030170 KEGG: 00270+3.5.99.7 APT56_07230 00fafc95beb645d98e1801f71d256440 338 SUPERFAMILY SSF53686 4 334 2.19E-102 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_07230 00fafc95beb645d98e1801f71d256440 338 PIRSF PIRSF006278 1 337 5.3E-125 T 11-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase APT56_07230 00fafc95beb645d98e1801f71d256440 338 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 12 321 1.0E-47 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_07230 00fafc95beb645d98e1801f71d256440 338 TIGRFAM TIGR01274 ACC_deam: 1-aminocyclopropane-1-carboxylate deaminase 3 337 3.6E-185 T 11-10-2018 IPR005965 1-aminocyclopropane-1-carboxylate deaminase GO:0008660|GO:0009310|GO:0030170 KEGG: 00270+3.5.99.7 APT56_17355 54972f944e055babce1133bbebe4b5d8 441 Pfam PF00083 Sugar (and other) transporter 18 228 1.0E-21 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_17355 54972f944e055babce1133bbebe4b5d8 441 Gene3D G3DSA:1.20.1250.20 13 432 2.6E-56 T 11-10-2018 APT56_17355 54972f944e055babce1133bbebe4b5d8 441 SUPERFAMILY SSF103473 15 429 2.62E-60 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_06235 90e14741d12cef6d0edee3dec64f27db 287 Gene3D G3DSA:3.40.50.1820 16 286 5.2E-55 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_06235 90e14741d12cef6d0edee3dec64f27db 287 SUPERFAMILY SSF53474 33 268 5.08E-17 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_19395 ad56a1553a8cc9b802a3a537e97793a0 481 PIRSF PIRSF006060 7 475 2.7E-71 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_19395 ad56a1553a8cc9b802a3a537e97793a0 481 Gene3D G3DSA:1.20.1740.10 22 469 1.1E-58 T 11-10-2018 APT56_19395 ad56a1553a8cc9b802a3a537e97793a0 481 Pfam PF00324 Amino acid permease 28 438 3.9E-100 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 APT56_15840 ad6762329f5bfca303e6e9eb95895913 296 Pfam PF00795 Carbon-nitrogen hydrolase 16 267 3.7E-55 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_15840 ad6762329f5bfca303e6e9eb95895913 296 SUPERFAMILY SSF56317 14 286 5.89E-78 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_15840 ad6762329f5bfca303e6e9eb95895913 296 Gene3D G3DSA:3.60.110.10 13 285 8.3E-91 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_02160 482b81ea72dca3a34ab23b1b83f8ca5e 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 1.4E-38 T 11-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 APT56_02160 482b81ea72dca3a34ab23b1b83f8ca5e 156 Gene3D G3DSA:1.20.5.620 62 122 4.2E-9 T 11-10-2018 APT56_02160 482b81ea72dca3a34ab23b1b83f8ca5e 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 1.3E-27 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APT56_02160 482b81ea72dca3a34ab23b1b83f8ca5e 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 11.435 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APT56_02160 482b81ea72dca3a34ab23b1b83f8ca5e 156 SUPERFAMILY SSF81573 67 121 4.18E-7 T 11-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily APT56_16250 18dbb484e207b1648f114354234aaa3c 81 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 1 67 2.7E-26 T 11-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system APT56_08200 6339295497b55cb1b9fa270d966032be 430 Gene3D G3DSA:3.40.50.1370 91 394 2.2E-101 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 90 398 1.3E-89 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_08200 6339295497b55cb1b9fa270d966032be 430 Gene3D G3DSA:3.40.50.1370 218 385 2.2E-101 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 SUPERFAMILY SSF53671 90 399 5.24E-89 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 134 141 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 90 229 8.9E-42 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00101 Aspartate carbamoyltransferase signature 313 322 3.9E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00101 Aspartate carbamoyltransferase signature 217 234 3.9E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00101 Aspartate carbamoyltransferase signature 124 146 3.9E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00101 Aspartate carbamoyltransferase signature 163 172 3.9E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00101 Aspartate carbamoyltransferase signature 379 393 3.9E-29 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 153 6.2E-19 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 363 386 6.2E-19 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 218 229 6.2E-19 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 348 357 6.2E-19 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08200 6339295497b55cb1b9fa270d966032be 430 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 242 396 3.6E-29 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 APT56_16505 d8b7c3260ab6898a14f9131ec84208bb 509 Gene3D G3DSA:1.20.1250.20 273 499 7.5E-7 T 11-10-2018 APT56_16505 d8b7c3260ab6898a14f9131ec84208bb 509 Pfam PF07690 Major Facilitator Superfamily 20 403 1.8E-37 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_16505 d8b7c3260ab6898a14f9131ec84208bb 509 Gene3D G3DSA:1.20.1720.10 15 223 1.2E-34 T 11-10-2018 APT56_16505 d8b7c3260ab6898a14f9131ec84208bb 509 SUPERFAMILY SSF103473 7 497 1.15E-47 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_04285 3d8408f064e5fe74814f5999a8b0043a 354 Pfam PF01979 Amidohydrolase family 16 320 2.0E-21 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_04285 3d8408f064e5fe74814f5999a8b0043a 354 Hamap MF_00219 Dihydroorotase [pyrC]. 7 353 45.895 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_04285 3d8408f064e5fe74814f5999a8b0043a 354 ProSitePatterns PS00483 Dihydroorotase signature 2. 255 266 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_04285 3d8408f064e5fe74814f5999a8b0043a 354 SUPERFAMILY SSF51556 7 352 1.44E-141 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_04285 3d8408f064e5fe74814f5999a8b0043a 354 Gene3D G3DSA:3.20.20.140 8 353 2.7E-102 T 11-10-2018 APT56_04285 3d8408f064e5fe74814f5999a8b0043a 354 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 9 351 1.7E-139 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_04285 3d8408f064e5fe74814f5999a8b0043a 354 ProSitePatterns PS00482 Dihydroorotase signature 1. 16 24 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_04285 3d8408f064e5fe74814f5999a8b0043a 354 PIRSF PIRSF001237 5 354 9.0E-135 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_19560 1cc9f017bc81aa254b57f270c7d0eb7e 284 SUPERFAMILY SSF56529 60 277 2.35E-82 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_19560 1cc9f017bc81aa254b57f270c7d0eb7e 284 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 276 8.1E-73 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_19560 1cc9f017bc81aa254b57f270c7d0eb7e 284 Gene3D G3DSA:3.90.850.10 67 282 5.6E-87 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_07605 0e051fbb3da45d2e3c7c30900137680b 303 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 301 1.4E-117 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APT56_07605 0e051fbb3da45d2e3c7c30900137680b 303 Gene3D G3DSA:3.40.50.1100 11 297 1.1E-107 T 11-10-2018 APT56_07605 0e051fbb3da45d2e3c7c30900137680b 303 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 290 1.0E-65 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_07605 0e051fbb3da45d2e3c7c30900137680b 303 Gene3D G3DSA:3.40.50.1100 43 162 1.1E-107 T 11-10-2018 APT56_07605 0e051fbb3da45d2e3c7c30900137680b 303 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 38 56 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 APT56_07605 0e051fbb3da45d2e3c7c30900137680b 303 SUPERFAMILY SSF53686 4 300 2.75E-90 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_07605 0e051fbb3da45d2e3c7c30900137680b 303 TIGRFAM TIGR01138 cysM: cysteine synthase B 7 301 4.1E-139 T 11-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APT56_04130 212f2a80e4b25b324fccda541a351738 190 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.968 T 11-10-2018 IPR022927 RNA pyrophosphohydrolase RppH APT56_04130 212f2a80e4b25b324fccda541a351738 190 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APT56_04130 212f2a80e4b25b324fccda541a351738 190 Pfam PF00293 NUDIX domain 7 136 1.6E-23 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_04130 212f2a80e4b25b324fccda541a351738 190 PRINTS PR00502 NUDIX hydrolase family signature 33 47 9.2E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT56_04130 212f2a80e4b25b324fccda541a351738 190 PRINTS PR00502 NUDIX hydrolase family signature 47 62 9.2E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APT56_04130 212f2a80e4b25b324fccda541a351738 190 Gene3D G3DSA:3.90.79.10 1 159 1.1E-44 T 11-10-2018 APT56_04130 212f2a80e4b25b324fccda541a351738 190 SUPERFAMILY SSF55811 6 165 3.66E-31 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_04785 91ec45a5fa848a91eec7b66c9bc2738a 370 Gene3D G3DSA:2.40.110.10 128 225 2.2E-16 T 11-10-2018 APT56_04785 91ec45a5fa848a91eec7b66c9bc2738a 370 SUPERFAMILY SSF47203 226 366 2.74E-33 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_04785 91ec45a5fa848a91eec7b66c9bc2738a 370 Gene3D G3DSA:1.20.140.10 233 370 7.6E-31 T 11-10-2018 APT56_04785 91ec45a5fa848a91eec7b66c9bc2738a 370 SUPERFAMILY SSF56645 1 216 9.42E-41 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_04785 91ec45a5fa848a91eec7b66c9bc2738a 370 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 115 3.2E-16 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_04785 91ec45a5fa848a91eec7b66c9bc2738a 370 Gene3D G3DSA:1.10.540.10 1 118 1.3E-24 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_04785 91ec45a5fa848a91eec7b66c9bc2738a 370 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 364 1.9E-24 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 Pfam PF01145 SPFH domain / Band 7 family 26 195 9.4E-31 T 11-10-2018 IPR001107 Band 7 domain APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 PRINTS PR00721 Stomatin signature 156 174 5.0E-32 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 PRINTS PR00721 Stomatin signature 77 98 5.0E-32 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 PRINTS PR00721 Stomatin signature 112 129 5.0E-32 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 PRINTS PR00721 Stomatin signature 132 155 5.0E-32 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 PRINTS PR00721 Stomatin signature 175 196 5.0E-32 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 PRINTS PR00721 Stomatin signature 29 51 5.0E-32 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 Pfam PF16200 C-terminal region of band_7 246 305 2.1E-28 T 11-10-2018 IPR032435 Band 7, C-terminal extension Reactome: R-HSA-8949664 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 SUPERFAMILY SSF117892 53 187 3.4E-41 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 Gene3D G3DSA:3.30.479.30 50 182 1.9E-41 T 11-10-2018 APT56_12375 00065f96a79741da7cb1bd7edceb35c1 308 SMART SM00244 22 180 1.6E-57 T 11-10-2018 IPR001107 Band 7 domain APT56_10065 c6ce134fc25b6f460a74395129510ab5 264 Gene3D G3DSA:3.90.1530.30 44 91 1.9E-5 T 11-10-2018 APT56_10065 c6ce134fc25b6f460a74395129510ab5 264 Gene3D G3DSA:1.10.10.2830 110 220 1.2E-13 T 11-10-2018 APT56_10065 c6ce134fc25b6f460a74395129510ab5 264 SUPERFAMILY SSF110849 45 124 3.14E-7 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily APT56_10065 c6ce134fc25b6f460a74395129510ab5 264 Pfam PF02195 ParB-like nuclease domain 46 121 4.4E-5 T 11-10-2018 IPR003115 ParB/Sulfiredoxin APT56_10065 c6ce134fc25b6f460a74395129510ab5 264 SUPERFAMILY SSF109709 118 220 2.22E-16 T 11-10-2018 APT56_02715 633370fde5d2a2dbbfdda2aadcaa0783 345 Pfam PF00107 Zinc-binding dehydrogenase 179 303 4.5E-23 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_02715 633370fde5d2a2dbbfdda2aadcaa0783 345 Gene3D G3DSA:3.90.180.10 9 331 8.8E-103 T 11-10-2018 APT56_02715 633370fde5d2a2dbbfdda2aadcaa0783 345 SUPERFAMILY SSF51735 143 310 5.65E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_02715 633370fde5d2a2dbbfdda2aadcaa0783 345 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT56_02715 633370fde5d2a2dbbfdda2aadcaa0783 345 SMART SM00829 8 343 2.9E-5 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_02715 633370fde5d2a2dbbfdda2aadcaa0783 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 139 6.3E-32 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_02715 633370fde5d2a2dbbfdda2aadcaa0783 345 SUPERFAMILY SSF50129 4 177 4.72E-52 T 11-10-2018 IPR011032 GroES-like superfamily APT56_02715 633370fde5d2a2dbbfdda2aadcaa0783 345 Gene3D G3DSA:3.40.50.720 156 292 8.8E-103 T 11-10-2018 APT56_27895 2396044d4bf3188da994202ada991e43 435 SUPERFAMILY SSF56112 33 190 1.15E-10 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_27895 2396044d4bf3188da994202ada991e43 435 Gene3D G3DSA:1.10.510.10 22 196 9.5E-11 T 11-10-2018 APT56_11215 4e7be9fa1e5e07e6b8e78e5e05758e13 442 Pfam PF07690 Major Facilitator Superfamily 257 432 8.7E-9 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_11215 4e7be9fa1e5e07e6b8e78e5e05758e13 442 Pfam PF00083 Sugar (and other) transporter 21 224 1.1E-21 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_11215 4e7be9fa1e5e07e6b8e78e5e05758e13 442 SUPERFAMILY SSF103473 20 426 3.4E-62 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_11215 4e7be9fa1e5e07e6b8e78e5e05758e13 442 Gene3D G3DSA:1.20.1250.20 16 428 7.1E-59 T 11-10-2018 APT56_06245 f461f1f4ea2e611388a49fcd2ca71374 273 SUPERFAMILY SSF161098 65 251 2.35E-24 T 11-10-2018 IPR035906 MetI-like superfamily APT56_06245 f461f1f4ea2e611388a49fcd2ca71374 273 Gene3D G3DSA:1.10.3720.10 59 271 1.7E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_06245 f461f1f4ea2e611388a49fcd2ca71374 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 270 2.5E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_09540 606ccdd12c8ce879cd9dba8c03a7033e 355 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 211 220 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 APT56_09540 606ccdd12c8ce879cd9dba8c03a7033e 355 SUPERFAMILY SSF53383 5 354 8.34E-80 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_09540 606ccdd12c8ce879cd9dba8c03a7033e 355 Gene3D G3DSA:3.90.1150.10 20 344 2.9E-106 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_09540 606ccdd12c8ce879cd9dba8c03a7033e 355 Gene3D G3DSA:3.40.640.10 38 263 2.9E-106 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_09540 606ccdd12c8ce879cd9dba8c03a7033e 355 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 354 2.5E-91 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT56_09540 606ccdd12c8ce879cd9dba8c03a7033e 355 Pfam PF00155 Aminotransferase class I and II 25 351 7.7E-58 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_09540 606ccdd12c8ce879cd9dba8c03a7033e 355 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 355 55.945 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT56_16355 7236a325c19c74999839b856d8a93f14 148 Gene3D G3DSA:3.40.50.620 1 147 5.6E-38 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_16355 7236a325c19c74999839b856d8a93f14 148 Pfam PF00582 Universal stress protein family 1 145 8.6E-31 T 11-10-2018 IPR006016 UspA APT56_16355 7236a325c19c74999839b856d8a93f14 148 PRINTS PR01438 Universal stress protein signature 105 117 4.8E-16 T 11-10-2018 IPR006015 Universal stress protein A APT56_16355 7236a325c19c74999839b856d8a93f14 148 PRINTS PR01438 Universal stress protein signature 123 145 4.8E-16 T 11-10-2018 IPR006015 Universal stress protein A APT56_16355 7236a325c19c74999839b856d8a93f14 148 PRINTS PR01438 Universal stress protein signature 2 20 4.8E-16 T 11-10-2018 IPR006015 Universal stress protein A APT56_16355 7236a325c19c74999839b856d8a93f14 148 SUPERFAMILY SSF52402 1 145 1.61E-37 T 11-10-2018 APT56_27650 44e1f6ab92133188762725730d4ed769 115 SUPERFAMILY SSF54913 5 107 1.22E-33 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta APT56_27650 44e1f6ab92133188762725730d4ed769 115 Pfam PF03091 CutA1 divalent ion tolerance protein 9 106 1.2E-28 T 11-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 APT56_27650 44e1f6ab92133188762725730d4ed769 115 Gene3D G3DSA:3.30.70.120 3 115 3.2E-32 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal APT56_03490 db3df88c40baa1f970d00d4057a33212 354 SUPERFAMILY SSF51735 7 173 3.81E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_03490 db3df88c40baa1f970d00d4057a33212 354 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 151 167 - T 11-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_03490 db3df88c40baa1f970d00d4057a33212 354 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 174 325 1.2E-17 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_03490 db3df88c40baa1f970d00d4057a33212 354 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 10 148 1.3E-36 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT56_03490 db3df88c40baa1f970d00d4057a33212 354 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 9 354 6.8E-126 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_03490 db3df88c40baa1f970d00d4057a33212 354 Gene3D G3DSA:3.30.360.10 154 322 2.4E-126 T 11-10-2018 APT56_03490 db3df88c40baa1f970d00d4057a33212 354 Gene3D G3DSA:3.40.50.720 10 340 2.4E-126 T 11-10-2018 APT56_03490 db3df88c40baa1f970d00d4057a33212 354 SUPERFAMILY SSF55347 156 322 2.29E-48 T 11-10-2018 APT56_03490 db3df88c40baa1f970d00d4057a33212 354 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 9 348 41.966 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_03490 db3df88c40baa1f970d00d4057a33212 354 SMART SM00859 10 148 7.1E-57 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APT56_26940 aae0c70ccf8e57b1109c8e10e06e7842 488 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 264 486 5.8E-84 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related APT56_26940 aae0c70ccf8e57b1109c8e10e06e7842 488 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 13 235 2.0E-37 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related APT56_26940 aae0c70ccf8e57b1109c8e10e06e7842 488 SUPERFAMILY SSF52540 296 486 6.06E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26940 aae0c70ccf8e57b1109c8e10e06e7842 488 Gene3D G3DSA:3.40.50.300 243 488 5.3E-97 T 11-10-2018 APT56_26940 aae0c70ccf8e57b1109c8e10e06e7842 488 Gene3D G3DSA:3.40.50.300 1 236 1.4E-61 T 11-10-2018 APT56_26940 aae0c70ccf8e57b1109c8e10e06e7842 488 TIGRFAM TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase 2 488 5.1E-198 T 11-10-2018 IPR022489 Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 APT56_26940 aae0c70ccf8e57b1109c8e10e06e7842 488 SUPERFAMILY SSF52540 43 232 8.36E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_13485 c062bdd42bfe6717e0cbe2255abfb152 395 Gene3D G3DSA:1.10.3720.10 181 391 4.6E-32 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13485 c062bdd42bfe6717e0cbe2255abfb152 395 SUPERFAMILY SSF161098 88 155 8.72E-11 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13485 c062bdd42bfe6717e0cbe2255abfb152 395 SUPERFAMILY SSF161098 190 376 3.79E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13485 c062bdd42bfe6717e0cbe2255abfb152 395 Gene3D G3DSA:1.10.3720.10 83 177 6.9E-8 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13485 c062bdd42bfe6717e0cbe2255abfb152 395 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 87 151 1.4E-15 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_13485 c062bdd42bfe6717e0cbe2255abfb152 395 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 390 1.4E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_25315 ae8e5762d195d2f7afee34ac6f6aff96 201 Pfam PF06438 Heme-binding protein A (HasA) 37 196 8.9E-13 T 11-10-2018 IPR010495 Haem-binding HasA APT56_25315 ae8e5762d195d2f7afee34ac6f6aff96 201 SUPERFAMILY SSF54621 30 165 1.14E-17 T 11-10-2018 IPR036912 Haem-binding HasA superfamily APT56_25315 ae8e5762d195d2f7afee34ac6f6aff96 201 Gene3D G3DSA:3.30.1500.10 8 200 7.8E-36 T 11-10-2018 IPR036912 Haem-binding HasA superfamily APT56_03050 b5fa6ff7341e183327c274dac3b0f5a2 265 SUPERFAMILY SSF55073 106 259 7.85E-48 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_03050 b5fa6ff7341e183327c274dac3b0f5a2 265 Gene3D G3DSA:3.30.70.270 90 262 5.1E-56 T 11-10-2018 APT56_03050 b5fa6ff7341e183327c274dac3b0f5a2 265 SMART SM00267 90 261 3.9E-62 T 11-10-2018 IPR000160 GGDEF domain APT56_03050 b5fa6ff7341e183327c274dac3b0f5a2 265 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 97 259 4.1E-49 T 11-10-2018 IPR000160 GGDEF domain APT56_03050 b5fa6ff7341e183327c274dac3b0f5a2 265 Pfam PF00990 Diguanylate cyclase, GGDEF domain 103 257 7.8E-45 T 11-10-2018 IPR000160 GGDEF domain APT56_21870 fd6952337e52c01033693798134625d0 267 Gene3D G3DSA:3.40.630.30 28 168 5.0E-27 T 11-10-2018 APT56_21870 fd6952337e52c01033693798134625d0 267 SUPERFAMILY SSF55729 26 232 1.02E-42 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_21870 fd6952337e52c01033693798134625d0 267 Pfam PF13444 Acetyltransferase (GNAT) domain 42 143 2.7E-32 T 11-10-2018 APT56_02050 6c0148117fbb81a56bd4b429a9f2b1c0 124 Hamap MF_00791 Protein ApaG [apaG]. 1 124 33.118 T 11-10-2018 IPR023065 Uncharacterised protein family ApaG APT56_02050 6c0148117fbb81a56bd4b429a9f2b1c0 124 Pfam PF04379 ApaG domain 16 101 3.9E-37 T 11-10-2018 IPR007474 ApaG domain APT56_02050 6c0148117fbb81a56bd4b429a9f2b1c0 124 Gene3D G3DSA:2.60.40.1470 1 124 1.0E-55 T 11-10-2018 IPR036767 ApaG domain superfamily APT56_02050 6c0148117fbb81a56bd4b429a9f2b1c0 124 SUPERFAMILY SSF110069 5 124 7.98E-50 T 11-10-2018 IPR036767 ApaG domain superfamily APT56_13730 85c164c3e67fc9b27f0a41a5c932b99f 565 Gene3D G3DSA:3.40.50.10490 43 213 1.3E-38 T 11-10-2018 APT56_13730 85c164c3e67fc9b27f0a41a5c932b99f 565 Gene3D G3DSA:3.40.50.10490 297 388 1.5E-7 T 11-10-2018 APT56_13730 85c164c3e67fc9b27f0a41a5c932b99f 565 SUPERFAMILY SSF53697 43 394 4.2E-68 T 11-10-2018 APT56_13730 85c164c3e67fc9b27f0a41a5c932b99f 565 Pfam PF00342 Phosphoglucose isomerase 76 288 1.2E-16 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_13730 85c164c3e67fc9b27f0a41a5c932b99f 565 Gene3D G3DSA:3.40.50.10490 214 296 4.2E-6 T 11-10-2018 APT56_13730 85c164c3e67fc9b27f0a41a5c932b99f 565 PRINTS PR00662 Glucose-6-phosphate isomerase signature 266 287 3.2E-8 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_13730 85c164c3e67fc9b27f0a41a5c932b99f 565 PRINTS PR00662 Glucose-6-phosphate isomerase signature 79 98 3.2E-8 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_13730 85c164c3e67fc9b27f0a41a5c932b99f 565 PRINTS PR00662 Glucose-6-phosphate isomerase signature 191 209 3.2E-8 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_19655 d32667ea03280296eeac508e7f6b0f8d 288 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 275 7.7E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_26120 f959360f7152186779041c85b1d74134 179 Gene3D G3DSA:2.60.120.10 2 156 9.4E-53 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_26120 f959360f7152186779041c85b1d74134 179 Pfam PF03079 ARD/ARD' family 23 164 1.1E-31 T 11-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 APT56_26120 f959360f7152186779041c85b1d74134 179 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 171 38.305 T 11-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 APT56_26120 f959360f7152186779041c85b1d74134 179 SUPERFAMILY SSF51182 18 176 6.68E-40 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_27500 1eecab1f63951b3c78b22cfb38d20437 123 Pfam PF13663 Domain of unknown function (DUF4148) 88 119 1.6E-6 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_27500 1eecab1f63951b3c78b22cfb38d20437 123 Pfam PF13663 Domain of unknown function (DUF4148) 6 47 4.0E-10 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_16440 eb58801f2777f756f535664b63b18faa 237 SMART SM00382 37 227 7.2E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_16440 eb58801f2777f756f535664b63b18faa 237 Pfam PF00005 ABC transporter 28 174 5.0E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_16440 eb58801f2777f756f535664b63b18faa 237 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_16440 eb58801f2777f756f535664b63b18faa 237 Gene3D G3DSA:3.40.50.300 7 236 5.0E-68 T 11-10-2018 APT56_16440 eb58801f2777f756f535664b63b18faa 237 SUPERFAMILY SSF52540 13 226 1.4E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02665 5e9e9c9e5591b7bf74bdf8c493d3a6e3 443 Gene3D G3DSA:1.20.1600.10 26 443 5.3E-107 T 11-10-2018 APT56_02665 5e9e9c9e5591b7bf74bdf8c493d3a6e3 443 SUPERFAMILY SSF56954 28 439 4.84E-82 T 11-10-2018 APT56_02665 5e9e9c9e5591b7bf74bdf8c493d3a6e3 443 Pfam PF02321 Outer membrane efflux protein 240 423 2.1E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_02665 5e9e9c9e5591b7bf74bdf8c493d3a6e3 443 Pfam PF02321 Outer membrane efflux protein 28 215 6.9E-21 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_02665 5e9e9c9e5591b7bf74bdf8c493d3a6e3 443 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 25 439 1.9E-90 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 APT56_05140 f310b17a23903478c96ee896ae2b50af 523 PIRSF PIRSF002741 8 520 1.3E-87 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_05140 f310b17a23903478c96ee896ae2b50af 523 Gene3D G3DSA:3.10.105.10 287 496 4.4E-48 T 11-10-2018 APT56_05140 f310b17a23903478c96ee896ae2b50af 523 Gene3D G3DSA:3.40.190.10 16 286 3.0E-63 T 11-10-2018 APT56_05140 f310b17a23903478c96ee896ae2b50af 523 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 65 435 7.8E-82 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_05140 f310b17a23903478c96ee896ae2b50af 523 SUPERFAMILY SSF53850 17 505 4.16E-122 T 11-10-2018 APT56_06395 6d4e59443bb09c0b4a325d793c117bd3 158 SUPERFAMILY SSF56770 9 151 1.31E-65 T 11-10-2018 APT56_06395 6d4e59443bb09c0b4a325d793c117bd3 158 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 151 41.224 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06395 6d4e59443bb09c0b4a325d793c117bd3 158 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 37 145 2.8E-22 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06395 6d4e59443bb09c0b4a325d793c117bd3 158 Gene3D G3DSA:3.40.50.12280 2 158 1.8E-77 T 11-10-2018 APT56_06395 6d4e59443bb09c0b4a325d793c117bd3 158 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06395 6d4e59443bb09c0b4a325d793c117bd3 158 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 151 2.0E-75 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06880 b65af6d0bc66484bb6fc98f70e5cd402 305 Gene3D G3DSA:3.20.20.100 26 288 2.7E-44 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_06880 b65af6d0bc66484bb6fc98f70e5cd402 305 Pfam PF00248 Aldo/keto reductase family 47 287 3.6E-31 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_06880 b65af6d0bc66484bb6fc98f70e5cd402 305 SUPERFAMILY SSF51430 32 289 4.19E-47 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_17540 b444394ec369546e902ad4b2044a659f 229 Pfam PF00005 ABC transporter 28 176 6.6E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17540 b444394ec369546e902ad4b2044a659f 229 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_17540 b444394ec369546e902ad4b2044a659f 229 SUPERFAMILY SSF52540 9 227 8.6E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17540 b444394ec369546e902ad4b2044a659f 229 Gene3D G3DSA:3.40.50.300 7 228 3.8E-65 T 11-10-2018 APT56_17540 b444394ec369546e902ad4b2044a659f 229 SMART SM00382 37 225 4.6E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08520 65a135290c5d0bacf9b5c164220b50e7 170 Pfam PF00583 Acetyltransferase (GNAT) family 49 132 9.4E-10 T 11-10-2018 IPR000182 GNAT domain APT56_08520 65a135290c5d0bacf9b5c164220b50e7 170 Gene3D G3DSA:3.40.630.30 1 162 2.3E-19 T 11-10-2018 APT56_08520 65a135290c5d0bacf9b5c164220b50e7 170 SUPERFAMILY SSF55729 1 137 1.45E-18 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_24350 0d6960ce879385e489da950aea1545b4 188 Gene3D G3DSA:3.90.950.20 7 182 4.9E-55 T 11-10-2018 IPR036653 CinA-like, C-terminal APT56_24350 0d6960ce879385e489da950aea1545b4 188 Pfam PF02464 Competence-damaged protein 25 180 4.3E-53 T 11-10-2018 IPR008136 CinA, C-terminal APT56_24350 0d6960ce879385e489da950aea1545b4 188 SUPERFAMILY SSF142433 21 181 8.89E-51 T 11-10-2018 IPR036653 CinA-like, C-terminal APT56_24350 0d6960ce879385e489da950aea1545b4 188 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 30 177 5.9E-41 T 11-10-2018 IPR008136 CinA, C-terminal APT56_25355 dcc3a6efb143341dd31381d1bfafd6e2 436 PIRSF PIRSF002808 2 436 1.8E-38 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 APT56_25355 dcc3a6efb143341dd31381d1bfafd6e2 436 SUPERFAMILY SSF103473 12 429 1.26E-81 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_25355 dcc3a6efb143341dd31381d1bfafd6e2 436 Gene3D G3DSA:1.20.1250.20 12 208 5.3E-50 T 11-10-2018 APT56_25355 dcc3a6efb143341dd31381d1bfafd6e2 436 Gene3D G3DSA:1.20.1250.20 239 433 1.7E-26 T 11-10-2018 APT56_25355 dcc3a6efb143341dd31381d1bfafd6e2 436 Pfam PF07690 Major Facilitator Superfamily 26 391 4.5E-57 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_25355 dcc3a6efb143341dd31381d1bfafd6e2 436 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 28 428 1.8E-126 T 11-10-2018 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 ProSitePatterns PS00674 AAA-protein family signature. 297 315 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 SUPERFAMILY SSF140990 408 606 2.22E-75 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 194 326 1.9E-45 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 Gene3D G3DSA:1.10.8.60 329 405 1.5E-29 T 11-10-2018 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 SMART SM00382 190 329 1.5E-25 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 Pfam PF01434 Peptidase family M41 388 596 3.8E-80 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 Gene3D G3DSA:1.20.58.760 408 605 2.2E-73 T 11-10-2018 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 603 37.317 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 Gene3D G3DSA:3.40.50.300 143 328 7.1E-70 T 11-10-2018 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 Pfam PF06480 FtsH Extracellular 10 79 4.4E-6 T 11-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 106 597 2.4E-239 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 APT56_21885 f4b2aaa52118f17622ee1bd2f11e994f 632 SUPERFAMILY SSF52540 150 397 1.07E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 SMART SM00382 38 243 3.4E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 SMART SM00382 352 544 1.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 544 593 3.1E-10 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 SUPERFAMILY SSF52540 9 265 5.9E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 SUPERFAMILY SSF52540 317 566 5.11E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 Gene3D G3DSA:3.40.50.300 7 310 5.6E-83 T 11-10-2018 APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 Gene3D G3DSA:3.40.50.300 314 617 1.4E-85 T 11-10-2018 APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 546 578 5.7E-9 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 275 7.0E-7 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 Pfam PF00005 ABC transporter 344 493 1.1E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_11740 48d7b0baaa92882fe945bfdf6ef57904 622 Pfam PF00005 ABC transporter 30 193 6.3E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15060 87e15b70cc4284d9602a4bb7d010b164 398 Pfam PF07055 Enoyl reductase FAD binding domain 323 386 8.1E-29 T 11-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_15060 87e15b70cc4284d9602a4bb7d010b164 398 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 316 1.9E-105 T 11-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_15060 87e15b70cc4284d9602a4bb7d010b164 398 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 392 53.477 T 11-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_15060 87e15b70cc4284d9602a4bb7d010b164 398 Gene3D G3DSA:3.40.50.720 1 398 9.6E-179 T 11-10-2018 APT56_15060 87e15b70cc4284d9602a4bb7d010b164 398 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 79 3.4E-37 T 11-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 SUPERFAMILY SSF81442 27 534 9.68E-196 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 147 159 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 205 224 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 256 277 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 389 408 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 326 347 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 30 55 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 77 100 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 104 128 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 194 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 302 317 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 361 379 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 PRINTS PR01165 Cytochrome c oxidase subunit I signature 439 460 7.1E-122 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 Gene3D G3DSA:1.20.210.10 18 535 6.9E-224 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 39 480 4.8E-156 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 31 534 4.6E-218 T 11-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 APT56_01400 0873b08f2bd3efe068b9a3b1e28bf68b 535 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 258 312 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_15470 15f39ef6c66390e47feb3123c9787088 261 SUPERFAMILY SSF46689 13 88 6.8E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_15470 15f39ef6c66390e47feb3123c9787088 261 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 7.9E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_15470 15f39ef6c66390e47feb3123c9787088 261 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 7.9E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_15470 15f39ef6c66390e47feb3123c9787088 261 SUPERFAMILY SSF48498 105 224 1.21E-13 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_15470 15f39ef6c66390e47feb3123c9787088 261 Gene3D G3DSA:1.10.357.10 13 231 1.6E-60 T 11-10-2018 APT56_15470 15f39ef6c66390e47feb3123c9787088 261 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 72 5.8E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 SUPERFAMILY SSF51569 7 336 6.15E-143 T 11-10-2018 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 SMART SM01004 10 334 3.3E-237 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 Gene3D G3DSA:3.20.20.70 3 338 1.2E-143 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 332 6.0E-137 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 11-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 PIRSF PIRSF001415 4 337 6.7E-146 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 308 327 2.8E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 2.8E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 2.8E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 2.8E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 2.8E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_27635 2faacf6f2aa231f9a7244646355ad688 338 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 2.8E-57 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APT56_11315 a404c8ace8f6b4f912fd36e7f0ea9c8c 187 SUPERFAMILY SSF117856 35 182 1.73E-22 T 11-10-2018 APT56_11315 a404c8ace8f6b4f912fd36e7f0ea9c8c 187 Gene3D G3DSA:3.30.1330.80 34 186 1.6E-13 T 11-10-2018 APT56_04140 067d33fc8015bada5987fe00195279a5 503 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 369 484 3.7E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_04140 067d33fc8015bada5987fe00195279a5 503 SMART SM00387 369 486 2.7E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_04140 067d33fc8015bada5987fe00195279a5 503 SUPERFAMILY SSF47384 236 316 5.89E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_04140 067d33fc8015bada5987fe00195279a5 503 Pfam PF00512 His Kinase A (phospho-acceptor) domain 254 315 1.5E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_04140 067d33fc8015bada5987fe00195279a5 503 SUPERFAMILY SSF55874 316 484 1.31E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_04140 067d33fc8015bada5987fe00195279a5 503 Gene3D G3DSA:3.30.565.10 323 489 3.8E-25 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_04140 067d33fc8015bada5987fe00195279a5 503 Pfam PF08521 Two-component sensor kinase N-terminal 19 172 4.3E-33 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal APT56_04140 067d33fc8015bada5987fe00195279a5 503 SMART SM00388 253 318 7.4E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_04140 067d33fc8015bada5987fe00195279a5 503 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 483 2.2E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_04140 067d33fc8015bada5987fe00195279a5 503 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 459 2.2E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_04140 067d33fc8015bada5987fe00195279a5 503 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 420 2.2E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_04140 067d33fc8015bada5987fe00195279a5 503 Gene3D G3DSA:1.10.287.130 204 319 3.9E-17 T 11-10-2018 APT56_00240 05b5202d1648849905e1d9a6fc9d8136 348 ProSitePatterns PS00211 ABC transporters family signature. 181 195 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00240 05b5202d1648849905e1d9a6fc9d8136 348 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 260 324 6.8E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_00240 05b5202d1648849905e1d9a6fc9d8136 348 SUPERFAMILY SSF52540 66 333 3.8E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00240 05b5202d1648849905e1d9a6fc9d8136 348 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 258 344 2.5E-26 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_00240 05b5202d1648849905e1d9a6fc9d8136 348 Gene3D G3DSA:3.40.50.300 47 348 6.7E-96 T 11-10-2018 APT56_00240 05b5202d1648849905e1d9a6fc9d8136 348 Pfam PF00005 ABC transporter 59 208 9.0E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00240 05b5202d1648849905e1d9a6fc9d8136 348 SMART SM00382 66 266 1.8E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01545 39327d025b722a2daa355d5759de5503 378 SUPERFAMILY SSF142754 42 351 8.76E-104 T 11-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 APT56_01545 39327d025b722a2daa355d5759de5503 378 Pfam PF02445 Quinolinate synthetase A protein 44 350 1.5E-100 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 APT56_01545 39327d025b722a2daa355d5759de5503 378 Gene3D G3DSA:3.40.50.10800 127 350 2.1E-92 T 11-10-2018 APT56_01545 39327d025b722a2daa355d5759de5503 378 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 42 351 1.5E-104 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 APT56_01545 39327d025b722a2daa355d5759de5503 378 Gene3D G3DSA:3.40.50.10800 212 307 2.1E-92 T 11-10-2018 APT56_01545 39327d025b722a2daa355d5759de5503 378 Gene3D G3DSA:3.40.50.10800 43 332 2.1E-92 T 11-10-2018 APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 SUPERFAMILY SSF51735 3 247 1.93E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 Gene3D G3DSA:3.40.50.720 2 254 6.2E-57 T 11-10-2018 APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 2.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 2.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 2.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.7E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 2.7E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 2.7E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 2.7E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 2.7E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 Pfam PF00106 short chain dehydrogenase 4 189 7.6E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_21945 88ed6c6fe447526ab362cec3446a8adc 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 180 0.0017 T 11-10-2018 APT56_04315 e6abdaa1c212917919c751fef9c39a18 575 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 16 563 41.907 T 11-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_04315 e6abdaa1c212917919c751fef9c39a18 575 Gene3D G3DSA:3.30.450.330 228 551 2.5E-105 T 11-10-2018 APT56_04315 e6abdaa1c212917919c751fef9c39a18 575 Gene3D G3DSA:3.40.710.10 288 470 2.5E-105 T 11-10-2018 APT56_04315 e6abdaa1c212917919c751fef9c39a18 575 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 212 1.4E-22 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 APT56_04315 e6abdaa1c212917919c751fef9c39a18 575 Gene3D G3DSA:3.90.1310.30 57 227 2.9E-46 T 11-10-2018 APT56_04315 e6abdaa1c212917919c751fef9c39a18 575 SUPERFAMILY SSF56601 178 561 5.99E-83 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_04315 e6abdaa1c212917919c751fef9c39a18 575 Pfam PF00905 Penicillin binding protein transpeptidase domain 253 547 4.9E-67 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT56_04315 e6abdaa1c212917919c751fef9c39a18 575 SUPERFAMILY SSF56519 60 226 1.31E-45 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 Pfam PF03466 LysR substrate binding domain 91 287 6.3E-29 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 4.8E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 Gene3D G3DSA:1.10.10.10 5 91 5.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 SUPERFAMILY SSF53850 92 290 2.36E-30 T 11-10-2018 APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 Gene3D G3DSA:3.40.190.290 92 289 8.9E-31 T 11-10-2018 APT56_11205 cf7e1d9417e14f1275cd46948ad07d66 291 SUPERFAMILY SSF46785 6 113 1.82E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00705 3b3c2a8cf56d42223abe579fb07bf801 551 Pfam PF02384 N-6 DNA Methylase 59 305 4.7E-16 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 APT56_00705 3b3c2a8cf56d42223abe579fb07bf801 551 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 91 105 3.6E-16 T 11-10-2018 APT56_00705 3b3c2a8cf56d42223abe579fb07bf801 551 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 195 3.6E-16 T 11-10-2018 APT56_00705 3b3c2a8cf56d42223abe579fb07bf801 551 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 216 240 3.6E-16 T 11-10-2018 APT56_00705 3b3c2a8cf56d42223abe579fb07bf801 551 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 63 79 3.6E-16 T 11-10-2018 APT56_00705 3b3c2a8cf56d42223abe579fb07bf801 551 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 186 192 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APT56_00705 3b3c2a8cf56d42223abe579fb07bf801 551 SUPERFAMILY SSF53335 26 297 4.87E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_00705 3b3c2a8cf56d42223abe579fb07bf801 551 Gene3D G3DSA:3.40.50.150 45 316 2.2E-37 T 11-10-2018 APT56_12525 ce7cc292bbb21dae739d02792c368d12 164 Pfam PF00255 Glutathione peroxidase 4 111 3.7E-43 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT56_12525 ce7cc292bbb21dae739d02792c368d12 164 Gene3D G3DSA:3.40.30.10 1 163 1.3E-69 T 11-10-2018 APT56_12525 ce7cc292bbb21dae739d02792c368d12 164 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 11-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 APT56_12525 ce7cc292bbb21dae739d02792c368d12 164 SUPERFAMILY SSF52833 3 159 1.41E-61 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_12525 ce7cc292bbb21dae739d02792c368d12 164 PRINTS PR01011 Glutathione peroxidase family signature 22 39 3.7E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT56_12525 ce7cc292bbb21dae739d02792c368d12 164 PRINTS PR01011 Glutathione peroxidase family signature 57 73 3.7E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT56_12525 ce7cc292bbb21dae739d02792c368d12 164 PRINTS PR01011 Glutathione peroxidase family signature 123 132 3.7E-21 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT56_12525 ce7cc292bbb21dae739d02792c368d12 164 PIRSF PIRSF000303 1 163 2.6E-65 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 APT56_13515 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 TIGRFAM TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase 4 301 2.7E-135 T 11-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 APT56_13515 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 PIRSF PIRSF001365 7 304 1.4E-59 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13515 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 Gene3D G3DSA:3.20.20.70 2 302 4.6E-98 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_13515 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 SUPERFAMILY SSF51569 13 302 6.8E-69 T 11-10-2018 APT56_13515 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 11 302 44.701 T 11-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 APT56_13515 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 SMART SM01130 11 302 3.3E-78 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13515 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 Pfam PF00701 Dihydrodipicolinate synthetase family 13 299 5.0E-54 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13505 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 TIGRFAM TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase 4 301 2.7E-135 T 11-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 APT56_13505 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 PIRSF PIRSF001365 7 304 1.4E-59 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13505 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 Gene3D G3DSA:3.20.20.70 2 302 4.6E-98 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_13505 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 SUPERFAMILY SSF51569 13 302 6.8E-69 T 11-10-2018 APT56_13505 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 11 302 44.701 T 11-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 APT56_13505 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 SMART SM01130 11 302 3.3E-78 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_13505 4f2b9df9862dd6e17f4fdfa3981d0b7b 304 Pfam PF00701 Dihydrodipicolinate synthetase family 13 299 5.0E-54 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 4 172 2.7E-36 T 11-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 Gene3D G3DSA:2.40.240.10 1 94 3.3E-30 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 Pfam PF01386 Ribosomal L25p family 4 91 1.9E-23 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 Gene3D G3DSA:2.170.120.20 96 190 1.1E-19 T 11-10-2018 IPR037121 Ribosomal protein L25, C-terminal APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 1 185 29.272 T 11-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 1 94 1.0E-36 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 1 94 23.085 T 11-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 100 174 2.2E-22 T 11-10-2018 IPR020057 Ribosomal protein L25, beta domain APT56_24490 d0890b6e02e2de2b00f2929b14a49958 204 SUPERFAMILY SSF50715 1 190 1.1E-49 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Pfam PF02368 Bacterial Ig-like domain (group 2) 80 117 1.7E-7 T 11-10-2018 IPR003343 Bacterial Ig-like, group 2 APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 969 1061 2.1E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 141 230 2.6E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 SUPERFAMILY SSF49313 605 685 1.13E-7 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 690 769 1.3E-8 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Pfam PF05345 Putative Ig domain 452 485 8.6E-7 T 11-10-2018 IPR008009 Putative Ig APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Pfam PF05345 Putative Ig domain 270 303 1.6E-7 T 11-10-2018 IPR008009 Putative Ig APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Pfam PF05345 Putative Ig domain 636 670 4.9E-9 T 11-10-2018 IPR008009 Putative Ig APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Pfam PF05345 Putative Ig domain 913 953 1.9E-6 T 11-10-2018 IPR008009 Putative Ig APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Pfam PF05345 Putative Ig domain 542 576 6.8E-8 T 11-10-2018 IPR008009 Putative Ig APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Pfam PF05345 Putative Ig domain 361 396 2.7E-7 T 11-10-2018 IPR008009 Putative Ig APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 SUPERFAMILY SSF49313 904 969 2.43E-7 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 326 414 3.0E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 417 505 9.9E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 508 596 1.5E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 601 686 5.6E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 887 968 6.6E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.10 236 323 6.4E-11 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 SUPERFAMILY SSF49313 514 592 2.98E-5 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 SUPERFAMILY SSF49373 81 122 2.2E-7 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 SUPERFAMILY SSF49313 333 413 5.65E-5 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 Gene3D G3DSA:2.60.40.1080 70 126 1.6E-7 T 11-10-2018 APT56_02480 4548774807a4a6f9c5c793e46658a1a5 1180 SUPERFAMILY SSF49313 241 322 1.1E-5 T 11-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 Gene3D G3DSA:1.10.287.130 162 277 2.4E-23 T 11-10-2018 APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 SMART SM00387 322 433 2.4E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 Gene3D G3DSA:3.30.565.10 281 431 2.1E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 SUPERFAMILY SSF55874 266 429 3.24E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 SMART SM00304 158 210 2.0E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 428 3.0E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 Pfam PF00512 His Kinase A (phospho-acceptor) domain 213 275 4.9E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 2.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 386 2.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 2.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 SUPERFAMILY SSF47384 196 275 1.55E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_14225 29e251d34ce4b27e5655d4ad9443e1ab 437 SMART SM00388 211 276 5.7E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_23900 52192b196169974c8a07ad6575b85fda 289 SUPERFAMILY SSF53448 3 217 1.1E-12 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_23900 52192b196169974c8a07ad6575b85fda 289 Gene3D G3DSA:3.90.550.10 45 161 1.6E-6 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_07385 031aec3fca97e25af4d4794e06dc7da1 290 SUPERFAMILY SSF54506 3 288 8.37E-67 T 11-10-2018 APT56_07385 031aec3fca97e25af4d4794e06dc7da1 290 PIRSF PIRSF016184 1 290 6.7E-66 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_07385 031aec3fca97e25af4d4794e06dc7da1 290 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 283 2.4E-54 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_07385 031aec3fca97e25af4d4794e06dc7da1 290 Pfam PF02567 Phenazine biosynthesis-like protein 10 281 2.1E-49 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_07385 031aec3fca97e25af4d4794e06dc7da1 290 Gene3D G3DSA:3.10.310.10 115 277 1.5E-69 T 11-10-2018 APT56_07385 031aec3fca97e25af4d4794e06dc7da1 290 Gene3D G3DSA:3.10.310.10 9 279 1.5E-69 T 11-10-2018 APT56_13470 c73d78c030fc98f79ad32fd00d088f47 777 Gene3D G3DSA:2.170.130.10 49 176 1.7E-36 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_13470 c73d78c030fc98f79ad32fd00d088f47 777 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 760 777 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_13470 c73d78c030fc98f79ad32fd00d088f47 777 SUPERFAMILY SSF56935 31 777 8.7E-115 T 11-10-2018 APT56_13470 c73d78c030fc98f79ad32fd00d088f47 777 Pfam PF07715 TonB-dependent Receptor Plug Domain 67 165 2.1E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_13470 c73d78c030fc98f79ad32fd00d088f47 777 Pfam PF00593 TonB dependent receptor 253 775 7.4E-51 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_13470 c73d78c030fc98f79ad32fd00d088f47 777 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 68 777 7.5E-80 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_13100 32a458d9c7f11784f9f232aae79ac8b7 319 Gene3D G3DSA:1.10.10.10 3 88 2.8E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13100 32a458d9c7f11784f9f232aae79ac8b7 319 Gene3D G3DSA:3.40.190.10 163 267 4.4E-63 T 11-10-2018 APT56_13100 32a458d9c7f11784f9f232aae79ac8b7 319 Pfam PF03466 LysR substrate binding domain 89 296 2.6E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_13100 32a458d9c7f11784f9f232aae79ac8b7 319 SUPERFAMILY SSF46785 4 111 1.01E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13100 32a458d9c7f11784f9f232aae79ac8b7 319 Gene3D G3DSA:3.40.190.10 91 294 4.4E-63 T 11-10-2018 APT56_13100 32a458d9c7f11784f9f232aae79ac8b7 319 SUPERFAMILY SSF53850 90 299 1.99E-42 T 11-10-2018 APT56_13100 32a458d9c7f11784f9f232aae79ac8b7 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 6.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02010 828f0e905e7b70bae683965883ccbd55 509 Pfam PF00171 Aldehyde dehydrogenase family 30 496 2.0E-163 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_02010 828f0e905e7b70bae683965883ccbd55 509 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_02010 828f0e905e7b70bae683965883ccbd55 509 SUPERFAMILY SSF53720 17 501 1.57E-161 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_02010 828f0e905e7b70bae683965883ccbd55 509 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 297 308 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_02010 828f0e905e7b70bae683965883ccbd55 509 Gene3D G3DSA:3.40.309.10 269 467 3.8E-162 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_02010 828f0e905e7b70bae683965883ccbd55 509 Gene3D G3DSA:3.40.605.10 26 495 3.8E-162 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_19085 9d1564a722e2760911c49d30daa61501 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 4.7E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19085 9d1564a722e2760911c49d30daa61501 212 SMART SM00421 147 204 1.7E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19085 9d1564a722e2760911c49d30daa61501 212 SMART SM00448 3 116 3.5E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_19085 9d1564a722e2760911c49d30daa61501 212 SUPERFAMILY SSF46894 135 209 1.29E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_19085 9d1564a722e2760911c49d30daa61501 212 Gene3D G3DSA:3.40.50.12740 3 209 6.4E-55 T 11-10-2018 APT56_19085 9d1564a722e2760911c49d30daa61501 212 Pfam PF00072 Response regulator receiver domain 6 116 4.4E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_19085 9d1564a722e2760911c49d30daa61501 212 SUPERFAMILY SSF52172 1 133 5.83E-31 T 11-10-2018 IPR011006 CheY-like superfamily APT56_19085 9d1564a722e2760911c49d30daa61501 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 3.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19085 9d1564a722e2760911c49d30daa61501 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 3.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19085 9d1564a722e2760911c49d30daa61501 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 3.2E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19085 9d1564a722e2760911c49d30daa61501 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_03955 a64d690fd9cfd019d919bc954eb4b642 162 Pfam PF04138 GtrA-like protein 42 156 4.3E-15 T 11-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 APT56_25165 734ca6df04623caaf79acb1214849d1e 190 Gene3D G3DSA:3.40.630.30 12 187 3.4E-47 T 11-10-2018 APT56_25165 734ca6df04623caaf79acb1214849d1e 190 Pfam PF13302 Acetyltransferase (GNAT) domain 16 161 4.2E-22 T 11-10-2018 IPR000182 GNAT domain APT56_25165 734ca6df04623caaf79acb1214849d1e 190 SUPERFAMILY SSF55729 11 185 5.22E-43 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_10005 b54efe164e8566c46a00208727c93bee 112 PRINTS PR00340 P-II protein signature 52 75 5.8E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_10005 b54efe164e8566c46a00208727c93bee 112 PRINTS PR00340 P-II protein signature 2 17 5.8E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_10005 b54efe164e8566c46a00208727c93bee 112 PRINTS PR00340 P-II protein signature 83 103 5.8E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_10005 b54efe164e8566c46a00208727c93bee 112 PRINTS PR00340 P-II protein signature 23 41 5.8E-42 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_10005 b54efe164e8566c46a00208727c93bee 112 SUPERFAMILY SSF54913 1 112 1.43E-43 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta APT56_10005 b54efe164e8566c46a00208727c93bee 112 PIRSF PIRSF039144 1 112 1.7E-52 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_10005 b54efe164e8566c46a00208727c93bee 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.6E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_10005 b54efe164e8566c46a00208727c93bee 112 Gene3D G3DSA:3.30.70.120 1 112 1.2E-44 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal APT56_10005 b54efe164e8566c46a00208727c93bee 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 APT56_10005 b54efe164e8566c46a00208727c93bee 112 SMART SM00938 4 105 1.9E-63 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APT56_20595 37938a7b41442a1740b2449260856598 253 SUPERFAMILY SSF49584 160 246 1.96E-15 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily APT56_20595 37938a7b41442a1740b2449260856598 253 PRINTS PR00969 Pili chaperone signature 168 183 2.2E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 APT56_20595 37938a7b41442a1740b2449260856598 253 PRINTS PR00969 Pili chaperone signature 107 124 2.2E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 APT56_20595 37938a7b41442a1740b2449260856598 253 PRINTS PR00969 Pili chaperone signature 132 147 2.2E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 APT56_20595 37938a7b41442a1740b2449260856598 253 PRINTS PR00969 Pili chaperone signature 75 96 2.2E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 APT56_20595 37938a7b41442a1740b2449260856598 253 PRINTS PR00969 Pili chaperone signature 30 39 2.2E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 APT56_20595 37938a7b41442a1740b2449260856598 253 SUPERFAMILY SSF49354 30 150 2.12E-34 T 11-10-2018 IPR008962 PapD-like superfamily APT56_20595 37938a7b41442a1740b2449260856598 253 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 106 123 - T 11-10-2018 IPR018046 Pili assembly chaperone, conserved site APT56_20595 37938a7b41442a1740b2449260856598 253 Gene3D G3DSA:2.60.40.10 153 246 4.4E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_20595 37938a7b41442a1740b2449260856598 253 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 174 233 8.5E-9 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal APT56_20595 37938a7b41442a1740b2449260856598 253 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 150 1.0E-35 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 APT56_20595 37938a7b41442a1740b2449260856598 253 Gene3D G3DSA:2.60.40.10 29 151 4.3E-35 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 Gene3D G3DSA:2.30.33.40 1 95 1.4E-39 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 SMART SM00883 2 94 8.7E-55 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 PRINTS PR00297 10kDa chaperonin signature 60 72 4.4E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 PRINTS PR00297 10kDa chaperonin signature 81 94 4.4E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 PRINTS PR00297 10kDa chaperonin signature 3 18 4.4E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 PRINTS PR00297 10kDa chaperonin signature 25 46 4.4E-33 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 SUPERFAMILY SSF50129 1 94 1.55E-34 T 11-10-2018 IPR011032 GroES-like superfamily APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 26.88 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 1.1E-35 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APT56_24260 bd9c4af1d1abfc5c68179aaaffeafe3b 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 APT56_23400 f79510174a0d3c288008fb35ea253e3b 156 Gene3D G3DSA:1.10.10.10 15 146 2.1E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23400 f79510174a0d3c288008fb35ea253e3b 156 SMART SM00347 34 134 4.8E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_23400 f79510174a0d3c288008fb35ea253e3b 156 Pfam PF13463 Winged helix DNA-binding domain 45 107 1.8E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_23400 f79510174a0d3c288008fb35ea253e3b 156 SUPERFAMILY SSF46785 13 144 1.42E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12985 4996e9be9e3a6b2b1d9cc8d90cafda85 248 Gene3D G3DSA:3.40.50.1820 8 247 2.9E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_12985 4996e9be9e3a6b2b1d9cc8d90cafda85 248 SUPERFAMILY SSF53474 9 245 1.17E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_12985 4996e9be9e3a6b2b1d9cc8d90cafda85 248 Pfam PF12697 Alpha/beta hydrolase family 14 241 9.8E-14 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_16685 acf283c94c86c087740750399bdd5772 324 Gene3D G3DSA:3.90.180.10 8 314 4.0E-100 T 11-10-2018 APT56_16685 acf283c94c86c087740750399bdd5772 324 SUPERFAMILY SSF51735 116 285 1.2E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_16685 acf283c94c86c087740750399bdd5772 324 Gene3D G3DSA:3.40.50.720 124 284 4.0E-100 T 11-10-2018 APT56_16685 acf283c94c86c087740750399bdd5772 324 Pfam PF13602 Zinc-binding dehydrogenase 186 315 1.1E-26 T 11-10-2018 APT56_16685 acf283c94c86c087740750399bdd5772 324 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 144 165 - T 11-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 APT56_16685 acf283c94c86c087740750399bdd5772 324 SUPERFAMILY SSF50129 1 149 3.2E-41 T 11-10-2018 IPR011032 GroES-like superfamily APT56_16685 acf283c94c86c087740750399bdd5772 324 SMART SM00829 10 316 2.0E-42 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_16685 acf283c94c86c087740750399bdd5772 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 100 1.6E-12 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 SUPERFAMILY SSF52833 5 239 3.29E-45 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 Gene3D G3DSA:3.40.30.10 171 242 6.2E-19 T 11-10-2018 APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 Pfam PF00462 Glutaredoxin 173 231 1.7E-13 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 PRINTS PR00160 Glutaredoxin signature 228 241 3.7E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 PRINTS PR00160 Glutaredoxin signature 214 227 3.7E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 PRINTS PR00160 Glutaredoxin signature 173 191 3.7E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 Gene3D G3DSA:3.40.30.10 4 165 6.0E-64 T 11-10-2018 APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 Pfam PF08534 Redoxin 6 160 2.8E-34 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APT56_15125 0083c5a1f7dcacd980971766d33477a6 242 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 242 3.3E-37 T 11-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 APT56_25115 688124ee3b28327cbed0a12b238ae7b0 236 SUPERFAMILY SSF46785 15 109 1.0E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25115 688124ee3b28327cbed0a12b238ae7b0 236 SMART SM00345 22 80 6.9E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_25115 688124ee3b28327cbed0a12b238ae7b0 236 SUPERFAMILY SSF48008 85 220 3.66E-29 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_25115 688124ee3b28327cbed0a12b238ae7b0 236 Pfam PF07729 FCD domain 90 216 2.3E-29 T 11-10-2018 IPR011711 GntR, C-terminal APT56_25115 688124ee3b28327cbed0a12b238ae7b0 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 4.1E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_25115 688124ee3b28327cbed0a12b238ae7b0 236 Gene3D G3DSA:1.20.120.530 83 225 1.9E-34 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_25115 688124ee3b28327cbed0a12b238ae7b0 236 Gene3D G3DSA:1.10.10.10 5 80 2.7E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25115 688124ee3b28327cbed0a12b238ae7b0 236 SMART SM00895 90 217 3.8E-26 T 11-10-2018 IPR011711 GntR, C-terminal APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 Pfam PF05193 Peptidase M16 inactive domain 208 382 4.6E-28 T 11-10-2018 IPR007863 Peptidase M16, C-terminal APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 Pfam PF05193 Peptidase M16 inactive domain 666 844 4.9E-25 T 11-10-2018 IPR007863 Peptidase M16, C-terminal APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 Gene3D G3DSA:3.30.830.10 260 467 2.6E-51 T 11-10-2018 APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 74 97 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 Gene3D G3DSA:3.30.830.10 727 916 7.6E-39 T 11-10-2018 APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 Gene3D G3DSA:3.30.830.10 498 712 1.9E-24 T 11-10-2018 APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 SUPERFAMILY SSF63411 269 452 4.62E-26 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 SUPERFAMILY SSF63411 479 716 4.5E-27 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 Gene3D G3DSA:3.30.830.10 38 259 2.4E-61 T 11-10-2018 APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 SUPERFAMILY SSF63411 42 259 5.0E-52 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 Pfam PF00675 Insulinase (Peptidase family M16) 53 199 1.6E-20 T 11-10-2018 IPR011765 Peptidase M16, N-terminal APT56_05610 4669b4edf1a3a6d16982ed10d7ef6892 917 SUPERFAMILY SSF63411 741 914 6.54E-30 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APT56_08150 fbf9cb2d90569fbbfd529d23797ed15c 479 SUPERFAMILY SSF46785 2 73 2.18E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08150 fbf9cb2d90569fbbfd529d23797ed15c 479 Gene3D G3DSA:3.40.640.10 149 368 3.4E-96 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_08150 fbf9cb2d90569fbbfd529d23797ed15c 479 SMART SM00345 10 69 6.8E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_08150 fbf9cb2d90569fbbfd529d23797ed15c 479 SUPERFAMILY SSF53383 116 476 5.38E-89 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_08150 fbf9cb2d90569fbbfd529d23797ed15c 479 Gene3D G3DSA:1.10.10.10 2 71 8.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08150 fbf9cb2d90569fbbfd529d23797ed15c 479 Gene3D G3DSA:3.90.1150.10 108 473 3.4E-96 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_08150 fbf9cb2d90569fbbfd529d23797ed15c 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 69 1.2E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_08150 fbf9cb2d90569fbbfd529d23797ed15c 479 Pfam PF00155 Aminotransferase class I and II 127 465 1.1E-27 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 Gene3D G3DSA:1.10.390.10 187 353 9.4E-65 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 SUPERFAMILY SSF55486 74 352 6.96E-80 T 11-10-2018 APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 137 157 4.4E-27 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 173 189 4.4E-27 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 194 205 4.4E-27 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 275 291 4.4E-27 T 11-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 76 181 1.2E-28 T 11-10-2018 IPR013856 Peptidase M4 domain GO:0004222 APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 Gene3D G3DSA:3.10.170.10 7 186 7.2E-64 T 11-10-2018 APT56_23570 a9ff8b3bd0ea9aaf03ffd21d5060be57 354 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 185 352 6.0E-48 T 11-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 Gene3D G3DSA:3.40.50.720 1 256 3.9E-77 T 11-10-2018 APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 252 7.9E-59 T 11-10-2018 APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 SUPERFAMILY SSF51735 6 252 3.06E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.6E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.6E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.6E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25145 28d1fa26f19e8d1ff9ff6cc40c4d1492 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 Gene3D G3DSA:2.40.110.10 131 242 7.6E-47 T 11-10-2018 APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 134 146 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 128 2.0E-11 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 Gene3D G3DSA:1.20.140.10 243 389 6.0E-44 T 11-10-2018 APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 237 386 8.3E-44 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 SUPERFAMILY SSF47203 235 388 6.12E-48 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 225 6.5E-23 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 SUPERFAMILY SSF56645 11 248 6.54E-63 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_03075 0109cee5ef7046f800443ae49ec7fe6f 389 Gene3D G3DSA:1.10.540.10 8 130 7.9E-25 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_20155 c46943176a2a564287d8b0aca25f7898 153 SUPERFAMILY SSF55729 4 147 1.89E-33 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_20155 c46943176a2a564287d8b0aca25f7898 153 Gene3D G3DSA:3.40.630.30 5 144 8.2E-37 T 11-10-2018 APT56_20155 c46943176a2a564287d8b0aca25f7898 153 Pfam PF00583 Acetyltransferase (GNAT) family 46 138 9.1E-14 T 11-10-2018 IPR000182 GNAT domain APT56_21355 4686a6207e19ea8cf2c936d47c768cce 414 SUPERFAMILY SSF89796 8 400 1.26E-116 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_21355 4686a6207e19ea8cf2c936d47c768cce 414 Gene3D G3DSA:3.30.1540.10 236 329 4.2E-110 T 11-10-2018 APT56_21355 4686a6207e19ea8cf2c936d47c768cce 414 Gene3D G3DSA:3.40.50.10540 12 394 4.2E-110 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_21355 4686a6207e19ea8cf2c936d47c768cce 414 Pfam PF02515 CoA-transferase family III 12 377 2.2E-105 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_04995 f95c1dc6b9b902c4930b9a73ac0fce8f 368 Pfam PF13533 Biotin-lipoyl like 11 53 5.9E-10 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_04995 f95c1dc6b9b902c4930b9a73ac0fce8f 368 Gene3D G3DSA:2.40.30.170 2 303 1.9E-36 T 11-10-2018 APT56_04995 f95c1dc6b9b902c4930b9a73ac0fce8f 368 Pfam PF13437 HlyD family secretion protein 172 282 1.5E-8 T 11-10-2018 APT56_04995 f95c1dc6b9b902c4930b9a73ac0fce8f 368 Gene3D G3DSA:1.10.287.470 43 171 1.9E-36 T 11-10-2018 APT56_04995 f95c1dc6b9b902c4930b9a73ac0fce8f 368 Gene3D G3DSA:2.40.50.100 9 219 1.9E-36 T 11-10-2018 APT56_04995 f95c1dc6b9b902c4930b9a73ac0fce8f 368 SUPERFAMILY SSF111369 2 93 9.55E-6 T 11-10-2018 APT56_04995 f95c1dc6b9b902c4930b9a73ac0fce8f 368 Gene3D G3DSA:2.40.420.20 304 358 1.9E-36 T 11-10-2018 APT56_18865 c4667983ed83f6fc310e6d969e510393 398 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 393 6.1E-138 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_18865 c4667983ed83f6fc310e6d969e510393 398 SUPERFAMILY SSF53383 29 395 2.96E-119 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_18865 c4667983ed83f6fc310e6d969e510393 398 Gene3D G3DSA:3.40.640.10 7 261 6.4E-95 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_18865 c4667983ed83f6fc310e6d969e510393 398 Gene3D G3DSA:3.90.1150.10 262 398 2.3E-49 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_18865 c4667983ed83f6fc310e6d969e510393 398 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_18865 c4667983ed83f6fc310e6d969e510393 398 PIRSF PIRSF001434 1 397 4.7E-144 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_17675 0a469ac766d5fddab177559e45c6278f 170 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 4 170 21.011 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_17675 0a469ac766d5fddab177559e45c6278f 170 SUPERFAMILY SSF46565 5 75 6.41E-17 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APT56_17675 0a469ac766d5fddab177559e45c6278f 170 SMART SM00271 4 69 1.4E-5 T 11-10-2018 IPR001623 DnaJ domain APT56_17675 0a469ac766d5fddab177559e45c6278f 170 Gene3D G3DSA:1.10.287.110 5 82 2.7E-21 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APT56_17675 0a469ac766d5fddab177559e45c6278f 170 Gene3D G3DSA:1.20.1280.20 83 169 7.8E-18 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_17675 0a469ac766d5fddab177559e45c6278f 170 SUPERFAMILY SSF47144 80 168 5.23E-18 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_17675 0a469ac766d5fddab177559e45c6278f 170 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 16 167 1.3E-27 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_17675 0a469ac766d5fddab177559e45c6278f 170 Pfam PF07743 HSCB C-terminal oligomerisation domain 90 163 1.0E-13 T 11-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_23555 ca4b1d2355a8bb7c8eb12a5c928d30e3 297 SMART SM00244 36 199 2.9E-4 T 11-10-2018 IPR001107 Band 7 domain APT56_23555 ca4b1d2355a8bb7c8eb12a5c928d30e3 297 Gene3D G3DSA:3.30.479.30 64 202 2.0E-9 T 11-10-2018 APT56_23555 ca4b1d2355a8bb7c8eb12a5c928d30e3 297 Pfam PF01145 SPFH domain / Band 7 family 40 213 2.7E-31 T 11-10-2018 IPR001107 Band 7 domain APT56_23555 ca4b1d2355a8bb7c8eb12a5c928d30e3 297 SUPERFAMILY SSF117892 68 204 3.01E-13 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily APT56_04760 488a44ba4d8e7da830376050bd25ffda 325 Gene3D G3DSA:3.40.190.150 29 315 6.2E-103 T 11-10-2018 APT56_04760 488a44ba4d8e7da830376050bd25ffda 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 321 2.3E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04760 488a44ba4d8e7da830376050bd25ffda 325 SUPERFAMILY SSF53850 112 286 1.45E-10 T 11-10-2018 APT56_04760 488a44ba4d8e7da830376050bd25ffda 325 Gene3D G3DSA:3.40.190.10 127 250 6.2E-103 T 11-10-2018 APT56_04760 488a44ba4d8e7da830376050bd25ffda 325 PIRSF PIRSF017082 1 325 1.4E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18650 35f91f425caf0387aefda68128794d51 305 SUPERFAMILY SSF63829 39 299 1.74E-64 T 11-10-2018 APT56_18650 35f91f425caf0387aefda68128794d51 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 223 240 1.5E-8 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_18650 35f91f425caf0387aefda68128794d51 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 266 284 1.5E-8 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_18650 35f91f425caf0387aefda68128794d51 305 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 162 184 1.5E-8 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_18650 35f91f425caf0387aefda68128794d51 305 Gene3D G3DSA:2.120.10.30 38 303 1.3E-71 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_18650 35f91f425caf0387aefda68128794d51 305 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 45 282 4.5E-45 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region APT56_10260 ae4def19512d7fd63f0849b56cd6f2cd 149 Pfam PF16778 Phage tail assembly chaperone protein 76 144 6.4E-9 T 11-10-2018 IPR031893 Phage tail assembly chaperone protein APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Gene3D G3DSA:3.40.1010.10 214 332 5.4E-44 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Gene3D G3DSA:3.30.160.110 113 147 9.1E-17 T 11-10-2018 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 SUPERFAMILY SSF53790 215 458 6.67E-78 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 3.4E-16 T 11-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Gene3D G3DSA:3.30.950.10 333 469 3.8E-50 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 SUPERFAMILY SSF75615 114 209 2.09E-23 T 11-10-2018 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 297 330 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 SUPERFAMILY SSF51735 1 112 3.64E-24 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Gene3D G3DSA:3.40.50.720 1 111 6.2E-32 T 11-10-2018 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Pfam PF13241 Putative NAD(P)-binding 6 115 3.3E-25 T 11-10-2018 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 451 7.7E-90 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 PIRSF PIRSF036426 1 468 5.4E-193 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Hamap MF_01646 Siroheme synthase [cysG]. 1 461 49.204 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Pfam PF14824 Sirohaem biosynthesis protein central 124 145 1.1E-6 T 11-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 3.9E-70 T 11-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APT56_22690 6cd066fa97e12ee2933889b330afbfae 471 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 428 2.3E-51 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 APT56_16350 bb44770290e1734f72a3ddf1e04875d5 228 SUPERFAMILY SSF48008 78 209 1.94E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_16350 bb44770290e1734f72a3ddf1e04875d5 228 Gene3D G3DSA:1.20.120.530 77 211 3.4E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_16350 bb44770290e1734f72a3ddf1e04875d5 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 72 2.6E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_16350 bb44770290e1734f72a3ddf1e04875d5 228 SUPERFAMILY SSF46785 2 76 3.63E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16350 bb44770290e1734f72a3ddf1e04875d5 228 SMART SM00345 14 72 2.7E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_16350 bb44770290e1734f72a3ddf1e04875d5 228 Pfam PF07729 FCD domain 82 204 4.5E-25 T 11-10-2018 IPR011711 GntR, C-terminal APT56_16350 bb44770290e1734f72a3ddf1e04875d5 228 Gene3D G3DSA:1.10.10.10 10 73 2.5E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16350 bb44770290e1734f72a3ddf1e04875d5 228 SMART SM00895 82 205 5.7E-20 T 11-10-2018 IPR011711 GntR, C-terminal APT56_01675 8d83b3f5ca5f126044a1b764f5b2b6dc 509 Pfam PF00221 Aromatic amino acid lyase 10 470 4.0E-184 T 11-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 APT56_01675 8d83b3f5ca5f126044a1b764f5b2b6dc 509 SUPERFAMILY SSF48557 3 503 2.12E-189 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APT56_01675 8d83b3f5ca5f126044a1b764f5b2b6dc 509 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 503 44.122 T 11-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01675 8d83b3f5ca5f126044a1b764f5b2b6dc 509 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 11-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 APT56_01675 8d83b3f5ca5f126044a1b764f5b2b6dc 509 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 507 1.1E-218 T 11-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01675 8d83b3f5ca5f126044a1b764f5b2b6dc 509 Gene3D G3DSA:1.10.275.10 1 196 1.4E-68 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal APT56_01675 8d83b3f5ca5f126044a1b764f5b2b6dc 509 Gene3D G3DSA:1.20.200.10 197 508 1.5E-125 T 11-10-2018 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.1E-45 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 SUPERFAMILY SSF51246 331 443 1.52E-43 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 3.4E-222 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 Gene3D G3DSA:3.40.50.20 1 85 1.4E-34 T 11-10-2018 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 Gene3D G3DSA:3.30.470.20 87 433 1.1E-150 T 11-10-2018 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 321 4.5E-78 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 7.5E-39 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 SMART SM00878 336 441 9.7E-65 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 SUPERFAMILY SSF56059 83 347 7.78E-71 T 11-10-2018 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 Gene3D G3DSA:3.30.1490.20 131 203 1.1E-150 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_03300 d73fb181a209d17f3ecbbabc08e5a8bb 448 SUPERFAMILY SSF52440 1 113 2.66E-48 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_08860 e5505dc11a07dbf27329ccf941843946 318 PIRSF PIRSF017082 2 317 4.7E-69 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_08860 e5505dc11a07dbf27329ccf941843946 318 Gene3D G3DSA:3.40.190.10 120 243 2.5E-103 T 11-10-2018 APT56_08860 e5505dc11a07dbf27329ccf941843946 318 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 41 314 2.1E-74 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_08860 e5505dc11a07dbf27329ccf941843946 318 Gene3D G3DSA:3.40.190.150 24 308 2.5E-103 T 11-10-2018 APT56_08860 e5505dc11a07dbf27329ccf941843946 318 SUPERFAMILY SSF53850 108 284 1.01E-14 T 11-10-2018 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 Pfam PF00672 HAMP domain 190 242 4.3E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 3.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 3.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 3.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 3.4E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 SMART SM00387 352 464 1.1E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 SMART SM00388 246 309 7.7E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 Gene3D G3DSA:1.10.287.130 194 308 2.1E-26 T 11-10-2018 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 461 1.7E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 SUPERFAMILY SSF158472 190 244 2.88E-9 T 11-10-2018 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 SUPERFAMILY SSF55874 302 462 7.86E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 308 3.7E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 SUPERFAMILY SSF47384 229 307 9.42E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 Gene3D G3DSA:3.30.565.10 312 464 1.3E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_17530 3b491b6a6c8cb61b061f71ae5e7ba3e7 465 SMART SM00304 190 245 2.7E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_10410 7a498b289ba44a868136dd0045bb39a8 329 SUPERFAMILY SSF53850 116 291 4.61E-13 T 11-10-2018 APT56_10410 7a498b289ba44a868136dd0045bb39a8 329 PIRSF PIRSF017082 1 329 7.9E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_10410 7a498b289ba44a868136dd0045bb39a8 329 Gene3D G3DSA:3.40.190.10 131 254 1.8E-112 T 11-10-2018 APT56_10410 7a498b289ba44a868136dd0045bb39a8 329 Gene3D G3DSA:3.40.190.150 33 319 1.8E-112 T 11-10-2018 APT56_10410 7a498b289ba44a868136dd0045bb39a8 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 325 2.9E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20990 d95493f53197a0a1c33e68eb582c0665 230 SUPERFAMILY SSF161098 18 208 1.83E-39 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20990 d95493f53197a0a1c33e68eb582c0665 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 214 2.2E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_20990 d95493f53197a0a1c33e68eb582c0665 230 Gene3D G3DSA:1.10.3720.10 7 223 2.1E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20990 d95493f53197a0a1c33e68eb582c0665 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 18 116 3.6E-21 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_12310 ee8607fa84bbb7184fb815fecc09f446 202 Hamap MF_00052_B Ribonuclease HII [rnhB]. 16 195 34.202 T 11-10-2018 IPR022898 Ribonuclease HII GO:0004523 APT56_12310 ee8607fa84bbb7184fb815fecc09f446 202 Gene3D G3DSA:3.30.420.10 6 200 5.9E-68 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_12310 ee8607fa84bbb7184fb815fecc09f446 202 SUPERFAMILY SSF53098 12 197 8.5E-62 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_12310 ee8607fa84bbb7184fb815fecc09f446 202 Pfam PF01351 Ribonuclease HII 18 193 3.6E-32 T 11-10-2018 IPR024567 Ribonuclease HII/HIII domain APT56_02415 dfba1f1721b8e7172d316f1587ea0ca8 341 Gene3D G3DSA:3.60.110.10 3 294 1.6E-98 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_02415 dfba1f1721b8e7172d316f1587ea0ca8 341 Pfam PF00795 Carbon-nitrogen hydrolase 8 287 2.5E-40 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_02415 dfba1f1721b8e7172d316f1587ea0ca8 341 SUPERFAMILY SSF56317 6 310 3.53E-68 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_09245 d1e731daef9053097184c4ecda0a065e 419 Pfam PF13533 Biotin-lipoyl like 54 101 6.4E-12 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_09245 d1e731daef9053097184c4ecda0a065e 419 Gene3D G3DSA:1.10.287.470 120 188 1.0E-9 T 11-10-2018 APT56_09245 d1e731daef9053097184c4ecda0a065e 419 SUPERFAMILY SSF111369 164 274 6.67E-10 T 11-10-2018 APT56_09245 d1e731daef9053097184c4ecda0a065e 419 Gene3D G3DSA:2.40.50.100 54 86 9.1E-12 T 11-10-2018 APT56_09245 d1e731daef9053097184c4ecda0a065e 419 SUPERFAMILY SSF111369 52 107 9.55E-8 T 11-10-2018 APT56_09245 d1e731daef9053097184c4ecda0a065e 419 Gene3D G3DSA:1.10.287.470 87 110 9.1E-12 T 11-10-2018 APT56_09245 d1e731daef9053097184c4ecda0a065e 419 Gene3D G3DSA:2.40.30.170 238 359 5.6E-35 T 11-10-2018 APT56_09245 d1e731daef9053097184c4ecda0a065e 419 SUPERFAMILY SSF111369 122 182 8.24E-6 T 11-10-2018 APT56_09245 d1e731daef9053097184c4ecda0a065e 419 Pfam PF13437 HlyD family secretion protein 224 344 1.0E-15 T 11-10-2018 APT56_11520 441ef25becd7ae240273d3fbae96a12c 304 SUPERFAMILY SSF53850 93 301 6.21E-33 T 11-10-2018 APT56_11520 441ef25becd7ae240273d3fbae96a12c 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 5.0E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11520 441ef25becd7ae240273d3fbae96a12c 304 Pfam PF03466 LysR substrate binding domain 92 298 1.9E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11520 441ef25becd7ae240273d3fbae96a12c 304 Gene3D G3DSA:3.40.190.290 93 299 2.1E-29 T 11-10-2018 APT56_11520 441ef25becd7ae240273d3fbae96a12c 304 SUPERFAMILY SSF46785 7 89 5.01E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11520 441ef25becd7ae240273d3fbae96a12c 304 Gene3D G3DSA:1.10.10.10 4 92 8.3E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22685 17d0bc8b3994b3878afc960f3b7f0f9d 428 SUPERFAMILY SSF53850 57 294 3.91E-30 T 11-10-2018 APT56_22685 17d0bc8b3994b3878afc960f3b7f0f9d 428 Gene3D G3DSA:3.40.190.10 60 412 5.1E-124 T 11-10-2018 APT56_22685 17d0bc8b3994b3878afc960f3b7f0f9d 428 Gene3D G3DSA:3.40.190.10 146 417 5.1E-124 T 11-10-2018 APT56_22685 17d0bc8b3994b3878afc960f3b7f0f9d 428 Pfam PF13379 NMT1-like family 53 303 1.3E-106 T 11-10-2018 APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 1.3E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 1.3E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 1.3E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 1.3E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 1.3E-39 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 Gene3D G3DSA:3.40.1690.10 217 356 3.7E-59 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 SUPERFAMILY SSF160544 244 351 1.16E-42 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 347 8.7E-128 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_11950 8ff11de822a65e5c293ce27be6f4e416 384 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 354 2.5E-126 T 11-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 APT56_21310 a4272ae19d72130bb1745d4761593cf2 513 SUPERFAMILY SSF56801 6 512 1.7E-142 T 11-10-2018 APT56_21310 a4272ae19d72130bb1745d4761593cf2 513 Gene3D G3DSA:3.40.50.12780 14 409 5.7E-124 T 11-10-2018 APT56_21310 a4272ae19d72130bb1745d4761593cf2 513 Pfam PF13193 AMP-binding enzyme C-terminal domain 425 500 2.1E-18 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_21310 a4272ae19d72130bb1745d4761593cf2 513 Gene3D G3DSA:3.30.300.310 412 513 8.9E-33 T 11-10-2018 APT56_21310 a4272ae19d72130bb1745d4761593cf2 513 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_21310 a4272ae19d72130bb1745d4761593cf2 513 Pfam PF00501 AMP-binding enzyme 21 416 6.9E-93 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_16550 c98f1f007bf758b3a7861e9ccd9df646 591 Gene3D G3DSA:3.50.50.60 246 358 1.6E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_16550 c98f1f007bf758b3a7861e9ccd9df646 591 SUPERFAMILY SSF51905 5 582 1.3E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_16550 c98f1f007bf758b3a7861e9ccd9df646 591 SUPERFAMILY SSF54373 433 492 1.14E-6 T 11-10-2018 APT56_16550 c98f1f007bf758b3a7861e9ccd9df646 591 Gene3D G3DSA:3.50.50.60 478 583 8.6E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_16550 c98f1f007bf758b3a7861e9ccd9df646 591 Pfam PF05199 GMC oxidoreductase 448 571 3.3E-21 T 11-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 APT56_16550 c98f1f007bf758b3a7861e9ccd9df646 591 Gene3D G3DSA:3.50.50.60 6 132 1.2E-6 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_16550 c98f1f007bf758b3a7861e9ccd9df646 591 Pfam PF00732 GMC oxidoreductase 233 345 1.4E-11 T 11-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 APT56_23605 193ec596b624d19437290fe5fea7f1c6 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.3E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23605 193ec596b624d19437290fe5fea7f1c6 297 Gene3D G3DSA:3.40.190.10 167 247 8.4E-12 T 11-10-2018 APT56_23605 193ec596b624d19437290fe5fea7f1c6 297 SUPERFAMILY SSF46785 1 89 3.08E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23605 193ec596b624d19437290fe5fea7f1c6 297 SUPERFAMILY SSF53850 93 291 4.34E-18 T 11-10-2018 APT56_23605 193ec596b624d19437290fe5fea7f1c6 297 Gene3D G3DSA:3.40.190.10 106 166 8.4E-12 T 11-10-2018 APT56_23605 193ec596b624d19437290fe5fea7f1c6 297 Pfam PF03466 LysR substrate binding domain 94 293 2.6E-15 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_23605 193ec596b624d19437290fe5fea7f1c6 297 Gene3D G3DSA:1.10.10.10 3 88 1.2E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26065 82f93201fa5c89e1ac55bb6d26e691b0 307 Gene3D G3DSA:3.40.190.290 94 301 3.7E-29 T 11-10-2018 APT56_26065 82f93201fa5c89e1ac55bb6d26e691b0 307 Pfam PF03466 LysR substrate binding domain 92 297 1.9E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_26065 82f93201fa5c89e1ac55bb6d26e691b0 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 5.6E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26065 82f93201fa5c89e1ac55bb6d26e691b0 307 SUPERFAMILY SSF53850 87 300 2.04E-31 T 11-10-2018 APT56_26065 82f93201fa5c89e1ac55bb6d26e691b0 307 SUPERFAMILY SSF46785 6 90 2.32E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26065 82f93201fa5c89e1ac55bb6d26e691b0 307 Gene3D G3DSA:1.10.10.10 6 91 1.5E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_09310 0c06a5e195aa795ff64c1571e4defbf6 324 Pfam PF14525 AraC-binding-like domain 19 186 3.2E-25 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like APT56_09310 0c06a5e195aa795ff64c1571e4defbf6 324 Pfam PF12833 Helix-turn-helix domain 235 315 6.9E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_09310 0c06a5e195aa795ff64c1571e4defbf6 324 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 282 297 1.5E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_09310 0c06a5e195aa795ff64c1571e4defbf6 324 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 313 1.5E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_09310 0c06a5e195aa795ff64c1571e4defbf6 324 Gene3D G3DSA:1.10.10.60 206 323 3.5E-28 T 11-10-2018 APT56_09310 0c06a5e195aa795ff64c1571e4defbf6 324 SMART SM00342 228 313 1.5E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_09310 0c06a5e195aa795ff64c1571e4defbf6 324 SUPERFAMILY SSF46689 264 317 1.12E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_16905 205e165d5beb36d148caf6e34871f049 672 SUPERFAMILY SSF81901 496 626 1.7E-6 T 11-10-2018 APT56_16905 205e165d5beb36d148caf6e34871f049 672 Gene3D G3DSA:1.25.40.10 385 631 2.1E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_16905 205e165d5beb36d148caf6e34871f049 672 Pfam PF13226 Domain of unknown function (DUF4034) 8 280 2.2E-75 T 11-10-2018 IPR025115 Domain of unknown function DUF4034 APT56_12835 d300563cfcfefb3e206ca2e573c81557 666 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 122 653 1.9E-170 T 11-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 APT56_12835 d300563cfcfefb3e206ca2e573c81557 666 Pfam PF03477 ATP cone domain 5 92 3.4E-19 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 APT56_12835 d300563cfcfefb3e206ca2e573c81557 666 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 121 654 4.8E-139 T 11-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 APT56_12835 d300563cfcfefb3e206ca2e573c81557 666 SUPERFAMILY SSF51998 122 654 9.16E-156 T 11-10-2018 APT56_12835 d300563cfcfefb3e206ca2e573c81557 666 Gene3D G3DSA:3.20.70.20 134 661 1.4E-107 T 11-10-2018 APT56_22870 467efef3544c0c26cb14cb0d5872b400 83 Gene3D G3DSA:3.10.20.30 6 83 1.7E-20 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_22870 467efef3544c0c26cb14cb0d5872b400 83 Pfam PF02597 ThiS family 9 83 3.1E-17 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 APT56_22870 467efef3544c0c26cb14cb0d5872b400 83 SUPERFAMILY SSF54285 6 83 5.98E-16 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APT56_22995 91f54908f81c03d15495205cad80bb1a 441 SUPERFAMILY SSF52343 311 438 7.73E-21 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_22995 91f54908f81c03d15495205cad80bb1a 441 Gene3D G3DSA:2.40.30.10 211 309 3.9E-12 T 11-10-2018 APT56_22995 91f54908f81c03d15495205cad80bb1a 441 Pfam PF01794 Ferric reductase like transmembrane component 45 173 6.1E-18 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain APT56_22995 91f54908f81c03d15495205cad80bb1a 441 Pfam PF08022 FAD-binding domain 229 310 6.5E-7 T 11-10-2018 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 APT56_22995 91f54908f81c03d15495205cad80bb1a 441 SUPERFAMILY SSF63380 219 311 1.04E-15 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_22995 91f54908f81c03d15495205cad80bb1a 441 Gene3D G3DSA:3.40.50.80 311 441 1.8E-19 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_00880 e8b0ede9a5ea286c3dd2bbff831849ea 397 Gene3D G3DSA:3.90.1150.10 263 396 2.8E-35 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_00880 e8b0ede9a5ea286c3dd2bbff831849ea 397 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 390 1.5E-93 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_00880 e8b0ede9a5ea286c3dd2bbff831849ea 397 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 8 391 9.4E-113 T 11-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 APT56_00880 e8b0ede9a5ea286c3dd2bbff831849ea 397 Gene3D G3DSA:3.40.640.10 1 260 2.1E-67 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_00880 e8b0ede9a5ea286c3dd2bbff831849ea 397 PIRSF PIRSF001434 1 393 5.6E-117 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_00880 e8b0ede9a5ea286c3dd2bbff831849ea 397 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_00880 e8b0ede9a5ea286c3dd2bbff831849ea 397 SUPERFAMILY SSF53383 44 391 3.75E-91 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_18990 72937e94a4f07fb6f6e256e35fa4c35f 298 Gene3D G3DSA:3.40.50.1820 74 295 8.1E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18990 72937e94a4f07fb6f6e256e35fa4c35f 298 Pfam PF12146 Serine aminopeptidase, S33 96 237 4.3E-12 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 APT56_18990 72937e94a4f07fb6f6e256e35fa4c35f 298 SUPERFAMILY SSF53474 79 292 2.38E-34 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02890 17b8e2f532cb5f6fc7af2359e028a7cf 284 SUPERFAMILY SSF52374 2 280 1.26E-94 T 11-10-2018 APT56_02890 17b8e2f532cb5f6fc7af2359e028a7cf 284 Gene3D G3DSA:3.30.1300.10 176 278 4.9E-34 T 11-10-2018 APT56_02890 17b8e2f532cb5f6fc7af2359e028a7cf 284 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 19 74 9.7E-8 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT56_02890 17b8e2f532cb5f6fc7af2359e028a7cf 284 Gene3D G3DSA:3.40.50.620 2 175 4.7E-71 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_02890 17b8e2f532cb5f6fc7af2359e028a7cf 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 2 278 3.4E-88 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 APT56_02890 17b8e2f532cb5f6fc7af2359e028a7cf 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 37.4 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 APT56_02890 17b8e2f532cb5f6fc7af2359e028a7cf 284 Pfam PF02569 Pantoate-beta-alanine ligase 2 278 2.7E-94 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 APT56_15735 37dcc7d244b216ea0a717081843989ec 404 SUPERFAMILY SSF53901 205 402 1.42E-59 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_15735 37dcc7d244b216ea0a717081843989ec 404 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 144 160 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site APT56_15735 37dcc7d244b216ea0a717081843989ec 404 SUPERFAMILY SSF53901 4 244 4.45E-54 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_15735 37dcc7d244b216ea0a717081843989ec 404 Gene3D G3DSA:3.40.47.10 251 404 4.6E-48 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_15735 37dcc7d244b216ea0a717081843989ec 404 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 245 358 8.5E-31 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal APT56_15735 37dcc7d244b216ea0a717081843989ec 404 Gene3D G3DSA:3.40.47.10 1 245 6.8E-65 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_15735 37dcc7d244b216ea0a717081843989ec 404 SMART SM00825 Beta-ketoacyl synthase 28 404 9.9E-11 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APT56_15735 37dcc7d244b216ea0a717081843989ec 404 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 237 7.1E-45 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal APT56_19275 8a53fd5b2cbf10abd1a17b90a90d6b7d 298 Pfam PF02558 Ketopantoate reductase PanE/ApbA 9 151 1.5E-26 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain APT56_19275 8a53fd5b2cbf10abd1a17b90a90d6b7d 298 Gene3D G3DSA:3.40.50.720 2 170 7.3E-56 T 11-10-2018 APT56_19275 8a53fd5b2cbf10abd1a17b90a90d6b7d 298 Gene3D G3DSA:1.10.1040.10 172 298 2.1E-40 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_19275 8a53fd5b2cbf10abd1a17b90a90d6b7d 298 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 172 292 9.1E-23 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain APT56_19275 8a53fd5b2cbf10abd1a17b90a90d6b7d 298 SUPERFAMILY SSF51735 9 131 2.98E-10 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19275 8a53fd5b2cbf10abd1a17b90a90d6b7d 298 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 9 293 1.6E-46 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 APT56_19275 8a53fd5b2cbf10abd1a17b90a90d6b7d 298 SUPERFAMILY SSF48179 172 292 1.16E-24 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_09460 07265a708d6c9f1a3a89973138b11354 205 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 14 205 23.474 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 APT56_09460 07265a708d6c9f1a3a89973138b11354 205 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 15 204 2.9E-37 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 APT56_09460 07265a708d6c9f1a3a89973138b11354 205 Pfam PF01782 RimM N-terminal domain 16 106 2.1E-23 T 11-10-2018 IPR002676 RimM, N-terminal GO:0006364 APT56_09460 07265a708d6c9f1a3a89973138b11354 205 SUPERFAMILY SSF50447 13 110 1.94E-17 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_09460 07265a708d6c9f1a3a89973138b11354 205 Gene3D G3DSA:2.30.30.240 113 205 2.9E-23 T 11-10-2018 APT56_09460 07265a708d6c9f1a3a89973138b11354 205 SUPERFAMILY SSF50346 117 205 9.42E-12 T 11-10-2018 IPR011033 PRC-barrel-like superfamily APT56_09460 07265a708d6c9f1a3a89973138b11354 205 Gene3D G3DSA:2.40.30.60 13 111 8.9E-27 T 11-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 APT56_09460 07265a708d6c9f1a3a89973138b11354 205 Pfam PF05239 PRC-barrel domain 114 197 4.6E-5 T 11-10-2018 IPR027275 PRC-barrel domain APT56_08370 a3f9e967efd44450f0603b398a747303 154 SUPERFAMILY SSF52833 2 153 1.37E-47 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_08370 a3f9e967efd44450f0603b398a747303 154 Pfam PF00578 AhpC/TSA family 5 131 2.9E-33 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_08370 a3f9e967efd44450f0603b398a747303 154 Gene3D G3DSA:3.40.30.10 2 152 1.5E-43 T 11-10-2018 APT56_08370 a3f9e967efd44450f0603b398a747303 154 PIRSF PIRSF000239 1 153 3.0E-29 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_22680 01a462181531c380e8d368b8fe999052 289 SUPERFAMILY SSF161098 91 276 4.32E-28 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22680 01a462181531c380e8d368b8fe999052 289 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 81 277 1.6E-72 T 11-10-2018 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 APT56_22680 01a462181531c380e8d368b8fe999052 289 Gene3D G3DSA:1.10.3720.10 94 285 2.3E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22680 01a462181531c380e8d368b8fe999052 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 283 2.4E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_16820 be44ac81f26229608a25341721d83b61 491 Pfam PF01494 FAD binding domain 46 96 6.4E-5 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_16820 be44ac81f26229608a25341721d83b61 491 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 126 266 2.0E-16 T 11-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase APT56_16820 be44ac81f26229608a25341721d83b61 491 SUPERFAMILY SSF51905 46 381 2.81E-26 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_16820 be44ac81f26229608a25341721d83b61 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 47 66 3.0E-6 T 11-10-2018 APT56_16820 be44ac81f26229608a25341721d83b61 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 3.0E-6 T 11-10-2018 APT56_16820 be44ac81f26229608a25341721d83b61 491 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 227 245 3.0E-6 T 11-10-2018 APT56_16820 be44ac81f26229608a25341721d83b61 491 Gene3D G3DSA:3.50.50.60 37 405 1.4E-43 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_16820 be44ac81f26229608a25341721d83b61 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 46 68 1.6E-9 T 11-10-2018 APT56_16820 be44ac81f26229608a25341721d83b61 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 185 194 1.6E-9 T 11-10-2018 APT56_16820 be44ac81f26229608a25341721d83b61 491 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 227 252 1.6E-9 T 11-10-2018 APT56_25495 11124f6706c3ff18e90bdfcc4674593c 338 SUPERFAMILY SSF53850 25 257 1.18E-42 T 11-10-2018 APT56_25495 11124f6706c3ff18e90bdfcc4674593c 338 Gene3D G3DSA:3.40.190.10 121 226 1.7E-44 T 11-10-2018 APT56_25495 11124f6706c3ff18e90bdfcc4674593c 338 SMART SM00062 34 263 2.5E-39 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_25495 11124f6706c3ff18e90bdfcc4674593c 338 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_25495 11124f6706c3ff18e90bdfcc4674593c 338 Gene3D G3DSA:3.40.190.10 29 242 1.7E-44 T 11-10-2018 APT56_25495 11124f6706c3ff18e90bdfcc4674593c 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 253 8.0E-27 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_03145 0d02cc35d83a460d3aee54c51d8c61f9 221 Gene3D G3DSA:3.20.20.70 6 213 1.6E-53 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_03145 0d02cc35d83a460d3aee54c51d8c61f9 221 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 8 214 23.898 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_03145 0d02cc35d83a460d3aee54c51d8c61f9 221 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 10 207 3.8E-47 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_03145 0d02cc35d83a460d3aee54c51d8c61f9 221 SUPERFAMILY SSF51391 6 208 1.83E-53 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_03145 0d02cc35d83a460d3aee54c51d8c61f9 221 Pfam PF02581 Thiamine monophosphate synthase 10 195 1.8E-50 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_09250 fb8bcb237a6d28851b393c4eb2405172 475 Gene3D G3DSA:2.20.200.10 94 347 5.8E-110 T 11-10-2018 APT56_09250 fb8bcb237a6d28851b393c4eb2405172 475 SUPERFAMILY SSF56954 1 461 2.35E-95 T 11-10-2018 APT56_09250 fb8bcb237a6d28851b393c4eb2405172 475 Pfam PF02321 Outer membrane efflux protein 280 451 6.2E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_09250 fb8bcb237a6d28851b393c4eb2405172 475 Pfam PF02321 Outer membrane efflux protein 57 248 2.4E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_09250 fb8bcb237a6d28851b393c4eb2405172 475 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 8 458 1.0E-119 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_09250 fb8bcb237a6d28851b393c4eb2405172 475 Gene3D G3DSA:1.20.1600.10 47 459 5.8E-110 T 11-10-2018 APT56_18545 fff585f6ebb0137d083b47ac56ff609b 687 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 47 685 9.6E-141 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_18545 fff585f6ebb0137d083b47ac56ff609b 687 Gene3D G3DSA:2.40.170.20 152 687 1.2E-202 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_18545 fff585f6ebb0137d083b47ac56ff609b 687 Gene3D G3DSA:2.170.130.10 26 151 4.0E-33 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_18545 fff585f6ebb0137d083b47ac56ff609b 687 Pfam PF07715 TonB-dependent Receptor Plug Domain 45 143 7.6E-11 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_18545 fff585f6ebb0137d083b47ac56ff609b 687 Pfam PF00593 TonB dependent receptor 245 685 5.0E-59 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_18545 fff585f6ebb0137d083b47ac56ff609b 687 SUPERFAMILY SSF56935 11 686 1.58E-132 T 11-10-2018 APT56_19660 09b47b8e7f6c4a52296e2718bc502edd 593 Gene3D G3DSA:3.40.50.300 348 589 1.6E-53 T 11-10-2018 APT56_19660 09b47b8e7f6c4a52296e2718bc502edd 593 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 566 587 9.3E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_19660 09b47b8e7f6c4a52296e2718bc502edd 593 SMART SM00382 377 565 1.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19660 09b47b8e7f6c4a52296e2718bc502edd 593 Pfam PF00005 ABC transporter 369 516 2.0E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19660 09b47b8e7f6c4a52296e2718bc502edd 593 Pfam PF02653 Branched-chain amino acid transport system / permease component 34 302 9.1E-33 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_19660 09b47b8e7f6c4a52296e2718bc502edd 593 SUPERFAMILY SSF52540 351 589 1.04E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 5 644 27.167 T 11-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 SMART SM00853 461 604 3.2E-53 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 Gene3D G3DSA:2.30.42.20 463 641 3.2E-59 T 11-10-2018 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 Pfam PF08676 MutL C terminal dimerisation domain 457 604 1.5E-48 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 SUPERFAMILY SSF55874 5 203 8.25E-51 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 Gene3D G3DSA:3.30.230.10 213 325 2.4E-36 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 SMART SM01340 208 326 9.3E-55 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 208 325 3.7E-37 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 127 5.1E-11 T 11-10-2018 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 SUPERFAMILY SSF54211 196 326 7.97E-34 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 Gene3D G3DSA:3.30.1370.100 504 599 3.2E-59 T 11-10-2018 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 7 306 2.3E-88 T 11-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 Gene3D G3DSA:3.30.565.10 6 209 2.4E-62 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 SUPERFAMILY SSF118116 456 646 4.45E-58 T 11-10-2018 IPR037198 MutL, C-terminal domain superfamily APT56_04855 b6f0dbb47c8f825ceef833c2e1e69655 648 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 97 103 - T 11-10-2018 IPR014762 DNA mismatch repair, conserved site APT56_16575 98eb45589500315a1f5f37e053a53ed7 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 3.6E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_16575 98eb45589500315a1f5f37e053a53ed7 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 3.6E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_16575 98eb45589500315a1f5f37e053a53ed7 344 SMART SM00342 248 330 1.2E-15 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_16575 98eb45589500315a1f5f37e053a53ed7 344 Gene3D G3DSA:1.10.10.60 227 337 1.3E-21 T 11-10-2018 APT56_16575 98eb45589500315a1f5f37e053a53ed7 344 SUPERFAMILY SSF46689 283 334 2.82E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_16575 98eb45589500315a1f5f37e053a53ed7 344 Pfam PF12833 Helix-turn-helix domain 256 331 1.3E-15 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_16575 98eb45589500315a1f5f37e053a53ed7 344 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 283 326 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 Pfam PF02779 Transketolase, pyrimidine binding domain 316 474 1.0E-37 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 5 616 45.66 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 Gene3D G3DSA:3.40.50.970 313 484 1.3E-64 T 11-10-2018 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 SUPERFAMILY SSF52518 3 345 1.82E-76 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 Pfam PF02780 Transketolase, C-terminal domain 491 607 3.1E-27 T 11-10-2018 IPR033248 Transketolase, C-terminal domain APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 8 613 1.3E-260 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 6 278 3.6E-120 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 SMART SM00861 315 479 2.8E-60 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 SUPERFAMILY SSF52922 487 613 2.62E-33 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 ProSitePatterns PS00802 Transketolase signature 2. 421 437 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 Gene3D G3DSA:3.40.50.920 491 616 9.5E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 ProSitePatterns PS00801 Transketolase signature 1. 31 50 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_08065 578c19e8d9f8c7cc8a44526dfe6e25f9 620 SUPERFAMILY SSF52518 291 474 1.47E-57 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 SMART SM00965 61 112 9.2E-13 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 Pfam PF07715 TonB-dependent Receptor Plug Domain 157 256 1.3E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 Gene3D G3DSA:3.55.50.30 30 133 3.9E-25 T 11-10-2018 APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 Pfam PF00593 TonB dependent receptor 330 799 2.0E-60 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 Gene3D G3DSA:2.170.130.10 134 266 1.2E-36 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 Gene3D G3DSA:2.40.170.20 267 800 1.5E-142 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 157 798 1.9E-115 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 SUPERFAMILY SSF56935 113 800 5.5E-138 T 11-10-2018 APT56_11560 729b0b5bd3354ea9bb497109b19682ec 800 Pfam PF07660 Secretin and TonB N terminus short domain 63 106 8.2E-7 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_27010 5f1ea1a09c45fdf139216d0a1fa000e5 565 Pfam PF17287 POTRA domain 150 202 5.5E-11 T 11-10-2018 IPR035251 ShlB, POTRA domain APT56_27010 5f1ea1a09c45fdf139216d0a1fa000e5 565 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 207 521 2.4E-86 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal APT56_27010 5f1ea1a09c45fdf139216d0a1fa000e5 565 Pfam PF08479 POTRA domain, ShlB-type 76 149 1.0E-11 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type APT56_27010 5f1ea1a09c45fdf139216d0a1fa000e5 565 PIRSF PIRSF029745 1 565 1.7E-116 T 11-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 APT56_27010 5f1ea1a09c45fdf139216d0a1fa000e5 565 Gene3D G3DSA:2.40.160.50 180 565 2.6E-78 T 11-10-2018 APT56_05455 7bfcc1921e73fa06a893b29014dfea87 249 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 10 237 40.922 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 APT56_05455 7bfcc1921e73fa06a893b29014dfea87 249 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 110 231 4.3E-39 T 11-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 APT56_05455 7bfcc1921e73fa06a893b29014dfea87 249 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 20 90 7.4E-20 T 11-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 APT56_05455 7bfcc1921e73fa06a893b29014dfea87 249 SUPERFAMILY SSF55729 83 238 1.01E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_05455 7bfcc1921e73fa06a893b29014dfea87 249 PIRSF PIRSF037208 3 245 8.5E-89 T 11-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 APT56_10060 090eebeeb4f6a7af1adf02d1a427c5d2 393 Gene3D G3DSA:1.10.443.10 173 372 1.7E-22 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APT56_10060 090eebeeb4f6a7af1adf02d1a427c5d2 393 Pfam PF00589 Phage integrase family 181 351 3.5E-14 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT56_10060 090eebeeb4f6a7af1adf02d1a427c5d2 393 SUPERFAMILY SSF56349 64 361 7.06E-39 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT56_10060 090eebeeb4f6a7af1adf02d1a427c5d2 393 Gene3D G3DSA:1.10.150.130 59 158 9.7E-6 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APT56_00830 2c05a79ba8b73a3058604e642c57cc7f 621 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 15 613 44.3 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 APT56_00830 2c05a79ba8b73a3058604e642c57cc7f 621 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 19 611 0.0 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 APT56_00830 2c05a79ba8b73a3058604e642c57cc7f 621 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 23 609 8.0E-247 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 APT56_00830 2c05a79ba8b73a3058604e642c57cc7f 621 PIRSF PIRSF000719 101 615 2.1E-205 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 APT56_00830 2c05a79ba8b73a3058604e642c57cc7f 621 PIRSF PIRSF000719 16 90 7.2E-16 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 APT56_04455 a88a76d5c15a6e8deee73d9b95bfb808 398 SUPERFAMILY SSF55031 184 297 1.96E-32 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_04455 a88a76d5c15a6e8deee73d9b95bfb808 398 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 382 1.4E-112 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_04455 a88a76d5c15a6e8deee73d9b95bfb808 398 PIRSF PIRSF005962 2 398 8.2E-135 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_04455 a88a76d5c15a6e8deee73d9b95bfb808 398 Gene3D G3DSA:3.40.630.10 16 380 6.0E-140 T 11-10-2018 APT56_04455 a88a76d5c15a6e8deee73d9b95bfb808 398 Gene3D G3DSA:3.30.70.360 182 296 6.0E-140 T 11-10-2018 APT56_04455 a88a76d5c15a6e8deee73d9b95bfb808 398 SUPERFAMILY SSF53187 3 396 8.0E-89 T 11-10-2018 APT56_04455 a88a76d5c15a6e8deee73d9b95bfb808 398 Pfam PF01546 Peptidase family M20/M25/M40 74 356 8.4E-37 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_04455 a88a76d5c15a6e8deee73d9b95bfb808 398 Pfam PF07687 Peptidase dimerisation domain 186 282 2.5E-13 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_09900 7a49038d45313d8e9832bafb5a024ca5 106 Pfam PF07883 Cupin domain 22 91 2.2E-7 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_09900 7a49038d45313d8e9832bafb5a024ca5 106 Gene3D G3DSA:2.60.120.10 1 95 1.7E-30 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_09900 7a49038d45313d8e9832bafb5a024ca5 106 SUPERFAMILY SSF51182 3 91 2.51E-14 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_10465 050408b7f385a40fc2ad38e0d088e96b 600 Gene3D G3DSA:1.20.1560.10 23 344 2.7E-126 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_10465 050408b7f385a40fc2ad38e0d088e96b 600 Pfam PF00664 ABC transporter transmembrane region 37 310 9.0E-43 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_10465 050408b7f385a40fc2ad38e0d088e96b 600 SMART SM00382 381 567 1.1E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_10465 050408b7f385a40fc2ad38e0d088e96b 600 SUPERFAMILY SSF90123 18 342 5.49E-67 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_10465 050408b7f385a40fc2ad38e0d088e96b 600 Gene3D G3DSA:3.40.50.300 347 599 2.2E-94 T 11-10-2018 APT56_10465 050408b7f385a40fc2ad38e0d088e96b 600 Pfam PF00005 ABC transporter 372 521 4.9E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_10465 050408b7f385a40fc2ad38e0d088e96b 600 ProSitePatterns PS00211 ABC transporters family signature. 493 507 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_10465 050408b7f385a40fc2ad38e0d088e96b 600 SUPERFAMILY SSF52540 346 591 2.61E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25895 394ccbff9c3198f245601a94e4608242 279 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 227 268 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_25895 394ccbff9c3198f245601a94e4608242 279 Gene3D G3DSA:1.10.10.60 174 277 3.6E-22 T 11-10-2018 APT56_25895 394ccbff9c3198f245601a94e4608242 279 SMART SM00342 190 272 2.6E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_25895 394ccbff9c3198f245601a94e4608242 279 Gene3D G3DSA:2.60.120.10 28 112 2.6E-8 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_25895 394ccbff9c3198f245601a94e4608242 279 Pfam PF12833 Helix-turn-helix domain 196 274 1.4E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_25895 394ccbff9c3198f245601a94e4608242 279 SUPERFAMILY SSF51182 24 219 5.34E-21 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_25895 394ccbff9c3198f245601a94e4608242 279 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 5.9E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_25895 394ccbff9c3198f245601a94e4608242 279 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 5.9E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_25895 394ccbff9c3198f245601a94e4608242 279 SUPERFAMILY SSF46689 227 273 8.51E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_13775 236e98914463a58604e4112d9168c7c9 277 SUPERFAMILY SSF52402 1 143 1.17E-12 T 11-10-2018 APT56_13775 236e98914463a58604e4112d9168c7c9 277 Pfam PF00582 Universal stress protein family 1 115 1.0E-6 T 11-10-2018 IPR006016 UspA APT56_13775 236e98914463a58604e4112d9168c7c9 277 Pfam PF00582 Universal stress protein family 191 274 1.4E-9 T 11-10-2018 IPR006016 UspA APT56_13775 236e98914463a58604e4112d9168c7c9 277 Gene3D G3DSA:3.40.50.12370 4 276 1.7E-29 T 11-10-2018 APT56_13775 236e98914463a58604e4112d9168c7c9 277 SUPERFAMILY SSF52402 156 275 2.18E-17 T 11-10-2018 APT56_01815 3b7234087b2ac4cae676ce2053a810bd 325 Gene3D G3DSA:1.10.3720.10 90 315 2.1E-24 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01815 3b7234087b2ac4cae676ce2053a810bd 325 SUPERFAMILY SSF161098 95 306 1.83E-19 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01815 3b7234087b2ac4cae676ce2053a810bd 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 324 6.9E-46 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 Gene3D G3DSA:1.10.10.10 17 82 2.0E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 SUPERFAMILY SSF48008 102 240 3.4E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 Pfam PF07729 FCD domain 106 232 2.7E-22 T 11-10-2018 IPR011711 GntR, C-terminal APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 SMART SM00345 22 81 2.2E-24 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 SUPERFAMILY SSF46785 13 85 1.88E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 4.5E-24 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 2.3E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 2.3E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 SMART SM00895 105 233 4.4E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_24570 8d8eb9898e370fd0700bb26f26a9dcb6 242 Gene3D G3DSA:1.20.120.530 98 242 1.5E-29 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Gene3D G3DSA:3.30.70.1430 566 665 0.0 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Gene3D G3DSA:1.20.1640.10 512 1019 0.0 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 SUPERFAMILY SSF82866 295 496 1.31E-49 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Gene3D G3DSA:3.30.70.1440 666 862 0.0 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 SUPERFAMILY SSF82714 719 805 6.41E-22 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Gene3D G3DSA:3.30.70.1430 38 814 0.0 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Gene3D G3DSA:3.30.70.1320 133 331 0.0 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 SUPERFAMILY SSF82693 38 131 2.88E-25 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Gene3D G3DSA:1.20.1640.10 8 511 0.0 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 469 492 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 335 358 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 362 383 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 444 467 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.6E-103 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 SUPERFAMILY SSF82693 142 329 1.71E-21 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 SUPERFAMILY SSF82866 802 1025 7.72E-42 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 SUPERFAMILY SSF82693 564 667 4.36E-28 T 11-10-2018 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1022 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1033 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Gene3D G3DSA:3.30.2090.10 178 274 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 Gene3D G3DSA:3.30.2090.10 718 806 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_06325 c78f98e2e97b7010d29ca8a272aeb25a 1045 SUPERFAMILY SSF82714 182 270 2.49E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_25110 f24be41ab2ec3a0006bda3a573e9f97d 46 Pfam PF00444 Ribosomal protein L36 1 41 1.5E-18 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_25110 f24be41ab2ec3a0006bda3a573e9f97d 46 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 41 1.4E-9 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_25110 f24be41ab2ec3a0006bda3a573e9f97d 46 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 18.124 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_25110 f24be41ab2ec3a0006bda3a573e9f97d 46 SUPERFAMILY SSF57840 1 41 8.37E-15 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_25110 f24be41ab2ec3a0006bda3a573e9f97d 46 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_25110 f24be41ab2ec3a0006bda3a573e9f97d 46 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 17 41 3.0E-4 T 11-10-2018 APT56_15015 4caefacadca876ee0f8e380d172dd591 268 Gene3D G3DSA:3.30.2040.10 132 239 4.8E-50 T 11-10-2018 APT56_15015 4caefacadca876ee0f8e380d172dd591 268 SUPERFAMILY SSF160920 14 260 3.14E-116 T 11-10-2018 IPR038021 Putative hydro-lyase APT56_15015 4caefacadca876ee0f8e380d172dd591 268 PIRSF PIRSF029755 2 268 3.5E-126 T 11-10-2018 IPR016938 Uncharacterised protein family UPF0317 APT56_15015 4caefacadca876ee0f8e380d172dd591 268 Pfam PF07286 Protein of unknown function (DUF1445) 117 259 3.4E-68 T 11-10-2018 IPR009906 D-glutamate cyclase APT56_15015 4caefacadca876ee0f8e380d172dd591 268 Hamap MF_01830 Putative hydro-lyase . 13 267 55.801 T 11-10-2018 IPR016938 Uncharacterised protein family UPF0317 APT56_15015 4caefacadca876ee0f8e380d172dd591 268 Gene3D G3DSA:3.40.1640.10 1 131 1.1E-49 T 11-10-2018 APT56_26415 ce380849cb39b91635da1804fb67624a 331 Gene3D G3DSA:3.40.190.10 132 256 9.5E-103 T 11-10-2018 APT56_26415 ce380849cb39b91635da1804fb67624a 331 Gene3D G3DSA:3.40.190.150 33 321 9.5E-103 T 11-10-2018 APT56_26415 ce380849cb39b91635da1804fb67624a 331 SUPERFAMILY SSF53850 122 292 2.9E-9 T 11-10-2018 APT56_26415 ce380849cb39b91635da1804fb67624a 331 PIRSF PIRSF017082 1 331 3.8E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_26415 ce380849cb39b91635da1804fb67624a 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 328 7.1E-73 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20135 a37ce6a605dc4c626fa62bb4dc743b9d 200 Pfam PF01381 Helix-turn-helix 136 190 3.9E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_20135 a37ce6a605dc4c626fa62bb4dc743b9d 200 SMART SM00530 135 190 1.4E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_20135 a37ce6a605dc4c626fa62bb4dc743b9d 200 Gene3D G3DSA:1.10.260.40 134 194 1.6E-10 T 11-10-2018 APT56_20135 a37ce6a605dc4c626fa62bb4dc743b9d 200 SUPERFAMILY SSF47413 135 190 1.77E-10 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_18745 b251869c70485356240f46fa0c0db87c 191 SUPERFAMILY SSF55729 9 156 1.35E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_18745 b251869c70485356240f46fa0c0db87c 191 Pfam PF13302 Acetyltransferase (GNAT) domain 14 153 1.3E-21 T 11-10-2018 IPR000182 GNAT domain APT56_18745 b251869c70485356240f46fa0c0db87c 191 Gene3D G3DSA:3.40.630.30 5 177 7.0E-34 T 11-10-2018 APT56_10810 55a7169ce2e5fb8c0b2208e384dda898 295 Pfam PF00892 EamA-like transporter family 7 133 2.4E-19 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_10810 55a7169ce2e5fb8c0b2208e384dda898 295 Pfam PF00892 EamA-like transporter family 151 286 5.3E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_10810 55a7169ce2e5fb8c0b2208e384dda898 295 SUPERFAMILY SSF103481 192 287 1.26E-11 T 11-10-2018 APT56_10810 55a7169ce2e5fb8c0b2208e384dda898 295 SUPERFAMILY SSF103481 39 135 2.75E-14 T 11-10-2018 APT56_07890 b0169625d389ccecc3a5d2b76e441240 400 Gene3D G3DSA:1.10.10.10 3 84 2.6E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07890 b0169625d389ccecc3a5d2b76e441240 400 Pfam PF04079 Segregation and condensation complex subunit ScpB 12 170 3.5E-45 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 APT56_07890 b0169625d389ccecc3a5d2b76e441240 400 Gene3D G3DSA:1.10.10.10 85 180 3.9E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07890 b0169625d389ccecc3a5d2b76e441240 400 SUPERFAMILY SSF46785 87 162 5.45E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_07890 b0169625d389ccecc3a5d2b76e441240 400 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 16 174 3.3E-30 T 11-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 APT56_07890 b0169625d389ccecc3a5d2b76e441240 400 SUPERFAMILY SSF46785 2 84 8.16E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13490 2c44590bb618fbdb661be55714ec8873 402 Gene3D G3DSA:3.90.1150.10 27 392 8.4E-123 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_13490 2c44590bb618fbdb661be55714ec8873 402 SUPERFAMILY SSF53383 5 396 4.62E-104 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_13490 2c44590bb618fbdb661be55714ec8873 402 Pfam PF00155 Aminotransferase class I and II 35 391 1.2E-63 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_13490 2c44590bb618fbdb661be55714ec8873 402 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 237 250 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APT56_13490 2c44590bb618fbdb661be55714ec8873 402 Gene3D G3DSA:3.40.640.10 64 287 8.4E-123 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_00630 dfcdbf217dc7d9c5633b9f602464677a 256 SMART SM00382 30 211 6.0E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00630 dfcdbf217dc7d9c5633b9f602464677a 256 Gene3D G3DSA:3.40.50.300 1 242 1.6E-65 T 11-10-2018 APT56_00630 dfcdbf217dc7d9c5633b9f602464677a 256 SUPERFAMILY SSF52540 1 233 1.5E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00630 dfcdbf217dc7d9c5633b9f602464677a 256 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00630 dfcdbf217dc7d9c5633b9f602464677a 256 Pfam PF00005 ABC transporter 23 161 5.6E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14420 8cdd428e7303a1dffef1e51ff57cfd60 411 Gene3D G3DSA:3.50.50.60 4 52 9.5E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_14420 8cdd428e7303a1dffef1e51ff57cfd60 411 Pfam PF01266 FAD dependent oxidoreductase 4 392 8.2E-59 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_14420 8cdd428e7303a1dffef1e51ff57cfd60 411 SUPERFAMILY SSF54373 270 355 2.24E-5 T 11-10-2018 APT56_14420 8cdd428e7303a1dffef1e51ff57cfd60 411 SUPERFAMILY SSF51905 3 411 6.41E-45 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_14420 8cdd428e7303a1dffef1e51ff57cfd60 411 Gene3D G3DSA:3.30.9.10 135 354 1.9E-43 T 11-10-2018 APT56_14420 8cdd428e7303a1dffef1e51ff57cfd60 411 Gene3D G3DSA:3.50.50.60 100 395 1.9E-43 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02055 07702b9f5714e453b17961f7c93bc70b 432 PIRSF PIRSF019422 1 431 6.8E-125 T 11-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A APT56_02055 07702b9f5714e453b17961f7c93bc70b 432 SUPERFAMILY SSF50685 53 425 1.19E-120 T 11-10-2018 IPR036908 RlpA-like domain superfamily APT56_02055 07702b9f5714e453b17961f7c93bc70b 432 Pfam PF06725 3D domain 348 421 3.7E-23 T 11-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 APT56_02055 07702b9f5714e453b17961f7c93bc70b 432 Gene3D G3DSA:2.40.40.10 68 424 3.0E-124 T 11-10-2018 IPR036908 RlpA-like domain superfamily APT56_02055 07702b9f5714e453b17961f7c93bc70b 432 Gene3D G3DSA:2.40.240.50 165 327 3.0E-124 T 11-10-2018 APT56_02055 07702b9f5714e453b17961f7c93bc70b 432 SMART SM00925 166 325 8.0E-91 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 APT56_02055 07702b9f5714e453b17961f7c93bc70b 432 Pfam PF03562 MltA specific insert domain 74 325 3.2E-80 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 APT56_12430 9e6e3943db3c389a89b77af0685d382a 381 Pfam PF02618 YceG-like family 45 329 1.5E-74 T 11-10-2018 IPR003770 Endolytic murein transglycosylase APT56_12430 9e6e3943db3c389a89b77af0685d382a 381 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 10 336 31.149 T 11-10-2018 IPR003770 Endolytic murein transglycosylase APT56_12430 9e6e3943db3c389a89b77af0685d382a 381 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 8 332 1.5E-82 T 11-10-2018 IPR003770 Endolytic murein transglycosylase APT56_12430 9e6e3943db3c389a89b77af0685d382a 381 Gene3D G3DSA:3.30.160.60 303 335 5.5E-8 T 11-10-2018 APT56_14395 26ef2fa2a984613b2e3c99de3de0b542 432 Gene3D G3DSA:1.20.1250.20 23 410 1.0E-46 T 11-10-2018 APT56_14395 26ef2fa2a984613b2e3c99de3de0b542 432 SUPERFAMILY SSF103473 20 416 1.96E-55 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_14395 26ef2fa2a984613b2e3c99de3de0b542 432 Pfam PF07690 Major Facilitator Superfamily 35 256 4.2E-28 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_07040 b9cb619edb5b63bb606163209dac9f81 364 Pfam PF03576 Peptidase family S58 20 344 1.2E-109 T 11-10-2018 IPR005321 Peptidase S58, DmpA APT56_07040 b9cb619edb5b63bb606163209dac9f81 364 SUPERFAMILY SSF56266 11 359 1.6E-98 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_07040 b9cb619edb5b63bb606163209dac9f81 364 Gene3D G3DSA:3.60.70.12 8 353 2.0E-122 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 171 189 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 Hamap MF_01974 Methionine aminopeptidase [map]. 2 254 38.892 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 Pfam PF00557 Metallopeptidase family M24 11 245 2.8E-49 T 11-10-2018 IPR000994 Peptidase M24 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 253 7.1E-90 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 9.7E-20 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 PRINTS PR00599 Methionine aminopeptidase-1 signature 73 86 9.7E-20 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 9.7E-20 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 PRINTS PR00599 Methionine aminopeptidase-1 signature 95 111 9.7E-20 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 Gene3D G3DSA:3.90.230.10 2 260 1.4E-99 T 11-10-2018 APT56_12235 0eae9593fc01b85883b97780d6d05e4b 273 SUPERFAMILY SSF55920 3 255 9.94E-83 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APT56_11095 a59aeee9ccdd121f8b312cddf632c12f 227 SMART SM00345 20 78 1.0E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11095 a59aeee9ccdd121f8b312cddf632c12f 227 Gene3D G3DSA:1.20.120.530 82 224 9.4E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_11095 a59aeee9ccdd121f8b312cddf632c12f 227 SUPERFAMILY SSF48008 85 218 1.83E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_11095 a59aeee9ccdd121f8b312cddf632c12f 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 78 5.6E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11095 a59aeee9ccdd121f8b312cddf632c12f 227 SUPERFAMILY SSF46785 19 82 4.68E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11095 a59aeee9ccdd121f8b312cddf632c12f 227 SMART SM00895 88 212 3.1E-12 T 11-10-2018 IPR011711 GntR, C-terminal APT56_11095 a59aeee9ccdd121f8b312cddf632c12f 227 Pfam PF07729 FCD domain 88 210 2.9E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_11095 a59aeee9ccdd121f8b312cddf632c12f 227 Gene3D G3DSA:1.10.10.10 4 79 1.3E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25450 84083d4f0bdd78b833bdd017d7da2d78 241 TIGRFAM TIGR02791 VirB5: P-type DNA transfer protein VirB5 1 219 5.5E-98 T 11-10-2018 IPR014158 Type IV secretion system, VirB5 APT56_25450 84083d4f0bdd78b833bdd017d7da2d78 241 Gene3D G3DSA:1.20.58.430 24 219 7.5E-66 T 11-10-2018 IPR023220 Type IV secretion system, VirB5-domain APT56_25450 84083d4f0bdd78b833bdd017d7da2d78 241 SUPERFAMILY SSF101082 24 219 6.15E-59 T 11-10-2018 APT56_25450 84083d4f0bdd78b833bdd017d7da2d78 241 Pfam PF07996 Type IV secretion system proteins 23 217 1.3E-71 T 11-10-2018 IPR014158 Type IV secretion system, VirB5 APT56_22460 52df8f397bf9c90709e11da0db1c389f 264 SUPERFAMILY SSF161098 67 254 1.44E-33 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22460 52df8f397bf9c90709e11da0db1c389f 264 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 19 263 3.7E-92 T 11-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 APT56_22460 52df8f397bf9c90709e11da0db1c389f 264 Gene3D G3DSA:1.10.3720.10 65 263 1.3E-33 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22460 52df8f397bf9c90709e11da0db1c389f 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 262 2.0E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_01170 02952dda7ec67e7846cc55ec93cf2d9a 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 111 137 1.3E-48 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT56_01170 02952dda7ec67e7846cc55ec93cf2d9a 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 93 111 1.3E-48 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT56_01170 02952dda7ec67e7846cc55ec93cf2d9a 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 162 190 1.3E-48 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT56_01170 02952dda7ec67e7846cc55ec93cf2d9a 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 14 41 1.3E-48 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT56_01170 02952dda7ec67e7846cc55ec93cf2d9a 263 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 11 247 16.877 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT56_01170 02952dda7ec67e7846cc55ec93cf2d9a 263 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 16 234 1.5E-67 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT56_01170 02952dda7ec67e7846cc55ec93cf2d9a 263 Pfam PF00902 Sec-independent protein translocase protein (TatC) 18 229 6.6E-66 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APT56_01045 3a975d0efa2d3aa87ef3b412a60cac02 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 450 1.9E-91 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_01045 3a975d0efa2d3aa87ef3b412a60cac02 535 Gene3D G3DSA:3.10.105.10 272 510 1.1E-121 T 11-10-2018 APT56_01045 3a975d0efa2d3aa87ef3b412a60cac02 535 SUPERFAMILY SSF53850 23 518 7.6E-127 T 11-10-2018 APT56_01045 3a975d0efa2d3aa87ef3b412a60cac02 535 PIRSF PIRSF002741 3 528 5.8E-89 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_01045 3a975d0efa2d3aa87ef3b412a60cac02 535 Gene3D G3DSA:3.40.190.10 195 518 1.1E-121 T 11-10-2018 APT56_01045 3a975d0efa2d3aa87ef3b412a60cac02 535 Gene3D G3DSA:3.90.76.10 38 194 1.1E-121 T 11-10-2018 APT56_06240 7605c2ba62b3d8d3e40a3534f3232e9f 314 SUPERFAMILY SSF161098 89 298 4.09E-17 T 11-10-2018 IPR035906 MetI-like superfamily APT56_06240 7605c2ba62b3d8d3e40a3534f3232e9f 314 Gene3D G3DSA:1.10.3720.10 85 304 2.4E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_06240 7605c2ba62b3d8d3e40a3534f3232e9f 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 312 4.1E-38 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Gene3D G3DSA:3.30.70.1320 135 326 1.3E-299 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 SUPERFAMILY SSF82714 183 266 8.37E-15 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 SUPERFAMILY SSF82714 708 792 1.18E-18 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 SUPERFAMILY SSF82693 138 324 4.39E-23 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 2.3E-76 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Gene3D G3DSA:3.30.70.1430 40 802 1.3E-299 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Gene3D G3DSA:1.20.1640.10 10 503 1.3E-299 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 SUPERFAMILY SSF82693 556 653 9.94E-14 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 SUPERFAMILY SSF82866 797 1016 4.32E-45 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 SUPERFAMILY SSF82693 40 134 3.4E-23 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Gene3D G3DSA:3.30.70.1430 558 653 1.3E-299 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Gene3D G3DSA:3.30.70.1440 654 852 1.3E-299 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Pfam PF00873 AcrB/AcrD/AcrF family 4 1013 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Gene3D G3DSA:3.30.2090.10 706 794 1.3E-299 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Gene3D G3DSA:3.30.2090.10 179 269 1.3E-299 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 SUPERFAMILY SSF82866 290 491 6.8E-47 T 11-10-2018 APT56_02925 97958beebd75dcd4e4b27c92c834e76b 1032 Gene3D G3DSA:1.20.1640.10 504 1010 1.3E-299 T 11-10-2018 APT56_07795 450a221da240afe8551a68c28c5c8efd 438 Gene3D G3DSA:3.40.50.12780 2 329 3.0E-143 T 11-10-2018 APT56_07795 450a221da240afe8551a68c28c5c8efd 438 Pfam PF14535 AMP-binding enzyme C-terminal domain 338 435 6.3E-24 T 11-10-2018 IPR028154 AMP-dependent ligase, C-terminal APT56_07795 450a221da240afe8551a68c28c5c8efd 438 Gene3D G3DSA:3.30.300.30 330 436 1.0E-28 T 11-10-2018 APT56_07795 450a221da240afe8551a68c28c5c8efd 438 Pfam PF00501 AMP-binding enzyme 93 292 4.3E-18 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_07795 450a221da240afe8551a68c28c5c8efd 438 PIRSF PIRSF006444 3 437 3.5E-207 T 11-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 APT56_07795 450a221da240afe8551a68c28c5c8efd 438 SUPERFAMILY SSF56801 20 432 1.96E-64 T 11-10-2018 APT56_07795 450a221da240afe8551a68c28c5c8efd 438 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 14 435 1.4E-219 T 11-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 164 185 9.0E-66 T 11-10-2018 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 89 114 9.0E-66 T 11-10-2018 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 237 258 9.0E-66 T 11-10-2018 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 327 339 9.0E-66 T 11-10-2018 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 432 451 9.0E-66 T 11-10-2018 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 117 137 9.0E-66 T 11-10-2018 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 259 285 9.0E-66 T 11-10-2018 APT56_06445 488b762ef39250aad26af527301a1f03 680 Pfam PF00361 Proton-conducting membrane transporter 140 434 6.0E-86 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06445 488b762ef39250aad26af527301a1f03 680 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 71 128 2.0E-25 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06445 488b762ef39250aad26af527301a1f03 680 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 6 675 1.3E-241 T 11-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 91 111 7.4E-14 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 277 299 7.4E-14 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 495 516 7.4E-14 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 431 453 7.4E-14 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT56_06445 488b762ef39250aad26af527301a1f03 680 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 65 89 7.4E-14 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 APT56_25755 42cc12fd46e56f740270f9489d183d38 354 Gene3D G3DSA:3.40.190.290 91 294 4.7E-65 T 11-10-2018 APT56_25755 42cc12fd46e56f740270f9489d183d38 354 Gene3D G3DSA:1.10.10.10 3 88 5.6E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25755 42cc12fd46e56f740270f9489d183d38 354 Pfam PF03466 LysR substrate binding domain 90 294 1.4E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_25755 42cc12fd46e56f740270f9489d183d38 354 SUPERFAMILY SSF53850 90 297 1.61E-43 T 11-10-2018 APT56_25755 42cc12fd46e56f740270f9489d183d38 354 SUPERFAMILY SSF46785 4 84 1.31E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25755 42cc12fd46e56f740270f9489d183d38 354 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16585 d050005d41bb9d6387a580867c8fb344 407 SUPERFAMILY SSF103473 14 394 3.01E-50 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_16585 d050005d41bb9d6387a580867c8fb344 407 Gene3D G3DSA:1.20.1250.20 20 395 1.4E-43 T 11-10-2018 APT56_16585 d050005d41bb9d6387a580867c8fb344 407 Pfam PF07690 Major Facilitator Superfamily 31 362 4.9E-36 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_07325 7a93a88b09ef7afd06dedbb9f2c1a0b5 254 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 24 250 3.9E-76 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase APT56_07325 7a93a88b09ef7afd06dedbb9f2c1a0b5 254 SUPERFAMILY SSF64438 11 252 8.97E-77 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic APT56_07325 7a93a88b09ef7afd06dedbb9f2c1a0b5 254 Gene3D G3DSA:3.60.140.10 5 253 1.2E-84 T 11-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily APT56_07325 7a93a88b09ef7afd06dedbb9f2c1a0b5 254 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 32 251 3.1E-49 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 SUPERFAMILY SSF47323 444 566 4.64E-37 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 13 566 2.1E-126 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 Gene3D G3DSA:3.40.50.620 126 443 9.1E-155 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 SUPERFAMILY SSF52374 123 459 7.24E-83 T 11-10-2018 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 Pfam PF05746 DALR anticodon binding domain 449 566 1.2E-34 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 13 97 1.1E-22 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 SMART SM01016 7 98 5.3E-35 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 126 141 4.6E-23 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 165 178 4.6E-23 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 141 157 4.6E-23 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 316 337 4.6E-23 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 Gene3D G3DSA:1.10.730.10 444 566 9.1E-155 T 11-10-2018 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 Pfam PF00750 tRNA synthetases class I (R) 109 411 3.0E-22 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 136 145 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 SUPERFAMILY SSF55190 9 118 3.14E-21 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 Hamap MF_00123 Arginine--tRNA ligase [argS]. 11 566 25.41 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 Gene3D G3DSA:3.30.1360.70 5 116 1.7E-23 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 APT56_00905 fed70073a9b90d70308b4d9c77a008f3 566 SMART SM00836 449 566 1.7E-52 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APT56_12970 0b0a210966398d5f0cfde46353f2387c 346 SUPERFAMILY SSF53850 32 262 1.19E-45 T 11-10-2018 APT56_12970 0b0a210966398d5f0cfde46353f2387c 346 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 260 5.1E-27 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_12970 0b0a210966398d5f0cfde46353f2387c 346 SMART SM00062 41 271 7.1E-42 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_12970 0b0a210966398d5f0cfde46353f2387c 346 Gene3D G3DSA:3.40.190.10 133 229 1.1E-49 T 11-10-2018 APT56_12970 0b0a210966398d5f0cfde46353f2387c 346 Gene3D G3DSA:3.40.190.10 31 261 1.1E-49 T 11-10-2018 APT56_07550 b3b8db03f0181307c6d5e7384f653a0c 373 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 13 369 7.1E-103 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT56_07550 b3b8db03f0181307c6d5e7384f653a0c 373 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 9 371 60.438 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT56_07550 b3b8db03f0181307c6d5e7384f653a0c 373 Pfam PF00155 Aminotransferase class I and II 40 361 1.4E-50 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_07550 b3b8db03f0181307c6d5e7384f653a0c 373 Gene3D G3DSA:3.40.640.10 52 280 2.0E-110 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_07550 b3b8db03f0181307c6d5e7384f653a0c 373 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 232 241 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 APT56_07550 b3b8db03f0181307c6d5e7384f653a0c 373 Gene3D G3DSA:3.90.1150.10 18 364 2.0E-110 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_07550 b3b8db03f0181307c6d5e7384f653a0c 373 SUPERFAMILY SSF53383 19 370 3.2E-80 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_19500 5142ca004972da91e45c5c7f55fdff6f 200 SUPERFAMILY SSF52317 58 198 2.7E-5 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_07690 3e5262f9f46b81ed0bc7f77c968b76e7 249 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 25 234 1.3E-49 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 APT56_07690 3e5262f9f46b81ed0bc7f77c968b76e7 249 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 209 3.4E-41 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 APT56_07690 3e5262f9f46b81ed0bc7f77c968b76e7 249 Gene3D G3DSA:3.40.50.620 13 246 1.5E-67 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_07690 3e5262f9f46b81ed0bc7f77c968b76e7 249 PIRSF PIRSF000857 7 239 1.0E-77 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 APT56_07690 3e5262f9f46b81ed0bc7f77c968b76e7 249 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 40 233 5.9E-82 T 11-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 APT56_07690 3e5262f9f46b81ed0bc7f77c968b76e7 249 SUPERFAMILY SSF52402 15 197 4.57E-47 T 11-10-2018 APT56_02000 b18abaab692d351c98ab4e7b8b18dd26 214 Gene3D G3DSA:3.40.30.10 10 206 3.2E-58 T 11-10-2018 APT56_02000 b18abaab692d351c98ab4e7b8b18dd26 214 PIRSF PIRSF006386 5 213 1.4E-58 T 11-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 APT56_02000 b18abaab692d351c98ab4e7b8b18dd26 214 SUPERFAMILY SSF52833 9 200 2.64E-41 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_02000 b18abaab692d351c98ab4e7b8b18dd26 214 Pfam PF01323 DSBA-like thioredoxin domain 11 196 4.7E-40 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 APT56_07840 77f3387d26194c61696b770f9d679d4b 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 81 1.1E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_07840 77f3387d26194c61696b770f9d679d4b 214 SUPERFAMILY SSF47616 82 213 1.53E-33 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_07840 77f3387d26194c61696b770f9d679d4b 214 Gene3D G3DSA:1.20.1050.10 89 214 3.0E-54 T 11-10-2018 APT56_07840 77f3387d26194c61696b770f9d679d4b 214 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 213 2.1E-92 T 11-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 APT56_07840 77f3387d26194c61696b770f9d679d4b 214 SUPERFAMILY SSF52833 1 86 9.97E-25 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_07840 77f3387d26194c61696b770f9d679d4b 214 Gene3D G3DSA:3.40.30.10 1 88 1.2E-27 T 11-10-2018 APT56_07840 77f3387d26194c61696b770f9d679d4b 214 Pfam PF13410 Glutathione S-transferase, C-terminal domain 136 176 2.9E-6 T 11-10-2018 APT56_17525 eb8e345b1f6806494a650a502c5691e2 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 233 3.1E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_17525 eb8e345b1f6806494a650a502c5691e2 237 SUPERFAMILY SSF52172 4 130 6.69E-39 T 11-10-2018 IPR011006 CheY-like superfamily APT56_17525 eb8e345b1f6806494a650a502c5691e2 237 SUPERFAMILY SSF46894 133 233 2.16E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_17525 eb8e345b1f6806494a650a502c5691e2 237 Gene3D G3DSA:3.40.50.2300 5 128 3.3E-33 T 11-10-2018 APT56_17525 eb8e345b1f6806494a650a502c5691e2 237 SMART SM00448 10 120 4.5E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17525 eb8e345b1f6806494a650a502c5691e2 237 Gene3D G3DSA:1.10.10.10 129 236 4.3E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17525 eb8e345b1f6806494a650a502c5691e2 237 Pfam PF00072 Response regulator receiver domain 12 120 1.4E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17525 eb8e345b1f6806494a650a502c5691e2 237 SMART SM00862 156 233 2.7E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 Pfam PF00459 Inositol monophosphatase family 2 249 2.2E-60 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 7.8E-17 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR01959 SuhB family inositol monophosphatase signature 196 208 7.8E-17 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 7.8E-17 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 Gene3D G3DSA:3.40.190.80 141 259 2.5E-31 T 11-10-2018 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 209 223 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 Gene3D G3DSA:3.30.540.10 1 140 6.2E-51 T 11-10-2018 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 7.7E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 7.7E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 7.7E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 175 196 7.7E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 206 230 7.7E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 7.7E-56 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 SUPERFAMILY SSF56655 1 258 7.46E-82 T 11-10-2018 APT56_20285 e1ffbdaf6f571ab4d7c7fcb4dbc6d1e2 261 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site APT56_13415 ff5b71681957720c53d289836daee0b8 266 Pfam PF03649 Uncharacterised protein family (UPF0014) 9 250 7.7E-75 T 11-10-2018 IPR005226 UPF0014 family APT56_13415 ff5b71681957720c53d289836daee0b8 266 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 8 251 6.1E-54 T 11-10-2018 IPR005226 UPF0014 family APT56_14665 32a6d773b4467a2f9f85663f0c53d00b 387 Pfam PF00544 Pectate lyase 85 256 1.8E-22 T 11-10-2018 IPR002022 Pectate lyase APT56_14665 32a6d773b4467a2f9f85663f0c53d00b 387 Gene3D G3DSA:2.160.20.10 22 298 2.5E-73 T 11-10-2018 IPR012334 Pectin lyase fold APT56_14665 32a6d773b4467a2f9f85663f0c53d00b 387 PRINTS PR00807 Pollen allergen Amb family signature 29 46 7.6E-11 T 11-10-2018 IPR018082 AmbAllergen KEGG: 00040+4.2.2.2 APT56_14665 32a6d773b4467a2f9f85663f0c53d00b 387 PRINTS PR00807 Pollen allergen Amb family signature 217 236 7.6E-11 T 11-10-2018 IPR018082 AmbAllergen KEGG: 00040+4.2.2.2 APT56_14665 32a6d773b4467a2f9f85663f0c53d00b 387 PRINTS PR00807 Pollen allergen Amb family signature 239 258 7.6E-11 T 11-10-2018 IPR018082 AmbAllergen KEGG: 00040+4.2.2.2 APT56_14665 32a6d773b4467a2f9f85663f0c53d00b 387 PRINTS PR00807 Pollen allergen Amb family signature 86 102 7.6E-11 T 11-10-2018 IPR018082 AmbAllergen KEGG: 00040+4.2.2.2 APT56_14665 32a6d773b4467a2f9f85663f0c53d00b 387 SUPERFAMILY SSF51126 29 267 4.13E-60 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14665 32a6d773b4467a2f9f85663f0c53d00b 387 SMART SM00656 53 262 2.8E-19 T 11-10-2018 IPR002022 Pectate lyase APT56_02140 5faffdfa9afe74598a3e7b88c5c446a7 518 Gene3D G3DSA:2.60.120.600 367 518 2.0E-41 T 11-10-2018 IPR037049 Domain of unknown function DUF1214, C-terminal domain superfamily APT56_02140 5faffdfa9afe74598a3e7b88c5c446a7 518 Pfam PF06742 Protein of unknown function (DUF1214) 394 502 4.5E-35 T 11-10-2018 IPR010621 Domain of unknown function DUF1214 APT56_02140 5faffdfa9afe74598a3e7b88c5c446a7 518 Pfam PF06863 Protein of unknown function (DUF1254) 96 226 1.8E-36 T 11-10-2018 IPR010679 Domain of unknown function DUF1254 APT56_02140 5faffdfa9afe74598a3e7b88c5c446a7 518 SUPERFAMILY SSF160935 47 516 9.42E-112 T 11-10-2018 APT56_12605 c1db13dc11f36d6375aa6595f55b9275 252 SMART SM00346 5 95 1.6E-4 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_12605 c1db13dc11f36d6375aa6595f55b9275 252 Gene3D G3DSA:1.10.10.10 4 77 1.1E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12605 c1db13dc11f36d6375aa6595f55b9275 252 SUPERFAMILY SSF55781 80 244 5.89E-48 T 11-10-2018 APT56_12605 c1db13dc11f36d6375aa6595f55b9275 252 SUPERFAMILY SSF46785 8 73 7.7E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12605 c1db13dc11f36d6375aa6595f55b9275 252 Gene3D G3DSA:3.30.450.40 80 249 4.9E-52 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_12605 c1db13dc11f36d6375aa6595f55b9275 252 Pfam PF09339 IclR helix-turn-helix domain 8 57 2.1E-10 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_12605 c1db13dc11f36d6375aa6595f55b9275 252 Pfam PF01614 Bacterial transcriptional regulator 124 244 3.4E-29 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_16745 13d00148355e5c735761c2a97350c932 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16745 13d00148355e5c735761c2a97350c932 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16745 13d00148355e5c735761c2a97350c932 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16745 13d00148355e5c735761c2a97350c932 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.9E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16745 13d00148355e5c735761c2a97350c932 296 SUPERFAMILY SSF53850 87 294 4.62E-38 T 11-10-2018 APT56_16745 13d00148355e5c735761c2a97350c932 296 Gene3D G3DSA:3.40.190.10 162 267 1.6E-55 T 11-10-2018 APT56_16745 13d00148355e5c735761c2a97350c932 296 Gene3D G3DSA:3.40.190.10 91 285 1.6E-55 T 11-10-2018 APT56_16745 13d00148355e5c735761c2a97350c932 296 SUPERFAMILY SSF46785 1 85 7.4E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16745 13d00148355e5c735761c2a97350c932 296 Pfam PF03466 LysR substrate binding domain 87 292 2.5E-41 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16745 13d00148355e5c735761c2a97350c932 296 Gene3D G3DSA:1.10.10.10 1 90 7.8E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23985 96b0803b98334fd40fae88138710e440 356 PIRSF PIRSF005508 3 355 1.2E-116 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 APT56_23985 96b0803b98334fd40fae88138710e440 356 Pfam PF01758 Sodium Bile acid symporter family 60 253 2.2E-35 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 APT56_23985 96b0803b98334fd40fae88138710e440 356 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 14 341 3.4E-117 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 APT56_23985 96b0803b98334fd40fae88138710e440 356 Gene3D G3DSA:1.20.1530.20 12 343 1.2E-18 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APT56_06630 13406647f692ebf7495b311856ebe91e 404 SUPERFAMILY SSF53822 32 402 3.53E-90 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_06630 13406647f692ebf7495b311856ebe91e 404 Gene3D G3DSA:3.40.50.2300 151 282 6.4E-114 T 11-10-2018 APT56_06630 13406647f692ebf7495b311856ebe91e 404 Gene3D G3DSA:3.40.50.2300 32 333 6.4E-114 T 11-10-2018 APT56_06630 13406647f692ebf7495b311856ebe91e 404 Pfam PF13458 Periplasmic binding protein 32 367 4.9E-90 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_06625 b53e3f3999c91a760c183c248dafb178 295 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 283 4.7E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_27515 25ec4ef313c45521b8514ebe4f198ce2 724 SUPERFAMILY SSF51645 4 721 1.19E-303 T 11-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 APT56_27515 25ec4ef313c45521b8514ebe4f198ce2 724 Gene3D G3DSA:1.20.1220.12 583 724 2.5E-72 T 11-10-2018 APT56_27515 25ec4ef313c45521b8514ebe4f198ce2 724 Hamap MF_00641 Malate synthase G [glcB]. 1 724 405.868 T 11-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 APT56_27515 25ec4ef313c45521b8514ebe4f198ce2 724 Pfam PF01274 Malate synthase 18 696 5.1E-177 T 11-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 APT56_27515 25ec4ef313c45521b8514ebe4f198ce2 724 Gene3D G3DSA:3.20.20.360 10 580 8.5E-283 T 11-10-2018 APT56_27515 25ec4ef313c45521b8514ebe4f198ce2 724 Gene3D G3DSA:2.170.170.11 135 262 8.5E-283 T 11-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 APT56_27515 25ec4ef313c45521b8514ebe4f198ce2 724 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 722 0.0 T 11-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 APT56_26345 80508bce6ab5314d4d6306883da3f885 149 SMART SM00530 7 61 8.6E-12 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_26345 80508bce6ab5314d4d6306883da3f885 149 Pfam PF01381 Helix-turn-helix 8 61 3.2E-11 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_26345 80508bce6ab5314d4d6306883da3f885 149 SUPERFAMILY SSF47413 2 68 9.65E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_26345 80508bce6ab5314d4d6306883da3f885 149 Gene3D G3DSA:1.10.260.40 1 69 1.6E-19 T 11-10-2018 APT56_11985 333a8a6201c3ea0e4a8b06146b1336ea 139 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site APT56_11985 333a8a6201c3ea0e4a8b06146b1336ea 139 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 138 7.6E-54 T 11-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 APT56_11985 333a8a6201c3ea0e4a8b06146b1336ea 139 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 91 135 1.0E-14 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain APT56_11985 333a8a6201c3ea0e4a8b06146b1336ea 139 Pfam PF00460 Flagella basal body rod protein 7 37 1.2E-9 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 APT56_22490 6495892078454e2347eb11fc4ba8fd4d 88 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 2.6E-29 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 APT56_22490 6495892078454e2347eb11fc4ba8fd4d 88 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 1.6E-21 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 APT56_22490 6495892078454e2347eb11fc4ba8fd4d 88 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 25.526 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 APT56_22490 6495892078454e2347eb11fc4ba8fd4d 88 SMART SM00316 4 72 0.0038 T 11-10-2018 IPR022967 RNA-binding domain, S1 APT56_22490 6495892078454e2347eb11fc4ba8fd4d 88 Gene3D G3DSA:2.40.50.140 1 72 4.5E-30 T 11-10-2018 APT56_22490 6495892078454e2347eb11fc4ba8fd4d 88 SUPERFAMILY SSF50249 1 71 1.94E-23 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_17170 b004e91666e53eb68fff4d70d4e1ebf4 332 Pfam PF13387 Domain of unknown function (DUF4105) 117 267 7.4E-39 T 11-10-2018 IPR025178 Domain of unknown function DUF4105 APT56_23020 ddf9c0a988b9f2b1ffd21a0aa70e69b5 466 Pfam PF07394 Protein of unknown function (DUF1501) 44 401 1.5E-46 T 11-10-2018 IPR010869 Protein of unknown function DUF1501 APT56_17930 23b67bba5fcec085e9e69aaac58bdd73 162 Gene3D G3DSA:1.10.10.10 79 162 1.0E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17930 23b67bba5fcec085e9e69aaac58bdd73 162 Pfam PF08281 Sigma-70, region 4 105 156 1.2E-8 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_17930 23b67bba5fcec085e9e69aaac58bdd73 162 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 4 157 7.9E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_17930 23b67bba5fcec085e9e69aaac58bdd73 162 SUPERFAMILY SSF88946 5 84 3.45E-14 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_17930 23b67bba5fcec085e9e69aaac58bdd73 162 Pfam PF04542 Sigma-70 region 2 8 73 2.0E-8 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_17930 23b67bba5fcec085e9e69aaac58bdd73 162 Gene3D G3DSA:1.10.1740.10 2 75 6.7E-8 T 11-10-2018 APT56_17930 23b67bba5fcec085e9e69aaac58bdd73 162 SUPERFAMILY SSF88659 90 160 5.23E-10 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 Pfam PF00347 Ribosomal protein L6 90 164 6.4E-18 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 Pfam PF00347 Ribosomal protein L6 12 82 5.2E-17 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 11-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 Gene3D G3DSA:3.90.930.12 83 177 2.8E-38 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 SUPERFAMILY SSF56053 83 177 2.09E-34 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 SUPERFAMILY SSF56053 1 82 6.72E-24 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.8E-72 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.5E-31 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.5E-31 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.5E-31 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 Gene3D G3DSA:3.90.930.12 1 82 3.3E-27 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 35.705 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT56_27715 ac17cef369c63c9e72b624f6218c81b7 177 PIRSF PIRSF002162 1 177 2.5E-49 T 11-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_11975 6dd60ef24e6fbc3fa0c175f593de7682 237 Pfam PF13144 Chaperone for flagella basal body P-ring formation 41 235 1.5E-45 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal APT56_11975 6dd60ef24e6fbc3fa0c175f593de7682 237 SMART SM00858 113 175 2.1E-9 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_11975 6dd60ef24e6fbc3fa0c175f593de7682 237 Gene3D G3DSA:2.30.30.760 178 237 9.6E-20 T 11-10-2018 APT56_11975 6dd60ef24e6fbc3fa0c175f593de7682 237 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 101 236 2.0E-37 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal APT56_07410 2469f653ff9c162ef479dc5587764086 761 Gene3D G3DSA:3.40.50.300 499 757 3.2E-96 T 11-10-2018 APT56_07410 2469f653ff9c162ef479dc5587764086 761 SUPERFAMILY SSF90123 172 486 4.84E-77 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_07410 2469f653ff9c162ef479dc5587764086 761 SMART SM00382 531 723 6.5E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_07410 2469f653ff9c162ef479dc5587764086 761 Pfam PF00664 ABC transporter transmembrane region 185 457 3.7E-44 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_07410 2469f653ff9c162ef479dc5587764086 761 Gene3D G3DSA:1.20.1560.10 151 493 3.0E-87 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_07410 2469f653ff9c162ef479dc5587764086 761 SUPERFAMILY SSF52540 496 741 2.97E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07410 2469f653ff9c162ef479dc5587764086 761 ProSitePatterns PS00211 ABC transporters family signature. 643 657 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_07410 2469f653ff9c162ef479dc5587764086 761 Pfam PF00005 ABC transporter 524 671 9.0E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04780 bbb8e04e00c3f407d6821d4641e042b7 396 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 393 5.2E-24 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_04780 bbb8e04e00c3f407d6821d4641e042b7 396 SUPERFAMILY SSF47203 231 396 2.23E-22 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_04780 bbb8e04e00c3f407d6821d4641e042b7 396 Gene3D G3DSA:1.10.540.10 2 119 8.1E-25 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_04780 bbb8e04e00c3f407d6821d4641e042b7 396 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 2.5E-17 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_04780 bbb8e04e00c3f407d6821d4641e042b7 396 SUPERFAMILY SSF56645 2 244 4.58E-76 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_04780 bbb8e04e00c3f407d6821d4641e042b7 396 Gene3D G3DSA:2.40.110.10 125 234 9.3E-39 T 11-10-2018 APT56_04780 bbb8e04e00c3f407d6821d4641e042b7 396 Gene3D G3DSA:1.20.140.10 235 396 3.0E-37 T 11-10-2018 APT56_04780 bbb8e04e00c3f407d6821d4641e042b7 396 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 211 9.4E-23 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_23205 eec8e76adedf627fa141de3d5bdadabc 230 Gene3D G3DSA:1.10.10.10 1 64 7.6E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23205 eec8e76adedf627fa141de3d5bdadabc 230 SUPERFAMILY SSF46785 1 62 7.55E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23205 eec8e76adedf627fa141de3d5bdadabc 230 Pfam PF08279 HTH domain 6 59 1.2E-15 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 APT56_23205 eec8e76adedf627fa141de3d5bdadabc 230 Pfam PF13280 WYL domain 138 212 2.6E-12 T 11-10-2018 IPR026881 WYL domain APT56_17060 27b1e274b34c1f881df0be666116c61d 214 SMART SM00903 19 171 1.1E-27 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_17060 27b1e274b34c1f881df0be666116c61d 214 Gene3D G3DSA:2.30.110.10 1 208 4.3E-64 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_17060 27b1e274b34c1f881df0be666116c61d 214 SUPERFAMILY SSF50475 2 197 5.4E-44 T 11-10-2018 APT56_17060 27b1e274b34c1f881df0be666116c61d 214 Pfam PF01613 Flavin reductase like domain 22 163 1.1E-24 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_16925 0847a16ed8583b6bf14c778488a64a59 334 SMART SM00342 243 326 5.5E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_16925 0847a16ed8583b6bf14c778488a64a59 334 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 295 310 2.7E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_16925 0847a16ed8583b6bf14c778488a64a59 334 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 310 326 2.7E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_16925 0847a16ed8583b6bf14c778488a64a59 334 SUPERFAMILY SSF46689 280 328 4.48E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_16925 0847a16ed8583b6bf14c778488a64a59 334 Pfam PF12833 Helix-turn-helix domain 249 328 1.0E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_16925 0847a16ed8583b6bf14c778488a64a59 334 SUPERFAMILY SSF46689 226 274 4.75E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_16925 0847a16ed8583b6bf14c778488a64a59 334 Gene3D G3DSA:1.10.10.60 225 330 1.4E-24 T 11-10-2018 APT56_27065 f38d0cf5f9cfa26c3246048da133e988 332 Gene3D G3DSA:3.40.190.10 131 254 9.1E-102 T 11-10-2018 APT56_27065 f38d0cf5f9cfa26c3246048da133e988 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 328 3.0E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_27065 f38d0cf5f9cfa26c3246048da133e988 332 PIRSF PIRSF017082 2 332 4.7E-79 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_27065 f38d0cf5f9cfa26c3246048da133e988 332 SUPERFAMILY SSF53850 120 289 3.44E-9 T 11-10-2018 APT56_27065 f38d0cf5f9cfa26c3246048da133e988 332 Gene3D G3DSA:3.40.190.150 34 322 9.1E-102 T 11-10-2018 APT56_02430 b78919d49977e0f96d48d78fe2c40618 304 Gene3D G3DSA:3.40.190.10 219 270 2.0E-6 T 11-10-2018 APT56_02430 b78919d49977e0f96d48d78fe2c40618 304 SUPERFAMILY SSF46785 3 85 3.95E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02430 b78919d49977e0f96d48d78fe2c40618 304 Pfam PF03466 LysR substrate binding domain 90 298 9.1E-23 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_02430 b78919d49977e0f96d48d78fe2c40618 304 Gene3D G3DSA:3.40.190.10 84 184 2.1E-7 T 11-10-2018 APT56_02430 b78919d49977e0f96d48d78fe2c40618 304 Gene3D G3DSA:1.10.10.10 2 83 1.5E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02430 b78919d49977e0f96d48d78fe2c40618 304 SUPERFAMILY SSF53850 92 293 1.63E-20 T 11-10-2018 APT56_02430 b78919d49977e0f96d48d78fe2c40618 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14220 21672c0dbefc1dc298dd81562785bf17 408 TIGRFAM TIGR00937 2A51: chromate efflux transporter 25 401 6.5E-98 T 11-10-2018 IPR014047 Chromate transporter, long chain APT56_14220 21672c0dbefc1dc298dd81562785bf17 408 Pfam PF02417 Chromate transporter 239 402 1.2E-33 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT56_14220 21672c0dbefc1dc298dd81562785bf17 408 Pfam PF02417 Chromate transporter 20 184 9.4E-34 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT56_14220 21672c0dbefc1dc298dd81562785bf17 408 PIRSF PIRSF004810 2 408 1.6E-119 T 11-10-2018 IPR014047 Chromate transporter, long chain APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 SUPERFAMILY SSF48452 35 151 1.31E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 28 51 5.8E-22 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 77 99 5.8E-22 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 109 131 5.8E-22 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 53 72 5.8E-22 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 Pfam PF07720 Tetratricopeptide repeat 43 73 3.1E-4 T 11-10-2018 IPR011716 Tetratricopeptide TPR-3 APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 26 157 1.4E-36 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 Gene3D G3DSA:1.25.40.10 18 165 2.0E-41 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 SMART SM00028 110 143 57.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 SMART SM00028 76 109 15.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_03710 c79f3aaf0b5a4d107d33fdd2647f3d3f 167 SMART SM00028 42 75 33.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 SUPERFAMILY SSF51735 169 394 1.56E-34 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 Pfam PF00106 short chain dehydrogenase 171 360 2.5E-23 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 36 68 7.2E-13 T 11-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 SUPERFAMILY SSF50249 37 132 3.94E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 241 252 4.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 4.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 342 359 4.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 321 340 4.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 Gene3D G3DSA:3.40.50.720 151 404 1.1E-35 T 11-10-2018 APT56_05095 151ac8b042b7ffbeeec8245fce3fea63 413 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 72 131 1.3E-6 T 11-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal APT56_05510 3f7998e54cdc81c5642ee9e00bddf588 159 Gene3D G3DSA:1.20.1290.10 1 148 1.9E-43 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_05510 3f7998e54cdc81c5642ee9e00bddf588 159 Pfam PF02627 Carboxymuconolactone decarboxylase family 35 94 9.7E-16 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_05510 3f7998e54cdc81c5642ee9e00bddf588 159 SUPERFAMILY SSF69118 4 145 7.09E-40 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_05510 3f7998e54cdc81c5642ee9e00bddf588 159 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 36 78 9.3E-13 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 SUPERFAMILY SSF63380 3 107 8.98E-28 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 276 349 9.5E-16 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 6 359 2.2E-142 T 11-10-2018 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 118 137 4.3E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 143 152 4.3E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 155 166 4.3E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 57 64 4.3E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 SUPERFAMILY SSF54292 237 359 2.83E-28 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 SUPERFAMILY SSF52343 96 244 1.7E-32 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 PRINTS PR00406 Cytochrome B5 reductase signature 155 166 2.7E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 PRINTS PR00406 Cytochrome B5 reductase signature 214 222 2.7E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 PRINTS PR00406 Cytochrome B5 reductase signature 93 107 2.7E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 PRINTS PR00406 Cytochrome B5 reductase signature 118 137 2.7E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 Pfam PF00970 Oxidoreductase FAD-binding domain 9 105 9.0E-13 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 Gene3D G3DSA:2.40.30.10 4 107 3.2E-25 T 11-10-2018 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 Gene3D G3DSA:3.40.50.80 111 249 4.1E-29 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 Gene3D G3DSA:3.10.20.30 255 362 1.9E-28 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 307 315 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT56_07775 93480f9cdd60c28d840309ea57429d3c 362 Pfam PF00175 Oxidoreductase NAD-binding domain 121 227 5.2E-17 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_24010 ac79683c6ebb6dd89b56998690a7733c 308 Pfam PF00892 EamA-like transporter family 12 142 2.9E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_24010 ac79683c6ebb6dd89b56998690a7733c 308 Pfam PF00892 EamA-like transporter family 158 296 2.5E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_24010 ac79683c6ebb6dd89b56998690a7733c 308 SUPERFAMILY SSF103481 41 147 1.15E-12 T 11-10-2018 APT56_24010 ac79683c6ebb6dd89b56998690a7733c 308 SUPERFAMILY SSF103481 211 302 4.18E-12 T 11-10-2018 APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 Gene3D G3DSA:3.40.50.720 2 260 1.3E-88 T 11-10-2018 APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 SUPERFAMILY SSF51735 13 258 3.38E-86 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 230 1.1E-4 T 11-10-2018 APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 9.4E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 9.4E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 9.4E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 9.4E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 9.4E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 9.4E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 5.0E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 5.0E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 5.0E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25860 0dcc169ea56905e2d9d8f65016acc57f 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 257 4.1E-71 T 11-10-2018 APT56_13085 52b05e0f038b5c6f8296249da90e069d 385 ProDom PD119415 TRANSGLUTAMINASE TRANSFERASE ACYLTRANSFERASE GAMMA-GLUTAMYLTRANSFERASE PROTEIN-GLUTAMINE TGASE SPORULATION TGL 87 274 1.0E-4 T 11-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 APT56_04725 0594c945c079f38dd79c1592adf5617c 412 Gene3D G3DSA:3.40.50.10540 7 402 3.1E-143 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_04725 0594c945c079f38dd79c1592adf5617c 412 Pfam PF02515 CoA-transferase family III 7 385 3.8E-131 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_04725 0594c945c079f38dd79c1592adf5617c 412 SUPERFAMILY SSF89796 5 405 8.63E-143 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_04725 0594c945c079f38dd79c1592adf5617c 412 Gene3D G3DSA:3.30.1540.10 245 336 3.1E-143 T 11-10-2018 APT56_13765 439b44821299a61971e8537904296491 793 SUPERFAMILY SSF52317 640 754 3.58E-20 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_13765 439b44821299a61971e8537904296491 793 PRINTS PR00067 Catalase signature 240 258 6.6E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 PRINTS PR00067 Catalase signature 409 436 6.6E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 PRINTS PR00067 Catalase signature 200 218 6.6E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 PRINTS PR00067 Catalase signature 221 238 6.6E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 PRINTS PR00067 Catalase signature 441 467 6.6E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 PRINTS PR00067 Catalase signature 137 160 6.6E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 Pfam PF01965 DJ-1/PfpI family 641 754 1.5E-13 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_13765 439b44821299a61971e8537904296491 793 Gene3D G3DSA:2.40.180.10 51 532 7.2E-207 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 APT56_13765 439b44821299a61971e8537904296491 793 Gene3D G3DSA:1.20.1370.20 536 638 8.1E-33 T 11-10-2018 APT56_13765 439b44821299a61971e8537904296491 793 SMART SM01060 124 512 1.7E-277 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 Pfam PF06628 Catalase-related immune-responsive 538 601 1.4E-19 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 ProSitePatterns PS00438 Catalase proximal active site signature. 160 176 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 Pfam PF00199 Catalase 124 508 1.2E-179 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 SUPERFAMILY SSF56634 104 621 9.55E-220 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_13765 439b44821299a61971e8537904296491 793 Gene3D G3DSA:3.40.50.880 640 791 9.1E-37 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_13765 439b44821299a61971e8537904296491 793 PIRSF PIRSF038927 89 792 0.0 T 11-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 Gene3D G3DSA:3.40.50.11610 735 942 1.3E-167 T 11-10-2018 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 803 945 6.1E-50 T 11-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 Gene3D G3DSA:3.40.50.970 173 534 1.0E-147 T 11-10-2018 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 10 48 1.0E-17 T 11-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 SMART SM00861 601 798 5.7E-57 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 SUPERFAMILY SSF52518 585 804 1.18E-45 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 Pfam PF02779 Transketolase, pyrimidine binding domain 601 798 1.3E-63 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 SUPERFAMILY SSF52518 126 551 1.32E-89 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 Gene3D G3DSA:3.40.50.12470 564 814 1.3E-167 T 11-10-2018 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 Gene3D G3DSA:1.10.287.1150 89 172 7.3E-24 T 11-10-2018 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 13 944 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 PIRSF PIRSF000157 1 947 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 APT56_07240 2b7b699bcb81dccbb8f8de3f2621d1ef 955 Pfam PF00676 Dehydrogenase E1 component 221 525 7.9E-49 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 APT56_08060 64733ead40fb50b3237217407c5ab32c 303 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 92 108 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site APT56_08060 64733ead40fb50b3237217407c5ab32c 303 Gene3D G3DSA:1.10.600.10 9 303 5.6E-91 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APT56_08060 64733ead40fb50b3237217407c5ab32c 303 Pfam PF00348 Polyprenyl synthetase 36 266 1.4E-52 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 APT56_08060 64733ead40fb50b3237217407c5ab32c 303 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site APT56_08060 64733ead40fb50b3237217407c5ab32c 303 SUPERFAMILY SSF48576 8 294 2.4E-82 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APT56_23200 8066d5cc11d124c27bf6f76cba2b475b 320 SUPERFAMILY SSF53474 65 317 6.39E-26 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_23200 8066d5cc11d124c27bf6f76cba2b475b 320 Gene3D G3DSA:3.40.50.1820 5 318 1.9E-88 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_12435 7113f0b6a51f84a9329663b3e8f5bb5e 207 Pfam PF02223 Thymidylate kinase 10 191 4.4E-45 T 11-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 APT56_12435 7113f0b6a51f84a9329663b3e8f5bb5e 207 Hamap MF_00165 Thymidylate kinase [tmk]. 6 203 28.392 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 APT56_12435 7113f0b6a51f84a9329663b3e8f5bb5e 207 SUPERFAMILY SSF52540 1 186 1.82E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12435 7113f0b6a51f84a9329663b3e8f5bb5e 207 Gene3D G3DSA:3.40.50.300 2 204 2.3E-61 T 11-10-2018 APT56_12435 7113f0b6a51f84a9329663b3e8f5bb5e 207 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 4 191 4.9E-47 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 APT56_18425 0ad5e9c2ccf115f9253555c5a8580014 441 Gene3D G3DSA:3.50.50.60 1 438 1.6E-24 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_18425 0ad5e9c2ccf115f9253555c5a8580014 441 Pfam PF01593 Flavin containing amine oxidoreductase 11 435 2.2E-27 T 11-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 APT56_18425 0ad5e9c2ccf115f9253555c5a8580014 441 TIGRFAM TIGR03467 HpnE: squalene-associated FAD-dependent desaturase 4 434 4.5E-112 T 11-10-2018 IPR017830 Hydroxysqualene dehydroxylase HpnE MetaCyc: PWY-7072 APT56_18425 0ad5e9c2ccf115f9253555c5a8580014 441 SUPERFAMILY SSF51905 2 435 1.65E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_24720 0d67805d05b94e3153f51d3f304abaf3 498 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 6 482 5.7E-213 T 11-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 APT56_24720 0d67805d05b94e3153f51d3f304abaf3 498 Gene3D G3DSA:3.40.605.10 25 459 6.4E-154 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_24720 0d67805d05b94e3153f51d3f304abaf3 498 Gene3D G3DSA:3.40.309.10 250 451 6.4E-154 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_24720 0d67805d05b94e3153f51d3f304abaf3 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_24720 0d67805d05b94e3153f51d3f304abaf3 498 Pfam PF00171 Aldehyde dehydrogenase family 19 478 6.7E-141 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_24720 0d67805d05b94e3153f51d3f304abaf3 498 SUPERFAMILY SSF53720 3 483 5.63E-152 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_26600 f241c53f9faa5aa4017deb1682237782 565 Pfam PF00005 ABC transporter 358 507 4.4E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_26600 f241c53f9faa5aa4017deb1682237782 565 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 7 536 2.9E-120 T 11-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 APT56_26600 f241c53f9faa5aa4017deb1682237782 565 SMART SM00382 367 555 9.0E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_26600 f241c53f9faa5aa4017deb1682237782 565 Pfam PF00664 ABC transporter transmembrane region 56 274 1.8E-15 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_26600 f241c53f9faa5aa4017deb1682237782 565 SUPERFAMILY SSF90123 7 321 5.62E-41 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_26600 f241c53f9faa5aa4017deb1682237782 565 SUPERFAMILY SSF52540 328 564 1.16E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26600 f241c53f9faa5aa4017deb1682237782 565 ProSitePatterns PS00211 ABC transporters family signature. 479 493 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_26600 f241c53f9faa5aa4017deb1682237782 565 Gene3D G3DSA:1.20.1560.10 1 324 1.7E-31 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_26600 f241c53f9faa5aa4017deb1682237782 565 Gene3D G3DSA:3.40.50.300 325 565 3.2E-62 T 11-10-2018 APT56_11810 859314ee74f455ee27d9614fd61a569d 158 Pfam PF13489 Methyltransferase domain 3 93 5.8E-7 T 11-10-2018 APT56_11810 859314ee74f455ee27d9614fd61a569d 158 Gene3D G3DSA:3.40.50.150 1 153 3.7E-16 T 11-10-2018 APT56_11810 859314ee74f455ee27d9614fd61a569d 158 SUPERFAMILY SSF53335 2 118 4.35E-17 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 Gene3D G3DSA:2.170.130.10 133 240 1.6E-18 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 Gene3D G3DSA:2.40.170.20 258 804 3.2E-67 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 Pfam PF07715 TonB-dependent Receptor Plug Domain 135 233 2.6E-17 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 Pfam PF07660 Secretin and TonB N terminus short domain 57 104 2.7E-8 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 Gene3D G3DSA:3.55.50.30 27 128 9.7E-24 T 11-10-2018 APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 SMART SM00965 57 107 4.2E-11 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 Pfam PF00593 TonB dependent receptor 327 802 2.0E-46 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 136 792 1.9E-115 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_13645 2669804ecfb13b7fa3069e82231f38d8 805 SUPERFAMILY SSF56935 119 805 1.67E-96 T 11-10-2018 APT56_02195 435eec1074f93b9ebb230d1626e091e5 357 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 7 351 4.9E-131 T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APT56_02195 435eec1074f93b9ebb230d1626e091e5 357 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 143 159 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APT56_02195 435eec1074f93b9ebb230d1626e091e5 357 SUPERFAMILY SSF51726 5 354 1.52E-116 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APT56_02195 435eec1074f93b9ebb230d1626e091e5 357 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 8 352 48.623 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APT56_02195 435eec1074f93b9ebb230d1626e091e5 357 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 24 33 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APT56_02195 435eec1074f93b9ebb230d1626e091e5 357 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 11 349 3.1E-126 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APT56_02195 435eec1074f93b9ebb230d1626e091e5 357 Gene3D G3DSA:3.20.20.210 1 357 5.3E-152 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 Gene3D G3DSA:1.10.8.60 167 240 3.0E-7 T 11-10-2018 APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 Gene3D G3DSA:1.10.3710.10 347 446 3.4E-36 T 11-10-2018 APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 19 132 2.0E-12 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 SMART SM00382 51 167 6.5E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 Gene3D G3DSA:1.20.272.10 243 346 2.6E-41 T 11-10-2018 APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 Gene3D G3DSA:3.40.50.300 6 166 1.4E-41 T 11-10-2018 APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 SUPERFAMILY SSF52540 13 237 5.8E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 Pfam PF16193 AAA C-terminal domain 192 268 6.5E-22 T 11-10-2018 IPR032423 AAA C-terminal domain APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 SUPERFAMILY SSF48019 253 434 2.61E-72 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APT56_05800 0fcbb3d31ba36acb54aad1aedd48eac5 446 Pfam PF12002 MgsA AAA+ ATPase C terminal 269 432 4.4E-67 T 11-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 Gene3D G3DSA:1.10.3080.10 29 453 3.8E-75 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 PRINTS PR00762 Chloride channel signature 94 111 4.6E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 PRINTS PR00762 Chloride channel signature 402 421 4.6E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 PRINTS PR00762 Chloride channel signature 184 203 4.6E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 PRINTS PR00762 Chloride channel signature 354 374 4.6E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 PRINTS PR00762 Chloride channel signature 384 400 4.6E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 PRINTS PR00762 Chloride channel signature 128 147 4.6E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 SUPERFAMILY SSF81340 15 449 1.57E-84 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 APT56_18220 971e26545d09e3547fee1ff16ba8d3fc 473 Pfam PF00654 Voltage gated chloride channel 83 434 1.9E-69 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_07980 08dd8d9ac76cb964b9d52d8fac7cb4a4 463 Gene3D G3DSA:3.30.1330.90 11 160 2.8E-52 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 APT56_07980 08dd8d9ac76cb964b9d52d8fac7cb4a4 463 Pfam PF03315 Serine dehydratase beta chain 4 156 9.8E-57 T 11-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 APT56_07980 08dd8d9ac76cb964b9d52d8fac7cb4a4 463 Pfam PF03313 Serine dehydratase alpha chain 187 457 2.0E-104 T 11-10-2018 IPR005130 Serine dehydratase-like, alpha subunit APT56_07980 08dd8d9ac76cb964b9d52d8fac7cb4a4 463 SUPERFAMILY SSF143548 17 157 3.66E-45 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 APT56_07980 08dd8d9ac76cb964b9d52d8fac7cb4a4 463 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 460 8.1E-210 T 11-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 APT56_02845 c2345600b34706fa7033e5ee33e9817b 212 SUPERFAMILY SSF47616 80 209 1.71E-35 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_02845 c2345600b34706fa7033e5ee33e9817b 212 Gene3D G3DSA:1.20.1050.10 88 212 3.4E-52 T 11-10-2018 APT56_02845 c2345600b34706fa7033e5ee33e9817b 212 Gene3D G3DSA:3.40.30.10 1 87 1.4E-24 T 11-10-2018 APT56_02845 c2345600b34706fa7033e5ee33e9817b 212 SUPERFAMILY SSF52833 1 84 2.56E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_02845 c2345600b34706fa7033e5ee33e9817b 212 Pfam PF14497 Glutathione S-transferase, C-terminal domain 117 199 4.0E-8 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_02845 c2345600b34706fa7033e5ee33e9817b 212 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 210 1.8E-84 T 11-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 APT56_02845 c2345600b34706fa7033e5ee33e9817b 212 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 79 1.1E-14 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_18895 7d1ba1ead090bba66c62e024861ba0ee 409 SUPERFAMILY SSF51905 1 404 8.93E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_18895 7d1ba1ead090bba66c62e024861ba0ee 409 Pfam PF01266 FAD dependent oxidoreductase 4 400 3.5E-69 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_18895 7d1ba1ead090bba66c62e024861ba0ee 409 SUPERFAMILY SSF54373 271 363 4.45E-14 T 11-10-2018 APT56_18895 7d1ba1ead090bba66c62e024861ba0ee 409 Gene3D G3DSA:3.30.9.10 133 362 1.4E-52 T 11-10-2018 APT56_18895 7d1ba1ead090bba66c62e024861ba0ee 409 Gene3D G3DSA:3.50.50.60 4 53 5.1E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_18895 7d1ba1ead090bba66c62e024861ba0ee 409 Gene3D G3DSA:3.50.50.60 96 400 1.4E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13480 68757f9d37952198d9ec4546042b4cf3 367 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 175 361 8.1E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13480 68757f9d37952198d9ec4546042b4cf3 367 SUPERFAMILY SSF161098 156 347 1.96E-41 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13480 68757f9d37952198d9ec4546042b4cf3 367 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 157 253 2.1E-18 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_13480 68757f9d37952198d9ec4546042b4cf3 367 Gene3D G3DSA:1.10.3720.10 149 364 6.3E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12580 e7bfa2cb3b0e4297c114b339b9511b8c 482 Gene3D G3DSA:3.40.50.10540 47 209 2.6E-8 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_12580 e7bfa2cb3b0e4297c114b339b9511b8c 482 SUPERFAMILY SSF89796 48 219 5.36E-29 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_12580 e7bfa2cb3b0e4297c114b339b9511b8c 482 SUPERFAMILY SSF89796 225 423 1.7E-54 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_12580 e7bfa2cb3b0e4297c114b339b9511b8c 482 Pfam PF02515 CoA-transferase family III 50 209 1.2E-5 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_12580 e7bfa2cb3b0e4297c114b339b9511b8c 482 Pfam PF02515 CoA-transferase family III 227 418 2.9E-44 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_12580 e7bfa2cb3b0e4297c114b339b9511b8c 482 Gene3D G3DSA:3.30.1540.10 113 204 2.6E-8 T 11-10-2018 APT56_12580 e7bfa2cb3b0e4297c114b339b9511b8c 482 Gene3D G3DSA:3.40.50.10540 222 476 2.1E-58 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_18910 908f21af34b54ddfad67b84f4b4ffae1 506 Pfam PF00155 Aminotransferase class I and II 183 437 8.1E-16 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_18910 908f21af34b54ddfad67b84f4b4ffae1 506 SUPERFAMILY SSF46785 26 95 1.52E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18910 908f21af34b54ddfad67b84f4b4ffae1 506 SUPERFAMILY SSF53383 153 502 7.96E-74 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_18910 908f21af34b54ddfad67b84f4b4ffae1 506 SMART SM00345 34 93 1.1E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_18910 908f21af34b54ddfad67b84f4b4ffae1 506 Pfam PF00392 Bacterial regulatory proteins, gntR family 34 93 1.4E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_18910 908f21af34b54ddfad67b84f4b4ffae1 506 Gene3D G3DSA:3.40.640.10 141 495 9.9E-111 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_18910 908f21af34b54ddfad67b84f4b4ffae1 506 Gene3D G3DSA:1.10.10.10 26 97 2.9E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15535 4f592577008751ec030df088d81db632 113 SUPERFAMILY SSF46785 10 110 1.45E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15535 4f592577008751ec030df088d81db632 113 Gene3D G3DSA:1.10.10.10 2 113 1.8E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15535 4f592577008751ec030df088d81db632 113 Pfam PF12840 Helix-turn-helix domain 18 91 9.0E-16 T 11-10-2018 APT56_15535 4f592577008751ec030df088d81db632 113 SMART SM00418 19 111 1.3E-11 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_21160 00b5c5be9b03eea94cd5bb3442e3f239 358 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 4 353 4.9E-166 T 11-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 APT56_21160 00b5c5be9b03eea94cd5bb3442e3f239 358 Gene3D G3DSA:3.40.718.10 2 357 1.5E-139 T 11-10-2018 APT56_21160 00b5c5be9b03eea94cd5bb3442e3f239 358 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 349 1.3E-84 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT56_21160 00b5c5be9b03eea94cd5bb3442e3f239 358 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 APT56_21160 00b5c5be9b03eea94cd5bb3442e3f239 358 SMART SM01329 6 350 4.3E-173 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT56_21160 00b5c5be9b03eea94cd5bb3442e3f239 358 SUPERFAMILY SSF53659 3 354 1.71E-114 T 11-10-2018 APT56_17295 2fc44386869f0af40f091554dc972ef4 432 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 422 2.2E-95 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_17295 2fc44386869f0af40f091554dc972ef4 432 PIRSF PIRSF006066 1 432 9.6E-119 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_17295 2fc44386869f0af40f091554dc972ef4 432 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 427 2.7E-103 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_05230 6ba7c98126fdb58bc00853368aef729d 413 Pfam PF02515 CoA-transferase family III 17 385 1.5E-107 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_05230 6ba7c98126fdb58bc00853368aef729d 413 Gene3D G3DSA:3.30.1540.10 232 330 7.5E-110 T 11-10-2018 APT56_05230 6ba7c98126fdb58bc00853368aef729d 413 SUPERFAMILY SSF89796 14 409 1.96E-115 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_05230 6ba7c98126fdb58bc00853368aef729d 413 Gene3D G3DSA:3.40.50.10540 16 403 7.5E-110 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_22920 8fd57934e8deee14b02f770ac559b078 278 Gene3D G3DSA:3.40.140.10 130 278 2.4E-50 T 11-10-2018 APT56_22920 8fd57934e8deee14b02f770ac559b078 278 PIRSF PIRSF015626 5 277 6.2E-80 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 APT56_22920 8fd57934e8deee14b02f770ac559b078 278 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 34 275 7.5E-69 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 APT56_22920 8fd57934e8deee14b02f770ac559b078 278 SUPERFAMILY SSF53927 32 274 4.81E-80 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APT56_22920 8fd57934e8deee14b02f770ac559b078 278 Pfam PF02634 FdhD/NarQ family 37 274 1.1E-76 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 APT56_22920 8fd57934e8deee14b02f770ac559b078 278 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 16 275 35.057 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 APT56_22920 8fd57934e8deee14b02f770ac559b078 278 Gene3D G3DSA:3.10.20.10 39 122 9.5E-11 T 11-10-2018 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 SUPERFAMILY SSF58104 264 450 2.22E-45 T 11-10-2018 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 Pfam PF08447 PAS fold 166 251 1.1E-16 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 Pfam PF08447 PAS fold 44 129 1.4E-15 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 Gene3D G3DSA:3.30.450.20 151 252 1.1E-23 T 11-10-2018 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 SUPERFAMILY SSF55785 32 138 6.63E-27 T 11-10-2018 IPR035965 PAS domain superfamily APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 285 438 2.5E-44 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 SMART SM00091 21 89 0.01 T 11-10-2018 IPR000014 PAS domain APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 SMART SM00091 141 211 3.3 T 11-10-2018 IPR000014 PAS domain APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 Gene3D G3DSA:1.10.287.950 253 455 3.6E-48 T 11-10-2018 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 SUPERFAMILY SSF55785 155 255 1.27E-26 T 11-10-2018 IPR035965 PAS domain superfamily APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 264 8.9E-20 T 11-10-2018 IPR000014 PAS domain APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 141 2.0E-19 T 11-10-2018 IPR000014 PAS domain APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 352 381 7.8E-34 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 323 350 7.8E-34 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 429 7.8E-34 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 SMART SM00086 94 136 1.0E-4 T 11-10-2018 IPR001610 PAC motif APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 SMART SM00086 216 258 6.5E-5 T 11-10-2018 IPR001610 PAC motif APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 SMART SM00283 247 464 1.0E-42 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_21670 9080c04fa3c9dad76d314a2b86bd2e68 488 Gene3D G3DSA:3.30.450.20 17 150 1.8E-24 T 11-10-2018 APT56_13655 2340dd490f41970bade398b415bad086 901 Gene3D G3DSA:3.20.20.80 222 368 1.3E-31 T 11-10-2018 APT56_13655 2340dd490f41970bade398b415bad086 901 Gene3D G3DSA:3.20.20.80 670 798 9.3E-34 T 11-10-2018 APT56_13655 2340dd490f41970bade398b415bad086 901 Gene3D G3DSA:3.20.20.80 15 134 6.3E-29 T 11-10-2018 APT56_13655 2340dd490f41970bade398b415bad086 901 Pfam PF00128 Alpha amylase, catalytic domain 36 109 1.1E-14 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13655 2340dd490f41970bade398b415bad086 901 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 15 895 3.1E-279 T 11-10-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 APT56_13655 2340dd490f41970bade398b415bad086 901 SUPERFAMILY SSF51445 15 795 3.98E-119 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_13655 2340dd490f41970bade398b415bad086 901 SMART SM00642 18 454 5.4E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_04745 dc7ad8689110dd6243fafeabc98208fe 327 Gene3D G3DSA:3.40.190.10 129 252 1.0E-110 T 11-10-2018 APT56_04745 dc7ad8689110dd6243fafeabc98208fe 327 SUPERFAMILY SSF53850 113 287 1.42E-15 T 11-10-2018 APT56_04745 dc7ad8689110dd6243fafeabc98208fe 327 PIRSF PIRSF017082 4 326 7.9E-76 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04745 dc7ad8689110dd6243fafeabc98208fe 327 Gene3D G3DSA:3.40.190.150 32 317 1.0E-110 T 11-10-2018 APT56_04745 dc7ad8689110dd6243fafeabc98208fe 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 324 1.1E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_11650 7197e4fe416c8c5a0e51edea99ce1a9d 251 Pfam PF01203 Type II secretion system (T2SS), protein N 42 244 1.3E-20 T 11-10-2018 IPR022792 Type II secretion system, protein N APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 Pfam PF03466 LysR substrate binding domain 88 292 8.7E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.4E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 Gene3D G3DSA:1.10.10.10 1 91 7.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 SUPERFAMILY SSF46785 2 85 6.8E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 Gene3D G3DSA:3.40.190.290 92 293 1.1E-41 T 11-10-2018 APT56_21625 92a52dc2ca2073bf82e09fd6d3dff296 307 SUPERFAMILY SSF53850 90 290 6.76E-37 T 11-10-2018 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 Gene3D G3DSA:2.40.50.100 77 136 3.7E-9 T 11-10-2018 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 Pfam PF13437 HlyD family secretion protein 258 377 2.3E-19 T 11-10-2018 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 86 106 3.1E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 270 291 3.1E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 389 409 3.1E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 327 350 3.1E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 374 389 3.1E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 303 327 3.1E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 44 67 3.1E-41 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 Pfam PF13533 Biotin-lipoyl like 77 122 1.8E-8 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_20725 8c35a2a82f7201fc3b8c63ecda42c5cb 410 Gene3D G3DSA:2.40.30.170 268 392 3.8E-17 T 11-10-2018 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 Gene3D G3DSA:1.10.760.10 170 307 1.8E-6 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 Gene3D G3DSA:1.10.760.10 312 441 8.6E-31 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 Pfam PF00034 Cytochrome c 47 147 3.0E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 Pfam PF00034 Cytochrome c 332 416 6.5E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 PIRSF PIRSF000018 22 445 1.1E-143 T 11-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 SUPERFAMILY SSF46626 332 433 4.87E-23 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 SUPERFAMILY SSF46626 191 303 3.9E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 Gene3D G3DSA:1.10.760.10 7 153 4.4E-10 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25045 c2284e8a8a0251431dee88d3e675f8b5 450 SUPERFAMILY SSF46626 42 171 8.77E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 456 463 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 PRINTS PR00045 Sigma-54 factor signature 377 389 4.5E-27 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 PRINTS PR00045 Sigma-54 factor signature 451 469 4.5E-27 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 PRINTS PR00045 Sigma-54 factor signature 181 198 4.5E-27 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 PRINTS PR00045 Sigma-54 factor signature 393 404 4.5E-27 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 Gene3D G3DSA:1.10.10.1330 111 237 6.9E-17 T 11-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 18 475 8.0E-132 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 Pfam PF04963 Sigma-54 factor, core binding domain 107 305 2.8E-52 T 11-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 12 55 5.5E-16 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 365 384 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 Pfam PF04552 Sigma-54, DNA binding domain 320 475 2.1E-62 T 11-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 Gene3D G3DSA:1.10.10.60 418 475 1.8E-21 T 11-10-2018 APT56_00970 54d0edb237b49b43acf1da0e233debe7 481 PIRSF PIRSF000774 7 478 3.1E-146 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 SUPERFAMILY SSF48403 45 219 2.15E-41 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 Gene3D G3DSA:1.25.40.20 16 247 5.4E-47 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 SMART SM00248 133 162 4.9E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 SMART SM00248 103 132 0.48 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 SMART SM00248 69 99 520.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 SMART SM00248 36 65 2500.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 SMART SM00248 166 195 3.8E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 Pfam PF12796 Ankyrin repeats (3 copies) 47 132 3.8E-7 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 Pfam PF12796 Ankyrin repeats (3 copies) 134 195 1.7E-14 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 PRINTS PR01415 Ankyrin repeat signature 182 196 4.2E-7 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_12450 84892238bfc9f6e2c73f42d0f7a28d39 312 PRINTS PR01415 Ankyrin repeat signature 134 149 4.2E-7 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_22350 abb738b50df97679462122ec31fa18e5 440 SUPERFAMILY SSF53187 13 434 4.29E-56 T 11-10-2018 APT56_22350 abb738b50df97679462122ec31fa18e5 440 Gene3D G3DSA:3.40.630.10 33 434 1.8E-127 T 11-10-2018 APT56_22350 abb738b50df97679462122ec31fa18e5 440 SUPERFAMILY SSF55031 220 329 8.52E-15 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_22350 abb738b50df97679462122ec31fa18e5 440 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 103 112 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APT56_22350 abb738b50df97679462122ec31fa18e5 440 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 26 421 2.6E-73 T 11-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase APT56_22350 abb738b50df97679462122ec31fa18e5 440 Gene3D G3DSA:3.30.70.360 220 346 1.8E-127 T 11-10-2018 APT56_22350 abb738b50df97679462122ec31fa18e5 440 Pfam PF07687 Peptidase dimerisation domain 218 327 8.3E-13 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_22350 abb738b50df97679462122ec31fa18e5 440 Pfam PF01546 Peptidase family M20/M25/M40 104 430 1.0E-33 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_02750 00a4420387d373c5276f8345a2b5ec7b 272 SMART SM00530 25 97 5.8E-4 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_02750 00a4420387d373c5276f8345a2b5ec7b 272 SUPERFAMILY SSF47413 45 93 1.42E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_02750 00a4420387d373c5276f8345a2b5ec7b 272 Gene3D G3DSA:3.30.450.180 120 269 2.5E-16 T 11-10-2018 APT56_02750 00a4420387d373c5276f8345a2b5ec7b 272 Pfam PF13560 Helix-turn-helix domain 21 100 1.3E-16 T 11-10-2018 APT56_02750 00a4420387d373c5276f8345a2b5ec7b 272 Gene3D G3DSA:1.10.260.40 43 97 1.9E-6 T 11-10-2018 APT56_07540 093f78aee20df3fc25dac842e1278bd1 376 Pfam PF00266 Aminotransferase class-V 5 363 2.9E-44 T 11-10-2018 IPR000192 Aminotransferase class V domain APT56_07540 093f78aee20df3fc25dac842e1278bd1 376 Gene3D G3DSA:3.40.640.10 17 272 1.9E-84 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_07540 093f78aee20df3fc25dac842e1278bd1 376 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 375 5.4E-138 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 APT56_07540 093f78aee20df3fc25dac842e1278bd1 376 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 203 222 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APT56_07540 093f78aee20df3fc25dac842e1278bd1 376 Gene3D G3DSA:3.90.1150.10 273 376 2.1E-38 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_07540 093f78aee20df3fc25dac842e1278bd1 376 SUPERFAMILY SSF53383 4 375 1.16E-104 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_07540 093f78aee20df3fc25dac842e1278bd1 376 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 375 47.829 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 APT56_07540 093f78aee20df3fc25dac842e1278bd1 376 PIRSF PIRSF000525 1 376 1.1E-136 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 APT56_04500 1d046f69e59885f666719e3c493412e1 143 SUPERFAMILY SSF55298 14 142 8.48E-27 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_04500 1d046f69e59885f666719e3c493412e1 143 Gene3D G3DSA:3.30.1330.40 15 142 2.1E-27 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_04500 1d046f69e59885f666719e3c493412e1 143 Pfam PF01042 Endoribonuclease L-PSP 26 140 5.4E-18 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_04680 a7040ddb9f9d1f8fb9ff37ffa9ed24d7 380 PIRSF PIRSF000524 1 373 2.5E-52 T 11-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 APT56_04680 a7040ddb9f9d1f8fb9ff37ffa9ed24d7 380 Pfam PF00266 Aminotransferase class-V 28 301 1.3E-22 T 11-10-2018 IPR000192 Aminotransferase class V domain APT56_04680 a7040ddb9f9d1f8fb9ff37ffa9ed24d7 380 Gene3D G3DSA:3.40.640.10 12 259 4.3E-85 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_04680 a7040ddb9f9d1f8fb9ff37ffa9ed24d7 380 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 368 124.006 T 11-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 APT56_04680 a7040ddb9f9d1f8fb9ff37ffa9ed24d7 380 SUPERFAMILY SSF53383 2 363 6.53E-72 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_04680 a7040ddb9f9d1f8fb9ff37ffa9ed24d7 380 Gene3D G3DSA:3.90.1150.10 4 347 4.3E-85 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_03385 b4c3de8cbbe40e77461e84652044de4b 283 Pfam PF12697 Alpha/beta hydrolase family 50 263 5.5E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_03385 b4c3de8cbbe40e77461e84652044de4b 283 SUPERFAMILY SSF53474 43 277 7.61E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_03385 b4c3de8cbbe40e77461e84652044de4b 283 Gene3D G3DSA:3.40.50.1820 40 275 8.8E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_20320 53624c2b67ef77d1a517fa49a8b13845 505 Gene3D G3DSA:1.10.760.10 353 505 7.2E-13 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_20320 53624c2b67ef77d1a517fa49a8b13845 505 PIRSF PIRSF028099 2 505 2.3E-178 T 11-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase APT56_20320 53624c2b67ef77d1a517fa49a8b13845 505 SUPERFAMILY SSF46626 364 505 1.27E-28 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_20320 53624c2b67ef77d1a517fa49a8b13845 505 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 56 505 3.1E-132 T 11-10-2018 IPR010538 Di-haem oxidoreductase, putative peroxidase APT56_27825 4940cfa76f79a52700673051b99ce02d 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 3.6E-24 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 3.6E-24 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 3.6E-24 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.7E-46 T 11-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 Pfam PF00203 Ribosomal protein S19 3 83 1.3E-37 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 SUPERFAMILY SSF54570 2 84 1.83E-36 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.976 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 PIRSF PIRSF002144 1 91 1.1E-33 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 Gene3D G3DSA:3.30.860.10 1 91 7.7E-43 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27825 4940cfa76f79a52700673051b99ce02d 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_14890 f2b2e99aeb2b44fb2f5b8c90e8dcbbaf 669 Gene3D G3DSA:2.40.170.20 149 669 4.1E-68 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_14890 f2b2e99aeb2b44fb2f5b8c90e8dcbbaf 669 Pfam PF07715 TonB-dependent Receptor Plug Domain 35 137 1.0E-15 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_14890 f2b2e99aeb2b44fb2f5b8c90e8dcbbaf 669 Gene3D G3DSA:2.170.130.10 31 147 3.0E-25 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_14890 f2b2e99aeb2b44fb2f5b8c90e8dcbbaf 669 SUPERFAMILY SSF56935 26 669 1.28E-90 T 11-10-2018 APT56_14890 f2b2e99aeb2b44fb2f5b8c90e8dcbbaf 669 Pfam PF00593 TonB dependent receptor 223 666 1.1E-44 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_20800 7f0034a674fb22a90fb3e2d729c93a35 189 SUPERFAMILY SSF51182 61 184 7.8E-16 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_20800 7f0034a674fb22a90fb3e2d729c93a35 189 SMART SM00530 21 76 4.0E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_20800 7f0034a674fb22a90fb3e2d729c93a35 189 SUPERFAMILY SSF47413 14 80 5.9E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_20800 7f0034a674fb22a90fb3e2d729c93a35 189 Gene3D G3DSA:2.60.120.10 106 188 1.2E-13 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_20800 7f0034a674fb22a90fb3e2d729c93a35 189 Pfam PF07883 Cupin domain 117 184 2.4E-8 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_20800 7f0034a674fb22a90fb3e2d729c93a35 189 Pfam PF01381 Helix-turn-helix 22 75 5.4E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_20800 7f0034a674fb22a90fb3e2d729c93a35 189 Gene3D G3DSA:1.10.260.40 4 87 4.5E-19 T 11-10-2018 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Gene3D G3DSA:1.10.287.130 607 681 2.1E-18 T 11-10-2018 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Gene3D G3DSA:3.30.450.40 34 188 2.4E-31 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Gene3D G3DSA:3.30.565.10 684 849 2.9E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SUPERFAMILY SSF55785 178 304 8.72E-14 T 11-10-2018 IPR035965 PAS domain superfamily APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SUPERFAMILY SSF55785 489 594 1.61E-17 T 11-10-2018 IPR035965 PAS domain superfamily APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 486 580 4.8E-13 T 11-10-2018 IPR000014 PAS domain APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 188 313 4.7E-7 T 11-10-2018 IPR000014 PAS domain APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 PRINTS PR00344 Bacterial sensor protein C-terminal signature 831 844 4.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 PRINTS PR00344 Bacterial sensor protein C-terminal signature 794 804 4.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 PRINTS PR00344 Bacterial sensor protein C-terminal signature 776 790 4.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 PRINTS PR00344 Bacterial sensor protein C-terminal signature 807 825 4.8E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SUPERFAMILY SSF55874 673 845 1.44E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SMART SM00065 34 187 4.4E-8 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Pfam PF00072 Response regulator receiver domain 872 982 4.9E-17 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SUPERFAMILY SSF52172 872 987 1.05E-26 T 11-10-2018 IPR011006 CheY-like superfamily APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Pfam PF13185 GAF domain 35 178 1.4E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SMART SM00388 615 683 6.9E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SMART SM00091 482 548 8.0E-9 T 11-10-2018 IPR000014 PAS domain APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SMART SM00091 191 265 3.0 T 11-10-2018 IPR000014 PAS domain APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Pfam PF08447 PAS fold 506 577 3.6E-11 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SMART SM00387 724 847 7.2E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Pfam PF08448 PAS fold 219 307 5.5E-9 T 11-10-2018 IPR013656 PAS fold-4 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Pfam PF00512 His Kinase A (phospho-acceptor) domain 616 681 7.0E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Gene3D G3DSA:3.30.450.20 189 305 4.4E-17 T 11-10-2018 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 725 845 1.3E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SMART SM00448 870 982 1.6E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Gene3D G3DSA:3.30.450.20 489 588 4.1E-18 T 11-10-2018 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 Gene3D G3DSA:3.40.50.2300 867 990 2.6E-24 T 11-10-2018 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SUPERFAMILY SSF47384 607 680 3.53E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_14380 1167af287735a9359e5d251fa053a2ba 1003 SUPERFAMILY SSF55781 55 188 1.2E-21 T 11-10-2018 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 SUPERFAMILY SSF52009 345 465 5.89E-35 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 SUPERFAMILY SSF51621 464 787 4.45E-91 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 SUPERFAMILY SSF56059 1 383 4.47E-107 T 11-10-2018 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 Gene3D G3DSA:3.30.1490.20 1 190 1.8E-70 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 412 423 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 Gene3D G3DSA:3.20.20.60 476 788 3.1E-96 T 11-10-2018 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 478 787 1.5E-55 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 4 787 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 692 710 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 16 347 9.3E-115 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 PIRSF PIRSF000854 1 788 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 Pfam PF00391 PEP-utilising enzyme, mobile domain 382 453 1.2E-26 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 Gene3D G3DSA:3.30.470.20 191 354 2.5E-57 T 11-10-2018 APT56_12340 97eff2754e5abf85d2ef124ca37561ad 788 Gene3D G3DSA:3.50.30.10 355 465 9.1E-41 T 11-10-2018 APT56_19025 9b050ab96e5f9e419f7cfa23d8b26d27 511 Pfam PF00501 AMP-binding enzyme 8 410 8.3E-89 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_19025 9b050ab96e5f9e419f7cfa23d8b26d27 511 Gene3D G3DSA:3.40.50.12780 1 405 2.2E-97 T 11-10-2018 APT56_19025 9b050ab96e5f9e419f7cfa23d8b26d27 511 SUPERFAMILY SSF56801 3 506 4.58E-133 T 11-10-2018 APT56_19025 9b050ab96e5f9e419f7cfa23d8b26d27 511 ProSitePatterns PS00455 Putative AMP-binding domain signature. 155 166 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_19025 9b050ab96e5f9e419f7cfa23d8b26d27 511 Pfam PF13193 AMP-binding enzyme C-terminal domain 419 494 3.4E-22 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_19025 9b050ab96e5f9e419f7cfa23d8b26d27 511 Gene3D G3DSA:3.30.300.310 406 509 2.6E-34 T 11-10-2018 APT56_02100 b28f96e0c7ae93f35ab06456cb50687c 253 PIRSF PIRSF015736 1 253 1.5E-60 T 11-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase APT56_02100 b28f96e0c7ae93f35ab06456cb50687c 253 Gene3D G3DSA:3.40.50.12500 7 253 1.7E-85 T 11-10-2018 APT56_02100 b28f96e0c7ae93f35ab06456cb50687c 253 Hamap MF_00943 Maleate isomerase [maiA]. 8 253 50.639 T 11-10-2018 IPR028615 Maleate isomerase GO:0050076 KEGG: 00650+5.2.1.1|KEGG: 00760+5.2.1.1|MetaCyc: PWY-5033|MetaCyc: PWY-6993|MetaCyc: PWY-7128|MetaCyc: PWY-722 APT56_02100 b28f96e0c7ae93f35ab06456cb50687c 253 Pfam PF01177 Asp/Glu/Hydantoin racemase 10 229 4.5E-8 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_07590 615e3bf48840e2dc990ff1dd60c733ba 313 SUPERFAMILY SSF53613 13 309 5.3E-59 T 11-10-2018 IPR029056 Ribokinase-like APT56_07590 615e3bf48840e2dc990ff1dd60c733ba 313 Gene3D G3DSA:3.40.1190.20 2 309 5.7E-120 T 11-10-2018 IPR029056 Ribokinase-like APT56_07590 615e3bf48840e2dc990ff1dd60c733ba 313 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 52 75 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APT56_07590 615e3bf48840e2dc990ff1dd60c733ba 313 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 7 311 1.4E-125 T 11-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 APT56_07590 615e3bf48840e2dc990ff1dd60c733ba 313 Pfam PF00294 pfkB family carbohydrate kinase 13 301 3.9E-41 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 139 150 2.0E-27 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 57 76 2.0E-27 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 273 296 2.0E-27 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 261 270 2.0E-27 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 SUPERFAMILY SSF53671 11 308 4.84E-102 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 Gene3D G3DSA:3.40.50.1370 142 295 1.1E-112 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 57 64 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 12 308 2.8E-113 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 128 142 5.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 287 298 5.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 225 235 5.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 55 69 5.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APT56_08880 94f60fc46e3c62535662acab870c9015 313 PRINTS PR00102 Ornithine carbamoyltransferase signature 88 101 5.0E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APT56_08880 94f60fc46e3c62535662acab870c9015 313 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 11 309 78.243 T 11-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 APT56_08880 94f60fc46e3c62535662acab870c9015 313 Gene3D G3DSA:3.40.50.1370 13 305 1.1E-112 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 159 306 2.4E-47 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 APT56_08880 94f60fc46e3c62535662acab870c9015 313 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 12 151 1.4E-50 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 APT56_08050 cd2f2060b2ab1986ad66860964d04eee 284 SUPERFAMILY SSF55781 117 279 1.37E-29 T 11-10-2018 APT56_08050 cd2f2060b2ab1986ad66860964d04eee 284 Pfam PF01614 Bacterial transcriptional regulator 177 275 4.3E-7 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_08050 cd2f2060b2ab1986ad66860964d04eee 284 Gene3D G3DSA:3.30.450.40 119 280 1.4E-28 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_08050 cd2f2060b2ab1986ad66860964d04eee 284 Pfam PF09339 IclR helix-turn-helix domain 47 98 7.8E-15 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_08050 cd2f2060b2ab1986ad66860964d04eee 284 Gene3D G3DSA:1.10.10.10 40 114 5.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08050 cd2f2060b2ab1986ad66860964d04eee 284 SMART SM00346 45 135 2.8E-17 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_08050 cd2f2060b2ab1986ad66860964d04eee 284 SUPERFAMILY SSF46785 45 117 4.53E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08465 31d065d599a5855a086c9f559ff294ca 291 Pfam PF05013 N-formylglutamate amidohydrolase 24 257 4.9E-68 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase APT56_08465 31d065d599a5855a086c9f559ff294ca 291 SUPERFAMILY SSF53187 18 287 1.66E-87 T 11-10-2018 APT56_08465 31d065d599a5855a086c9f559ff294ca 291 Gene3D G3DSA:3.40.630.40 11 290 5.1E-100 T 11-10-2018 APT56_13335 50e354db9ff7c3c6f9be0e50bccac308 263 SMART SM00079 36 259 0.0086 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 APT56_13335 50e354db9ff7c3c6f9be0e50bccac308 263 Gene3D G3DSA:3.40.190.10 124 216 1.6E-68 T 11-10-2018 APT56_13335 50e354db9ff7c3c6f9be0e50bccac308 263 SUPERFAMILY SSF53850 2 260 1.21E-66 T 11-10-2018 APT56_13335 50e354db9ff7c3c6f9be0e50bccac308 263 Gene3D G3DSA:3.40.190.10 40 258 1.6E-68 T 11-10-2018 APT56_13335 50e354db9ff7c3c6f9be0e50bccac308 263 SMART SM00062 38 260 5.2E-64 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_13335 50e354db9ff7c3c6f9be0e50bccac308 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 258 3.6E-64 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_09805 2e465058b599ea7fcb6b3dccbfef87ed 273 PIRSF PIRSF001430 1 259 3.5E-75 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_09805 2e465058b599ea7fcb6b3dccbfef87ed 273 Gene3D G3DSA:3.30.70.580 1 107 1.6E-35 T 11-10-2018 APT56_09805 2e465058b599ea7fcb6b3dccbfef87ed 273 SUPERFAMILY SSF55120 1 252 5.32E-88 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_09805 2e465058b599ea7fcb6b3dccbfef87ed 273 Pfam PF01416 tRNA pseudouridine synthase 10 105 2.1E-7 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_09805 2e465058b599ea7fcb6b3dccbfef87ed 273 Pfam PF01416 tRNA pseudouridine synthase 145 247 4.1E-29 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_09805 2e465058b599ea7fcb6b3dccbfef87ed 273 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 3 241 5.3E-65 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_09805 2e465058b599ea7fcb6b3dccbfef87ed 273 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 246 33.416 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_09805 2e465058b599ea7fcb6b3dccbfef87ed 273 Gene3D G3DSA:3.30.70.660 108 245 3.4E-47 T 11-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 APT56_03535 ee9ac24610dbe319bbae5946f65ec03a 159 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 84.0 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 APT56_03535 ee9ac24610dbe319bbae5946f65ec03a 159 Pfam PF03477 ATP cone domain 50 136 2.9E-14 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 APT56_03535 ee9ac24610dbe319bbae5946f65ec03a 159 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 146 6.9E-59 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 APT56_01215 63b1920edbef4c5f7328ebb03609a4dd 195 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 156 168 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APT56_01215 63b1920edbef4c5f7328ebb03609a4dd 195 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 61 74 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APT56_01215 63b1920edbef4c5f7328ebb03609a4dd 195 SUPERFAMILY SSF54211 87 179 1.19E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_01215 63b1920edbef4c5f7328ebb03609a4dd 195 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 31 174 4.8E-62 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APT56_01215 63b1920edbef4c5f7328ebb03609a4dd 195 SUPERFAMILY SSF54211 1 85 1.23E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_01215 63b1920edbef4c5f7328ebb03609a4dd 195 Gene3D G3DSA:3.30.230.40 90 195 6.1E-39 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 APT56_01215 63b1920edbef4c5f7328ebb03609a4dd 195 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 2 195 42.078 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APT56_01215 63b1920edbef4c5f7328ebb03609a4dd 195 Gene3D G3DSA:3.30.230.40 1 89 6.5E-37 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 APT56_18255 f9ace0c283dcc8b87230e4552b4c4964 350 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 22 341 2.2E-101 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 APT56_18255 f9ace0c283dcc8b87230e4552b4c4964 350 SUPERFAMILY SSF52540 55 194 4.78E-10 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18255 f9ace0c283dcc8b87230e4552b4c4964 350 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 10 346 38.563 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 APT56_18255 f9ace0c283dcc8b87230e4552b4c4964 350 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 34 329 2.3E-71 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 APT56_20610 7edd3d447c0b51f39cbb61452672d07b 396 SUPERFAMILY SSF52172 3 141 8.25E-25 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20610 7edd3d447c0b51f39cbb61452672d07b 396 Pfam PF00563 EAL domain 144 377 3.6E-53 T 11-10-2018 IPR001633 EAL domain APT56_20610 7edd3d447c0b51f39cbb61452672d07b 396 SUPERFAMILY SSF141868 145 390 1.44E-60 T 11-10-2018 IPR035919 EAL domain superfamily APT56_20610 7edd3d447c0b51f39cbb61452672d07b 396 Gene3D G3DSA:3.20.20.450 142 393 7.5E-64 T 11-10-2018 IPR035919 EAL domain superfamily APT56_20610 7edd3d447c0b51f39cbb61452672d07b 396 SMART SM00052 138 383 7.6E-53 T 11-10-2018 IPR001633 EAL domain APT56_20610 7edd3d447c0b51f39cbb61452672d07b 396 SMART SM00448 4 121 2.9E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20610 7edd3d447c0b51f39cbb61452672d07b 396 Gene3D G3DSA:3.40.50.2300 3 133 1.8E-23 T 11-10-2018 APT56_20610 7edd3d447c0b51f39cbb61452672d07b 396 Pfam PF00072 Response regulator receiver domain 6 121 1.1E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_01965 2f9d9490eccb020b03eab09ac4437047 343 SUPERFAMILY SSF53448 9 235 2.39E-43 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_01965 2f9d9490eccb020b03eab09ac4437047 343 Gene3D G3DSA:3.90.550.10 2 248 2.0E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_01965 2f9d9490eccb020b03eab09ac4437047 343 Pfam PF00535 Glycosyl transferase family 2 12 132 3.3E-24 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_12480 122ff78db2d60d8e33c9ad9a4e48b188 557 Gene3D G3DSA:3.40.462.20 230 526 1.7E-123 T 11-10-2018 APT56_12480 122ff78db2d60d8e33c9ad9a4e48b188 557 Pfam PF01565 FAD binding domain 34 180 2.5E-9 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_12480 122ff78db2d60d8e33c9ad9a4e48b188 557 SUPERFAMILY SSF56176 26 223 1.4E-22 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_12480 122ff78db2d60d8e33c9ad9a4e48b188 557 Gene3D G3DSA:3.30.465.40 8 540 1.7E-123 T 11-10-2018 APT56_12480 122ff78db2d60d8e33c9ad9a4e48b188 557 Pfam PF08031 Berberine and berberine like 496 551 6.1E-13 T 11-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 APT56_02630 0b849af4e7053fc888d9387098301c3b 232 Pfam PF00072 Response regulator receiver domain 5 117 7.1E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_02630 0b849af4e7053fc888d9387098301c3b 232 Gene3D G3DSA:1.10.10.10 127 228 2.8E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02630 0b849af4e7053fc888d9387098301c3b 232 SMART SM00862 148 225 2.3E-28 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_02630 0b849af4e7053fc888d9387098301c3b 232 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 4.9E-113 T 11-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 APT56_02630 0b849af4e7053fc888d9387098301c3b 232 SMART SM00448 3 116 2.2E-42 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_02630 0b849af4e7053fc888d9387098301c3b 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.5E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_02630 0b849af4e7053fc888d9387098301c3b 232 SUPERFAMILY SSF52172 3 126 6.97E-43 T 11-10-2018 IPR011006 CheY-like superfamily APT56_02630 0b849af4e7053fc888d9387098301c3b 232 SUPERFAMILY SSF46894 123 226 2.83E-31 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_02630 0b849af4e7053fc888d9387098301c3b 232 Gene3D G3DSA:3.40.50.2300 1 126 6.2E-39 T 11-10-2018 APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 Gene3D G3DSA:3.40.50.10070 36 175 1.4E-33 T 11-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 SUPERFAMILY SSF52964 47 172 3.92E-31 T 11-10-2018 APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 31 436 1.6E-156 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 Pfam PF04052 TolB amino-terminal domain 40 139 2.2E-22 T 11-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 21 435 45.539 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 Pfam PF07676 WD40-like Beta Propeller Repeat 289 325 4.8E-15 T 11-10-2018 IPR011659 WD40-like Beta Propeller APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 Pfam PF07676 WD40-like Beta Propeller Repeat 208 236 3.4E-8 T 11-10-2018 IPR011659 WD40-like Beta Propeller APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 Pfam PF07676 WD40-like Beta Propeller Repeat 334 367 2.2E-8 T 11-10-2018 IPR011659 WD40-like Beta Propeller APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 Pfam PF07676 WD40-like Beta Propeller Repeat 246 280 8.3E-7 T 11-10-2018 IPR011659 WD40-like Beta Propeller APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 Gene3D G3DSA:2.120.10.30 176 440 2.9E-86 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_04100 bdd4724fc54a77d26954575fc0c2b25f 440 SUPERFAMILY SSF69304 165 437 4.84E-54 T 11-10-2018 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 Pfam PF00717 Peptidase S24-like 96 178 8.4E-22 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 ProSitePatterns PS00501 Signal peptidases I serine active site. 99 106 - T 11-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 154 166 4.1E-25 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 244 263 4.1E-25 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 90 106 4.1E-25 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 Pfam PF10502 Signal peptidase, peptidase S26 243 281 8.4E-7 T 11-10-2018 IPR019533 Peptidase S26 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 ProSitePatterns PS00760 Signal peptidases I lysine active site. 156 168 - T 11-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 SUPERFAMILY SSF51306 88 290 2.3E-69 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 Gene3D G3DSA:2.170.230.10 165 243 8.7E-75 T 11-10-2018 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 75 284 1.2E-51 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APT56_06835 5bb1582445665deeaf1ac0fa42f318e0 294 Gene3D G3DSA:2.10.109.10 88 284 8.7E-75 T 11-10-2018 APT56_03290 4d81a17b29d0242cde9cb113b91ae858 144 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 143 8.4E-58 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT56_03290 4d81a17b29d0242cde9cb113b91ae858 144 Gene3D G3DSA:3.40.50.9100 1 144 8.8E-64 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT56_03290 4d81a17b29d0242cde9cb113b91ae858 144 SUPERFAMILY SSF52304 4 143 4.58E-60 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT56_03290 4d81a17b29d0242cde9cb113b91ae858 144 Pfam PF01220 Dehydroquinase class II 4 141 3.1E-59 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT56_03290 4d81a17b29d0242cde9cb113b91ae858 144 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 141 5.0E-64 T 11-10-2018 APT56_03290 4d81a17b29d0242cde9cb113b91ae858 144 PIRSF PIRSF001399 1 144 1.5E-57 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT56_03290 4d81a17b29d0242cde9cb113b91ae858 144 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 11-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT56_03290 4d81a17b29d0242cde9cb113b91ae858 144 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 144 70.928 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APT56_12495 69b517ee2b6019ba5386ba1447b0c297 258 Gene3D G3DSA:3.30.930.10 10 256 2.7E-57 T 11-10-2018 APT56_12495 69b517ee2b6019ba5386ba1447b0c297 258 SUPERFAMILY SSF55681 4 254 6.89E-66 T 11-10-2018 APT56_12495 69b517ee2b6019ba5386ba1447b0c297 258 Pfam PF03099 Biotin/lipoate A/B protein ligase family 66 172 1.4E-6 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 APT56_15835 3f04ded0deb178d03fef08ee775ff97e 388 Gene3D G3DSA:3.40.50.2300 32 356 5.7E-102 T 11-10-2018 APT56_15835 3f04ded0deb178d03fef08ee775ff97e 388 Gene3D G3DSA:3.40.50.2300 145 373 5.7E-102 T 11-10-2018 APT56_15835 3f04ded0deb178d03fef08ee775ff97e 388 SUPERFAMILY SSF53822 29 372 2.69E-88 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_15835 3f04ded0deb178d03fef08ee775ff97e 388 Pfam PF13458 Periplasmic binding protein 29 367 1.1E-80 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_13910 de138925266b98bb5d5944797a649fd7 569 Gene3D G3DSA:3.30.9.10 146 309 2.8E-10 T 11-10-2018 APT56_13910 de138925266b98bb5d5944797a649fd7 569 SUPERFAMILY SSF51905 29 362 5.44E-26 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13910 de138925266b98bb5d5944797a649fd7 569 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 41 526 5.7E-219 T 11-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 APT56_13910 de138925266b98bb5d5944797a649fd7 569 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 42 524 2.3E-197 T 11-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 APT56_13910 de138925266b98bb5d5944797a649fd7 569 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 37 526 52.148 T 11-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 APT56_13910 de138925266b98bb5d5944797a649fd7 569 Gene3D G3DSA:3.50.50.60 43 297 2.8E-10 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10035 7595332a00879f0fa84b4542be6a532f 340 SUPERFAMILY SSF55681 93 339 5.25E-76 T 11-10-2018 APT56_10035 7595332a00879f0fa84b4542be6a532f 340 Pfam PF01409 tRNA synthetases class II core domain (F) 93 338 2.4E-92 T 11-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 APT56_10035 7595332a00879f0fa84b4542be6a532f 340 SUPERFAMILY SSF46589 17 100 1.31E-19 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 APT56_10035 7595332a00879f0fa84b4542be6a532f 340 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 21 88 1.2E-20 T 11-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APT56_10035 7595332a00879f0fa84b4542be6a532f 340 Gene3D G3DSA:3.30.930.10 9 340 1.2E-111 T 11-10-2018 APT56_10035 7595332a00879f0fa84b4542be6a532f 340 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 9 338 45.686 T 11-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 APT56_10035 7595332a00879f0fa84b4542be6a532f 340 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 40 339 2.5E-96 T 11-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APT56_04545 44514c576670bd463c09ca850eef02f9 201 SUPERFAMILY SSF48150 12 188 4.32E-71 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT56_04545 44514c576670bd463c09ca850eef02f9 201 Pfam PF03352 Methyladenine glycosylase 16 186 1.1E-70 T 11-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 APT56_04545 44514c576670bd463c09ca850eef02f9 201 Gene3D G3DSA:1.10.340.30 11 191 1.1E-74 T 11-10-2018 APT56_05785 e6e6179e7e498b55be7d90e9e90497ea 519 PIRSF PIRSF002741 11 515 2.5E-64 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_05785 e6e6179e7e498b55be7d90e9e90497ea 519 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 424 1.7E-67 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_05785 e6e6179e7e498b55be7d90e9e90497ea 519 SUPERFAMILY SSF53850 35 515 2.13E-95 T 11-10-2018 APT56_05785 e6e6179e7e498b55be7d90e9e90497ea 519 Gene3D G3DSA:3.10.105.10 282 487 1.3E-26 T 11-10-2018 APT56_05785 e6e6179e7e498b55be7d90e9e90497ea 519 Gene3D G3DSA:3.40.190.10 24 277 9.3E-57 T 11-10-2018 APT56_01410 f8633d1dc3247d7a289067f7cb502b2e 291 Pfam PF00510 Cytochrome c oxidase subunit III 16 291 3.2E-57 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01410 f8633d1dc3247d7a289067f7cb502b2e 291 Gene3D G3DSA:1.20.120.80 79 291 4.0E-68 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_01410 f8633d1dc3247d7a289067f7cb502b2e 291 Gene3D G3DSA:1.10.287.70 7 78 2.2E-12 T 11-10-2018 APT56_01410 f8633d1dc3247d7a289067f7cb502b2e 291 SUPERFAMILY SSF81452 13 290 9.55E-79 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_20870 acbee5d3631293cf42c84f30b7d591d5 301 Gene3D G3DSA:1.10.3720.10 87 296 7.3E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20870 acbee5d3631293cf42c84f30b7d591d5 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 58 1.3E-6 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_20870 acbee5d3631293cf42c84f30b7d591d5 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 300 2.1E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_20870 acbee5d3631293cf42c84f30b7d591d5 301 SUPERFAMILY SSF161098 94 283 1.01E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21855 31c0851cbbc157908121ebd5a0f049db 346 Gene3D G3DSA:3.40.190.10 28 324 8.8E-124 T 11-10-2018 APT56_21855 31c0851cbbc157908121ebd5a0f049db 346 SUPERFAMILY SSF53850 27 337 1.09E-95 T 11-10-2018 APT56_21855 31c0851cbbc157908121ebd5a0f049db 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 27 334 1.1E-125 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 APT56_21855 31c0851cbbc157908121ebd5a0f049db 346 Pfam PF12849 PBP superfamily domain 24 307 5.1E-60 T 11-10-2018 IPR024370 PBP domain APT56_21855 31c0851cbbc157908121ebd5a0f049db 346 PIRSF PIRSF002756 5 339 3.0E-108 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 APT56_21855 31c0851cbbc157908121ebd5a0f049db 346 Gene3D G3DSA:3.40.190.10 101 277 8.8E-124 T 11-10-2018 APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 SUPERFAMILY SSF50129 318 369 3.86E-12 T 11-10-2018 IPR011032 GroES-like superfamily APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 Gene3D G3DSA:3.40.50.720 174 312 1.3E-151 T 11-10-2018 APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 SMART SM00829 10 367 0.0011 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 1.8E-25 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 SUPERFAMILY SSF50129 1 186 2.43E-73 T 11-10-2018 IPR011032 GroES-like superfamily APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 Gene3D G3DSA:3.90.180.10 6 364 1.3E-151 T 11-10-2018 APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 Pfam PF00107 Zinc-binding dehydrogenase 197 330 1.0E-22 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 1.4E-221 T 11-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 APT56_01645 d686e7545c7eaa06effb95f09e3133eb 369 SUPERFAMILY SSF51735 160 334 3.73E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 SUPERFAMILY SSF55874 275 395 6.42E-20 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 Gene3D G3DSA:1.10.287.130 174 256 2.2E-6 T 11-10-2018 APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 SMART SM00387 288 397 2.8E-10 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 341 3.3E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 394 3.3E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 375 3.3E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 SUPERFAMILY SSF47384 197 241 2.75E-5 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 292 396 1.9E-11 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_23310 e3a15077e4e88fa7a774edfda4f3ae13 400 Gene3D G3DSA:3.30.565.10 260 397 5.1E-17 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_13835 7f337e78e96f9a8bdad8a9deef46f668 152 PRINTS PR01438 Universal stress protein signature 106 118 3.0E-20 T 11-10-2018 IPR006015 Universal stress protein A APT56_13835 7f337e78e96f9a8bdad8a9deef46f668 152 PRINTS PR01438 Universal stress protein signature 2 20 3.0E-20 T 11-10-2018 IPR006015 Universal stress protein A APT56_13835 7f337e78e96f9a8bdad8a9deef46f668 152 PRINTS PR01438 Universal stress protein signature 124 146 3.0E-20 T 11-10-2018 IPR006015 Universal stress protein A APT56_13835 7f337e78e96f9a8bdad8a9deef46f668 152 PIRSF PIRSF006276 1 149 5.4E-18 T 11-10-2018 IPR006015 Universal stress protein A APT56_13835 7f337e78e96f9a8bdad8a9deef46f668 152 SUPERFAMILY SSF52402 2 148 4.94E-38 T 11-10-2018 APT56_13835 7f337e78e96f9a8bdad8a9deef46f668 152 Pfam PF00582 Universal stress protein family 1 146 8.4E-33 T 11-10-2018 IPR006016 UspA APT56_13835 7f337e78e96f9a8bdad8a9deef46f668 152 Gene3D G3DSA:3.40.50.620 1 147 5.0E-41 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 Gene3D G3DSA:3.40.50.261 240 386 2.3E-58 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 Gene3D G3DSA:3.30.470.20 1 234 8.1E-97 T 11-10-2018 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.904 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 Gene3D G3DSA:3.30.1490.20 21 104 8.1E-97 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 Pfam PF00549 CoA-ligase 262 381 1.9E-25 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 SUPERFAMILY SSF56059 1 238 7.6E-84 T 11-10-2018 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 PIRSF PIRSF001554 1 386 1.3E-153 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 SUPERFAMILY SSF52210 239 385 1.96E-54 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 Pfam PF08442 ATP-grasp domain 2 201 1.5E-79 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_08265 8234fe5fb23dc6ce1d5d2a501ffcfcb3 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 2.6E-159 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 SUPERFAMILY SSF46785 1 111 9.12E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 Gene3D G3DSA:3.40.190.10 96 259 1.0E-48 T 11-10-2018 APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 Pfam PF03466 LysR substrate binding domain 93 280 2.1E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 Gene3D G3DSA:3.40.190.10 162 254 1.0E-48 T 11-10-2018 APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 SUPERFAMILY SSF53850 93 283 1.49E-25 T 11-10-2018 APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 65 9.6E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21565 19b3d47ed99d8b064b91c294313b30a1 295 Gene3D G3DSA:1.10.10.10 1 84 1.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18235 65074db522e1979ec844d4f33c4af216 1093 Gene3D G3DSA:1.25.40.20 416 539 1.0E-11 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SUPERFAMILY SSF48403 496 843 7.87E-23 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_18235 65074db522e1979ec844d4f33c4af216 1093 Gene3D G3DSA:1.25.40.20 732 845 2.3E-14 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 491 520 790.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 195 224 9.4 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 635 664 0.44 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 785 814 7.6 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 456 485 0.23 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 818 847 51.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 602 631 80.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 421 450 1400.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SMART SM00248 333 364 6.3 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18235 65074db522e1979ec844d4f33c4af216 1093 Gene3D G3DSA:1.25.40.20 93 415 1.9E-13 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_18235 65074db522e1979ec844d4f33c4af216 1093 Gene3D G3DSA:1.25.40.20 540 680 6.7E-15 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_18235 65074db522e1979ec844d4f33c4af216 1093 SUPERFAMILY SSF48403 186 514 2.91E-17 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 Gene3D G3DSA:1.10.720.90 2 55 4.6E-25 T 11-10-2018 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 6.3E-49 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 Pfam PF00453 Ribosomal protein L20 3 109 1.3E-48 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.158 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 SUPERFAMILY SSF74731 2 117 2.62E-49 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 Gene3D G3DSA:1.10.1900.20 56 119 2.9E-29 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 71 4.0E-22 T 11-10-2018 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.7E-39 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.7E-39 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10030 1992ed2c46066a88ef5dcfcc9ccb5a7f 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.7E-39 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26710 364b10054891adf7a82c29630747a5cb 157 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 38 155 6.7E-27 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 APT56_26710 364b10054891adf7a82c29630747a5cb 157 SUPERFAMILY SSF52980 42 149 8.58E-15 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT56_26710 364b10054891adf7a82c29630747a5cb 157 Hamap MF_00048 UPF0102 protein YraN [yraN]. 40 155 21.083 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 APT56_26710 364b10054891adf7a82c29630747a5cb 157 Pfam PF02021 Uncharacterised protein family UPF0102 48 141 8.0E-23 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 APT56_26710 364b10054891adf7a82c29630747a5cb 157 Gene3D G3DSA:3.40.1350.10 46 157 3.3E-26 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 Gene3D G3DSA:3.60.20.40 362 542 2.5E-65 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 Gene3D G3DSA:1.10.246.130 250 361 1.6E-30 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 SUPERFAMILY SSF56235 7 542 2.51E-175 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 136 155 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 234 250 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 412 427 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 357 375 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 263 282 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 118 136 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 381 399 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 43 68 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 436 453 1.3E-42 T 11-10-2018 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 22 514 1.5E-108 T 11-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 APT56_11720 e3622209c22a1b14904765fb8d6c572d 542 Pfam PF01019 Gamma-glutamyltranspeptidase 36 537 1.2E-150 T 11-10-2018 APT56_08930 de4597132554017cbd11e98108720eef 335 SUPERFAMILY SSF52540 12 260 4.37E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08930 de4597132554017cbd11e98108720eef 335 Pfam PF00005 ABC transporter 32 189 3.8E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_08930 de4597132554017cbd11e98108720eef 335 Gene3D G3DSA:3.40.50.300 10 333 3.2E-98 T 11-10-2018 APT56_08930 de4597132554017cbd11e98108720eef 335 SMART SM00382 40 247 6.6E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08930 de4597132554017cbd11e98108720eef 335 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 305 2.4E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_08930 de4597132554017cbd11e98108720eef 335 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 325 7.4E-24 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_08930 de4597132554017cbd11e98108720eef 335 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_11435 f3d434591ac3158bc26595a737339df8 233 Pfam PF06912 Protein of unknown function (DUF1275) 20 222 8.2E-30 T 11-10-2018 IPR010699 Protein of unknown function DUF1275 APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 Pfam PF13407 Periplasmic binding protein domain 131 323 1.1E-34 T 11-10-2018 IPR025997 Periplasmic binding protein APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 SUPERFAMILY SSF53822 76 337 4.71E-39 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 Gene3D G3DSA:3.40.50.2300 179 352 1.3E-41 T 11-10-2018 APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 SUPERFAMILY SSF47413 14 62 4.71E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 Gene3D G3DSA:1.10.260.40 7 69 6.6E-16 T 11-10-2018 APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 Pfam PF00356 Bacterial regulatory proteins, lacI family 17 61 2.4E-13 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 SMART SM00354 15 85 3.4E-7 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 ProSitePatterns PS00356 LacI-type HTH domain signature. 18 36 - T 11-10-2018 APT56_19330 54dc0a8b4b0fbb9ce54ca4e94fe2fd00 353 Gene3D G3DSA:3.40.50.2300 94 343 1.3E-41 T 11-10-2018 APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 SUPERFAMILY SSF53383 129 468 3.3E-78 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 Gene3D G3DSA:3.90.1150.10 132 467 4.7E-81 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 SUPERFAMILY SSF46785 16 87 1.28E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 Gene3D G3DSA:1.10.10.10 14 85 3.9E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 1.1E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 Gene3D G3DSA:3.40.640.10 162 379 4.7E-81 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 SMART SM00345 24 83 3.7E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 2.0E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 2.0E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_04040 5fe90a9a15e5e76c870e5ccad00b0aa3 479 Pfam PF00155 Aminotransferase class I and II 153 476 6.1E-34 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_05195 811963501300297698129a61a8aa36a6 177 SUPERFAMILY SSF52499 1 177 2.09E-45 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_05195 811963501300297698129a61a8aa36a6 177 Pfam PF00857 Isochorismatase family 8 154 3.7E-29 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_05195 811963501300297698129a61a8aa36a6 177 Gene3D G3DSA:3.40.50.850 1 177 2.5E-53 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_16610 c811f2e99e79649dbebc6edb6a5d59fb 248 Pfam PF09825 Biotin-protein ligase, N terminal 32 127 4.0E-7 T 11-10-2018 IPR019197 Biotin-protein ligase, N-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_16610 c811f2e99e79649dbebc6edb6a5d59fb 248 SUPERFAMILY SSF52317 36 217 7.02E-12 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_16610 c811f2e99e79649dbebc6edb6a5d59fb 248 PIRSF PIRSF016642 6 242 1.4E-51 T 11-10-2018 IPR015834 Uncharacterised conserved protein UCP016642 APT56_09380 b95c94748a79b4a0b9f7880bb2bc0349 182 Pfam PF01047 MarR family 41 99 4.8E-17 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09380 b95c94748a79b4a0b9f7880bb2bc0349 182 SUPERFAMILY SSF46785 13 149 1.65E-31 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_09380 b95c94748a79b4a0b9f7880bb2bc0349 182 ProSitePatterns PS01117 MarR-type HTH domain signature. 73 107 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_09380 b95c94748a79b4a0b9f7880bb2bc0349 182 SMART SM00347 34 134 2.4E-25 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09380 b95c94748a79b4a0b9f7880bb2bc0349 182 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 1.4E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09380 b95c94748a79b4a0b9f7880bb2bc0349 182 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 1.4E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09380 b95c94748a79b4a0b9f7880bb2bc0349 182 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 1.4E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09380 b95c94748a79b4a0b9f7880bb2bc0349 182 Gene3D G3DSA:1.10.10.10 8 146 1.7E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07465 7e0a1ed3ecc039c7dcb3b79f22d718fd 79 Gene3D G3DSA:1.10.1200.10 4 78 1.2E-15 T 11-10-2018 IPR036736 ACP-like superfamily APT56_07465 7e0a1ed3ecc039c7dcb3b79f22d718fd 79 Pfam PF00550 Phosphopantetheine attachment site 19 73 1.3E-8 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APT56_07465 7e0a1ed3ecc039c7dcb3b79f22d718fd 79 SUPERFAMILY SSF47336 1 76 3.53E-11 T 11-10-2018 IPR036736 ACP-like superfamily APT56_08710 75ba31435bcac9a9cc2a070b8042d1f5 556 Pfam PF01645 Conserved region in glutamate synthase 157 474 1.2E-83 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 APT56_08710 75ba31435bcac9a9cc2a070b8042d1f5 556 PIRSF PIRSF006429 6 543 8.0E-163 T 11-10-2018 IPR024188 Glutamate synthase large subunit-like protein APT56_08710 75ba31435bcac9a9cc2a070b8042d1f5 556 Gene3D G3DSA:3.20.20.70 150 501 5.2E-110 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_08710 75ba31435bcac9a9cc2a070b8042d1f5 556 SUPERFAMILY SSF51395 21 500 6.28E-140 T 11-10-2018 APT56_08710 75ba31435bcac9a9cc2a070b8042d1f5 556 PIRSF PIRSF500060 11 531 6.0E-243 T 11-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 Gene3D G3DSA:2.40.50.140 293 342 1.8E-20 T 11-10-2018 APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 Pfam PF08402 TOBE domain 280 346 6.0E-9 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 Pfam PF00005 ABC transporter 21 162 8.2E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 Gene3D G3DSA:3.40.50.300 1 239 4.1E-75 T 11-10-2018 APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 SMART SM00382 29 212 1.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 Gene3D G3DSA:2.40.50.100 240 354 1.8E-20 T 11-10-2018 APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 SUPERFAMILY SSF50331 237 359 4.37E-23 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_14630 a125b0dd1e660e95d6dd23beea622102 362 SUPERFAMILY SSF52540 4 244 2.66E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25870 027c1e05588f40dc2fa9f837f2abe7f0 163 Gene3D G3DSA:3.10.180.10 11 150 3.6E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_25870 027c1e05588f40dc2fa9f837f2abe7f0 163 SUPERFAMILY SSF54593 13 151 9.67E-24 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_25870 027c1e05588f40dc2fa9f837f2abe7f0 163 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 145 7.7E-11 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_07505 9b35cda3b2134c48c13839f2b06a93a2 297 SUPERFAMILY SSF161111 16 210 4.84E-54 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APT56_07505 9b35cda3b2134c48c13839f2b06a93a2 297 Gene3D G3DSA:1.20.1510.10 16 209 3.0E-43 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APT56_07505 9b35cda3b2134c48c13839f2b06a93a2 297 Pfam PF01545 Cation efflux family 18 209 1.3E-42 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT56_07505 9b35cda3b2134c48c13839f2b06a93a2 297 SUPERFAMILY SSF160240 214 286 8.63E-7 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 APT56_07505 9b35cda3b2134c48c13839f2b06a93a2 297 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 15 288 3.8E-83 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 6.8E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 6.8E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 268 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 SMART SM00342 189 272 2.1E-31 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 Pfam PF12833 Helix-turn-helix domain 195 273 5.3E-25 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 SUPERFAMILY SSF46689 225 273 3.76E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 SUPERFAMILY SSF46689 176 223 3.23E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 Pfam PF02311 AraC-like ligand binding domain 15 146 1.8E-18 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 Gene3D G3DSA:1.10.10.60 174 275 6.3E-32 T 11-10-2018 APT56_02210 9340c0eb44b6b4fa419576e966692c78 275 SUPERFAMILY SSF51215 25 154 3.66E-19 T 11-10-2018 IPR037923 Transcription regulator HTH-like APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 Gene3D G3DSA:3.40.50.720 2 257 4.3E-55 T 11-10-2018 APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 SUPERFAMILY SSF51735 9 255 2.45E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 1.2E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.2E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.2E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.2E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.2E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 254 1.7E-80 T 11-10-2018 APT56_22580 5c5036c92b2a93ea0c85fe924028e586 257 PIRSF PIRSF000094 4 257 2.3E-86 T 11-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 Pfam PF00204 DNA gyrase B 222 395 1.1E-32 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 Gene3D G3DSA:3.30.565.10 4 219 9.9E-68 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 SUPERFAMILY SSF55874 5 219 2.49E-60 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 7.1E-40 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR01098 Topoisomerase IV subunit B signature 372 397 7.1E-40 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR01098 Topoisomerase IV subunit B signature 458 479 7.1E-40 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR01098 Topoisomerase IV subunit B signature 321 336 7.1E-40 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR01098 Topoisomerase IV subunit B signature 348 371 7.1E-40 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR01098 Topoisomerase IV subunit B signature 178 195 7.1E-40 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR01098 Topoisomerase IV subunit B signature 304 320 7.1E-40 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR01098 Topoisomerase IV subunit B signature 196 217 7.1E-40 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 175 1.4E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 SMART SM00387 29 177 7.0E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 579 643 2.9E-26 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 Pfam PF01751 Toprim domain 423 537 4.7E-12 T 11-10-2018 IPR006171 TOPRIM domain APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 Gene3D G3DSA:3.40.50.670 400 646 5.7E-85 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 SUPERFAMILY SSF54211 222 397 2.66E-36 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 67 80 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 531 543 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 113 127 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 276 289 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 32 47 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 424 438 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 583 599 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 511 528 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 PRINTS PR00418 DNA topoisomerase II family signature 493 509 2.8E-60 T 11-10-2018 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 SMART SM00433 34 647 2.9E-188 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 SUPERFAMILY SSF56719 399 644 7.85E-75 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 ProSitePatterns PS00177 DNA topoisomerase II signature. 426 434 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 Gene3D G3DSA:3.30.230.10 220 399 2.7E-46 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 647 9.6E-220 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_09345 1980c55c3dc251f8bf8f77972ee991c1 653 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 651 44.742 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 SUPERFAMILY SSF63380 6 99 4.6E-25 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 Pfam PF00175 Oxidoreductase NAD-binding domain 113 228 2.5E-7 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 SUPERFAMILY SSF52343 102 256 3.8E-40 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 1.0E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 145 1.0E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 1.0E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 1.0E-6 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 Pfam PF00970 Oxidoreductase FAD-binding domain 16 98 1.4E-8 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 Gene3D G3DSA:2.40.30.10 1 97 1.8E-27 T 11-10-2018 APT56_14760 5dc7545593ab54d6af166f502f28f7b4 258 Gene3D G3DSA:3.40.50.80 100 254 9.6E-42 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_03840 ee1c9b52c719ccdd63d2d997dcb1ba91 111 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 104 3.7E-23 T 11-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 APT56_03840 ee1c9b52c719ccdd63d2d997dcb1ba91 111 Gene3D G3DSA:3.30.750.24 1 111 1.1E-28 T 11-10-2018 IPR036513 STAS domain superfamily APT56_03840 ee1c9b52c719ccdd63d2d997dcb1ba91 111 SUPERFAMILY SSF52091 1 108 2.75E-25 T 11-10-2018 IPR036513 STAS domain superfamily APT56_03840 ee1c9b52c719ccdd63d2d997dcb1ba91 111 Pfam PF01740 STAS domain 4 106 3.5E-18 T 11-10-2018 IPR002645 STAS domain APT56_22310 625629300206fdc7c19052b017fca27a 293 Gene3D G3DSA:3.30.200.20 4 104 1.1E-30 T 11-10-2018 APT56_22310 625629300206fdc7c19052b017fca27a 293 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 13 293 25.954 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_22310 625629300206fdc7c19052b017fca27a 293 ProSitePatterns PS01058 SAICAR synthetase signature 2. 205 213 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_22310 625629300206fdc7c19052b017fca27a 293 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 16 292 1.1E-82 T 11-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 APT56_22310 625629300206fdc7c19052b017fca27a 293 SUPERFAMILY SSF56104 6 291 5.56E-103 T 11-10-2018 APT56_22310 625629300206fdc7c19052b017fca27a 293 Gene3D G3DSA:3.30.470.20 106 249 1.4E-57 T 11-10-2018 APT56_22310 625629300206fdc7c19052b017fca27a 293 ProSitePatterns PS01057 SAICAR synthetase signature 1. 106 120 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_22310 625629300206fdc7c19052b017fca27a 293 Pfam PF01259 SAICAR synthetase 16 268 1.7E-102 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_08240 9190336d0808e684a2ed74ce8dc3598b 245 Gene3D G3DSA:1.10.10.10 105 148 4.1E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08240 9190336d0808e684a2ed74ce8dc3598b 245 Hamap MF_01114 Regulatory protein RecX [recX]. 101 244 13.782 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 APT56_08240 9190336d0808e684a2ed74ce8dc3598b 245 Pfam PF02631 RecX family 128 241 4.9E-27 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 APT56_08240 9190336d0808e684a2ed74ce8dc3598b 245 Gene3D G3DSA:1.10.10.10 197 241 1.2E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08240 9190336d0808e684a2ed74ce8dc3598b 245 Gene3D G3DSA:1.10.10.10 152 192 3.1E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 Pfam PF01872 RibD C-terminal domain 156 359 1.1E-44 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 Gene3D G3DSA:3.40.140.10 1 149 2.1E-47 T 11-10-2018 APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 13 360 1.2E-105 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 9 108 1.3E-19 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 SUPERFAMILY SSF53597 154 363 1.33E-55 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 56 97 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 SUPERFAMILY SSF53927 9 153 2.84E-46 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 Gene3D G3DSA:3.40.430.10 150 370 4.0E-65 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 155 365 2.9E-53 T 11-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 APT56_03550 539bac7141ff71e04bd8a6c9dab363aa 383 PIRSF PIRSF006769 5 369 6.3E-117 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 APT56_01390 2ab4c8dc9047f22133863f2d5000dbf3 268 Pfam PF00293 NUDIX domain 126 196 7.4E-11 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_01390 2ab4c8dc9047f22133863f2d5000dbf3 268 Gene3D G3DSA:3.90.79.10 117 263 1.2E-43 T 11-10-2018 APT56_01390 2ab4c8dc9047f22133863f2d5000dbf3 268 SUPERFAMILY SSF55811 100 263 1.62E-27 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_01390 2ab4c8dc9047f22133863f2d5000dbf3 268 Gene3D G3DSA:3.30.750.160 27 202 1.2E-43 T 11-10-2018 APT56_10770 c30b0d6087e0911771517317ec6b2d4e 151 SUPERFAMILY SSF46785 8 143 1.61E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10770 c30b0d6087e0911771517317ec6b2d4e 151 SMART SM00347 25 129 1.9E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_10770 c30b0d6087e0911771517317ec6b2d4e 151 Pfam PF12802 MarR family 31 92 3.1E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_10770 c30b0d6087e0911771517317ec6b2d4e 151 Gene3D G3DSA:1.10.10.10 2 146 6.2E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10770 c30b0d6087e0911771517317ec6b2d4e 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 1.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_10770 c30b0d6087e0911771517317ec6b2d4e 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 1.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_10770 c30b0d6087e0911771517317ec6b2d4e 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 1.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_21075 c5d0687408a75f4c2f6d3fc30c38cde3 53 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 3 45 5.6E-17 T 11-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type APT56_21075 c5d0687408a75f4c2f6d3fc30c38cde3 53 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 47 5.4E-13 T 11-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type APT56_06595 32ed37da6b3a1825c6c25ac94fa77c82 254 SUPERFAMILY SSF52540 6 243 1.85E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06595 32ed37da6b3a1825c6c25ac94fa77c82 254 Pfam PF00005 ABC transporter 25 173 1.4E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_06595 32ed37da6b3a1825c6c25ac94fa77c82 254 SMART SM00382 32 218 7.4E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_06595 32ed37da6b3a1825c6c25ac94fa77c82 254 Gene3D G3DSA:3.40.50.300 3 246 1.2E-56 T 11-10-2018 APT56_06595 32ed37da6b3a1825c6c25ac94fa77c82 254 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_24985 9b40e22b8884492231ec27fbd5256ef6 373 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 30 348 6.0E-133 T 11-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC APT56_24985 9b40e22b8884492231ec27fbd5256ef6 373 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 338 7.5E-33 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_03970 ea5e70246c511fa29f33c8fdf52ec84b 163 Pfam PF05232 Chlorhexidine efflux transporter 6 69 2.1E-24 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter APT56_03970 ea5e70246c511fa29f33c8fdf52ec84b 163 Pfam PF05232 Chlorhexidine efflux transporter 74 137 2.3E-26 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter APT56_00680 144129d02e470474e200dff8c87e1a14 218 Gene3D G3DSA:1.10.3720.10 5 214 2.6E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00680 144129d02e470474e200dff8c87e1a14 218 SUPERFAMILY SSF161098 13 198 1.1E-36 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00680 144129d02e470474e200dff8c87e1a14 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 107 3.3E-27 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_00680 144129d02e470474e200dff8c87e1a14 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 212 3.6E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12990 c9482884022c04f55015f14fab08d9bc 307 Gene3D G3DSA:1.10.10.60 206 306 1.7E-25 T 11-10-2018 APT56_12990 c9482884022c04f55015f14fab08d9bc 307 SUPERFAMILY SSF46689 205 254 9.84E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_12990 c9482884022c04f55015f14fab08d9bc 307 SMART SM00342 221 303 1.0E-29 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_12990 c9482884022c04f55015f14fab08d9bc 307 Pfam PF12852 Cupin 18 188 1.8E-31 T 11-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain APT56_12990 c9482884022c04f55015f14fab08d9bc 307 SUPERFAMILY SSF46689 257 305 2.04E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_12990 c9482884022c04f55015f14fab08d9bc 307 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 258 299 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_12990 c9482884022c04f55015f14fab08d9bc 307 Pfam PF12833 Helix-turn-helix domain 227 304 3.0E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_11445 98f230d2a096883d498f040864a031fc 329 SUPERFAMILY SSF53335 103 314 2.61E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_11445 98f230d2a096883d498f040864a031fc 329 Gene3D G3DSA:3.40.50.150 96 319 3.2E-47 T 11-10-2018 APT56_11445 98f230d2a096883d498f040864a031fc 329 Pfam PF16864 Dimerisation domain 9 88 2.5E-12 T 11-10-2018 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain APT56_11445 98f230d2a096883d498f040864a031fc 329 PIRSF PIRSF005739 8 324 4.9E-14 T 11-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 APT56_11445 98f230d2a096883d498f040864a031fc 329 Pfam PF00891 O-methyltransferase 103 310 3.8E-25 T 11-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 APT56_11445 98f230d2a096883d498f040864a031fc 329 Gene3D G3DSA:1.10.10.10 4 95 1.2E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11445 98f230d2a096883d498f040864a031fc 329 SUPERFAMILY SSF46785 6 85 2.18E-8 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00125 dc5cfa1c46fe227be280702288ece170 195 Gene3D G3DSA:2.60.120.10 47 190 6.6E-24 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_00125 dc5cfa1c46fe227be280702288ece170 195 SUPERFAMILY SSF51182 11 190 1.54E-37 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_18130 2fc57554b4ac817c2b3ba4605eb576d4 427 Gene3D G3DSA:1.20.1250.20 11 209 4.7E-26 T 11-10-2018 APT56_18130 2fc57554b4ac817c2b3ba4605eb576d4 427 Gene3D G3DSA:1.20.1250.20 233 424 9.4E-21 T 11-10-2018 APT56_18130 2fc57554b4ac817c2b3ba4605eb576d4 427 Pfam PF07690 Major Facilitator Superfamily 25 360 5.5E-35 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_18130 2fc57554b4ac817c2b3ba4605eb576d4 427 SUPERFAMILY SSF103473 8 421 8.24E-58 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_24535 25320f54d7b47d06f376c17282c7a411 559 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 28 50 6.0E-36 T 11-10-2018 APT56_24535 25320f54d7b47d06f376c17282c7a411 559 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 316 332 6.0E-36 T 11-10-2018 APT56_24535 25320f54d7b47d06f376c17282c7a411 559 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 316 6.0E-36 T 11-10-2018 APT56_24535 25320f54d7b47d06f376c17282c7a411 559 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 176 191 6.0E-36 T 11-10-2018 APT56_24535 25320f54d7b47d06f376c17282c7a411 559 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 334 352 6.0E-36 T 11-10-2018 APT56_24535 25320f54d7b47d06f376c17282c7a411 559 SUPERFAMILY SSF51905 28 399 7.18E-64 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_24535 25320f54d7b47d06f376c17282c7a411 559 Gene3D G3DSA:3.50.50.60 29 362 3.8E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_24535 25320f54d7b47d06f376c17282c7a411 559 Gene3D G3DSA:3.30.70.2450 205 290 3.8E-95 T 11-10-2018 APT56_24535 25320f54d7b47d06f376c17282c7a411 559 Pfam PF01494 FAD binding domain 28 364 1.6E-65 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_24535 25320f54d7b47d06f376c17282c7a411 559 Gene3D G3DSA:3.40.30.120 407 559 4.0E-11 T 11-10-2018 APT56_00525 684093d2895439d9694c89b04216f0ac 65 Pfam PF13683 Integrase core domain 20 63 4.5E-14 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APT56_00525 684093d2895439d9694c89b04216f0ac 65 Gene3D G3DSA:3.30.420.10 3 64 4.0E-6 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_00525 684093d2895439d9694c89b04216f0ac 65 SUPERFAMILY SSF53098 6 56 2.91E-11 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_24085 709806cf57d9f8671b49d9e8ee2757b4 119 Gene3D G3DSA:3.40.50.12740 1 118 2.6E-27 T 11-10-2018 APT56_24085 709806cf57d9f8671b49d9e8ee2757b4 119 SUPERFAMILY SSF52172 1 112 1.11E-27 T 11-10-2018 IPR011006 CheY-like superfamily APT56_24085 709806cf57d9f8671b49d9e8ee2757b4 119 SMART SM00448 1 108 3.9E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24085 709806cf57d9f8671b49d9e8ee2757b4 119 Pfam PF00072 Response regulator receiver domain 1 108 5.0E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 SUPERFAMILY SSF46785 1 87 2.18E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 SUPERFAMILY SSF53850 85 292 1.55E-19 T 11-10-2018 APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 Pfam PF03466 LysR substrate binding domain 88 288 2.0E-18 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.0E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.0E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.0E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 Gene3D G3DSA:3.40.190.290 102 289 5.9E-18 T 11-10-2018 APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.6E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_21935 11e326aa7dfa3d93288a30a6d5bc1757 302 Gene3D G3DSA:1.10.10.10 1 89 6.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 SUPERFAMILY SSF52317 1 235 6.23E-56 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 Pfam PF02540 NAD synthase 221 289 2.0E-8 T 11-10-2018 IPR022310 NAD/GMP synthase APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 2 530 54.592 T 11-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 SUPERFAMILY SSF54810 403 530 3.66E-47 T 11-10-2018 APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 5 202 1.1E-69 T 11-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 Pfam PF00958 GMP synthase C terminal domain 444 529 1.5E-41 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 Pfam PF00117 Glutamine amidotransferase class-I 7 196 2.6E-35 T 11-10-2018 IPR017926 Glutamine amidotransferase APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 Gene3D G3DSA:3.40.50.880 4 204 3.7E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 211 530 2.2E-143 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 SUPERFAMILY SSF52402 195 417 3.09E-56 T 11-10-2018 APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 Gene3D G3DSA:3.30.300.10 404 530 4.2E-51 T 11-10-2018 APT56_16715 471fead77c6ccc6a95bbb0a11d507e97 530 Gene3D G3DSA:3.40.50.620 207 403 3.7E-74 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_25505 731970afb70074485c5b018ce032ce23 246 Pfam PF00005 ABC transporter 20 174 3.7E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_25505 731970afb70074485c5b018ce032ce23 246 SUPERFAMILY SSF52540 4 232 3.62E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25505 731970afb70074485c5b018ce032ce23 246 Gene3D G3DSA:3.40.50.300 2 239 7.0E-60 T 11-10-2018 APT56_25505 731970afb70074485c5b018ce032ce23 246 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_25505 731970afb70074485c5b018ce032ce23 246 SMART SM00382 29 230 1.8E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 153 218 1.3E-7 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 41 111 2.7E-6 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 PRINTS PR00605 Class IC cytochrome C signature 197 219 5.6E-5 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 PRINTS PR00605 Class IC cytochrome C signature 47 58 5.6E-5 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 SUPERFAMILY SSF46626 136 221 9.46E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 SUPERFAMILY SSF46626 47 118 1.1E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 Gene3D G3DSA:1.10.760.10 27 115 1.2E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 Gene3D G3DSA:1.10.760.10 132 222 7.1E-25 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14910 31e95ef89a2d302c5af37b5dec7e60d1 241 PIRSF PIRSF000005 6 224 6.8E-61 T 11-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 APT56_08760 96fcf788319db4ce60d5f51e4433ddb9 414 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 408 6.2E-104 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_08760 96fcf788319db4ce60d5f51e4433ddb9 414 Gene3D G3DSA:3.90.1150.10 275 410 1.0E-41 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_08760 96fcf788319db4ce60d5f51e4433ddb9 414 PIRSF PIRSF001434 1 411 4.5E-117 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_08760 96fcf788319db4ce60d5f51e4433ddb9 414 SUPERFAMILY SSF53383 5 409 6.84E-86 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_08760 96fcf788319db4ce60d5f51e4433ddb9 414 Gene3D G3DSA:3.40.640.10 5 274 1.9E-67 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_05395 2a3fe18f24d138a8e52a1464c597c06d 389 Gene3D G3DSA:3.50.50.60 5 357 8.7E-62 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_05395 2a3fe18f24d138a8e52a1464c597c06d 389 SUPERFAMILY SSF51905 5 370 1.98E-53 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_05395 2a3fe18f24d138a8e52a1464c597c06d 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 147 162 8.6E-17 T 11-10-2018 APT56_05395 2a3fe18f24d138a8e52a1464c597c06d 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.6E-17 T 11-10-2018 APT56_05395 2a3fe18f24d138a8e52a1464c597c06d 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 8.6E-17 T 11-10-2018 APT56_05395 2a3fe18f24d138a8e52a1464c597c06d 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 8.6E-17 T 11-10-2018 APT56_05395 2a3fe18f24d138a8e52a1464c597c06d 389 Pfam PF01494 FAD binding domain 5 165 7.9E-11 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_05395 2a3fe18f24d138a8e52a1464c597c06d 389 Pfam PF01494 FAD binding domain 275 315 1.0E-5 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_09655 1ab2e6756fb2053db5d04256ab776382 552 SUPERFAMILY SSF52540 185 481 3.92E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09655 1ab2e6756fb2053db5d04256ab776382 552 Pfam PF00437 Type II/IV secretion system protein 199 475 4.2E-82 T 11-10-2018 IPR001482 Type II/IV secretion system protein APT56_09655 1ab2e6756fb2053db5d04256ab776382 552 Gene3D G3DSA:3.30.450.380 116 293 1.9E-36 T 11-10-2018 APT56_09655 1ab2e6756fb2053db5d04256ab776382 552 Gene3D G3DSA:2.60.200.20 9 96 1.6E-17 T 11-10-2018 APT56_09655 1ab2e6756fb2053db5d04256ab776382 552 SMART SM00240 21 71 8.4E-8 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT56_09655 1ab2e6756fb2053db5d04256ab776382 552 SUPERFAMILY SSF49879 20 92 7.65E-19 T 11-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 APT56_09655 1ab2e6756fb2053db5d04256ab776382 552 Gene3D G3DSA:3.40.50.300 298 512 5.4E-70 T 11-10-2018 APT56_09655 1ab2e6756fb2053db5d04256ab776382 552 Pfam PF00498 FHA domain 23 86 8.3E-12 T 11-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 APT56_05550 ec8b53907b6236b3757ec9cf2b1b7602 178 Pfam PF04355 SmpA / OmlA family 42 111 7.7E-25 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 APT56_05550 ec8b53907b6236b3757ec9cf2b1b7602 178 Gene3D G3DSA:3.30.1450.10 48 122 3.1E-27 T 11-10-2018 IPR037873 BamE-like APT56_05550 ec8b53907b6236b3757ec9cf2b1b7602 178 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 14 120 27.104 T 11-10-2018 IPR026592 Outer membrane protein assembly factor BamE APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 SMART SM00228 286 369 1.2E-12 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 Gene3D G3DSA:2.30.42.10 281 382 1.1E-26 T 11-10-2018 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 Pfam PF13365 Trypsin-like peptidase domain 112 247 2.8E-35 T 11-10-2018 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 Gene3D G3DSA:2.40.10.120 57 280 3.3E-75 T 11-10-2018 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 SUPERFAMILY SSF50494 57 281 5.83E-64 T 11-10-2018 IPR009003 Peptidase S1, PA clan APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 SUPERFAMILY SSF50156 244 370 1.58E-22 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 PRINTS PR00834 HtrA/DegQ protease family signature 121 133 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 PRINTS PR00834 HtrA/DegQ protease family signature 218 235 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 PRINTS PR00834 HtrA/DegQ protease family signature 142 162 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 PRINTS PR00834 HtrA/DegQ protease family signature 183 207 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 PRINTS PR00834 HtrA/DegQ protease family signature 327 339 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 PRINTS PR00834 HtrA/DegQ protease family signature 240 257 9.7E-55 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_01160 b5271ed49fd7ca6bdeaa00e1a51561bb 386 Pfam PF13180 PDZ domain 286 377 1.8E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_09360 75afdac511ce58d09a89ebffb6a45b23 207 SUPERFAMILY SSF46689 6 76 6.16E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_09360 75afdac511ce58d09a89ebffb6a45b23 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.8E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_09360 75afdac511ce58d09a89ebffb6a45b23 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.8E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_09360 75afdac511ce58d09a89ebffb6a45b23 207 Gene3D G3DSA:1.10.357.10 2 200 2.5E-37 T 11-10-2018 APT56_09360 75afdac511ce58d09a89ebffb6a45b23 207 SUPERFAMILY SSF48498 81 197 5.78E-8 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_09360 75afdac511ce58d09a89ebffb6a45b23 207 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 86 196 4.5E-7 T 11-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal APT56_09360 75afdac511ce58d09a89ebffb6a45b23 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 2.9E-17 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_27465 ed8bd4230c45ecf5de7382a47ceed215 302 Pfam PF00487 Fatty acid desaturase 42 259 1.7E-21 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 Gene3D G3DSA:1.10.10.10 1 57 1.1E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 SUPERFAMILY SSF46785 4 63 1.95E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 Pfam PF13404 AsnC-type helix-turn-helix domain 4 45 8.0E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 1.1E-9 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 1.1E-9 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 1.1E-9 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 Pfam PF01037 Lrp/AsnC ligand binding domain 86 138 1.8E-13 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 SUPERFAMILY SSF54909 66 148 7.64E-14 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 Gene3D G3DSA:3.30.70.920 58 136 5.9E-17 T 11-10-2018 APT56_14490 eb1acaa121868dfbcf5718623422e9a3 151 SMART SM00344 4 110 1.7E-30 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_19625 64f4d27084745f3f01755c0a26a0312e 234 Gene3D G3DSA:1.10.10.10 8 75 3.2E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19625 64f4d27084745f3f01755c0a26a0312e 234 Gene3D G3DSA:1.20.120.530 78 209 1.8E-22 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_19625 64f4d27084745f3f01755c0a26a0312e 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 3.8E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19625 64f4d27084745f3f01755c0a26a0312e 234 SUPERFAMILY SSF48008 80 216 1.94E-19 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_19625 64f4d27084745f3f01755c0a26a0312e 234 SMART SM00895 84 209 4.1E-14 T 11-10-2018 IPR011711 GntR, C-terminal APT56_19625 64f4d27084745f3f01755c0a26a0312e 234 SMART SM00345 16 74 1.0E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19625 64f4d27084745f3f01755c0a26a0312e 234 SUPERFAMILY SSF46785 6 78 8.46E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_19625 64f4d27084745f3f01755c0a26a0312e 234 Pfam PF07729 FCD domain 84 205 2.0E-19 T 11-10-2018 IPR011711 GntR, C-terminal APT56_11020 b694574b0d42639b05aec2e64beb8044 663 Pfam PF01578 Cytochrome C assembly protein 89 295 5.4E-51 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 638 3.8E-121 T 11-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 1.4E-53 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 1.4E-53 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 1.4E-53 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.4E-53 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.4E-53 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 1.4E-53 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.4E-53 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 3.3E-90 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 3.3E-90 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 3.3E-90 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 3.3E-90 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 3.3E-90 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 3.3E-90 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 3.3E-90 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 3.3E-90 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11020 b694574b0d42639b05aec2e64beb8044 663 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 54 641 6.3E-216 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 6 413 1.5E-128 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 SUPERFAMILY SSF51735 165 316 8.06E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 SUPERFAMILY SSF69075 319 418 2.09E-27 T 11-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 SUPERFAMILY SSF69742 5 160 9.68E-44 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 4 417 29.188 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 322 417 2.4E-27 T 11-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 PIRSF PIRSF000445 3 424 3.5E-146 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 174 306 2.8E-43 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 9 158 2.3E-45 T 11-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 Gene3D G3DSA:3.30.460.30 3 160 6.0E-52 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 Gene3D G3DSA:3.40.50.720 163 314 8.5E-42 T 11-10-2018 APT56_26155 2c9eebad58632d27d0215a3c6e50d089 424 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 101 124 - T 11-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APT56_26675 4deada8cd52fb51db313b98bc66bd547 477 Gene3D G3DSA:1.10.10.10 1 98 6.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26675 4deada8cd52fb51db313b98bc66bd547 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 1.3E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26675 4deada8cd52fb51db313b98bc66bd547 477 SUPERFAMILY SSF46785 2 70 5.06E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26675 4deada8cd52fb51db313b98bc66bd547 477 Gene3D G3DSA:3.40.640.10 142 360 1.5E-107 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_26675 4deada8cd52fb51db313b98bc66bd547 477 SMART SM00345 7 66 7.9E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26675 4deada8cd52fb51db313b98bc66bd547 477 Pfam PF00155 Aminotransferase class I and II 148 449 2.5E-34 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_26675 4deada8cd52fb51db313b98bc66bd547 477 Gene3D G3DSA:3.90.1150.10 99 465 1.5E-107 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_26675 4deada8cd52fb51db313b98bc66bd547 477 SUPERFAMILY SSF53383 96 467 4.08E-98 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_23840 8af7bcc0f9a2dadec88942ba7403aafb 418 PRINTS PR01035 Tetracycline resistance protein signature 96 120 5.1E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23840 8af7bcc0f9a2dadec88942ba7403aafb 418 PRINTS PR01035 Tetracycline resistance protein signature 358 381 5.1E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23840 8af7bcc0f9a2dadec88942ba7403aafb 418 PRINTS PR01035 Tetracycline resistance protein signature 34 50 5.1E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23840 8af7bcc0f9a2dadec88942ba7403aafb 418 PRINTS PR01035 Tetracycline resistance protein signature 123 144 5.1E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23840 8af7bcc0f9a2dadec88942ba7403aafb 418 PRINTS PR01035 Tetracycline resistance protein signature 153 175 5.1E-8 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_23840 8af7bcc0f9a2dadec88942ba7403aafb 418 Pfam PF07690 Major Facilitator Superfamily 29 310 1.0E-34 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_23840 8af7bcc0f9a2dadec88942ba7403aafb 418 SUPERFAMILY SSF103473 22 412 2.35E-65 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_23840 8af7bcc0f9a2dadec88942ba7403aafb 418 Gene3D G3DSA:1.20.1250.20 18 404 4.4E-62 T 11-10-2018 APT56_03140 56d4c3de7956c116742450bbd97e9b73 425 Gene3D G3DSA:3.90.1150.10 7 418 1.5E-174 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_03140 56d4c3de7956c116742450bbd97e9b73 425 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_03140 56d4c3de7956c116742450bbd97e9b73 425 Gene3D G3DSA:3.40.640.10 69 317 1.5E-174 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_03140 56d4c3de7956c116742450bbd97e9b73 425 Pfam PF00202 Aminotransferase class-III 32 394 2.0E-76 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_03140 56d4c3de7956c116742450bbd97e9b73 425 SUPERFAMILY SSF53383 2 423 5.91E-132 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_03140 56d4c3de7956c116742450bbd97e9b73 425 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 425 104.068 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 APT56_03140 56d4c3de7956c116742450bbd97e9b73 425 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 4 424 2.1E-185 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 SUPERFAMILY SSF46785 8 115 5.85E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 Gene3D G3DSA:3.40.190.290 96 296 4.0E-41 T 11-10-2018 APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 7.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 7.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 7.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 Gene3D G3DSA:1.10.10.10 7 93 1.3E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 SUPERFAMILY SSF53850 93 293 9.29E-39 T 11-10-2018 APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 1.6E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03390 1f9966ba91b29180d633b710b8c911e3 299 Pfam PF03466 LysR substrate binding domain 93 291 1.2E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 228 45.551 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 SUPERFAMILY SSF53254 1 245 8.9E-80 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 SMART SM00855 3 189 8.8E-30 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 Gene3D G3DSA:3.40.50.1240 1 248 9.8E-92 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 2 246 2.0E-118 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 PIRSF PIRSF000709 2 111 7.9E-8 T 11-10-2018 APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 PIRSF PIRSF000709 132 221 0.077 T 11-10-2018 APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 11-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 121 1.6E-30 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APT56_26390 76cb60e8ea35ddefd8baeb3c30ae8a86 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 128 219 2.3E-6 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APT56_11460 fb31ce99492790ef3c28183344afcdd8 318 SUPERFAMILY SSF51412 16 313 7.48E-32 T 11-10-2018 APT56_11460 fb31ce99492790ef3c28183344afcdd8 318 Gene3D G3DSA:3.20.20.70 9 318 8.2E-56 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_11460 fb31ce99492790ef3c28183344afcdd8 318 Pfam PF03060 Nitronate monooxygenase 13 76 4.0E-11 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APT56_11460 fb31ce99492790ef3c28183344afcdd8 318 Pfam PF03060 Nitronate monooxygenase 87 317 2.0E-11 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APT56_12365 b5cf01718fe7b7ea7e08e13c373d8ae9 245 Gene3D G3DSA:3.40.50.880 21 242 9.8E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_12365 b5cf01718fe7b7ea7e08e13c373d8ae9 245 SUPERFAMILY SSF52317 45 212 9.03E-43 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_12365 b5cf01718fe7b7ea7e08e13c373d8ae9 245 Pfam PF00117 Glutamine amidotransferase class-I 44 197 1.1E-20 T 11-10-2018 IPR017926 Glutamine amidotransferase APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 SUPERFAMILY SSF55931 103 469 9.51E-140 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 469 1.4E-198 T 11-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 260 275 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 15 96 9.4E-30 T 11-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 SMART SM01230 103 380 5.0E-149 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 ProSitePatterns PS00180 Glutamine synthetase signature 1. 51 69 - T 11-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 Pfam PF00120 Glutamine synthetase, catalytic domain 104 467 3.5E-139 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 Gene3D G3DSA:3.30.590.10 106 458 1.5E-146 T 11-10-2018 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 387 399 - T 11-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 SUPERFAMILY SSF54368 4 98 1.96E-34 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT56_14820 575ea7c3751cf68d2cb99a9ba232cef6 470 Gene3D G3DSA:3.10.20.70 3 105 8.9E-37 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT56_21415 04f3d441bc47b013cd3d33263d3c20cc 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 280 3.7E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_21415 04f3d441bc47b013cd3d33263d3c20cc 285 SUPERFAMILY SSF161098 89 272 3.79E-41 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21415 04f3d441bc47b013cd3d33263d3c20cc 285 Gene3D G3DSA:1.10.3720.10 86 279 9.3E-35 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 Pfam PF00563 EAL domain 415 638 3.9E-32 T 11-10-2018 IPR001633 EAL domain APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 SMART SM00052 408 639 6.8E-10 T 11-10-2018 IPR001633 EAL domain APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 Pfam PF16448 LapD/MoxY periplasmic domain 27 147 1.7E-9 T 11-10-2018 IPR032244 LapD/MoxY, periplasmic domain APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 SMART SM00267 225 398 4.6E-12 T 11-10-2018 IPR000160 GGDEF domain APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 Pfam PF00990 Diguanylate cyclase, GGDEF domain 238 390 3.6E-17 T 11-10-2018 IPR000160 GGDEF domain APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 Gene3D G3DSA:3.30.70.270 219 396 7.1E-28 T 11-10-2018 APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 Gene3D G3DSA:3.20.20.450 407 644 9.1E-37 T 11-10-2018 IPR035919 EAL domain superfamily APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 SUPERFAMILY SSF141868 414 638 2.75E-31 T 11-10-2018 IPR035919 EAL domain superfamily APT56_09715 c5d5a37cdc0161ce5e713ee44363d293 657 SUPERFAMILY SSF55073 242 396 4.0E-19 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_22135 7b579b29e517813f7868de36463120a1 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 8.9E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22135 7b579b29e517813f7868de36463120a1 303 Gene3D G3DSA:3.40.190.10 104 293 6.7E-45 T 11-10-2018 APT56_22135 7b579b29e517813f7868de36463120a1 303 SUPERFAMILY SSF46785 5 82 8.84E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22135 7b579b29e517813f7868de36463120a1 303 Gene3D G3DSA:3.40.190.10 164 266 6.7E-45 T 11-10-2018 APT56_22135 7b579b29e517813f7868de36463120a1 303 SUPERFAMILY SSF53850 93 299 4.07E-31 T 11-10-2018 APT56_22135 7b579b29e517813f7868de36463120a1 303 Pfam PF03466 LysR substrate binding domain 93 297 3.7E-30 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_22135 7b579b29e517813f7868de36463120a1 303 Gene3D G3DSA:1.10.10.10 6 86 7.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22135 7b579b29e517813f7868de36463120a1 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 6.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22135 7b579b29e517813f7868de36463120a1 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 6.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22135 7b579b29e517813f7868de36463120a1 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 6.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25775 ddc5829f3d8294215ee4f75f862c159d 314 Pfam PF05229 Spore Coat Protein U domain 182 306 1.1E-20 T 11-10-2018 IPR007893 Spore coat protein U APT56_25775 ddc5829f3d8294215ee4f75f862c159d 314 Pfam PF05229 Spore Coat Protein U domain 22 156 5.0E-12 T 11-10-2018 IPR007893 Spore coat protein U APT56_25775 ddc5829f3d8294215ee4f75f862c159d 314 SMART SM00972 94 156 2.1E-4 T 11-10-2018 IPR007893 Spore coat protein U APT56_25775 ddc5829f3d8294215ee4f75f862c159d 314 SMART SM00972 256 311 0.34 T 11-10-2018 IPR007893 Spore coat protein U APT56_19585 86c40c476e0df2b67453171acca5bf57 219 Gene3D G3DSA:1.10.3720.10 7 217 1.1E-47 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19585 86c40c476e0df2b67453171acca5bf57 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 214 1.3E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_19585 86c40c476e0df2b67453171acca5bf57 219 SUPERFAMILY SSF161098 13 200 1.1E-40 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19585 86c40c476e0df2b67453171acca5bf57 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 108 2.2E-23 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_01230 fff655630ec929b7affaf9f60bfc68f1 224 Pfam PF01634 ATP phosphoribosyltransferase 58 214 7.5E-49 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 APT56_01230 fff655630ec929b7affaf9f60bfc68f1 224 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 8 221 55.171 T 11-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 APT56_01230 fff655630ec929b7affaf9f60bfc68f1 224 Gene3D G3DSA:3.40.190.10 10 210 2.4E-70 T 11-10-2018 APT56_01230 fff655630ec929b7affaf9f60bfc68f1 224 Gene3D G3DSA:3.40.190.10 103 189 2.4E-70 T 11-10-2018 APT56_01230 fff655630ec929b7affaf9f60bfc68f1 224 SUPERFAMILY SSF53850 8 218 2.17E-65 T 11-10-2018 APT56_01230 fff655630ec929b7affaf9f60bfc68f1 224 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 9 197 7.0E-60 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 APT56_01230 fff655630ec929b7affaf9f60bfc68f1 224 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 11-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 9.8E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 Pfam PF03466 LysR substrate binding domain 90 282 3.3E-18 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 SUPERFAMILY SSF53850 94 288 4.52E-24 T 11-10-2018 APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 Gene3D G3DSA:3.40.190.290 94 255 3.2E-23 T 11-10-2018 APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 SUPERFAMILY SSF46785 4 86 7.26E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16360 328d7f28a0617d7ecbb33cba4d7b0029 291 Gene3D G3DSA:1.10.10.10 1 85 1.1E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04790 1c18ee5f9a94da1d7acf505ec1bbaefb 266 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 10 266 5.6E-105 T 11-10-2018 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 APT56_04790 1c18ee5f9a94da1d7acf505ec1bbaefb 266 Gene3D G3DSA:3.90.226.10 2 207 6.8E-68 T 11-10-2018 APT56_04790 1c18ee5f9a94da1d7acf505ec1bbaefb 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 265 1.1E-63 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_04790 1c18ee5f9a94da1d7acf505ec1bbaefb 266 SUPERFAMILY SSF52096 5 266 3.89E-80 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_04790 1c18ee5f9a94da1d7acf505ec1bbaefb 266 Gene3D G3DSA:1.10.12.10 209 266 1.4E-20 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_05865 7ceebf12513221dc822aa2a00bcf12fd 256 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 34.72 T 11-10-2018 IPR005583 Peroxide stress protein YaaA APT56_05865 7ceebf12513221dc822aa2a00bcf12fd 256 Pfam PF03883 Peroxide stress protein YaaA 1 243 1.1E-89 T 11-10-2018 IPR005583 Peroxide stress protein YaaA APT56_18645 a82a0638c4c93586eab5f304a64a7f6c 332 Gene3D G3DSA:3.40.190.10 134 257 1.5E-102 T 11-10-2018 APT56_18645 a82a0638c4c93586eab5f304a64a7f6c 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 327 1.8E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18645 a82a0638c4c93586eab5f304a64a7f6c 332 PIRSF PIRSF017082 1 332 1.0E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18645 a82a0638c4c93586eab5f304a64a7f6c 332 Gene3D G3DSA:3.40.190.150 37 322 1.5E-102 T 11-10-2018 APT56_18645 a82a0638c4c93586eab5f304a64a7f6c 332 SUPERFAMILY SSF53850 123 297 9.77E-14 T 11-10-2018 APT56_07215 3bc0247be842cca8fcea05b8a9b2f6ce 410 Gene3D G3DSA:3.30.70.360 196 316 3.2E-84 T 11-10-2018 APT56_07215 3bc0247be842cca8fcea05b8a9b2f6ce 410 SUPERFAMILY SSF55031 196 312 6.8E-24 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_07215 3bc0247be842cca8fcea05b8a9b2f6ce 410 Gene3D G3DSA:3.40.630.10 28 405 3.2E-84 T 11-10-2018 APT56_07215 3bc0247be842cca8fcea05b8a9b2f6ce 410 Pfam PF01546 Peptidase family M20/M25/M40 90 404 5.6E-26 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_07215 3bc0247be842cca8fcea05b8a9b2f6ce 410 Pfam PF07687 Peptidase dimerisation domain 192 302 4.0E-20 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_07215 3bc0247be842cca8fcea05b8a9b2f6ce 410 SUPERFAMILY SSF53187 7 407 2.4E-50 T 11-10-2018 APT56_07215 3bc0247be842cca8fcea05b8a9b2f6ce 410 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 89 98 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 247 1.4E-67 T 11-10-2018 APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 Gene3D G3DSA:3.40.50.720 5 250 2.4E-85 T 11-10-2018 APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 SUPERFAMILY SSF51735 9 249 1.99E-84 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 192 2.3E-4 T 11-10-2018 APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.4E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.4E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.4E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 13 248 3.0E-98 T 11-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.3E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.3E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 2.3E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.3E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.3E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06790 69b5c1b64ee3598edf902b00f1d8d98a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.3E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04770 50781b401f5d954754b66788cbde26a5 390 SUPERFAMILY SSF53901 28 334 2.88E-25 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_04770 50781b401f5d954754b66788cbde26a5 390 SUPERFAMILY SSF53901 235 376 4.74E-28 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_04770 50781b401f5d954754b66788cbde26a5 390 Pfam PF02803 Thiolase, C-terminal domain 267 367 4.6E-7 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_04770 50781b401f5d954754b66788cbde26a5 390 PIRSF PIRSF000429 7 384 2.5E-29 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_04770 50781b401f5d954754b66788cbde26a5 390 Gene3D G3DSA:3.40.47.10 4 386 8.5E-114 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_01185 20fb82e7fe33b26fc9579b3722b92a8e 122 ProSitePatterns PS00892 HIT domain signature. 91 109 - T 11-10-2018 IPR019808 Histidine triad, conserved site APT56_01185 20fb82e7fe33b26fc9579b3722b92a8e 122 Pfam PF01230 HIT domain 13 111 8.6E-26 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_01185 20fb82e7fe33b26fc9579b3722b92a8e 122 SUPERFAMILY SSF54197 2 114 3.97E-40 T 11-10-2018 IPR036265 HIT-like superfamily APT56_01185 20fb82e7fe33b26fc9579b3722b92a8e 122 Gene3D G3DSA:3.30.428.10 1 115 1.1E-41 T 11-10-2018 IPR036265 HIT-like superfamily APT56_01185 20fb82e7fe33b26fc9579b3722b92a8e 122 PRINTS PR00332 Histidine triad family signature 98 108 7.8E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_01185 20fb82e7fe33b26fc9579b3722b92a8e 122 PRINTS PR00332 Histidine triad family signature 27 45 7.8E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_01185 20fb82e7fe33b26fc9579b3722b92a8e 122 PRINTS PR00332 Histidine triad family signature 6 22 7.8E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 SUPERFAMILY SSF52402 146 284 5.69E-25 T 11-10-2018 APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 SUPERFAMILY SSF52402 7 144 2.51E-27 T 11-10-2018 APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 Gene3D G3DSA:3.40.50.620 145 288 6.5E-26 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 Gene3D G3DSA:3.40.50.620 6 144 6.2E-27 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 Pfam PF00582 Universal stress protein family 8 141 3.2E-24 T 11-10-2018 IPR006016 UspA APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 Pfam PF00582 Universal stress protein family 148 284 1.5E-21 T 11-10-2018 IPR006016 UspA APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 PRINTS PR01438 Universal stress protein signature 244 256 2.7E-13 T 11-10-2018 IPR006015 Universal stress protein A APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 PRINTS PR01438 Universal stress protein signature 148 166 2.7E-13 T 11-10-2018 IPR006015 Universal stress protein A APT56_02530 3754327bda8110c7bfef4b711b69eb72 289 PRINTS PR01438 Universal stress protein signature 262 284 2.7E-13 T 11-10-2018 IPR006015 Universal stress protein A APT56_21085 ff5e42ed01f0dff6ffa3bfa63e615b32 422 Gene3D G3DSA:3.40.640.10 62 326 1.1E-152 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_21085 ff5e42ed01f0dff6ffa3bfa63e615b32 422 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_21085 ff5e42ed01f0dff6ffa3bfa63e615b32 422 PIRSF PIRSF000521 18 420 1.2E-29 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_21085 ff5e42ed01f0dff6ffa3bfa63e615b32 422 SUPERFAMILY SSF53383 5 418 8.02E-124 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_21085 ff5e42ed01f0dff6ffa3bfa63e615b32 422 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 14 417 2.4E-163 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 APT56_21085 ff5e42ed01f0dff6ffa3bfa63e615b32 422 Gene3D G3DSA:3.90.1150.10 13 411 1.1E-152 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_21085 ff5e42ed01f0dff6ffa3bfa63e615b32 422 Pfam PF00202 Aminotransferase class-III 22 415 5.8E-115 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_20880 278b1a8d19309d78df794ab9d1afba93 336 SUPERFAMILY SSF52540 45 308 7.17E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_20880 278b1a8d19309d78df794ab9d1afba93 336 SMART SM00382 45 237 7.8E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_20880 278b1a8d19309d78df794ab9d1afba93 336 Pfam PF00005 ABC transporter 37 187 1.6E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_20880 278b1a8d19309d78df794ab9d1afba93 336 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_20880 278b1a8d19309d78df794ab9d1afba93 336 Gene3D G3DSA:3.40.50.300 25 330 1.1E-94 T 11-10-2018 APT56_20880 278b1a8d19309d78df794ab9d1afba93 336 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 1.1E-29 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_20880 278b1a8d19309d78df794ab9d1afba93 336 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 303 4.5E-20 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_26905 c3a2218e2c3478ce125c5911b139b99b 280 Gene3D G3DSA:3.40.50.300 13 259 6.0E-52 T 11-10-2018 APT56_26905 c3a2218e2c3478ce125c5911b139b99b 280 Pfam PF00005 ABC transporter 34 185 3.2E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_26905 c3a2218e2c3478ce125c5911b139b99b 280 SUPERFAMILY SSF52540 16 257 1.78E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26905 c3a2218e2c3478ce125c5911b139b99b 280 SMART SM00382 43 235 9.3E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11015 1ed2306bd5e8902e4b3201c89f8abd6c 177 SUPERFAMILY SSF52833 40 168 6.16E-35 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_11015 1ed2306bd5e8902e4b3201c89f8abd6c 177 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 169 5.7E-53 T 11-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 APT56_11015 1ed2306bd5e8902e4b3201c89f8abd6c 177 Pfam PF08534 Redoxin 38 160 8.0E-17 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APT56_11015 1ed2306bd5e8902e4b3201c89f8abd6c 177 ProSitePatterns PS00194 Thioredoxin family active site. 65 83 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APT56_11015 1ed2306bd5e8902e4b3201c89f8abd6c 177 Gene3D G3DSA:3.40.30.10 23 176 1.7E-40 T 11-10-2018 APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 SUPERFAMILY SSF52540 320 555 6.46E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 SUPERFAMILY SSF52540 3 253 1.66E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 Pfam PF00005 ABC transporter 332 485 8.7E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 Gene3D G3DSA:3.40.50.300 1 286 6.0E-86 T 11-10-2018 APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 Gene3D G3DSA:3.40.50.300 303 575 5.7E-86 T 11-10-2018 APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 265 2.5E-7 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 536 568 9.7E-5 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 SMART SM00382 340 534 1.4E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 SMART SM00382 32 231 7.9E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 Pfam PF00005 ABC transporter 24 181 5.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_01030 7cefdbd8079cabf9f6918340a9b0e7ff 575 ProSitePatterns PS00211 ABC transporters family signature. 457 471 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_14260 3bc3497efe09c64af67e8fcab5a20a14 237 Pfam PF02308 MgtC family 19 139 4.7E-33 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_14260 3bc3497efe09c64af67e8fcab5a20a14 237 PRINTS PR01837 MgtC/SapB protein signature 41 59 1.1E-39 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_14260 3bc3497efe09c64af67e8fcab5a20a14 237 PRINTS PR01837 MgtC/SapB protein signature 22 41 1.1E-39 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_14260 3bc3497efe09c64af67e8fcab5a20a14 237 PRINTS PR01837 MgtC/SapB protein signature 67 89 1.1E-39 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_14260 3bc3497efe09c64af67e8fcab5a20a14 237 PRINTS PR01837 MgtC/SapB protein signature 94 118 1.1E-39 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_14260 3bc3497efe09c64af67e8fcab5a20a14 237 Gene3D G3DSA:3.30.70.260 150 237 2.1E-5 T 11-10-2018 APT56_04355 41bc7ae5f3a572eda301eb80698b9a3a 274 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 7 253 24.847 T 11-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 APT56_04355 41bc7ae5f3a572eda301eb80698b9a3a 274 Pfam PF08478 POTRA domain, FtsQ-type 53 110 1.0E-13 T 11-10-2018 IPR013685 POTRA domain, FtsQ-type APT56_04355 41bc7ae5f3a572eda301eb80698b9a3a 274 Pfam PF03799 Cell division protein FtsQ 114 245 1.4E-23 T 11-10-2018 IPR005548 Cell division protein FtsQ/DivIB APT56_04355 41bc7ae5f3a572eda301eb80698b9a3a 274 Gene3D G3DSA:3.40.50.11690 111 258 5.1E-39 T 11-10-2018 APT56_04355 41bc7ae5f3a572eda301eb80698b9a3a 274 Gene3D G3DSA:3.10.20.310 40 110 1.4E-16 T 11-10-2018 APT56_10550 f5ad0668c5fbd7e5700c4a11ffd87399 153 Gene3D G3DSA:1.10.10.410 94 153 9.5E-11 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal APT56_10550 f5ad0668c5fbd7e5700c4a11ffd87399 153 SUPERFAMILY SSF89095 5 152 2.82E-35 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 APT56_10550 f5ad0668c5fbd7e5700c4a11ffd87399 153 Gene3D G3DSA:1.10.1510.10 4 93 1.4E-26 T 11-10-2018 APT56_10550 f5ad0668c5fbd7e5700c4a11ffd87399 153 Pfam PF09424 Yqey-like protein 7 152 2.0E-48 T 11-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 APT56_27865 48fe2c97463b912fb73a60f09064009a 156 SUPERFAMILY SSF47973 2 149 2.22E-60 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily APT56_27865 48fe2c97463b912fb73a60f09064009a 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27865 48fe2c97463b912fb73a60f09064009a 156 Gene3D G3DSA:1.10.455.10 2 155 2.1E-59 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily APT56_27865 48fe2c97463b912fb73a60f09064009a 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 7.0E-66 T 11-10-2018 IPR023798 Ribosomal protein S7 domain APT56_27865 48fe2c97463b912fb73a60f09064009a 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 2.1E-66 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 APT56_27865 48fe2c97463b912fb73a60f09064009a 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.399 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 APT56_27865 48fe2c97463b912fb73a60f09064009a 156 PIRSF PIRSF002122 3 156 1.4E-58 T 11-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 APT56_08795 65c95accd9baab3b549cf80bea594f6f 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 4.7E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_08795 65c95accd9baab3b549cf80bea594f6f 223 Gene3D G3DSA:3.40.50.2300 1 122 2.6E-39 T 11-10-2018 APT56_08795 65c95accd9baab3b549cf80bea594f6f 223 Pfam PF00072 Response regulator receiver domain 3 112 4.2E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_08795 65c95accd9baab3b549cf80bea594f6f 223 Gene3D G3DSA:1.10.10.10 123 223 2.2E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08795 65c95accd9baab3b549cf80bea594f6f 223 SUPERFAMILY SSF52172 1 170 8.4E-40 T 11-10-2018 IPR011006 CheY-like superfamily APT56_08795 65c95accd9baab3b549cf80bea594f6f 223 SMART SM00862 145 218 9.4E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_08795 65c95accd9baab3b549cf80bea594f6f 223 SMART SM00448 1 112 2.0E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_26320 8af858784e18f33b80d5beb068b6d805 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 11-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_26320 8af858784e18f33b80d5beb068b6d805 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 2.1E-36 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26320 8af858784e18f33b80d5beb068b6d805 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.9E-39 T 11-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26320 8af858784e18f33b80d5beb068b6d805 103 SUPERFAMILY SSF141091 1 101 1.7E-37 T 11-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26320 8af858784e18f33b80d5beb068b6d805 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.045 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_19920 c9936f949483731a96e4dd416ba40615 469 Pfam PF02397 Bacterial sugar transferase 279 460 1.8E-63 T 11-10-2018 IPR003362 Bacterial sugar transferase APT56_19920 c9936f949483731a96e4dd416ba40615 469 SUPERFAMILY SSF51735 147 233 9.63E-6 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19920 c9936f949483731a96e4dd416ba40615 469 Gene3D G3DSA:3.40.50.720 146 260 5.0E-11 T 11-10-2018 APT56_19920 c9936f949483731a96e4dd416ba40615 469 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 22 469 1.8E-140 T 11-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase APT56_19920 c9936f949483731a96e4dd416ba40615 469 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 22 469 7.4E-156 T 11-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 APT56_19920 c9936f949483731a96e4dd416ba40615 469 Pfam PF13727 CoA-binding domain 67 243 7.8E-38 T 11-10-2018 APT56_00220 a7c7c8127f08e4c7c598afcd899d17a3 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 438 6.9E-98 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_00220 a7c7c8127f08e4c7c598afcd899d17a3 528 Gene3D G3DSA:3.10.105.10 279 506 6.8E-136 T 11-10-2018 APT56_00220 a7c7c8127f08e4c7c598afcd899d17a3 528 Gene3D G3DSA:3.40.190.10 36 278 6.8E-136 T 11-10-2018 APT56_00220 a7c7c8127f08e4c7c598afcd899d17a3 528 PIRSF PIRSF002741 22 526 4.2E-108 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_00220 a7c7c8127f08e4c7c598afcd899d17a3 528 Gene3D G3DSA:3.90.76.10 62 177 6.8E-136 T 11-10-2018 APT56_00220 a7c7c8127f08e4c7c598afcd899d17a3 528 SUPERFAMILY SSF53850 31 510 5.25E-133 T 11-10-2018 APT56_03820 c8fe50c9a38c444aced7ecdebe8aa8a1 667 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 476 666 1.8E-51 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 APT56_03820 c8fe50c9a38c444aced7ecdebe8aa8a1 667 SMART SM01049 67 160 1.3E-6 T 11-10-2018 IPR033480 Single Cache domain 2 APT56_03820 c8fe50c9a38c444aced7ecdebe8aa8a1 667 Gene3D G3DSA:1.20.1480.50 315 419 3.5E-7 T 11-10-2018 APT56_03820 c8fe50c9a38c444aced7ecdebe8aa8a1 667 Gene3D G3DSA:3.30.450.20 67 220 1.1E-20 T 11-10-2018 APT56_03820 c8fe50c9a38c444aced7ecdebe8aa8a1 667 Gene3D G3DSA:3.60.40.10 420 666 3.7E-71 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 APT56_03820 c8fe50c9a38c444aced7ecdebe8aa8a1 667 SMART SM00331 450 666 2.6E-54 T 11-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 APT56_03820 c8fe50c9a38c444aced7ecdebe8aa8a1 667 SUPERFAMILY SSF81606 465 665 9.94E-8 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 APT56_03820 c8fe50c9a38c444aced7ecdebe8aa8a1 667 Pfam PF08269 Cache domain 38 320 2.8E-23 T 11-10-2018 IPR004010 Double Cache domain 2 APT56_13360 1a47c66c49e886395b30ba9e10a35b87 315 Gene3D G3DSA:1.10.3470.10 1 313 9.6E-84 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_13360 1a47c66c49e886395b30ba9e10a35b87 315 SUPERFAMILY SSF81345 2 308 5.23E-70 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_13360 1a47c66c49e886395b30ba9e10a35b87 315 Pfam PF01032 FecCD transport family 2 308 3.3E-81 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APT56_13045 a0f3d40ce352f5e83cc7baffb427ec30 329 PIRSF PIRSF017082 1 328 2.1E-74 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13045 a0f3d40ce352f5e83cc7baffb427ec30 329 Gene3D G3DSA:3.40.190.150 33 319 5.5E-110 T 11-10-2018 APT56_13045 a0f3d40ce352f5e83cc7baffb427ec30 329 SUPERFAMILY SSF53850 106 292 4.03E-14 T 11-10-2018 APT56_13045 a0f3d40ce352f5e83cc7baffb427ec30 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 325 8.8E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13045 a0f3d40ce352f5e83cc7baffb427ec30 329 Gene3D G3DSA:3.40.190.10 130 253 5.5E-110 T 11-10-2018 APT56_05760 ef0c7d5dcabac9ec519ab908ec66516e 290 SUPERFAMILY SSF53697 99 280 5.37E-35 T 11-10-2018 APT56_05760 ef0c7d5dcabac9ec519ab908ec66516e 290 SUPERFAMILY SSF46689 5 77 2.69E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_05760 ef0c7d5dcabac9ec519ab908ec66516e 290 Gene3D G3DSA:1.10.10.10 2 79 6.3E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05760 ef0c7d5dcabac9ec519ab908ec66516e 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 77 3.4E-13 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 APT56_05760 ef0c7d5dcabac9ec519ab908ec66516e 290 Pfam PF01380 SIS domain 130 253 2.0E-16 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_05760 ef0c7d5dcabac9ec519ab908ec66516e 290 Gene3D G3DSA:3.40.50.10490 97 277 6.7E-36 T 11-10-2018 APT56_25955 1b222721bb8bee3184af7a1b1957fc26 229 SUPERFAMILY SSF100950 2 220 7.18E-78 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_25955 1b222721bb8bee3184af7a1b1957fc26 229 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 220 2.1E-114 T 11-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 APT56_25955 1b222721bb8bee3184af7a1b1957fc26 229 SMART SM00882 6 219 8.9E-84 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_25955 1b222721bb8bee3184af7a1b1957fc26 229 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 11-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 APT56_25955 1b222721bb8bee3184af7a1b1957fc26 229 Gene3D G3DSA:3.40.1080.10 1 218 6.1E-80 T 11-10-2018 APT56_25955 1b222721bb8bee3184af7a1b1957fc26 229 Pfam PF01144 Coenzyme A transferase 7 218 2.4E-70 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_06015 8fb85997bbee49f594a1d8d2770a32fe 325 Pfam PF00107 Zinc-binding dehydrogenase 151 275 8.2E-31 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_06015 8fb85997bbee49f594a1d8d2770a32fe 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 3.0E-5 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_06015 8fb85997bbee49f594a1d8d2770a32fe 325 Gene3D G3DSA:3.90.180.10 13 323 2.0E-104 T 11-10-2018 APT56_06015 8fb85997bbee49f594a1d8d2770a32fe 325 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 1 325 9.8E-145 T 11-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 APT56_06015 8fb85997bbee49f594a1d8d2770a32fe 325 SUPERFAMILY SSF51735 111 287 3.83E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_06015 8fb85997bbee49f594a1d8d2770a32fe 325 SMART SM00829 10 323 2.4E-50 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_06015 8fb85997bbee49f594a1d8d2770a32fe 325 Gene3D G3DSA:3.40.50.720 120 262 2.0E-104 T 11-10-2018 APT56_06015 8fb85997bbee49f594a1d8d2770a32fe 325 SUPERFAMILY SSF50129 1 137 7.0E-36 T 11-10-2018 IPR011032 GroES-like superfamily APT56_15545 3eea58661385371bf17a8971b460758d 210 TIGRFAM TIGR04508 queE_Cx14CxxC: 7-carboxy-7-deazaguanine synthase 3 210 2.4E-107 T 11-10-2018 IPR030977 7-carboxy-7-deazaguanine synthase, Cx14CxxC-type GO:0008616|GO:0046872 KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 APT56_15545 3eea58661385371bf17a8971b460758d 210 SUPERFAMILY SSF102114 45 137 1.31E-8 T 11-10-2018 APT56_15545 3eea58661385371bf17a8971b460758d 210 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 210 32.16 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 APT56_15545 3eea58661385371bf17a8971b460758d 210 Pfam PF04055 Radical SAM superfamily 45 122 2.7E-7 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_15545 3eea58661385371bf17a8971b460758d 210 PIRSF PIRSF000370 1 210 2.0E-35 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 APT56_15545 3eea58661385371bf17a8971b460758d 210 Gene3D G3DSA:3.20.20.70 2 210 4.9E-70 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_15545 3eea58661385371bf17a8971b460758d 210 Pfam PF13394 4Fe-4S single cluster domain 25 122 1.1E-5 T 11-10-2018 APT56_16520 91083f0332ec2c52db2d8b944a4f0d09 583 Gene3D G3DSA:3.40.1350.10 495 580 8.8E-7 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 APT56_16520 91083f0332ec2c52db2d8b944a4f0d09 583 Pfam PF08774 VRR-NUC domain 467 578 1.5E-27 T 11-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 APT56_16520 91083f0332ec2c52db2d8b944a4f0d09 583 SMART SM00990 464 578 4.1E-40 T 11-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 APT56_03240 bdb45b641d9ea8a4105a0be8dc4337ce 285 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 200 275 1.2E-13 T 11-10-2018 IPR006260 TonB/TolA, C-terminal APT56_03240 bdb45b641d9ea8a4105a0be8dc4337ce 285 Gene3D G3DSA:3.30.1150.10 117 276 1.6E-19 T 11-10-2018 APT56_03240 bdb45b641d9ea8a4105a0be8dc4337ce 285 SUPERFAMILY SSF74653 166 275 1.01E-17 T 11-10-2018 APT56_03240 bdb45b641d9ea8a4105a0be8dc4337ce 285 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 199 275 9.3E-13 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 Pfam PF00355 Rieske [2Fe-2S] domain 58 140 6.7E-16 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 SUPERFAMILY SSF50022 23 163 3.67E-40 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 SUPERFAMILY SSF55961 172 378 5.26E-30 T 11-10-2018 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 Gene3D G3DSA:3.90.380.10 247 377 8.6E-7 T 11-10-2018 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 190 379 2.2E-27 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 Gene3D G3DSA:3.90.380.10 32 227 5.0E-44 T 11-10-2018 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 111 131 4.7E-13 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 90 110 4.7E-13 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 39 64 4.7E-13 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 69 84 4.7E-13 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_19000 3435a80b8c6944252e86bd220fd4899f 381 Gene3D G3DSA:2.102.10.10 52 173 5.0E-44 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_24815 fb89020247a5a8d2cd3effc01f54d4cc 282 Gene3D G3DSA:3.10.180.10 2 126 6.8E-24 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_24815 fb89020247a5a8d2cd3effc01f54d4cc 282 SUPERFAMILY SSF55729 141 269 2.57E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_24815 fb89020247a5a8d2cd3effc01f54d4cc 282 SUPERFAMILY SSF54593 5 125 9.53E-25 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_24815 fb89020247a5a8d2cd3effc01f54d4cc 282 Gene3D G3DSA:3.40.630.30 137 277 1.6E-20 T 11-10-2018 APT56_24815 fb89020247a5a8d2cd3effc01f54d4cc 282 Pfam PF13673 Acetyltransferase (GNAT) domain 175 267 4.0E-9 T 11-10-2018 IPR000182 GNAT domain APT56_24815 fb89020247a5a8d2cd3effc01f54d4cc 282 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 120 1.0E-8 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 Gene3D G3DSA:3.40.50.1820 3 325 2.5E-90 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 PRINTS PR00412 Epoxide hydrolase signature 299 321 3.1E-29 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 PRINTS PR00412 Epoxide hydrolase signature 261 277 3.1E-29 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 PRINTS PR00412 Epoxide hydrolase signature 51 66 3.1E-29 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 PRINTS PR00412 Epoxide hydrolase signature 97 110 3.1E-29 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 PRINTS PR00412 Epoxide hydrolase signature 111 124 3.1E-29 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 PRINTS PR00412 Epoxide hydrolase signature 31 49 3.1E-29 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 SUPERFAMILY SSF53474 4 323 7.84E-66 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_16630 020d1ebdca8c8a7e20f52f9bf7ed56de 328 Pfam PF00561 alpha/beta hydrolase fold 25 162 4.0E-22 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_02235 01d28c1b43f005cbea470ea16ae3079c 326 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 118 158 7.7E-16 T 11-10-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 APT56_02235 01d28c1b43f005cbea470ea16ae3079c 326 TIGRFAM TIGR03535 DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 8 324 2.3E-143 T 11-10-2018 IPR019875 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, actinobacteria KEGG: 00300+2.3.1.117 APT56_02235 01d28c1b43f005cbea470ea16ae3079c 326 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 240 272 1.6E-15 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_02235 01d28c1b43f005cbea470ea16ae3079c 326 Gene3D G3DSA:2.160.10.10 159 325 1.7E-66 T 11-10-2018 APT56_02235 01d28c1b43f005cbea470ea16ae3079c 326 Gene3D G3DSA:3.30.60.70 118 158 5.1E-19 T 11-10-2018 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily KEGG: 00300+2.3.1.117 APT56_02235 01d28c1b43f005cbea470ea16ae3079c 326 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 6 323 42.167 T 11-10-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 APT56_02235 01d28c1b43f005cbea470ea16ae3079c 326 Gene3D G3DSA:3.30.70.2010 1 117 7.9E-41 T 11-10-2018 APT56_02235 01d28c1b43f005cbea470ea16ae3079c 326 SUPERFAMILY SSF51161 79 305 4.84E-38 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_15500 d36f6e1e9d0d471e600dfc4dced8e01a 162 SUPERFAMILY SSF55826 3 157 6.41E-35 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APT56_15500 d36f6e1e9d0d471e600dfc4dced8e01a 162 Gene3D G3DSA:3.90.960.10 2 155 8.8E-40 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APT56_15500 d36f6e1e9d0d471e600dfc4dced8e01a 162 Pfam PF04073 Aminoacyl-tRNA editing domain 23 148 5.0E-25 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT56_27535 7d5d26933bc379a94a7d958d655f687a 101 Pfam PF13663 Domain of unknown function (DUF4148) 62 97 1.2E-9 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_27535 7d5d26933bc379a94a7d958d655f687a 101 Pfam PF13663 Domain of unknown function (DUF4148) 1 60 8.1E-14 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 2.4E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 2.4E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 2.4E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 6.5E-46 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 5.6E-36 T 11-10-2018 IPR027486 Ribosomal protein S10 domain APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 SMART SM01403 7 101 1.8E-56 T 11-10-2018 IPR027486 Ribosomal protein S10 domain APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.66 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 SUPERFAMILY SSF54999 5 101 5.49E-38 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 Gene3D G3DSA:3.30.70.600 1 103 2.1E-37 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily APT56_27850 21d2822f5ea1628a34d6d8705668527e 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 11-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_00470 b6fc1b6ab58c403d8aa92966d67101d2 288 SUPERFAMILY SSF161098 7 278 1.7E-55 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00470 b6fc1b6ab58c403d8aa92966d67101d2 288 Gene3D G3DSA:1.10.3720.10 8 280 1.6E-57 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00470 b6fc1b6ab58c403d8aa92966d67101d2 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 16 278 3.8E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 Gene3D G3DSA:2.40.50.1030 6 85 1.1E-27 T 11-10-2018 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 73 8.0E-15 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 11-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.164 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 Pfam PF01016 Ribosomal L27 protein 2 81 3.2E-36 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 7.9E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.7E-36 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.7E-36 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.7E-36 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26325 a5929c2dfcf3f5f00a72287b85dae3de 86 SUPERFAMILY SSF110324 2 81 1.6E-32 T 11-10-2018 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 Pfam PF01479 S4 domain 11 57 8.6E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 Gene3D G3DSA:3.30.2350.10 79 301 2.0E-75 T 11-10-2018 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 SMART SM00363 11 78 3.3E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 Pfam PF00849 RNA pseudouridylate synthase 87 235 5.2E-31 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 7 298 7.9E-78 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 125 139 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 SUPERFAMILY SSF55174 10 61 6.92E-9 T 11-10-2018 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 Gene3D G3DSA:3.10.290.10 1 62 3.3E-14 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_06730 7d410a7a4366d0a4324b281e9c71e878 301 SUPERFAMILY SSF55120 72 298 2.4E-65 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_24280 cbca5b8ea876f8763a816177370aee0f 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_24280 cbca5b8ea876f8763a816177370aee0f 485 Pfam PF00171 Aldehyde dehydrogenase family 19 481 2.6E-159 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_24280 cbca5b8ea876f8763a816177370aee0f 485 TIGRFAM TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase 6 485 2.1E-251 T 11-10-2018 IPR017628 2-hydroxymuconic semialdehyde dehydrogenase GO:0016620|GO:0055114 APT56_24280 cbca5b8ea876f8763a816177370aee0f 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_24280 cbca5b8ea876f8763a816177370aee0f 485 Gene3D G3DSA:3.40.605.10 19 472 8.5E-181 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_24280 cbca5b8ea876f8763a816177370aee0f 485 Gene3D G3DSA:3.40.309.10 256 450 8.5E-181 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_24280 cbca5b8ea876f8763a816177370aee0f 485 SUPERFAMILY SSF53720 3 484 3.01E-160 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_07180 aa789252335a86de09c3ca614f803f18 86 SUPERFAMILY SSF109910 3 80 1.57E-18 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily APT56_07180 aa789252335a86de09c3ca614f803f18 86 Gene3D G3DSA:1.10.150.250 1 82 7.3E-19 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily APT56_07180 aa789252335a86de09c3ca614f803f18 86 Pfam PF03937 Flavinator of succinate dehydrogenase 9 68 6.1E-19 T 11-10-2018 IPR005631 Flavinator of succinate dehydrogenase APT56_19875 d0e75b6261a54f32ac194e0b8065369e 489 Gene3D G3DSA:3.40.309.10 266 455 1.7E-185 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_19875 d0e75b6261a54f32ac194e0b8065369e 489 SUPERFAMILY SSF53720 12 486 9.56E-173 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_19875 d0e75b6261a54f32ac194e0b8065369e 489 Gene3D G3DSA:3.40.605.10 24 478 1.7E-185 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_19875 d0e75b6261a54f32ac194e0b8065369e 489 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 35 481 1.6E-221 T 11-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 APT56_19875 d0e75b6261a54f32ac194e0b8065369e 489 Pfam PF00171 Aldehyde dehydrogenase family 24 482 9.9E-173 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_19875 d0e75b6261a54f32ac194e0b8065369e 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 287 298 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_19875 d0e75b6261a54f32ac194e0b8065369e 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 259 266 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_16790 3b327a0b1ac634ed32493acead2c081e 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 324 3.9E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_16790 3b327a0b1ac634ed32493acead2c081e 328 Gene3D G3DSA:3.40.190.150 31 318 4.0E-109 T 11-10-2018 APT56_16790 3b327a0b1ac634ed32493acead2c081e 328 SUPERFAMILY SSF53850 117 290 1.81E-11 T 11-10-2018 APT56_16790 3b327a0b1ac634ed32493acead2c081e 328 Gene3D G3DSA:3.40.190.10 129 253 4.0E-109 T 11-10-2018 APT56_16790 3b327a0b1ac634ed32493acead2c081e 328 PIRSF PIRSF017082 1 328 6.2E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_16880 b191d6ecb99c9fcd499cf8f6155c3a33 256 Pfam PF00753 Metallo-beta-lactamase superfamily 24 208 2.2E-21 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_16880 b191d6ecb99c9fcd499cf8f6155c3a33 256 SUPERFAMILY SSF56281 21 213 1.44E-38 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_16880 b191d6ecb99c9fcd499cf8f6155c3a33 256 SMART SM00849 23 208 4.0E-19 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_16880 b191d6ecb99c9fcd499cf8f6155c3a33 256 Gene3D G3DSA:3.60.15.10 1 217 3.5E-45 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_17950 4e55535fd70a061ee3c28737f8e0f5dc 436 SUPERFAMILY SSF46626 87 208 3.66E-35 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_17950 4e55535fd70a061ee3c28737f8e0f5dc 436 Gene3D G3DSA:1.10.760.10 262 436 7.3E-41 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_17950 4e55535fd70a061ee3c28737f8e0f5dc 436 Gene3D G3DSA:1.10.760.10 95 224 3.6E-36 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_17950 4e55535fd70a061ee3c28737f8e0f5dc 436 SUPERFAMILY SSF46626 274 436 2.71E-32 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_17950 4e55535fd70a061ee3c28737f8e0f5dc 436 Pfam PF03150 Di-haem cytochrome c peroxidase 94 297 4.0E-40 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 APT56_23120 1f8cf8ca7ec11051d73902ddf76f1346 142 SUPERFAMILY SSF52833 3 138 4.08E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_23120 1f8cf8ca7ec11051d73902ddf76f1346 142 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 5.1E-45 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 APT56_23120 1f8cf8ca7ec11051d73902ddf76f1346 142 Pfam PF03960 ArsC family 7 114 7.8E-15 T 11-10-2018 IPR006660 Arsenate reductase-like APT56_23120 1f8cf8ca7ec11051d73902ddf76f1346 142 Gene3D G3DSA:3.40.30.10 1 141 4.0E-58 T 11-10-2018 APT56_15475 932861be93df3b48972b1c5cf27bf5f2 323 Pfam PF13437 HlyD family secretion protein 204 315 7.4E-16 T 11-10-2018 APT56_15475 932861be93df3b48972b1c5cf27bf5f2 323 Gene3D G3DSA:2.40.30.170 217 323 2.0E-10 T 11-10-2018 APT56_15475 932861be93df3b48972b1c5cf27bf5f2 323 Gene3D G3DSA:1.10.287.470 105 172 1.7E-5 T 11-10-2018 APT56_15475 932861be93df3b48972b1c5cf27bf5f2 323 Gene3D G3DSA:1.10.287.470 75 97 2.6E-5 T 11-10-2018 APT56_15475 932861be93df3b48972b1c5cf27bf5f2 323 SUPERFAMILY SSF111369 145 269 9.81E-7 T 11-10-2018 APT56_15475 932861be93df3b48972b1c5cf27bf5f2 323 Gene3D G3DSA:2.40.50.100 44 74 2.6E-5 T 11-10-2018 APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 Gene3D G3DSA:1.10.10.10 1 92 5.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 Gene3D G3DSA:3.40.190.290 93 292 5.3E-22 T 11-10-2018 APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 SUPERFAMILY SSF46785 1 85 1.49E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 Pfam PF03466 LysR substrate binding domain 88 288 4.4E-23 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.1E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16815 3464b5951fdd92c30793bf59663a12ff 322 SUPERFAMILY SSF53850 88 287 2.33E-25 T 11-10-2018 APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 Pfam PF00005 ABC transporter 18 182 1.5E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 Pfam PF12848 ABC transporter 221 303 1.1E-24 T 11-10-2018 IPR032781 ABC-transporter extension domain APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 Gene3D G3DSA:3.40.50.300 4 281 6.5E-55 T 11-10-2018 APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 Gene3D G3DSA:3.40.50.300 282 543 5.9E-50 T 11-10-2018 APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 Pfam PF00005 ABC transporter 343 473 3.7E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 ProSitePatterns PS00211 ABC transporters family signature. 445 459 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 SUPERFAMILY SSF52540 2 255 8.32E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 SMART SM00382 351 518 8.3E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 SMART SM00382 26 228 3.0E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14445 0a6e546f3218e99a3ba2fe0e017c2573 544 SUPERFAMILY SSF52540 303 525 6.63E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19360 350d0565b3372763a882e61c9674e2b9 337 Pfam PF13478 XdhC Rossmann domain 169 311 3.9E-33 T 11-10-2018 IPR027051 XdhC Rossmann domain APT56_19360 350d0565b3372763a882e61c9674e2b9 337 Gene3D G3DSA:3.40.50.720 168 317 2.8E-40 T 11-10-2018 APT56_19360 350d0565b3372763a882e61c9674e2b9 337 Pfam PF02625 XdhC and CoxI family 15 87 1.7E-22 T 11-10-2018 IPR003777 XdhC- CoxI APT56_07500 efeb82b825ace766a3c0177828eeae62 386 Gene3D G3DSA:3.40.50.2000 2 364 2.4E-140 T 11-10-2018 APT56_07500 efeb82b825ace766a3c0177828eeae62 386 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 367 1.4E-141 T 11-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 APT56_07500 efeb82b825ace766a3c0177828eeae62 386 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 367 7.7E-118 T 11-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 APT56_07500 efeb82b825ace766a3c0177828eeae62 386 SUPERFAMILY SSF53756 1 369 8.37E-129 T 11-10-2018 APT56_07500 efeb82b825ace766a3c0177828eeae62 386 Gene3D G3DSA:3.40.50.2000 186 354 2.4E-140 T 11-10-2018 APT56_12615 624ae95a8b03b506a2ab4c6b30b4ecc9 309 Gene3D G3DSA:3.40.718.10 10 302 1.9E-95 T 11-10-2018 APT56_12615 624ae95a8b03b506a2ab4c6b30b4ecc9 309 SUPERFAMILY SSF53659 10 301 4.52E-65 T 11-10-2018 APT56_12615 624ae95a8b03b506a2ab4c6b30b4ecc9 309 Pfam PF01515 Phosphate acetyl/butaryl transferase 85 298 2.0E-48 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APT56_12615 624ae95a8b03b506a2ab4c6b30b4ecc9 309 PIRSF PIRSF000428 2 304 9.8E-84 T 11-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:3.90.1800.10 1280 1362 6.8E-11 T 11-10-2018 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1366 0.0 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:3.90.1110.10 321 447 2.5E-32 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Pfam PF04561 RNA polymerase Rpb2, domain 2 155 227 3.0E-5 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Pfam PF04561 RNA polymerase Rpb2, domain 2 354 460 2.2E-16 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Pfam PF00562 RNA polymerase Rpb2, domain 6 725 1292 4.3E-158 T 11-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Pfam PF10385 RNA polymerase beta subunit external 1 domain 597 662 6.8E-25 T 11-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 SUPERFAMILY SSF64484 12 1368 0.0 T 11-10-2018 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:2.40.50.100 720 794 1.7E-28 T 11-10-2018 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:2.40.50.150 839 956 9.4E-42 T 11-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Pfam PF04560 RNA polymerase Rpb2, domain 7 1294 1368 7.5E-26 T 11-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Pfam PF04565 RNA polymerase Rpb2, domain 3 519 586 1.2E-31 T 11-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:3.90.1100.10 448 634 2.4E-71 T 11-10-2018 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Pfam PF04563 RNA polymerase beta subunit 27 506 7.8E-36 T 11-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1082 1094 - T 11-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:2.40.270.10 1054 1270 1.1E-81 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:2.40.270.10 796 838 1.2E-6 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:3.90.1100.10 18 174 5.1E-51 T 11-10-2018 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Gene3D G3DSA:3.90.1100.10 648 719 1.9E-21 T 11-10-2018 APT56_00010 7a1b6f31154e0996061ecc4fea230d33 1370 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1370 12.209 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_26875 506fc5939732fd220b355924312d251c 235 Gene3D G3DSA:1.10.10.10 155 224 5.5E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26875 506fc5939732fd220b355924312d251c 235 Gene3D G3DSA:2.60.120.10 5 154 3.3E-18 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_26875 506fc5939732fd220b355924312d251c 235 SMART SM00100 13 134 3.0E-4 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_26875 506fc5939732fd220b355924312d251c 235 Pfam PF13545 Crp-like helix-turn-helix domain 151 222 1.0E-10 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_26875 506fc5939732fd220b355924312d251c 235 SUPERFAMILY SSF46785 149 224 2.53E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26875 506fc5939732fd220b355924312d251c 235 SUPERFAMILY SSF51206 12 140 8.77E-23 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APT56_26875 506fc5939732fd220b355924312d251c 235 Pfam PF00027 Cyclic nucleotide-binding domain 32 118 6.4E-12 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_05045 adfc9702789dc973c634166d06dfb61a 214 Pfam PF01081 KDPG and KHG aldolase 13 201 2.5E-39 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APT56_05045 adfc9702789dc973c634166d06dfb61a 214 SUPERFAMILY SSF51569 9 208 3.48E-53 T 11-10-2018 APT56_05045 adfc9702789dc973c634166d06dfb61a 214 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 13 206 1.6E-49 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APT56_05045 adfc9702789dc973c634166d06dfb61a 214 Gene3D G3DSA:3.20.20.70 5 214 4.3E-61 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 SUPERFAMILY SSF56719 30 523 2.75E-178 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 SMART SM00434 11 506 4.1E-290 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 10 852 0.0 T 11-10-2018 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Gene3D G3DSA:3.30.1360.40 236 333 4.8E-223 T 11-10-2018 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 513 1.4E-155 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 656 699 3.0E-10 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 549 594 1.8E-9 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 599 648 1.4E-9 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 704 749 3.4E-13 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 805 851 1.4E-11 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 755 801 2.1E-12 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 2 853 24.044 T 11-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Gene3D G3DSA:1.10.268.10 370 500 4.8E-223 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Gene3D G3DSA:3.90.199.10 33 522 4.8E-223 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 APT56_07535 66f540b726b6e665c7f5581e6a284441 885 Gene3D G3DSA:2.120.10.90 542 852 4.2E-124 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APT56_07535 66f540b726b6e665c7f5581e6a284441 885 SUPERFAMILY SSF101904 544 864 2.09E-111 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APT56_07915 35f8d762bfc1caad940bb5534416c120 133 Pfam PF02033 Ribosome-binding factor A 12 112 1.1E-23 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 APT56_07915 35f8d762bfc1caad940bb5534416c120 133 Gene3D G3DSA:3.30.300.20 9 107 1.1E-24 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_07915 35f8d762bfc1caad940bb5534416c120 133 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 12 115 5.1E-20 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 APT56_07915 35f8d762bfc1caad940bb5534416c120 133 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 15 100 3.0E-41 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 APT56_07915 35f8d762bfc1caad940bb5534416c120 133 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 11 113 21.143 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 APT56_07915 35f8d762bfc1caad940bb5534416c120 133 SUPERFAMILY SSF89919 12 116 3.53E-25 T 11-10-2018 IPR023799 Ribosome-binding factor A domain superfamily APT56_15585 f134cc658ade46d970675b36a1ffc540 577 SUPERFAMILY SSF52467 158 367 5.93E-41 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_15585 f134cc658ade46d970675b36a1ffc540 577 SUPERFAMILY SSF52518 377 558 1.14E-49 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_15585 f134cc658ade46d970675b36a1ffc540 577 Gene3D G3DSA:3.40.50.970 374 570 4.2E-52 T 11-10-2018 APT56_15585 f134cc658ade46d970675b36a1ffc540 577 SUPERFAMILY SSF52518 4 181 5.89E-46 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_15585 f134cc658ade46d970675b36a1ffc540 577 Gene3D G3DSA:3.40.50.970 2 185 5.4E-51 T 11-10-2018 APT56_15585 f134cc658ade46d970675b36a1ffc540 577 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 170 2.0E-44 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_15585 f134cc658ade46d970675b36a1ffc540 577 Gene3D G3DSA:3.40.50.1220 193 373 8.7E-44 T 11-10-2018 APT56_15585 f134cc658ade46d970675b36a1ffc540 577 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 438 457 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APT56_15585 f134cc658ade46d970675b36a1ffc540 577 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 201 334 2.2E-31 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT56_15585 f134cc658ade46d970675b36a1ffc540 577 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 402 550 3.4E-34 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_02205 510529198bbe4bd499702ef301c113ed 687 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 270 1.8E-65 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 APT56_02205 510529198bbe4bd499702ef301c113ed 687 SUPERFAMILY SSF52540 5 656 1.06E-149 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02205 510529198bbe4bd499702ef301c113ed 687 Gene3D G3DSA:3.40.50.300 279 655 1.9E-104 T 11-10-2018 APT56_02205 510529198bbe4bd499702ef301c113ed 687 Gene3D G3DSA:1.10.486.10 382 555 1.9E-104 T 11-10-2018 APT56_02205 510529198bbe4bd499702ef301c113ed 687 Gene3D G3DSA:3.40.50.300 11 272 2.9E-87 T 11-10-2018 APT56_02205 510529198bbe4bd499702ef301c113ed 687 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 9 686 37.403 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 APT56_02205 510529198bbe4bd499702ef301c113ed 687 Gene3D G3DSA:1.10.10.160 113 188 2.9E-87 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily APT56_02205 510529198bbe4bd499702ef301c113ed 687 Pfam PF13361 UvrD-like helicase C-terminal domain 276 636 9.7E-61 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 Gene3D G3DSA:3.40.50.12740 12 187 8.4E-42 T 11-10-2018 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 ProSitePatterns PS00622 LuxR-type HTH domain signature. 255 282 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 Pfam PF00196 Bacterial regulatory proteins, luxR family 241 295 6.8E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 Pfam PF00072 Response regulator receiver domain 14 125 3.2E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 SUPERFAMILY SSF46894 230 299 2.28E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 241 255 9.4E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 271 283 9.4E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 255 271 9.4E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 SMART SM00421 238 295 2.9E-23 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 Gene3D G3DSA:1.10.10.10 240 299 1.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 SUPERFAMILY SSF52172 5 137 5.98E-38 T 11-10-2018 IPR011006 CheY-like superfamily APT56_25005 51928623d4a3efb980570ab55a3a93c0 302 SMART SM00448 12 125 6.7E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_26530 db12fe3853dc839fed00ad1e1ede844d 302 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 233 242 - T 11-10-2018 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|Reactome: R-HSA-77111|Reactome: R-HSA-9033241 APT56_26530 db12fe3853dc839fed00ad1e1ede844d 302 SUPERFAMILY SSF51569 2 288 7.62E-74 T 11-10-2018 APT56_26530 db12fe3853dc839fed00ad1e1ede844d 302 Pfam PF00682 HMGL-like 6 278 4.8E-55 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT56_26530 db12fe3853dc839fed00ad1e1ede844d 302 Gene3D G3DSA:3.20.20.70 1 300 1.6E-133 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_01785 5022aa33b162a821901b2144ab7fbda1 486 Gene3D G3DSA:3.40.309.10 256 453 3.5E-164 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_01785 5022aa33b162a821901b2144ab7fbda1 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_01785 5022aa33b162a821901b2144ab7fbda1 486 SUPERFAMILY SSF53720 8 484 2.62E-156 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_01785 5022aa33b162a821901b2144ab7fbda1 486 Gene3D G3DSA:3.40.605.10 23 481 3.5E-164 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_01785 5022aa33b162a821901b2144ab7fbda1 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_01785 5022aa33b162a821901b2144ab7fbda1 486 Pfam PF00171 Aldehyde dehydrogenase family 17 482 4.5E-165 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_15885 eeca385c4fbb7204df3feb982cd17549 328 Gene3D G3DSA:3.40.190.150 35 316 8.4E-90 T 11-10-2018 APT56_15885 eeca385c4fbb7204df3feb982cd17549 328 Gene3D G3DSA:3.40.190.10 130 253 8.4E-90 T 11-10-2018 APT56_15885 eeca385c4fbb7204df3feb982cd17549 328 SUPERFAMILY SSF53850 104 289 1.81E-10 T 11-10-2018 APT56_15885 eeca385c4fbb7204df3feb982cd17549 328 PIRSF PIRSF017082 1 327 2.1E-65 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_15885 eeca385c4fbb7204df3feb982cd17549 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 322 1.2E-65 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04815 29e6136ba96b9220779218d13c8333f3 298 SUPERFAMILY SSF53613 4 289 4.05E-49 T 11-10-2018 IPR029056 Ribokinase-like APT56_04815 29e6136ba96b9220779218d13c8333f3 298 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 233 246 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APT56_04815 29e6136ba96b9220779218d13c8333f3 298 PRINTS PR00990 Ribokinase signature 200 211 2.5E-5 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APT56_04815 29e6136ba96b9220779218d13c8333f3 298 PRINTS PR00990 Ribokinase signature 33 52 2.5E-5 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APT56_04815 29e6136ba96b9220779218d13c8333f3 298 PRINTS PR00990 Ribokinase signature 6 27 2.5E-5 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APT56_04815 29e6136ba96b9220779218d13c8333f3 298 Pfam PF00294 pfkB family carbohydrate kinase 5 281 1.0E-22 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APT56_04815 29e6136ba96b9220779218d13c8333f3 298 Gene3D G3DSA:3.40.1190.20 3 296 1.7E-49 T 11-10-2018 IPR029056 Ribokinase-like APT56_09195 65c622406488d4eedda0a5d0ac0560aa 156 SUPERFAMILY SSF75217 2 154 1.47E-46 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APT56_09195 65c622406488d4eedda0a5d0ac0560aa 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 1.9E-47 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 APT56_09195 65c622406488d4eedda0a5d0ac0560aa 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 27.199 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 APT56_09195 65c622406488d4eedda0a5d0ac0560aa 156 PIRSF PIRSF004505 1 155 2.4E-44 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 APT56_09195 65c622406488d4eedda0a5d0ac0560aa 156 Gene3D G3DSA:3.40.1280.10 1 156 2.6E-48 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 SUPERFAMILY SSF81886 628 899 3.79E-81 T 11-10-2018 IPR036266 SecA, Wing/Scaffold superfamily APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Gene3D G3DSA:3.90.1440.10 228 368 6.1E-173 T 11-10-2018 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Pfam PF02810 SEC-C motif 891 909 1.8E-10 T 11-10-2018 IPR004027 SEC-C motif APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 SMART SM00958 227 358 1.1E-72 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 PRINTS PR00906 SecA protein signature 100 114 2.5E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 PRINTS PR00906 SecA protein signature 116 126 2.5E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 PRINTS PR00906 SecA protein signature 413 426 2.5E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 PRINTS PR00906 SecA protein signature 169 189 2.5E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 PRINTS PR00906 SecA protein signature 339 361 2.5E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 PRINTS PR00906 SecA protein signature 62 86 2.5E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 PRINTS PR00906 SecA protein signature 376 393 2.5E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 SMART SM00957 5 402 3.1E-300 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 SUPERFAMILY SSF81767 226 368 3.79E-41 T 11-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Gene3D G3DSA:1.10.3060.10 628 840 2.1E-76 T 11-10-2018 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Pfam PF07516 SecA Wing and Scaffold domain 624 836 1.8E-66 T 11-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 ProSitePatterns PS01312 SecA family signature. 500 515 - T 11-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Pfam PF01043 SecA preprotein cross-linking domain 232 358 1.8E-34 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Gene3D G3DSA:3.40.50.300 417 626 1.9E-88 T 11-10-2018 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Pfam PF07517 SecA DEAD-like domain 5 402 3.2E-129 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Gene3D G3DSA:3.40.50.300 21 415 6.1E-173 T 11-10-2018 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 SUPERFAMILY SSF52540 416 625 2.46E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 839 19.99 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 SUPERFAMILY SSF52540 4 415 3.6E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04385 4ac990bf4e7340b79e269196c922f0ab 911 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 27 825 0.0 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APT56_13295 13935a9816d759aa36d9107bf2d7504d 293 Pfam PF00753 Metallo-beta-lactamase superfamily 42 228 6.5E-17 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_13295 13935a9816d759aa36d9107bf2d7504d 293 Gene3D G3DSA:3.60.15.10 29 263 1.0E-32 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_13295 13935a9816d759aa36d9107bf2d7504d 293 SMART SM00849 43 228 3.1E-27 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_13295 13935a9816d759aa36d9107bf2d7504d 293 SUPERFAMILY SSF56281 30 252 4.9E-43 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_19580 201774aec5ff7b272427a81a08f8b358 227 Gene3D G3DSA:1.10.3720.10 3 216 1.2E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19580 201774aec5ff7b272427a81a08f8b358 227 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 1.2E-27 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_19580 201774aec5ff7b272427a81a08f8b358 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 206 1.4E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_19580 201774aec5ff7b272427a81a08f8b358 227 SUPERFAMILY SSF161098 14 202 4.58E-42 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20465 71bfba7ae4af9d51b76f1e40fe421e3e 397 Gene3D G3DSA:2.60.120.650 1 210 2.1E-75 T 11-10-2018 APT56_20465 71bfba7ae4af9d51b76f1e40fe421e3e 397 SUPERFAMILY SSF51197 6 300 1.07E-62 T 11-10-2018 APT56_20465 71bfba7ae4af9d51b76f1e40fe421e3e 397 Pfam PF08007 Cupin superfamily protein 15 325 1.2E-86 T 11-10-2018 IPR003347 JmjC domain APT56_20465 71bfba7ae4af9d51b76f1e40fe421e3e 397 SMART SM00558 98 225 0.0023 T 11-10-2018 IPR003347 JmjC domain APT56_20465 71bfba7ae4af9d51b76f1e40fe421e3e 397 Gene3D G3DSA:1.10.10.2510 244 395 1.4E-14 T 11-10-2018 APT56_25915 8d96fef517f2fc00a072e97c1e89ffb2 393 Gene3D G3DSA:1.20.1250.20 3 384 1.1E-28 T 11-10-2018 APT56_25915 8d96fef517f2fc00a072e97c1e89ffb2 393 SUPERFAMILY SSF103473 5 389 1.44E-33 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_25915 8d96fef517f2fc00a072e97c1e89ffb2 393 Pfam PF07690 Major Facilitator Superfamily 21 336 1.2E-14 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_04050 08d9da3b80ddc60ca80b2f6359638d91 154 SUPERFAMILY SSF52402 2 148 2.09E-35 T 11-10-2018 APT56_04050 08d9da3b80ddc60ca80b2f6359638d91 154 Gene3D G3DSA:3.40.50.620 1 149 9.5E-37 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_04050 08d9da3b80ddc60ca80b2f6359638d91 154 Pfam PF00582 Universal stress protein family 1 148 1.5E-30 T 11-10-2018 IPR006016 UspA APT56_04050 08d9da3b80ddc60ca80b2f6359638d91 154 PRINTS PR01438 Universal stress protein signature 108 120 4.6E-18 T 11-10-2018 IPR006015 Universal stress protein A APT56_04050 08d9da3b80ddc60ca80b2f6359638d91 154 PRINTS PR01438 Universal stress protein signature 2 20 4.6E-18 T 11-10-2018 IPR006015 Universal stress protein A APT56_04050 08d9da3b80ddc60ca80b2f6359638d91 154 PRINTS PR01438 Universal stress protein signature 126 148 4.6E-18 T 11-10-2018 IPR006015 Universal stress protein A APT56_23110 443794a4f823320e75acb9f2e1c40a67 733 Pfam PF00593 TonB dependent receptor 297 731 9.2E-40 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_23110 443794a4f823320e75acb9f2e1c40a67 733 Gene3D G3DSA:2.170.130.10 49 172 1.3E-26 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_23110 443794a4f823320e75acb9f2e1c40a67 733 Gene3D G3DSA:2.40.170.20 180 733 1.6E-84 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_23110 443794a4f823320e75acb9f2e1c40a67 733 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 166 5.4E-21 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_23110 443794a4f823320e75acb9f2e1c40a67 733 SUPERFAMILY SSF56935 57 733 2.11E-113 T 11-10-2018 APT56_20700 5288e810a89ab33a75163fc014064e09 495 SMART SM00283 222 469 4.1E-63 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_20700 5288e810a89ab33a75163fc014064e09 495 Gene3D G3DSA:1.10.287.950 177 471 1.5E-66 T 11-10-2018 APT56_20700 5288e810a89ab33a75163fc014064e09 495 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 349 378 5.3E-41 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_20700 5288e810a89ab33a75163fc014064e09 495 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 426 5.3E-41 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_20700 5288e810a89ab33a75163fc014064e09 495 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 243 272 5.3E-41 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_20700 5288e810a89ab33a75163fc014064e09 495 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 320 347 5.3E-41 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_20700 5288e810a89ab33a75163fc014064e09 495 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 282 436 8.8E-41 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_20700 5288e810a89ab33a75163fc014064e09 495 SUPERFAMILY SSF58104 205 473 5.49E-56 T 11-10-2018 APT56_26735 244da79824b1d9a189fb69b149dd4158 300 SUPERFAMILY SSF53633 16 299 8.12E-90 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_26735 244da79824b1d9a189fb69b149dd4158 300 PRINTS PR00474 Glutamate 5-kinase family signature 64 78 4.3E-6 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_26735 244da79824b1d9a189fb69b149dd4158 300 PRINTS PR00474 Glutamate 5-kinase family signature 199 226 4.3E-6 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_26735 244da79824b1d9a189fb69b149dd4158 300 PRINTS PR00474 Glutamate 5-kinase family signature 249 269 4.3E-6 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APT56_26735 244da79824b1d9a189fb69b149dd4158 300 TIGRFAM TIGR00761 argB: acetylglutamate kinase 34 274 2.2E-73 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_26735 244da79824b1d9a189fb69b149dd4158 300 Pfam PF00696 Amino acid kinase family 33 276 8.6E-44 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APT56_26735 244da79824b1d9a189fb69b149dd4158 300 Hamap MF_00082 Acetylglutamate kinase [argB]. 32 292 48.882 T 11-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_26735 244da79824b1d9a189fb69b149dd4158 300 Gene3D G3DSA:3.40.1160.10 11 300 6.1E-98 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APT56_26735 244da79824b1d9a189fb69b149dd4158 300 PIRSF PIRSF000728 18 299 1.1E-101 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 Hamap MF_00303 Trigger factor [tig]. 1 423 20.258 T 11-10-2018 IPR005215 Trigger factor GO:0015031 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 TIGRFAM TIGR00115 tig: trigger factor 11 416 4.9E-131 T 11-10-2018 IPR005215 Trigger factor GO:0015031 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 SUPERFAMILY SSF102735 1 130 1.22E-30 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 Gene3D G3DSA:1.10.3120.10 117 422 3.3E-91 T 11-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 Gene3D G3DSA:3.30.70.1050 1 116 1.9E-30 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 265 418 1.8E-32 T 11-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 4.0E-35 T 11-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 SUPERFAMILY SSF109998 250 435 2.16E-44 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 PIRSF PIRSF003095 1 436 1.5E-126 T 11-10-2018 IPR005215 Trigger factor GO:0015031 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 Gene3D G3DSA:3.10.50.40 151 248 3.3E-91 T 11-10-2018 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 SUPERFAMILY SSF54534 97 243 5.24E-31 T 11-10-2018 APT56_17735 44cf5f29607e4ad50cc1864d2cc3c0ee 436 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 239 3.5E-13 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain APT56_00580 a4f13866c2737928752d86069f4c6e4e 171 Gene3D G3DSA:3.40.50.450 1 167 8.9E-56 T 11-10-2018 APT56_00580 a4f13866c2737928752d86069f4c6e4e 171 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 4 143 5.4E-46 T 11-10-2018 IPR007710 Nucleoside 2-deoxyribosyltransferase Reactome: R-HSA-74259 APT56_00580 a4f13866c2737928752d86069f4c6e4e 171 SUPERFAMILY SSF52309 1 164 5.19E-47 T 11-10-2018 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 Gene3D G3DSA:1.10.287.990 20 82 2.4E-26 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 PIRSF PIRSF000349 1 192 2.9E-86 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 2.3E-40 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 SUPERFAMILY SSF54719 85 191 1.96E-43 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 81 1.9E-34 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 SUPERFAMILY SSF46609 1 83 3.14E-36 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 Gene3D G3DSA:2.40.500.20 83 192 1.1E-43 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 1.1E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 1.1E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.1E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.1E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18230 7237f054789523d3f27883d3f8d40c2d 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 1.1E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_05310 bc8f9110b24d7a500c5b29558b2449df 341 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 324 49.593 T 11-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 APT56_05310 bc8f9110b24d7a500c5b29558b2449df 341 Pfam PF01207 Dihydrouridine synthase (Dus) 14 313 1.5E-99 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT56_05310 bc8f9110b24d7a500c5b29558b2449df 341 PIRSF PIRSF006621 1 327 7.5E-101 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT56_05310 bc8f9110b24d7a500c5b29558b2449df 341 SUPERFAMILY SSF51395 10 320 5.49E-87 T 11-10-2018 APT56_05310 bc8f9110b24d7a500c5b29558b2449df 341 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 1.2E-116 T 11-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 APT56_05310 bc8f9110b24d7a500c5b29558b2449df 341 Gene3D G3DSA:3.20.20.70 7 252 5.4E-75 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_05310 bc8f9110b24d7a500c5b29558b2449df 341 Gene3D G3DSA:1.10.1200.80 254 326 5.1E-11 T 11-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 APT56_05310 bc8f9110b24d7a500c5b29558b2449df 341 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 APT56_06680 ae11ad10982f1b3e4543f1092f60e91e 169 Pfam PF03358 NADPH-dependent FMN reductase 44 116 1.2E-7 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 APT56_06680 ae11ad10982f1b3e4543f1092f60e91e 169 Gene3D G3DSA:3.40.50.360 1 168 6.8E-22 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_06680 ae11ad10982f1b3e4543f1092f60e91e 169 SUPERFAMILY SSF52218 1 165 3.52E-30 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_14880 ed9c2a13463d3b016d7fe26a1a28b72b 498 Hamap MF_01932 AMP nucleosidase [amn]. 17 498 61.812 T 11-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 APT56_14880 ed9c2a13463d3b016d7fe26a1a28b72b 498 Gene3D G3DSA:3.30.1730.10 21 185 6.1E-48 T 11-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 APT56_14880 ed9c2a13463d3b016d7fe26a1a28b72b 498 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 26 181 1.6E-53 T 11-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 APT56_14880 ed9c2a13463d3b016d7fe26a1a28b72b 498 Pfam PF01048 Phosphorylase superfamily 276 443 1.7E-13 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APT56_14880 ed9c2a13463d3b016d7fe26a1a28b72b 498 Gene3D G3DSA:3.40.50.1580 187 498 1.1E-101 T 11-10-2018 APT56_14880 ed9c2a13463d3b016d7fe26a1a28b72b 498 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 26 498 1.4E-211 T 11-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 APT56_14880 ed9c2a13463d3b016d7fe26a1a28b72b 498 SUPERFAMILY SSF53167 23 498 1.44E-153 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 APT56_10740 5424c141fdb964b0da5c918537693e31 337 SUPERFAMILY SSF53850 27 288 1.88E-27 T 11-10-2018 APT56_10740 5424c141fdb964b0da5c918537693e31 337 Gene3D G3DSA:3.40.190.10 22 149 1.1E-16 T 11-10-2018 APT56_10740 5424c141fdb964b0da5c918537693e31 337 Pfam PF13379 NMT1-like family 22 264 2.7E-29 T 11-10-2018 APT56_10740 5424c141fdb964b0da5c918537693e31 337 Gene3D G3DSA:3.40.190.10 150 336 7.5E-25 T 11-10-2018 APT56_14185 e694ccad6313385e68fb4584af666fbf 156 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 15 151 2.4E-20 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 APT56_12005 1a1c1f1c9fc9e302b3e5abb13709945b 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 3.4E-108 T 11-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 APT56_12005 1a1c1f1c9fc9e302b3e5abb13709945b 261 Pfam PF00460 Flagella basal body rod protein 5 35 3.8E-11 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 APT56_12005 1a1c1f1c9fc9e302b3e5abb13709945b 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 184 261 4.7E-25 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain APT56_12005 1a1c1f1c9fc9e302b3e5abb13709945b 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 5.2E-43 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G APT56_12005 1a1c1f1c9fc9e302b3e5abb13709945b 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 146 244 3.7E-30 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G APT56_12005 1a1c1f1c9fc9e302b3e5abb13709945b 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site APT56_12005 1a1c1f1c9fc9e302b3e5abb13709945b 261 SUPERFAMILY SSF117143 93 223 4.45E-34 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like APT56_13540 bc9d5d27b3a8f3335a64614f249ce687 118 Pfam PF04234 CopC domain 21 116 1.5E-24 T 11-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 APT56_13540 bc9d5d27b3a8f3335a64614f249ce687 118 SUPERFAMILY SSF81296 20 117 2.45E-26 T 11-10-2018 IPR014756 Immunoglobulin E-set APT56_13540 bc9d5d27b3a8f3335a64614f249ce687 118 Gene3D G3DSA:2.60.40.1220 21 118 3.4E-28 T 11-10-2018 APT56_17090 d0adcd94415f6a7d7f7038e9498897d8 794 SUPERFAMILY SSF56935 122 794 1.06E-128 T 11-10-2018 APT56_17090 d0adcd94415f6a7d7f7038e9498897d8 794 Gene3D G3DSA:2.170.130.10 141 277 4.1E-38 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_17090 d0adcd94415f6a7d7f7038e9498897d8 794 Gene3D G3DSA:2.40.170.20 278 794 1.8E-143 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_17090 d0adcd94415f6a7d7f7038e9498897d8 794 Gene3D G3DSA:3.55.50.30 38 140 3.9E-22 T 11-10-2018 APT56_17090 d0adcd94415f6a7d7f7038e9498897d8 794 SMART SM00965 68 119 3.4E-9 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_17090 d0adcd94415f6a7d7f7038e9498897d8 794 Pfam PF07715 TonB-dependent Receptor Plug Domain 164 267 5.5E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_17090 d0adcd94415f6a7d7f7038e9498897d8 794 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 165 793 5.2E-115 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_17090 d0adcd94415f6a7d7f7038e9498897d8 794 Pfam PF00593 TonB dependent receptor 340 793 4.6E-59 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_03995 f008372129bea6f627ab3a57cc1180ff 239 Gene3D G3DSA:3.40.50.300 7 238 8.1E-53 T 11-10-2018 APT56_03995 f008372129bea6f627ab3a57cc1180ff 239 Pfam PF00005 ABC transporter 26 167 6.3E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_03995 f008372129bea6f627ab3a57cc1180ff 239 SMART SM00382 35 218 4.8E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_03995 f008372129bea6f627ab3a57cc1180ff 239 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_03995 f008372129bea6f627ab3a57cc1180ff 239 SUPERFAMILY SSF52540 9 231 4.72E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11540 d31c587a0fa1bf3119ed96848e8c506e 197 Gene3D G3DSA:3.40.109.10 10 173 3.7E-38 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT56_11540 d31c587a0fa1bf3119ed96848e8c506e 197 SUPERFAMILY SSF55469 11 192 1.03E-38 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT56_11540 d31c587a0fa1bf3119ed96848e8c506e 197 PIRSF PIRSF000232 5 196 2.0E-53 T 11-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like APT56_11540 d31c587a0fa1bf3119ed96848e8c506e 197 Pfam PF00881 Nitroreductase family 13 172 4.1E-29 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 510 2.6E-249 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 SUPERFAMILY SSF52540 96 381 3.44E-95 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 SUPERFAMILY SSF50615 10 94 3.14E-28 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 Gene3D G3DSA:3.40.50.300 94 382 4.8E-131 T 11-10-2018 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 Gene3D G3DSA:1.20.150.20 383 512 2.1E-46 T 11-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 SUPERFAMILY SSF47917 383 510 2.49E-45 T 11-10-2018 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.2E-45 T 11-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.794 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 Gene3D G3DSA:2.40.30.20 1 93 5.4E-34 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 1.9E-74 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 PIRSF PIRSF039088 1 513 2.0E-238 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02170 8793ad5f5e38dbd42ab35b6489414d0c 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 2.3E-16 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_25940 83a119fbed603e64974236102f8cfb3e 446 Pfam PF02667 Short chain fatty acid transporter 2 437 1.8E-128 T 11-10-2018 IPR006160 Short chain fatty acid transporter AtoE APT56_18415 88ea40fbf62cdbcb1909f79648e4f068 276 Pfam PF00494 Squalene/phytoene synthase 5 262 2.3E-64 T 11-10-2018 APT56_18415 88ea40fbf62cdbcb1909f79648e4f068 276 SUPERFAMILY SSF48576 5 275 3.02E-68 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APT56_18415 88ea40fbf62cdbcb1909f79648e4f068 276 Gene3D G3DSA:1.10.600.10 3 256 3.1E-84 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APT56_18415 88ea40fbf62cdbcb1909f79648e4f068 276 TIGRFAM TIGR03464 HpnC: squalene synthase HpnC 2 275 1.0E-113 T 11-10-2018 IPR017827 Hydroxysqualene synthase HpnC MetaCyc: PWY-7072 APT56_13760 b27e01d1160344423fd68368637c79cf 281 Gene3D G3DSA:3.90.550.10 1 279 4.8E-83 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_13760 b27e01d1160344423fd68368637c79cf 281 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 265 1.6E-106 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 APT56_13760 b27e01d1160344423fd68368637c79cf 281 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 246 260 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT56_13760 b27e01d1160344423fd68368637c79cf 281 SUPERFAMILY SSF53448 2 269 1.67E-65 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_13760 b27e01d1160344423fd68368637c79cf 281 Pfam PF00483 Nucleotidyl transferase 12 269 3.6E-25 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT56_07165 9209a08a954d89a861bfb15e7d7183f7 127 SUPERFAMILY SSF81343 11 127 7.52E-24 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07165 9209a08a954d89a861bfb15e7d7183f7 127 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 4 113 2.5E-14 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07165 9209a08a954d89a861bfb15e7d7183f7 127 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 16 125 3.1E-33 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 APT56_07165 9209a08a954d89a861bfb15e7d7183f7 127 PIRSF PIRSF000169 8 127 1.0E-38 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 APT56_07165 9209a08a954d89a861bfb15e7d7183f7 127 Gene3D G3DSA:1.20.1300.10 10 127 6.1E-27 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_11105 005227fc430bcba22c084dcce92f3d1b 331 PIRSF PIRSF017082 1 330 1.5E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_11105 005227fc430bcba22c084dcce92f3d1b 331 SUPERFAMILY SSF53850 95 290 6.38E-14 T 11-10-2018 APT56_11105 005227fc430bcba22c084dcce92f3d1b 331 Gene3D G3DSA:3.40.190.150 34 321 2.2E-113 T 11-10-2018 APT56_11105 005227fc430bcba22c084dcce92f3d1b 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 327 4.7E-88 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_11105 005227fc430bcba22c084dcce92f3d1b 331 Gene3D G3DSA:3.40.190.10 133 256 2.2E-113 T 11-10-2018 APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 SUPERFAMILY SSF52821 264 364 3.01E-23 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 SUPERFAMILY SSF52821 114 242 3.14E-29 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 SUPERFAMILY SSF52821 379 527 1.88E-17 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 Pfam PF00581 Rhodanese-like domain 278 363 5.3E-7 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 Pfam PF00581 Rhodanese-like domain 139 232 2.7E-10 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 Pfam PF00581 Rhodanese-like domain 18 108 2.3E-10 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 SUPERFAMILY SSF52821 11 127 9.17E-24 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 Gene3D G3DSA:3.40.250.10 271 359 3.3E-20 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 Gene3D G3DSA:3.40.250.10 134 241 1.6E-20 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 Gene3D G3DSA:3.40.250.10 10 116 5.3E-20 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 SMART SM00450 380 473 1.3 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 SMART SM00450 275 371 3.5E-7 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 SMART SM00450 14 112 2.9E-11 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 SMART SM00450 138 236 9.0E-9 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_00115 eb786d3fa51af839f55af2f453cb5131 531 Gene3D G3DSA:3.40.250.10 382 477 7.9E-11 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_26805 81759aafcdbc3cf997d22563a8b67da5 229 SUPERFAMILY SSF53271 10 226 2.23E-43 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APT56_26805 81759aafcdbc3cf997d22563a8b67da5 229 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 17 202 7.5E-58 T 11-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_26805 81759aafcdbc3cf997d22563a8b67da5 229 Gene3D G3DSA:3.40.50.2020 8 229 3.5E-69 T 11-10-2018 APT56_26805 81759aafcdbc3cf997d22563a8b67da5 229 Pfam PF00156 Phosphoribosyl transferase domain 45 175 2.9E-15 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT56_26805 81759aafcdbc3cf997d22563a8b67da5 229 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 229 32.757 T 11-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_18510 418a16bb360fd87e6eaba2d553e83519 433 ProSitePatterns PS00217 Sugar transport proteins signature 2. 127 152 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_18510 418a16bb360fd87e6eaba2d553e83519 433 Pfam PF00083 Sugar (and other) transporter 19 220 4.3E-27 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_18510 418a16bb360fd87e6eaba2d553e83519 433 Pfam PF07690 Major Facilitator Superfamily 280 426 3.3E-11 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_18510 418a16bb360fd87e6eaba2d553e83519 433 Gene3D G3DSA:1.20.1250.20 13 432 3.6E-72 T 11-10-2018 APT56_18510 418a16bb360fd87e6eaba2d553e83519 433 SUPERFAMILY SSF103473 8 425 2.62E-70 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 11 297 66.703 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 15 297 2.7E-107 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 81 99 1.1E-35 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 45 66 1.1E-35 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 113 129 1.1E-35 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 138 155 1.1E-35 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 PIRSF PIRSF001365 7 301 1.3E-96 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 SUPERFAMILY SSF51569 11 299 7.54E-104 T 11-10-2018 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 SMART SM01130 11 299 6.9E-141 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 48 65 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 Gene3D G3DSA:3.20.20.70 12 301 3.3E-109 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 143 173 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 APT56_20480 ab0d89d20b21525905ff9bd86e40ef0f 301 Pfam PF00701 Dihydrodipicolinate synthetase family 11 297 4.8E-103 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 Gene3D G3DSA:3.40.50.300 3 221 1.9E-70 T 11-10-2018 APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 Gene3D G3DSA:2.40.50.140 282 339 2.0E-8 T 11-10-2018 APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 SUPERFAMILY SSF52540 4 242 4.28E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 SUPERFAMILY SSF50331 238 342 4.25E-11 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 SMART SM00382 28 211 2.7E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 Gene3D G3DSA:2.40.50.940 222 281 2.0E-8 T 11-10-2018 APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 Pfam PF00005 ABC transporter 20 161 7.0E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00390 61b858a5bb46f234dfcd0885fa71d09d 356 Pfam PF08402 TOBE domain 275 347 1.0E-8 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 Gene3D G3DSA:3.50.50.60 7 316 2.1E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 292 310 1.8E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 1.8E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 1.8E-6 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 Gene3D G3DSA:1.10.10.1100 362 432 3.8E-20 T 11-10-2018 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 Pfam PF04324 BFD-like [2Fe-2S] binding domain 372 424 1.4E-11 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 PIRSF PIRSF037495 2 460 7.7E-142 T 11-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 SUPERFAMILY SSF51905 7 325 1.75E-34 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 Gene3D G3DSA:3.50.50.60 120 258 2.1E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.2E-11 T 11-10-2018 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 2.2E-11 T 11-10-2018 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 2.2E-11 T 11-10-2018 APT56_00410 f29e5513f11ac514e5e64c5ee6fa5d29 461 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 309 1.7E-22 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_11965 47837a7122dd72b82c8192d1d4cff7a3 158 Gene3D G3DSA:1.20.58.300 5 128 2.3E-36 T 11-10-2018 APT56_11965 47837a7122dd72b82c8192d1d4cff7a3 158 Pfam PF05130 FlgN protein 4 144 1.3E-24 T 11-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 APT56_11965 47837a7122dd72b82c8192d1d4cff7a3 158 SUPERFAMILY SSF140566 4 128 3.14E-20 T 11-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 APT56_24400 a97ec2030ead23d4e933460c108fdb62 299 Gene3D G3DSA:1.10.3720.10 62 258 1.2E-28 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24400 a97ec2030ead23d4e933460c108fdb62 299 SUPERFAMILY SSF161098 66 253 6.15E-33 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24400 a97ec2030ead23d4e933460c108fdb62 299 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 20 259 6.8E-82 T 11-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 APT56_24400 a97ec2030ead23d4e933460c108fdb62 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 256 2.7E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_23155 a5228faa0563f940f322df17f6651f5b 276 SUPERFAMILY SSF53807 19 266 8.24E-48 T 11-10-2018 APT56_23155 a5228faa0563f940f322df17f6651f5b 276 Gene3D G3DSA:3.40.50.1980 142 273 6.8E-36 T 11-10-2018 APT56_23155 a5228faa0563f940f322df17f6651f5b 276 Gene3D G3DSA:3.40.50.1980 18 141 8.1E-41 T 11-10-2018 APT56_23155 a5228faa0563f940f322df17f6651f5b 276 Pfam PF01497 Periplasmic binding protein 24 248 1.3E-37 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APT56_12320 15f3aadce46722e1e81800a05737968d 153 Pfam PF11008 Protein of unknown function (DUF2846) 16 124 1.4E-13 T 11-10-2018 IPR022548 Domain of unknown function DUF2846 APT56_06495 788df6b84ff30bcfee7ec7a11d0c7783 172 SUPERFAMILY SSF69118 4 169 2.28E-39 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_06495 788df6b84ff30bcfee7ec7a11d0c7783 172 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 109 157 1.8E-10 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_06495 788df6b84ff30bcfee7ec7a11d0c7783 172 Gene3D G3DSA:1.20.1290.10 3 172 5.8E-52 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_06495 788df6b84ff30bcfee7ec7a11d0c7783 172 Hamap MF_01676 Alkyl hydroperoxide reductase AhpD [ahpD]. 1 172 72.267 T 11-10-2018 IPR004674 Alkylhydroperoxidase AhpD GO:0006979|GO:0032843|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_06495 788df6b84ff30bcfee7ec7a11d0c7783 172 Pfam PF02627 Carboxymuconolactone decarboxylase family 95 169 1.7E-12 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_23365 8f66f06d4600c4036c890cc4e838f76b 119 Pfam PF13663 Domain of unknown function (DUF4148) 79 107 3.7E-8 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_23365 8f66f06d4600c4036c890cc4e838f76b 119 Pfam PF13663 Domain of unknown function (DUF4148) 1 68 2.9E-11 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_02260 8d1136b4d594680ef30b0e64c2c8366b 327 Gene3D G3DSA:3.40.50.300 3 326 9.4E-100 T 11-10-2018 APT56_02260 8d1136b4d594680ef30b0e64c2c8366b 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 299 5.1E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_02260 8d1136b4d594680ef30b0e64c2c8366b 327 SUPERFAMILY SSF52540 34 307 1.45E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02260 8d1136b4d594680ef30b0e64c2c8366b 327 Pfam PF00005 ABC transporter 26 183 4.0E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_02260 8d1136b4d594680ef30b0e64c2c8366b 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 317 1.5E-23 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_02260 8d1136b4d594680ef30b0e64c2c8366b 327 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_02260 8d1136b4d594680ef30b0e64c2c8366b 327 SMART SM00382 34 233 9.6E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 Gene3D G3DSA:3.40.190.10 92 290 1.8E-46 T 11-10-2018 APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 6.8E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 SUPERFAMILY SSF53850 90 296 1.3E-39 T 11-10-2018 APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 SUPERFAMILY SSF46785 2 112 6.45E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.3E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 Pfam PF03466 LysR substrate binding domain 88 294 8.1E-44 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 Gene3D G3DSA:1.10.10.10 2 89 1.3E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01305 1b7f6b83cb0b8c27cbc85f7cf4a471b0 305 Gene3D G3DSA:3.40.190.10 163 268 1.8E-46 T 11-10-2018 APT56_23940 b54d18fef0e9575d784d05bcf1130b3b 90 Gene3D G3DSA:1.20.58.1000 1 90 2.8E-27 T 11-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily APT56_23940 b54d18fef0e9575d784d05bcf1130b3b 90 Pfam PF02583 Metal-sensitive transcriptional repressor 7 86 1.6E-22 T 11-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 APT56_14985 19b29ff06b85e95c2bb740e7f56eee5c 355 SUPERFAMILY SSF56935 22 355 9.97E-70 T 11-10-2018 APT56_14985 19b29ff06b85e95c2bb740e7f56eee5c 355 Pfam PF13609 Gram-negative porin 9 332 3.0E-42 T 11-10-2018 APT56_14985 19b29ff06b85e95c2bb740e7f56eee5c 355 Gene3D G3DSA:2.40.160.10 23 355 5.1E-71 T 11-10-2018 IPR023614 Porin domain superfamily APT56_16420 a37be452c42633428a1c5069d26370db 214 Pfam PF12804 MobA-like NTP transferase domain 7 169 2.7E-22 T 11-10-2018 IPR025877 MobA-like NTP transferase APT56_16420 a37be452c42633428a1c5069d26370db 214 SUPERFAMILY SSF53448 4 195 1.46E-20 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_16420 a37be452c42633428a1c5069d26370db 214 Gene3D G3DSA:3.90.550.10 2 201 7.1E-33 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_11970 1e7d4de01f7e77eb94369ef322f8c58b 97 Pfam PF04316 Anti-sigma-28 factor, FlgM 40 89 2.3E-12 T 11-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal APT56_11970 1e7d4de01f7e77eb94369ef322f8c58b 97 SUPERFAMILY SSF101498 23 91 3.14E-12 T 11-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily APT56_11970 1e7d4de01f7e77eb94369ef322f8c58b 97 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 2 92 2.1E-17 T 11-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 APT56_22985 f18c86cc50cc515afd71b4b257053943 107 Pfam PF03413 Peptidase propeptide and YPEB domain 44 96 5.1E-8 T 11-10-2018 IPR025711 PepSY domain APT56_22985 f18c86cc50cc515afd71b4b257053943 107 Gene3D G3DSA:3.10.450.40 29 99 1.7E-8 T 11-10-2018 APT56_11945 c606b15e989b1dd479a9526d036d1292 505 SUPERFAMILY SSF58104 62 318 3.79E-47 T 11-10-2018 APT56_11945 c606b15e989b1dd479a9526d036d1292 505 Gene3D G3DSA:1.10.287.950 32 333 1.1E-50 T 11-10-2018 APT56_11945 c606b15e989b1dd479a9526d036d1292 505 SMART SM00283 56 324 8.5E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_11945 c606b15e989b1dd479a9526d036d1292 505 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 183 212 3.4E-15 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_11945 c606b15e989b1dd479a9526d036d1292 505 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 154 181 3.4E-15 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_11945 c606b15e989b1dd479a9526d036d1292 505 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 77 106 3.4E-15 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_11945 c606b15e989b1dd479a9526d036d1292 505 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 122 284 6.9E-29 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_03910 ae2df066ac5f5de19e47887a78a662a2 240 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 4 176 1.5E-57 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_03910 ae2df066ac5f5de19e47887a78a662a2 240 SMART SM00479 2 174 1.6E-44 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APT56_03910 ae2df066ac5f5de19e47887a78a662a2 240 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 232 5.0E-87 T 11-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_03910 ae2df066ac5f5de19e47887a78a662a2 240 Pfam PF00929 Exonuclease 4 164 8.2E-33 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APT56_03910 ae2df066ac5f5de19e47887a78a662a2 240 Gene3D G3DSA:3.30.420.10 1 178 1.7E-52 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_03910 ae2df066ac5f5de19e47887a78a662a2 240 SUPERFAMILY SSF53098 1 174 1.65E-52 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_00350 ed3800d267fea165397c09f272eb9b90 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 17 120 2.0E-22 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_00350 ed3800d267fea165397c09f272eb9b90 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 226 1.8E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00350 ed3800d267fea165397c09f272eb9b90 229 SUPERFAMILY SSF161098 17 211 2.62E-39 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00350 ed3800d267fea165397c09f272eb9b90 229 Gene3D G3DSA:1.10.3720.10 3 227 1.5E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13610 eb33ac86c72e6a8db9d2cadde31888fc 338 SUPERFAMILY SSF53850 26 333 2.79E-72 T 11-10-2018 APT56_13610 eb33ac86c72e6a8db9d2cadde31888fc 338 Pfam PF13531 Bacterial extracellular solute-binding protein 39 287 6.5E-36 T 11-10-2018 APT56_13610 eb33ac86c72e6a8db9d2cadde31888fc 338 Gene3D G3DSA:3.40.190.10 33 302 1.3E-114 T 11-10-2018 APT56_13610 eb33ac86c72e6a8db9d2cadde31888fc 338 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 19 333 1.1E-122 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 APT56_13610 eb33ac86c72e6a8db9d2cadde31888fc 338 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 150 158 - T 11-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 APT56_13610 eb33ac86c72e6a8db9d2cadde31888fc 338 Gene3D G3DSA:3.40.190.10 119 332 1.3E-114 T 11-10-2018 APT56_09985 40b25196feb694f2b4dbd85ebc638810 133 SUPERFAMILY SSF53062 1 132 3.14E-25 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 APT56_09985 40b25196feb694f2b4dbd85ebc638810 133 Pfam PF03610 PTS system fructose IIA component 4 111 1.4E-16 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 APT56_09985 40b25196feb694f2b4dbd85ebc638810 133 Gene3D G3DSA:3.40.50.510 2 133 5.1E-27 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 APT56_06290 cc8426f85ce964fb82c2293d77a88ecb 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 8.2E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06290 cc8426f85ce964fb82c2293d77a88ecb 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 8.2E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06290 cc8426f85ce964fb82c2293d77a88ecb 207 SUPERFAMILY SSF46689 6 85 7.18E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_06290 cc8426f85ce964fb82c2293d77a88ecb 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 64 1.5E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06290 cc8426f85ce964fb82c2293d77a88ecb 207 SUPERFAMILY SSF48498 87 198 8.15E-12 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_06290 cc8426f85ce964fb82c2293d77a88ecb 207 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 107 198 3.2E-8 T 11-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal APT56_06290 cc8426f85ce964fb82c2293d77a88ecb 207 Gene3D G3DSA:1.10.357.10 3 201 3.3E-35 T 11-10-2018 APT56_01105 01a01b3c1793ec365385c50c3c78cebb 146 SUPERFAMILY SSF54593 2 137 3.99E-23 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_01105 01a01b3c1793ec365385c50c3c78cebb 146 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 125 2.6E-8 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_01105 01a01b3c1793ec365385c50c3c78cebb 146 Gene3D G3DSA:3.10.180.10 1 130 8.8E-35 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_24290 d845dd77973933f171765aabf9c9db37 344 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 76 87 2.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24290 d845dd77973933f171765aabf9c9db37 344 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 66 76 2.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24290 d845dd77973933f171765aabf9c9db37 344 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 55 66 2.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24290 d845dd77973933f171765aabf9c9db37 344 Gene3D G3DSA:3.40.190.10 129 326 1.7E-51 T 11-10-2018 APT56_24290 d845dd77973933f171765aabf9c9db37 344 Gene3D G3DSA:1.10.10.10 37 125 2.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24290 d845dd77973933f171765aabf9c9db37 344 Pfam PF03466 LysR substrate binding domain 124 335 5.0E-34 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_24290 d845dd77973933f171765aabf9c9db37 344 SUPERFAMILY SSF46785 37 148 5.99E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_24290 d845dd77973933f171765aabf9c9db37 344 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 40 97 1.1E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24290 d845dd77973933f171765aabf9c9db37 344 SUPERFAMILY SSF53850 125 341 4.78E-40 T 11-10-2018 APT56_24290 d845dd77973933f171765aabf9c9db37 344 Gene3D G3DSA:3.40.190.10 207 309 1.7E-51 T 11-10-2018 APT56_22480 1c639efc1c3f2f3c304c7373d1f3de17 121 SUPERFAMILY SSF46785 8 105 1.02E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22480 1c639efc1c3f2f3c304c7373d1f3de17 121 SMART SM00418 12 90 3.1E-15 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_22480 1c639efc1c3f2f3c304c7373d1f3de17 121 Gene3D G3DSA:1.10.10.10 7 110 6.2E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22480 1c639efc1c3f2f3c304c7373d1f3de17 121 Pfam PF12840 Helix-turn-helix domain 11 69 1.3E-14 T 11-10-2018 APT56_14620 32309b6c52a7cbc1becd58110acf21e2 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 292 7.4E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_14620 32309b6c52a7cbc1becd58110acf21e2 293 Gene3D G3DSA:1.10.3720.10 51 292 3.0E-59 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14620 32309b6c52a7cbc1becd58110acf21e2 293 SUPERFAMILY SSF161098 55 281 3.66E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15920 98494699a037d4699d7547ca1d23c702 268 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 216 257 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_15920 98494699a037d4699d7547ca1d23c702 268 Pfam PF12833 Helix-turn-helix domain 185 261 1.0E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_15920 98494699a037d4699d7547ca1d23c702 268 Gene3D G3DSA:1.10.10.60 165 264 6.7E-19 T 11-10-2018 APT56_15920 98494699a037d4699d7547ca1d23c702 268 Gene3D G3DSA:2.60.120.10 17 120 2.4E-6 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_15920 98494699a037d4699d7547ca1d23c702 268 SUPERFAMILY SSF46689 216 261 4.93E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_15920 98494699a037d4699d7547ca1d23c702 268 SMART SM00342 179 261 2.6E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_15920 98494699a037d4699d7547ca1d23c702 268 SUPERFAMILY SSF51182 36 188 9.89E-11 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_15920 98494699a037d4699d7547ca1d23c702 268 Pfam PF02311 AraC-like ligand binding domain 32 104 1.9E-8 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_11265 d33456abcc2a5a76a34fa99783b48c7d 234 SUPERFAMILY SSF52317 2 181 2.22E-51 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_11265 d33456abcc2a5a76a34fa99783b48c7d 234 Gene3D G3DSA:3.40.50.880 1 229 7.4E-73 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_11265 d33456abcc2a5a76a34fa99783b48c7d 234 Pfam PF01965 DJ-1/PfpI family 3 162 7.3E-30 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_27700 b3330c3bab0b36db9cb2d9739ca9e3ff 61 ProSitePatterns PS00634 Ribosomal protein L30 signature. 24 56 - T 11-10-2018 IPR018038 Ribosomal protein L30, conserved site APT56_27700 b3330c3bab0b36db9cb2d9739ca9e3ff 61 SUPERFAMILY SSF55129 4 60 1.7E-20 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily APT56_27700 b3330c3bab0b36db9cb2d9739ca9e3ff 61 Gene3D G3DSA:3.30.1390.20 2 60 6.3E-25 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily APT56_27700 b3330c3bab0b36db9cb2d9739ca9e3ff 61 Pfam PF00327 Ribosomal protein L30p/L7e 6 56 2.6E-18 T 11-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain APT56_27700 b3330c3bab0b36db9cb2d9739ca9e3ff 61 PIRSF PIRSF002211 1 61 4.1E-27 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27700 b3330c3bab0b36db9cb2d9739ca9e3ff 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 6 60 1.0E-24 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27700 b3330c3bab0b36db9cb2d9739ca9e3ff 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 60 20.263 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_20885 210f58f798e183f685a3f264cd97faf9 531 PIRSF PIRSF002741 23 517 3.1E-91 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_20885 210f58f798e183f685a3f264cd97faf9 531 Gene3D G3DSA:3.90.76.10 40 189 1.3E-119 T 11-10-2018 APT56_20885 210f58f798e183f685a3f264cd97faf9 531 Gene3D G3DSA:3.40.190.10 190 510 1.3E-119 T 11-10-2018 APT56_20885 210f58f798e183f685a3f264cd97faf9 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 444 7.1E-81 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_20885 210f58f798e183f685a3f264cd97faf9 531 SUPERFAMILY SSF53850 32 511 5.25E-121 T 11-10-2018 APT56_20885 210f58f798e183f685a3f264cd97faf9 531 Gene3D G3DSA:3.10.105.10 264 505 1.3E-119 T 11-10-2018 APT56_26915 57b8bd04973acc436323642ef01bf9c6 412 Gene3D G3DSA:3.50.50.60 125 266 1.4E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_26915 57b8bd04973acc436323642ef01bf9c6 412 Gene3D G3DSA:3.50.50.60 13 331 1.4E-85 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_26915 57b8bd04973acc436323642ef01bf9c6 412 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 129 4.3E-6 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_26915 57b8bd04973acc436323642ef01bf9c6 412 SUPERFAMILY SSF51905 10 154 2.25E-25 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_26915 57b8bd04973acc436323642ef01bf9c6 412 SUPERFAMILY SSF51905 123 266 5.51E-22 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_26395 de0e06a1311698d28e5343341d672338 140 SUPERFAMILY SSF52821 33 138 4.06E-32 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_26395 de0e06a1311698d28e5343341d672338 140 Pfam PF00581 Rhodanese-like domain 42 131 2.4E-18 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_26395 de0e06a1311698d28e5343341d672338 140 SMART SM00450 40 135 7.5E-24 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_26395 de0e06a1311698d28e5343341d672338 140 Gene3D G3DSA:3.40.250.10 38 139 1.7E-29 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_23315 8f1926600c0d0cd5ab53ad325c48b8ef 183 Gene3D G3DSA:3.40.50.2300 8 120 3.5E-25 T 11-10-2018 APT56_23315 8f1926600c0d0cd5ab53ad325c48b8ef 183 SMART SM00448 7 116 2.0E-16 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_23315 8f1926600c0d0cd5ab53ad325c48b8ef 183 Gene3D G3DSA:1.10.10.60 121 175 3.0E-21 T 11-10-2018 APT56_23315 8f1926600c0d0cd5ab53ad325c48b8ef 183 SUPERFAMILY SSF52172 8 146 2.34E-28 T 11-10-2018 IPR011006 CheY-like superfamily APT56_23315 8f1926600c0d0cd5ab53ad325c48b8ef 183 Pfam PF00072 Response regulator receiver domain 8 111 1.2E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_23315 8f1926600c0d0cd5ab53ad325c48b8ef 183 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 139 156 2.5E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_23315 8f1926600c0d0cd5ab53ad325c48b8ef 183 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 156 176 2.5E-8 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_23315 8f1926600c0d0cd5ab53ad325c48b8ef 183 Pfam PF02954 Bacterial regulatory protein, Fis family 136 172 6.5E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1073 13.439 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Gene3D G3DSA:1.10.1030.10 410 555 1.8E-49 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 675 876 4.0E-36 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 341 9.7E-70 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 SUPERFAMILY SSF56059 128 408 9.19E-107 T 11-10-2018 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 429 549 1.6E-42 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 SUPERFAMILY SSF52335 937 1075 6.02E-39 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 SMART SM00851 957 1044 1.1E-31 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 304 311 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 SUPERFAMILY SSF56059 675 935 2.83E-103 T 11-10-2018 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1065 13.213 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 SUPERFAMILY SSF52440 558 677 4.32E-49 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 711 725 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Gene3D G3DSA:3.40.50.20 1 116 1.5E-49 T 11-10-2018 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Gene3D G3DSA:3.30.470.20 667 937 1.4E-118 T 11-10-2018 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 SUPERFAMILY SSF48108 403 556 3.14E-54 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Gene3D G3DSA:3.40.50.20 556 664 6.2E-49 T 11-10-2018 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 840 847 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Gene3D G3DSA:3.40.50.1380 938 1078 4.7E-37 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1054 0.0 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 SMART SM01096 426 549 2.3E-74 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Gene3D G3DSA:3.30.470.20 120 409 4.4E-128 T 11-10-2018 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 SUPERFAMILY SSF52440 1 127 2.01E-48 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 387 405 3.8E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 246 263 3.8E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 304 333 3.8E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 175 187 3.8E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 3.8E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 211 230 3.8E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 3.8E-66 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_21955 614a319c386c53c6b18a842c06920a5a 1080 Pfam PF02142 MGS-like domain 958 1044 1.3E-20 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain APT56_04805 3f1a27033e17497b199572b267cd5ca9 397 SUPERFAMILY SSF89796 3 397 1.22E-124 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_04805 3f1a27033e17497b199572b267cd5ca9 397 Gene3D G3DSA:3.40.50.10540 8 390 3.2E-116 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_04805 3f1a27033e17497b199572b267cd5ca9 397 Gene3D G3DSA:3.30.1540.10 234 327 3.2E-116 T 11-10-2018 APT56_04805 3f1a27033e17497b199572b267cd5ca9 397 Pfam PF02515 CoA-transferase family III 9 374 7.0E-109 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Gene3D G3DSA:1.10.8.60 360 442 8.7E-33 T 11-10-2018 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 61 1.8E-12 T 11-10-2018 IPR004176 Clp, N-terminal APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Gene3D G3DSA:3.40.50.300 443 655 7.7E-78 T 11-10-2018 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 SUPERFAMILY SSF52540 172 419 1.74E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Gene3D G3DSA:1.10.8.60 657 759 1.3E-26 T 11-10-2018 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 SUPERFAMILY SSF81923 2 143 1.57E-54 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 306 318 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 SUPERFAMILY SSF52540 441 742 1.14E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 566 584 2.8E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 495 513 2.8E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 613 2.8E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 537 555 2.8E-38 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 657 737 1.6E-21 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 522 540 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Pfam PF07724 AAA domain (Cdc48 subfamily) 490 651 8.9E-46 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Gene3D G3DSA:3.40.50.300 170 359 2.4E-67 T 11-10-2018 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Gene3D G3DSA:1.10.1780.10 1 144 8.8E-39 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 215 345 4.3E-12 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 SMART SM00382 491 640 4.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 SMART SM00382 210 355 1.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 SMART SM01086 657 747 1.2E-31 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_18185 87efb7487ded1bbe5952ca88fed53d73 769 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 738 0.0 T 11-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 APT56_17905 d466a7a4764780db55b8cdf4db60eff9 398 Gene3D G3DSA:3.40.640.10 44 291 1.2E-111 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_17905 d466a7a4764780db55b8cdf4db60eff9 398 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 394 1.5E-186 T 11-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 APT56_17905 d466a7a4764780db55b8cdf4db60eff9 398 Pfam PF00155 Aminotransferase class I and II 33 376 1.2E-45 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_17905 d466a7a4764780db55b8cdf4db60eff9 398 SUPERFAMILY SSF53383 2 394 7.29E-85 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_17905 d466a7a4764780db55b8cdf4db60eff9 398 Gene3D G3DSA:3.90.1150.10 13 381 1.2E-111 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 Gene3D G3DSA:3.40.190.290 94 270 3.7E-18 T 11-10-2018 APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 Gene3D G3DSA:1.10.10.10 1 90 1.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 Pfam PF03466 LysR substrate binding domain 89 286 1.4E-22 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 SUPERFAMILY SSF46785 4 88 1.2E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 SUPERFAMILY SSF53850 90 286 1.25E-25 T 11-10-2018 APT56_03965 548ecd37a9610e8a7195af27387c1d4d 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.7E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 18 430 1.3E-234 T 11-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 Gene3D G3DSA:1.10.580.10 61 419 2.4E-142 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 Pfam PF00285 Citrate synthase, C-terminal domain 50 419 2.4E-129 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 SUPERFAMILY SSF48256 10 436 4.32E-161 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 Gene3D G3DSA:1.10.230.10 272 384 2.4E-142 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 ProSitePatterns PS00480 Citrate synthase signature. 310 322 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 Gene3D G3DSA:2.20.28.60 1 54 6.5E-26 T 11-10-2018 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 PRINTS PR00143 Citrate synthase signature 387 401 2.6E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 PRINTS PR00143 Citrate synthase signature 367 383 2.6E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 PRINTS PR00143 Citrate synthase signature 169 182 2.6E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 PRINTS PR00143 Citrate synthase signature 223 238 2.6E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 PRINTS PR00143 Citrate synthase signature 245 273 2.6E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 PRINTS PR00143 Citrate synthase signature 303 323 2.6E-54 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07185 8f6e3dfc67b72f2071d62902e5b8c807 436 PIRSF PIRSF001369 41 436 7.4E-162 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type APT56_27355 ab1f4cead33f7b06bca0b0ebdcbe5b7c 680 SUPERFAMILY SSF53756 420 672 8.37E-32 T 11-10-2018 APT56_27355 ab1f4cead33f7b06bca0b0ebdcbe5b7c 680 Gene3D G3DSA:3.40.50.2000 539 652 1.1E-24 T 11-10-2018 APT56_27355 ab1f4cead33f7b06bca0b0ebdcbe5b7c 680 Gene3D G3DSA:3.90.550.10 39 277 5.6E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_27355 ab1f4cead33f7b06bca0b0ebdcbe5b7c 680 Pfam PF13692 Glycosyl transferases group 1 557 637 5.7E-19 T 11-10-2018 APT56_27355 ab1f4cead33f7b06bca0b0ebdcbe5b7c 680 Pfam PF00535 Glycosyl transferase family 2 50 139 1.6E-10 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_27355 ab1f4cead33f7b06bca0b0ebdcbe5b7c 680 Gene3D G3DSA:3.40.50.2000 653 665 1.1E-24 T 11-10-2018 APT56_27355 ab1f4cead33f7b06bca0b0ebdcbe5b7c 680 SUPERFAMILY SSF53448 43 293 3.56E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_01895 ca2b702fef482eba6c816ace85c7e90d 71 Gene3D G3DSA:2.40.50.100 5 69 1.1E-19 T 11-10-2018 APT56_01895 ca2b702fef482eba6c816ace85c7e90d 71 SUPERFAMILY SSF50331 6 69 1.68E-17 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_01895 ca2b702fef482eba6c816ace85c7e90d 71 Pfam PF03459 TOBE domain 8 67 7.7E-16 T 11-10-2018 IPR005116 Transport-associated OB, type 1 APT56_01895 ca2b702fef482eba6c816ace85c7e90d 71 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 5 69 1.8E-18 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 APT56_20390 50061897477db520a567859cab6f6ca0 72 Gene3D G3DSA:3.30.1660.10 2 70 1.7E-36 T 11-10-2018 IPR025543 Dodecin-like APT56_20390 50061897477db520a567859cab6f6ca0 72 SUPERFAMILY SSF89807 5 70 1.01E-26 T 11-10-2018 IPR036694 Dodecin-like superfamily APT56_20390 50061897477db520a567859cab6f6ca0 72 Pfam PF07311 Dodecin 5 68 5.1E-31 T 11-10-2018 IPR009923 Dodecin APT56_06740 040f9b28cc1cbb02f757eadca9b07fbd 322 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 7 322 54.539 T 11-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 APT56_06740 040f9b28cc1cbb02f757eadca9b07fbd 322 SUPERFAMILY SSF56524 69 318 8.37E-89 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 APT56_06740 040f9b28cc1cbb02f757eadca9b07fbd 322 Gene3D G3DSA:3.90.420.10 59 322 3.4E-104 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 APT56_06740 040f9b28cc1cbb02f757eadca9b07fbd 322 Pfam PF00174 Oxidoreductase molybdopterin binding domain 102 256 3.8E-28 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT56_18705 755ce936c2b5e466f6ff969cdbd53f5f 510 Gene3D G3DSA:3.40.190.10 38 278 5.0E-127 T 11-10-2018 APT56_18705 755ce936c2b5e466f6ff969cdbd53f5f 510 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 432 1.7E-93 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_18705 755ce936c2b5e466f6ff969cdbd53f5f 510 Gene3D G3DSA:3.90.76.10 65 179 5.0E-127 T 11-10-2018 APT56_18705 755ce936c2b5e466f6ff969cdbd53f5f 510 PIRSF PIRSF002741 2 508 2.7E-102 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_18705 755ce936c2b5e466f6ff969cdbd53f5f 510 Gene3D G3DSA:3.10.105.10 279 489 5.0E-127 T 11-10-2018 APT56_18705 755ce936c2b5e466f6ff969cdbd53f5f 510 SUPERFAMILY SSF53850 28 509 5.97E-133 T 11-10-2018 APT56_23525 113849626c6c09d0b957ad40d66c0959 298 SUPERFAMILY SSF48008 154 290 4.45E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_23525 113849626c6c09d0b957ad40d66c0959 298 SMART SM00895 159 284 5.7E-11 T 11-10-2018 IPR011711 GntR, C-terminal APT56_23525 113849626c6c09d0b957ad40d66c0959 298 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 64 1.5E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_23525 113849626c6c09d0b957ad40d66c0959 298 Gene3D G3DSA:1.20.120.530 148 292 2.8E-20 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_23525 113849626c6c09d0b957ad40d66c0959 298 Pfam PF07729 FCD domain 160 283 4.9E-18 T 11-10-2018 IPR011711 GntR, C-terminal APT56_23525 113849626c6c09d0b957ad40d66c0959 298 SMART SM00345 7 65 1.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_23525 113849626c6c09d0b957ad40d66c0959 298 Gene3D G3DSA:1.10.10.10 1 65 7.5E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23525 113849626c6c09d0b957ad40d66c0959 298 SUPERFAMILY SSF46785 5 66 2.28E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22695 61f57f8cf21c8446905abf3927ffc70f 212 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 2.3E-83 T 11-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APT56_22695 61f57f8cf21c8446905abf3927ffc70f 212 SUPERFAMILY SSF53271 3 206 1.44E-65 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APT56_22695 61f57f8cf21c8446905abf3927ffc70f 212 Gene3D G3DSA:3.40.50.2020 2 208 1.7E-68 T 11-10-2018 APT56_22695 61f57f8cf21c8446905abf3927ffc70f 212 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 42.648 T 11-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APT56_22695 61f57f8cf21c8446905abf3927ffc70f 212 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 2.5E-62 T 11-10-2018 APT56_17315 23a45d7d59f60416819e8e04b4ef243e 311 Pfam PF12697 Alpha/beta hydrolase family 38 303 1.6E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_17315 23a45d7d59f60416819e8e04b4ef243e 311 PRINTS PR00111 Alpha/beta hydrolase fold signature 61 76 1.1E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_17315 23a45d7d59f60416819e8e04b4ef243e 311 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 1.1E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_17315 23a45d7d59f60416819e8e04b4ef243e 311 Gene3D G3DSA:3.40.50.1820 9 310 2.3E-71 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_17315 23a45d7d59f60416819e8e04b4ef243e 311 SUPERFAMILY SSF53474 15 304 7.33E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_01165 9ba826e9c77527f903359a99cf250993 130 SMART SM00530 6 64 7.7E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_01165 9ba826e9c77527f903359a99cf250993 130 SUPERFAMILY SSF47413 2 66 2.67E-9 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_01165 9ba826e9c77527f903359a99cf250993 130 Gene3D G3DSA:1.10.260.40 2 64 6.2E-10 T 11-10-2018 APT56_01165 9ba826e9c77527f903359a99cf250993 130 Pfam PF13560 Helix-turn-helix domain 3 61 2.5E-7 T 11-10-2018 APT56_14560 bbe44bbb1008c2aa66a61207aeb196ec 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 321 8.0E-85 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_14560 bbe44bbb1008c2aa66a61207aeb196ec 326 PIRSF PIRSF017082 1 324 7.7E-88 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_14560 bbe44bbb1008c2aa66a61207aeb196ec 326 Gene3D G3DSA:3.40.190.10 127 250 4.3E-109 T 11-10-2018 APT56_14560 bbe44bbb1008c2aa66a61207aeb196ec 326 Gene3D G3DSA:3.40.190.150 29 315 4.3E-109 T 11-10-2018 APT56_14560 bbe44bbb1008c2aa66a61207aeb196ec 326 SUPERFAMILY SSF53850 113 284 1.23E-15 T 11-10-2018 APT56_05210 00cedd761404c9e39cbd84d7d82e1e37 271 SUPERFAMILY SSF52540 1 269 1.75E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05210 00cedd761404c9e39cbd84d7d82e1e37 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 226 2.5E-18 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain APT56_05210 00cedd761404c9e39cbd84d7d82e1e37 271 PIRSF PIRSF003092 1 271 1.4E-91 T 11-10-2018 IPR025501 ATP binding protein MinD APT56_05210 00cedd761404c9e39cbd84d7d82e1e37 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 268 3.1E-103 T 11-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 APT56_05210 00cedd761404c9e39cbd84d7d82e1e37 271 Gene3D G3DSA:3.40.50.300 1 260 7.0E-69 T 11-10-2018 APT56_07345 05352d726da303577765259d3cc99344 178 PIRSF PIRSF017018 1 178 6.9E-87 T 11-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type APT56_07345 05352d726da303577765259d3cc99344 178 Pfam PF10634 Fe2+ transport protein 20 171 1.9E-70 T 11-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type APT56_07345 05352d726da303577765259d3cc99344 178 Gene3D G3DSA:2.60.40.2480 19 178 2.3E-72 T 11-10-2018 IPR038482 Periplasmic metal-binding protein tp34-type superfamily APT56_19270 3fd7887d2592a5df29c340b69469a60d 294 Pfam PF01380 SIS domain 142 270 6.7E-15 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_19270 3fd7887d2592a5df29c340b69469a60d 294 Pfam PF01418 Helix-turn-helix domain, rpiR family 22 88 4.1E-13 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 APT56_19270 3fd7887d2592a5df29c340b69469a60d 294 SUPERFAMILY SSF53697 115 276 9.24E-29 T 11-10-2018 APT56_19270 3fd7887d2592a5df29c340b69469a60d 294 Gene3D G3DSA:3.40.50.10490 110 287 1.0E-33 T 11-10-2018 APT56_19270 3fd7887d2592a5df29c340b69469a60d 294 Gene3D G3DSA:1.10.10.10 14 95 3.6E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19270 3fd7887d2592a5df29c340b69469a60d 294 SUPERFAMILY SSF46689 20 89 6.45E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_21375 28c0fe9fbffb50ce4d150283c52a746d 338 Pfam PF13407 Periplasmic binding protein domain 35 291 5.1E-65 T 11-10-2018 IPR025997 Periplasmic binding protein APT56_21375 28c0fe9fbffb50ce4d150283c52a746d 338 TIGRFAM TIGR02634 xylF: D-xylose ABC transporter, D-xylose-binding protein 34 335 1.9E-134 T 11-10-2018 IPR013456 D-xylose ABC transporter, substrate-binding protein GO:0015753|GO:0048029 APT56_21375 28c0fe9fbffb50ce4d150283c52a746d 338 SUPERFAMILY SSF53822 32 322 1.28E-72 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_21375 28c0fe9fbffb50ce4d150283c52a746d 338 Gene3D G3DSA:3.40.50.2300 135 322 2.5E-113 T 11-10-2018 APT56_21375 28c0fe9fbffb50ce4d150283c52a746d 338 Gene3D G3DSA:3.40.50.2300 35 311 2.5E-113 T 11-10-2018 APT56_26865 ca95c3a992381fe880bc3709cd9e5c0c 142 Pfam PF02566 OsmC-like protein 44 138 2.6E-15 T 11-10-2018 IPR003718 OsmC/Ohr family APT56_26865 ca95c3a992381fe880bc3709cd9e5c0c 142 Gene3D G3DSA:2.20.25.10 1 47 4.0E-23 T 11-10-2018 APT56_26865 ca95c3a992381fe880bc3709cd9e5c0c 142 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 139 8.8E-54 T 11-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 APT56_26865 ca95c3a992381fe880bc3709cd9e5c0c 142 Gene3D G3DSA:3.30.300.20 48 141 1.5E-32 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_26865 ca95c3a992381fe880bc3709cd9e5c0c 142 SUPERFAMILY SSF82784 1 141 7.33E-44 T 11-10-2018 IPR036102 OsmC/Ohr superfamily APT56_25330 9659afb1004f35bfe172757ffd955c16 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 165 1.7E-21 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_25330 9659afb1004f35bfe172757ffd955c16 169 SUPERFAMILY SSF88659 104 166 1.4E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_25330 9659afb1004f35bfe172757ffd955c16 169 Pfam PF04542 Sigma-70 region 2 10 75 5.8E-9 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_25330 9659afb1004f35bfe172757ffd955c16 169 Gene3D G3DSA:1.10.10.10 91 167 3.0E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25330 9659afb1004f35bfe172757ffd955c16 169 SUPERFAMILY SSF88946 5 73 2.47E-13 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_25330 9659afb1004f35bfe172757ffd955c16 169 Pfam PF08281 Sigma-70, region 4 110 159 3.7E-17 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_25330 9659afb1004f35bfe172757ffd955c16 169 Gene3D G3DSA:1.10.1740.10 3 73 1.4E-9 T 11-10-2018 APT56_04380 9135edf8091495a6cb9b33bc548babc6 327 Gene3D G3DSA:2.70.70.10 148 311 1.2E-50 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_04380 9135edf8091495a6cb9b33bc548babc6 327 SUPERFAMILY SSF51261 163 307 1.26E-57 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_04380 9135edf8091495a6cb9b33bc548babc6 327 Pfam PF01551 Peptidase family M23 209 303 1.3E-34 T 11-10-2018 IPR016047 Peptidase M23 APT56_24995 4c11bd3632b23fe0098fc3bbc873a90b 420 Gene3D G3DSA:3.40.50.2300 59 387 2.3E-136 T 11-10-2018 APT56_24995 4c11bd3632b23fe0098fc3bbc873a90b 420 Pfam PF13433 Periplasmic binding protein domain 58 417 5.5E-134 T 11-10-2018 APT56_24995 4c11bd3632b23fe0098fc3bbc873a90b 420 Gene3D G3DSA:3.40.50.2300 172 406 2.3E-136 T 11-10-2018 APT56_24995 4c11bd3632b23fe0098fc3bbc873a90b 420 SUPERFAMILY SSF53822 56 416 6.06E-97 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_24995 4c11bd3632b23fe0098fc3bbc873a90b 420 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 57 415 1.6E-162 T 11-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like APT56_17955 c3f996248155dd1a9cf5535acc8c636d 101 Pfam PF01817 Chorismate mutase type II 15 89 3.3E-16 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_17955 c3f996248155dd1a9cf5535acc8c636d 101 SUPERFAMILY SSF48600 8 94 5.04E-21 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_17955 c3f996248155dd1a9cf5535acc8c636d 101 Gene3D G3DSA:1.20.59.10 1 100 2.2E-30 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_17955 c3f996248155dd1a9cf5535acc8c636d 101 SMART SM00830 15 95 7.2E-21 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_24725 3cb0d927f0103b8c45df10d79ffe3f1b 501 Pfam PF07364 Metallopeptidase family M81 2 292 1.8E-105 T 11-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal APT56_24725 3cb0d927f0103b8c45df10d79ffe3f1b 501 Pfam PF07171 MlrC C-terminus 304 481 2.4E-56 T 11-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal APT56_24725 3cb0d927f0103b8c45df10d79ffe3f1b 501 PIRSF PIRSF012702 1 500 6.3E-180 T 11-10-2018 IPR009197 Microcystin LR degradation protein MlrC APT56_19980 b2a7d138c8ece0d864399d9082edd3a5 424 Gene3D G3DSA:3.40.50.2000 1 212 1.6E-24 T 11-10-2018 APT56_19980 b2a7d138c8ece0d864399d9082edd3a5 424 Pfam PF00534 Glycosyl transferases group 1 217 381 1.8E-15 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_19980 b2a7d138c8ece0d864399d9082edd3a5 424 Gene3D G3DSA:3.40.50.2000 213 383 9.5E-27 T 11-10-2018 APT56_19980 b2a7d138c8ece0d864399d9082edd3a5 424 Pfam PF13579 Glycosyl transferase 4-like domain 15 202 2.7E-29 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_19980 b2a7d138c8ece0d864399d9082edd3a5 424 SUPERFAMILY SSF53756 2 397 3.14E-52 T 11-10-2018 APT56_24165 888e5bf3c8ad88b856d78b93b18de2c4 407 SMART SM01034 2 94 1.8E-34 T 11-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 APT56_24165 888e5bf3c8ad88b856d78b93b18de2c4 407 Gene3D G3DSA:3.20.20.450 151 403 9.3E-76 T 11-10-2018 IPR035919 EAL domain superfamily APT56_24165 888e5bf3c8ad88b856d78b93b18de2c4 407 Pfam PF00563 EAL domain 171 387 1.2E-48 T 11-10-2018 IPR001633 EAL domain APT56_24165 888e5bf3c8ad88b856d78b93b18de2c4 407 SUPERFAMILY SSF141868 168 387 8.89E-53 T 11-10-2018 IPR035919 EAL domain superfamily APT56_24165 888e5bf3c8ad88b856d78b93b18de2c4 407 Gene3D G3DSA:3.30.70.3200 1 139 1.1E-36 T 11-10-2018 APT56_24165 888e5bf3c8ad88b856d78b93b18de2c4 407 SMART SM00052 154 392 9.9E-42 T 11-10-2018 IPR001633 EAL domain APT56_24165 888e5bf3c8ad88b856d78b93b18de2c4 407 Pfam PF04940 Sensors of blue-light using FAD 2 92 5.9E-23 T 11-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 APT56_24165 888e5bf3c8ad88b856d78b93b18de2c4 407 SUPERFAMILY SSF54975 1 128 4.91E-31 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 Gene3D G3DSA:3.40.190.10 91 287 3.1E-66 T 11-10-2018 APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.5E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 Gene3D G3DSA:3.40.190.10 164 269 3.1E-66 T 11-10-2018 APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.3E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 Gene3D G3DSA:1.10.10.10 1 90 5.8E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 Pfam PF03466 LysR substrate binding domain 87 292 7.8E-47 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 SUPERFAMILY SSF46785 1 86 5.44E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14400 2c5844635a0a33a06c0c2058a6a03840 300 SUPERFAMILY SSF53850 88 297 4.84E-41 T 11-10-2018 APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 SUPERFAMILY SSF48557 7 450 6.28E-99 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 PRINTS PR00149 Fumarate lyase superfamily signature 120 138 3.2E-14 T 11-10-2018 IPR000362 Fumarate lyase family APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 PRINTS PR00149 Fumarate lyase superfamily signature 297 313 3.2E-14 T 11-10-2018 IPR000362 Fumarate lyase family APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 PRINTS PR00149 Fumarate lyase superfamily signature 166 184 3.2E-14 T 11-10-2018 IPR000362 Fumarate lyase family APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 16 454 2.6E-120 T 11-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 Gene3D G3DSA:1.20.200.10 121 449 3.8E-143 T 11-10-2018 APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 ProSitePatterns PS00163 Fumarate lyases signature. 297 306 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 Pfam PF08328 Adenylosuccinate lyase C-terminal 334 448 9.2E-49 T 11-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 Gene3D G3DSA:1.10.275.10 2 120 5.7E-41 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 Gene3D G3DSA:1.10.40.30 385 448 3.8E-143 T 11-10-2018 APT56_08495 fd8bf563206d75c1fbe38a028d9920e2 458 Pfam PF00206 Lyase 18 315 5.9E-56 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal APT56_01985 d2a83dbd3965b4c48d119700a9291caa 687 Gene3D G3DSA:3.40.720.10 287 587 7.0E-29 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_01985 d2a83dbd3965b4c48d119700a9291caa 687 Pfam PF00884 Sulfatase 296 585 6.3E-16 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 APT56_01985 d2a83dbd3965b4c48d119700a9291caa 687 SUPERFAMILY SSF53649 294 614 8.11E-25 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APT56_13930 5461e7112a233a804396be734cb54b20 323 Gene3D G3DSA:3.40.190.290 109 315 1.1E-28 T 11-10-2018 APT56_13930 5461e7112a233a804396be734cb54b20 323 SUPERFAMILY SSF46785 18 97 6.69E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13930 5461e7112a233a804396be734cb54b20 323 Pfam PF03466 LysR substrate binding domain 105 310 2.8E-31 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_13930 5461e7112a233a804396be734cb54b20 323 Gene3D G3DSA:1.10.10.10 15 102 2.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13930 5461e7112a233a804396be734cb54b20 323 SUPERFAMILY SSF53850 106 317 4.03E-35 T 11-10-2018 APT56_13930 5461e7112a233a804396be734cb54b20 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 47 6.8E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13930 5461e7112a233a804396be734cb54b20 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 57 68 6.8E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13930 5461e7112a233a804396be734cb54b20 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 57 6.8E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13930 5461e7112a233a804396be734cb54b20 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 80 1.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02795 856b87328222590e629ca4f8be3a5969 396 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 88 152 2.4E-17 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_02795 856b87328222590e629ca4f8be3a5969 396 Gene3D G3DSA:1.10.3720.10 82 177 5.8E-9 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02795 856b87328222590e629ca4f8be3a5969 396 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 266 391 2.8E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_02795 856b87328222590e629ca4f8be3a5969 396 Gene3D G3DSA:1.10.3720.10 182 392 1.6E-35 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02795 856b87328222590e629ca4f8be3a5969 396 SUPERFAMILY SSF161098 88 377 9.0E-37 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16750 0c9be3d36fd931fa505281a887b85199 331 Gene3D G3DSA:3.40.190.10 133 256 3.7E-110 T 11-10-2018 APT56_16750 0c9be3d36fd931fa505281a887b85199 331 SUPERFAMILY SSF53850 120 293 6.52E-15 T 11-10-2018 APT56_16750 0c9be3d36fd931fa505281a887b85199 331 Gene3D G3DSA:3.40.190.150 36 321 3.7E-110 T 11-10-2018 APT56_16750 0c9be3d36fd931fa505281a887b85199 331 PIRSF PIRSF017082 5 331 2.4E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_16750 0c9be3d36fd931fa505281a887b85199 331 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 327 2.5E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_15655 d549a7ff04f9fec1c84c789031b3c340 216 Gene3D G3DSA:1.10.10.10 143 216 2.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15655 d549a7ff04f9fec1c84c789031b3c340 216 Gene3D G3DSA:3.90.79.10 1 133 2.7E-33 T 11-10-2018 APT56_15655 d549a7ff04f9fec1c84c789031b3c340 216 SUPERFAMILY SSF46785 145 210 1.5E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15655 d549a7ff04f9fec1c84c789031b3c340 216 SUPERFAMILY SSF55811 3 140 3.93E-29 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_05040 a87abbf8b8041780916de13bc8a00a26 259 SUPERFAMILY SSF55781 65 247 1.7E-45 T 11-10-2018 APT56_05040 a87abbf8b8041780916de13bc8a00a26 259 Gene3D G3DSA:3.30.450.40 80 254 1.4E-47 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_05040 a87abbf8b8041780916de13bc8a00a26 259 Pfam PF01614 Bacterial transcriptional regulator 125 238 1.4E-24 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_05040 a87abbf8b8041780916de13bc8a00a26 259 Gene3D G3DSA:1.10.10.10 2 77 1.1E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05040 a87abbf8b8041780916de13bc8a00a26 259 Pfam PF09339 IclR helix-turn-helix domain 14 59 9.6E-11 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_05040 a87abbf8b8041780916de13bc8a00a26 259 SMART SM00346 9 97 1.2E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_05040 a87abbf8b8041780916de13bc8a00a26 259 SUPERFAMILY SSF46785 12 81 1.94E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22730 4282593fc297e2894e1f1b44f62a83a7 378 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 372 55.376 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT56_22730 4282593fc297e2894e1f1b44f62a83a7 378 SUPERFAMILY SSF51713 3 371 2.22E-157 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT56_22730 4282593fc297e2894e1f1b44f62a83a7 378 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 371 1.9E-159 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT56_22730 4282593fc297e2894e1f1b44f62a83a7 378 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 371 3.0E-166 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT56_22730 4282593fc297e2894e1f1b44f62a83a7 378 Gene3D G3DSA:3.20.20.105 1 375 4.5E-165 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT56_22730 4282593fc297e2894e1f1b44f62a83a7 378 Pfam PF01702 Queuine tRNA-ribosyltransferase 129 369 5.5E-91 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APT56_24270 f3dabbdc7550cb0b4fade1aebb1ee566 352 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 24 282 4.5E-21 T 11-10-2018 IPR017039 Virulence factor BrkB APT56_24270 f3dabbdc7550cb0b4fade1aebb1ee566 352 Pfam PF03631 Virulence factor BrkB 29 285 2.4E-53 T 11-10-2018 IPR017039 Virulence factor BrkB APT56_24270 f3dabbdc7550cb0b4fade1aebb1ee566 352 PIRSF PIRSF035875 5 308 8.0E-74 T 11-10-2018 IPR017039 Virulence factor BrkB APT56_19925 52492fb9e4c4316f6ae120da472dd361 141 Gene3D G3DSA:3.90.79.10 1 140 5.6E-30 T 11-10-2018 APT56_19925 52492fb9e4c4316f6ae120da472dd361 141 Pfam PF00293 NUDIX domain 5 127 1.9E-12 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_19925 52492fb9e4c4316f6ae120da472dd361 141 PIRSF PIRSF037599 1 140 6.7E-47 T 11-10-2018 IPR033715 GDP-mannose mannosyl hydrolase GO:0008727 APT56_19925 52492fb9e4c4316f6ae120da472dd361 141 SUPERFAMILY SSF55811 3 132 5.42E-23 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_18295 6c3ca3d9bba37c0261349c850f69656e 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 1.1E-28 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_18295 6c3ca3d9bba37c0261349c850f69656e 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.465 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_18295 6c3ca3d9bba37c0261349c850f69656e 87 Gene3D G3DSA:1.20.58.110 1 87 1.6E-28 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_18295 6c3ca3d9bba37c0261349c850f69656e 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 86 4.0E-31 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_18295 6c3ca3d9bba37c0261349c850f69656e 87 SUPERFAMILY SSF46992 3 86 7.72E-30 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_18295 6c3ca3d9bba37c0261349c850f69656e 87 Pfam PF01649 Ribosomal protein S20 2 84 9.2E-26 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_20200 8432b1966cf019fd4844632fa18c5f08 1115 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 629 1115 3.5E-76 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_20200 8432b1966cf019fd4844632fa18c5f08 1115 SMART SM00869 829 1104 2.8E-29 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_20200 8432b1966cf019fd4844632fa18c5f08 1115 SUPERFAMILY SSF51126 268 753 8.47E-44 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_20200 8432b1966cf019fd4844632fa18c5f08 1115 Gene3D G3DSA:2.160.20.20 21 271 1.8E-12 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily APT56_20200 8432b1966cf019fd4844632fa18c5f08 1115 Gene3D G3DSA:2.160.20.20 272 753 2.3E-70 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily APT56_20200 8432b1966cf019fd4844632fa18c5f08 1115 SUPERFAMILY SSF103515 799 1115 5.23E-36 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_20200 8432b1966cf019fd4844632fa18c5f08 1115 Gene3D G3DSA:2.40.128.130 790 1115 2.4E-79 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_15525 ef717662439e4891a51803e4d71014a4 283 Pfam PF02517 CAAX protease self-immunity 176 268 2.7E-22 T 11-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 APT56_09270 f928e55934d7da9bd64fe07e746058c7 329 Gene3D G3DSA:3.90.180.10 16 322 1.2E-115 T 11-10-2018 APT56_09270 f928e55934d7da9bd64fe07e746058c7 329 Gene3D G3DSA:3.40.50.720 127 272 1.2E-115 T 11-10-2018 APT56_09270 f928e55934d7da9bd64fe07e746058c7 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 90 4.9E-9 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_09270 f928e55934d7da9bd64fe07e746058c7 329 Pfam PF00107 Zinc-binding dehydrogenase 155 262 5.8E-27 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_09270 f928e55934d7da9bd64fe07e746058c7 329 SMART SM00829 15 326 2.8E-34 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_09270 f928e55934d7da9bd64fe07e746058c7 329 SUPERFAMILY SSF50129 6 148 7.7E-38 T 11-10-2018 IPR011032 GroES-like superfamily APT56_09270 f928e55934d7da9bd64fe07e746058c7 329 SUPERFAMILY SSF51735 115 271 6.68E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_04375 2f89901aa0f0115fe530918e4810b170 163 Pfam PF05258 Protein of unknown function (DUF721) 34 98 4.2E-7 T 11-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 SMART SM01400 6 123 1.1E-72 T 11-10-2018 APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 Gene3D G3DSA:3.40.50.2020 9 303 4.1E-127 T 11-10-2018 APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 Pfam PF14572 Phosphoribosyl synthetase-associated domain 205 314 2.4E-28 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 7 123 1.0E-46 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 SUPERFAMILY SSF53271 71 306 6.51E-65 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 6 315 48.387 T 11-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 131 146 - T 11-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 Gene3D G3DSA:3.40.50.2020 150 291 4.1E-127 T 11-10-2018 APT56_24495 5e68a7adde2d430106f9ffb21aeb907b 316 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 7 314 3.2E-119 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APT56_01850 1c17a38e519fa089d1736917bee59c74 197 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 3 171 7.1E-69 T 11-10-2018 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 APT56_01850 1c17a38e519fa089d1736917bee59c74 197 Pfam PF03358 NADPH-dependent FMN reductase 1 142 1.0E-32 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 APT56_01850 1c17a38e519fa089d1736917bee59c74 197 SUPERFAMILY SSF52218 1 169 5.32E-34 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_01850 1c17a38e519fa089d1736917bee59c74 197 Gene3D G3DSA:3.40.50.360 1 182 2.9E-48 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 Gene3D G3DSA:3.40.50.970 16 196 1.4E-66 T 11-10-2018 APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 458 477 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 SUPERFAMILY SSF52467 217 388 8.86E-57 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 421 569 2.7E-53 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 SUPERFAMILY SSF52518 399 594 1.14E-69 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 SUPERFAMILY SSF52518 19 185 2.9E-59 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 Gene3D G3DSA:3.40.50.970 392 600 5.5E-74 T 11-10-2018 APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 22 592 8.6E-214 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 223 360 2.5E-41 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 Gene3D G3DSA:3.40.50.1220 217 386 2.0E-56 T 11-10-2018 APT56_00615 bf4accd45d9d2c576f87ef236e88781f 603 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 22 185 6.5E-57 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APT56_24585 ed43a27019fc6b3b3989fbd6b61bcdbf 325 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 35 284 8.8E-74 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_24585 ed43a27019fc6b3b3989fbd6b61bcdbf 325 SUPERFAMILY SSF53850 141 251 2.44E-5 T 11-10-2018 APT56_24585 ed43a27019fc6b3b3989fbd6b61bcdbf 325 Gene3D G3DSA:3.40.190.170 27 325 1.3E-117 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_24585 ed43a27019fc6b3b3989fbd6b61bcdbf 325 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 308 1.3E-93 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_24585 ed43a27019fc6b3b3989fbd6b61bcdbf 325 PIRSF PIRSF006470 1 325 2.1E-98 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_23410 a986f72b12b457ecf848b2e82d11184d 309 Pfam PF03466 LysR substrate binding domain 89 290 6.6E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_23410 a986f72b12b457ecf848b2e82d11184d 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23410 a986f72b12b457ecf848b2e82d11184d 309 SUPERFAMILY SSF53850 89 293 8.19E-40 T 11-10-2018 APT56_23410 a986f72b12b457ecf848b2e82d11184d 309 Gene3D G3DSA:1.10.10.10 3 92 1.3E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23410 a986f72b12b457ecf848b2e82d11184d 309 Gene3D G3DSA:3.40.190.290 93 299 7.1E-43 T 11-10-2018 APT56_23410 a986f72b12b457ecf848b2e82d11184d 309 SUPERFAMILY SSF46785 1 113 5.9E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22980 d7433f3b692cefc1fbfbdbe445c924ce 220 SMART SM00448 1 112 1.4E-41 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_22980 d7433f3b692cefc1fbfbdbe445c924ce 220 Gene3D G3DSA:1.10.10.10 122 219 1.8E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22980 d7433f3b692cefc1fbfbdbe445c924ce 220 SUPERFAMILY SSF52172 1 175 4.55E-41 T 11-10-2018 IPR011006 CheY-like superfamily APT56_22980 d7433f3b692cefc1fbfbdbe445c924ce 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 2.3E-25 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_22980 d7433f3b692cefc1fbfbdbe445c924ce 220 SMART SM00862 145 216 3.4E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_22980 d7433f3b692cefc1fbfbdbe445c924ce 220 Gene3D G3DSA:3.40.50.2300 1 121 1.6E-41 T 11-10-2018 APT56_22980 d7433f3b692cefc1fbfbdbe445c924ce 220 Pfam PF00072 Response regulator receiver domain 3 113 5.6E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_22845 1f8904f7045ccd29e9b49de48c5e5b33 167 Pfam PF08534 Redoxin 4 164 5.8E-35 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APT56_22845 1f8904f7045ccd29e9b49de48c5e5b33 167 Gene3D G3DSA:3.40.30.10 1 167 3.9E-58 T 11-10-2018 APT56_22845 1f8904f7045ccd29e9b49de48c5e5b33 167 SUPERFAMILY SSF52833 1 166 1.97E-32 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_23360 c0c3d6fbae1e79292020843192dfc164 71 Pfam PF04102 SlyX 8 71 3.2E-19 T 11-10-2018 IPR007236 SlyX APT56_22150 3aaf5ddf7dd2445e8392bb729e9c8591 701 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 65 701 2.2E-102 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_22150 3aaf5ddf7dd2445e8392bb729e9c8591 701 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 684 701 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_22150 3aaf5ddf7dd2445e8392bb729e9c8591 701 Gene3D G3DSA:2.40.170.20 175 701 1.0E-93 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_22150 3aaf5ddf7dd2445e8392bb729e9c8591 701 Pfam PF00593 TonB dependent receptor 275 700 1.1E-42 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_22150 3aaf5ddf7dd2445e8392bb729e9c8591 701 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 163 2.1E-13 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_22150 3aaf5ddf7dd2445e8392bb729e9c8591 701 SUPERFAMILY SSF56935 23 701 1.59E-114 T 11-10-2018 APT56_22150 3aaf5ddf7dd2445e8392bb729e9c8591 701 Gene3D G3DSA:2.170.130.10 54 174 3.7E-20 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_07355 9169f7b79a64c7d9f3c4a9b462862e6d 281 Pfam PF03239 Iron permease FTR1 family 3 263 8.7E-23 T 11-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 Pfam PF03477 ATP cone domain 34 130 7.6E-16 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 SUPERFAMILY SSF48168 160 370 1.57E-58 T 11-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 755 777 - T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 Pfam PF02867 Ribonucleotide reductase, barrel domain 372 911 6.3E-182 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 Gene3D G3DSA:3.20.70.20 273 915 4.6E-245 T 11-10-2018 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 298 914 4.3E-210 T 11-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 295 366 6.8E-21 T 11-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 PRINTS PR01183 Ribonucleotide reductase large chain signature 690 713 1.2E-42 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 PRINTS PR01183 Ribonucleotide reductase large chain signature 766 793 1.2E-42 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 PRINTS PR01183 Ribonucleotide reductase large chain signature 447 466 1.2E-42 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 PRINTS PR01183 Ribonucleotide reductase large chain signature 662 684 1.2E-42 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 PRINTS PR01183 Ribonucleotide reductase large chain signature 582 593 1.2E-42 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 PRINTS PR01183 Ribonucleotide reductase large chain signature 624 647 1.2E-42 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_03365 7c1d015cdae69a35b92a64b8fd5b915f 976 SUPERFAMILY SSF51998 371 914 3.36E-180 T 11-10-2018 APT56_26660 a9d389b96b09fa200e01d38d3eb1ac97 111 SUPERFAMILY SSF69754 1 100 5.23E-33 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like APT56_26660 a9d389b96b09fa200e01d38d3eb1ac97 111 Gene3D G3DSA:3.30.160.100 1 106 4.9E-33 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like APT56_26660 a9d389b96b09fa200e01d38d3eb1ac97 111 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 92 6.9E-25 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 APT56_26660 a9d389b96b09fa200e01d38d3eb1ac97 111 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 1.1E-30 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 APT56_14670 0759ed635c72e2d98891799869d97f10 644 Gene3D G3DSA:1.25.40.10 70 144 1.1E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14670 0759ed635c72e2d98891799869d97f10 644 SUPERFAMILY SSF48452 249 387 6.27E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14670 0759ed635c72e2d98891799869d97f10 644 SUPERFAMILY SSF48452 37 128 1.26E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14670 0759ed635c72e2d98891799869d97f10 644 Gene3D G3DSA:1.25.40.10 196 373 4.4E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_22265 58ce8a298bc3047ed1daebb7568f0fff 340 Gene3D G3DSA:3.40.190.10 122 228 5.1E-51 T 11-10-2018 APT56_22265 58ce8a298bc3047ed1daebb7568f0fff 340 Gene3D G3DSA:3.40.190.10 30 243 5.1E-51 T 11-10-2018 APT56_22265 58ce8a298bc3047ed1daebb7568f0fff 340 SMART SM00062 35 265 1.9E-46 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_22265 58ce8a298bc3047ed1daebb7568f0fff 340 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 255 2.0E-29 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_22265 58ce8a298bc3047ed1daebb7568f0fff 340 SUPERFAMILY SSF53850 26 260 6.26E-46 T 11-10-2018 APT56_03080 a3e1f25b9b013e3d713609ddb9f08486 546 Gene3D G3DSA:3.40.50.12780 32 442 2.9E-95 T 11-10-2018 APT56_03080 a3e1f25b9b013e3d713609ddb9f08486 546 SUPERFAMILY SSF56801 29 545 3.92E-135 T 11-10-2018 APT56_03080 a3e1f25b9b013e3d713609ddb9f08486 546 Gene3D G3DSA:3.30.300.310 445 546 8.9E-29 T 11-10-2018 APT56_03080 a3e1f25b9b013e3d713609ddb9f08486 546 Pfam PF00501 AMP-binding enzyme 50 449 2.2E-75 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_03080 a3e1f25b9b013e3d713609ddb9f08486 546 Pfam PF13193 AMP-binding enzyme C-terminal domain 458 536 3.8E-23 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_03080 a3e1f25b9b013e3d713609ddb9f08486 546 ProSitePatterns PS00455 Putative AMP-binding domain signature. 208 219 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_17445 3bcb0c1e9f4d4b25089d9acc831d9344 128 Gene3D G3DSA:2.60.40.790 1 127 5.3E-26 T 11-10-2018 IPR008978 HSP20-like chaperone APT56_17445 3bcb0c1e9f4d4b25089d9acc831d9344 128 SUPERFAMILY SSF49764 17 126 1.92E-26 T 11-10-2018 IPR008978 HSP20-like chaperone APT56_17445 3bcb0c1e9f4d4b25089d9acc831d9344 128 Pfam PF00011 Hsp20/alpha crystallin family 27 125 4.9E-17 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain APT56_21550 b8e7f6c8465dcbda3fc84b47fbfdb9fc 314 Gene3D G3DSA:1.10.1040.10 193 314 7.3E-33 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_21550 b8e7f6c8465dcbda3fc84b47fbfdb9fc 314 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 13 188 4.7E-49 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_21550 b8e7f6c8465dcbda3fc84b47fbfdb9fc 314 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 192 257 3.8E-13 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_21550 b8e7f6c8465dcbda3fc84b47fbfdb9fc 314 SUPERFAMILY SSF48179 192 284 5.95E-14 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_21550 b8e7f6c8465dcbda3fc84b47fbfdb9fc 314 SUPERFAMILY SSF51735 10 189 5.86E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_21550 b8e7f6c8465dcbda3fc84b47fbfdb9fc 314 Gene3D G3DSA:3.40.50.720 7 192 2.5E-53 T 11-10-2018 APT56_22275 9192907012f5380fb65a06daf4fa4cd8 226 SMART SM00882 6 219 6.4E-76 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_22275 9192907012f5380fb65a06daf4fa4cd8 226 Gene3D G3DSA:3.40.1080.10 1 223 5.9E-77 T 11-10-2018 APT56_22275 9192907012f5380fb65a06daf4fa4cd8 226 SUPERFAMILY SSF100950 2 221 4.01E-75 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_22275 9192907012f5380fb65a06daf4fa4cd8 226 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 220 8.0E-109 T 11-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 APT56_22275 9192907012f5380fb65a06daf4fa4cd8 226 Pfam PF01144 Coenzyme A transferase 7 217 5.8E-61 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_23535 d523f38183c7fdf014de3c832f05f651 331 Pfam PF16344 Domain of unknown function (DUF4974) 247 312 2.8E-7 T 11-10-2018 IPR032508 Protein FecR, C-terminal APT56_23535 d523f38183c7fdf014de3c832f05f651 331 Pfam PF16220 Domain of unknown function (DUF4880) 18 58 3.7E-7 T 11-10-2018 IPR032623 FecR, N-terminal APT56_23535 d523f38183c7fdf014de3c832f05f651 331 Gene3D G3DSA:2.60.120.1440 113 231 3.5E-22 T 11-10-2018 APT56_23535 d523f38183c7fdf014de3c832f05f651 331 PIRSF PIRSF018266 6 330 1.7E-74 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_23535 d523f38183c7fdf014de3c832f05f651 331 Pfam PF04773 FecR protein 125 213 5.1E-19 T 11-10-2018 IPR006860 FecR protein APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 14 48 3.6E-6 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 73 119 2.5E-7 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 10 327 57.586 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 Gene3D G3DSA:1.10.443.10 139 321 9.8E-69 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 Gene3D G3DSA:1.10.150.130 10 127 4.7E-18 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 76 326 7.9E-102 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 12 327 55.927 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 SUPERFAMILY SSF56349 135 325 7.65E-58 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 SUPERFAMILY SSF47823 11 129 8.24E-25 T 11-10-2018 APT56_22130 bc2325605e93a7e0fcd106069d2194ae 327 Pfam PF00589 Phage integrase family 141 312 1.8E-50 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT56_07490 35882584d35b63497eda12033daba199 565 Pfam PF13632 Glycosyl transferase family group 2 167 386 5.1E-48 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_07490 35882584d35b63497eda12033daba199 565 SUPERFAMILY SSF160246 491 548 1.2E-9 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily APT56_07490 35882584d35b63497eda12033daba199 565 Gene3D G3DSA:3.90.550.10 62 289 4.8E-8 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_07490 35882584d35b63497eda12033daba199 565 SUPERFAMILY SSF53448 73 401 1.08E-10 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 Gene3D G3DSA:3.30.1330.30 1 77 1.3E-21 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 Pfam PF00588 SpoU rRNA Methylase family 97 237 2.3E-39 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 SUPERFAMILY SSF55315 3 77 5.65E-18 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 SUPERFAMILY SSF75217 83 244 3.14E-49 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 4 244 44.257 T 11-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 80 3.0E-16 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 5 243 8.5E-73 T 11-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 Gene3D G3DSA:3.40.1280.10 79 244 4.1E-57 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT56_08755 aa602d98afd4a12424d86ec1db59b1e2 245 SMART SM00967 6 82 2.0E-17 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 APT56_19200 26e885d3d03837787917d1cb766cdbdd 253 Gene3D G3DSA:3.55.50.30 56 165 7.1E-23 T 11-10-2018 APT56_19200 26e885d3d03837787917d1cb766cdbdd 253 SMART SM00965 86 137 5.3E-11 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_18320 93b323fa102e247b2e7cfa6d762c4f0e 368 Pfam PF02615 Malate/L-lactate dehydrogenase 15 354 2.0E-109 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 APT56_18320 93b323fa102e247b2e7cfa6d762c4f0e 368 Gene3D G3DSA:1.10.1530.10 23 360 3.2E-112 T 11-10-2018 APT56_18320 93b323fa102e247b2e7cfa6d762c4f0e 368 SUPERFAMILY SSF89733 12 363 1.96E-98 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 APT56_18320 93b323fa102e247b2e7cfa6d762c4f0e 368 Gene3D G3DSA:3.30.1370.60 75 328 3.2E-112 T 11-10-2018 APT56_22415 606577a94ee778b0f358f75edec7ce37 156 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 13 155 3.4E-51 T 11-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_22415 606577a94ee778b0f358f75edec7ce37 156 Pfam PF06754 Phosphonate metabolism protein PhnG 14 154 3.8E-51 T 11-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 Gene3D G3DSA:1.10.1520.10 2 142 2.9E-45 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 Pfam PF00035 Double-stranded RNA binding motif 153 218 4.3E-9 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 ProSitePatterns PS00517 Ribonuclease III family signature. 35 43 - T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 Pfam PF14622 Ribonuclease-III-like 16 137 4.7E-38 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 SUPERFAMILY SSF69065 2 152 3.49E-48 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 SMART SM00358 153 221 1.5E-13 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 SMART SM00535 18 146 1.5E-52 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 SUPERFAMILY SSF54768 106 225 9.27E-23 T 11-10-2018 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 Gene3D G3DSA:3.30.160.20 151 221 2.9E-15 T 11-10-2018 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 Hamap MF_00104 Ribonuclease 3 [rnc]. 6 217 29.286 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 APT56_06840 2d29a0b58946673ba3c8e868c86408c6 253 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 6 219 1.3E-69 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 APT56_13405 a288e5b76ffb4ccde7dd16d89f0bb2ab 465 SUPERFAMILY SSF51905 4 272 1.39E-17 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13405 a288e5b76ffb4ccde7dd16d89f0bb2ab 465 Gene3D G3DSA:3.50.50.60 1 424 1.4E-111 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_13405 a288e5b76ffb4ccde7dd16d89f0bb2ab 465 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 341 4.2E-119 T 11-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase APT56_19495 79902ccb18837768537d2289979677ab 216 SUPERFAMILY SSF52317 41 212 8.24E-6 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_22900 1fcc77401d58839fd63599a6b333aac7 358 Gene3D G3DSA:3.40.190.10 206 266 4.6E-6 T 11-10-2018 APT56_22900 1fcc77401d58839fd63599a6b333aac7 358 SUPERFAMILY SSF53850 184 342 2.26E-11 T 11-10-2018 APT56_22900 1fcc77401d58839fd63599a6b333aac7 358 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 28 86 8.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22900 1fcc77401d58839fd63599a6b333aac7 358 Pfam PF12727 PBP superfamily domain 147 327 1.7E-49 T 11-10-2018 IPR024370 PBP domain APT56_22900 1fcc77401d58839fd63599a6b333aac7 358 SUPERFAMILY SSF46785 25 142 8.62E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22900 1fcc77401d58839fd63599a6b333aac7 358 Gene3D G3DSA:1.10.10.10 4 119 9.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11565 503f2fa5a943a849ca3779059e7161a8 410 SUPERFAMILY SSF52518 46 407 4.95E-95 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_11565 503f2fa5a943a849ca3779059e7161a8 410 Pfam PF00676 Dehydrogenase E1 component 81 377 7.3E-102 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 APT56_11565 503f2fa5a943a849ca3779059e7161a8 410 Pfam PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal 6 44 2.2E-18 T 11-10-2018 IPR022593 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain KEGG: 00280+1.2.4.4|KEGG: 00640+1.2.4.4|MetaCyc: PWY-5046 APT56_11565 503f2fa5a943a849ca3779059e7161a8 410 Gene3D G3DSA:3.40.50.970 2 408 8.5E-124 T 11-10-2018 APT56_06695 3a1c4e0426b0fd5c93d3ba35326310f7 450 ProSitePatterns PS00217 Sugar transport proteins signature 2. 138 163 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_06695 3a1c4e0426b0fd5c93d3ba35326310f7 450 ProSitePatterns PS00216 Sugar transport proteins signature 1. 315 331 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_06695 3a1c4e0426b0fd5c93d3ba35326310f7 450 Gene3D G3DSA:1.20.1250.20 21 450 5.0E-66 T 11-10-2018 APT56_06695 3a1c4e0426b0fd5c93d3ba35326310f7 450 Pfam PF00083 Sugar (and other) transporter 25 448 2.4E-36 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_06695 3a1c4e0426b0fd5c93d3ba35326310f7 450 SUPERFAMILY SSF103473 21 444 1.24E-64 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 SUPERFAMILY SSF53067 255 502 4.1E-83 T 11-10-2018 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 PIRSF PIRSF000538 4 507 2.1E-177 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 6 502 3.3E-216 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 Gene3D G3DSA:3.30.420.40 5 253 1.0E-106 T 11-10-2018 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 Hamap MF_00186 Glycerol kinase [glpK]. 4 503 57.149 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 SUPERFAMILY SSF53067 6 255 2.59E-94 T 11-10-2018 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 252 4.7E-79 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 Gene3D G3DSA:3.30.420.40 254 506 3.4E-91 T 11-10-2018 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 456 1.6E-62 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 136 148 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT56_02870 ab239a7cd854e85949dbac42ef54a3ab 507 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 368 388 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APT56_19195 d0877e21da01704f1df383378fe7a686 184 Pfam PF08281 Sigma-70, region 4 110 162 9.7E-13 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_19195 d0877e21da01704f1df383378fe7a686 184 SUPERFAMILY SSF88946 9 95 2.86E-10 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_19195 d0877e21da01704f1df383378fe7a686 184 Gene3D G3DSA:1.10.10.10 90 170 4.3E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19195 d0877e21da01704f1df383378fe7a686 184 Gene3D G3DSA:1.10.1740.10 3 80 3.3E-6 T 11-10-2018 APT56_19195 d0877e21da01704f1df383378fe7a686 184 Pfam PF04542 Sigma-70 region 2 18 79 2.5E-7 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_19195 d0877e21da01704f1df383378fe7a686 184 SUPERFAMILY SSF88659 93 168 1.36E-12 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_19195 d0877e21da01704f1df383378fe7a686 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 165 3.7E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_25435 db6f8ac26d4458d7535e8d49a16e5d44 179 Pfam PF05713 Bacterial mobilisation protein (MobC) 124 145 1.0E-5 T 11-10-2018 IPR008687 Bacterial mobilisation APT56_25435 db6f8ac26d4458d7535e8d49a16e5d44 179 SUPERFAMILY SSF47598 64 105 1.14E-5 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 APT56_05565 b441d819fb088b9adb779ed2186501ce 299 Gene3D G3DSA:3.40.50.10330 23 288 3.1E-89 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 APT56_05565 b441d819fb088b9adb779ed2186501ce 299 Hamap MF_00361 NAD kinase [nadK]. 4 288 32.514 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 APT56_05565 b441d819fb088b9adb779ed2186501ce 299 SUPERFAMILY SSF111331 5 290 2.62E-88 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily APT56_05565 b441d819fb088b9adb779ed2186501ce 299 Pfam PF01513 ATP-NAD kinase 52 272 1.4E-56 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 APT56_05565 b441d819fb088b9adb779ed2186501ce 299 Gene3D G3DSA:2.60.200.30 126 265 3.1E-89 T 11-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 APT56_26480 4d4f534b400cde96ea8f6ca900fd2156 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 8.7E-24 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 APT56_26480 4d4f534b400cde96ea8f6ca900fd2156 105 SUPERFAMILY SSF103481 4 102 1.57E-19 T 11-10-2018 APT56_26480 4d4f534b400cde96ea8f6ca900fd2156 105 Gene3D G3DSA:1.10.3730.20 1 105 2.0E-30 T 11-10-2018 APT56_16075 3085d1bd620aac6510bdcaf15f8db8e9 218 Gene3D G3DSA:3.30.1330.60 41 211 3.8E-38 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_16075 3085d1bd620aac6510bdcaf15f8db8e9 218 SUPERFAMILY SSF103088 69 203 1.7E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_16075 3085d1bd620aac6510bdcaf15f8db8e9 218 Pfam PF00691 OmpA family 94 198 1.2E-19 T 11-10-2018 IPR006665 OmpA-like domain APT56_25700 461142e7702216bd7c15e545bf95466f 481 SUPERFAMILY SSF103473 215 480 1.29E-22 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_25700 461142e7702216bd7c15e545bf95466f 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 118 138 3.7E-6 T 11-10-2018 APT56_25700 461142e7702216bd7c15e545bf95466f 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 148 172 3.7E-6 T 11-10-2018 APT56_25700 461142e7702216bd7c15e545bf95466f 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 27 51 3.7E-6 T 11-10-2018 APT56_25700 461142e7702216bd7c15e545bf95466f 481 Gene3D G3DSA:1.20.1250.20 275 481 3.0E-15 T 11-10-2018 APT56_25700 461142e7702216bd7c15e545bf95466f 481 Pfam PF07690 Major Facilitator Superfamily 29 428 1.2E-41 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_25700 461142e7702216bd7c15e545bf95466f 481 SUPERFAMILY SSF103473 22 207 3.53E-40 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_25700 461142e7702216bd7c15e545bf95466f 481 Gene3D G3DSA:1.20.1720.10 25 214 3.6E-44 T 11-10-2018 APT56_21700 cb25b09d230f76fe003157ea9ab7178e 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 247 1.0E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_21700 cb25b09d230f76fe003157ea9ab7178e 263 Gene3D G3DSA:1.10.3720.10 1 261 1.3E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21700 cb25b09d230f76fe003157ea9ab7178e 263 SUPERFAMILY SSF161098 3 249 7.06E-47 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 1.0E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 1.0E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 1.0E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 8 33 1.0E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 1.0E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 Pfam PF02203 Tar ligand binding domain homologue 5 168 1.1E-13 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 Gene3D G3DSA:1.10.287.950 216 518 4.5E-87 T 11-10-2018 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 SMART SM00304 216 268 5.2E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 SMART SM00283 269 516 2.0E-86 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 SUPERFAMILY SSF47170 35 177 2.14E-7 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 8.4E-49 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_01690 c5cc264183b395cca17f9457ad60bcda 539 SUPERFAMILY SSF58104 236 525 5.62E-71 T 11-10-2018 APT56_15170 9d085ac9087388a32362bf95546dd3fd 274 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 69 269 3.0E-56 T 11-10-2018 APT56_15170 9d085ac9087388a32362bf95546dd3fd 274 Gene3D G3DSA:3.40.50.150 61 273 7.4E-69 T 11-10-2018 APT56_15170 9d085ac9087388a32362bf95546dd3fd 274 SUPERFAMILY SSF53335 66 271 5.43E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_15170 9d085ac9087388a32362bf95546dd3fd 274 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 195 210 - T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 APT56_15170 9d085ac9087388a32362bf95546dd3fd 274 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 65 271 8.0E-59 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 APT56_15170 9d085ac9087388a32362bf95546dd3fd 274 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 64 274 34.609 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 APT56_03930 7c973fbff558fe39f3baff360adb2455 500 SUPERFAMILY SSF53850 210 489 6.6E-57 T 11-10-2018 APT56_03930 7c973fbff558fe39f3baff360adb2455 500 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 210 488 6.4E-60 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family APT56_03930 7c973fbff558fe39f3baff360adb2455 500 Gene3D G3DSA:3.40.190.10 293 431 2.3E-67 T 11-10-2018 APT56_03930 7c973fbff558fe39f3baff360adb2455 500 Pfam PF16868 NMT1-like family 216 488 1.0E-54 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family APT56_03930 7c973fbff558fe39f3baff360adb2455 500 Gene3D G3DSA:3.40.190.10 211 488 2.3E-67 T 11-10-2018 APT56_05585 dbd363b68990e17e839500378042982a 185 Pfam PF01025 GrpE 24 181 5.6E-47 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 PRINTS PR00773 GrpE protein signature 135 150 4.1E-25 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 PRINTS PR00773 GrpE protein signature 54 70 4.1E-25 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 PRINTS PR00773 GrpE protein signature 82 97 4.1E-25 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 PRINTS PR00773 GrpE protein signature 161 180 4.1E-25 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 Hamap MF_01151 Protein GrpE [grpE]. 5 182 19.336 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 Gene3D G3DSA:2.30.22.10 127 182 1.8E-18 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 ProSitePatterns PS01071 grpE protein signature. 138 180 - T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 SUPERFAMILY SSF51064 131 183 5.89E-15 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 Gene3D G3DSA:3.90.20.20 23 125 9.6E-25 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 APT56_05585 dbd363b68990e17e839500378042982a 185 SUPERFAMILY SSF58014 31 124 2.48E-23 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 APT56_04880 0d2d7eecb2af123357dda447e863e4ff 326 Gene3D G3DSA:1.20.1530.20 186 326 4.1E-6 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APT56_04880 0d2d7eecb2af123357dda447e863e4ff 326 Pfam PF03547 Membrane transport protein 178 320 3.5E-11 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APT56_27740 9931a5c3e661e33993935493d5de31be 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.295 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APT56_27740 9931a5c3e661e33993935493d5de31be 122 SUPERFAMILY SSF50193 1 122 9.55E-51 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_27740 9931a5c3e661e33993935493d5de31be 122 SMART SM01374 1 122 4.8E-83 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APT56_27740 9931a5c3e661e33993935493d5de31be 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27740 9931a5c3e661e33993935493d5de31be 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 8.3E-54 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APT56_27740 9931a5c3e661e33993935493d5de31be 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 9.3E-57 T 11-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 APT56_27740 9931a5c3e661e33993935493d5de31be 122 Gene3D G3DSA:2.40.150.20 1 122 7.9E-53 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 SMART SM00100 24 145 2.6E-7 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 Gene3D G3DSA:1.10.10.10 159 240 3.3E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 Gene3D G3DSA:2.60.120.10 37 157 1.7E-32 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 SUPERFAMILY SSF46785 161 239 5.24E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 Pfam PF00027 Cyclic nucleotide-binding domain 44 126 4.5E-11 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 203 218 1.1E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 187 203 1.1E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 SUPERFAMILY SSF51206 17 156 8.38E-24 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 ProSitePatterns PS00042 Crp-type HTH domain signature. 189 212 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 SMART SM00419 181 229 5.7E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_18500 5ed589ca402f025d2020cd8f99200cbd 242 Pfam PF13545 Crp-like helix-turn-helix domain 162 236 4.6E-20 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 PIRSF PIRSF006205 4 398 1.3E-143 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 SUPERFAMILY SSF51735 5 153 1.42E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 135 3.0E-39 T 11-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 Gene3D G3DSA:1.10.1740.10 313 397 7.2E-27 T 11-10-2018 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 392 5.4E-141 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 7 396 44.92 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 Pfam PF13288 DXP reductoisomerase C-terminal domain 272 391 3.7E-39 T 11-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 SUPERFAMILY SSF55347 129 275 3.6E-62 T 11-10-2018 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 SUPERFAMILY SSF69055 303 395 8.63E-28 T 11-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 149 240 2.8E-38 T 11-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APT56_12270 352e4b8648b52e2f481aaad8e95433b9 399 Gene3D G3DSA:3.40.50.720 2 153 2.3E-48 T 11-10-2018 APT56_18495 ca180fd1a9fabadf0c76dce15042b01a 143 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 130 8.5E-16 T 11-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like APT56_18495 ca180fd1a9fabadf0c76dce15042b01a 143 SUPERFAMILY SSF110857 2 132 1.96E-20 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily APT56_18495 ca180fd1a9fabadf0c76dce15042b01a 143 Gene3D G3DSA:3.10.490.10 1 121 1.0E-15 T 11-10-2018 APT56_19990 e989b9d673796412cd2a477c9a9c67e8 249 Gene3D G3DSA:3.40.50.12740 3 226 1.7E-20 T 11-10-2018 APT56_19990 e989b9d673796412cd2a477c9a9c67e8 249 SUPERFAMILY SSF46894 161 225 3.23E-15 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_19990 e989b9d673796412cd2a477c9a9c67e8 249 SUPERFAMILY SSF52172 2 128 9.96E-6 T 11-10-2018 IPR011006 CheY-like superfamily APT56_19990 e989b9d673796412cd2a477c9a9c67e8 249 SMART SM00421 164 221 5.8E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19990 e989b9d673796412cd2a477c9a9c67e8 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 181 4.5E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19990 e989b9d673796412cd2a477c9a9c67e8 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 197 209 4.5E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19990 e989b9d673796412cd2a477c9a9c67e8 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 197 4.5E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_19990 e989b9d673796412cd2a477c9a9c67e8 249 Pfam PF00196 Bacterial regulatory proteins, luxR family 167 218 2.6E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_14435 f067148a0516afb803a1a3a457cfae36 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 226 3.9E-14 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_14435 f067148a0516afb803a1a3a457cfae36 239 Pfam PF00072 Response regulator receiver domain 3 112 9.8E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_14435 f067148a0516afb803a1a3a457cfae36 239 SUPERFAMILY SSF52172 2 124 9.53E-27 T 11-10-2018 IPR011006 CheY-like superfamily APT56_14435 f067148a0516afb803a1a3a457cfae36 239 SUPERFAMILY SSF46894 137 227 9.07E-15 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_14435 f067148a0516afb803a1a3a457cfae36 239 Gene3D G3DSA:3.40.50.2300 1 129 2.3E-21 T 11-10-2018 APT56_14435 f067148a0516afb803a1a3a457cfae36 239 SMART SM00862 151 227 2.4E-9 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_14435 f067148a0516afb803a1a3a457cfae36 239 Gene3D G3DSA:1.10.10.10 133 234 5.8E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14435 f067148a0516afb803a1a3a457cfae36 239 SMART SM00448 1 114 7.5E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_23000 beb38bd4da423edbe6b6ebb4c7da93e3 441 Pfam PF07995 Glucose / Sorbosone dehydrogenase 174 351 2.3E-8 T 11-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase APT56_23000 beb38bd4da423edbe6b6ebb4c7da93e3 441 Gene3D G3DSA:2.120.10.30 68 438 2.4E-12 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_23000 beb38bd4da423edbe6b6ebb4c7da93e3 441 SUPERFAMILY SSF50952 64 436 2.48E-37 T 11-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 APT56_12105 9414d199f2d6f52f4b95fe580cb7d456 491 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 395 404 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_12105 9414d199f2d6f52f4b95fe580cb7d456 491 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 28 482 2.0E-175 T 11-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_12105 9414d199f2d6f52f4b95fe580cb7d456 491 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 189 404 9.5E-71 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_12105 9414d199f2d6f52f4b95fe580cb7d456 491 Gene3D G3DSA:3.40.50.12240 35 486 1.0E-153 T 11-10-2018 APT56_12105 9414d199f2d6f52f4b95fe580cb7d456 491 SUPERFAMILY SSF52540 136 410 1.55E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12105 9414d199f2d6f52f4b95fe580cb7d456 491 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 42 481 1.8E-193 T 11-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_12105 9414d199f2d6f52f4b95fe580cb7d456 491 SMART SM00382 201 388 9.6E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23790 99c9f6c22d903fca9f79ea5b460d053c 116 Pfam PF08883 Dopa 4,5-dioxygenase family 11 111 1.6E-32 T 11-10-2018 IPR014980 Dopa 4,5-dioxygenase APT56_23790 99c9f6c22d903fca9f79ea5b460d053c 116 Gene3D G3DSA:3.30.70.1240 2 115 2.7E-38 T 11-10-2018 IPR023389 DOPA-like superfamily APT56_23790 99c9f6c22d903fca9f79ea5b460d053c 116 SUPERFAMILY SSF143410 6 113 8.63E-42 T 11-10-2018 IPR023389 DOPA-like superfamily APT56_23790 99c9f6c22d903fca9f79ea5b460d053c 116 PIRSF PIRSF028139 4 116 2.5E-37 T 11-10-2018 IPR014980 Dopa 4,5-dioxygenase APT56_04045 ce3a404c2ce179f025be46d182fa043d 114 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 5 111 1.2E-30 T 11-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 APT56_04045 ce3a404c2ce179f025be46d182fa043d 114 Pfam PF04273 Putative phosphatase (DUF442) 7 113 2.8E-33 T 11-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 APT56_04045 ce3a404c2ce179f025be46d182fa043d 114 Gene3D G3DSA:3.90.190.10 2 114 7.2E-32 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like APT56_06155 03e57e5a6e066c10cf060b43b3ef059d 232 SMART SM00448 1 112 5.2E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_06155 03e57e5a6e066c10cf060b43b3ef059d 232 SMART SM00862 145 218 5.9E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_06155 03e57e5a6e066c10cf060b43b3ef059d 232 Gene3D G3DSA:3.40.50.2300 1 121 3.9E-37 T 11-10-2018 APT56_06155 03e57e5a6e066c10cf060b43b3ef059d 232 Gene3D G3DSA:1.10.10.10 123 226 1.5E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06155 03e57e5a6e066c10cf060b43b3ef059d 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 3.9E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_06155 03e57e5a6e066c10cf060b43b3ef059d 232 SUPERFAMILY SSF52172 1 166 8.68E-39 T 11-10-2018 IPR011006 CheY-like superfamily APT56_06155 03e57e5a6e066c10cf060b43b3ef059d 232 Pfam PF00072 Response regulator receiver domain 3 111 8.4E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 SUPERFAMILY SSF53335 65 251 4.92E-43 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 SUPERFAMILY SSF48452 332 414 1.47E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 SMART SM00138 3 260 8.0E-38 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 Gene3D G3DSA:1.25.40.10 313 422 3.7E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 Pfam PF01739 CheR methyltransferase, SAM binding domain 66 241 7.3E-38 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 PRINTS PR00996 Glutamate methyltransferase family signature 58 70 3.0E-20 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 PRINTS PR00996 Glutamate methyltransferase family signature 200 214 3.0E-20 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 PRINTS PR00996 Glutamate methyltransferase family signature 131 147 3.0E-20 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 PRINTS PR00996 Glutamate methyltransferase family signature 219 242 3.0E-20 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 PRINTS PR00996 Glutamate methyltransferase family signature 98 118 3.0E-20 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 SMART SM00028 357 390 7.4E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 Pfam PF13181 Tetratricopeptide repeat 357 390 1.3E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_16475 267fd4a0413811ec36ed97bb899576cb 425 Gene3D G3DSA:3.40.50.150 64 251 2.1E-45 T 11-10-2018 APT56_18685 46a79370a4923085786aa77812d40440 491 Gene3D G3DSA:3.40.640.10 65 318 9.4E-46 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_18685 46a79370a4923085786aa77812d40440 491 Gene3D G3DSA:3.90.1150.10 319 469 2.8E-18 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_18685 46a79370a4923085786aa77812d40440 491 Pfam PF00266 Aminotransferase class-V 51 410 6.6E-44 T 11-10-2018 IPR000192 Aminotransferase class V domain APT56_18685 46a79370a4923085786aa77812d40440 491 SUPERFAMILY SSF53383 43 462 2.36E-73 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_03095 d7f944a5554964e572c73abfa4f2a6b8 328 Gene3D G3DSA:1.10.10.60 224 328 5.3E-31 T 11-10-2018 APT56_03095 d7f944a5554964e572c73abfa4f2a6b8 328 SMART SM00342 240 324 4.5E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_03095 d7f944a5554964e572c73abfa4f2a6b8 328 Pfam PF14525 AraC-binding-like domain 27 205 6.7E-47 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like APT56_03095 d7f944a5554964e572c73abfa4f2a6b8 328 SUPERFAMILY SSF46689 224 271 2.45E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_03095 d7f944a5554964e572c73abfa4f2a6b8 328 Pfam PF12833 Helix-turn-helix domain 246 325 4.5E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_03095 d7f944a5554964e572c73abfa4f2a6b8 328 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 277 320 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_22470 db74ee4d22a9c1c18bd8fcc96b0da5bb 280 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_22470 db74ee4d22a9c1c18bd8fcc96b0da5bb 280 SUPERFAMILY SSF52540 3 241 2.78E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22470 db74ee4d22a9c1c18bd8fcc96b0da5bb 280 Gene3D G3DSA:3.40.50.300 1 249 5.4E-62 T 11-10-2018 APT56_22470 db74ee4d22a9c1c18bd8fcc96b0da5bb 280 Pfam PF00005 ABC transporter 21 181 6.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_22470 db74ee4d22a9c1c18bd8fcc96b0da5bb 280 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 5 250 1.3E-84 T 11-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 APT56_22470 db74ee4d22a9c1c18bd8fcc96b0da5bb 280 SMART SM00382 30 259 1.7E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 SUPERFAMILY SSF56655 3 333 3.66E-117 T 11-10-2018 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 Gene3D G3DSA:3.30.540.10 2 197 2.8E-68 T 11-10-2018 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 Gene3D G3DSA:3.40.190.80 198 335 4.9E-54 T 11-10-2018 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 PIRSF PIRSF500210 1 337 1.7E-126 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 196 3.8E-61 T 11-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 335 46.931 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 PIRSF PIRSF000904 1 338 9.8E-124 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 207 234 1.6E-72 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 66 92 1.6E-72 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 181 204 1.6E-72 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 150 173 1.6E-72 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 29 56 1.6E-72 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_08400 57e1d74aba9f0bf7696170ade59d140d 339 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 309 334 1.6E-72 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APT56_12620 b1a2dbc8f331955ef79ea4d4e4e0a3fc 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 436 1.4E-80 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_12620 b1a2dbc8f331955ef79ea4d4e4e0a3fc 528 Gene3D G3DSA:3.10.105.10 279 498 3.2E-55 T 11-10-2018 APT56_12620 b1a2dbc8f331955ef79ea4d4e4e0a3fc 528 SUPERFAMILY SSF53850 30 524 2.04E-123 T 11-10-2018 APT56_12620 b1a2dbc8f331955ef79ea4d4e4e0a3fc 528 PIRSF PIRSF002741 1 528 1.8E-117 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_12620 b1a2dbc8f331955ef79ea4d4e4e0a3fc 528 Gene3D G3DSA:3.40.190.10 5 275 5.6E-60 T 11-10-2018 APT56_15975 73e0cda55569a4ce20d0046e6860ca5c 127 SUPERFAMILY SSF46626 1 80 8.51E-12 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_15975 73e0cda55569a4ce20d0046e6860ca5c 127 Gene3D G3DSA:1.10.760.10 2 122 2.6E-7 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_15975 73e0cda55569a4ce20d0046e6860ca5c 127 Pfam PF00034 Cytochrome c 28 68 4.4E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_19965 500ee456c6140c617cd91ac440fe3a98 378 Pfam PF00534 Glycosyl transferases group 1 199 350 1.9E-27 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_19965 500ee456c6140c617cd91ac440fe3a98 378 Pfam PF13439 Glycosyltransferase Family 4 13 179 1.2E-19 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_19965 500ee456c6140c617cd91ac440fe3a98 378 Gene3D G3DSA:3.40.50.2000 201 354 7.2E-34 T 11-10-2018 APT56_19965 500ee456c6140c617cd91ac440fe3a98 378 Gene3D G3DSA:3.40.50.2000 4 200 2.0E-20 T 11-10-2018 APT56_19965 500ee456c6140c617cd91ac440fe3a98 378 SUPERFAMILY SSF53756 4 370 9.81E-67 T 11-10-2018 APT56_27220 6bc1c60426bf5877acbe43db8e4e28a2 167 Gene3D G3DSA:1.10.10.10 10 96 1.9E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27220 6bc1c60426bf5877acbe43db8e4e28a2 167 Gene3D G3DSA:3.30.1490.190 100 167 5.8E-14 T 11-10-2018 APT56_27220 6bc1c60426bf5877acbe43db8e4e28a2 167 Pfam PF01475 Ferric uptake regulator family 27 145 2.6E-16 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 APT56_27220 6bc1c60426bf5877acbe43db8e4e28a2 167 SUPERFAMILY SSF46785 20 150 8.44E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05460 9785eab659f03c1c9039dcf9db1aeb80 252 SUPERFAMILY SSF55729 3 232 1.01E-85 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_05460 9785eab659f03c1c9039dcf9db1aeb80 252 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 36 212 8.1E-70 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 APT56_05460 9785eab659f03c1c9039dcf9db1aeb80 252 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 38 226 1.3E-54 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 APT56_05460 9785eab659f03c1c9039dcf9db1aeb80 252 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 252 96.104 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 APT56_05460 9785eab659f03c1c9039dcf9db1aeb80 252 Gene3D G3DSA:2.30.210.20 4 60 2.5E-23 T 11-10-2018 APT56_05460 9785eab659f03c1c9039dcf9db1aeb80 252 Gene3D G3DSA:3.40.630.70 61 239 1.2E-60 T 11-10-2018 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 Pfam PF01266 FAD dependent oxidoreductase 27 386 7.6E-57 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 Gene3D G3DSA:3.50.50.60 27 394 3.3E-132 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 SUPERFAMILY SSF51905 26 352 1.4E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 408 513 1.3E-15 T 11-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 380 390 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 Gene3D G3DSA:1.10.8.870 424 530 2.6E-18 T 11-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 344 350 3.5E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 55 67 3.5E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 26 38 3.5E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 100 112 3.5E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 39 49 3.5E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 375 387 3.5E-29 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APT56_15450 21417f080b00bd8fd3e67b85d1fbcffc 532 Gene3D G3DSA:3.30.9.10 104 351 3.3E-132 T 11-10-2018 APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 SUPERFAMILY SSF54106 325 370 2.35E-6 T 11-10-2018 APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 SUPERFAMILY SSF54106 422 466 1.01E-10 T 11-10-2018 APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 Pfam PF01464 Transglycosylase SLT domain 107 207 1.2E-23 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 Pfam PF01476 LysM domain 330 370 2.5E-6 T 11-10-2018 IPR018392 LysM domain APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 Pfam PF01476 LysM domain 424 466 5.6E-13 T 11-10-2018 IPR018392 LysM domain APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 SMART SM00257 423 466 8.3E-16 T 11-10-2018 IPR018392 LysM domain APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 SMART SM00257 326 370 0.0032 T 11-10-2018 IPR018392 LysM domain APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 SUPERFAMILY SSF53955 96 243 6.84E-41 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 Gene3D G3DSA:1.10.530.10 94 243 2.8E-31 T 11-10-2018 APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 Gene3D G3DSA:3.10.350.10 318 374 2.7E-8 T 11-10-2018 IPR036779 LysM domain superfamily APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 Gene3D G3DSA:3.10.350.10 421 466 9.0E-16 T 11-10-2018 IPR036779 LysM domain superfamily APT56_03880 30f75ab85c974cb749a56eac77f024b4 472 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 117 145 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 APT56_23290 acf4b0f774e8809c7dd5a6b8cb485638 144 Pfam PF11162 Protein of unknown function (DUF2946) 21 141 6.0E-10 T 11-10-2018 IPR021333 Protein of unknown function DUF2946 APT56_07035 4d8e7a6e8dfa93750e6044ad66f758a7 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 74 9.7E-13 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_07035 4d8e7a6e8dfa93750e6044ad66f758a7 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 298 3.7E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_07035 4d8e7a6e8dfa93750e6044ad66f758a7 300 Gene3D G3DSA:1.10.3720.10 87 294 1.9E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07035 4d8e7a6e8dfa93750e6044ad66f758a7 300 SUPERFAMILY SSF161098 92 282 7.33E-29 T 11-10-2018 IPR035906 MetI-like superfamily APT56_06450 dee1d722c66ab98bd2f39164e64a8699 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 333 352 9.4E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06450 dee1d722c66ab98bd2f39164e64a8699 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 385 411 9.4E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06450 dee1d722c66ab98bd2f39164e64a8699 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 145 164 9.4E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06450 dee1d722c66ab98bd2f39164e64a8699 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 245 269 9.4E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06450 dee1d722c66ab98bd2f39164e64a8699 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 175 199 9.4E-49 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06450 dee1d722c66ab98bd2f39164e64a8699 500 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 71 133 2.3E-5 T 11-10-2018 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06450 dee1d722c66ab98bd2f39164e64a8699 500 Pfam PF00361 Proton-conducting membrane transporter 141 425 9.5E-78 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06450 dee1d722c66ab98bd2f39164e64a8699 500 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 14 495 1.1E-184 T 11-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_02065 1f15f707a855e6a5293e047000c1a723 267 Pfam PF10411 Disulfide bond isomerase protein N-terminus 65 117 1.6E-11 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal APT56_02065 1f15f707a855e6a5293e047000c1a723 267 SUPERFAMILY SSF52833 118 267 3.0E-32 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_02065 1f15f707a855e6a5293e047000c1a723 267 Pfam PF13098 Thioredoxin-like domain 146 266 2.4E-28 T 11-10-2018 IPR012336 Thioredoxin-like fold APT56_02065 1f15f707a855e6a5293e047000c1a723 267 Gene3D G3DSA:3.40.30.10 114 267 3.9E-34 T 11-10-2018 APT56_02065 1f15f707a855e6a5293e047000c1a723 267 ProSitePatterns PS00194 Thioredoxin family active site. 153 171 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APT56_02065 1f15f707a855e6a5293e047000c1a723 267 SUPERFAMILY SSF54423 64 114 8.04E-5 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 APT56_03030 5d965e7cfc8ffa6e168d881c10ffb645 234 SUPERFAMILY SSF52540 2 231 8.21E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03030 5d965e7cfc8ffa6e168d881c10ffb645 234 SMART SM00382 26 211 1.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_03030 5d965e7cfc8ffa6e168d881c10ffb645 234 Pfam PF00005 ABC transporter 19 162 2.7E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_03030 5d965e7cfc8ffa6e168d881c10ffb645 234 Gene3D G3DSA:3.40.50.300 1 234 9.5E-58 T 11-10-2018 APT56_03030 5d965e7cfc8ffa6e168d881c10ffb645 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_18125 ec2321c773f27b6fc917fd4af13acfa5 207 Gene3D G3DSA:1.10.357.10 19 204 7.2E-52 T 11-10-2018 APT56_18125 ec2321c773f27b6fc917fd4af13acfa5 207 SUPERFAMILY SSF48498 95 198 5.93E-13 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_18125 ec2321c773f27b6fc917fd4af13acfa5 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 70 6.6E-14 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_18125 ec2321c773f27b6fc917fd4af13acfa5 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 1.6E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_18125 ec2321c773f27b6fc917fd4af13acfa5 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 1.6E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_18125 ec2321c773f27b6fc917fd4af13acfa5 207 SUPERFAMILY SSF46689 21 89 6.16E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_20270 81588e3662bdb0a5068e248dfa4171b1 257 Gene3D G3DSA:3.60.21.10 10 221 1.4E-10 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_20270 81588e3662bdb0a5068e248dfa4171b1 257 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 256 92.985 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 APT56_20270 81588e3662bdb0a5068e248dfa4171b1 257 Pfam PF00149 Calcineurin-like phosphoesterase 9 208 1.6E-6 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_20270 81588e3662bdb0a5068e248dfa4171b1 257 SUPERFAMILY SSF56300 10 247 3.8E-23 T 11-10-2018 APT56_20270 81588e3662bdb0a5068e248dfa4171b1 257 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 13 233 2.1E-64 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 59 1.1E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 SUPERFAMILY SSF46785 2 84 1.51E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 Pfam PF03466 LysR substrate binding domain 90 293 6.6E-44 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 Gene3D G3DSA:1.10.10.10 1 87 1.7E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 Gene3D G3DSA:3.40.190.290 92 300 8.7E-44 T 11-10-2018 APT56_11135 d5727b9ca14292dbbd6e4005460434fd 314 SUPERFAMILY SSF53850 92 297 4.09E-42 T 11-10-2018 APT56_19005 494254fd214c1240d3c68bec0e8ded54 278 Gene3D G3DSA:3.40.50.1820 51 257 1.7E-33 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_19005 494254fd214c1240d3c68bec0e8ded54 278 SUPERFAMILY SSF53474 24 255 4.82E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_19005 494254fd214c1240d3c68bec0e8ded54 278 Pfam PF12146 Serine aminopeptidase, S33 68 158 6.0E-9 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 APT56_24635 af8f9f20a574f921e265898e876bb067 527 Pfam PF01019 Gamma-glutamyltranspeptidase 15 522 8.8E-118 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 Gene3D G3DSA:3.60.20.40 350 527 1.1E-47 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 97 115 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 372 390 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 214 230 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 22 47 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 420 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 430 447 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 115 134 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 244 263 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 350 368 2.3E-55 T 11-10-2018 APT56_24635 af8f9f20a574f921e265898e876bb067 527 SUPERFAMILY SSF56235 1 526 5.4E-131 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_24635 af8f9f20a574f921e265898e876bb067 527 Gene3D G3DSA:1.10.246.130 230 342 2.6E-27 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 9.6E-36 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 138 147 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 428 448 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 8.4E-42 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PIRSF PIRSF000350 2 460 3.1E-59 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 Gene3D G3DSA:3.50.50.60 7 329 3.9E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 SUPERFAMILY SSF55424 346 460 1.43E-21 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 Gene3D G3DSA:3.30.390.30 346 464 4.3E-39 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 SUPERFAMILY SSF51905 1 361 1.08E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 135 153 6.9E-17 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 6.9E-17 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 6.9E-17 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 6.9E-17 T 11-10-2018 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 Gene3D G3DSA:3.50.50.60 147 268 3.9E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 453 1.5E-13 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APT56_15120 1aac67d8b92bceda7c5d685c64941e27 478 Gene3D G3DSA:1.10.287.990 37 107 3.9E-95 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APT56_18795 bb28f675a36f5ebfbd1debaa8624f51d 462 SUPERFAMILY SSF53187 48 455 1.86E-84 T 11-10-2018 APT56_18795 bb28f675a36f5ebfbd1debaa8624f51d 462 Pfam PF07687 Peptidase dimerisation domain 250 346 3.2E-12 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_18795 bb28f675a36f5ebfbd1debaa8624f51d 462 PIRSF PIRSF005962 44 459 4.3E-121 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_18795 bb28f675a36f5ebfbd1debaa8624f51d 462 SUPERFAMILY SSF55031 249 356 1.57E-29 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_18795 bb28f675a36f5ebfbd1debaa8624f51d 462 Gene3D G3DSA:3.40.630.10 60 439 1.8E-140 T 11-10-2018 APT56_18795 bb28f675a36f5ebfbd1debaa8624f51d 462 Pfam PF01546 Peptidase family M20/M25/M40 118 450 3.5E-32 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_18795 bb28f675a36f5ebfbd1debaa8624f51d 462 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 60 441 4.5E-107 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_18795 bb28f675a36f5ebfbd1debaa8624f51d 462 Gene3D G3DSA:3.30.70.360 246 361 1.8E-140 T 11-10-2018 APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 SUPERFAMILY SSF52540 4 254 2.66E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 ProSitePatterns PS00211 ABC transporters family signature. 421 435 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 SUPERFAMILY SSF52540 273 520 2.17E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 SMART SM00382 307 498 1.4E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 SMART SM00382 31 233 4.0E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 500 532 1.5E-4 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 265 2.6E-6 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 Pfam PF00005 ABC transporter 298 448 1.4E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 Gene3D G3DSA:3.40.50.300 1 270 3.4E-83 T 11-10-2018 APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 Gene3D G3DSA:3.40.50.300 271 549 1.1E-87 T 11-10-2018 APT56_06250 dbcd61e13d4c07056a8baaddfbd82503 551 Pfam PF00005 ABC transporter 23 181 1.7E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13795 d0e8a3809f4ee60d661857cab8f5104e 452 Pfam PF10996 Beta-Casp domain 246 365 1.4E-24 T 11-10-2018 IPR022712 Beta-Casp domain APT56_13795 d0e8a3809f4ee60d661857cab8f5104e 452 SMART SM00849 12 213 3.4E-10 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_13795 d0e8a3809f4ee60d661857cab8f5104e 452 Gene3D G3DSA:3.60.15.10 5 427 1.9E-136 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_13795 d0e8a3809f4ee60d661857cab8f5104e 452 SUPERFAMILY SSF56281 2 451 7.96E-129 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_13795 d0e8a3809f4ee60d661857cab8f5104e 452 Pfam PF00753 Metallo-beta-lactamase superfamily 17 203 1.1E-16 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_13795 d0e8a3809f4ee60d661857cab8f5104e 452 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 379 442 2.9E-16 T 11-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain APT56_13795 d0e8a3809f4ee60d661857cab8f5104e 452 SMART SM01027 246 366 9.8E-47 T 11-10-2018 IPR022712 Beta-Casp domain APT56_13795 d0e8a3809f4ee60d661857cab8f5104e 452 Gene3D G3DSA:3.40.50.10890 214 392 1.9E-136 T 11-10-2018 APT56_20955 fa793b4277907cf5daf4308fb24c1797 316 SUPERFAMILY SSF53474 27 308 1.05E-27 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_20955 fa793b4277907cf5daf4308fb24c1797 316 Gene3D G3DSA:3.40.50.1820 19 309 8.6E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_20955 fa793b4277907cf5daf4308fb24c1797 316 Pfam PF00326 Prolyl oligopeptidase family 221 308 4.2E-8 T 11-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 SUPERFAMILY SSF46785 18 95 5.22E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 6.9E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 6.9E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 Pfam PF00155 Aminotransferase class I and II 150 438 1.3E-23 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 SMART SM00345 25 83 1.6E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 SUPERFAMILY SSF53383 123 495 1.12E-79 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 Gene3D G3DSA:3.40.640.10 128 490 1.2E-110 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 Gene3D G3DSA:1.10.10.10 19 127 6.8E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10800 7adee792d69bfcb964d6a35e95a4b23b 500 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 83 5.5E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11640 f1216a4d2d34a9cece623bb8cec13204 175 Gene3D G3DSA:3.40.30.10 10 139 2.8E-18 T 11-10-2018 APT56_11640 f1216a4d2d34a9cece623bb8cec13204 175 SUPERFAMILY SSF52833 29 129 2.81E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_11640 f1216a4d2d34a9cece623bb8cec13204 175 Pfam PF00578 AhpC/TSA family 33 113 6.0E-12 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_21220 cb963b2618afc2057980f4cfd2c0b622 193 Gene3D G3DSA:3.30.160.670 11 180 1.8E-41 T 11-10-2018 APT56_21220 cb963b2618afc2057980f4cfd2c0b622 193 Pfam PF13590 Domain of unknown function (DUF4136) 21 177 2.4E-33 T 11-10-2018 IPR025411 Domain of unknown function DUF4136 APT56_22560 392af8da3ea513edac7276541c59dbad 133 SUPERFAMILY SSF54593 4 131 2.02E-19 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_22560 392af8da3ea513edac7276541c59dbad 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 126 1.6E-5 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_22560 392af8da3ea513edac7276541c59dbad 133 Gene3D G3DSA:3.10.180.10 1 132 6.3E-34 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_18635 0bfb301d300e1edbaf9239d30e790e22 356 SUPERFAMILY SSF102198 100 355 3.01E-10 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_18635 0bfb301d300e1edbaf9239d30e790e22 356 Gene3D G3DSA:3.50.30.50 96 356 7.4E-11 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_18635 0bfb301d300e1edbaf9239d30e790e22 356 Pfam PF04199 Putative cyclase 94 279 2.0E-13 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_18980 fc58ff635cb48261e5a7366ba6d9af6f 256 Gene3D G3DSA:1.10.10.60 156 255 5.7E-19 T 11-10-2018 APT56_18980 fc58ff635cb48261e5a7366ba6d9af6f 256 Pfam PF12833 Helix-turn-helix domain 176 252 3.5E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_18980 fc58ff635cb48261e5a7366ba6d9af6f 256 Pfam PF02311 AraC-like ligand binding domain 24 133 2.5E-5 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_18980 fc58ff635cb48261e5a7366ba6d9af6f 256 SUPERFAMILY SSF51182 12 194 4.0E-16 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_18980 fc58ff635cb48261e5a7366ba6d9af6f 256 SUPERFAMILY SSF46689 210 253 1.21E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18980 fc58ff635cb48261e5a7366ba6d9af6f 256 Gene3D G3DSA:2.60.120.10 13 93 1.2E-7 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_18980 fc58ff635cb48261e5a7366ba6d9af6f 256 SMART SM00342 170 252 4.7E-15 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_18980 fc58ff635cb48261e5a7366ba6d9af6f 256 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 205 248 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_03325 4a6b4e08aac11b1bbba5c0aa5176eeb3 79 Pfam PF00550 Phosphopantetheine attachment site 22 74 1.8E-8 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APT56_03325 4a6b4e08aac11b1bbba5c0aa5176eeb3 79 SUPERFAMILY SSF47336 6 78 9.29E-11 T 11-10-2018 IPR036736 ACP-like superfamily APT56_03325 4a6b4e08aac11b1bbba5c0aa5176eeb3 79 Gene3D G3DSA:1.10.1200.10 3 78 7.6E-15 T 11-10-2018 IPR036736 ACP-like superfamily APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 SUPERFAMILY SSF54909 66 155 2.28E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 52 1.0E-19 T 11-10-2018 APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 SUPERFAMILY SSF46785 4 96 2.23E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 Gene3D G3DSA:3.30.70.920 60 143 2.8E-27 T 11-10-2018 APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 Pfam PF01037 Lrp/AsnC ligand binding domain 72 146 4.0E-25 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 Gene3D G3DSA:1.10.10.10 1 59 8.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 SMART SM00344 6 115 1.5E-42 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 2.7E-16 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 2.7E-16 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_10375 d6a13c2b4b3a9076c65857c4051ee14d 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 2.7E-16 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_00095 b6a729f19c3ea8f2bc9fcfbd17f6d4b3 335 SMART SM00382 27 210 4.2E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00095 b6a729f19c3ea8f2bc9fcfbd17f6d4b3 335 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00095 b6a729f19c3ea8f2bc9fcfbd17f6d4b3 335 Pfam PF00005 ABC transporter 18 160 3.7E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00095 b6a729f19c3ea8f2bc9fcfbd17f6d4b3 335 SUPERFAMILY SSF52540 3 242 1.14E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00095 b6a729f19c3ea8f2bc9fcfbd17f6d4b3 335 SUPERFAMILY SSF50331 258 331 5.44E-8 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_00095 b6a729f19c3ea8f2bc9fcfbd17f6d4b3 335 Pfam PF08402 TOBE domain 266 331 9.0E-11 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_00095 b6a729f19c3ea8f2bc9fcfbd17f6d4b3 335 Gene3D G3DSA:3.40.50.300 1 236 1.0E-76 T 11-10-2018 APT56_00280 5f5c62b5a2ba2a444f751f4a27ab7c46 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 11-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_00280 5f5c62b5a2ba2a444f751f4a27ab7c46 44 Pfam PF00468 Ribosomal protein L34 1 44 8.0E-23 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00280 5f5c62b5a2ba2a444f751f4a27ab7c46 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.935 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00280 5f5c62b5a2ba2a444f751f4a27ab7c46 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 6.0E-16 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00280 5f5c62b5a2ba2a444f751f4a27ab7c46 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.5E-24 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_04035 b6a2244d54a4d6b26cd5aa6643b39b46 280 SUPERFAMILY SSF103481 180 267 1.96E-8 T 11-10-2018 APT56_04035 b6a2244d54a4d6b26cd5aa6643b39b46 280 SUPERFAMILY SSF103481 38 125 4.97E-9 T 11-10-2018 APT56_04035 b6a2244d54a4d6b26cd5aa6643b39b46 280 Pfam PF00892 EamA-like transporter family 1 115 2.0E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_04035 b6a2244d54a4d6b26cd5aa6643b39b46 280 Pfam PF00892 EamA-like transporter family 137 268 8.3E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 PRINTS PR00834 HtrA/DegQ protease family signature 149 173 1.3E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 PRINTS PR00834 HtrA/DegQ protease family signature 293 305 1.3E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 PRINTS PR00834 HtrA/DegQ protease family signature 184 201 1.3E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 PRINTS PR00834 HtrA/DegQ protease family signature 88 100 1.3E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 PRINTS PR00834 HtrA/DegQ protease family signature 109 129 1.3E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 PRINTS PR00834 HtrA/DegQ protease family signature 206 223 1.3E-51 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 Gene3D G3DSA:2.30.42.10 247 354 8.7E-24 T 11-10-2018 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 Gene3D G3DSA:2.40.10.120 37 246 3.4E-80 T 11-10-2018 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 SUPERFAMILY SSF50156 378 445 5.78E-11 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 SUPERFAMILY SSF50156 210 336 1.23E-20 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 Gene3D G3DSA:2.30.42.10 358 446 1.3E-13 T 11-10-2018 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 Pfam PF13365 Trypsin-like peptidase domain 78 213 9.5E-33 T 11-10-2018 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 SUPERFAMILY SSF50494 37 249 4.2E-63 T 11-10-2018 IPR009003 Peptidase S1, PA clan APT56_20825 ec4d412289fd510c55778f09e6edad35 446 SMART SM00228 252 335 7.6E-11 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 SMART SM00228 355 438 0.054 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 Pfam PF13180 PDZ domain 253 342 2.2E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_20825 ec4d412289fd510c55778f09e6edad35 446 Pfam PF13180 PDZ domain 378 445 1.2E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 SMART SM00388 227 292 2.9E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 Gene3D G3DSA:3.30.565.10 295 449 2.3E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 285 7.8E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 SUPERFAMILY SSF47384 210 285 1.0E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 448 3.2E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 393 3.2E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 429 3.2E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 Pfam PF08521 Two-component sensor kinase N-terminal 11 151 1.7E-37 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 SUPERFAMILY SSF55874 282 452 7.86E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 448 1.2E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 SMART SM00387 341 451 1.2E-27 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_06150 41acd7e16e64b4d465e04d53be007af8 454 Gene3D G3DSA:1.10.287.130 179 291 3.8E-15 T 11-10-2018 APT56_09840 28c5f8eee1392ea4eb52c82534167dc6 177 Gene3D G3DSA:1.10.3210.10 2 177 1.1E-59 T 11-10-2018 APT56_09840 28c5f8eee1392ea4eb52c82534167dc6 177 SUPERFAMILY SSF109604 25 95 4.89E-8 T 11-10-2018 APT56_09840 28c5f8eee1392ea4eb52c82534167dc6 177 Pfam PF01966 HD domain 28 85 1.0E-6 T 11-10-2018 IPR006674 HD domain APT56_09840 28c5f8eee1392ea4eb52c82534167dc6 177 TIGRFAM TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein 3 174 1.4E-68 T 11-10-2018 IPR017670 Phosphonate degradation operon associated HDIG domain protein APT56_21835 c89511eb931c9d4e523b46f4aa3c3d6e 451 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_21835 c89511eb931c9d4e523b46f4aa3c3d6e 451 SUPERFAMILY SSF103473 11 430 4.05E-74 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_21835 c89511eb931c9d4e523b46f4aa3c3d6e 451 Pfam PF07690 Major Facilitator Superfamily 25 285 4.3E-34 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_21835 c89511eb931c9d4e523b46f4aa3c3d6e 451 Gene3D G3DSA:1.20.1250.20 11 220 2.4E-45 T 11-10-2018 APT56_21835 c89511eb931c9d4e523b46f4aa3c3d6e 451 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 91 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_21835 c89511eb931c9d4e523b46f4aa3c3d6e 451 Gene3D G3DSA:1.20.1250.20 250 429 1.2E-21 T 11-10-2018 APT56_17495 7fb73a0f25c60c55cfa80f28ca221f25 698 Gene3D G3DSA:2.170.130.10 42 166 9.6E-41 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_17495 7fb73a0f25c60c55cfa80f28ca221f25 698 Pfam PF07715 TonB-dependent Receptor Plug Domain 60 155 1.2E-22 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_17495 7fb73a0f25c60c55cfa80f28ca221f25 698 SUPERFAMILY SSF56935 21 697 3.66E-136 T 11-10-2018 APT56_17495 7fb73a0f25c60c55cfa80f28ca221f25 698 Gene3D G3DSA:2.40.170.20 167 698 1.9E-122 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_17495 7fb73a0f25c60c55cfa80f28ca221f25 698 Pfam PF00593 TonB dependent receptor 238 697 3.7E-58 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_17495 7fb73a0f25c60c55cfa80f28ca221f25 698 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 62 696 2.0E-105 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_23700 eb5146f3c7d49c20fc8d48e1ffba3b7f 202 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 73 6.6E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_23700 eb5146f3c7d49c20fc8d48e1ffba3b7f 202 Gene3D G3DSA:3.40.30.10 1 86 1.9E-21 T 11-10-2018 APT56_23700 eb5146f3c7d49c20fc8d48e1ffba3b7f 202 SUPERFAMILY SSF52833 2 85 9.14E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_23700 eb5146f3c7d49c20fc8d48e1ffba3b7f 202 Gene3D G3DSA:1.20.1050.10 87 202 7.9E-24 T 11-10-2018 APT56_23700 eb5146f3c7d49c20fc8d48e1ffba3b7f 202 SUPERFAMILY SSF47616 82 199 3.06E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_23700 eb5146f3c7d49c20fc8d48e1ffba3b7f 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 125 196 2.7E-8 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 SUPERFAMILY SSF52540 456 657 1.33E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 SUPERFAMILY SSF50249 25 174 1.49E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 Gene3D G3DSA:3.40.50.300 462 633 3.2E-55 T 11-10-2018 APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 Gene3D G3DSA:2.40.50.140 52 142 4.8E-7 T 11-10-2018 APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 SUPERFAMILY SSF52540 213 457 6.89E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 Pfam PF00270 DEAD/DEAH box helicase 293 435 5.8E-16 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 SMART SM00487 267 463 1.9E-28 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 Gene3D G3DSA:3.40.50.300 214 454 2.7E-82 T 11-10-2018 APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 38 668 2.1E-215 T 11-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 Pfam PF00271 Helicase conserved C-terminal domain 481 591 3.6E-17 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 SMART SM00490 509 592 2.8E-21 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_14720 2cb143189f95484e2c5b6c66f0544c8b 696 Pfam PF17191 RecG wedge domain 25 171 1.8E-13 T 11-10-2018 IPR033454 RecG, wedge domain APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 Gene3D G3DSA:3.30.1840.10 7 317 1.2E-96 T 11-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 Pfam PF13089 Polyphosphate kinase N-terminal domain 12 116 4.4E-34 T 11-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 SUPERFAMILY SSF56024 336 502 2.67E-55 T 11-10-2018 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 Pfam PF02503 Polyphosphate kinase middle domain 125 324 2.5E-57 T 11-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 SUPERFAMILY SSF56024 511 687 8.75E-69 T 11-10-2018 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 PIRSF PIRSF015589 3 690 7.2E-263 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 Gene3D G3DSA:3.30.870.10 510 689 3.6E-66 T 11-10-2018 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 Pfam PF13090 Polyphosphate kinase C-terminal domain 340 687 1.7E-154 T 11-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 SUPERFAMILY SSF143724 114 319 1.57E-61 T 11-10-2018 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 Gene3D G3DSA:3.30.870.10 331 509 9.7E-72 T 11-10-2018 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 11 687 3.5E-289 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 Hamap MF_00347 Polyphosphate kinase [ppk]. 8 691 27.57 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 APT56_21860 8eda78643dea1aa21b37eab443bf1dfa 691 SUPERFAMILY SSF140356 9 112 4.97E-34 T 11-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 Gene3D G3DSA:3.20.20.70 17 327 4.1E-125 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 SUPERFAMILY SSF102114 20 324 9.81E-95 T 11-10-2018 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 PIRSF PIRSF001619 11 332 1.4E-132 T 11-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 Hamap MF_01694 Biotin synthase [bioB]. 18 326 42.319 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 SMART SM00876 233 325 2.6E-47 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 233 323 7.3E-19 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 TIGRFAM TIGR00433 bioB: biotin synthase 27 323 4.0E-123 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 SMART SM00729 56 268 9.0E-39 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_22830 bf0e8a3aa6089cfed196cd50922a3cbd 341 Pfam PF04055 Radical SAM superfamily 63 216 4.9E-17 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_21555 4b3851d9b7a28d7f2ae9c48ebd8f9af1 90 SUPERFAMILY SSF55729 1 89 2.32E-27 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_21555 4b3851d9b7a28d7f2ae9c48ebd8f9af1 90 Pfam PF14542 GCN5-related N-acetyl-transferase 12 88 3.5E-26 T 11-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase APT56_21555 4b3851d9b7a28d7f2ae9c48ebd8f9af1 90 Gene3D G3DSA:3.40.630.30 1 90 1.3E-26 T 11-10-2018 APT56_00715 590873de4f5b333abd50cf947a124ea5 1403 Gene3D G3DSA:3.40.50.300 1044 1218 9.8E-9 T 11-10-2018 APT56_00715 590873de4f5b333abd50cf947a124ea5 1403 SUPERFAMILY SSF52540 603 1218 1.23E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00715 590873de4f5b333abd50cf947a124ea5 1403 SUPERFAMILY SSF52540 600 936 4.18E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00715 590873de4f5b333abd50cf947a124ea5 1403 Pfam PF00271 Helicase conserved C-terminal domain 1092 1184 3.3E-7 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_00715 590873de4f5b333abd50cf947a124ea5 1403 SMART SM00490 1088 1185 3.1E-5 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_12440 639cb6745dce0b16ccd6e051f85e1641 349 Pfam PF13177 DNA polymerase III, delta subunit 21 192 7.2E-38 T 11-10-2018 APT56_12440 639cb6745dce0b16ccd6e051f85e1641 349 SUPERFAMILY SSF52540 8 230 1.13E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12440 639cb6745dce0b16ccd6e051f85e1641 349 Gene3D G3DSA:3.40.50.300 6 193 1.2E-49 T 11-10-2018 APT56_12440 639cb6745dce0b16ccd6e051f85e1641 349 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 20 225 1.7E-64 T 11-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APT56_08730 07455ad3e75d916119bbfc90269b6fcb 147 Gene3D G3DSA:3.40.630.30 14 147 5.7E-39 T 11-10-2018 APT56_08730 07455ad3e75d916119bbfc90269b6fcb 147 SUPERFAMILY SSF55729 9 145 1.29E-36 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_08730 07455ad3e75d916119bbfc90269b6fcb 147 Pfam PF13673 Acetyltransferase (GNAT) domain 48 145 6.3E-21 T 11-10-2018 IPR000182 GNAT domain APT56_02245 ad16d211b19a96853ed3a1ddc930e5db 376 Pfam PF07687 Peptidase dimerisation domain 178 273 1.0E-17 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_02245 ad16d211b19a96853ed3a1ddc930e5db 376 Pfam PF01546 Peptidase family M20/M25/M40 77 373 1.1E-29 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_02245 ad16d211b19a96853ed3a1ddc930e5db 376 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APT56_02245 ad16d211b19a96853ed3a1ddc930e5db 376 SUPERFAMILY SSF53187 7 376 3.52E-50 T 11-10-2018 APT56_02245 ad16d211b19a96853ed3a1ddc930e5db 376 Gene3D G3DSA:3.40.630.10 16 364 1.4E-111 T 11-10-2018 APT56_02245 ad16d211b19a96853ed3a1ddc930e5db 376 SUPERFAMILY SSF55031 181 291 2.69E-21 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_02245 ad16d211b19a96853ed3a1ddc930e5db 376 PIRSF PIRSF037238 1 376 2.1E-140 T 11-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase APT56_02245 ad16d211b19a96853ed3a1ddc930e5db 376 Gene3D G3DSA:3.30.70.360 181 288 1.4E-111 T 11-10-2018 APT56_18000 314520fce11e5190baef34e5a2c3875c 398 Gene3D G3DSA:3.40.50.10300 185 397 3.8E-69 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APT56_18000 314520fce11e5190baef34e5a2c3875c 398 SUPERFAMILY SSF52507 3 182 1.96E-59 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 APT56_18000 314520fce11e5190baef34e5a2c3875c 398 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 367 4.5E-62 T 11-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APT56_18000 314520fce11e5190baef34e5a2c3875c 398 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 392 1.5E-125 T 11-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 APT56_18000 314520fce11e5190baef34e5a2c3875c 398 Gene3D G3DSA:3.40.50.1950 2 184 1.8E-56 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 APT56_18000 314520fce11e5190baef34e5a2c3875c 398 Pfam PF02441 Flavoprotein 7 178 3.2E-43 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APT56_18000 314520fce11e5190baef34e5a2c3875c 398 SUPERFAMILY SSF102645 184 396 4.97E-68 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APT56_18180 6a3079a71f6dbffe8e9a98dd1ed941b1 438 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 9 412 1.8E-80 T 11-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type APT56_18180 6a3079a71f6dbffe8e9a98dd1ed941b1 438 Pfam PF04403 Paraquat-inducible protein A 48 199 1.7E-40 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like APT56_18180 6a3079a71f6dbffe8e9a98dd1ed941b1 438 Pfam PF04403 Paraquat-inducible protein A 258 412 1.4E-50 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like APT56_20655 496d37e90df7f82035e1af280decabdb 809 Pfam PF13954 PapC N-terminal domain 27 159 4.4E-17 T 11-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 APT56_20655 496d37e90df7f82035e1af280decabdb 809 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 283 293 - T 11-10-2018 IPR018030 Fimbrial membrane usher, conserved site APT56_20655 496d37e90df7f82035e1af280decabdb 809 Gene3D G3DSA:2.60.40.3110 249 328 2.6E-16 T 11-10-2018 APT56_20655 496d37e90df7f82035e1af280decabdb 809 Pfam PF00577 Outer membrane usher protein 176 712 4.7E-78 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 APT56_20655 496d37e90df7f82035e1af280decabdb 809 Gene3D G3DSA:3.10.20.410 25 135 1.1E-8 T 11-10-2018 APT56_20655 496d37e90df7f82035e1af280decabdb 809 SUPERFAMILY SSF141729 26 131 1.7E-12 T 11-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 APT56_20655 496d37e90df7f82035e1af280decabdb 809 Gene3D G3DSA:2.60.40.2610 625 716 3.9E-17 T 11-10-2018 APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 Pfam PF00691 OmpA family 91 186 1.1E-26 T 11-10-2018 IPR006665 OmpA-like domain APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 ProSitePatterns PS01068 OmpA-like domain. 124 168 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 SUPERFAMILY SSF103088 83 192 1.57E-40 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 Gene3D G3DSA:3.30.1330.60 69 197 4.2E-45 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 137 154 1.8E-9 T 11-10-2018 APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 175 195 1.8E-9 T 11-10-2018 APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 155 174 1.8E-9 T 11-10-2018 APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 PRINTS PR01021 OMPA domain signature 122 137 5.8E-23 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 PRINTS PR01021 OMPA domain signature 137 153 5.8E-23 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_07530 dfa8eb619360c8cf3c672beb51d39310 197 PRINTS PR01021 OMPA domain signature 92 114 5.8E-23 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 SMART SM00387 334 445 2.3E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 SUPERFAMILY SSF55874 291 431 2.1E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 SUPERFAMILY SSF47384 203 283 8.04E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 422 8.1E-5 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 8.1E-5 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 427 6.6E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 SMART SM00388 220 285 2.2E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 221 282 9.5E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 Gene3D G3DSA:3.30.565.10 293 450 1.3E-25 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 Gene3D G3DSA:1.10.287.130 171 286 8.2E-15 T 11-10-2018 APT56_00195 14dc5bb5d843addddd46f0f68d744d47 458 Pfam PF08521 Two-component sensor kinase N-terminal 4 142 4.4E-31 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal APT56_19635 825537865157b1048759d63086fe73f4 311 Pfam PF05853 beta-keto acid cleavage enzyme 7 303 2.6E-105 T 11-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 APT56_19635 825537865157b1048759d63086fe73f4 311 Gene3D G3DSA:3.20.20.70 2 311 1.5E-127 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 Gene3D G3DSA:3.40.190.10 168 259 1.6E-35 T 11-10-2018 APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 8.6E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 SUPERFAMILY SSF53850 90 283 9.77E-22 T 11-10-2018 APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 Gene3D G3DSA:3.40.190.10 99 264 1.6E-35 T 11-10-2018 APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 SUPERFAMILY SSF46785 4 110 1.56E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 Pfam PF03466 LysR substrate binding domain 90 263 2.7E-23 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_07935 ba96310cfbb3911c1f81bf134ce2827e 286 Gene3D G3DSA:1.10.10.10 2 86 1.8E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14160 0a00cda56e62d2310b2f98b097e283f0 140 Pfam PF07681 DoxX 17 98 2.8E-11 T 11-10-2018 IPR032808 DoxX family APT56_02490 4551d7732841c34d9d3e956fad530c84 311 SUPERFAMILY SSF51735 97 285 3.37E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_02490 4551d7732841c34d9d3e956fad530c84 311 Gene3D G3DSA:3.40.50.720 97 282 2.8E-103 T 11-10-2018 APT56_02490 4551d7732841c34d9d3e956fad530c84 311 Gene3D G3DSA:3.40.50.720 4 308 2.8E-103 T 11-10-2018 APT56_02490 4551d7732841c34d9d3e956fad530c84 311 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT56_02490 4551d7732841c34d9d3e956fad530c84 311 SUPERFAMILY SSF52283 1 131 2.76E-31 T 11-10-2018 APT56_02490 4551d7732841c34d9d3e956fad530c84 311 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT56_02490 4551d7732841c34d9d3e956fad530c84 311 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3 309 2.8E-25 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_02490 4551d7732841c34d9d3e956fad530c84 311 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 284 6.4E-58 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 Pfam PF07702 UTRA domain 102 231 1.5E-24 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 Gene3D G3DSA:1.10.10.10 2 71 2.7E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 9.2E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 9.2E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 73 4.0E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 SUPERFAMILY SSF46785 1 82 6.92E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 SMART SM00866 94 233 1.2E-22 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 SMART SM00345 14 73 1.2E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 SUPERFAMILY SSF64288 61 236 1.73E-33 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 3 236 4.6E-72 T 11-10-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF APT56_22420 f3c4775b75ab1e39abaf90a1504c349b 240 Gene3D G3DSA:3.40.1410.10 72 227 3.0E-28 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_18390 d593649223f397d82e136c8b1471a9ce 249 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 245 7.1E-114 T 11-10-2018 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 APT56_18390 d593649223f397d82e136c8b1471a9ce 249 Gene3D G3DSA:3.90.850.10 39 246 1.5E-74 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_18390 d593649223f397d82e136c8b1471a9ce 249 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 48 244 8.3E-62 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_18390 d593649223f397d82e136c8b1471a9ce 249 SUPERFAMILY SSF56529 36 245 8.9E-75 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_15315 5af1eed69e2116aecb79768b6242bd4e 375 Pfam PF00149 Calcineurin-like phosphoesterase 3 99 2.2E-11 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_15315 5af1eed69e2116aecb79768b6242bd4e 375 Gene3D G3DSA:3.60.21.10 1 246 9.1E-30 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_15315 5af1eed69e2116aecb79768b6242bd4e 375 SUPERFAMILY SSF56300 4 292 2.67E-39 T 11-10-2018 APT56_15315 5af1eed69e2116aecb79768b6242bd4e 375 PIRSF PIRSF033093 1 371 3.6E-112 T 11-10-2018 IPR014577 Uncharacterised conserved protein UCP033093, metallophosphoesterase-type APT56_11890 62dd30a810ad6997a3bc274523f5422b 193 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 1 190 45.183 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 APT56_11890 62dd30a810ad6997a3bc274523f5422b 193 PIRSF PIRSF003159 1 184 1.3E-81 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 APT56_11890 62dd30a810ad6997a3bc274523f5422b 193 SUPERFAMILY SSF160930 6 163 7.32E-60 T 11-10-2018 APT56_11890 62dd30a810ad6997a3bc274523f5422b 193 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 1 163 4.0E-84 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 APT56_11890 62dd30a810ad6997a3bc274523f5422b 193 Pfam PF05280 Flagellar transcriptional activator (FlhC) 1 175 9.3E-82 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 APT56_09400 e01c5aa03d0b66aa4d149799f3f03581 308 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 45 260 9.6E-33 T 11-10-2018 IPR008775 Phytanoyl-CoA dioxygenase APT56_09400 e01c5aa03d0b66aa4d149799f3f03581 308 Gene3D G3DSA:2.60.120.620 1 304 2.1E-116 T 11-10-2018 APT56_09400 e01c5aa03d0b66aa4d149799f3f03581 308 SUPERFAMILY SSF51197 34 290 2.01E-65 T 11-10-2018 APT56_09400 e01c5aa03d0b66aa4d149799f3f03581 308 TIGRFAM TIGR02408 ectoine_ThpD: ectoine hydroxylase 21 298 1.7E-151 T 11-10-2018 IPR012774 Ectoine dioxygenase GO:0016706|GO:0055114 APT56_20090 2ffae1beeba55e7ff662aca6bc3cf8ae 244 Gene3D G3DSA:3.40.1080.10 3 237 4.0E-51 T 11-10-2018 APT56_20090 2ffae1beeba55e7ff662aca6bc3cf8ae 244 SUPERFAMILY SSF100950 6 232 1.26E-47 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_20090 2ffae1beeba55e7ff662aca6bc3cf8ae 244 Pfam PF01144 Coenzyme A transferase 15 170 1.4E-12 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_20090 2ffae1beeba55e7ff662aca6bc3cf8ae 244 SMART SM00882 9 202 2.2E-5 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_07770 a2815c65d257755ae0b61d03dcf399c1 168 Pfam PF01883 Iron-sulfur cluster assembly protein 10 73 7.0E-14 T 11-10-2018 IPR002744 MIP18 family-like APT56_07770 a2815c65d257755ae0b61d03dcf399c1 168 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 19 167 2.5E-60 T 11-10-2018 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit APT56_07770 a2815c65d257755ae0b61d03dcf399c1 168 SUPERFAMILY SSF117916 7 101 1.24E-26 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily APT56_07770 a2815c65d257755ae0b61d03dcf399c1 168 Gene3D G3DSA:3.30.300.130 7 102 2.5E-27 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily APT56_25840 5fd608c93497d58e18d408b6673d5785 313 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 300 2.8E-32 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 7 99 2.5E-43 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 SMART SM00411 8 97 7.0E-44 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 Pfam PF00216 Bacterial DNA-binding protein 8 96 2.0E-31 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 6 102 30.025 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 PRINTS PR01727 Prokaryotic integration host factor signature 47 62 5.0E-14 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 PRINTS PR01727 Prokaryotic integration host factor signature 65 78 5.0E-14 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 PRINTS PR01727 Prokaryotic integration host factor signature 81 95 5.0E-14 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 53 72 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 SUPERFAMILY SSF47729 8 97 1.46E-32 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APT56_10045 5bb23466a1a771fdfdc8de06d6fedb0d 108 Gene3D G3DSA:4.10.520.10 6 103 1.1E-36 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APT56_05190 4eb1fe9ac214f14b873e2304d3f2dec5 125 Gene3D G3DSA:3.40.50.1010 1 121 3.4E-10 T 11-10-2018 APT56_05190 4eb1fe9ac214f14b873e2304d3f2dec5 125 SUPERFAMILY SSF88723 1 118 2.58E-13 T 11-10-2018 IPR029060 PIN-like domain superfamily APT56_23995 344325b65b0dcae236dc47a5805a3c0b 241 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 8 227 7.0E-122 T 11-10-2018 IPR014063 Arsenate resistance ArsH APT56_23995 344325b65b0dcae236dc47a5805a3c0b 241 Gene3D G3DSA:3.40.50.360 2 241 1.1E-75 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_23995 344325b65b0dcae236dc47a5805a3c0b 241 Pfam PF03358 NADPH-dependent FMN reductase 35 178 2.1E-25 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 APT56_23995 344325b65b0dcae236dc47a5805a3c0b 241 SUPERFAMILY SSF52218 7 228 1.55E-59 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_00500 a52ec890f3b07992096c52aaa193f20f 128 SUPERFAMILY SSF55298 10 116 6.28E-27 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_00500 a52ec890f3b07992096c52aaa193f20f 128 Gene3D G3DSA:3.30.1330.40 1 119 1.8E-36 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_00500 a52ec890f3b07992096c52aaa193f20f 128 Pfam PF01042 Endoribonuclease L-PSP 10 115 2.7E-19 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_07485 2b4978c976064fc491607ac5b437924c 909 Gene3D G3DSA:1.25.40.10 400 555 1.7E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 Gene3D G3DSA:1.25.40.10 223 340 2.5E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 SUPERFAMILY SSF48452 37 203 1.56E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 SUPERFAMILY SSF48452 415 542 2.85E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 SMART SM00028 37 70 270.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 SMART SM00028 409 442 25.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 SMART SM00028 479 512 23.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 SMART SM00028 256 289 260.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 SMART SM00028 290 323 480.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 SUPERFAMILY SSF48452 253 453 3.54E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07485 2b4978c976064fc491607ac5b437924c 909 Pfam PF13283 Bacteriophage N adsorption protein A C-term 790 903 2.1E-24 T 11-10-2018 IPR025137 Bacteriophage N4 adsorption protein A, C-terminal APT56_01935 36c2060474065600eadeff91178a4164 299 Gene3D G3DSA:1.20.5.480 247 295 3.4E-12 T 11-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily APT56_01935 36c2060474065600eadeff91178a4164 299 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_01935 36c2060474065600eadeff91178a4164 299 PIRSF PIRSF036298 1 299 1.3E-153 T 11-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 APT56_01935 36c2060474065600eadeff91178a4164 299 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 289 2.3E-22 T 11-10-2018 IPR015246 Formate dehydrogenase, transmembrane APT56_01935 36c2060474065600eadeff91178a4164 299 SUPERFAMILY SSF54862 29 281 1.78E-72 T 11-10-2018 APT56_01935 36c2060474065600eadeff91178a4164 299 Gene3D G3DSA:3.30.70.20 27 227 2.5E-97 T 11-10-2018 APT56_01935 36c2060474065600eadeff91178a4164 299 Pfam PF13247 4Fe-4S dicluster domain 92 188 9.8E-24 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_01935 36c2060474065600eadeff91178a4164 299 Gene3D G3DSA:3.30.70.20 16 162 2.5E-97 T 11-10-2018 APT56_01935 36c2060474065600eadeff91178a4164 299 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 289 7.7E-142 T 11-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 APT56_25780 41a3118497f7aa6e2578c4051cb158a1 808 Gene3D G3DSA:2.60.40.3110 230 316 8.2E-8 T 11-10-2018 APT56_25780 41a3118497f7aa6e2578c4051cb158a1 808 SUPERFAMILY SSF141729 32 116 2.75E-6 T 11-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 APT56_25780 41a3118497f7aa6e2578c4051cb158a1 808 Pfam PF00577 Outer membrane usher protein 219 715 1.4E-33 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 APT56_25780 41a3118497f7aa6e2578c4051cb158a1 808 Gene3D G3DSA:2.60.40.2610 636 726 3.6E-10 T 11-10-2018 APT56_14925 bdcf42895b93637133acc12388a0c0d4 67 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 56 9.4E-16 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_14925 bdcf42895b93637133acc12388a0c0d4 67 Pfam PF01192 RNA polymerase Rpb6 8 56 8.5E-13 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 APT56_14925 bdcf42895b93637133acc12388a0c0d4 67 SUPERFAMILY SSF63562 1 63 2.09E-18 T 11-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 APT56_14925 bdcf42895b93637133acc12388a0c0d4 67 SMART SM01409 8 59 1.1E-11 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 APT56_14925 bdcf42895b93637133acc12388a0c0d4 67 Gene3D G3DSA:3.90.940.10 1 67 5.3E-19 T 11-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 APT56_14925 bdcf42895b93637133acc12388a0c0d4 67 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 60 15.492 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_10470 12c6ee34c330124fb604539c31a87184 275 Pfam PF00248 Aldo/keto reductase family 18 261 1.8E-49 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_10470 12c6ee34c330124fb604539c31a87184 275 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 125 142 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 APT56_10470 12c6ee34c330124fb604539c31a87184 275 PRINTS PR00069 Aldo-keto reductase signature 159 188 2.4E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_10470 12c6ee34c330124fb604539c31a87184 275 PRINTS PR00069 Aldo-keto reductase signature 196 220 2.4E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_10470 12c6ee34c330124fb604539c31a87184 275 PRINTS PR00069 Aldo-keto reductase signature 93 111 2.4E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_10470 12c6ee34c330124fb604539c31a87184 275 PRINTS PR00069 Aldo-keto reductase signature 37 61 2.4E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_10470 12c6ee34c330124fb604539c31a87184 275 PRINTS PR00069 Aldo-keto reductase signature 125 142 2.4E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_10470 12c6ee34c330124fb604539c31a87184 275 Gene3D G3DSA:3.20.20.100 1 275 1.1E-114 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_10470 12c6ee34c330124fb604539c31a87184 275 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 APT56_10470 12c6ee34c330124fb604539c31a87184 275 SUPERFAMILY SSF51430 6 266 2.36E-93 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_10470 12c6ee34c330124fb604539c31a87184 275 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 APT56_10470 12c6ee34c330124fb604539c31a87184 275 PIRSF PIRSF000097 1 268 2.5E-91 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 Gene3D G3DSA:3.40.350.10 1 148 2.2E-42 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 Gene3D G3DSA:3.90.230.10 303 596 7.4E-94 T 11-10-2018 APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 SUPERFAMILY SSF55920 305 562 2.22E-53 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 Gene3D G3DSA:3.40.350.10 149 292 7.8E-31 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 SUPERFAMILY SSF53092 171 299 8.11E-7 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 Pfam PF01321 Creatinase/Prolidase N-terminal domain 7 130 8.8E-17 T 11-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 Pfam PF00557 Metallopeptidase family M24 311 524 2.5E-43 T 11-10-2018 IPR000994 Peptidase M24 APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 Pfam PF16188 C-terminal region of peptidase_M24 536 596 1.7E-25 T 11-10-2018 IPR032416 Peptidase M24, C-terminal domain APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 SUPERFAMILY SSF53092 5 127 3.66E-10 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APT56_07050 abcfcbbc72d1c011f1f009b625ce7b5b 596 Pfam PF16189 Creatinase/Prolidase N-terminal domain 153 308 6.3E-35 T 11-10-2018 APT56_25570 9dc5942940a023c108f6b8659d0493df 259 Pfam PF14464 Prokaryotic homologs of the JAB domain 3 98 4.3E-18 T 11-10-2018 IPR028090 JAB domain, prokaryotic APT56_25570 9dc5942940a023c108f6b8659d0493df 259 SMART SM00232 1 118 0.0011 T 11-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 APT56_25570 9dc5942940a023c108f6b8659d0493df 259 SUPERFAMILY SSF102712 3 101 3.4E-21 T 11-10-2018 APT56_25570 9dc5942940a023c108f6b8659d0493df 259 Gene3D G3DSA:3.90.1720.10 120 257 1.1E-6 T 11-10-2018 APT56_25570 9dc5942940a023c108f6b8659d0493df 259 Pfam PF00877 NlpC/P60 family 124 254 1.3E-13 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain APT56_25570 9dc5942940a023c108f6b8659d0493df 259 SUPERFAMILY SSF54001 120 255 1.42E-9 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APT56_25570 9dc5942940a023c108f6b8659d0493df 259 Gene3D G3DSA:3.40.140.10 1 111 2.1E-22 T 11-10-2018 APT56_21475 d8874e78d67990d7f86864e346283e59 384 Gene3D G3DSA:3.40.710.10 6 275 1.3E-89 T 11-10-2018 APT56_21475 d8874e78d67990d7f86864e346283e59 384 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 138 151 4.0E-19 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_21475 d8874e78d67990d7f86864e346283e59 384 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 56 67 4.0E-19 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_21475 d8874e78d67990d7f86864e346283e59 384 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 111 128 4.0E-19 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_21475 d8874e78d67990d7f86864e346283e59 384 SUPERFAMILY SSF69189 276 366 2.75E-19 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_21475 d8874e78d67990d7f86864e346283e59 384 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 23 255 1.9E-74 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 APT56_21475 d8874e78d67990d7f86864e346283e59 384 SMART SM00936 276 364 6.1E-23 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_21475 d8874e78d67990d7f86864e346283e59 384 Gene3D G3DSA:2.60.410.10 276 364 7.3E-21 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_21475 d8874e78d67990d7f86864e346283e59 384 SUPERFAMILY SSF56601 5 276 3.41E-77 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_21475 d8874e78d67990d7f86864e346283e59 384 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 276 363 2.8E-16 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APT56_13860 c9b9eb52e0df03adaf0156d0d63cb783 215 Pfam PF04972 BON domain 78 145 1.2E-17 T 11-10-2018 IPR007055 BON domain APT56_13860 c9b9eb52e0df03adaf0156d0d63cb783 215 Pfam PF04972 BON domain 151 214 6.6E-16 T 11-10-2018 IPR007055 BON domain APT56_13860 c9b9eb52e0df03adaf0156d0d63cb783 215 Pfam PF04972 BON domain 2 69 4.2E-17 T 11-10-2018 IPR007055 BON domain APT56_13860 c9b9eb52e0df03adaf0156d0d63cb783 215 SMART SM00749 7 70 0.029 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria APT56_13860 c9b9eb52e0df03adaf0156d0d63cb783 215 SMART SM00749 153 215 4.3E-4 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria APT56_13860 c9b9eb52e0df03adaf0156d0d63cb783 215 SMART SM00749 82 149 37.0 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria APT56_16015 703ea2307f105117c8163298b10de133 253 Gene3D G3DSA:1.25.40.290 113 253 4.3E-28 T 11-10-2018 APT56_16015 703ea2307f105117c8163298b10de133 253 SUPERFAMILY SSF48371 61 251 9.87E-35 T 11-10-2018 IPR016024 Armadillo-type fold APT56_08920 ed281b4e22aaebdd26c971bd376cf5e7 397 Gene3D G3DSA:3.20.20.140 52 347 5.4E-115 T 11-10-2018 APT56_08920 ed281b4e22aaebdd26c971bd376cf5e7 397 SUPERFAMILY SSF51556 51 357 3.54E-74 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_08920 ed281b4e22aaebdd26c971bd376cf5e7 397 SUPERFAMILY SSF51338 3 392 4.33E-13 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_08920 ed281b4e22aaebdd26c971bd376cf5e7 397 Pfam PF07969 Amidohydrolase family 148 387 1.8E-21 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_08920 ed281b4e22aaebdd26c971bd376cf5e7 397 Gene3D G3DSA:2.30.40.10 14 387 5.4E-115 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_25660 671e15870dff966dc0efd7a7ab9f9394 1027 Pfam PF14903 WG containing repeat 899 928 0.0097 T 11-10-2018 IPR032774 WG containing repeat APT56_25660 671e15870dff966dc0efd7a7ab9f9394 1027 Pfam PF14903 WG containing repeat 789 822 0.17 T 11-10-2018 IPR032774 WG containing repeat APT56_25660 671e15870dff966dc0efd7a7ab9f9394 1027 Pfam PF14903 WG containing repeat 938 969 8.5E-7 T 11-10-2018 IPR032774 WG containing repeat APT56_25660 671e15870dff966dc0efd7a7ab9f9394 1027 Pfam PF14903 WG containing repeat 672 703 6.7E-4 T 11-10-2018 IPR032774 WG containing repeat APT56_25660 671e15870dff966dc0efd7a7ab9f9394 1027 Pfam PF14903 WG containing repeat 76 110 1.8E-12 T 11-10-2018 IPR032774 WG containing repeat APT56_25660 671e15870dff966dc0efd7a7ab9f9394 1027 Pfam PF14903 WG containing repeat 559 587 8.8E-5 T 11-10-2018 IPR032774 WG containing repeat APT56_25660 671e15870dff966dc0efd7a7ab9f9394 1027 Pfam PF14903 WG containing repeat 110 142 4.7E-6 T 11-10-2018 IPR032774 WG containing repeat APT56_25660 671e15870dff966dc0efd7a7ab9f9394 1027 SUPERFAMILY SSF69360 74 131 3.53E-6 T 11-10-2018 APT56_20420 4f749c43509851c0ebbd74e17a928bc6 117 Gene3D G3DSA:3.30.70.100 9 112 6.7E-12 T 11-10-2018 APT56_20420 4f749c43509851c0ebbd74e17a928bc6 117 Pfam PF03992 Antibiotic biosynthesis monooxygenase 17 69 7.3E-6 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain APT56_20420 4f749c43509851c0ebbd74e17a928bc6 117 SUPERFAMILY SSF54909 11 108 4.13E-14 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_24050 28c8bcbc31daf237d6ca4c56a1a062a4 258 Pfam PF07103 Protein of unknown function (DUF1365) 8 251 2.1E-73 T 11-10-2018 IPR010775 Protein of unknown function DUF1365 APT56_03420 be1023210571843ef60a03c3b4a0f0a6 278 SUPERFAMILY SSF161098 81 261 6.02E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03420 be1023210571843ef60a03c3b4a0f0a6 278 Gene3D G3DSA:1.10.3720.10 81 276 1.3E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03420 be1023210571843ef60a03c3b4a0f0a6 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 276 4.9E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12260 213a9370cda3e5e0e56c77273f369ace 254 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 7.2E-78 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT56_12260 213a9370cda3e5e0e56c77273f369ace 254 SUPERFAMILY SSF64005 12 238 5.23E-84 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 APT56_12260 213a9370cda3e5e0e56c77273f369ace 254 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 39.564 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT56_12260 213a9370cda3e5e0e56c77273f369ace 254 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 11-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 APT56_12260 213a9370cda3e5e0e56c77273f369ace 254 Gene3D G3DSA:3.40.1180.10 2 243 2.7E-89 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 APT56_12260 213a9370cda3e5e0e56c77273f369ace 254 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 15 242 1.9E-85 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APT56_21065 5ae375f32172d11523a1eae946e0a2d9 242 Gene3D G3DSA:1.10.760.10 48 232 1.1E-69 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21065 5ae375f32172d11523a1eae946e0a2d9 242 SUPERFAMILY SSF46626 21 202 9.84E-28 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_21065 5ae375f32172d11523a1eae946e0a2d9 242 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 11 186 2.3E-80 T 11-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO APT56_21065 5ae375f32172d11523a1eae946e0a2d9 242 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 11 190 4.5E-77 T 11-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.557 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 3.2E-64 T 11-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.5E-24 T 11-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.7E-29 T 11-10-2018 IPR020784 Ribosomal protein L11, N-terminal APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 SUPERFAMILY SSF46906 68 141 1.83E-26 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 11-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 Gene3D G3DSA:3.30.1550.10 2 72 6.3E-35 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 SUPERFAMILY SSF54747 3 73 2.22E-30 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-16 T 11-10-2018 APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 SMART SM00649 9 141 4.5E-85 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 APT56_00030 d50136e4dd21551faf0c4b1cad73d016 143 Gene3D G3DSA:1.10.10.250 73 141 8.1E-28 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1165 0.0 T 11-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 SMART SM00968 518 625 4.0E-10 T 11-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 PIRSF PIRSF005719 1 1173 5.3E-248 T 11-10-2018 IPR024704 Structural maintenance of chromosomes protein APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 SUPERFAMILY SSF57997 272 496 9.15E-5 T 11-10-2018 APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 SUPERFAMILY SSF52540 2 1167 4.04E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 Gene3D G3DSA:3.40.50.300 1013 1176 9.1E-46 T 11-10-2018 APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1158 6.7E-64 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1167 22.265 T 11-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 Gene3D G3DSA:3.40.50.300 1 235 3.4E-49 T 11-10-2018 APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 SUPERFAMILY SSF75553 519 673 4.58E-9 T 11-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 APT56_06530 976223d6f535723c0e9ce41d45db7e4f 1177 Pfam PF06470 SMC proteins Flexible Hinge Domain 523 623 8.6E-6 T 11-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 APT56_19555 2819522d53f95adb3f68abfdd611a308 282 Pfam PF09339 IclR helix-turn-helix domain 31 81 4.2E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_19555 2819522d53f95adb3f68abfdd611a308 282 Gene3D G3DSA:3.30.450.40 103 278 2.4E-30 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_19555 2819522d53f95adb3f68abfdd611a308 282 SUPERFAMILY SSF55781 93 274 6.21E-33 T 11-10-2018 APT56_19555 2819522d53f95adb3f68abfdd611a308 282 SMART SM00346 29 118 8.9E-16 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_19555 2819522d53f95adb3f68abfdd611a308 282 SUPERFAMILY SSF46785 31 98 4.85E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_19555 2819522d53f95adb3f68abfdd611a308 282 Pfam PF01614 Bacterial transcriptional regulator 147 269 5.1E-13 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_19555 2819522d53f95adb3f68abfdd611a308 282 Gene3D G3DSA:1.10.10.10 23 98 1.1E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04695 ed17110430f67ab345665f5511fed4a6 179 Pfam PF13242 HAD-hyrolase-like 99 169 4.8E-10 T 11-10-2018 APT56_04695 ed17110430f67ab345665f5511fed4a6 179 SUPERFAMILY SSF56784 2 176 2.24E-45 T 11-10-2018 IPR036412 HAD-like superfamily APT56_04695 ed17110430f67ab345665f5511fed4a6 179 PIRSF PIRSF004682 1 179 7.7E-56 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 APT56_04695 ed17110430f67ab345665f5511fed4a6 179 Gene3D G3DSA:3.40.50.1000 1 179 9.2E-55 T 11-10-2018 IPR023214 HAD superfamily APT56_04695 ed17110430f67ab345665f5511fed4a6 179 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 2 144 1.8E-31 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APT56_04695 ed17110430f67ab345665f5511fed4a6 179 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 3 145 4.1E-44 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 APT56_14525 bd753d2084a0a633817319956a47e0f1 353 Gene3D G3DSA:3.90.180.10 17 343 6.1E-93 T 11-10-2018 APT56_14525 bd753d2084a0a633817319956a47e0f1 353 SMART SM00829 8 350 0.0016 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APT56_14525 bd753d2084a0a633817319956a47e0f1 353 SUPERFAMILY SSF50129 1 191 8.67E-38 T 11-10-2018 IPR011032 GroES-like superfamily APT56_14525 bd753d2084a0a633817319956a47e0f1 353 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 71 85 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APT56_14525 bd753d2084a0a633817319956a47e0f1 353 Pfam PF00107 Zinc-binding dehydrogenase 187 314 5.4E-22 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APT56_14525 bd753d2084a0a633817319956a47e0f1 353 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 140 1.6E-30 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APT56_14525 bd753d2084a0a633817319956a47e0f1 353 SUPERFAMILY SSF51735 147 319 8.95E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_14525 bd753d2084a0a633817319956a47e0f1 353 Gene3D G3DSA:3.40.50.720 159 300 6.1E-93 T 11-10-2018 APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 Pfam PF00106 short chain dehydrogenase 6 195 2.2E-44 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 SUPERFAMILY SSF51735 3 247 1.3E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 1.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.5E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_18280 3b26f5b72a608baef54dc6a7e9f032d0 252 Gene3D G3DSA:3.40.50.720 1 251 2.1E-74 T 11-10-2018 APT56_02045 cae190c66031361055b5901d27ddf1d4 239 Pfam PF00834 Ribulose-phosphate 3 epimerase family 15 215 6.8E-87 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APT56_02045 cae190c66031361055b5901d27ddf1d4 239 SUPERFAMILY SSF51366 13 229 6.44E-72 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_02045 cae190c66031361055b5901d27ddf1d4 239 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 144 166 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APT56_02045 cae190c66031361055b5901d27ddf1d4 239 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 42 56 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APT56_02045 cae190c66031361055b5901d27ddf1d4 239 PIRSF PIRSF001461 9 238 1.0E-100 T 11-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APT56_02045 cae190c66031361055b5901d27ddf1d4 239 Gene3D G3DSA:3.20.20.70 8 235 3.1E-79 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_02045 cae190c66031361055b5901d27ddf1d4 239 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 15 228 1.6E-93 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APT56_05825 c73d32dc05a27e8803cb0ad18142b0f5 399 SUPERFAMILY SSF51338 3 391 1.67E-10 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_05825 c73d32dc05a27e8803cb0ad18142b0f5 399 Gene3D G3DSA:2.30.40.10 3 388 3.0E-108 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_05825 c73d32dc05a27e8803cb0ad18142b0f5 399 Pfam PF07969 Amidohydrolase family 46 388 3.2E-21 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_05825 c73d32dc05a27e8803cb0ad18142b0f5 399 Gene3D G3DSA:3.20.20.140 53 348 3.0E-108 T 11-10-2018 APT56_05825 c73d32dc05a27e8803cb0ad18142b0f5 399 SUPERFAMILY SSF51556 52 358 6.81E-68 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_16675 1899d60801b6090f80ebd0c2b5c0fdb3 298 Gene3D G3DSA:3.40.190.290 89 286 5.8E-61 T 11-10-2018 APT56_16675 1899d60801b6090f80ebd0c2b5c0fdb3 298 Pfam PF03466 LysR substrate binding domain 86 284 1.2E-42 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16675 1899d60801b6090f80ebd0c2b5c0fdb3 298 Gene3D G3DSA:1.10.10.10 1 85 2.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16675 1899d60801b6090f80ebd0c2b5c0fdb3 298 SUPERFAMILY SSF53850 87 288 6.88E-46 T 11-10-2018 APT56_16675 1899d60801b6090f80ebd0c2b5c0fdb3 298 SUPERFAMILY SSF46785 1 110 8.95E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16675 1899d60801b6090f80ebd0c2b5c0fdb3 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 7.3E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_19475 5e8a2a16d20c882fe1f9e600719d167a 327 Pfam PF04773 FecR protein 118 210 2.2E-21 T 11-10-2018 IPR006860 FecR protein APT56_19475 5e8a2a16d20c882fe1f9e600719d167a 327 Gene3D G3DSA:2.60.120.1440 112 251 4.7E-26 T 11-10-2018 APT56_19475 5e8a2a16d20c882fe1f9e600719d167a 327 PIRSF PIRSF018266 3 327 6.8E-90 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_19475 5e8a2a16d20c882fe1f9e600719d167a 327 Pfam PF16220 Domain of unknown function (DUF4880) 13 54 7.8E-12 T 11-10-2018 IPR032623 FecR, N-terminal APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 SUPERFAMILY SSF53850 90 295 1.57E-34 T 11-10-2018 APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.5E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 SUPERFAMILY SSF46785 4 88 1.03E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 Gene3D G3DSA:1.10.10.10 1 86 6.4E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.8E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 Gene3D G3DSA:3.40.190.10 92 284 3.3E-57 T 11-10-2018 APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 Pfam PF03466 LysR substrate binding domain 89 289 2.1E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_04920 4c8e8e5eaaefc580b0c5d658d21fd1b8 310 Gene3D G3DSA:3.40.190.10 164 268 3.3E-57 T 11-10-2018 APT56_23800 a6ecbf6a2524cc3abaf63c9e7facd311 398 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 38 3.0E-5 T 11-10-2018 APT56_23800 a6ecbf6a2524cc3abaf63c9e7facd311 398 Pfam PF01494 FAD binding domain 316 387 1.1E-11 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_23800 a6ecbf6a2524cc3abaf63c9e7facd311 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 3.3E-15 T 11-10-2018 APT56_23800 a6ecbf6a2524cc3abaf63c9e7facd311 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 321 336 3.3E-15 T 11-10-2018 APT56_23800 a6ecbf6a2524cc3abaf63c9e7facd311 398 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 352 3.3E-15 T 11-10-2018 APT56_23800 a6ecbf6a2524cc3abaf63c9e7facd311 398 SUPERFAMILY SSF51905 1 393 8.98E-34 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_23800 a6ecbf6a2524cc3abaf63c9e7facd311 398 Gene3D G3DSA:3.50.50.60 3 396 6.6E-80 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_25050 953bae5f2dc70db4588e683878b8f20d 232 SUPERFAMILY SSF47616 102 230 1.39E-31 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_25050 953bae5f2dc70db4588e683878b8f20d 232 Pfam PF02798 Glutathione S-transferase, N-terminal domain 21 98 1.3E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_25050 953bae5f2dc70db4588e683878b8f20d 232 Gene3D G3DSA:1.20.1050.10 106 221 6.9E-110 T 11-10-2018 APT56_25050 953bae5f2dc70db4588e683878b8f20d 232 Gene3D G3DSA:3.40.30.10 7 231 6.9E-110 T 11-10-2018 APT56_25050 953bae5f2dc70db4588e683878b8f20d 232 Pfam PF00043 Glutathione S-transferase, C-terminal domain 142 222 4.8E-9 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_25050 953bae5f2dc70db4588e683878b8f20d 232 SUPERFAMILY SSF52833 12 102 1.39E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_04900 ce8003c2effb7372afff97b78fc8b0b4 467 PIRSF PIRSF006060 1 467 9.3E-81 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_04900 ce8003c2effb7372afff97b78fc8b0b4 467 Gene3D G3DSA:1.20.1740.10 16 462 6.6E-86 T 11-10-2018 APT56_04900 ce8003c2effb7372afff97b78fc8b0b4 467 Pfam PF13520 Amino acid permease 26 421 1.8E-50 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_19630 e781364373f9943b32d448dc2fe0690b 355 Gene3D G3DSA:3.40.50.1970 2 159 5.1E-35 T 11-10-2018 APT56_19630 e781364373f9943b32d448dc2fe0690b 355 SUPERFAMILY SSF56796 2 353 3.14E-70 T 11-10-2018 APT56_19630 e781364373f9943b32d448dc2fe0690b 355 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 345 1.0E-49 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 APT56_19630 e781364373f9943b32d448dc2fe0690b 355 PIRSF PIRSF000112 1 349 1.4E-64 T 11-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 APT56_19630 e781364373f9943b32d448dc2fe0690b 355 Gene3D G3DSA:1.20.1090.10 160 355 1.3E-53 T 11-10-2018 APT56_19285 703c756a4cf91df9c94cc3c61dc46a03 135 SUPERFAMILY SSF52821 28 132 1.83E-24 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_19285 703c756a4cf91df9c94cc3c61dc46a03 135 SMART SM00450 32 129 1.1E-15 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_19285 703c756a4cf91df9c94cc3c61dc46a03 135 Pfam PF00581 Rhodanese-like domain 43 124 4.9E-12 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_19285 703c756a4cf91df9c94cc3c61dc46a03 135 ProSitePatterns PS00380 Rhodanese signature 1. 57 68 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 APT56_19285 703c756a4cf91df9c94cc3c61dc46a03 135 Gene3D G3DSA:3.40.250.10 13 131 4.9E-28 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_24510 53874a130ad0136f57253f51dc94a992 532 SMART SM00283 262 509 2.7E-95 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_24510 53874a130ad0136f57253f51dc94a992 532 Pfam PF02203 Tar ligand binding domain homologue 1 165 9.7E-33 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_24510 53874a130ad0136f57253f51dc94a992 532 Gene3D G3DSA:1.20.120.30 22 183 1.9E-17 T 11-10-2018 APT56_24510 53874a130ad0136f57253f51dc94a992 532 Pfam PF00672 HAMP domain 209 258 2.5E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_24510 53874a130ad0136f57253f51dc94a992 532 SUPERFAMILY SSF47170 26 173 1.29E-19 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_24510 53874a130ad0136f57253f51dc94a992 532 SUPERFAMILY SSF58104 229 510 4.05E-74 T 11-10-2018 APT56_24510 53874a130ad0136f57253f51dc94a992 532 Gene3D G3DSA:1.10.287.950 209 511 1.1E-91 T 11-10-2018 APT56_24510 53874a130ad0136f57253f51dc94a992 532 SMART SM00304 209 261 5.9E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_24510 53874a130ad0136f57253f51dc94a992 532 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 477 3.3E-54 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_24510 53874a130ad0136f57253f51dc94a992 532 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 312 8.6E-70 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_24510 53874a130ad0136f57253f51dc94a992 532 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 8.6E-70 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_24510 53874a130ad0136f57253f51dc94a992 532 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 61 76 8.6E-70 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_24510 53874a130ad0136f57253f51dc94a992 532 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 360 387 8.6E-70 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_24510 53874a130ad0136f57253f51dc94a992 532 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 389 418 8.6E-70 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_24510 53874a130ad0136f57253f51dc94a992 532 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 437 466 8.6E-70 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_03780 fd0290544020542319ba80dfbedcba65 88 PIRSF PIRSF004669 1 88 2.7E-27 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_03780 fd0290544020542319ba80dfbedcba65 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 7.1E-26 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_03780 fd0290544020542319ba80dfbedcba65 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 7.6E-24 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_03780 fd0290544020542319ba80dfbedcba65 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 7.6E-24 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_03780 fd0290544020542319ba80dfbedcba65 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 7.6E-24 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_03780 fd0290544020542319ba80dfbedcba65 88 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 84 1.4E-35 T 11-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 APT56_02450 5a7989236dcabda69644ef5faa851df4 523 Pfam PF04262 Glutamate-cysteine ligase 14 375 1.8E-154 T 11-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APT56_02450 5a7989236dcabda69644ef5faa851df4 523 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 523 210.329 T 11-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APT56_02450 5a7989236dcabda69644ef5faa851df4 523 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 7 514 7.6E-189 T 11-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APT56_02450 5a7989236dcabda69644ef5faa851df4 523 Gene3D G3DSA:3.30.590.20 17 521 9.1E-185 T 11-10-2018 APT56_02450 5a7989236dcabda69644ef5faa851df4 523 SUPERFAMILY SSF55931 8 511 9.81E-182 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT56_10875 7afb633641bfc98e54c4df2953afafd1 166 Gene3D G3DSA:2.30.110.10 5 166 1.4E-44 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_10875 7afb633641bfc98e54c4df2953afafd1 166 Pfam PF01613 Flavin reductase like domain 21 164 8.7E-34 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_10875 7afb633641bfc98e54c4df2953afafd1 166 SUPERFAMILY SSF50475 6 165 1.47E-40 T 11-10-2018 APT56_10875 7afb633641bfc98e54c4df2953afafd1 166 SMART SM00903 20 164 4.8E-49 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_08460 89cdde2201f5e266f642a61816e7b5f2 372 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 2.1E-39 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal APT56_08460 89cdde2201f5e266f642a61816e7b5f2 372 SUPERFAMILY SSF51735 136 320 2.1E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_08460 89cdde2201f5e266f642a61816e7b5f2 372 Gene3D G3DSA:3.40.50.720 3 366 7.9E-140 T 11-10-2018 APT56_08460 89cdde2201f5e266f642a61816e7b5f2 372 Gene3D G3DSA:3.40.50.720 136 321 7.9E-140 T 11-10-2018 APT56_08460 89cdde2201f5e266f642a61816e7b5f2 372 SMART SM01003 4 136 4.2E-63 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal APT56_08460 89cdde2201f5e266f642a61816e7b5f2 372 SMART SM01002 145 314 2.5E-82 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APT56_08460 89cdde2201f5e266f642a61816e7b5f2 372 SUPERFAMILY SSF52283 1 167 2.81E-47 T 11-10-2018 APT56_08460 89cdde2201f5e266f642a61816e7b5f2 372 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 370 2.1E-72 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APT56_15610 31dc98c071104be33173a3a2c73118eb 513 Pfam PF00324 Amino acid permease 26 478 1.5E-129 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 APT56_15610 31dc98c071104be33173a3a2c73118eb 513 Gene3D G3DSA:1.20.1740.10 16 486 1.1E-60 T 11-10-2018 APT56_15610 31dc98c071104be33173a3a2c73118eb 513 PIRSF PIRSF006060 5 498 2.8E-79 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_23025 6ce9c5b0c73c0293c96cb74d58948038 322 Gene3D G3DSA:3.40.190.150 28 313 5.4E-102 T 11-10-2018 APT56_23025 6ce9c5b0c73c0293c96cb74d58948038 322 Gene3D G3DSA:3.40.190.10 125 248 5.4E-102 T 11-10-2018 APT56_23025 6ce9c5b0c73c0293c96cb74d58948038 322 PIRSF PIRSF017082 2 321 2.5E-66 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_23025 6ce9c5b0c73c0293c96cb74d58948038 322 SUPERFAMILY SSF53850 113 283 1.28E-8 T 11-10-2018 APT56_23025 6ce9c5b0c73c0293c96cb74d58948038 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 316 3.9E-74 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21850 40c45037a9bf050c522490f9a100d072 338 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 37 329 7.1E-91 T 11-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 APT56_21850 40c45037a9bf050c522490f9a100d072 338 Gene3D G3DSA:1.10.3720.10 91 333 1.9E-29 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21850 40c45037a9bf050c522490f9a100d072 338 SUPERFAMILY SSF161098 46 323 1.1E-33 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21850 40c45037a9bf050c522490f9a100d072 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 327 4.0E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_27615 78fc4c0a6b058445a635d0d83666ae92 448 Pfam PF01578 Cytochrome C assembly protein 186 443 1.7E-44 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APT56_27615 78fc4c0a6b058445a635d0d83666ae92 448 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 159 446 1.9E-73 T 11-10-2018 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 APT56_08770 c745a7aeca693f692bd579c71c350d1a 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 5.9E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_08770 c745a7aeca693f692bd579c71c350d1a 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 5.9E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_08770 c745a7aeca693f692bd579c71c350d1a 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 5.9E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_08770 c745a7aeca693f692bd579c71c350d1a 90 SMART SM00411 1 90 8.0E-40 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_08770 c745a7aeca693f692bd579c71c350d1a 90 Gene3D G3DSA:4.10.520.10 1 90 2.7E-36 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APT56_08770 c745a7aeca693f692bd579c71c350d1a 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.7E-34 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_08770 c745a7aeca693f692bd579c71c350d1a 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 APT56_08770 c745a7aeca693f692bd579c71c350d1a 90 SUPERFAMILY SSF47729 1 90 8.54E-33 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APT56_15550 c18e5e58ba17830a4998a2747a74c5e1 147 SUPERFAMILY SSF55620 1 145 2.11E-40 T 11-10-2018 APT56_15550 c18e5e58ba17830a4998a2747a74c5e1 147 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 4 117 1.5E-29 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 APT56_15550 c18e5e58ba17830a4998a2747a74c5e1 147 Gene3D G3DSA:3.30.479.10 92 147 6.5E-11 T 11-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 APT56_15550 c18e5e58ba17830a4998a2747a74c5e1 147 Gene3D G3DSA:3.30.479.10 1 91 1.8E-24 T 11-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 APT56_15550 c18e5e58ba17830a4998a2747a74c5e1 147 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 146 2.1E-36 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 APT56_15550 c18e5e58ba17830a4998a2747a74c5e1 147 PIRSF PIRSF006113 88 147 0.12 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 APT56_15550 c18e5e58ba17830a4998a2747a74c5e1 147 PIRSF PIRSF006113 1 81 7.6E-18 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 APT56_15455 4ce8f2c93451c8844b3814979fd8d987 204 SUPERFAMILY SSF109604 25 196 2.36E-33 T 11-10-2018 APT56_15455 4ce8f2c93451c8844b3814979fd8d987 204 Pfam PF01966 HD domain 35 156 1.7E-20 T 11-10-2018 IPR006674 HD domain APT56_15455 4ce8f2c93451c8844b3814979fd8d987 204 SMART SM00471 29 166 7.9E-8 T 11-10-2018 IPR003607 HD/PDEase domain APT56_15455 4ce8f2c93451c8844b3814979fd8d987 204 Gene3D G3DSA:1.10.3210.10 17 200 1.0E-61 T 11-10-2018 APT56_15455 4ce8f2c93451c8844b3814979fd8d987 204 TIGRFAM TIGR00277 HDIG: HDIG domain 33 124 1.8E-8 T 11-10-2018 IPR006675 HDIG domain APT56_02830 13d83c9584f1af85839881b322134785 450 Pfam PF12831 FAD dependent oxidoreductase 17 439 2.1E-108 T 11-10-2018 IPR039649 Digeranylgeranylglycerophospholipid reductase, N-terminal APT56_02830 13d83c9584f1af85839881b322134785 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 351 4.2E-7 T 11-10-2018 APT56_02830 13d83c9584f1af85839881b322134785 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 17 39 4.2E-7 T 11-10-2018 APT56_02830 13d83c9584f1af85839881b322134785 450 SUPERFAMILY SSF51905 4 423 3.17E-22 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02830 13d83c9584f1af85839881b322134785 450 Gene3D G3DSA:3.50.50.60 14 209 5.2E-18 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 Gene3D G3DSA:3.40.190.10 103 292 6.8E-28 T 11-10-2018 APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 8.4E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 Gene3D G3DSA:3.40.190.10 176 280 6.8E-28 T 11-10-2018 APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 Gene3D G3DSA:1.10.10.10 12 100 3.0E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 2.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 2.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 2.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 SUPERFAMILY SSF53850 100 313 2.35E-26 T 11-10-2018 APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 Pfam PF03466 LysR substrate binding domain 98 308 8.5E-22 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_22440 3259d9355c3e157b7c7dd486fcfa8761 319 SUPERFAMILY SSF46785 11 121 9.25E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 SUPERFAMILY SSF52540 356 519 7.42E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 Pfam PF00005 ABC transporter 357 484 1.3E-16 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 Gene3D G3DSA:3.40.50.300 296 532 1.5E-36 T 11-10-2018 APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 SUPERFAMILY SSF52540 19 212 5.65E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 Pfam PF00005 ABC transporter 34 171 1.1E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 Gene3D G3DSA:3.40.50.300 5 272 4.8E-46 T 11-10-2018 APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 SMART SM00382 364 531 2.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24465 1219d484b487e86e9ce802a7565a13ea 550 SMART SM00382 30 216 6.6E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_01200 c50d339eca0b0eb442bf2ccbc5c2bb7f 272 SUPERFAMILY SSF51366 18 271 4.32E-83 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_01200 c50d339eca0b0eb442bf2ccbc5c2bb7f 272 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 18 271 3.7E-113 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 APT56_01200 c50d339eca0b0eb442bf2ccbc5c2bb7f 272 Pfam PF00977 Histidine biosynthesis protein 21 254 2.1E-89 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 APT56_01200 c50d339eca0b0eb442bf2ccbc5c2bb7f 272 Gene3D G3DSA:3.20.20.70 16 272 1.7E-108 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_01200 c50d339eca0b0eb442bf2ccbc5c2bb7f 272 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 17 271 48.405 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 APT56_16120 1e4d886daf8554c82c9b447fd8b9501d 612 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 4 611 1.1E-217 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like APT56_16120 1e4d886daf8554c82c9b447fd8b9501d 612 Pfam PF05947 Type VI secretion system, TssF 5 609 2.4E-210 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like APT56_16120 1e4d886daf8554c82c9b447fd8b9501d 612 PIRSF PIRSF028304 1 611 5.3E-193 T 11-10-2018 IPR010272 Type VI secretion system, TssF-like APT56_15890 50fc962e68c08d52e28cf208131dbbac 201 SUPERFAMILY SSF46689 13 86 6.67E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_15890 50fc962e68c08d52e28cf208131dbbac 201 Gene3D G3DSA:1.10.10.60 13 67 2.6E-16 T 11-10-2018 APT56_15890 50fc962e68c08d52e28cf208131dbbac 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 9.5E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_15890 50fc962e68c08d52e28cf208131dbbac 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 9.5E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_15890 50fc962e68c08d52e28cf208131dbbac 201 SUPERFAMILY SSF48498 96 198 5.34E-8 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_15890 50fc962e68c08d52e28cf208131dbbac 201 Gene3D G3DSA:1.10.357.10 68 201 2.1E-14 T 11-10-2018 APT56_15890 50fc962e68c08d52e28cf208131dbbac 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 66 5.3E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_16490 d1664b3cab3d67449b146ff18721777a 490 SUPERFAMILY SSF75304 12 477 2.22E-126 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_16490 d1664b3cab3d67449b146ff18721777a 490 Gene3D G3DSA:3.90.1300.10 11 486 5.6E-136 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_16490 d1664b3cab3d67449b146ff18721777a 490 ProSitePatterns PS00571 Amidases signature. 165 196 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT56_16490 d1664b3cab3d67449b146ff18721777a 490 Pfam PF01425 Amidase 36 467 1.0E-91 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_03870 dbd80aa46d542303cb18e9fd6fe112fd 132 SUPERFAMILY SSF82784 8 121 1.44E-27 T 11-10-2018 IPR036102 OsmC/Ohr superfamily APT56_03870 dbd80aa46d542303cb18e9fd6fe112fd 132 Gene3D G3DSA:3.30.300.20 2 129 3.8E-24 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_03870 dbd80aa46d542303cb18e9fd6fe112fd 132 Pfam PF02566 OsmC-like protein 32 124 6.6E-16 T 11-10-2018 IPR003718 OsmC/Ohr family APT56_21410 e7ec79ff7c9e3be0c86e51f6c4386e26 430 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 388 9.3E-124 T 11-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 APT56_21410 e7ec79ff7c9e3be0c86e51f6c4386e26 430 Gene3D G3DSA:3.10.580.10 267 400 2.1E-7 T 11-10-2018 APT56_21410 e7ec79ff7c9e3be0c86e51f6c4386e26 430 Pfam PF00005 ABC transporter 43 191 8.0E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21410 e7ec79ff7c9e3be0c86e51f6c4386e26 430 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21410 e7ec79ff7c9e3be0c86e51f6c4386e26 430 Gene3D G3DSA:3.40.50.300 27 266 1.9E-70 T 11-10-2018 APT56_21410 e7ec79ff7c9e3be0c86e51f6c4386e26 430 SMART SM00382 52 240 3.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21410 e7ec79ff7c9e3be0c86e51f6c4386e26 430 SUPERFAMILY SSF54631 275 391 2.93E-11 T 11-10-2018 APT56_21410 e7ec79ff7c9e3be0c86e51f6c4386e26 430 SUPERFAMILY SSF52540 42 270 1.1E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 1.0E-15 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 150 174 1.0E-15 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 1.0E-15 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 SUPERFAMILY SSF51735 146 265 2.79E-5 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 273 3.0E-18 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.5E-18 T 11-10-2018 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 270 3.5E-18 T 11-10-2018 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 3.5E-18 T 11-10-2018 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 3.5E-18 T 11-10-2018 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 220 236 3.5E-18 T 11-10-2018 APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 Gene3D G3DSA:3.50.50.60 128 232 2.3E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 SUPERFAMILY SSF51905 1 294 4.45E-35 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02085 33f441511675d7e4d7b8fa00c5b580d2 300 Gene3D G3DSA:3.50.50.60 8 289 2.3E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_11800 4b71adbade2c32c3f31d536baec339bb 83 Pfam PF04226 Transglycosylase associated protein 33 79 1.4E-16 T 11-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 APT56_14480 9a5511ae65e820b34c7cc916779a5d37 402 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 298 304 - T 11-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_14480 9a5511ae65e820b34c7cc916779a5d37 402 PIRSF PIRSF000138 8 402 2.5E-128 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_14480 9a5511ae65e820b34c7cc916779a5d37 402 Pfam PF01070 FMN-dependent dehydrogenase 36 399 8.1E-126 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 APT56_14480 9a5511ae65e820b34c7cc916779a5d37 402 SUPERFAMILY SSF51395 26 397 4.52E-91 T 11-10-2018 APT56_14480 9a5511ae65e820b34c7cc916779a5d37 402 Gene3D G3DSA:3.20.20.70 23 400 1.7E-122 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 310 9.9E-80 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 313 34.103 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 Pfam PF00551 Formyl transferase 2 188 3.3E-41 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 Gene3D G3DSA:3.40.50.170 1 213 4.9E-74 T 11-10-2018 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 140 163 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 SUPERFAMILY SSF53328 1 214 1.57E-63 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 SUPERFAMILY SSF50486 212 311 4.12E-24 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 Gene3D G3DSA:3.10.25.10 214 312 1.7E-23 T 11-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_26515 cab1f9657b6604ceb31989927c52e249 313 Pfam PF02911 Formyl transferase, C-terminal domain 211 309 3.0E-20 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_04970 9081b65e4a67ed5f3564e6ebd3119dda 302 SUPERFAMILY SSF46785 1 82 2.85E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04970 9081b65e4a67ed5f3564e6ebd3119dda 302 Gene3D G3DSA:3.40.190.290 90 295 3.3E-29 T 11-10-2018 APT56_04970 9081b65e4a67ed5f3564e6ebd3119dda 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.6E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04970 9081b65e4a67ed5f3564e6ebd3119dda 302 Gene3D G3DSA:1.10.10.10 1 82 3.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04970 9081b65e4a67ed5f3564e6ebd3119dda 302 SUPERFAMILY SSF53850 91 289 2.35E-26 T 11-10-2018 APT56_04970 9081b65e4a67ed5f3564e6ebd3119dda 302 Pfam PF03466 LysR substrate binding domain 88 288 3.6E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_13345 aec89d83951c17ab87612183ba96f443 250 Pfam PF00005 ABC transporter 17 175 1.3E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13345 aec89d83951c17ab87612183ba96f443 250 Gene3D G3DSA:3.40.50.300 1 250 5.3E-76 T 11-10-2018 APT56_13345 aec89d83951c17ab87612183ba96f443 250 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_13345 aec89d83951c17ab87612183ba96f443 250 SMART SM00382 26 223 1.7E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_13345 aec89d83951c17ab87612183ba96f443 250 SUPERFAMILY SSF52540 1 245 9.25E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_13345 aec89d83951c17ab87612183ba96f443 250 PIRSF PIRSF039085 1 250 1.2E-116 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_22320 c60b8338ced6a4fdb107e888f582147d 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT56_22320 c60b8338ced6a4fdb107e888f582147d 354 Gene3D G3DSA:3.20.20.70 1 354 3.3E-149 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_22320 c60b8338ced6a4fdb107e888f582147d 354 SUPERFAMILY SSF51569 1 328 1.45E-106 T 11-10-2018 APT56_22320 c60b8338ced6a4fdb107e888f582147d 354 PIRSF PIRSF001359 1 329 5.7E-86 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT56_22320 c60b8338ced6a4fdb107e888f582147d 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 327 7.1E-96 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT56_22320 c60b8338ced6a4fdb107e888f582147d 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT56_22320 c60b8338ced6a4fdb107e888f582147d 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 2.7E-188 T 11-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 APT56_22320 c60b8338ced6a4fdb107e888f582147d 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 9.6E-102 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APT56_27070 4b2caf1c904a55f67c225bdd9a77f816 280 SUPERFAMILY SSF51730 3 279 2.35E-95 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like APT56_27070 4b2caf1c904a55f67c225bdd9a77f816 280 Pfam PF02219 Methylenetetrahydrofolate reductase 4 278 5.2E-90 T 11-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 APT56_27070 4b2caf1c904a55f67c225bdd9a77f816 280 Gene3D G3DSA:3.20.20.220 1 280 2.5E-98 T 11-10-2018 APT56_27070 4b2caf1c904a55f67c225bdd9a77f816 280 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 9 278 2.3E-98 T 11-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 APT56_25900 4fcce30989d8320adcbcf3f22be0ae01 345 Pfam PF00682 HMGL-like 33 313 9.6E-71 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT56_25900 4fcce30989d8320adcbcf3f22be0ae01 345 Gene3D G3DSA:3.20.20.70 13 335 1.1E-120 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_25900 4fcce30989d8320adcbcf3f22be0ae01 345 SUPERFAMILY SSF51569 22 328 1.06E-91 T 11-10-2018 APT56_25900 4fcce30989d8320adcbcf3f22be0ae01 345 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 243 256 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT56_06875 a0760d400691ac90c0eaa9c0471ccb82 427 SUPERFAMILY SSF103473 24 422 2.09E-29 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_06875 a0760d400691ac90c0eaa9c0471ccb82 427 Pfam PF07690 Major Facilitator Superfamily 26 335 8.6E-10 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_06875 a0760d400691ac90c0eaa9c0471ccb82 427 Gene3D G3DSA:1.20.1250.20 23 413 1.7E-22 T 11-10-2018 APT56_00005 79b4a81e1baa95815e1d86ed343c179d 617 Gene3D G3DSA:2.40.50.100 354 417 2.6E-68 T 11-10-2018 APT56_00005 79b4a81e1baa95815e1d86ed343c179d 617 Gene3D G3DSA:1.10.1790.20 338 516 2.6E-68 T 11-10-2018 APT56_00005 79b4a81e1baa95815e1d86ed343c179d 617 Gene3D G3DSA:2.40.50.100 151 226 5.6E-27 T 11-10-2018 APT56_00005 79b4a81e1baa95815e1d86ed343c179d 617 Gene3D G3DSA:2.40.50.100 227 329 2.8E-29 T 11-10-2018 APT56_00005 79b4a81e1baa95815e1d86ed343c179d 617 Pfam PF04998 RNA polymerase Rpb1, domain 5 1 518 2.6E-56 T 11-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APT56_00005 79b4a81e1baa95815e1d86ed343c179d 617 SUPERFAMILY SSF64484 1 566 5.86E-126 T 11-10-2018 APT56_00005 79b4a81e1baa95815e1d86ed343c179d 617 Gene3D G3DSA:1.10.150.390 518 579 1.3E-28 T 11-10-2018 APT56_01720 82004501f076dd2afa3bf10bd78cfc0f 686 PIRSF PIRSF015380 1 685 1.3E-219 T 11-10-2018 IPR011385 Putative site-specific recombinase Gcr APT56_01720 82004501f076dd2afa3bf10bd78cfc0f 686 Pfam PF10136 Site-specific recombinase 34 677 5.4E-231 T 11-10-2018 IPR011385 Putative site-specific recombinase Gcr APT56_20865 85f1dd6b39d58abf598ea997a20af751 324 SUPERFAMILY SSF161098 89 306 2.75E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20865 85f1dd6b39d58abf598ea997a20af751 324 Gene3D G3DSA:1.10.3720.10 83 315 1.7E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20865 85f1dd6b39d58abf598ea997a20af751 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 1.9E-41 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_18585 b4678abbabbef6304a47324bf1f4c738 191 Gene3D G3DSA:3.40.630.30 10 183 3.6E-40 T 11-10-2018 APT56_18585 b4678abbabbef6304a47324bf1f4c738 191 Pfam PF13302 Acetyltransferase (GNAT) domain 20 155 1.9E-25 T 11-10-2018 IPR000182 GNAT domain APT56_18585 b4678abbabbef6304a47324bf1f4c738 191 SUPERFAMILY SSF55729 20 180 2.2E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 SUPERFAMILY SSF52317 5 203 1.62E-31 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 Gene3D G3DSA:1.10.10.60 271 324 1.2E-14 T 11-10-2018 APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 Gene3D G3DSA:3.40.50.880 5 207 1.7E-37 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 Gene3D G3DSA:1.10.10.60 212 270 9.1E-12 T 11-10-2018 APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 SUPERFAMILY SSF46689 273 323 1.75E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 SMART SM00342 237 320 2.8E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 SUPERFAMILY SSF46689 220 271 8.96E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 Pfam PF12833 Helix-turn-helix domain 243 322 1.1E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_18945 4b0343c5afe41f2ea147af36c759a52b 324 Pfam PF01965 DJ-1/PfpI family 53 182 3.8E-9 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_08300 8548a8b8b9d0597e90b94024cc40edcd 539 Pfam PF07219 HemY protein N-terminus 26 133 1.9E-27 T 11-10-2018 IPR010817 HemY, N-terminal APT56_08300 8548a8b8b9d0597e90b94024cc40edcd 539 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 390 2.5E-86 T 11-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 APT56_08300 8548a8b8b9d0597e90b94024cc40edcd 539 Gene3D G3DSA:1.25.40.10 160 404 1.0E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_08300 8548a8b8b9d0597e90b94024cc40edcd 539 SUPERFAMILY SSF48452 243 392 2.58E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07725 f97f9e1f96fced907580d1127a72fbae 243 SUPERFAMILY SSF55811 69 229 1.76E-36 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_07725 f97f9e1f96fced907580d1127a72fbae 243 Gene3D G3DSA:3.90.79.10 53 234 5.0E-49 T 11-10-2018 APT56_07725 f97f9e1f96fced907580d1127a72fbae 243 Pfam PF00293 NUDIX domain 78 158 5.6E-15 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_01510 744cf28239ad9603345ee3cbff2db5cb 169 SUPERFAMILY SSF50475 9 162 1.57E-48 T 11-10-2018 APT56_01510 744cf28239ad9603345ee3cbff2db5cb 169 Pfam PF01613 Flavin reductase like domain 18 163 1.3E-39 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_01510 744cf28239ad9603345ee3cbff2db5cb 169 SMART SM00903 17 162 1.1E-58 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_01510 744cf28239ad9603345ee3cbff2db5cb 169 Gene3D G3DSA:2.30.110.10 5 168 1.4E-55 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_14385 2a65a4d9fc009e3426600ee8da0b1ec0 238 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 140 220 1.1E-13 T 11-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 APT56_24675 86179c648b530974e613afd2754bd224 425 SUPERFAMILY SSF52413 301 417 6.67E-30 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 APT56_24675 86179c648b530974e613afd2754bd224 425 Gene3D G3DSA:3.40.50.720 2 199 1.6E-59 T 11-10-2018 APT56_24675 86179c648b530974e613afd2754bd224 425 SUPERFAMILY SSF48179 201 293 5.27E-25 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_24675 86179c648b530974e613afd2754bd224 425 SMART SM00984 318 418 1.0E-36 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_24675 86179c648b530974e613afd2754bd224 425 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 8 411 5.9E-122 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT56_24675 86179c648b530974e613afd2754bd224 425 SUPERFAMILY SSF51735 8 192 5.33E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_24675 86179c648b530974e613afd2754bd224 425 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 203 291 4.1E-24 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_24675 86179c648b530974e613afd2754bd224 425 PIRSF PIRSF500136 2 425 4.3E-153 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 APT56_24675 86179c648b530974e613afd2754bd224 425 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 318 417 1.5E-20 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_24675 86179c648b530974e613afd2754bd224 425 PIRSF PIRSF000124 7 422 2.5E-55 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APT56_24675 86179c648b530974e613afd2754bd224 425 Gene3D G3DSA:3.40.50.720 202 424 6.1E-57 T 11-10-2018 APT56_24675 86179c648b530974e613afd2754bd224 425 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 8 181 5.8E-34 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.1E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 Gene3D G3DSA:3.40.190.290 90 293 3.2E-56 T 11-10-2018 APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 Pfam PF03466 LysR substrate binding domain 88 289 1.6E-48 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 SUPERFAMILY SSF53850 90 292 7.45E-44 T 11-10-2018 APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 SUPERFAMILY SSF46785 1 111 4.77E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04015 b38cd58a23c0ceeecd5d456b7f98e58c 295 Gene3D G3DSA:1.10.10.10 1 88 1.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06050 a5a8cb1ef77d2b9a55abac1c78710329 199 SUPERFAMILY SSF55469 5 199 1.7E-68 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT56_06050 a5a8cb1ef77d2b9a55abac1c78710329 199 Pfam PF00881 Nitroreductase family 10 177 6.8E-15 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 APT56_06050 a5a8cb1ef77d2b9a55abac1c78710329 199 Gene3D G3DSA:3.40.109.10 2 199 1.9E-82 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APT56_21090 7168a8dcf84345c44425fb53a35d08f1 394 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 APT56_21090 7168a8dcf84345c44425fb53a35d08f1 394 Gene3D G3DSA:3.90.1150.10 43 386 3.1E-123 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_21090 7168a8dcf84345c44425fb53a35d08f1 394 Pfam PF00155 Aminotransferase class I and II 43 388 2.8E-58 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_21090 7168a8dcf84345c44425fb53a35d08f1 394 Gene3D G3DSA:3.40.640.10 58 295 3.1E-123 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_21090 7168a8dcf84345c44425fb53a35d08f1 394 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 21 389 2.0E-129 T 11-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 APT56_21090 7168a8dcf84345c44425fb53a35d08f1 394 SUPERFAMILY SSF53383 15 393 4.08E-99 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_12765 0fd14e6f47220bcce6bd654ecdafc5db 232 Gene3D G3DSA:3.30.1060.10 35 214 3.0E-61 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_12765 0fd14e6f47220bcce6bd654ecdafc5db 232 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 50 200 6.8E-51 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_12765 0fd14e6f47220bcce6bd654ecdafc5db 232 Pfam PF01625 Peptide methionine sulfoxide reductase 51 203 6.4E-57 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_12765 0fd14e6f47220bcce6bd654ecdafc5db 232 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 49 209 35.637 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_12765 0fd14e6f47220bcce6bd654ecdafc5db 232 SUPERFAMILY SSF55068 41 213 2.22E-66 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APT56_17755 78eba12fbf0d0a9a15f3c98842e4f12d 187 SUPERFAMILY SSF48452 11 183 3.26E-63 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_17755 78eba12fbf0d0a9a15f3c98842e4f12d 187 Gene3D G3DSA:1.20.58.320 7 87 1.3E-27 T 11-10-2018 APT56_17755 78eba12fbf0d0a9a15f3c98842e4f12d 187 Gene3D G3DSA:1.25.40.10 88 187 6.9E-35 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_17755 78eba12fbf0d0a9a15f3c98842e4f12d 187 Pfam PF06041 Bacterial protein of unknown function (DUF924) 17 184 3.7E-53 T 11-10-2018 IPR010323 Protein of unknown function DUF924 APT56_04820 4e2b408b11acae5467907ddf15ac851c 160 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 90 101 - T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APT56_04820 4e2b408b11acae5467907ddf15ac851c 160 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 7 135 3.6E-39 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APT56_04820 4e2b408b11acae5467907ddf15ac851c 160 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 8 135 1.7E-34 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APT56_04820 4e2b408b11acae5467907ddf15ac851c 160 SUPERFAMILY SSF55083 6 145 2.49E-47 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APT56_04820 4e2b408b11acae5467907ddf15ac851c 160 Gene3D G3DSA:3.30.70.560 5 159 9.9E-48 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APT56_18590 20c6f0b551ebd11cad63d7195f7cfd56 217 SUPERFAMILY SSF47616 74 203 3.06E-27 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_18590 20c6f0b551ebd11cad63d7195f7cfd56 217 Gene3D G3DSA:3.40.30.10 5 85 9.2E-30 T 11-10-2018 APT56_18590 20c6f0b551ebd11cad63d7195f7cfd56 217 Pfam PF00043 Glutathione S-transferase, C-terminal domain 115 198 3.3E-10 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_18590 20c6f0b551ebd11cad63d7195f7cfd56 217 SUPERFAMILY SSF52833 2 86 7.78E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_18590 20c6f0b551ebd11cad63d7195f7cfd56 217 Pfam PF13417 Glutathione S-transferase, N-terminal domain 9 81 2.2E-14 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_18590 20c6f0b551ebd11cad63d7195f7cfd56 217 Gene3D G3DSA:1.20.1050.10 86 204 8.4E-40 T 11-10-2018 APT56_16500 ba19cca32a654d0b37d1e57eb33de264 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 8.6E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16500 ba19cca32a654d0b37d1e57eb33de264 294 Gene3D G3DSA:1.10.10.10 3 86 3.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16500 ba19cca32a654d0b37d1e57eb33de264 294 Gene3D G3DSA:3.40.190.10 91 289 3.4E-61 T 11-10-2018 APT56_16500 ba19cca32a654d0b37d1e57eb33de264 294 Pfam PF03466 LysR substrate binding domain 88 291 1.4E-42 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16500 ba19cca32a654d0b37d1e57eb33de264 294 SUPERFAMILY SSF53850 90 292 5.61E-43 T 11-10-2018 APT56_16500 ba19cca32a654d0b37d1e57eb33de264 294 SUPERFAMILY SSF46785 5 86 1.79E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16500 ba19cca32a654d0b37d1e57eb33de264 294 Gene3D G3DSA:3.40.190.10 161 263 3.4E-61 T 11-10-2018 APT56_10900 5476bea2a0df3dee6675f26df2b0b9e6 355 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 304 347 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_10900 5476bea2a0df3dee6675f26df2b0b9e6 355 SMART SM00342 267 351 1.4E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_10900 5476bea2a0df3dee6675f26df2b0b9e6 355 Pfam PF14525 AraC-binding-like domain 53 230 7.9E-43 T 11-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like APT56_10900 5476bea2a0df3dee6675f26df2b0b9e6 355 Gene3D G3DSA:1.10.10.60 251 354 1.3E-34 T 11-10-2018 APT56_10900 5476bea2a0df3dee6675f26df2b0b9e6 355 SUPERFAMILY SSF46689 251 301 3.71E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_10900 5476bea2a0df3dee6675f26df2b0b9e6 355 Pfam PF12833 Helix-turn-helix domain 273 352 1.0E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_10900 5476bea2a0df3dee6675f26df2b0b9e6 355 SUPERFAMILY SSF46689 303 353 1.84E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02835 79b06e815b56692aecaa3e56207d7ce7 334 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 331 3.0E-74 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02835 79b06e815b56692aecaa3e56207d7ce7 334 Gene3D G3DSA:3.40.190.150 38 324 4.4E-97 T 11-10-2018 APT56_02835 79b06e815b56692aecaa3e56207d7ce7 334 PIRSF PIRSF017082 2 334 7.2E-72 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02835 79b06e815b56692aecaa3e56207d7ce7 334 SUPERFAMILY SSF53850 125 297 2.08E-13 T 11-10-2018 APT56_02835 79b06e815b56692aecaa3e56207d7ce7 334 Gene3D G3DSA:3.40.190.10 136 259 4.4E-97 T 11-10-2018 APT56_18880 5d919c3629afe1c59ad9bae3e9fc6a3f 279 Gene3D G3DSA:3.40.190.10 40 276 8.8E-89 T 11-10-2018 APT56_18880 5d919c3629afe1c59ad9bae3e9fc6a3f 279 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 34 276 4.2E-71 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_18880 5d919c3629afe1c59ad9bae3e9fc6a3f 279 PIRSF PIRSF002854 2 279 8.0E-91 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_18880 5d919c3629afe1c59ad9bae3e9fc6a3f 279 Pfam PF03180 NLPA lipoprotein 40 279 1.0E-82 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_18880 5d919c3629afe1c59ad9bae3e9fc6a3f 279 Gene3D G3DSA:3.40.190.10 121 228 8.8E-89 T 11-10-2018 APT56_18880 5d919c3629afe1c59ad9bae3e9fc6a3f 279 SUPERFAMILY SSF53850 40 279 1.27E-77 T 11-10-2018 APT56_05355 b867e8bdf9e972fc6f7c94f346edb548 281 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 267 5.7E-108 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 APT56_05355 b867e8bdf9e972fc6f7c94f346edb548 281 SUPERFAMILY SSF53448 2 271 6.28E-67 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_05355 b867e8bdf9e972fc6f7c94f346edb548 281 Gene3D G3DSA:3.90.550.10 1 278 9.9E-85 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_05355 b867e8bdf9e972fc6f7c94f346edb548 281 Pfam PF00483 Nucleotidyl transferase 11 269 2.4E-30 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT56_00080 7d605737c12f0ff27e3691a58d18a4f1 461 SUPERFAMILY SSF55931 120 459 3.14E-104 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT56_00080 7d605737c12f0ff27e3691a58d18a4f1 461 Pfam PF00120 Glutamine synthetase, catalytic domain 121 457 1.2E-96 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT56_00080 7d605737c12f0ff27e3691a58d18a4f1 461 Gene3D G3DSA:3.30.590.10 118 461 2.5E-107 T 11-10-2018 APT56_00080 7d605737c12f0ff27e3691a58d18a4f1 461 SMART SM01230 120 376 2.7E-92 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APT56_21920 4519985ed38ff4bf200a5afe091d4ff2 441 SUPERFAMILY SSF53850 22 312 4.94E-47 T 11-10-2018 APT56_21920 4519985ed38ff4bf200a5afe091d4ff2 441 Gene3D G3DSA:3.40.190.10 131 247 5.8E-44 T 11-10-2018 APT56_21920 4519985ed38ff4bf200a5afe091d4ff2 441 Gene3D G3DSA:3.40.190.10 29 284 5.8E-44 T 11-10-2018 APT56_21920 4519985ed38ff4bf200a5afe091d4ff2 441 Pfam PF13343 Bacterial extracellular solute-binding protein 75 282 4.1E-21 T 11-10-2018 APT56_14415 2dc37951176d8d2e8a43488e976b1431 375 Gene3D G3DSA:3.20.20.70 21 371 2.9E-156 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_14415 2dc37951176d8d2e8a43488e976b1431 375 PIRSF PIRSF001361 14 373 2.3E-160 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APT56_14415 2dc37951176d8d2e8a43488e976b1431 375 Pfam PF00793 DAHP synthetase I family 60 355 3.3E-99 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT56_14415 2dc37951176d8d2e8a43488e976b1431 375 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 26 370 1.6E-153 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APT56_14415 2dc37951176d8d2e8a43488e976b1431 375 SUPERFAMILY SSF51569 27 369 5.95E-132 T 11-10-2018 APT56_02655 3df3f8c82db5b9c5da3fc78e08d47872 292 Gene3D G3DSA:1.10.620.20 6 228 1.8E-13 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 APT56_02655 3df3f8c82db5b9c5da3fc78e08d47872 292 SUPERFAMILY SSF47240 12 277 3.75E-44 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_15515 ff3e1527dc79eb7b75bea63af77303ff 144 Pfam PF13620 Carboxypeptidase regulatory-like domain 78 141 3.6E-7 T 11-10-2018 APT56_15515 ff3e1527dc79eb7b75bea63af77303ff 144 Gene3D G3DSA:2.60.40.1120 73 144 3.7E-5 T 11-10-2018 APT56_19880 5e48ba6db3e6db70d7355be2c0deff8b 284 Pfam PF00459 Inositol monophosphatase family 17 262 9.4E-42 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_19880 5e48ba6db3e6db70d7355be2c0deff8b 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 222 246 1.1E-18 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_19880 5e48ba6db3e6db70d7355be2c0deff8b 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 45 65 1.1E-18 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_19880 5e48ba6db3e6db70d7355be2c0deff8b 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 94 110 1.1E-18 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_19880 5e48ba6db3e6db70d7355be2c0deff8b 284 PRINTS PR00377 Inositol monophosphatase superfamily signature 67 83 1.1E-18 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_19880 5e48ba6db3e6db70d7355be2c0deff8b 284 SUPERFAMILY SSF56655 11 274 2.88E-58 T 11-10-2018 APT56_19880 5e48ba6db3e6db70d7355be2c0deff8b 284 Gene3D G3DSA:3.30.540.10 4 154 6.5E-36 T 11-10-2018 APT56_19880 5e48ba6db3e6db70d7355be2c0deff8b 284 Gene3D G3DSA:3.40.190.80 173 281 8.6E-15 T 11-10-2018 APT56_25830 5d3d4ae73fbe647ded2fa4a3851830a4 266 SUPERFAMILY SSF53223 3 106 7.48E-25 T 11-10-2018 APT56_25830 5d3d4ae73fbe647ded2fa4a3851830a4 266 Gene3D G3DSA:3.40.50.720 108 247 9.6E-71 T 11-10-2018 APT56_25830 5d3d4ae73fbe647ded2fa4a3851830a4 266 Gene3D G3DSA:3.40.50.10860 7 107 9.6E-71 T 11-10-2018 APT56_25830 5d3d4ae73fbe647ded2fa4a3851830a4 266 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 13 95 1.2E-18 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APT56_25830 5d3d4ae73fbe647ded2fa4a3851830a4 266 SUPERFAMILY SSF51735 108 251 2.18E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_03560 7d5a89c84e98dffee7eda00ba0b1f78b 391 Pfam PF11340 Protein of unknown function (DUF3142) 74 298 2.2E-86 T 11-10-2018 IPR021488 Protein of unknown function DUF3142 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 274 39.38 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 SMART SM00898 2 115 1.4E-45 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 Gene3D G3DSA:1.10.8.50 143 274 1.5E-43 T 11-10-2018 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 ProSitePatterns PS01242 Zinc finger FPG-type signature. 249 273 - T 11-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 SMART SM01232 133 225 2.0E-39 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 273 3.5E-82 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 1.4E-27 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 133 222 6.9E-20 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 Pfam PF06827 Zinc finger found in FPG and IleRS 246 274 1.5E-12 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 Gene3D G3DSA:3.20.190.10 2 126 3.3E-32 T 11-10-2018 IPR035937 MutM-like, N-terminal APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 SUPERFAMILY SSF81624 2 142 6.8E-38 T 11-10-2018 IPR035937 MutM-like, N-terminal APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 SUPERFAMILY SSF46946 134 225 1.1E-25 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 APT56_24525 6eb2f3a0b14ee75b7513d06a18d28b0a 275 SUPERFAMILY SSF57716 221 274 3.33E-16 T 11-10-2018 APT56_01790 eea7f89ff0bb51d29fffa4bea9365af7 159 Gene3D G3DSA:3.30.450.150 1 143 5.1E-39 T 11-10-2018 IPR038084 GlcG-like domain superfamily APT56_01790 eea7f89ff0bb51d29fffa4bea9365af7 159 SUPERFAMILY SSF143744 2 140 1.15E-33 T 11-10-2018 IPR038084 GlcG-like domain superfamily APT56_01790 eea7f89ff0bb51d29fffa4bea9365af7 159 Pfam PF03928 Haem-degrading 7 137 7.8E-26 T 11-10-2018 IPR005624 Haem-degrading APT56_13225 d9030f3867c4ec5d32e45a790748dfb7 372 SUPERFAMILY SSF63825 74 341 6.28E-24 T 11-10-2018 APT56_13225 d9030f3867c4ec5d32e45a790748dfb7 372 Gene3D G3DSA:2.130.10.10 45 189 1.9E-10 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_13225 d9030f3867c4ec5d32e45a790748dfb7 372 Gene3D G3DSA:2.130.10.10 198 364 1.1E-10 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_21020 ca0f70880cf1ef5e3e800f9b9a8856db 390 SMART SM00922 158 261 6.4E-24 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal APT56_21020 ca0f70880cf1ef5e3e800f9b9a8856db 390 SUPERFAMILY SSF54826 1 143 1.7E-34 T 11-10-2018 APT56_21020 ca0f70880cf1ef5e3e800f9b9a8856db 390 Gene3D G3DSA:3.20.20.120 137 384 9.0E-181 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_21020 ca0f70880cf1ef5e3e800f9b9a8856db 390 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 39 139 7.4E-22 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain APT56_21020 ca0f70880cf1ef5e3e800f9b9a8856db 390 SUPERFAMILY SSF51604 127 386 1.7E-68 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_21020 ca0f70880cf1ef5e3e800f9b9a8856db 390 Gene3D G3DSA:3.30.390.10 3 136 9.0E-181 T 11-10-2018 IPR029017 Enolase-like, N-terminal APT56_21020 ca0f70880cf1ef5e3e800f9b9a8856db 390 Pfam PF13378 Enolase C-terminal domain-like 161 381 9.5E-54 T 11-10-2018 IPR029065 Enolase C-terminal domain-like APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 SUPERFAMILY SSF53850 90 286 1.21E-33 T 11-10-2018 APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 SUPERFAMILY SSF46785 1 112 6.22E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 Gene3D G3DSA:1.10.10.10 1 89 6.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 Gene3D G3DSA:3.40.190.290 92 289 3.9E-37 T 11-10-2018 APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 2.2E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16005 c33eea9bb43984825e2582ced5e277fd 291 Pfam PF03466 LysR substrate binding domain 88 286 3.5E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_12955 8e425f3ce1d1e1689f0bc44f44da3054 296 Pfam PF01136 Peptidase family U32 112 247 7.0E-11 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 APT56_01980 e75849083db4f824c0bf0307286c28bf 353 Gene3D G3DSA:3.30.1330.10 4 167 7.2E-49 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_01980 e75849083db4f824c0bf0307286c28bf 353 Gene3D G3DSA:3.90.650.10 169 351 7.3E-51 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_01980 e75849083db4f824c0bf0307286c28bf 353 Pfam PF02769 AIR synthase related protein, C-terminal domain 174 347 1.2E-29 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APT56_01980 e75849083db4f824c0bf0307286c28bf 353 TIGRFAM TIGR00476 selD: selenide, water dikinase 12 321 3.3E-133 T 11-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 APT56_01980 e75849083db4f824c0bf0307286c28bf 353 SUPERFAMILY SSF56042 169 349 8.82E-48 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_01980 e75849083db4f824c0bf0307286c28bf 353 Pfam PF00586 AIR synthase related protein, N-terminal domain 55 162 1.0E-19 T 11-10-2018 IPR016188 PurM-like, N-terminal domain APT56_01980 e75849083db4f824c0bf0307286c28bf 353 SUPERFAMILY SSF55326 12 167 1.23E-40 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_01980 e75849083db4f824c0bf0307286c28bf 353 Hamap MF_00625 Selenide, water dikinase [selD]. 10 353 44.663 T 11-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 APT56_01980 e75849083db4f824c0bf0307286c28bf 353 PIRSF PIRSF036407 6 352 1.4E-117 T 11-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 APT56_08455 f6face1100a4652b23b6f0f7d2fa9ee9 105 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 11 94 2.8E-35 T 11-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APT56_13455 96f55ac19a2657d02316d1622fa5ad3d 373 Gene3D G3DSA:3.40.50.1980 26 370 2.0E-92 T 11-10-2018 APT56_13455 96f55ac19a2657d02316d1622fa5ad3d 373 Pfam PF01497 Periplasmic binding protein 87 315 5.6E-21 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APT56_13455 96f55ac19a2657d02316d1622fa5ad3d 373 SUPERFAMILY SSF53807 29 361 5.1E-50 T 11-10-2018 APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 702 738 1.5E-5 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 524 559 0.0028 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 450 477 2.8 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 918 942 0.65 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 377 417 0.023 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 310 348 0.0037 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 786 824 2.2E-7 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 659 698 2.0E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1501 1539 0.044 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 567 598 1.1E-4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 478 519 6.1E-4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 620 658 0.28 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 866 904 0.55 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 423 457 0.024 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 539 578 0.074 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 826 864 5.1E-4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 579 617 5.1E-6 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 63 159 1.5E-21 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_00755 7d28817dae1eda92369db03294d683ba 2833 SMART SM00912 44 164 7.5E-39 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Gene3D G3DSA:2.160.20.10 35 308 5.2E-94 T 11-10-2018 IPR012334 Pectin lyase fold APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF13332 Haemagluttinin repeat 1652 1792 1.8E-11 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF13332 Haemagluttinin repeat 1597 1651 0.0011 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF13332 Haemagluttinin repeat 1965 2143 3.0E-36 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05860 haemagglutination activity domain 43 161 7.3E-32 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05594 Haemagluttinin repeat 365 434 2.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05594 Haemagluttinin repeat 647 718 0.0015 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05594 Haemagluttinin repeat 1490 1556 0.0095 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05594 Haemagluttinin repeat 582 638 3.1E-4 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05594 Haemagluttinin repeat 778 836 0.004 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05594 Haemagluttinin repeat 271 330 0.061 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05594 Haemagluttinin repeat 470 519 3.4 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 Pfam PF05594 Haemagluttinin repeat 211 270 0.18 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APT56_00755 7d28817dae1eda92369db03294d683ba 2833 SUPERFAMILY SSF51126 44 289 1.85E-35 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_05465 2bd2b9ce63e242587b2d7775279f51b4 193 Gene3D G3DSA:2.20.70.10 14 50 2.2E-18 T 11-10-2018 APT56_05465 2bd2b9ce63e242587b2d7775279f51b4 193 Gene3D G3DSA:3.90.79.10 51 192 6.0E-36 T 11-10-2018 APT56_05465 2bd2b9ce63e242587b2d7775279f51b4 193 ProSitePatterns PS00893 Nudix box signature. 85 106 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APT56_05465 2bd2b9ce63e242587b2d7775279f51b4 193 Pfam PF14803 Nudix N-terminal 17 50 5.8E-18 T 11-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 APT56_05465 2bd2b9ce63e242587b2d7775279f51b4 193 SUPERFAMILY SSF55811 17 178 3.11E-39 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_05465 2bd2b9ce63e242587b2d7775279f51b4 193 Pfam PF00293 NUDIX domain 53 156 1.7E-12 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 Gene3D G3DSA:3.30.9.20 40 256 3.5E-125 T 11-10-2018 APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 SUPERFAMILY SSF51395 412 764 3.95E-116 T 11-10-2018 APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 SUPERFAMILY SSF51905 1 358 7.22E-37 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.4E-8 T 11-10-2018 APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 279 294 1.4E-8 T 11-10-2018 APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 310 1.4E-8 T 11-10-2018 APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 131 146 1.4E-8 T 11-10-2018 APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 Gene3D G3DSA:3.50.50.60 3 353 3.5E-125 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 Gene3D G3DSA:3.20.20.70 412 765 1.1E-115 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_03060 713bc7a7829cb770c6c2cd7e005a8f89 783 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 415 744 8.1E-63 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 Pfam PF03466 LysR substrate binding domain 87 286 1.8E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 Gene3D G3DSA:3.40.190.10 163 267 3.3E-64 T 11-10-2018 APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 Gene3D G3DSA:3.40.190.10 94 287 3.3E-64 T 11-10-2018 APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 Gene3D G3DSA:1.10.10.10 1 92 2.8E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 SUPERFAMILY SSF53850 93 288 1.63E-34 T 11-10-2018 APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.2E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.2E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.2E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 7.9E-27 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13075 2e09a2d2efc57a20ee3a966e2b874abc 294 SUPERFAMILY SSF46785 1 110 7.27E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_09225 73b8a00808e509e5fef6d05872b24d67 507 Gene3D G3DSA:3.40.50.300 4 83 7.9E-9 T 11-10-2018 APT56_09225 73b8a00808e509e5fef6d05872b24d67 507 Pfam PF05872 Bacterial protein of unknown function (DUF853) 5 504 9.5E-234 T 11-10-2018 IPR033186 Helicase HerA-like C-terminal APT56_09225 73b8a00808e509e5fef6d05872b24d67 507 SUPERFAMILY SSF52540 15 379 1.66E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09225 73b8a00808e509e5fef6d05872b24d67 507 Gene3D G3DSA:3.40.50.300 202 376 2.3E-20 T 11-10-2018 APT56_27585 1ec0a046f7cdae6056bb59a66abc9626 815 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 85 735 5.3E-178 T 11-10-2018 APT56_27585 1ec0a046f7cdae6056bb59a66abc9626 815 Gene3D G3DSA:1.10.3810.10 69 266 8.5E-74 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_27585 1ec0a046f7cdae6056bb59a66abc9626 815 Gene3D G3DSA:3.40.710.10 383 760 2.3E-106 T 11-10-2018 APT56_27585 1ec0a046f7cdae6056bb59a66abc9626 815 SUPERFAMILY SSF53955 62 271 1.07E-73 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_27585 1ec0a046f7cdae6056bb59a66abc9626 815 Pfam PF17092 Penicillin-binding protein OB-like domain 340 448 9.4E-16 T 11-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_27585 1ec0a046f7cdae6056bb59a66abc9626 815 Pfam PF00912 Transglycosylase 76 249 3.1E-61 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_27585 1ec0a046f7cdae6056bb59a66abc9626 815 SUPERFAMILY SSF56601 231 758 2.82E-117 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_27585 1ec0a046f7cdae6056bb59a66abc9626 815 Pfam PF00905 Penicillin binding protein transpeptidase domain 451 726 3.1E-40 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT56_11900 02adfeb8ab59923f68bef1fd9314585b 329 Gene3D G3DSA:3.30.1330.60 113 299 2.8E-56 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_11900 02adfeb8ab59923f68bef1fd9314585b 329 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 13 65 5.1E-19 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain APT56_11900 02adfeb8ab59923f68bef1fd9314585b 329 Pfam PF00691 OmpA family 166 254 3.7E-11 T 11-10-2018 IPR006665 OmpA-like domain APT56_11900 02adfeb8ab59923f68bef1fd9314585b 329 SUPERFAMILY SSF103088 159 270 1.83E-19 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_26540 e2c50d733be414cf7f6edf698ccac581 338 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 56 69 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_26540 e2c50d733be414cf7f6edf698ccac581 338 SMART SM00062 33 263 7.3E-48 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_26540 e2c50d733be414cf7f6edf698ccac581 338 SUPERFAMILY SSF53850 24 257 7.81E-48 T 11-10-2018 APT56_26540 e2c50d733be414cf7f6edf698ccac581 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 253 1.9E-31 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_26540 e2c50d733be414cf7f6edf698ccac581 338 Gene3D G3DSA:3.40.190.10 23 253 5.5E-50 T 11-10-2018 APT56_26540 e2c50d733be414cf7f6edf698ccac581 338 Gene3D G3DSA:3.40.190.10 125 221 5.5E-50 T 11-10-2018 APT56_09395 67a593754c0e2a27262db994b412733b 134 SUPERFAMILY SSF51182 1 128 6.68E-22 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_09395 67a593754c0e2a27262db994b412733b 134 Hamap MF_01255 L-ectoine synthase [ectC]. 1 128 39.389 T 11-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 APT56_09395 67a593754c0e2a27262db994b412733b 134 Pfam PF06339 Ectoine synthase 1 126 1.2E-56 T 11-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 APT56_09395 67a593754c0e2a27262db994b412733b 134 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 1 118 8.0E-63 T 11-10-2018 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108 APT56_09395 67a593754c0e2a27262db994b412733b 134 Gene3D G3DSA:2.60.120.10 1 116 3.8E-45 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 SUPERFAMILY SSF46785 15 86 5.03E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 Gene3D G3DSA:3.40.1410.10 101 236 5.7E-39 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 Gene3D G3DSA:1.10.10.10 17 87 1.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 SMART SM00866 103 240 4.1E-37 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 SUPERFAMILY SSF64288 70 243 4.87E-46 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 Pfam PF07702 UTRA domain 103 240 4.2E-38 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 SMART SM00345 23 82 2.4E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 3.0E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 3.0E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 18 246 8.5E-106 T 11-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 APT56_01655 18cb0cb10e91a3a6c16a0e8be4c18953 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 1.2E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_22165 9c022296c1eadcd7779a904a35cce091 540 Gene3D G3DSA:3.90.1340.10 235 316 1.8E-8 T 11-10-2018 IPR037053 Phage tail collar domain superfamily APT56_22165 9c022296c1eadcd7779a904a35cce091 540 SUPERFAMILY SSF88874 233 413 2.75E-9 T 11-10-2018 APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 ProSitePatterns PS01053 Arginase family signature. 244 265 - T 11-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 Hamap MF_00737 Formimidoylglutamase [hutG]. 6 315 40.821 T 11-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 PRINTS PR00116 Arginase signature 241 270 4.2E-5 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 PRINTS PR00116 Arginase signature 122 137 4.2E-5 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 Pfam PF00491 Arginase family 44 313 2.3E-57 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 TIGRFAM TIGR01227 hutG: formimidoylglutamase 11 314 5.1E-85 T 11-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 SUPERFAMILY SSF52768 11 315 8.82E-75 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 Gene3D G3DSA:3.40.800.10 2 316 3.7E-103 T 11-10-2018 APT56_12475 4be92de15cd4bfd9be45265164455ebe 316 PIRSF PIRSF036979 34 316 1.3E-27 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 PIRSF PIRSF000429 1 393 1.5E-114 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 SUPERFAMILY SSF53901 1 267 2.48E-64 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 SUPERFAMILY SSF53901 272 392 3.36E-42 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 7.0E-45 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 Gene3D G3DSA:3.40.47.10 6 276 2.0E-133 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 3.1E-120 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 Pfam PF00108 Thiolase, N-terminal domain 5 262 9.9E-56 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 Gene3D G3DSA:3.40.47.10 126 387 2.0E-133 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 APT56_16320 f50c20ff149303c0555f4c49c30215ba 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 APT56_10440 25e40fb856e648ba232a711a327d0518 501 Pfam PF00034 Cytochrome c 223 337 9.1E-5 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_10440 25e40fb856e648ba232a711a327d0518 501 Gene3D G3DSA:1.10.760.10 198 339 2.3E-9 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_10440 25e40fb856e648ba232a711a327d0518 501 SUPERFAMILY SSF46626 213 264 3.04E-8 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_05705 73297276b92744ec124d15236545305c 598 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 598 35.491 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 APT56_05705 73297276b92744ec124d15236545305c 598 Pfam PF03814 Potassium-transporting ATPase A subunit 11 596 3.6E-240 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 APT56_05705 73297276b92744ec124d15236545305c 598 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 244 597 1.8E-151 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 APT56_05705 73297276b92744ec124d15236545305c 598 PIRSF PIRSF001294 1 598 1.4E-235 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 APT56_24650 281801885e115b946c06b9e67a95efb5 371 SUPERFAMILY SSF53756 2 366 1.95E-72 T 11-10-2018 APT56_24650 281801885e115b946c06b9e67a95efb5 371 Pfam PF13579 Glycosyl transferase 4-like domain 13 172 7.5E-13 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_24650 281801885e115b946c06b9e67a95efb5 371 Pfam PF00534 Glycosyl transferases group 1 185 343 1.5E-31 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_24650 281801885e115b946c06b9e67a95efb5 371 Gene3D G3DSA:3.40.50.2000 13 361 3.6E-58 T 11-10-2018 APT56_24650 281801885e115b946c06b9e67a95efb5 371 Gene3D G3DSA:3.40.50.2000 173 351 3.6E-58 T 11-10-2018 APT56_18905 22a80f626fbefaf34fb2e25e2cf33fb3 262 Pfam PF02567 Phenazine biosynthesis-like protein 9 256 6.9E-57 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_18905 22a80f626fbefaf34fb2e25e2cf33fb3 262 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 259 2.7E-37 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_18905 22a80f626fbefaf34fb2e25e2cf33fb3 262 Gene3D G3DSA:3.10.310.10 7 258 2.0E-92 T 11-10-2018 APT56_18905 22a80f626fbefaf34fb2e25e2cf33fb3 262 SUPERFAMILY SSF54506 4 262 3.0E-82 T 11-10-2018 APT56_18905 22a80f626fbefaf34fb2e25e2cf33fb3 262 PIRSF PIRSF016184 1 262 1.9E-59 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 APT56_18905 22a80f626fbefaf34fb2e25e2cf33fb3 262 Gene3D G3DSA:3.10.310.10 118 250 2.0E-92 T 11-10-2018 APT56_01810 78e5a96a977354d6ec10112b3736c933 294 SUPERFAMILY SSF161098 73 262 4.45E-30 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01810 78e5a96a977354d6ec10112b3736c933 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 279 1.2E-32 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_01810 78e5a96a977354d6ec10112b3736c933 294 Gene3D G3DSA:1.10.3720.10 69 281 1.9E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13595 f03948f25bbb30981d1a3e88e8876eb0 442 SUPERFAMILY SSF51679 4 435 1.02E-132 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_13595 f03948f25bbb30981d1a3e88e8876eb0 442 Gene3D G3DSA:3.20.20.30 2 441 1.2E-156 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APT56_13595 f03948f25bbb30981d1a3e88e8876eb0 442 Pfam PF00296 Luciferase-like monooxygenase 23 383 5.3E-61 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APT56_13595 f03948f25bbb30981d1a3e88e8876eb0 442 PIRSF PIRSF000337 3 441 1.1E-157 T 11-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 APT56_13595 f03948f25bbb30981d1a3e88e8876eb0 442 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 429 1.4E-171 T 11-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 APT56_15830 4749f1137f232ad1c214f606a1115c8c 277 Pfam PF02653 Branched-chain amino acid transport system / permease component 4 251 1.9E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 SUPERFAMILY SSF51905 17 422 1.71E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 39 424 1.1E-157 T 11-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 Gene3D G3DSA:1.10.8.260 294 349 3.1E-64 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 19 417 7.9E-81 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 Pfam PF03486 HI0933-like protein 18 418 8.8E-103 T 11-10-2018 APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 SUPERFAMILY SSF160996 214 364 4.97E-9 T 11-10-2018 APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 PRINTS PR00419 Adrenodoxin reductase family signature 18 40 1.0E-7 T 11-10-2018 APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 PRINTS PR00419 Adrenodoxin reductase family signature 41 54 1.0E-7 T 11-10-2018 APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 Gene3D G3DSA:2.40.30.10 210 366 3.1E-64 T 11-10-2018 APT56_08170 1e04c73822a8cc0db1cc895527e72cf2 434 Gene3D G3DSA:3.50.50.60 19 417 3.1E-64 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_26265 2cfb4dd0252ef4dbe1a0fb9591d77fd8 481 Pfam PF03606 C4-dicarboxylate anaerobic carrier 98 423 1.7E-9 T 11-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 APT56_15080 1a079ffe2fa107c9f2825eaa68d194bc 548 SUPERFAMILY SSF161098 289 541 2.07E-40 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15080 1a079ffe2fa107c9f2825eaa68d194bc 548 Gene3D G3DSA:1.10.3720.10 8 278 4.1E-52 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15080 1a079ffe2fa107c9f2825eaa68d194bc 548 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 360 540 8.5E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_15080 1a079ffe2fa107c9f2825eaa68d194bc 548 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 271 7.8E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_15080 1a079ffe2fa107c9f2825eaa68d194bc 548 SUPERFAMILY SSF161098 6 267 1.31E-45 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15080 1a079ffe2fa107c9f2825eaa68d194bc 548 Gene3D G3DSA:1.10.3720.10 297 542 2.7E-36 T 11-10-2018 IPR035906 MetI-like superfamily APT56_27755 16f00dee079fac3893b6e5ce173a2f92 718 Gene3D G3DSA:3.60.21.10 47 201 8.7E-10 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_27755 16f00dee079fac3893b6e5ce173a2f92 718 Gene3D G3DSA:3.60.21.10 254 479 3.1E-32 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_27755 16f00dee079fac3893b6e5ce173a2f92 718 Pfam PF00149 Calcineurin-like phosphoesterase 50 420 7.0E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_27755 16f00dee079fac3893b6e5ce173a2f92 718 SUPERFAMILY SSF56300 89 431 1.11E-19 T 11-10-2018 APT56_09230 f77ddad3d4067d1ca68afb14ba0ef9dc 355 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 348 9.6E-87 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT56_09230 f77ddad3d4067d1ca68afb14ba0ef9dc 355 SMART SM01329 6 348 5.3E-181 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT56_09230 f77ddad3d4067d1ca68afb14ba0ef9dc 355 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 4 350 3.6E-170 T 11-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 APT56_09230 f77ddad3d4067d1ca68afb14ba0ef9dc 355 Gene3D G3DSA:3.40.718.10 2 354 1.5E-136 T 11-10-2018 APT56_09230 f77ddad3d4067d1ca68afb14ba0ef9dc 355 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 242 261 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 APT56_09230 f77ddad3d4067d1ca68afb14ba0ef9dc 355 SUPERFAMILY SSF53659 3 351 1.48E-119 T 11-10-2018 APT56_11915 4c42dd77a4ad1674fd34b3f4edcbaf1d 166 Pfam PF01584 CheW-like domain 18 155 3.5E-36 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_11915 4c42dd77a4ad1674fd34b3f4edcbaf1d 166 Gene3D G3DSA:2.30.30.40 20 147 4.1E-39 T 11-10-2018 APT56_11915 4c42dd77a4ad1674fd34b3f4edcbaf1d 166 SUPERFAMILY SSF50341 18 158 1.57E-38 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 APT56_11915 4c42dd77a4ad1674fd34b3f4edcbaf1d 166 SMART SM00260 14 153 1.3E-40 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_11915 4c42dd77a4ad1674fd34b3f4edcbaf1d 166 Gene3D G3DSA:2.40.50.180 37 148 4.1E-39 T 11-10-2018 APT56_11670 31f63304c7301d8582e735fe1d18ac46 204 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11670 31f63304c7301d8582e735fe1d18ac46 204 SUPERFAMILY SSF54523 54 201 1.96E-9 T 11-10-2018 APT56_11670 31f63304c7301d8582e735fe1d18ac46 204 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 33 3.2E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11670 31f63304c7301d8582e735fe1d18ac46 204 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 33 3.3E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11670 31f63304c7301d8582e735fe1d18ac46 204 Pfam PF11612 Type II secretion system (T2SS), protein J 64 196 6.3E-8 T 11-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 APT56_23860 07c556fdca6c4f42e676dcbc3cc2a6ae 311 SMART SM01130 5 296 1.8E-70 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_23860 07c556fdca6c4f42e676dcbc3cc2a6ae 311 SUPERFAMILY SSF51569 2 297 2.51E-70 T 11-10-2018 APT56_23860 07c556fdca6c4f42e676dcbc3cc2a6ae 311 Gene3D G3DSA:3.20.20.70 1 298 5.5E-70 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_23860 07c556fdca6c4f42e676dcbc3cc2a6ae 311 PIRSF PIRSF001365 1 304 1.8E-59 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_23860 07c556fdca6c4f42e676dcbc3cc2a6ae 311 Pfam PF00701 Dihydrodipicolinate synthetase family 6 287 4.7E-49 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_23860 07c556fdca6c4f42e676dcbc3cc2a6ae 311 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 3.3E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_23860 07c556fdca6c4f42e676dcbc3cc2a6ae 311 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 3.3E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_23860 07c556fdca6c4f42e676dcbc3cc2a6ae 311 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 3.3E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05315 f613443194f3edffeba04d5cbe408d37 389 Gene3D G3DSA:3.30.9.50 84 265 3.2E-63 T 11-10-2018 APT56_05315 f613443194f3edffeba04d5cbe408d37 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.2E-13 T 11-10-2018 APT56_05315 f613443194f3edffeba04d5cbe408d37 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 2.2E-13 T 11-10-2018 APT56_05315 f613443194f3edffeba04d5cbe408d37 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 2.2E-13 T 11-10-2018 APT56_05315 f613443194f3edffeba04d5cbe408d37 389 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 290 303 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 APT56_05315 f613443194f3edffeba04d5cbe408d37 389 Gene3D G3DSA:3.50.50.60 7 333 3.2E-63 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_05315 f613443194f3edffeba04d5cbe408d37 389 SUPERFAMILY SSF51905 6 376 3.24E-28 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_05315 f613443194f3edffeba04d5cbe408d37 389 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 384 1.0E-84 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 APT56_05315 f613443194f3edffeba04d5cbe408d37 389 Pfam PF01494 FAD binding domain 157 316 1.9E-10 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_12905 60ede69f6d39e9bcd9236493698ce3a2 520 SUPERFAMILY SSF54862 1 499 3.56E-178 T 11-10-2018 APT56_12905 60ede69f6d39e9bcd9236493698ce3a2 520 Gene3D G3DSA:3.30.70.20 1 298 1.7E-101 T 11-10-2018 APT56_12905 60ede69f6d39e9bcd9236493698ce3a2 520 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 441 5.0E-29 T 11-10-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 APT56_12905 60ede69f6d39e9bcd9236493698ce3a2 520 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 494 2.8E-284 T 11-10-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 APT56_12905 60ede69f6d39e9bcd9236493698ce3a2 520 Gene3D G3DSA:1.10.3650.10 358 439 1.6E-27 T 11-10-2018 IPR038262 Nitrate reductase beta, C-terminal domain superfamily KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 APT56_12905 60ede69f6d39e9bcd9236493698ce3a2 520 Pfam PF13247 4Fe-4S dicluster domain 175 271 3.2E-37 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 Pfam PF03448 MgtE intracellular N domain 75 176 1.3E-26 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 Gene3D G3DSA:3.10.580.10 174 301 5.9E-43 T 11-10-2018 APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 SUPERFAMILY SSF54631 177 312 1.52E-27 T 11-10-2018 APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 SUPERFAMILY SSF161093 318 489 7.72E-44 T 11-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 SMART SM00116 185 238 1.2 T 11-10-2018 IPR000644 CBS domain APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 SMART SM00116 249 297 0.0023 T 11-10-2018 IPR000644 CBS domain APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 Pfam PF00571 CBS domain 242 296 7.9E-7 T 11-10-2018 IPR000644 CBS domain APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 Pfam PF00571 CBS domain 178 234 6.1E-5 T 11-10-2018 IPR000644 CBS domain APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 TIGRFAM TIGR00400 mgtE: magnesium transporter 59 489 4.0E-82 T 11-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 SUPERFAMILY SSF158791 56 175 2.35E-28 T 11-10-2018 APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 Gene3D G3DSA:1.25.60.10 49 173 1.7E-18 T 11-10-2018 IPR038076 MgtE, N-terminal domain superfamily APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 SMART SM00924 75 178 1.8E-38 T 11-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 Pfam PF01769 Divalent cation transporter 361 482 6.9E-23 T 11-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 APT56_04435 133cbfc60b7439fc8976790e2cf46228 490 Gene3D G3DSA:1.10.357.20 316 489 6.9E-45 T 11-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain APT56_00355 7981a7cf7b80ce8b6745761d5a21fed2 244 SUPERFAMILY SSF52540 1 226 2.95E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_00355 7981a7cf7b80ce8b6745761d5a21fed2 244 Gene3D G3DSA:3.40.50.300 1 244 3.1E-73 T 11-10-2018 APT56_00355 7981a7cf7b80ce8b6745761d5a21fed2 244 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00355 7981a7cf7b80ce8b6745761d5a21fed2 244 SMART SM00382 26 213 3.9E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00355 7981a7cf7b80ce8b6745761d5a21fed2 244 Pfam PF00005 ABC transporter 17 165 3.3E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00355 7981a7cf7b80ce8b6745761d5a21fed2 244 PIRSF PIRSF039085 1 243 1.0E-97 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_25020 aba2ea11c56cbc8a66e1e7e161093c41 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 319 3.8E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_25020 aba2ea11c56cbc8a66e1e7e161093c41 325 Gene3D G3DSA:3.40.190.10 127 250 5.6E-114 T 11-10-2018 APT56_25020 aba2ea11c56cbc8a66e1e7e161093c41 325 SUPERFAMILY SSF53850 109 285 5.83E-15 T 11-10-2018 APT56_25020 aba2ea11c56cbc8a66e1e7e161093c41 325 PIRSF PIRSF017082 1 325 1.9E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_25020 aba2ea11c56cbc8a66e1e7e161093c41 325 Gene3D G3DSA:3.40.190.150 29 315 5.6E-114 T 11-10-2018 APT56_02515 406283dc3567c43dec4172f5f0eafe37 423 Pfam PF00561 alpha/beta hydrolase fold 77 391 3.7E-35 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_02515 406283dc3567c43dec4172f5f0eafe37 423 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 48 402 2.9E-138 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 APT56_02515 406283dc3567c43dec4172f5f0eafe37 423 Gene3D G3DSA:3.40.50.1820 54 392 3.5E-138 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02515 406283dc3567c43dec4172f5f0eafe37 423 Gene3D G3DSA:1.10.1740.110 213 322 3.5E-138 T 11-10-2018 APT56_02515 406283dc3567c43dec4172f5f0eafe37 423 SUPERFAMILY SSF53474 41 401 6.15E-103 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02515 406283dc3567c43dec4172f5f0eafe37 423 PIRSF PIRSF000443 15 412 4.1E-143 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 APT56_02515 406283dc3567c43dec4172f5f0eafe37 423 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 22 404 30.153 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 APT56_11645 9845bb3897f7f3cdf4c4831f99bfb176 727 SUPERFAMILY SSF56935 57 727 1.28E-77 T 11-10-2018 APT56_11645 9845bb3897f7f3cdf4c4831f99bfb176 727 Pfam PF00593 TonB dependent receptor 327 725 4.1E-33 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_11645 9845bb3897f7f3cdf4c4831f99bfb176 727 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 168 5.1E-13 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_11645 9845bb3897f7f3cdf4c4831f99bfb176 727 Gene3D G3DSA:2.170.130.10 66 181 4.3E-18 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_11645 9845bb3897f7f3cdf4c4831f99bfb176 727 Gene3D G3DSA:2.40.170.20 338 727 4.7E-41 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_05645 bb2260a94ab38c90a3c76d9e95f7b332 120 Gene3D G3DSA:1.10.760.10 22 116 3.2E-24 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_05645 bb2260a94ab38c90a3c76d9e95f7b332 120 PRINTS PR00605 Class IC cytochrome C signature 35 46 1.5E-5 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT56_05645 bb2260a94ab38c90a3c76d9e95f7b332 120 PRINTS PR00605 Class IC cytochrome C signature 87 109 1.5E-5 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 APT56_05645 bb2260a94ab38c90a3c76d9e95f7b332 120 Pfam PF00034 Cytochrome c 26 112 2.5E-14 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_05645 bb2260a94ab38c90a3c76d9e95f7b332 120 SUPERFAMILY SSF46626 5 114 2.23E-24 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_00485 73c839496891c228bf491c3f2abeff94 102 SUPERFAMILY SSF54292 17 94 1.57E-17 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_00485 73c839496891c228bf491c3f2abeff94 102 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 15 94 2.1E-25 T 11-10-2018 APT56_00485 73c839496891c228bf491c3f2abeff94 102 Gene3D G3DSA:3.10.20.440 2 101 9.2E-19 T 11-10-2018 APT56_05170 5c6c13443a550fd498e9f1d82a580736 269 Pfam PF12833 Helix-turn-helix domain 179 257 7.6E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_05170 5c6c13443a550fd498e9f1d82a580736 269 SUPERFAMILY SSF46689 211 259 1.75E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_05170 5c6c13443a550fd498e9f1d82a580736 269 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 208 251 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_05170 5c6c13443a550fd498e9f1d82a580736 269 Gene3D G3DSA:2.60.120.10 9 96 1.7E-8 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_05170 5c6c13443a550fd498e9f1d82a580736 269 SMART SM00342 173 255 8.8E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_05170 5c6c13443a550fd498e9f1d82a580736 269 Gene3D G3DSA:1.10.10.60 155 268 1.6E-18 T 11-10-2018 APT56_05170 5c6c13443a550fd498e9f1d82a580736 269 SUPERFAMILY SSF51182 17 88 3.26E-12 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_15770 bdb2ae271433f3ac71f8039c4c96ead6 540 SMART SM00304 216 268 4.2E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_15770 bdb2ae271433f3ac71f8039c4c96ead6 540 Pfam PF00672 HAMP domain 216 263 1.6E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_15770 bdb2ae271433f3ac71f8039c4c96ead6 540 Gene3D G3DSA:1.10.287.950 215 518 3.2E-90 T 11-10-2018 APT56_15770 bdb2ae271433f3ac71f8039c4c96ead6 540 SUPERFAMILY SSF58104 236 517 1.7E-74 T 11-10-2018 APT56_15770 bdb2ae271433f3ac71f8039c4c96ead6 540 Pfam PF12729 Four helix bundle sensory module for signal transduction 9 186 5.3E-18 T 11-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain APT56_15770 bdb2ae271433f3ac71f8039c4c96ead6 540 SMART SM00283 269 516 5.9E-91 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_15770 bdb2ae271433f3ac71f8039c4c96ead6 540 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 5.8E-54 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_01175 56ad816bf7d90d06a608e0cc5332e4fa 170 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 79 1.7E-20 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 APT56_01175 56ad816bf7d90d06a608e0cc5332e4fa 170 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 149 17.673 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 APT56_01175 56ad816bf7d90d06a608e0cc5332e4fa 170 Pfam PF02416 mttA/Hcf106 family 4 51 4.1E-9 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 APT56_01175 56ad816bf7d90d06a608e0cc5332e4fa 170 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.7E-15 T 11-10-2018 APT56_01175 56ad816bf7d90d06a608e0cc5332e4fa 170 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.7E-15 T 11-10-2018 APT56_01175 56ad816bf7d90d06a608e0cc5332e4fa 170 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.7E-15 T 11-10-2018 APT56_05265 c9993325d000d433bb3e2b31cc5ea32d 233 Pfam PF00072 Response regulator receiver domain 9 118 3.9E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_05265 c9993325d000d433bb3e2b31cc5ea32d 233 SUPERFAMILY SSF46894 137 231 4.82E-25 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_05265 c9993325d000d433bb3e2b31cc5ea32d 233 SMART SM00448 6 117 1.8E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_05265 c9993325d000d433bb3e2b31cc5ea32d 233 SUPERFAMILY SSF52172 4 129 8.82E-41 T 11-10-2018 IPR011006 CheY-like superfamily APT56_05265 c9993325d000d433bb3e2b31cc5ea32d 233 Gene3D G3DSA:3.40.50.2300 1 123 4.0E-36 T 11-10-2018 APT56_05265 c9993325d000d433bb3e2b31cc5ea32d 233 Gene3D G3DSA:1.10.10.10 124 233 2.9E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05265 c9993325d000d433bb3e2b31cc5ea32d 233 SMART SM00862 154 231 3.1E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_05265 c9993325d000d433bb3e2b31cc5ea32d 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 2.7E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_17470 59b0650d236a551584c262353fbe055e 204 Pfam PF00005 ABC transporter 36 157 8.7E-13 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17470 59b0650d236a551584c262353fbe055e 204 SUPERFAMILY SSF52540 2 193 2.26E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17470 59b0650d236a551584c262353fbe055e 204 Gene3D G3DSA:3.40.50.300 1 202 6.8E-35 T 11-10-2018 APT56_00420 d31981066a6fc168a422dcbffa4eacaa 355 Pfam PF13416 Bacterial extracellular solute-binding protein 56 314 6.6E-32 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_00420 d31981066a6fc168a422dcbffa4eacaa 355 Gene3D G3DSA:3.40.190.10 41 320 1.9E-67 T 11-10-2018 APT56_00420 d31981066a6fc168a422dcbffa4eacaa 355 Gene3D G3DSA:3.40.190.10 137 335 1.9E-67 T 11-10-2018 APT56_00420 d31981066a6fc168a422dcbffa4eacaa 355 SUPERFAMILY SSF53850 31 351 8.98E-56 T 11-10-2018 APT56_10525 1d685ddb3ac8f93294540cec3876eb3f 404 SMART SM00267 210 381 5.0E-49 T 11-10-2018 IPR000160 GGDEF domain APT56_10525 1d685ddb3ac8f93294540cec3876eb3f 404 Gene3D G3DSA:3.30.70.270 214 384 4.6E-53 T 11-10-2018 APT56_10525 1d685ddb3ac8f93294540cec3876eb3f 404 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 222 380 1.8E-44 T 11-10-2018 IPR000160 GGDEF domain APT56_10525 1d685ddb3ac8f93294540cec3876eb3f 404 Pfam PF00990 Diguanylate cyclase, GGDEF domain 223 377 3.6E-39 T 11-10-2018 IPR000160 GGDEF domain APT56_10525 1d685ddb3ac8f93294540cec3876eb3f 404 SUPERFAMILY SSF55073 226 380 1.26E-46 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 SUPERFAMILY SSF46785 9 89 3.77E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 SUPERFAMILY SSF53850 96 298 1.09E-39 T 11-10-2018 APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 Pfam PF03466 LysR substrate binding domain 96 297 1.9E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 9.8E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 1.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 1.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 1.4E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 Gene3D G3DSA:1.10.10.10 9 97 3.5E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 Gene3D G3DSA:3.40.190.10 106 293 2.5E-51 T 11-10-2018 APT56_01080 d4f9676ec734251e58dfc581386ebe8d 300 Gene3D G3DSA:3.40.190.10 166 266 2.5E-51 T 11-10-2018 APT56_26705 2c0a20f7bdb711460c72fbf0c07d3090 309 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 31 305 5.0E-71 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 APT56_26705 2c0a20f7bdb711460c72fbf0c07d3090 309 PIRSF PIRSF005917 18 309 4.2E-94 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 APT56_26705 2c0a20f7bdb711460c72fbf0c07d3090 309 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 30 254 33.1 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 APT56_26705 2c0a20f7bdb711460c72fbf0c07d3090 309 Gene3D G3DSA:3.40.1010.10 16 137 2.2E-38 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 APT56_26705 2c0a20f7bdb711460c72fbf0c07d3090 309 Gene3D G3DSA:3.30.950.10 138 261 5.3E-36 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 APT56_26705 2c0a20f7bdb711460c72fbf0c07d3090 309 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 108 119 - T 11-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 APT56_26705 2c0a20f7bdb711460c72fbf0c07d3090 309 SUPERFAMILY SSF53790 30 251 1.22E-72 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 APT56_26705 2c0a20f7bdb711460c72fbf0c07d3090 309 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 30 233 3.4E-30 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 APT56_05130 d089d3ec6ea338c84f8f55d35adfbac7 741 Gene3D G3DSA:3.40.50.970 3 202 3.2E-23 T 11-10-2018 APT56_05130 d089d3ec6ea338c84f8f55d35adfbac7 741 SUPERFAMILY SSF52518 407 656 2.95E-31 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_05130 d089d3ec6ea338c84f8f55d35adfbac7 741 Gene3D G3DSA:3.40.50.970 447 638 2.8E-14 T 11-10-2018 APT56_05130 d089d3ec6ea338c84f8f55d35adfbac7 741 SUPERFAMILY SSF52518 21 200 2.6E-26 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_05130 d089d3ec6ea338c84f8f55d35adfbac7 741 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 463 607 2.9E-18 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_23590 7e07854317e2b9d0eb70503b5d1d78d7 255 Pfam PF13847 Methyltransferase domain 34 142 6.2E-16 T 11-10-2018 IPR025714 Methyltransferase domain APT56_23590 7e07854317e2b9d0eb70503b5d1d78d7 255 Gene3D G3DSA:1.10.150.290 131 234 2.8E-91 T 11-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 APT56_23590 7e07854317e2b9d0eb70503b5d1d78d7 255 Gene3D G3DSA:3.40.50.150 8 251 2.8E-91 T 11-10-2018 APT56_23590 7e07854317e2b9d0eb70503b5d1d78d7 255 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 1 254 41.634 T 11-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 APT56_23590 7e07854317e2b9d0eb70503b5d1d78d7 255 SUPERFAMILY SSF53335 5 203 8.06E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_01385 6f4020880af1a3f7542f243c9fe39968 936 SMART SM00100 703 819 1.7E-9 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_01385 6f4020880af1a3f7542f243c9fe39968 936 Gene3D G3DSA:2.60.120.10 696 827 1.7E-24 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_01385 6f4020880af1a3f7542f243c9fe39968 936 SUPERFAMILY SSF51206 695 820 1.31E-23 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APT56_01385 6f4020880af1a3f7542f243c9fe39968 936 Pfam PF00999 Sodium/hydrogen exchanger family 14 413 4.4E-63 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT56_01385 6f4020880af1a3f7542f243c9fe39968 936 Pfam PF00027 Cyclic nucleotide-binding domain 726 804 1.8E-11 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_02675 1c30b1fa919771ec02316691b8cf1c08 280 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 16 276 8.7E-93 T 11-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 APT56_02675 1c30b1fa919771ec02316691b8cf1c08 280 SUPERFAMILY SSF53613 13 279 1.71E-78 T 11-10-2018 IPR029056 Ribokinase-like APT56_02675 1c30b1fa919771ec02316691b8cf1c08 280 Pfam PF08543 Phosphomethylpyrimidine kinase 23 274 1.3E-91 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 APT56_02675 1c30b1fa919771ec02316691b8cf1c08 280 Gene3D G3DSA:3.40.1190.20 2 280 2.3E-103 T 11-10-2018 IPR029056 Ribokinase-like APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 SUPERFAMILY SSF51735 6 236 5.16E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 235 1.5E-45 T 11-10-2018 APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 5.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 160 5.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 5.8E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 Gene3D G3DSA:3.40.50.720 1 238 8.7E-67 T 11-10-2018 APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 3.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 3.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 3.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 3.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11250 6aeff8454abf1c4efe902c9f07bda8f6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 3.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_24330 eb23837e4865e3832960206c90651f1d 542 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 225 450 2.5E-63 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 APT56_24330 eb23837e4865e3832960206c90651f1d 542 SUPERFAMILY SSF51735 5 289 5.9E-97 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_24330 eb23837e4865e3832960206c90651f1d 542 Gene3D G3DSA:3.40.50.720 3 289 4.4E-108 T 11-10-2018 APT56_24330 eb23837e4865e3832960206c90651f1d 542 PRINTS PR00084 Mannitol dehydrogenase signature 256 271 2.2E-17 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT56_24330 eb23837e4865e3832960206c90651f1d 542 PRINTS PR00084 Mannitol dehydrogenase signature 31 41 2.2E-17 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT56_24330 eb23837e4865e3832960206c90651f1d 542 PRINTS PR00084 Mannitol dehydrogenase signature 226 239 2.2E-17 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT56_24330 eb23837e4865e3832960206c90651f1d 542 PRINTS PR00084 Mannitol dehydrogenase signature 187 200 2.2E-17 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT56_24330 eb23837e4865e3832960206c90651f1d 542 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 30 196 1.1E-37 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_24330 eb23837e4865e3832960206c90651f1d 542 SUPERFAMILY SSF48179 293 504 7.14E-48 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_24330 eb23837e4865e3832960206c90651f1d 542 Gene3D G3DSA:1.10.1040.10 291 508 6.0E-58 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_19830 76d8bc612b4b65c0c3e528e8874c4701 502 SUPERFAMILY SSF161098 245 468 2.88E-16 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19830 76d8bc612b4b65c0c3e528e8874c4701 502 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 264 469 1.5E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_19830 76d8bc612b4b65c0c3e528e8874c4701 502 Gene3D G3DSA:1.10.3720.10 233 465 2.3E-17 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11385 737b6ba2e7ad924be9630062f135e854 402 SUPERFAMILY SSF103473 25 392 4.58E-49 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_11385 737b6ba2e7ad924be9630062f135e854 402 Pfam PF07690 Major Facilitator Superfamily 28 246 9.0E-23 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_11385 737b6ba2e7ad924be9630062f135e854 402 Gene3D G3DSA:1.20.1250.20 23 393 9.0E-42 T 11-10-2018 APT56_06105 c1ed9796ed485993348782121b6ac909 175 Gene3D G3DSA:1.10.10.10 94 168 4.9E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06105 c1ed9796ed485993348782121b6ac909 175 Pfam PF04542 Sigma-70 region 2 15 83 1.8E-12 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_06105 c1ed9796ed485993348782121b6ac909 175 SUPERFAMILY SSF88946 11 100 2.35E-13 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_06105 c1ed9796ed485993348782121b6ac909 175 SUPERFAMILY SSF88659 108 167 3.92E-13 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_06105 c1ed9796ed485993348782121b6ac909 175 Gene3D G3DSA:1.10.1740.10 1 81 1.3E-10 T 11-10-2018 APT56_06105 c1ed9796ed485993348782121b6ac909 175 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 168 2.4E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_06105 c1ed9796ed485993348782121b6ac909 175 Pfam PF08281 Sigma-70, region 4 115 167 4.3E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_11300 9e7c4eab007c35a5e0d7cf7db9d241b4 390 Pfam PF02803 Thiolase, C-terminal domain 262 365 1.5E-9 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_11300 9e7c4eab007c35a5e0d7cf7db9d241b4 390 Pfam PF00108 Thiolase, N-terminal domain 6 184 6.6E-22 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_11300 9e7c4eab007c35a5e0d7cf7db9d241b4 390 Gene3D G3DSA:3.40.47.10 3 388 2.6E-98 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_11300 9e7c4eab007c35a5e0d7cf7db9d241b4 390 PIRSF PIRSF000429 1 388 1.0E-66 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_11300 9e7c4eab007c35a5e0d7cf7db9d241b4 390 SUPERFAMILY SSF53901 16 359 6.46E-41 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_23870 efee2d07d2e07c5a6d4c1f809fbb813a 283 Gene3D G3DSA:3.40.50.1820 2 282 1.8E-51 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_23870 efee2d07d2e07c5a6d4c1f809fbb813a 283 Pfam PF12697 Alpha/beta hydrolase family 54 276 2.6E-11 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_23870 efee2d07d2e07c5a6d4c1f809fbb813a 283 SUPERFAMILY SSF53474 23 280 5.6E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_11245 24a35435c4ee8281abb3ee599c55938d 334 PIRSF PIRSF017082 1 334 9.6E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_11245 24a35435c4ee8281abb3ee599c55938d 334 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 330 5.5E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_11245 24a35435c4ee8281abb3ee599c55938d 334 Gene3D G3DSA:3.40.190.150 36 323 4.3E-100 T 11-10-2018 APT56_11245 24a35435c4ee8281abb3ee599c55938d 334 Gene3D G3DSA:3.40.190.10 134 259 4.3E-100 T 11-10-2018 APT56_11245 24a35435c4ee8281abb3ee599c55938d 334 SUPERFAMILY SSF53850 115 279 1.09E-9 T 11-10-2018 APT56_11035 b6a6a07432c6f83b5e781ce1449ee2d8 264 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 56 238 2.1E-58 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11035 b6a6a07432c6f83b5e781ce1449ee2d8 264 Pfam PF01578 Cytochrome C assembly protein 47 195 4.7E-23 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APT56_11035 b6a6a07432c6f83b5e781ce1449ee2d8 264 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 56 73 6.4E-37 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11035 b6a6a07432c6f83b5e781ce1449ee2d8 264 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 167 193 6.4E-37 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11035 b6a6a07432c6f83b5e781ce1449ee2d8 264 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 111 131 6.4E-37 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11035 b6a6a07432c6f83b5e781ce1449ee2d8 264 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 73 93 6.4E-37 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_11035 b6a6a07432c6f83b5e781ce1449ee2d8 264 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 132 152 6.4E-37 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APT56_15065 f8ca8337e9b045d1b1dea9fc282c0ab9 240 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 26 201 1.1E-30 T 11-10-2018 APT56_15065 f8ca8337e9b045d1b1dea9fc282c0ab9 240 Gene3D G3DSA:3.40.50.1000 3 235 1.4E-71 T 11-10-2018 IPR023214 HAD superfamily APT56_15065 f8ca8337e9b045d1b1dea9fc282c0ab9 240 SUPERFAMILY SSF56784 23 234 6.04E-45 T 11-10-2018 IPR036412 HAD-like superfamily APT56_15065 f8ca8337e9b045d1b1dea9fc282c0ab9 240 Pfam PF12710 haloacid dehalogenase-like hydrolase 27 201 1.3E-23 T 11-10-2018 APT56_15065 f8ca8337e9b045d1b1dea9fc282c0ab9 240 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 23 234 2.7E-58 T 11-10-2018 APT56_00940 2c9972cdad73c7a20e67857d4b29a63e 265 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 1 255 37.844 T 11-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 APT56_00940 2c9972cdad73c7a20e67857d4b29a63e 265 SUPERFAMILY SSF56300 1 255 3.04E-57 T 11-10-2018 APT56_00940 2c9972cdad73c7a20e67857d4b29a63e 265 Pfam PF00149 Calcineurin-like phosphoesterase 2 198 2.7E-17 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_00940 2c9972cdad73c7a20e67857d4b29a63e 265 Gene3D G3DSA:3.60.21.40 1 241 1.0E-93 T 11-10-2018 APT56_00940 2c9972cdad73c7a20e67857d4b29a63e 265 Gene3D G3DSA:3.30.750.180 105 232 1.0E-93 T 11-10-2018 APT56_27040 533fd805231d72fadaee86dc909dede6 225 SUPERFAMILY SSF100950 12 205 1.1E-40 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_27040 533fd805231d72fadaee86dc909dede6 225 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 12 199 6.0E-26 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase APT56_27040 533fd805231d72fadaee86dc909dede6 225 PIRSF PIRSF006806 8 202 4.0E-24 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase APT56_27040 533fd805231d72fadaee86dc909dede6 225 Gene3D G3DSA:3.40.50.10420 11 210 1.8E-39 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily APT56_27040 533fd805231d72fadaee86dc909dede6 225 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 13 199 2.3E-37 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 SUPERFAMILY SSF53850 90 296 1.69E-43 T 11-10-2018 APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.7E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 Pfam PF03466 LysR substrate binding domain 98 298 5.5E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 SUPERFAMILY SSF46785 2 85 2.18E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.6E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 Gene3D G3DSA:3.40.190.10 171 269 7.4E-73 T 11-10-2018 APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 Gene3D G3DSA:1.10.10.10 1 88 4.1E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05020 30ab28433b63a92cf2cf1be6b69d9e4c 300 Gene3D G3DSA:3.40.190.10 92 293 7.4E-73 T 11-10-2018 APT56_22340 3547117ecc11e1c63549d7327f5211c6 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 320 1.7E-45 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_22340 3547117ecc11e1c63549d7327f5211c6 322 Gene3D G3DSA:1.10.3720.10 87 314 2.0E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22340 3547117ecc11e1c63549d7327f5211c6 322 SUPERFAMILY SSF161098 92 305 1.57E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_25720 cb943cd73e26194e6e69bf762ffce03f 360 SUPERFAMILY SSF53850 53 358 1.76E-52 T 11-10-2018 APT56_25720 cb943cd73e26194e6e69bf762ffce03f 360 Pfam PF13416 Bacterial extracellular solute-binding protein 59 306 1.4E-39 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_25720 cb943cd73e26194e6e69bf762ffce03f 360 Gene3D G3DSA:3.40.190.10 41 357 2.9E-107 T 11-10-2018 APT56_25720 cb943cd73e26194e6e69bf762ffce03f 360 Gene3D G3DSA:3.40.190.10 144 267 2.9E-107 T 11-10-2018 APT56_12060 79a848cef8b99386852e546f84905f90 262 Pfam PF01311 Bacterial export proteins, family 1 15 246 5.4E-74 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_12060 79a848cef8b99386852e546f84905f90 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 1.1E-30 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_12060 79a848cef8b99386852e546f84905f90 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 1.1E-30 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_12060 79a848cef8b99386852e546f84905f90 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 1.1E-30 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_12060 79a848cef8b99386852e546f84905f90 262 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 1.1E-30 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 APT56_12060 79a848cef8b99386852e546f84905f90 262 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 15 254 1.3E-74 T 11-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 APT56_27315 7c3d41b6c25d8c368752a942aa1db5d9 284 Gene3D G3DSA:2.30.30.100 235 284 2.2E-11 T 11-10-2018 APT56_27315 7c3d41b6c25d8c368752a942aa1db5d9 284 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 32 280 1.4E-31 T 11-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_27315 7c3d41b6c25d8c368752a942aa1db5d9 284 SUPERFAMILY SSF55681 29 230 1.62E-35 T 11-10-2018 APT56_27315 7c3d41b6c25d8c368752a942aa1db5d9 284 Pfam PF02237 Biotin protein ligase C terminal domain 236 281 1.7E-7 T 11-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APT56_27315 7c3d41b6c25d8c368752a942aa1db5d9 284 SUPERFAMILY SSF50037 236 281 1.83E-6 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal APT56_27315 7c3d41b6c25d8c368752a942aa1db5d9 284 Gene3D G3DSA:3.30.930.10 20 233 1.2E-41 T 11-10-2018 APT56_27315 7c3d41b6c25d8c368752a942aa1db5d9 284 Pfam PF03099 Biotin/lipoate A/B protein ligase family 64 166 5.1E-9 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 3.1E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 3.1E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 SMART SM00345 9 67 8.5E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 Pfam PF07729 FCD domain 77 196 2.5E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 Gene3D G3DSA:1.10.10.10 3 68 3.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 67 1.8E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 SUPERFAMILY SSF48008 74 205 1.8E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 SUPERFAMILY SSF46785 4 71 8.53E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 SMART SM00895 77 197 1.4E-14 T 11-10-2018 IPR011711 GntR, C-terminal APT56_13060 3d73885484c8a575f5f829ed8609cb42 217 Gene3D G3DSA:1.20.120.530 71 208 5.1E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_27250 be80a6e155126ff37a775456b36a2c0e 187 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 26 177 5.0E-48 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 APT56_27250 be80a6e155126ff37a775456b36a2c0e 187 Pfam PF01923 Cobalamin adenosyltransferase 8 165 9.2E-57 T 11-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 APT56_27250 be80a6e155126ff37a775456b36a2c0e 187 SUPERFAMILY SSF89028 8 178 1.06E-58 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 APT56_27250 be80a6e155126ff37a775456b36a2c0e 187 Gene3D G3DSA:1.20.1200.10 17 182 2.9E-62 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 APT56_27250 be80a6e155126ff37a775456b36a2c0e 187 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 10 178 3.1E-61 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 APT56_24780 b3ae47016cb3ea6a697436ad7da6f397 297 Pfam PF02535 ZIP Zinc transporter 147 292 3.7E-22 T 11-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 APT56_23265 e5fd8fc25071f4023d36dfee4601ec2e 226 SUPERFAMILY SSF161098 13 201 2.22E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_23265 e5fd8fc25071f4023d36dfee4601ec2e 226 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 2.4E-29 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_23265 e5fd8fc25071f4023d36dfee4601ec2e 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 215 8.0E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_23265 e5fd8fc25071f4023d36dfee4601ec2e 226 Gene3D G3DSA:1.10.3720.10 7 218 2.9E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14050 0c236fcdda3e9d951fd01b22686f427f 337 Pfam PF00005 ABC transporter 27 184 5.0E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14050 0c236fcdda3e9d951fd01b22686f427f 337 SUPERFAMILY SSF52540 6 256 1.59E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14050 0c236fcdda3e9d951fd01b22686f427f 337 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 322 9.5E-21 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_14050 0c236fcdda3e9d951fd01b22686f427f 337 SMART SM00382 35 234 3.3E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14050 0c236fcdda3e9d951fd01b22686f427f 337 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 303 1.1E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_14050 0c236fcdda3e9d951fd01b22686f427f 337 Gene3D G3DSA:3.40.50.300 4 335 7.4E-97 T 11-10-2018 APT56_14050 0c236fcdda3e9d951fd01b22686f427f 337 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 SUPERFAMILY SSF51735 5 249 2.76E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.5E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 247 8.9E-62 T 11-10-2018 APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.1E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 Gene3D G3DSA:3.40.50.720 2 250 9.3E-81 T 11-10-2018 APT56_26035 a19b3ae52c7a1a55d44727174e539768 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 186 5.3E-4 T 11-10-2018 APT56_04550 cac5592650d647c872771509a4334c63 642 Pfam PF00884 Sulfatase 272 538 3.2E-40 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 APT56_04550 cac5592650d647c872771509a4334c63 642 Gene3D G3DSA:3.40.720.10 266 545 5.3E-128 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_04550 cac5592650d647c872771509a4334c63 642 Gene3D G3DSA:3.30.1120.80 547 622 5.3E-128 T 11-10-2018 APT56_04550 cac5592650d647c872771509a4334c63 642 PIRSF PIRSF005091 16 597 8.0E-82 T 11-10-2018 IPR012160 Lipoteichoic acid synthase-like APT56_04550 cac5592650d647c872771509a4334c63 642 SUPERFAMILY SSF53649 270 597 1.89E-63 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APT56_03400 cef087c2183eafd10c8f64583519ea04 397 Gene3D G3DSA:1.20.1250.20 7 186 8.0E-32 T 11-10-2018 APT56_03400 cef087c2183eafd10c8f64583519ea04 397 Pfam PF07690 Major Facilitator Superfamily 14 334 7.1E-44 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_03400 cef087c2183eafd10c8f64583519ea04 397 Gene3D G3DSA:1.20.1250.20 207 395 3.8E-21 T 11-10-2018 APT56_03400 cef087c2183eafd10c8f64583519ea04 397 SUPERFAMILY SSF103473 9 395 2.62E-61 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_08900 ba9d851b0aeec3f97e7c073e67684251 247 Gene3D G3DSA:3.40.50.12500 17 246 4.5E-53 T 11-10-2018 APT56_08900 ba9d851b0aeec3f97e7c073e67684251 247 Pfam PF01177 Asp/Glu/Hydantoin racemase 21 230 9.8E-7 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_26855 a35a3447146048f2be765afbd38c8cc7 641 Gene3D G3DSA:3.40.50.300 386 638 1.3E-59 T 11-10-2018 APT56_26855 a35a3447146048f2be765afbd38c8cc7 641 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 615 637 2.6E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_26855 a35a3447146048f2be765afbd38c8cc7 641 SUPERFAMILY SSF52540 389 636 9.3E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26855 a35a3447146048f2be765afbd38c8cc7 641 Pfam PF02653 Branched-chain amino acid transport system / permease component 29 341 5.2E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_26855 a35a3447146048f2be765afbd38c8cc7 641 SMART SM00382 415 623 1.9E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_26855 a35a3447146048f2be765afbd38c8cc7 641 Pfam PF00005 ABC transporter 406 566 3.7E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 Pfam PF00512 His Kinase A (phospho-acceptor) domain 272 336 4.2E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 SUPERFAMILY SSF55874 326 496 1.57E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 SMART SM00387 382 496 5.3E-36 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 SMART SM00388 272 337 6.1E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 Gene3D G3DSA:1.10.287.130 223 338 1.7E-20 T 11-10-2018 APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 433 6.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 469 6.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 447 6.8E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 Gene3D G3DSA:3.30.565.10 342 500 9.3E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 385 494 1.2E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 SUPERFAMILY SSF47384 255 336 3.53E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_08225 97ea59d4edfccb78758a79248f4dc144 504 Pfam PF08521 Two-component sensor kinase N-terminal 51 195 1.0E-34 T 11-10-2018 IPR013727 Two-component sensor kinase, N-terminal APT56_18055 d5a96bf6735380acaa5e4a596093ab3e 256 SUPERFAMILY SSF52540 5 248 8.37E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18055 d5a96bf6735380acaa5e4a596093ab3e 256 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_18055 d5a96bf6735380acaa5e4a596093ab3e 256 TIGRFAM TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA 5 254 4.9E-106 T 11-10-2018 IPR014343 Ectoine/hydroxyectoine ABC transporter, ATP-binding protein APT56_18055 d5a96bf6735380acaa5e4a596093ab3e 256 Pfam PF00005 ABC transporter 20 177 3.0E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_18055 d5a96bf6735380acaa5e4a596093ab3e 256 SMART SM00382 29 226 3.0E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18055 d5a96bf6735380acaa5e4a596093ab3e 256 Gene3D G3DSA:3.40.50.300 2 256 1.2E-77 T 11-10-2018 APT56_18055 d5a96bf6735380acaa5e4a596093ab3e 256 PIRSF PIRSF039085 1 254 6.9E-104 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 Pfam PF01019 Gamma-glutamyltranspeptidase 67 580 1.5E-154 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 53 577 9.5E-129 T 11-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 Gene3D G3DSA:1.10.246.130 283 405 4.4E-41 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 SUPERFAMILY SSF56235 44 584 1.18E-169 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 423 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 427 445 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 74 99 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 149 167 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 167 186 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 464 479 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 297 316 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 267 283 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 488 505 1.1E-67 T 11-10-2018 APT56_04895 7155235136c36dc2df22f1088e1ab94f 585 Gene3D G3DSA:3.60.20.40 406 585 6.3E-55 T 11-10-2018 APT56_04560 681ff853902654b8cf554c0eb49cf936 531 Pfam PF00990 Diguanylate cyclase, GGDEF domain 362 512 7.4E-42 T 11-10-2018 IPR000160 GGDEF domain APT56_04560 681ff853902654b8cf554c0eb49cf936 531 Gene3D G3DSA:3.30.450.20 32 175 4.4E-12 T 11-10-2018 APT56_04560 681ff853902654b8cf554c0eb49cf936 531 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 358 517 1.5E-45 T 11-10-2018 IPR000160 GGDEF domain APT56_04560 681ff853902654b8cf554c0eb49cf936 531 SUPERFAMILY SSF103190 183 262 1.45E-7 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily APT56_04560 681ff853902654b8cf554c0eb49cf936 531 SUPERFAMILY SSF55073 366 519 1.96E-46 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_04560 681ff853902654b8cf554c0eb49cf936 531 SMART SM00267 350 517 3.9E-57 T 11-10-2018 IPR000160 GGDEF domain APT56_04560 681ff853902654b8cf554c0eb49cf936 531 Pfam PF02743 Cache domain 47 263 2.3E-19 T 11-10-2018 IPR033479 Double Cache domain 1 APT56_04560 681ff853902654b8cf554c0eb49cf936 531 Gene3D G3DSA:3.30.70.270 348 517 4.7E-53 T 11-10-2018 APT56_03445 98a5bf68c874a3e881303da1add3f6e7 454 Pfam PF01523 Putative modulator of DNA gyrase 38 327 1.5E-61 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APT56_03445 98a5bf68c874a3e881303da1add3f6e7 454 Gene3D G3DSA:3.30.2290.10 6 236 1.5E-83 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal APT56_03445 98a5bf68c874a3e881303da1add3f6e7 454 SUPERFAMILY SSF111283 17 454 1.7E-122 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 APT56_13780 f71e3cd9dfa7a08843e0e7b2c3cb42a7 141 SUPERFAMILY SSF52402 1 140 6.53E-33 T 11-10-2018 APT56_13780 f71e3cd9dfa7a08843e0e7b2c3cb42a7 141 Pfam PF00582 Universal stress protein family 1 140 4.6E-27 T 11-10-2018 IPR006016 UspA APT56_13780 f71e3cd9dfa7a08843e0e7b2c3cb42a7 141 Gene3D G3DSA:3.40.50.620 1 141 1.0E-33 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_13780 f71e3cd9dfa7a08843e0e7b2c3cb42a7 141 PRINTS PR01438 Universal stress protein signature 101 113 2.4E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_13780 f71e3cd9dfa7a08843e0e7b2c3cb42a7 141 PRINTS PR01438 Universal stress protein signature 119 141 2.4E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_13780 f71e3cd9dfa7a08843e0e7b2c3cb42a7 141 PRINTS PR01438 Universal stress protein signature 1 18 2.4E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_03175 5a561a5664af2dd1e9ce1d8410de8a66 434 SUPERFAMILY SSF51556 56 364 1.25E-65 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_03175 5a561a5664af2dd1e9ce1d8410de8a66 434 Pfam PF01979 Amidohydrolase family 264 427 3.3E-7 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_03175 5a561a5664af2dd1e9ce1d8410de8a66 434 Gene3D G3DSA:2.30.40.10 9 427 2.3E-89 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_03175 5a561a5664af2dd1e9ce1d8410de8a66 434 Gene3D G3DSA:3.20.20.140 57 372 2.3E-89 T 11-10-2018 APT56_03175 5a561a5664af2dd1e9ce1d8410de8a66 434 SUPERFAMILY SSF51338 1 431 9.34E-26 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_18345 704f677023c9ea944f44ed65dc210539 318 Gene3D G3DSA:3.40.50.720 23 309 4.5E-113 T 11-10-2018 APT56_18345 704f677023c9ea944f44ed65dc210539 318 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 152 179 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APT56_18345 704f677023c9ea944f44ed65dc210539 318 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 286 8.1E-49 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_18345 704f677023c9ea944f44ed65dc210539 318 SUPERFAMILY SSF52283 6 136 6.99E-31 T 11-10-2018 APT56_18345 704f677023c9ea944f44ed65dc210539 318 SUPERFAMILY SSF51735 104 287 7.45E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_18345 704f677023c9ea944f44ed65dc210539 318 Gene3D G3DSA:3.40.50.720 104 289 4.5E-113 T 11-10-2018 APT56_18345 704f677023c9ea944f44ed65dc210539 318 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 17 317 7.4E-26 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 126 142 5.1E-8 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 142 157 5.1E-8 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 Gene3D G3DSA:1.10.10.10 99 177 4.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 Pfam PF13545 Crp-like helix-turn-helix domain 101 175 2.4E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 SUPERFAMILY SSF51206 1 96 7.07E-15 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 SMART SM00419 120 168 4.7E-12 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 Pfam PF00027 Cyclic nucleotide-binding domain 1 68 5.1E-7 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 Gene3D G3DSA:2.60.120.10 1 97 9.1E-24 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_13820 1e1dcd411aa8d1e1b1addf6962269215 178 SUPERFAMILY SSF46785 100 177 1.3E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 193 5.7E-4 T 11-10-2018 APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 246 4.5E-60 T 11-10-2018 APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.9E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.9E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 2.9E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 Gene3D G3DSA:3.40.50.720 1 247 1.2E-79 T 11-10-2018 APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.0E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.0E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.0E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.0E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.0E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.0E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04570 6b88c01b756d866ccf15f5345d1b726d 248 SUPERFAMILY SSF51735 1 247 3.04E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_22750 1ba71e4ff3375cb0ad6a60b7fd06c312 225 Gene3D G3DSA:3.10.180.10 2 161 6.3E-6 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_22750 1ba71e4ff3375cb0ad6a60b7fd06c312 225 Pfam PF13468 Glyoxalase-like domain 5 193 3.4E-40 T 11-10-2018 IPR025870 Glyoxalase-like domain APT56_22750 1ba71e4ff3375cb0ad6a60b7fd06c312 225 SUPERFAMILY SSF54593 3 112 3.62E-6 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_19710 27caf335e01a0f050d5300c3cb23fd7f 400 Pfam PF11062 Protein of unknown function (DUF2863) 5 399 4.9E-171 T 11-10-2018 IPR021292 Protein of unknown function DUF2863 APT56_24220 5f629503e1076932c45de64124b485dc 567 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 420 437 1.5E-7 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_24220 5f629503e1076932c45de64124b485dc 567 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 369 380 1.5E-7 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APT56_24220 5f629503e1076932c45de64124b485dc 567 Gene3D G3DSA:3.40.710.10 324 567 4.1E-48 T 11-10-2018 APT56_24220 5f629503e1076932c45de64124b485dc 567 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 343 562 1.0E-39 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 APT56_24220 5f629503e1076932c45de64124b485dc 567 SUPERFAMILY SSF56601 300 564 4.05E-43 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_24220 5f629503e1076932c45de64124b485dc 567 Pfam PF05569 BlaR1 peptidase M56 88 232 1.1E-27 T 11-10-2018 IPR008756 Peptidase M56 APT56_27035 23e52f077c9c971594aa0dd13daca47e 715 Pfam PF14718 Soluble lytic murein transglycosylase L domain 469 528 1.6E-8 T 11-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 APT56_27035 23e52f077c9c971594aa0dd13daca47e 715 SUPERFAMILY SSF48435 97 538 2.75E-100 T 11-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 APT56_27035 23e52f077c9c971594aa0dd13daca47e 715 Gene3D G3DSA:1.10.530.10 536 701 1.1E-39 T 11-10-2018 APT56_27035 23e52f077c9c971594aa0dd13daca47e 715 Pfam PF01464 Transglycosylase SLT domain 548 653 5.3E-21 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 APT56_27035 23e52f077c9c971594aa0dd13daca47e 715 Gene3D G3DSA:1.25.20.10 99 449 2.8E-55 T 11-10-2018 APT56_27035 23e52f077c9c971594aa0dd13daca47e 715 SUPERFAMILY SSF53955 545 702 1.8E-43 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_14045 0fe9987215eede28969225618d550c88 291 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 65 5.8E-9 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_14045 0fe9987215eede28969225618d550c88 291 Gene3D G3DSA:1.10.3720.10 78 290 3.8E-17 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14045 0fe9987215eede28969225618d550c88 291 SUPERFAMILY SSF161098 84 269 1.7E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14045 0fe9987215eede28969225618d550c88 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 288 1.8E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_01820 e6b094581ee04095a70296f9f86f0934 562 Gene3D G3DSA:3.10.105.10 309 530 5.0E-53 T 11-10-2018 APT56_01820 e6b094581ee04095a70296f9f86f0934 562 Gene3D G3DSA:3.40.190.10 41 306 1.1E-73 T 11-10-2018 APT56_01820 e6b094581ee04095a70296f9f86f0934 562 PIRSF PIRSF002741 25 562 7.9E-137 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_01820 e6b094581ee04095a70296f9f86f0934 562 SUPERFAMILY SSF53850 60 559 5.25E-130 T 11-10-2018 APT56_01820 e6b094581ee04095a70296f9f86f0934 562 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 106 462 1.3E-89 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 Gene3D G3DSA:1.10.540.10 6 125 4.8E-23 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 SUPERFAMILY SSF47203 261 379 4.76E-6 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 Gene3D G3DSA:1.20.140.10 239 383 1.7E-12 T 11-10-2018 APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 130 142 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 223 2.3E-22 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 Gene3D G3DSA:2.40.110.10 127 238 4.6E-33 T 11-10-2018 APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 SUPERFAMILY SSF56645 12 245 5.1E-62 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 124 6.0E-21 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_21340 23f141ac1b6b86618d17ff89bccaeee0 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 280 380 2.7E-5 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_14610 7539002d439b7a782e86778cab22e72b 277 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 7 99 1.4E-14 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal APT56_14610 7539002d439b7a782e86778cab22e72b 277 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 226 249 - T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_14610 7539002d439b7a782e86778cab22e72b 277 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 169 271 6.2E-33 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_14610 7539002d439b7a782e86778cab22e72b 277 SUPERFAMILY SSF51735 7 164 4.66E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_14610 7539002d439b7a782e86778cab22e72b 277 PIRSF PIRSF000193 4 274 1.3E-69 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_14610 7539002d439b7a782e86778cab22e72b 277 SUPERFAMILY SSF48179 167 275 1.21E-32 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_14610 7539002d439b7a782e86778cab22e72b 277 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 5 271 25.537 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_14610 7539002d439b7a782e86778cab22e72b 277 Gene3D G3DSA:3.40.50.720 1 168 2.6E-42 T 11-10-2018 APT56_14610 7539002d439b7a782e86778cab22e72b 277 Gene3D G3DSA:1.10.3730.10 169 276 2.4E-38 T 11-10-2018 APT56_14610 7539002d439b7a782e86778cab22e72b 277 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 7 271 1.1E-74 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APT56_26640 b20786b869893924e915db0157da9126 200 PIRSF PIRSF006118 18 190 4.4E-59 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT56_26640 b20786b869893924e915db0157da9126 200 SUPERFAMILY SSF56784 27 184 8.27E-39 T 11-10-2018 IPR036412 HAD-like superfamily APT56_26640 b20786b869893924e915db0157da9126 200 Pfam PF08282 haloacid dehalogenase-like hydrolase 96 162 3.9E-7 T 11-10-2018 APT56_26640 b20786b869893924e915db0157da9126 200 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 30 181 1.7E-41 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT56_26640 b20786b869893924e915db0157da9126 200 Gene3D G3DSA:3.40.50.1000 23 190 2.4E-49 T 11-10-2018 IPR023214 HAD superfamily APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 SMART SM00487 23 220 1.0E-61 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 Gene3D G3DSA:3.30.70.330 386 460 2.1E-19 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 Gene3D G3DSA:3.40.50.300 214 381 3.7E-40 T 11-10-2018 APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 Pfam PF00270 DEAD/DEAH box helicase 28 195 1.4E-50 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 Pfam PF00271 Helicase conserved C-terminal domain 233 336 2.2E-23 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 Pfam PF03880 DbpA RNA binding domain 387 457 1.2E-21 T 11-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 Gene3D G3DSA:3.40.50.300 2 210 1.7E-75 T 11-10-2018 APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 SMART SM00490 256 337 2.1E-24 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 SUPERFAMILY SSF52540 73 359 7.64E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12600 3e6122d19ca5c76cbe16ee0e577e5c99 462 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 PRINTS PR01047 Threonyl-tRNA synthetase signature 511 524 1.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 PRINTS PR01047 Threonyl-tRNA synthetase signature 538 550 1.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 PRINTS PR01047 Threonyl-tRNA synthetase signature 366 389 1.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 PRINTS PR01047 Threonyl-tRNA synthetase signature 468 496 1.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 PRINTS PR01047 Threonyl-tRNA synthetase signature 333 361 1.4E-52 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Pfam PF02824 TGS domain 2 66 2.7E-8 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Gene3D G3DSA:3.10.20.30 1 67 1.4E-18 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 175 223 1.9E-15 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 71 638 34.138 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 77 635 4.1E-214 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 SUPERFAMILY SSF52954 534 637 1.13E-29 T 11-10-2018 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 SMART SM00863 174 223 2.4E-25 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Gene3D G3DSA:3.30.980.10 74 226 2.8E-65 T 11-10-2018 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Pfam PF03129 Anticodon binding domain 545 634 5.5E-19 T 11-10-2018 IPR004154 Anticodon-binding APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 SUPERFAMILY SSF55681 247 530 1.3E-99 T 11-10-2018 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 SUPERFAMILY SSF55186 69 245 2.49E-69 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 322 533 4.7E-43 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Gene3D G3DSA:3.40.50.800 536 645 1.5E-29 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Gene3D G3DSA:3.30.930.10 227 535 1.7E-124 T 11-10-2018 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 SUPERFAMILY SSF81271 2 66 2.39E-11 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APT56_09970 95f401c5b8106f02aa5bbbd74c1bb13f 650 Gene3D G3DSA:3.30.54.20 135 191 2.8E-65 T 11-10-2018 APT56_00795 d6e23bd7d3ee49dfb0e72e78ad11dd8e 443 Gene3D G3DSA:3.90.1150.10 105 435 4.5E-66 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_00795 d6e23bd7d3ee49dfb0e72e78ad11dd8e 443 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 2.3E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_00795 d6e23bd7d3ee49dfb0e72e78ad11dd8e 443 SMART SM00345 9 68 1.3E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_00795 d6e23bd7d3ee49dfb0e72e78ad11dd8e 443 SUPERFAMILY SSF53383 63 438 2.13E-73 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_00795 d6e23bd7d3ee49dfb0e72e78ad11dd8e 443 Gene3D G3DSA:1.10.10.10 2 69 3.4E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00795 d6e23bd7d3ee49dfb0e72e78ad11dd8e 443 Gene3D G3DSA:3.40.640.10 122 337 4.5E-66 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_00795 d6e23bd7d3ee49dfb0e72e78ad11dd8e 443 Pfam PF00155 Aminotransferase class I and II 90 433 1.8E-30 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_00795 d6e23bd7d3ee49dfb0e72e78ad11dd8e 443 SUPERFAMILY SSF46785 3 71 7.79E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 Gene3D G3DSA:1.10.10.10 1 62 2.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 SMART SM00344 12 118 1.7E-30 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 4.7E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 4.7E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 4.7E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 Gene3D G3DSA:3.30.70.920 63 148 3.1E-18 T 11-10-2018 APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 59 1.7E-14 T 11-10-2018 APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 Pfam PF01037 Lrp/AsnC ligand binding domain 78 142 8.2E-12 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 SUPERFAMILY SSF46785 11 72 3.1E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_12520 6c4cb1d5701dfc9195fa05c3b9f2ee3c 155 SUPERFAMILY SSF54909 74 145 3.89E-13 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_02735 465d57819631fb1e05f6a83aa74229e1 403 Pfam PF13378 Enolase C-terminal domain-like 142 377 7.9E-38 T 11-10-2018 IPR029065 Enolase C-terminal domain-like APT56_02735 465d57819631fb1e05f6a83aa74229e1 403 SUPERFAMILY SSF54826 1 112 1.4E-33 T 11-10-2018 APT56_02735 465d57819631fb1e05f6a83aa74229e1 403 Gene3D G3DSA:3.20.20.120 105 366 7.7E-172 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_02735 465d57819631fb1e05f6a83aa74229e1 403 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 85 110 - T 11-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 APT56_02735 465d57819631fb1e05f6a83aa74229e1 403 Gene3D G3DSA:3.30.390.10 5 399 7.7E-172 T 11-10-2018 IPR029017 Enolase-like, N-terminal APT56_02735 465d57819631fb1e05f6a83aa74229e1 403 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 16 110 3.2E-31 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain APT56_02735 465d57819631fb1e05f6a83aa74229e1 403 SMART SM00922 128 257 1.8E-16 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal APT56_02735 465d57819631fb1e05f6a83aa74229e1 403 SUPERFAMILY SSF51604 98 386 5.76E-75 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 Pfam PF07729 FCD domain 99 224 1.1E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 SMART SM00895 98 226 4.1E-23 T 11-10-2018 IPR011711 GntR, C-terminal APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 4.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 4.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 Gene3D G3DSA:1.20.120.530 96 237 1.6E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 SUPERFAMILY SSF48008 97 234 2.17E-24 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 SMART SM00345 16 75 1.5E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 6.6E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 SUPERFAMILY SSF46785 7 79 2.12E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13500 e1ace9aa5aa6390611f8df39a3829a62 240 Gene3D G3DSA:1.10.10.10 7 81 1.7E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08715 01465295a277f5df58ee9c0c947abb66 407 Pfam PF04143 Sulphur transport 62 385 3.1E-72 T 11-10-2018 IPR007272 Sulphur transport domain APT56_27555 f30dd5dbd1b45db9c7dc83781cd29eac 394 Gene3D G3DSA:1.20.1250.20 6 391 6.1E-74 T 11-10-2018 APT56_27555 f30dd5dbd1b45db9c7dc83781cd29eac 394 Pfam PF07690 Major Facilitator Superfamily 48 320 2.9E-30 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_27555 f30dd5dbd1b45db9c7dc83781cd29eac 394 SUPERFAMILY SSF103473 13 392 3.27E-56 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 466 1.3E-238 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 SUPERFAMILY SSF53732 2 466 2.35E-166 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 Gene3D G3DSA:3.30.499.20 4 286 1.8E-97 T 11-10-2018 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 467 60.654 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 ProSitePatterns PS01244 Aconitase family signature 2. 400 413 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 108 116 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 133 148 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 209 222 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 400 413 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 195 208 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 82 95 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 119 132 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 343 354 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 PRINTS PR00415 Aconitase family signature 286 300 8.6E-49 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 Gene3D G3DSA:3.30.499.10 326 467 4.6E-50 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 APT56_09780 a6a59ac4816c25c719e5734f1b5cbb71 467 Pfam PF00330 Aconitase family (aconitate hydratase) 7 458 1.6E-160 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 SMART SM00304 156 208 2.8E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 370 1.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 384 1.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 409 1.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 273 2.9E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 SUPERFAMILY SSF47384 194 273 1.88E-13 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 SMART SM00387 320 431 8.5E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 Gene3D G3DSA:1.10.287.130 160 275 3.9E-22 T 11-10-2018 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 326 427 2.0E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 Gene3D G3DSA:3.30.565.10 279 429 1.2E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 SMART SM00388 209 274 1.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_25140 d54817ae0a4c933a976b6c0f849a9d4f 435 SUPERFAMILY SSF55874 265 427 1.26E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_27720 4ed44e96e20b773545871849b27e3005 131 Pfam PF00410 Ribosomal protein S8 5 130 3.0E-50 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27720 4ed44e96e20b773545871849b27e3005 131 Gene3D G3DSA:3.30.1490.10 74 131 1.5E-24 T 11-10-2018 APT56_27720 4ed44e96e20b773545871849b27e3005 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 32.516 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27720 4ed44e96e20b773545871849b27e3005 131 SUPERFAMILY SSF56047 2 130 3.4E-48 T 11-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27720 4ed44e96e20b773545871849b27e3005 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27720 4ed44e96e20b773545871849b27e3005 131 Gene3D G3DSA:3.30.1370.30 2 73 3.1E-28 T 11-10-2018 APT56_19930 1c1365784eb935018a12072db4816ffb 476 Pfam PF01050 Mannose-6-phosphate isomerase 321 471 1.1E-70 T 11-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 APT56_19930 1c1365784eb935018a12072db4816ffb 476 SUPERFAMILY SSF53448 8 285 4.69E-68 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_19930 1c1365784eb935018a12072db4816ffb 476 Pfam PF00483 Nucleotidyl transferase 10 292 2.3E-58 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT56_19930 1c1365784eb935018a12072db4816ffb 476 Gene3D G3DSA:3.90.550.10 8 353 6.2E-114 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_19930 1c1365784eb935018a12072db4816ffb 476 Gene3D G3DSA:2.60.120.10 354 463 1.5E-18 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_19930 1c1365784eb935018a12072db4816ffb 476 SUPERFAMILY SSF51182 191 475 2.34E-79 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_19930 1c1365784eb935018a12072db4816ffb 476 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 10 475 3.2E-201 T 11-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 Gene3D G3DSA:3.40.640.10 102 465 4.9E-109 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 Pfam PF00155 Aminotransferase class I and II 145 434 1.0E-24 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 Gene3D G3DSA:1.10.10.10 16 100 1.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 SUPERFAMILY SSF46785 14 84 9.9E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 1.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 1.9E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 SUPERFAMILY SSF53383 92 470 6.95E-85 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 SMART SM00345 23 82 6.3E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_05515 db6d1e1b5be85cacc15a5fad750dbf02 471 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 2.0E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26490 a9ebce4ad6265849578eacea50430a02 186 SUPERFAMILY SSF47240 40 185 3.73E-40 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_26490 a9ebce4ad6265849578eacea50430a02 186 Gene3D G3DSA:1.20.1260.10 33 186 1.6E-53 T 11-10-2018 IPR012347 Ferritin-like APT56_26490 a9ebce4ad6265849578eacea50430a02 186 Pfam PF00210 Ferritin-like domain 48 185 2.9E-31 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT56_26490 a9ebce4ad6265849578eacea50430a02 186 PIRSF PIRSF018063 22 186 1.4E-61 T 11-10-2018 IPR014490 DNA-binding protein from starved cells-like APT56_00780 76c56bb98e166d204ac7aca4910f55a0 174 Pfam PF13827 Domain of unknown function (DUF4189) 67 167 4.7E-19 T 11-10-2018 IPR025240 Domain of unknown function DUF4189 APT56_23085 5cf24be9701b935bd42f0298b03737a9 543 SUPERFAMILY SSF48371 130 238 3.17E-10 T 11-10-2018 IPR016024 Armadillo-type fold APT56_23085 5cf24be9701b935bd42f0298b03737a9 543 Gene3D G3DSA:1.25.10.10 107 246 2.7E-6 T 11-10-2018 IPR011989 Armadillo-like helical APT56_23085 5cf24be9701b935bd42f0298b03737a9 543 SMART SM00567 E-Z type HEAT repeats 135 164 0.1 T 11-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT56_23085 5cf24be9701b935bd42f0298b03737a9 543 SMART SM00567 E-Z type HEAT repeats 187 216 670.0 T 11-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT56_23085 5cf24be9701b935bd42f0298b03737a9 543 SMART SM00567 E-Z type HEAT repeats 225 255 530.0 T 11-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT56_23085 5cf24be9701b935bd42f0298b03737a9 543 SMART SM00567 E-Z type HEAT repeats 46 74 290.0 T 11-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 APT56_23085 5cf24be9701b935bd42f0298b03737a9 543 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 250 540 5.0E-129 T 11-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type APT56_23085 5cf24be9701b935bd42f0298b03737a9 543 Pfam PF02653 Branched-chain amino acid transport system / permease component 250 527 2.9E-51 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_26505 c1937bb16304dea05b5a801c17dd2fb7 208 Gene3D G3DSA:1.10.150.240 17 81 8.2E-33 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APT56_26505 c1937bb16304dea05b5a801c17dd2fb7 208 Gene3D G3DSA:3.40.50.1000 8 197 8.2E-33 T 11-10-2018 IPR023214 HAD superfamily APT56_26505 c1937bb16304dea05b5a801c17dd2fb7 208 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 176 2.1E-27 T 11-10-2018 APT56_26505 c1937bb16304dea05b5a801c17dd2fb7 208 SUPERFAMILY SSF56784 2 207 3.07E-40 T 11-10-2018 IPR036412 HAD-like superfamily APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 SMART SM00422 1 70 4.2E-31 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 3.5E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 3.5E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 3.5E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 Pfam PF00376 MerR family regulatory protein 2 39 4.2E-16 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 Pfam PF09278 MerR, DNA binding 44 108 4.9E-17 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 2.0E-54 T 11-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 SUPERFAMILY SSF46955 1 126 9.16E-38 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_15140 3b36e2eb69a83c04a1064d231b427bd1 130 Gene3D G3DSA:1.10.1660.10 1 125 1.7E-33 T 11-10-2018 APT56_09265 0c92d28d45420c13dfc2edd2148e40f1 326 SUPERFAMILY SSF103481 225 310 1.96E-11 T 11-10-2018 APT56_09265 0c92d28d45420c13dfc2edd2148e40f1 326 Pfam PF00892 EamA-like transporter family 172 307 2.4E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_09265 0c92d28d45420c13dfc2edd2148e40f1 326 Pfam PF00892 EamA-like transporter family 19 158 9.0E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_09265 0c92d28d45420c13dfc2edd2148e40f1 326 SUPERFAMILY SSF103481 53 161 6.41E-14 T 11-10-2018 APT56_09515 22794dcbb218138f2a71b20e141a5c70 428 SUPERFAMILY SSF56014 314 422 2.35E-8 T 11-10-2018 APT56_09515 22794dcbb218138f2a71b20e141a5c70 428 Pfam PF04551 GcpE protein 35 415 1.3E-111 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APT56_09515 22794dcbb218138f2a71b20e141a5c70 428 Gene3D G3DSA:3.30.413.10 309 426 1.6E-38 T 11-10-2018 APT56_09515 22794dcbb218138f2a71b20e141a5c70 428 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 23 417 28.331 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APT56_09515 22794dcbb218138f2a71b20e141a5c70 428 PIRSF PIRSF004640 15 424 3.0E-126 T 11-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APT56_09515 22794dcbb218138f2a71b20e141a5c70 428 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 21 414 1.9E-114 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APT56_09515 22794dcbb218138f2a71b20e141a5c70 428 Gene3D G3DSA:3.20.20.20 18 308 1.6E-92 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_18870 cb8cde4ccc9f762e8023b589b9524df0 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 213 6.2E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_18870 cb8cde4ccc9f762e8023b589b9524df0 218 Gene3D G3DSA:1.10.3720.10 3 217 7.6E-52 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18870 cb8cde4ccc9f762e8023b589b9524df0 218 SUPERFAMILY SSF161098 9 207 8.76E-46 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16590 d2325a33dd05854963dbae2e6de30680 323 Gene3D G3DSA:1.10.10.10 5 91 1.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16590 d2325a33dd05854963dbae2e6de30680 323 SUPERFAMILY SSF46785 5 114 2.39E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16590 d2325a33dd05854963dbae2e6de30680 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.1E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16590 d2325a33dd05854963dbae2e6de30680 323 Pfam PF03466 LysR substrate binding domain 91 297 3.5E-45 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16590 d2325a33dd05854963dbae2e6de30680 323 Gene3D G3DSA:3.40.190.290 94 297 5.8E-62 T 11-10-2018 APT56_16590 d2325a33dd05854963dbae2e6de30680 323 SUPERFAMILY SSF53850 92 299 2.58E-47 T 11-10-2018 APT56_20290 cd8180d428f2721b79de08dc469abfee 252 Pfam PF00588 SpoU rRNA Methylase family 1 151 2.1E-34 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APT56_20290 cd8180d428f2721b79de08dc469abfee 252 Gene3D G3DSA:1.10.8.590 180 241 8.2E-19 T 11-10-2018 APT56_20290 cd8180d428f2721b79de08dc469abfee 252 PIRSF PIRSF004808 1 247 4.1E-58 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 APT56_20290 cd8180d428f2721b79de08dc469abfee 252 Gene3D G3DSA:3.40.1280.10 1 164 2.2E-53 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT56_20290 cd8180d428f2721b79de08dc469abfee 252 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 238 2.3E-50 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 APT56_20290 cd8180d428f2721b79de08dc469abfee 252 SUPERFAMILY SSF75217 2 162 5.3E-30 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APT56_19480 4f4a7100217824dfc554848b70455991 732 Gene3D G3DSA:2.40.170.20 191 732 2.2E-138 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_19480 4f4a7100217824dfc554848b70455991 732 Pfam PF07660 Secretin and TonB N terminus short domain 1 41 1.0E-8 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_19480 4f4a7100217824dfc554848b70455991 732 Gene3D G3DSA:3.55.50.30 1 49 3.4E-12 T 11-10-2018 APT56_19480 4f4a7100217824dfc554848b70455991 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 82 180 1.9E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_19480 4f4a7100217824dfc554848b70455991 732 Gene3D G3DSA:2.170.130.10 61 187 6.0E-29 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_19480 4f4a7100217824dfc554848b70455991 732 SMART SM00965 1 42 2.8E-5 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_19480 4f4a7100217824dfc554848b70455991 732 Pfam PF00593 TonB dependent receptor 276 730 3.8E-59 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_19480 4f4a7100217824dfc554848b70455991 732 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 83 730 4.0E-116 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_19480 4f4a7100217824dfc554848b70455991 732 SUPERFAMILY SSF56935 42 731 5.5E-124 T 11-10-2018 APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 Gene3D G3DSA:2.60.40.10 8 102 9.9E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 SUPERFAMILY SSF51445 93 505 1.76E-103 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 PIRSF PIRSF006337 7 578 5.4E-212 T 11-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 20 548 9.2E-202 T 11-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 Gene3D G3DSA:1.10.10.760 435 477 2.7E-159 T 11-10-2018 APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 Pfam PF11941 Domain of unknown function (DUF3459) 495 588 1.6E-13 T 11-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 SMART SM00642 118 450 5.5E-12 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 SUPERFAMILY SSF81296 9 95 4.2E-13 T 11-10-2018 IPR014756 Immunoglobulin E-set APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 Pfam PF00128 Alpha amylase, catalytic domain 229 427 1.8E-5 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 Pfam PF00128 Alpha amylase, catalytic domain 125 208 1.6E-12 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APT56_13665 c0e7081afee7c724f39a2ebe6542d534 595 Gene3D G3DSA:3.20.20.80 106 504 2.7E-159 T 11-10-2018 APT56_04300 04cf2ddb2897dda88fc6c797745b6e13 142 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 117 2.0E-59 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 APT56_04300 04cf2ddb2897dda88fc6c797745b6e13 142 Pfam PF02381 MraZ protein, putative antitoxin-like 73 120 1.5E-10 T 11-10-2018 IPR020603 MraZ domain APT56_04300 04cf2ddb2897dda88fc6c797745b6e13 142 Pfam PF02381 MraZ protein, putative antitoxin-like 2 69 2.6E-13 T 11-10-2018 IPR020603 MraZ domain APT56_04300 04cf2ddb2897dda88fc6c797745b6e13 142 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 142 48.166 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 APT56_04300 04cf2ddb2897dda88fc6c797745b6e13 142 Gene3D G3DSA:2.40.330.20 1 137 3.4E-36 T 11-10-2018 IPR038619 MraZ superfamily APT56_04300 04cf2ddb2897dda88fc6c797745b6e13 142 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 129 6.4E-35 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 APT56_04300 04cf2ddb2897dda88fc6c797745b6e13 142 SUPERFAMILY SSF89447 2 128 2.47E-37 T 11-10-2018 IPR037914 SpoVT-AbrB domain superfamily APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 SUPERFAMILY SSF53850 95 301 2.02E-36 T 11-10-2018 APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 Pfam PF03466 LysR substrate binding domain 93 299 3.6E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 Gene3D G3DSA:3.40.190.290 95 305 1.2E-36 T 11-10-2018 APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 Gene3D G3DSA:1.10.10.10 6 93 1.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 6.1E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.3E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16780 1ed7a331bc65dc5ebf6fd2f41c33c154 319 SUPERFAMILY SSF46785 11 115 3.02E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08075 2a3370b05c3fdf46859de675eb92c63c 304 Pfam PF05675 Protein of unknown function (DUF817) 38 274 4.6E-106 T 11-10-2018 IPR008535 Protein of unknown function DUF817 APT56_08075 2a3370b05c3fdf46859de675eb92c63c 304 PIRSF PIRSF009141 29 291 3.5E-101 T 11-10-2018 IPR008535 Protein of unknown function DUF817 APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 SUPERFAMILY SSF46785 1 75 4.76E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 SUPERFAMILY SSF53850 80 286 5.03E-44 T 11-10-2018 APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 Gene3D G3DSA:3.40.190.10 161 259 2.3E-63 T 11-10-2018 APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 Gene3D G3DSA:1.10.10.10 1 79 3.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 45 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 13 24 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 34 5.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 54 3.8E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 Gene3D G3DSA:3.40.190.10 82 283 2.3E-63 T 11-10-2018 APT56_13300 eb8ffa3b81609ff6c28d476347792a8f 303 Pfam PF03466 LysR substrate binding domain 85 288 7.7E-25 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_08275 f99b4365682d0e1d9e103463667933d9 232 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 11 185 1.1E-67 T 11-10-2018 IPR022301 Integral membrane protein YjbE APT56_08275 f99b4365682d0e1d9e103463667933d9 232 Pfam PF03741 Integral membrane protein TerC family 14 183 2.6E-44 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 APT56_24345 b18fc23a53bca5e35f40e0f3cf4546ea 272 Gene3D G3DSA:3.20.20.70 1 271 2.0E-95 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_24345 b18fc23a53bca5e35f40e0f3cf4546ea 272 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 17 248 2.0E-29 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_24345 b18fc23a53bca5e35f40e0f3cf4546ea 272 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 3 253 6.1E-69 T 11-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_24345 b18fc23a53bca5e35f40e0f3cf4546ea 272 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 90 103 - T 11-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_24345 b18fc23a53bca5e35f40e0f3cf4546ea 272 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 2 270 33.594 T 11-10-2018 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 APT56_24345 b18fc23a53bca5e35f40e0f3cf4546ea 272 SUPERFAMILY SSF51366 2 267 1.48E-73 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_24345 b18fc23a53bca5e35f40e0f3cf4546ea 272 SMART SM00934 17 257 4.6E-52 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APT56_13700 88828e309ee6f204cd162a12351536be 400 Gene3D G3DSA:3.30.870.10 2 180 5.6E-33 T 11-10-2018 APT56_13700 88828e309ee6f204cd162a12351536be 400 SUPERFAMILY SSF56024 182 344 4.26E-35 T 11-10-2018 APT56_13700 88828e309ee6f204cd162a12351536be 400 Hamap MF_01917 Cardiolipin synthase B [clsB]. 5 382 48.997 T 11-10-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 APT56_13700 88828e309ee6f204cd162a12351536be 400 Gene3D G3DSA:3.30.870.10 196 364 3.2E-23 T 11-10-2018 APT56_13700 88828e309ee6f204cd162a12351536be 400 SMART SM00155 111 138 1.3E-4 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_13700 88828e309ee6f204cd162a12351536be 400 SMART SM00155 284 311 17.0 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_13700 88828e309ee6f204cd162a12351536be 400 Pfam PF13091 PLD-like domain 30 157 5.9E-13 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_13700 88828e309ee6f204cd162a12351536be 400 Pfam PF13091 PLD-like domain 215 338 4.1E-24 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_13700 88828e309ee6f204cd162a12351536be 400 SUPERFAMILY SSF56024 7 170 2.2E-38 T 11-10-2018 APT56_21710 4c333068f4bcdb34d7aeb6c49cacf571 113 SUPERFAMILY SSF47413 52 104 7.09E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_21710 4c333068f4bcdb34d7aeb6c49cacf571 113 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 20 104 1.3E-16 T 11-10-2018 IPR014057 Uncharacterized protein HI1420 APT56_14120 be391e814b76789ff9cfd6bad15d40f3 1174 Pfam PF03797 Autotransporter beta-domain 900 1154 1.2E-58 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_14120 be391e814b76789ff9cfd6bad15d40f3 1174 SMART SM00869 897 1164 2.0E-45 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_14120 be391e814b76789ff9cfd6bad15d40f3 1174 Pfam PF12951 Passenger-associated-transport-repeat 588 617 8.8E-5 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14120 be391e814b76789ff9cfd6bad15d40f3 1174 Pfam PF12951 Passenger-associated-transport-repeat 500 529 2.1E-4 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_14120 be391e814b76789ff9cfd6bad15d40f3 1174 Gene3D G3DSA:2.40.128.130 831 1174 1.7E-69 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_14120 be391e814b76789ff9cfd6bad15d40f3 1174 SUPERFAMILY SSF51126 299 733 3.77E-22 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_14120 be391e814b76789ff9cfd6bad15d40f3 1174 SUPERFAMILY SSF103515 837 1174 4.97E-62 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_14120 be391e814b76789ff9cfd6bad15d40f3 1174 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 658 1174 6.0E-49 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 APT56_10955 85e9b28924bb0a6e7547b5af999d718b 438 Pfam PF00202 Aminotransferase class-III 24 433 4.4E-98 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_10955 85e9b28924bb0a6e7547b5af999d718b 438 PIRSF PIRSF000521 190 435 6.4E-17 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_10955 85e9b28924bb0a6e7547b5af999d718b 438 PIRSF PIRSF000521 18 141 6.1E-8 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_10955 85e9b28924bb0a6e7547b5af999d718b 438 SUPERFAMILY SSF53383 9 433 4.95E-120 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_10955 85e9b28924bb0a6e7547b5af999d718b 438 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 247 284 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_10955 85e9b28924bb0a6e7547b5af999d718b 438 Gene3D G3DSA:3.90.1150.10 23 428 6.8E-146 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_10955 85e9b28924bb0a6e7547b5af999d718b 438 Gene3D G3DSA:3.40.640.10 60 339 6.8E-146 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 365 379 4.5E-28 T 11-10-2018 IPR003004 GspF/PilC family APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 162 190 4.5E-28 T 11-10-2018 IPR003004 GspF/PilC family APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 63 75 4.5E-28 T 11-10-2018 IPR003004 GspF/PilC family APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 381 400 4.5E-28 T 11-10-2018 IPR003004 GspF/PilC family APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 Gene3D G3DSA:1.20.81.30 51 169 2.1E-29 T 11-10-2018 APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 400 1.6E-157 T 11-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 Gene3D G3DSA:1.20.81.30 253 365 9.6E-24 T 11-10-2018 APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 Pfam PF00482 Type II secretion system (T2SS), protein F 68 190 7.7E-33 T 11-10-2018 IPR018076 Type II secretion system F domain APT56_11625 d18ec8fa8f7ab7aea8998b8af4a51d2e 401 Pfam PF00482 Type II secretion system (T2SS), protein F 270 392 1.3E-26 T 11-10-2018 IPR018076 Type II secretion system F domain APT56_01040 9d13b702cfd6f759ea9c6dd73f3a165b 323 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 3.9E-39 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_01040 9d13b702cfd6f759ea9c6dd73f3a165b 323 Gene3D G3DSA:1.10.3720.10 85 314 5.5E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01040 9d13b702cfd6f759ea9c6dd73f3a165b 323 SUPERFAMILY SSF161098 92 305 2.07E-18 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15645 d236ca4189b5449f9bc467ef4c10bb95 299 SUPERFAMILY SSF46785 3 111 8.3E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15645 d236ca4189b5449f9bc467ef4c10bb95 299 Gene3D G3DSA:1.10.10.10 2 91 9.3E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15645 d236ca4189b5449f9bc467ef4c10bb95 299 Gene3D G3DSA:3.40.190.10 92 294 2.4E-55 T 11-10-2018 APT56_15645 d236ca4189b5449f9bc467ef4c10bb95 299 Gene3D G3DSA:3.40.190.10 165 270 2.4E-55 T 11-10-2018 APT56_15645 d236ca4189b5449f9bc467ef4c10bb95 299 Pfam PF03466 LysR substrate binding domain 88 297 3.4E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_15645 d236ca4189b5449f9bc467ef4c10bb95 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.1E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15645 d236ca4189b5449f9bc467ef4c10bb95 299 SUPERFAMILY SSF53850 90 297 2.64E-35 T 11-10-2018 APT56_11710 8bdfad67cdde043f0a1810dfd8e75ff0 725 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 12 724 1.2E-290 T 11-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_11710 8bdfad67cdde043f0a1810dfd8e75ff0 725 Pfam PF05506 Domain of unknown function (DUF756) 528 616 3.0E-24 T 11-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_11710 8bdfad67cdde043f0a1810dfd8e75ff0 725 Pfam PF05506 Domain of unknown function (DUF756) 628 710 5.7E-21 T 11-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_11710 8bdfad67cdde043f0a1810dfd8e75ff0 725 Pfam PF04185 Phosphoesterase family 54 456 3.6E-111 T 11-10-2018 IPR007312 Phosphoesterase GO:0016788 APT56_11710 8bdfad67cdde043f0a1810dfd8e75ff0 725 Gene3D G3DSA:3.40.720.10 43 205 2.2E-30 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_11710 8bdfad67cdde043f0a1810dfd8e75ff0 725 Gene3D G3DSA:3.40.720.10 269 505 1.4E-51 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_00835 a855fa6af618e70ec7c914233922da50 392 Gene3D G3DSA:1.10.540.10 2 125 1.0E-49 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_00835 a855fa6af618e70ec7c914233922da50 392 Gene3D G3DSA:1.20.140.10 240 392 1.7E-44 T 11-10-2018 APT56_00835 a855fa6af618e70ec7c914233922da50 392 SUPERFAMILY SSF56645 6 247 3.14E-88 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_00835 a855fa6af618e70ec7c914233922da50 392 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_00835 a855fa6af618e70ec7c914233922da50 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 123 4.2E-38 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_00835 a855fa6af618e70ec7c914233922da50 392 PIRSF PIRSF016578 142 392 1.5E-11 T 11-10-2018 APT56_00835 a855fa6af618e70ec7c914233922da50 392 PIRSF PIRSF016578 13 99 0.0019 T 11-10-2018 APT56_00835 a855fa6af618e70ec7c914233922da50 392 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 346 365 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_00835 a855fa6af618e70ec7c914233922da50 392 Gene3D G3DSA:2.40.110.10 126 239 2.8E-46 T 11-10-2018 APT56_00835 a855fa6af618e70ec7c914233922da50 392 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 387 1.0E-38 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_00835 a855fa6af618e70ec7c914233922da50 392 SUPERFAMILY SSF47203 233 388 1.61E-43 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_00835 a855fa6af618e70ec7c914233922da50 392 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 2.0E-27 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_11230 fa6b28134b5af6af856be362c41ede90 247 Gene3D G3DSA:1.10.10.10 5 74 1.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11230 fa6b28134b5af6af856be362c41ede90 247 Pfam PF07702 UTRA domain 129 233 3.7E-11 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_11230 fa6b28134b5af6af856be362c41ede90 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 3.1E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11230 fa6b28134b5af6af856be362c41ede90 247 SMART SM00345 18 77 1.7E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11230 fa6b28134b5af6af856be362c41ede90 247 SMART SM00866 102 238 3.6E-7 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_11230 fa6b28134b5af6af856be362c41ede90 247 SUPERFAMILY SSF46785 9 79 9.98E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11230 fa6b28134b5af6af856be362c41ede90 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 7.0E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11230 fa6b28134b5af6af856be362c41ede90 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 7.0E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_11230 fa6b28134b5af6af856be362c41ede90 247 Gene3D G3DSA:3.40.1410.10 75 230 2.6E-16 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_11230 fa6b28134b5af6af856be362c41ede90 247 SUPERFAMILY SSF64288 65 242 5.02E-22 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 SUPERFAMILY SSF52821 178 298 3.14E-33 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 Gene3D G3DSA:3.40.250.10 165 299 1.7E-37 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 SUPERFAMILY SSF52821 26 156 1.44E-33 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 SMART SM00450 31 145 6.8E-17 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 SMART SM00450 169 295 2.2E-20 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 Gene3D G3DSA:3.40.250.10 19 160 1.6E-40 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 Pfam PF00581 Rhodanese-like domain 32 141 6.6E-16 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 Pfam PF00581 Rhodanese-like domain 180 290 6.2E-17 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 ProSitePatterns PS00683 Rhodanese C-terminal signature. 279 289 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 APT56_13205 bb6dd206b95e12b5dfce2c01bb3e6848 308 ProSitePatterns PS00380 Rhodanese signature 1. 57 68 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 APT56_09605 8927391447174b92f3683aafe5742114 380 Gene3D G3DSA:3.40.50.2000 170 348 2.9E-42 T 11-10-2018 APT56_09605 8927391447174b92f3683aafe5742114 380 SUPERFAMILY SSF53756 3 366 8.07E-64 T 11-10-2018 APT56_09605 8927391447174b92f3683aafe5742114 380 Pfam PF13439 Glycosyltransferase Family 4 13 155 1.8E-14 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_09605 8927391447174b92f3683aafe5742114 380 Gene3D G3DSA:3.40.50.2000 1 169 3.1E-14 T 11-10-2018 APT56_09605 8927391447174b92f3683aafe5742114 380 Pfam PF00534 Glycosyl transferases group 1 176 343 4.6E-31 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.6E-29 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 PRINTS PR00050 Cold shock protein signature 25 34 8.0E-15 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 PRINTS PR00050 Cold shock protein signature 40 58 8.0E-15 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 PRINTS PR00050 Cold shock protein signature 4 19 8.0E-15 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 SMART SM00357 3 67 7.9E-28 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 SUPERFAMILY SSF50249 1 66 1.37E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 PIRSF PIRSF002599 1 68 2.5E-25 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 APT56_17750 f3c755850c44679ef4e9bd2f13eca385 68 Gene3D G3DSA:2.40.50.140 2 66 1.6E-28 T 11-10-2018 APT56_13250 eee7dafb71ed6fbc326f4dd1f57fb2c6 381 Gene3D G3DSA:2.120.10.30 19 313 1.4E-8 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_13250 eee7dafb71ed6fbc326f4dd1f57fb2c6 381 SUPERFAMILY SSF82171 32 201 2.2E-7 T 11-10-2018 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 SUPERFAMILY SSF110921 449 553 2.62E-33 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 7 555 53.754 T 11-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 41 57 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 Pfam PF00682 HMGL-like 34 312 4.2E-78 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 SUPERFAMILY SSF51569 23 331 1.34E-101 T 11-10-2018 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 SUPERFAMILY SSF89000 389 439 7.45E-15 T 11-10-2018 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 SMART SM00917 423 554 3.1E-32 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 Gene3D G3DSA:3.30.160.270 378 553 5.8E-60 T 11-10-2018 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 Gene3D G3DSA:3.20.20.70 16 377 5.3E-155 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 6 554 5.3E-239 T 11-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 Pfam PF08502 LeuA allosteric (dimerisation) domain 423 552 2.0E-29 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT56_00955 65d3dfb79d2d6d246d0a778b7fd8b9e2 569 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 244 257 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APT56_17180 4d685dce9ee9b4f27a7bd15e7622fc69 222 SUPERFAMILY SSF53335 45 191 6.55E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_17180 4d685dce9ee9b4f27a7bd15e7622fc69 222 Pfam PF13578 Methyltransferase domain 85 188 8.4E-16 T 11-10-2018 APT56_17180 4d685dce9ee9b4f27a7bd15e7622fc69 222 Gene3D G3DSA:3.40.50.150 30 209 3.5E-42 T 11-10-2018 APT56_16435 c20cafe60a2d0c1689db483e8059ab0d 372 SUPERFAMILY SSF56935 30 372 4.19E-76 T 11-10-2018 APT56_16435 c20cafe60a2d0c1689db483e8059ab0d 372 PRINTS PR00184 Neisseria sp. porin signature 312 336 6.0E-6 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_16435 c20cafe60a2d0c1689db483e8059ab0d 372 PRINTS PR00184 Neisseria sp. porin signature 62 87 6.0E-6 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_16435 c20cafe60a2d0c1689db483e8059ab0d 372 Pfam PF13609 Gram-negative porin 22 340 4.5E-49 T 11-10-2018 APT56_16435 c20cafe60a2d0c1689db483e8059ab0d 372 Gene3D G3DSA:2.40.160.10 30 372 7.0E-83 T 11-10-2018 IPR023614 Porin domain superfamily APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Gene3D G3DSA:3.30.420.110 138 270 4.2E-31 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Pfam PF05188 MutS domain II 140 263 2.8E-17 T 11-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Gene3D G3DSA:1.10.1420.10 407 524 1.2E-95 T 11-10-2018 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Gene3D G3DSA:1.10.1420.10 276 580 1.2E-95 T 11-10-2018 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 SUPERFAMILY SSF52540 588 817 3.82E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Pfam PF01624 MutS domain I 17 128 6.4E-40 T 11-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Pfam PF00488 MutS domain V 631 817 3.6E-80 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 SMART SM00534 627 814 1.8E-105 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 SUPERFAMILY SSF53150 126 290 6.8E-36 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 16 875 24.617 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Pfam PF05192 MutS domain III 280 580 3.2E-35 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 SMART SM00533 293 612 1.6E-86 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 SUPERFAMILY SSF48334 277 586 6.41E-85 T 11-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 SUPERFAMILY SSF55271 12 124 3.14E-40 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 PIRSF PIRSF037677 222 860 4.9E-114 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 PIRSF PIRSF037677 5 193 7.3E-22 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Pfam PF05190 MutS family domain IV 449 540 9.5E-30 T 11-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Gene3D G3DSA:3.40.1170.10 8 130 1.9E-47 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 708 724 - T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 Gene3D G3DSA:3.40.50.300 589 882 9.6E-93 T 11-10-2018 APT56_20460 40f9fc2cd163d833e79220b7d0fd3eca 884 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 16 881 0.0 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 APT56_26285 a3789d13f2b7023bde0393acf0053d05 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.5E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26285 a3789d13f2b7023bde0393acf0053d05 314 SUPERFAMILY SSF53850 90 306 1.1E-31 T 11-10-2018 APT56_26285 a3789d13f2b7023bde0393acf0053d05 314 SUPERFAMILY SSF46785 3 112 4.43E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26285 a3789d13f2b7023bde0393acf0053d05 314 Gene3D G3DSA:3.40.190.10 92 300 1.5E-45 T 11-10-2018 APT56_26285 a3789d13f2b7023bde0393acf0053d05 314 Gene3D G3DSA:1.10.10.10 2 89 3.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26285 a3789d13f2b7023bde0393acf0053d05 314 Gene3D G3DSA:3.40.190.10 162 274 1.5E-45 T 11-10-2018 APT56_26285 a3789d13f2b7023bde0393acf0053d05 314 Pfam PF03466 LysR substrate binding domain 88 301 1.9E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_08415 2f484b44c1582cf6fca0ec669ed6e7d1 127 Pfam PF00816 H-NS histone family 12 118 3.7E-23 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 APT56_08415 2f484b44c1582cf6fca0ec669ed6e7d1 127 Gene3D G3DSA:4.10.430.10 78 127 1.9E-17 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 APT56_08415 2f484b44c1582cf6fca0ec669ed6e7d1 127 SUPERFAMILY SSF81273 84 126 7.06E-11 T 11-10-2018 APT56_08415 2f484b44c1582cf6fca0ec669ed6e7d1 127 SMART SM00528 81 125 7.4E-19 T 11-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 159 2.0E-36 T 11-10-2018 IPR023635 Peptide deformylase APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 SUPERFAMILY SSF56420 1 165 2.88E-58 T 11-10-2018 IPR036821 Peptide deformylase superfamily APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 PIRSF PIRSF004749 1 168 2.8E-48 T 11-10-2018 IPR023635 Peptide deformylase APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 Hamap MF_00163 Peptide deformylase [def]. 1 166 26.784 T 11-10-2018 IPR023635 Peptide deformylase APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 Pfam PF01327 Polypeptide deformylase 3 158 1.4E-48 T 11-10-2018 IPR023635 Peptide deformylase APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 PRINTS PR01576 Peptide deformylase signature 97 108 4.2E-30 T 11-10-2018 IPR023635 Peptide deformylase APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 PRINTS PR01576 Peptide deformylase signature 128 157 4.2E-30 T 11-10-2018 IPR023635 Peptide deformylase APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 PRINTS PR01576 Peptide deformylase signature 33 62 4.2E-30 T 11-10-2018 IPR023635 Peptide deformylase APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 PRINTS PR01576 Peptide deformylase signature 109 127 4.2E-30 T 11-10-2018 IPR023635 Peptide deformylase APT56_04670 f63886bf0bd22d36238ac90d244b44ab 177 Gene3D G3DSA:3.90.45.10 1 177 1.3E-67 T 11-10-2018 IPR036821 Peptide deformylase superfamily APT56_11155 9359eb964632291402a3d438531a7487 195 Gene3D G3DSA:3.90.1720.10 16 195 6.9E-71 T 11-10-2018 APT56_11155 9359eb964632291402a3d438531a7487 195 SUPERFAMILY SSF54001 17 192 2.4E-44 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APT56_11155 9359eb964632291402a3d438531a7487 195 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 18 192 1.1E-44 T 11-10-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 619 42.792 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 Gene3D G3DSA:3.90.640.10 236 313 1.1E-111 T 11-10-2018 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 Gene3D G3DSA:2.60.34.10 382 523 3.7E-48 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 Pfam PF00012 Hsp70 protein 21 602 5.4E-179 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 Gene3D G3DSA:3.30.420.40 192 363 1.1E-111 T 11-10-2018 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 SUPERFAMILY SSF53067 19 194 2.43E-50 T 11-10-2018 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 Gene3D G3DSA:3.30.420.40 22 376 1.1E-111 T 11-10-2018 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 SUPERFAMILY SSF100934 507 618 1.77E-31 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 Gene3D G3DSA:1.20.1270.10 524 618 1.1E-25 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 334 348 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 SUPERFAMILY SSF53067 198 378 4.98E-51 T 11-10-2018 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 618 1.1E-275 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 PRINTS PR00301 70kDa heat shock protein signature 388 407 2.6E-54 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 PRINTS PR00301 70kDa heat shock protein signature 331 347 2.6E-54 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 PRINTS PR00301 70kDa heat shock protein signature 150 170 2.6E-54 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 PRINTS PR00301 70kDa heat shock protein signature 209 219 2.6E-54 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 PRINTS PR00301 70kDa heat shock protein signature 48 60 2.6E-54 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 PRINTS PR00301 70kDa heat shock protein signature 469 485 2.6E-54 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 PRINTS PR00301 70kDa heat shock protein signature 362 382 2.6E-54 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 PRINTS PR00301 70kDa heat shock protein signature 20 33 2.6E-54 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 SUPERFAMILY SSF100920 387 537 4.84E-48 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 APT56_17670 8d5961b9d15bf832d278ae786fd25dd6 620 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 203 216 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_07625 5a450cbbfd5c95f2854c286586fc3323 385 Pfam PF13406 Transglycosylase SLT domain 74 376 1.4E-82 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 APT56_07625 5a450cbbfd5c95f2854c286586fc3323 385 Gene3D G3DSA:1.10.530.10 114 379 2.2E-87 T 11-10-2018 APT56_07625 5a450cbbfd5c95f2854c286586fc3323 385 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 78 379 5.2E-108 T 11-10-2018 IPR011757 Lytic transglycosylase MltB APT56_07625 5a450cbbfd5c95f2854c286586fc3323 385 SUPERFAMILY SSF53955 64 380 8.72E-76 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_07625 5a450cbbfd5c95f2854c286586fc3323 385 Gene3D G3DSA:1.10.8.350 76 249 2.2E-87 T 11-10-2018 APT56_17270 b34ffad2d40e8a1fe4cc8376e16c4e31 257 SUPERFAMILY SSF56935 77 257 2.75E-5 T 11-10-2018 APT56_17270 b34ffad2d40e8a1fe4cc8376e16c4e31 257 Pfam PF06629 MltA-interacting protein MipA 33 257 1.3E-45 T 11-10-2018 IPR010583 MltA-interacting MipA APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 Pfam PF00672 HAMP domain 179 227 8.8E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 SMART SM00387 330 441 1.1E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 SUPERFAMILY SSF47384 217 286 2.75E-8 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 Gene3D G3DSA:3.30.565.10 293 438 1.9E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 Gene3D G3DSA:1.10.287.130 183 289 1.2E-16 T 11-10-2018 APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 SMART SM00304 179 231 4.6E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 SUPERFAMILY SSF55874 287 437 1.22E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 332 436 4.4E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 380 9.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 419 9.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 394 9.5E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_20850 f061acddd987ea4d91bb7072a6d17eca 441 SMART SM00388 232 290 0.0021 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_25400 517e2757d0b52b9a811487dc1e254859 468 Pfam PF13644 DKNYY family 48 232 1.1E-9 T 11-10-2018 IPR027375 DKNYY family APT56_09650 a6a7ae9020536239e1e9fde13d367603 455 PRINTS PR00811 Bacterial general secretion pathway protein D signature 383 397 2.0E-10 T 11-10-2018 IPR001775 GspD/PilQ family APT56_09650 a6a7ae9020536239e1e9fde13d367603 455 PRINTS PR00811 Bacterial general secretion pathway protein D signature 360 378 2.0E-10 T 11-10-2018 IPR001775 GspD/PilQ family APT56_09650 a6a7ae9020536239e1e9fde13d367603 455 PRINTS PR00811 Bacterial general secretion pathway protein D signature 162 172 2.0E-10 T 11-10-2018 IPR001775 GspD/PilQ family APT56_09650 a6a7ae9020536239e1e9fde13d367603 455 PRINTS PR00811 Bacterial general secretion pathway protein D signature 235 259 2.0E-10 T 11-10-2018 IPR001775 GspD/PilQ family APT56_09650 a6a7ae9020536239e1e9fde13d367603 455 Pfam PF13629 Pilus formation protein N terminal region 29 94 1.6E-13 T 11-10-2018 IPR032789 Pilus formation protein, N-terminal APT56_09650 a6a7ae9020536239e1e9fde13d367603 455 Pfam PF00263 Bacterial type II and III secretion system protein 239 395 5.1E-43 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 APT56_17800 ca2b47d5fefb3fa1cff63462d712ddb5 132 Gene3D G3DSA:3.30.1330.40 4 132 2.7E-31 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_17800 ca2b47d5fefb3fa1cff63462d712ddb5 132 SUPERFAMILY SSF55298 1 131 2.2E-26 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_17800 ca2b47d5fefb3fa1cff63462d712ddb5 132 Pfam PF01042 Endoribonuclease L-PSP 18 130 1.1E-17 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_08070 b61a45c3a441c7eaa490ad02b3eaf1e8 265 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 11 265 35.342 T 11-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 APT56_08070 b61a45c3a441c7eaa490ad02b3eaf1e8 265 Gene3D G3DSA:3.10.270.10 9 264 6.0E-92 T 11-10-2018 APT56_08070 b61a45c3a441c7eaa490ad02b3eaf1e8 265 Pfam PF02649 Type I GTP cyclohydrolase folE2 11 261 2.1E-88 T 11-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 APT56_17040 ec17396d865e0ae2fc32050e930acd24 320 Gene3D G3DSA:1.10.10.10 15 103 1.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17040 ec17396d865e0ae2fc32050e930acd24 320 Gene3D G3DSA:3.40.190.10 105 288 1.4E-32 T 11-10-2018 APT56_17040 ec17396d865e0ae2fc32050e930acd24 320 Gene3D G3DSA:3.40.190.10 178 281 1.4E-32 T 11-10-2018 APT56_17040 ec17396d865e0ae2fc32050e930acd24 320 Pfam PF03466 LysR substrate binding domain 101 304 2.8E-32 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_17040 ec17396d865e0ae2fc32050e930acd24 320 SUPERFAMILY SSF46785 13 124 1.2E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17040 ec17396d865e0ae2fc32050e930acd24 320 SUPERFAMILY SSF53850 102 310 1.33E-32 T 11-10-2018 APT56_17040 ec17396d865e0ae2fc32050e930acd24 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 76 2.9E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15690 4aab1b60bea75e054e91694b4a552fe8 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 9 115 2.3E-17 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_15690 4aab1b60bea75e054e91694b4a552fe8 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 49 221 1.7E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_15690 4aab1b60bea75e054e91694b4a552fe8 229 Gene3D G3DSA:1.10.3720.10 6 223 5.9E-46 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15690 4aab1b60bea75e054e91694b4a552fe8 229 SUPERFAMILY SSF161098 11 204 8.24E-39 T 11-10-2018 IPR035906 MetI-like superfamily APT56_10365 48f4083020e88ab686f56a98096d85b7 197 Pfam PF04366 Las17-binding protein actin regulator 110 193 3.7E-14 T 11-10-2018 IPR007461 Ysc84 actin-binding domain APT56_20190 532c6d5459033eb021aa9eff13ca1f54 555 TIGRFAM TIGR03397 acid_phos_Burk: acid phosphatase, Burkholderia-type 59 553 3.5E-227 T 11-10-2018 IPR017768 Acid phosphatase, AcpA GO:0003993 APT56_20190 532c6d5459033eb021aa9eff13ca1f54 555 Pfam PF04185 Phosphoesterase family 59 524 1.0E-101 T 11-10-2018 IPR007312 Phosphoesterase GO:0016788 APT56_20190 532c6d5459033eb021aa9eff13ca1f54 555 SUPERFAMILY SSF53649 186 524 8.11E-18 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APT56_20190 532c6d5459033eb021aa9eff13ca1f54 555 Gene3D G3DSA:3.40.720.10 50 239 3.6E-24 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_20190 532c6d5459033eb021aa9eff13ca1f54 555 Gene3D G3DSA:3.40.720.10 411 555 1.8E-36 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_26625 b5ff4d38f62638d45e6328de0584f685 181 PIRSF PIRSF006707 1 174 1.0E-54 T 11-10-2018 IPR026282 DNA-binding protein, MJ1563 type APT56_26625 b5ff4d38f62638d45e6328de0584f685 181 SUPERFAMILY SSF46785 4 149 4.49E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26625 b5ff4d38f62638d45e6328de0584f685 181 Gene3D G3DSA:1.10.10.10 1 86 7.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26625 b5ff4d38f62638d45e6328de0584f685 181 Pfam PF12802 MarR family 26 80 3.1E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_16385 4fb3adc78eb778caf4aef1306d60ee4d 176 SUPERFAMILY SSF54292 14 89 5.51E-22 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_16385 4fb3adc78eb778caf4aef1306d60ee4d 176 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 50 58 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT56_16385 4fb3adc78eb778caf4aef1306d60ee4d 176 SUPERFAMILY SSF47741 95 163 9.81E-25 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily APT56_16385 4fb3adc78eb778caf4aef1306d60ee4d 176 Gene3D G3DSA:3.10.20.30 10 85 2.0E-26 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_16385 4fb3adc78eb778caf4aef1306d60ee4d 176 Gene3D G3DSA:1.10.150.120 86 173 4.6E-25 T 11-10-2018 APT56_16385 4fb3adc78eb778caf4aef1306d60ee4d 176 Pfam PF01799 [2Fe-2S] binding domain 84 156 1.7E-22 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 APT56_16385 4fb3adc78eb778caf4aef1306d60ee4d 176 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 17 73 1.9E-6 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_01680 f16ba4fe27f6d74009e83cf0880aa37a 468 Pfam PF00324 Amino acid permease 16 450 8.9E-108 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 APT56_01680 f16ba4fe27f6d74009e83cf0880aa37a 468 Gene3D G3DSA:1.20.1740.10 8 453 1.6E-66 T 11-10-2018 APT56_01680 f16ba4fe27f6d74009e83cf0880aa37a 468 PIRSF PIRSF006060 1 465 2.9E-71 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_01680 f16ba4fe27f6d74009e83cf0880aa37a 468 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 APT56_10560 ad50a32156b0cf0abc523f50684b4142 407 SMART SM00825 Beta-ketoacyl synthase 4 349 1.8E-9 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APT56_10560 ad50a32156b0cf0abc523f50684b4142 407 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 363 4.9E-29 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal APT56_10560 ad50a32156b0cf0abc523f50684b4142 407 SUPERFAMILY SSF53901 1 251 1.2E-60 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_10560 ad50a32156b0cf0abc523f50684b4142 407 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site APT56_10560 ad50a32156b0cf0abc523f50684b4142 407 Gene3D G3DSA:3.40.47.10 260 406 1.1E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_10560 ad50a32156b0cf0abc523f50684b4142 407 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 246 1.3E-45 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal APT56_10560 ad50a32156b0cf0abc523f50684b4142 407 Gene3D G3DSA:3.40.47.10 1 254 1.0E-62 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_10560 ad50a32156b0cf0abc523f50684b4142 407 SUPERFAMILY SSF53901 215 406 5.94E-61 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20795 cccf38649d071025f16a4660ce1fd975 262 Gene3D G3DSA:3.60.110.10 1 260 1.2E-72 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_20795 cccf38649d071025f16a4660ce1fd975 262 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 143 163 - T 11-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site APT56_20795 cccf38649d071025f16a4660ce1fd975 262 Pfam PF00795 Carbon-nitrogen hydrolase 15 245 9.2E-42 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_20795 cccf38649d071025f16a4660ce1fd975 262 SUPERFAMILY SSF56317 1 254 1.96E-67 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_27020 6b17914fb34b6487f0ef207a85e386de 591 SMART SM00487 20 222 2.2E-57 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_27020 6b17914fb34b6487f0ef207a85e386de 591 Pfam PF00270 DEAD/DEAH box helicase 25 195 1.4E-48 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_27020 6b17914fb34b6487f0ef207a85e386de 591 Gene3D G3DSA:3.40.50.300 213 381 5.9E-51 T 11-10-2018 APT56_27020 6b17914fb34b6487f0ef207a85e386de 591 SMART SM00490 259 340 4.3E-31 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_27020 6b17914fb34b6487f0ef207a85e386de 591 Pfam PF00271 Helicase conserved C-terminal domain 235 340 4.9E-27 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_27020 6b17914fb34b6487f0ef207a85e386de 591 SUPERFAMILY SSF52540 73 361 4.5E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27020 6b17914fb34b6487f0ef207a85e386de 591 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site APT56_27020 6b17914fb34b6487f0ef207a85e386de 591 Gene3D G3DSA:3.40.50.300 1 211 6.1E-78 T 11-10-2018 APT56_18580 5cb8f949f6f329b39608a178940e64f2 181 Pfam PF00857 Isochorismatase family 3 145 8.9E-36 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_18580 5cb8f949f6f329b39608a178940e64f2 181 Gene3D G3DSA:3.40.50.850 1 175 5.0E-44 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_18580 5cb8f949f6f329b39608a178940e64f2 181 SUPERFAMILY SSF52499 2 171 1.96E-43 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 Gene3D G3DSA:3.40.190.10 104 291 2.1E-43 T 11-10-2018 APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 Gene3D G3DSA:1.10.10.10 8 96 3.2E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 SUPERFAMILY SSF46785 6 87 2.09E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 Gene3D G3DSA:3.40.190.10 166 265 2.1E-43 T 11-10-2018 APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 SUPERFAMILY SSF53850 93 298 8.14E-34 T 11-10-2018 APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 Pfam PF03466 LysR substrate binding domain 92 294 3.4E-32 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_15070 b4bbcdaaa8b7929e851b506c55206bc5 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 4.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18210 fbd4fbe9e9d77d845603ab2550497e01 151 Gene3D G3DSA:2.60.120.1140 17 148 1.4E-40 T 11-10-2018 IPR038695 Saro_0823-like superfamily APT56_18210 fbd4fbe9e9d77d845603ab2550497e01 151 Pfam PF02643 Uncharacterized ACR, COG1430 46 147 2.2E-32 T 11-10-2018 IPR003795 Protein of unknown function DUF192 APT56_18010 fe229e09144fa57ff337662ae3e02a33 229 ProDom PD037589 AROM ARO OPERON REGULATED BY AROR BIOSYNTHESIS TRANSCRIPTION AMINO AROMATIC 8 227 4.0E-19 T 11-10-2018 IPR010843 Uncharacterised protein family AroM APT56_18010 fe229e09144fa57ff337662ae3e02a33 229 Pfam PF07302 AroM protein 9 228 2.4E-61 T 11-10-2018 IPR010843 Uncharacterised protein family AroM APT56_16275 856541531a54e5747e5356d7b7033c83 446 Pfam PF04286 Protein of unknown function (DUF445) 67 442 1.3E-104 T 11-10-2018 IPR007383 Protein of unknown function DUF445 APT56_03475 75cb19829faf3bf48efbda9c2268af23 237 SMART SM00382 30 231 1.5E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_03475 75cb19829faf3bf48efbda9c2268af23 237 SUPERFAMILY SSF52540 5 235 1.33E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03475 75cb19829faf3bf48efbda9c2268af23 237 Pfam PF00005 ABC transporter 22 165 4.5E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_03475 75cb19829faf3bf48efbda9c2268af23 237 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_03475 75cb19829faf3bf48efbda9c2268af23 237 Gene3D G3DSA:3.40.50.300 1 237 4.7E-59 T 11-10-2018 APT56_11130 827cdf04c3240712ab87c663848e8be3 327 Gene3D G3DSA:3.40.190.150 35 317 4.2E-98 T 11-10-2018 APT56_11130 827cdf04c3240712ab87c663848e8be3 327 PIRSF PIRSF017082 1 324 3.8E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_11130 827cdf04c3240712ab87c663848e8be3 327 Gene3D G3DSA:3.40.190.10 133 252 4.2E-98 T 11-10-2018 APT56_11130 827cdf04c3240712ab87c663848e8be3 327 SUPERFAMILY SSF53850 121 283 1.02E-15 T 11-10-2018 APT56_11130 827cdf04c3240712ab87c663848e8be3 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 316 3.6E-69 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_07090 200429bb551184a7acfeff7887ba5b12 173 Gene3D G3DSA:2.160.10.10 1 172 1.6E-56 T 11-10-2018 APT56_07090 200429bb551184a7acfeff7887ba5b12 173 SUPERFAMILY SSF51161 1 169 3.47E-42 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_07090 200429bb551184a7acfeff7887ba5b12 173 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 121 5.3E-9 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_00855 74324c017095f2daf45ed8a50f2690ba 107 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 2 105 3.5E-39 T 11-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 APT56_00855 74324c017095f2daf45ed8a50f2690ba 107 SUPERFAMILY SSF103481 7 104 1.44E-6 T 11-10-2018 APT56_00855 74324c017095f2daf45ed8a50f2690ba 107 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 1 105 24.516 T 11-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 APT56_18190 b1769fa4a57cfc003c65de76a6618f93 714 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 624 707 6.2E-17 T 11-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_18190 b1769fa4a57cfc003c65de76a6618f93 714 Gene3D G3DSA:1.10.3810.10 38 231 4.4E-50 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_18190 b1769fa4a57cfc003c65de76a6618f93 714 Gene3D G3DSA:3.40.710.10 272 589 1.0E-69 T 11-10-2018 APT56_18190 b1769fa4a57cfc003c65de76a6618f93 714 Pfam PF00912 Transglycosylase 44 215 7.8E-46 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_18190 b1769fa4a57cfc003c65de76a6618f93 714 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 26 621 5.8E-230 T 11-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_18190 b1769fa4a57cfc003c65de76a6618f93 714 Pfam PF00905 Penicillin binding protein transpeptidase domain 302 539 1.4E-17 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APT56_18190 b1769fa4a57cfc003c65de76a6618f93 714 SUPERFAMILY SSF53955 26 246 9.84E-61 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_18190 b1769fa4a57cfc003c65de76a6618f93 714 SUPERFAMILY SSF56601 197 625 6.24E-96 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_19615 103aa7f645c518537f264d339277899b 328 Pfam PF02779 Transketolase, pyrimidine binding domain 27 181 5.7E-34 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_19615 103aa7f645c518537f264d339277899b 328 SUPERFAMILY SSF52922 193 326 2.09E-32 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_19615 103aa7f645c518537f264d339277899b 328 Gene3D G3DSA:3.40.50.920 197 328 2.2E-36 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_19615 103aa7f645c518537f264d339277899b 328 Pfam PF02780 Transketolase, C-terminal domain 197 318 2.2E-29 T 11-10-2018 IPR033248 Transketolase, C-terminal domain APT56_19615 103aa7f645c518537f264d339277899b 328 Gene3D G3DSA:3.40.50.970 24 196 2.1E-52 T 11-10-2018 APT56_19615 103aa7f645c518537f264d339277899b 328 SMART SM00861 21 186 3.8E-40 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_19615 103aa7f645c518537f264d339277899b 328 SUPERFAMILY SSF52518 26 188 3.93E-48 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_07425 c89a898bc567273f8570541113ea4ba3 273 SUPERFAMILY SSF47240 80 262 8.12E-18 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_07425 c89a898bc567273f8570541113ea4ba3 273 PIRSF PIRSF012318 17 273 4.9E-91 T 11-10-2018 IPR011197 Uncharacterised conserved protein UCP012318 APT56_07425 c89a898bc567273f8570541113ea4ba3 273 Pfam PF04305 Protein of unknown function (DUF455) 49 268 5.1E-89 T 11-10-2018 IPR007402 Protein of unknown function DUF455 APT56_05915 721452da2392a3dea3b768c26c93ad61 405 Gene3D G3DSA:3.40.50.1100 50 146 5.7E-112 T 11-10-2018 APT56_05915 721452da2392a3dea3b768c26c93ad61 405 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 305 1.3E-75 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_05915 721452da2392a3dea3b768c26c93ad61 405 Gene3D G3DSA:3.40.50.1100 7 309 5.7E-112 T 11-10-2018 APT56_05915 721452da2392a3dea3b768c26c93ad61 405 SUPERFAMILY SSF53686 5 354 1.07E-91 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_05915 721452da2392a3dea3b768c26c93ad61 405 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 21 399 2.1E-132 T 11-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_23460 23f6e7957ea3d31a2395d60785177f71 506 SMART SM00155 397 424 4.5E-6 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_23460 23f6e7957ea3d31a2395d60785177f71 506 SMART SM00155 157 184 0.041 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APT56_23460 23f6e7957ea3d31a2395d60785177f71 506 SUPERFAMILY SSF56024 272 461 6.06E-34 T 11-10-2018 APT56_23460 23f6e7957ea3d31a2395d60785177f71 506 SUPERFAMILY SSF56024 35 233 3.77E-44 T 11-10-2018 APT56_23460 23f6e7957ea3d31a2395d60785177f71 506 Gene3D G3DSA:3.30.870.10 285 464 8.3E-40 T 11-10-2018 APT56_23460 23f6e7957ea3d31a2395d60785177f71 506 Pfam PF13091 PLD-like domain 312 451 2.3E-23 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_23460 23f6e7957ea3d31a2395d60785177f71 506 Pfam PF13091 PLD-like domain 71 216 4.2E-15 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APT56_23460 23f6e7957ea3d31a2395d60785177f71 506 Gene3D G3DSA:3.30.870.10 44 237 8.9E-40 T 11-10-2018 APT56_06920 26c09e3b2fbfe690234e8dac3bf01807 497 SUPERFAMILY SSF53720 4 483 6.28E-144 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_06920 26c09e3b2fbfe690234e8dac3bf01807 497 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 8 483 1.6E-211 T 11-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 APT56_06920 26c09e3b2fbfe690234e8dac3bf01807 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_06920 26c09e3b2fbfe690234e8dac3bf01807 497 Gene3D G3DSA:3.40.605.10 26 460 8.3E-145 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_06920 26c09e3b2fbfe690234e8dac3bf01807 497 Pfam PF00171 Aldehyde dehydrogenase family 18 479 1.7E-136 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_06920 26c09e3b2fbfe690234e8dac3bf01807 497 Gene3D G3DSA:3.40.309.10 252 452 8.3E-145 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_03150 67b264236ca8f90a24b200bd06a45c8f 260 SUPERFAMILY SSF53613 1 256 1.5E-33 T 11-10-2018 IPR029056 Ribokinase-like APT56_03150 67b264236ca8f90a24b200bd06a45c8f 260 Pfam PF08543 Phosphomethylpyrimidine kinase 7 250 1.6E-34 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 APT56_03150 67b264236ca8f90a24b200bd06a45c8f 260 Gene3D G3DSA:3.40.1190.20 1 258 8.1E-37 T 11-10-2018 IPR029056 Ribokinase-like APT56_21285 dee96156affb0befdfaab5d7505fd1dc 264 SMART SM00382 31 226 3.5E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21285 dee96156affb0befdfaab5d7505fd1dc 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21285 dee96156affb0befdfaab5d7505fd1dc 264 SUPERFAMILY SSF52540 2 235 4.05E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21285 dee96156affb0befdfaab5d7505fd1dc 264 Pfam PF00005 ABC transporter 22 177 6.9E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21285 dee96156affb0befdfaab5d7505fd1dc 264 Gene3D G3DSA:3.40.50.300 1 254 1.4E-57 T 11-10-2018 APT56_06870 945c4f312450fc6e9be9f2fb6032f332 320 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 316 5.1E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_06870 945c4f312450fc6e9be9f2fb6032f332 320 PIRSF PIRSF017082 1 320 4.4E-76 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_06870 945c4f312450fc6e9be9f2fb6032f332 320 Gene3D G3DSA:3.40.190.150 24 310 2.3E-97 T 11-10-2018 APT56_06870 945c4f312450fc6e9be9f2fb6032f332 320 Gene3D G3DSA:3.40.190.10 122 245 2.3E-97 T 11-10-2018 APT56_06870 945c4f312450fc6e9be9f2fb6032f332 320 SUPERFAMILY SSF53850 109 274 2.25E-11 T 11-10-2018 APT56_05205 debde554e784754c9764fb51af63f697 85 Pfam PF03776 Septum formation topological specificity factor MinE 14 81 7.1E-27 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 APT56_05205 debde554e784754c9764fb51af63f697 85 SUPERFAMILY SSF55229 33 83 1.57E-15 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 APT56_05205 debde554e784754c9764fb51af63f697 85 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 81 6.2E-31 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 APT56_05205 debde554e784754c9764fb51af63f697 85 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 83 19.108 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 APT56_05205 debde554e784754c9764fb51af63f697 85 Gene3D G3DSA:3.30.1070.10 1 82 7.6E-29 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 APT56_04220 e030a8a26548c35be8ad0615fb21320e 111 Gene3D G3DSA:1.10.760.10 27 107 5.8E-27 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_04220 e030a8a26548c35be8ad0615fb21320e 111 SUPERFAMILY SSF46626 9 108 1.26E-15 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_04220 e030a8a26548c35be8ad0615fb21320e 111 PRINTS PR00606 Class ID cytochrome C signature 95 105 7.5E-14 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 APT56_04220 e030a8a26548c35be8ad0615fb21320e 111 PRINTS PR00606 Class ID cytochrome C signature 68 81 7.5E-14 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 APT56_04220 e030a8a26548c35be8ad0615fb21320e 111 PRINTS PR00606 Class ID cytochrome C signature 83 93 7.5E-14 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 APT56_04220 e030a8a26548c35be8ad0615fb21320e 111 PRINTS PR00606 Class ID cytochrome C signature 29 42 7.5E-14 T 11-10-2018 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 APT56_04220 e030a8a26548c35be8ad0615fb21320e 111 Pfam PF00034 Cytochrome c 26 106 8.3E-7 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_13830 9bd68293b13bfbac4c2f82aff0f328fe 410 Pfam PF02308 MgtC family 10 126 3.4E-11 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_13830 9bd68293b13bfbac4c2f82aff0f328fe 410 Pfam PF13194 Domain of unknown function (DUF4010) 175 384 6.7E-47 T 11-10-2018 IPR025105 Domain of unknown function DUF4010 APT56_09910 6b6f311f3d08f659ecced63edad6a254 279 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 2 50 4.0E-7 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_09910 6b6f311f3d08f659ecced63edad6a254 279 SUPERFAMILY SSF161098 70 256 1.7E-28 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09910 6b6f311f3d08f659ecced63edad6a254 279 Gene3D G3DSA:1.10.3720.10 66 277 7.5E-20 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09910 6b6f311f3d08f659ecced63edad6a254 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 276 6.7E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_17790 38af69abc757634ff90c7c5934f8e81f 383 Pfam PF01168 Alanine racemase, N-terminal domain 20 245 1.2E-32 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_17790 38af69abc757634ff90c7c5934f8e81f 383 SUPERFAMILY SSF51419 20 243 5.38E-35 T 11-10-2018 IPR029066 PLP-binding barrel APT56_17790 38af69abc757634ff90c7c5934f8e81f 383 Pfam PF14031 Putative serine dehydratase domain 260 366 9.8E-20 T 11-10-2018 IPR026956 D-serine dehydratase-like domain APT56_17790 38af69abc757634ff90c7c5934f8e81f 383 SMART SM01119 260 367 9.1E-41 T 11-10-2018 IPR026956 D-serine dehydratase-like domain APT56_17790 38af69abc757634ff90c7c5934f8e81f 383 Gene3D G3DSA:2.40.37.20 12 369 4.1E-122 T 11-10-2018 APT56_17790 38af69abc757634ff90c7c5934f8e81f 383 Gene3D G3DSA:3.20.20.10 21 242 4.1E-122 T 11-10-2018 IPR029066 PLP-binding barrel APT56_01060 6cf3ade5176e182b2a63af4573e2aa73 295 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 243 285 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_01060 6cf3ade5176e182b2a63af4573e2aa73 295 Gene3D G3DSA:1.10.10.60 187 295 2.6E-29 T 11-10-2018 APT56_01060 6cf3ade5176e182b2a63af4573e2aa73 295 SUPERFAMILY SSF46689 193 240 1.61E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_01060 6cf3ade5176e182b2a63af4573e2aa73 295 Pfam PF12833 Helix-turn-helix domain 212 290 5.1E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_01060 6cf3ade5176e182b2a63af4573e2aa73 295 SUPERFAMILY SSF46689 242 293 7.17E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_01060 6cf3ade5176e182b2a63af4573e2aa73 295 SMART SM00342 206 289 6.7E-28 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_11220 cb898cb94e6960d2a184b5ca8f156444 199 Pfam PF01323 DSBA-like thioredoxin domain 3 196 3.8E-35 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 APT56_11220 cb898cb94e6960d2a184b5ca8f156444 199 Gene3D G3DSA:3.40.30.10 3 199 7.6E-55 T 11-10-2018 APT56_11220 cb898cb94e6960d2a184b5ca8f156444 199 PIRSF PIRSF006386 1 199 6.7E-53 T 11-10-2018 IPR014440 HCCA isomerase/glutathione S-transferase kappa Reactome: R-HSA-156590|Reactome: R-HSA-9033241 APT56_11220 cb898cb94e6960d2a184b5ca8f156444 199 SUPERFAMILY SSF52833 3 197 1.71E-37 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_19860 2bade000f4eb5fb7a2c83106c227bfae 303 Gene3D G3DSA:3.20.20.410 2 301 8.5E-71 T 11-10-2018 IPR036520 UPF0759 superfamily APT56_19860 2bade000f4eb5fb7a2c83106c227bfae 303 Pfam PF01904 Protein of unknown function DUF72 22 293 9.4E-57 T 11-10-2018 IPR002763 Protein of unknown function DUF72 APT56_19860 2bade000f4eb5fb7a2c83106c227bfae 303 SUPERFAMILY SSF117396 1 296 4.71E-69 T 11-10-2018 IPR036520 UPF0759 superfamily APT56_01855 0f4d03c3291f58e2a920b129f1b41c2a 321 Pfam PF09084 NMT1/THI5 like 62 256 3.9E-17 T 11-10-2018 IPR015168 SsuA/THI5-like APT56_01855 0f4d03c3291f58e2a920b129f1b41c2a 321 Gene3D G3DSA:3.40.190.10 37 309 1.5E-109 T 11-10-2018 APT56_01855 0f4d03c3291f58e2a920b129f1b41c2a 321 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 37 314 3.4E-73 T 11-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 APT56_01855 0f4d03c3291f58e2a920b129f1b41c2a 321 Gene3D G3DSA:1.10.8.450 247 279 1.5E-109 T 11-10-2018 APT56_01855 0f4d03c3291f58e2a920b129f1b41c2a 321 Gene3D G3DSA:3.40.190.10 116 215 1.5E-109 T 11-10-2018 APT56_01855 0f4d03c3291f58e2a920b129f1b41c2a 321 SUPERFAMILY SSF53850 35 273 2.79E-55 T 11-10-2018 APT56_01855 0f4d03c3291f58e2a920b129f1b41c2a 321 SMART SM00062 36 267 3.1E-30 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_19750 1a14172fa929c75f959559295f2df45a 281 SUPERFAMILY SSF48452 63 213 9.8E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_19750 1a14172fa929c75f959559295f2df45a 281 PIRSF PIRSF029658 1 268 8.4E-76 T 11-10-2018 IPR016931 Uncharacterised conserved protein UCP029658, TPR APT56_19750 1a14172fa929c75f959559295f2df45a 281 Pfam PF13432 Tetratricopeptide repeat 125 186 1.4E-7 T 11-10-2018 APT56_19750 1a14172fa929c75f959559295f2df45a 281 SMART SM00028 119 152 0.0031 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_19750 1a14172fa929c75f959559295f2df45a 281 SMART SM00028 153 186 67.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_19750 1a14172fa929c75f959559295f2df45a 281 Gene3D G3DSA:1.25.40.10 10 227 3.2E-21 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 Gene3D G3DSA:3.30.70.2740 345 433 7.8E-21 T 11-10-2018 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 Pfam PF01565 FAD binding domain 43 181 1.6E-37 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 Gene3D G3DSA:1.10.45.10 434 474 5.3E-11 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 SUPERFAMILY SSF55103 195 474 1.37E-50 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 Pfam PF02913 FAD linked oxidases, C-terminal domain 221 472 3.6E-46 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 Gene3D G3DSA:3.30.43.10 1 97 4.4E-25 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 Gene3D G3DSA:3.30.465.10 99 219 1.3E-45 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 SUPERFAMILY SSF56176 6 221 3.82E-73 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_25715 010740dd93ff77ff2d495cf25f6e794b 475 Gene3D G3DSA:3.30.70.2190 221 344 1.0E-34 T 11-10-2018 APT56_21095 e20691392ef13d68eac21398c2fb6c81 221 SUPERFAMILY SSF53474 8 216 6.55E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_21095 e20691392ef13d68eac21398c2fb6c81 221 Gene3D G3DSA:3.40.50.1820 4 215 4.7E-22 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Hamap MF_00974 DNA primase [dnaG]. 1 676 27.21 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 SMART SM00493 256 327 1.7E-18 T 11-10-2018 IPR006171 TOPRIM domain APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 SMART SM00400 33 87 4.2E-34 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 SUPERFAMILY SSF56731 119 419 1.88E-100 T 11-10-2018 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Gene3D G3DSA:3.90.580.10 1 99 9.8E-39 T 11-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Pfam PF08275 DNA primase catalytic core, N-terminal domain 129 248 5.2E-36 T 11-10-2018 IPR013264 DNA primase, catalytic core, N-terminal APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Pfam PF08278 DNA primase DnaG DnaB-binding 553 674 1.0E-13 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Gene3D G3DSA:3.40.1360.10 238 364 1.1E-41 T 11-10-2018 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 SUPERFAMILY SSF57783 2 97 4.42E-36 T 11-10-2018 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 SUPERFAMILY SSF117023 549 677 3.01E-13 T 11-10-2018 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Pfam PF10410 DnaB-helicase binding domain of primase 366 421 2.2E-9 T 11-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Pfam PF13662 Toprim domain 257 322 6.7E-16 T 11-10-2018 IPR006171 TOPRIM domain APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Pfam PF01807 CHC2 zinc finger 3 97 3.6E-37 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 TIGRFAM TIGR01391 dnaG: DNA primase 2 414 2.0E-137 T 11-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 SMART SM00766 551 675 8.5E-21 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 APT56_09585 f8980e9db486159c577d26d4e9b4ecaa 687 Gene3D G3DSA:3.90.980.10 110 237 6.9E-37 T 11-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily APT56_00645 77335632cd4570f37eee48986c2caf17 885 Pfam PF14345 GDYXXLXY protein 728 877 7.1E-38 T 11-10-2018 IPR025833 GDYXXLXY protein APT56_00645 77335632cd4570f37eee48986c2caf17 885 Pfam PF09925 Predicted membrane protein (DUF2157) 17 137 3.3E-24 T 11-10-2018 IPR018677 Domain of unknown function DUF2157 APT56_00645 77335632cd4570f37eee48986c2caf17 885 Pfam PF14351 Domain of unknown function (DUF4401) 360 689 1.7E-64 T 11-10-2018 IPR025513 Domain of unknown function DUF4401 APT56_05880 9b043e3532fefb2b47bfabbbda5da413 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 4.0E-35 T 11-10-2018 APT56_05880 9b043e3532fefb2b47bfabbbda5da413 163 SUPERFAMILY SSF55021 79 162 2.44E-25 T 11-10-2018 APT56_05880 9b043e3532fefb2b47bfabbbda5da413 163 Pfam PF13710 ACT domain 12 73 9.0E-16 T 11-10-2018 APT56_05880 9b043e3532fefb2b47bfabbbda5da413 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 9.1E-27 T 11-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APT56_05880 9b043e3532fefb2b47bfabbbda5da413 163 SUPERFAMILY SSF55021 1 76 6.87E-23 T 11-10-2018 APT56_05880 9b043e3532fefb2b47bfabbbda5da413 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 157 2.7E-64 T 11-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APT56_05880 9b043e3532fefb2b47bfabbbda5da413 163 Gene3D G3DSA:3.30.70.260 1 78 1.8E-36 T 11-10-2018 APT56_05880 9b043e3532fefb2b47bfabbbda5da413 163 Gene3D G3DSA:3.30.70.1150 83 163 5.1E-30 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal APT56_02660 56c25f6bcf2b4cb166af16ecdb6e2a9b 162 SUPERFAMILY SSF52374 28 159 8.44E-22 T 11-10-2018 APT56_02660 56c25f6bcf2b4cb166af16ecdb6e2a9b 162 Gene3D G3DSA:3.40.50.620 10 161 4.9E-31 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_02660 56c25f6bcf2b4cb166af16ecdb6e2a9b 162 Pfam PF01467 Cytidylyltransferase-like 32 124 2.5E-13 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT56_02660 56c25f6bcf2b4cb166af16ecdb6e2a9b 162 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 30 91 5.3E-13 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APT56_22435 e79251fe59b13dc79317c3b1d1c10c03 192 Gene3D G3DSA:3.40.50.300 15 163 6.7E-14 T 11-10-2018 APT56_22435 e79251fe59b13dc79317c3b1d1c10c03 192 SUPERFAMILY SSF52540 11 188 5.33E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22435 e79251fe59b13dc79317c3b1d1c10c03 192 Pfam PF13238 AAA domain 14 146 6.0E-8 T 11-10-2018 APT56_22435 e79251fe59b13dc79317c3b1d1c10c03 192 Gene3D G3DSA:3.30.63.10 44 98 6.7E-14 T 11-10-2018 APT56_22435 e79251fe59b13dc79317c3b1d1c10c03 192 SMART SM00072 9 190 7.9E-5 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APT56_22435 e79251fe59b13dc79317c3b1d1c10c03 192 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 11 185 6.1E-60 T 11-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_22435 e79251fe59b13dc79317c3b1d1c10c03 192 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 9 187 34.004 T 11-10-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_22605 6c3f977f8b66698165910a962ed5b382 678 SUPERFAMILY SSF52922 551 678 1.96E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_22605 6c3f977f8b66698165910a962ed5b382 678 SUPERFAMILY SSF52518 10 323 5.21E-118 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_22605 6c3f977f8b66698165910a962ed5b382 678 Gene3D G3DSA:3.40.50.970 331 554 1.5E-81 T 11-10-2018 APT56_22605 6c3f977f8b66698165910a962ed5b382 678 SUPERFAMILY SSF52518 352 544 5.89E-63 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_22605 6c3f977f8b66698165910a962ed5b382 678 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 11 338 1.5E-160 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_22605 6c3f977f8b66698165910a962ed5b382 678 Gene3D G3DSA:3.40.50.920 556 678 2.3E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_22605 6c3f977f8b66698165910a962ed5b382 678 Pfam PF02780 Transketolase, C-terminal domain 557 670 2.6E-18 T 11-10-2018 IPR033248 Transketolase, C-terminal domain APT56_22605 6c3f977f8b66698165910a962ed5b382 678 SMART SM00861 359 542 3.1E-67 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_22605 6c3f977f8b66698165910a962ed5b382 678 ProSitePatterns PS00801 Transketolase signature 1. 16 36 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_22605 6c3f977f8b66698165910a962ed5b382 678 Gene3D G3DSA:3.40.50.970 9 330 1.1E-132 T 11-10-2018 APT56_22605 6c3f977f8b66698165910a962ed5b382 678 TIGRFAM TIGR00232 tktlase_bact: transketolase 12 677 1.3E-284 T 11-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 APT56_22605 6c3f977f8b66698165910a962ed5b382 678 Pfam PF02779 Transketolase, pyrimidine binding domain 358 541 6.2E-45 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 Gene3D G3DSA:1.20.120.30 81 184 3.7E-6 T 11-10-2018 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 Gene3D G3DSA:1.10.287.950 231 533 5.7E-96 T 11-10-2018 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 Pfam PF02203 Tar ligand binding domain homologue 4 178 9.5E-21 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 SUPERFAMILY SSF47170 32 179 1.7E-16 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 SMART SM00304 231 283 4.0E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 SUPERFAMILY SSF58104 251 536 4.32E-78 T 11-10-2018 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 343 499 3.5E-56 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 Pfam PF00672 HAMP domain 231 279 1.3E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 459 488 1.1E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 8 33 1.1E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 305 334 1.1E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 411 440 1.1E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 382 409 1.1E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_11920 4299ec01a63db5a7d8647a8f439617b8 568 SMART SM00283 284 531 2.1E-97 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_27390 055c80cbc8040d7f13f0a68bc6cdb5da 326 Gene3D G3DSA:3.90.550.10 1 244 5.0E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_27390 055c80cbc8040d7f13f0a68bc6cdb5da 326 Pfam PF00535 Glycosyl transferase family 2 7 169 8.5E-21 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_27390 055c80cbc8040d7f13f0a68bc6cdb5da 326 SUPERFAMILY SSF53448 4 238 6.95E-31 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_26125 dc562e4e469beb0c28aa1445b1f97a55 265 Gene3D G3DSA:3.40.190.10 29 260 1.2E-91 T 11-10-2018 APT56_26125 dc562e4e469beb0c28aa1445b1f97a55 265 Pfam PF03180 NLPA lipoprotein 29 264 4.0E-87 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_26125 dc562e4e469beb0c28aa1445b1f97a55 265 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 25 263 2.2E-75 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_26125 dc562e4e469beb0c28aa1445b1f97a55 265 SUPERFAMILY SSF53850 28 265 3.84E-80 T 11-10-2018 APT56_26125 dc562e4e469beb0c28aa1445b1f97a55 265 PIRSF PIRSF002854 2 265 2.1E-94 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_26125 dc562e4e469beb0c28aa1445b1f97a55 265 Gene3D G3DSA:3.40.190.10 110 214 1.2E-91 T 11-10-2018 APT56_15035 96d96c7c1441a9b38c89f6697d809e56 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 417 7.9E-91 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_15035 96d96c7c1441a9b38c89f6697d809e56 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 423 5.1E-95 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_15035 96d96c7c1441a9b38c89f6697d809e56 427 PIRSF PIRSF006066 1 427 1.5E-93 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_06465 0ee159b2408aab165392a90cc81faaf2 749 Gene3D G3DSA:2.40.170.20 193 749 3.1E-118 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_06465 0ee159b2408aab165392a90cc81faaf2 749 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 82 747 4.6E-80 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_06465 0ee159b2408aab165392a90cc81faaf2 749 SUPERFAMILY SSF56935 54 749 4.58E-121 T 11-10-2018 APT56_06465 0ee159b2408aab165392a90cc81faaf2 749 Pfam PF00593 TonB dependent receptor 259 748 5.1E-51 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_06465 0ee159b2408aab165392a90cc81faaf2 749 Pfam PF07715 TonB-dependent Receptor Plug Domain 81 178 3.5E-17 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_06465 0ee159b2408aab165392a90cc81faaf2 749 Gene3D G3DSA:2.170.130.10 63 190 2.5E-39 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_23190 7d54a7e6417d7d59be2a10a6342e0b1d 316 SUPERFAMILY SSF53850 97 305 2.71E-32 T 11-10-2018 APT56_23190 7d54a7e6417d7d59be2a10a6342e0b1d 316 Gene3D G3DSA:3.40.190.10 178 277 7.8E-44 T 11-10-2018 APT56_23190 7d54a7e6417d7d59be2a10a6342e0b1d 316 SUPERFAMILY SSF46785 11 92 6.17E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23190 7d54a7e6417d7d59be2a10a6342e0b1d 316 Gene3D G3DSA:1.10.10.10 5 94 2.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23190 7d54a7e6417d7d59be2a10a6342e0b1d 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 73 1.6E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23190 7d54a7e6417d7d59be2a10a6342e0b1d 316 Pfam PF03466 LysR substrate binding domain 101 306 2.0E-23 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_23190 7d54a7e6417d7d59be2a10a6342e0b1d 316 Gene3D G3DSA:3.40.190.10 97 301 7.8E-44 T 11-10-2018 APT56_25835 a3fe6697451b2c0bc5fd90afbfe14c88 411 Gene3D G3DSA:3.40.50.2300 23 364 3.4E-140 T 11-10-2018 APT56_25835 a3fe6697451b2c0bc5fd90afbfe14c88 411 SUPERFAMILY SSF53822 23 378 3.22E-66 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_25835 a3fe6697451b2c0bc5fd90afbfe14c88 411 Pfam PF13458 Periplasmic binding protein 23 372 7.2E-69 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_25835 a3fe6697451b2c0bc5fd90afbfe14c88 411 Gene3D G3DSA:3.40.50.2300 150 405 3.4E-140 T 11-10-2018 APT56_02510 8231c0f14cb185d536534080c9ef129e 251 Pfam PF07702 UTRA domain 103 240 4.1E-32 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_02510 8231c0f14cb185d536534080c9ef129e 251 Gene3D G3DSA:1.10.10.10 12 79 4.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02510 8231c0f14cb185d536534080c9ef129e 251 SUPERFAMILY SSF64288 67 242 2.2E-35 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_02510 8231c0f14cb185d536534080c9ef129e 251 SUPERFAMILY SSF46785 13 88 4.92E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02510 8231c0f14cb185d536534080c9ef129e 251 SMART SM00345 19 78 3.8E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02510 8231c0f14cb185d536534080c9ef129e 251 Gene3D G3DSA:3.40.1410.10 85 242 2.1E-42 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_02510 8231c0f14cb185d536534080c9ef129e 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 78 2.8E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_02510 8231c0f14cb185d536534080c9ef129e 251 SMART SM00866 98 240 5.9E-32 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 APT56_02915 96086d9990c1818526cb77bd1137f50e 250 Gene3D G3DSA:1.10.3900.10 10 176 1.1E-80 T 11-10-2018 APT56_02915 96086d9990c1818526cb77bd1137f50e 250 Hamap MF_01092 Cell division protein ZapD [zapD]. 1 248 31.86 T 11-10-2018 IPR009777 Cell division protein ZapD APT56_02915 96086d9990c1818526cb77bd1137f50e 250 SUPERFAMILY SSF160950 2 248 7.59E-84 T 11-10-2018 IPR036268 ZapD domain superfamily APT56_02915 96086d9990c1818526cb77bd1137f50e 250 Gene3D G3DSA:2.60.440.10 3 248 1.1E-80 T 11-10-2018 IPR027462 Z ring-associated protein D, C-terminal APT56_02915 96086d9990c1818526cb77bd1137f50e 250 Pfam PF07072 Cell division protein 16 224 9.0E-75 T 11-10-2018 IPR009777 Cell division protein ZapD APT56_06135 1e480d13296276ead17674fffe53e381 339 Pfam PF04773 FecR protein 123 213 6.3E-16 T 11-10-2018 IPR006860 FecR protein APT56_06135 1e480d13296276ead17674fffe53e381 339 PIRSF PIRSF018266 2 332 3.4E-68 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_06135 1e480d13296276ead17674fffe53e381 339 Gene3D G3DSA:2.60.120.1440 113 252 1.5E-17 T 11-10-2018 APT56_06135 1e480d13296276ead17674fffe53e381 339 Pfam PF16220 Domain of unknown function (DUF4880) 12 55 1.6E-7 T 11-10-2018 IPR032623 FecR, N-terminal APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 SUPERFAMILY SSF46934 3 56 7.96E-14 T 11-10-2018 IPR009060 UBA-like superfamily GO:0005515 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 Gene3D G3DSA:3.30.479.20 57 148 5.9E-28 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 Pfam PF00889 Elongation factor TS 73 271 4.0E-70 T 11-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 Gene3D G3DSA:1.10.286.20 190 236 7.1E-39 T 11-10-2018 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 Gene3D G3DSA:3.30.479.20 155 270 7.1E-39 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 287 2.9E-92 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 SUPERFAMILY SSF54713 151 288 6.93E-47 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 Gene3D G3DSA:1.10.8.10 1 56 2.4E-21 T 11-10-2018 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 Hamap MF_00050 Elongation factor Ts [tsf]. 1 288 78.856 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APT56_12245 a1e5c0ac865253da3b25024c8100485a 292 SUPERFAMILY SSF54713 56 147 7.03E-23 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 APT56_13035 c425d1b6c270c1fc274263fee01426bc 576 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 124 134 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_13035 c425d1b6c270c1fc274263fee01426bc 576 Pfam PF00920 Dehydratase family 41 557 4.2E-179 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_13035 c425d1b6c270c1fc274263fee01426bc 576 Gene3D G3DSA:3.50.30.80 377 531 6.5E-48 T 11-10-2018 APT56_13035 c425d1b6c270c1fc274263fee01426bc 576 SUPERFAMILY SSF52016 378 563 7.85E-58 T 11-10-2018 APT56_13035 c425d1b6c270c1fc274263fee01426bc 576 SUPERFAMILY SSF143975 4 376 5.89E-125 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_05680 6cc00fe424addd795ea503b357b832ca 253 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 1 253 1.2E-68 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 APT56_05680 6cc00fe424addd795ea503b357b832ca 253 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 28 253 1.5E-73 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 APT56_11995 a3020c0905482862e8d3d57e9c9e1efb 489 Gene3D G3DSA:2.60.98.20 230 371 4.2E-22 T 11-10-2018 IPR037058 Flagellar hook protein FlgE superfamily APT56_11995 a3020c0905482862e8d3d57e9c9e1efb 489 Pfam PF07559 Flagellar basal body protein FlaE 249 370 4.0E-18 T 11-10-2018 IPR011491 Flagellar hook protein FlgE APT56_11995 a3020c0905482862e8d3d57e9c9e1efb 489 Pfam PF00460 Flagella basal body rod protein 6 33 2.5E-10 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 APT56_11995 a3020c0905482862e8d3d57e9c9e1efb 489 SUPERFAMILY SSF117143 73 450 5.23E-64 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like APT56_11995 a3020c0905482862e8d3d57e9c9e1efb 489 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 410 488 1.3E-19 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain APT56_11995 a3020c0905482862e8d3d57e9c9e1efb 489 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 471 4.2E-83 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G APT56_23050 ff717c7f676674bc9fe228fcfeb2287f 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 153 1.1E-25 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_23050 ff717c7f676674bc9fe228fcfeb2287f 170 Pfam PF04542 Sigma-70 region 2 12 75 1.1E-15 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_23050 ff717c7f676674bc9fe228fcfeb2287f 170 Gene3D G3DSA:1.10.10.10 96 160 2.4E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23050 ff717c7f676674bc9fe228fcfeb2287f 170 Pfam PF08281 Sigma-70, region 4 102 153 4.9E-19 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_23050 ff717c7f676674bc9fe228fcfeb2287f 170 SUPERFAMILY SSF88659 96 157 8.94E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_23050 ff717c7f676674bc9fe228fcfeb2287f 170 SUPERFAMILY SSF88946 7 80 2.59E-17 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_23050 ff717c7f676674bc9fe228fcfeb2287f 170 Gene3D G3DSA:1.10.1740.10 2 67 2.2E-23 T 11-10-2018 APT56_04310 1822bcbc0398a4d65a8976dd07d4dcc7 96 Hamap MF_00910 Cell division protein FtsL [ftsL]. 1 84 14.877 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 APT56_04310 1822bcbc0398a4d65a8976dd07d4dcc7 96 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 1 83 1.2E-24 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 APT56_04310 1822bcbc0398a4d65a8976dd07d4dcc7 96 Pfam PF04999 Cell division protein FtsL 2 82 3.6E-18 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 APT56_03685 370bbeccfabaa0e2e28f8d1d44df1cdd 366 SUPERFAMILY SSF140591 283 365 1.02E-15 T 11-10-2018 APT56_03685 370bbeccfabaa0e2e28f8d1d44df1cdd 366 TIGRFAM TIGR02511 type_III_tyeA: type III secretion effector delivery regulator, TyeA family 285 364 2.3E-18 T 11-10-2018 IPR013351 Type III secretion system effector delivery regulator TyeA-related APT56_03685 370bbeccfabaa0e2e28f8d1d44df1cdd 366 Pfam PF09059 TyeA 287 365 1.6E-21 T 11-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA APT56_03685 370bbeccfabaa0e2e28f8d1d44df1cdd 366 SUPERFAMILY SSF140591 84 259 7.85E-30 T 11-10-2018 APT56_03685 370bbeccfabaa0e2e28f8d1d44df1cdd 366 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 45 271 3.0E-39 T 11-10-2018 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 APT56_03685 370bbeccfabaa0e2e28f8d1d44df1cdd 366 Gene3D G3DSA:1.20.1280.80 282 366 3.3E-18 T 11-10-2018 IPR038347 TyeA superfamily APT56_03685 370bbeccfabaa0e2e28f8d1d44df1cdd 366 Pfam PF07201 HrpJ-like domain 86 216 2.3E-14 T 11-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 APT56_13530 96dd5c48bf42b7d6417c7e26d0d23102 223 SUPERFAMILY SSF48657 36 160 5.75E-32 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily APT56_13530 96dd5c48bf42b7d6417c7e26d0d23102 223 SMART SM00945 56 170 1.1E-32 T 11-10-2018 IPR016103 ProQ/FinO domain APT56_13530 96dd5c48bf42b7d6417c7e26d0d23102 223 Gene3D G3DSA:1.10.1710.10 5 163 1.7E-19 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily APT56_13530 96dd5c48bf42b7d6417c7e26d0d23102 223 Pfam PF04352 ProQ/FINO family 60 161 1.5E-31 T 11-10-2018 IPR016103 ProQ/FinO domain APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 PIRSF PIRSF016578 242 385 7.5E-10 T 11-10-2018 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 PIRSF PIRSF016578 24 108 0.095 T 11-10-2018 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 PIRSF PIRSF016578 138 192 73.0 T 11-10-2018 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 365 7.0E-39 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 SUPERFAMILY SSF56645 1 246 1.57E-65 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 SUPERFAMILY SSF47203 231 386 4.03E-48 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 Gene3D G3DSA:1.20.140.10 239 386 1.8E-42 T 11-10-2018 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 219 3.8E-21 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 1.4E-25 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 Gene3D G3DSA:2.40.110.10 122 238 5.7E-33 T 11-10-2018 APT56_12170 04fae2cd790c8d9a4bd987caba8fb48c 388 Gene3D G3DSA:1.10.540.10 1 120 1.0E-32 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_27765 6b32a68acfa9fd58a32227e3672583ce 298 Gene3D G3DSA:3.40.50.1820 3 287 3.0E-71 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_27765 6b32a68acfa9fd58a32227e3672583ce 298 Pfam PF00561 alpha/beta hydrolase fold 36 271 1.2E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_27765 6b32a68acfa9fd58a32227e3672583ce 298 SUPERFAMILY SSF53474 12 278 3.52E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_17915 cf6bfa9f8f525425d5e8b02c91a652cc 379 Pfam PF01546 Peptidase family M20/M25/M40 65 374 2.6E-46 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_17915 cf6bfa9f8f525425d5e8b02c91a652cc 379 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 7 375 5.0E-161 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 APT56_17915 cf6bfa9f8f525425d5e8b02c91a652cc 379 SUPERFAMILY SSF55031 181 290 1.64E-30 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_17915 cf6bfa9f8f525425d5e8b02c91a652cc 379 Pfam PF07687 Peptidase dimerisation domain 177 284 8.4E-26 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_17915 cf6bfa9f8f525425d5e8b02c91a652cc 379 SUPERFAMILY SSF53187 7 376 6.81E-69 T 11-10-2018 APT56_17915 cf6bfa9f8f525425d5e8b02c91a652cc 379 Gene3D G3DSA:3.30.70.360 181 294 3.9E-131 T 11-10-2018 APT56_17915 cf6bfa9f8f525425d5e8b02c91a652cc 379 Gene3D G3DSA:3.40.630.10 9 363 3.9E-131 T 11-10-2018 APT56_17915 cf6bfa9f8f525425d5e8b02c91a652cc 379 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 377 52.097 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 APT56_09190 5eed415f9e7e3307e8728c577d544132 204 Pfam PF02545 Maf-like protein 9 198 8.9E-52 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APT56_09190 5eed415f9e7e3307e8728c577d544132 204 Gene3D G3DSA:3.90.950.10 5 203 1.1E-66 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APT56_09190 5eed415f9e7e3307e8728c577d544132 204 TIGRFAM TIGR00172 maf: septum formation protein Maf 7 197 2.2E-45 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APT56_09190 5eed415f9e7e3307e8728c577d544132 204 Hamap MF_00528 Septum formation protein Maf [maf]. 9 203 30.034 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APT56_09190 5eed415f9e7e3307e8728c577d544132 204 SUPERFAMILY SSF52972 8 197 3.6E-57 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APT56_09190 5eed415f9e7e3307e8728c577d544132 204 PIRSF PIRSF006305 1 203 1.0E-47 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APT56_01685 c1079f5d52ea64669321040998ba3bd4 405 SUPERFAMILY SSF51556 60 359 1.56E-88 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_01685 c1079f5d52ea64669321040998ba3bd4 405 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 399 42.445 T 11-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01685 c1079f5d52ea64669321040998ba3bd4 405 TIGRFAM TIGR01224 hutI: imidazolonepropionase 22 397 2.7E-147 T 11-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 APT56_01685 c1079f5d52ea64669321040998ba3bd4 405 SUPERFAMILY SSF51338 1 399 1.39E-29 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_01685 c1079f5d52ea64669321040998ba3bd4 405 Gene3D G3DSA:3.20.20.140 61 359 1.3E-160 T 11-10-2018 APT56_01685 c1079f5d52ea64669321040998ba3bd4 405 Gene3D G3DSA:2.30.40.10 8 395 1.3E-160 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_01685 c1079f5d52ea64669321040998ba3bd4 405 Pfam PF01979 Amidohydrolase family 57 399 2.5E-24 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_07615 8297eb61337a480fd601b09b04e8d965 258 Gene3D G3DSA:3.30.450.40 75 245 4.3E-30 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_07615 8297eb61337a480fd601b09b04e8d965 258 Pfam PF01614 Bacterial transcriptional regulator 128 237 2.4E-14 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_07615 8297eb61337a480fd601b09b04e8d965 258 SUPERFAMILY SSF46785 3 75 1.22E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_07615 8297eb61337a480fd601b09b04e8d965 258 SMART SM00346 3 93 1.4E-6 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_07615 8297eb61337a480fd601b09b04e8d965 258 SUPERFAMILY SSF55781 76 241 1.18E-28 T 11-10-2018 APT56_07615 8297eb61337a480fd601b09b04e8d965 258 Pfam PF09339 IclR helix-turn-helix domain 6 53 3.7E-12 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_07615 8297eb61337a480fd601b09b04e8d965 258 Gene3D G3DSA:1.10.10.10 1 74 3.3E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 ProSitePatterns PS00632 Ribosomal protein S4 signature. 95 119 - T 11-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 207 34.738 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 Gene3D G3DSA:3.10.290.10 96 192 1.1E-78 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 207 2.4E-78 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 Gene3D G3DSA:1.10.1050.10 6 207 1.1E-78 T 11-10-2018 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 SMART SM00363 97 161 3.5E-16 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 SUPERFAMILY SSF55174 3 207 1.18E-66 T 11-10-2018 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 SMART SM01390 3 96 6.2E-49 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 Pfam PF01479 S4 domain 98 144 6.1E-17 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27670 1ee80096358708fd0e4951cb4051d93f 207 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 96 6.3E-32 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 APT56_12850 d869979e482957dd031b395e2b33a5ee 330 Gene3D G3DSA:3.40.190.10 130 255 5.1E-104 T 11-10-2018 APT56_12850 d869979e482957dd031b395e2b33a5ee 330 Gene3D G3DSA:3.40.190.150 32 320 5.1E-104 T 11-10-2018 APT56_12850 d869979e482957dd031b395e2b33a5ee 330 SUPERFAMILY SSF53850 119 291 6.73E-15 T 11-10-2018 APT56_12850 d869979e482957dd031b395e2b33a5ee 330 PIRSF PIRSF017082 1 329 1.8E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_12850 d869979e482957dd031b395e2b33a5ee 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 321 3.3E-73 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18875 6eb833a1e98382dbaf7d15eaf5517c78 372 SMART SM00930 291 364 0.0046 T 11-10-2018 IPR018449 NIL domain APT56_18875 6eb833a1e98382dbaf7d15eaf5517c78 372 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_18875 6eb833a1e98382dbaf7d15eaf5517c78 372 SUPERFAMILY SSF52540 25 262 1.21E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18875 6eb833a1e98382dbaf7d15eaf5517c78 372 SMART SM00382 53 240 5.0E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18875 6eb833a1e98382dbaf7d15eaf5517c78 372 Pfam PF00005 ABC transporter 44 192 1.5E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_18875 6eb833a1e98382dbaf7d15eaf5517c78 372 SUPERFAMILY SSF55021 290 366 2.17E-5 T 11-10-2018 APT56_18875 6eb833a1e98382dbaf7d15eaf5517c78 372 Pfam PF09383 NIL domain 294 359 2.4E-6 T 11-10-2018 IPR018449 NIL domain APT56_18875 6eb833a1e98382dbaf7d15eaf5517c78 372 Gene3D G3DSA:3.40.50.300 24 280 3.8E-83 T 11-10-2018 APT56_01900 d5f0498e09898053d97c4ce513f7a5c5 314 Gene3D G3DSA:2.130.10.10 2 117 2.3E-18 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_01900 d5f0498e09898053d97c4ce513f7a5c5 314 SUPERFAMILY SSF50974 2 307 5.23E-70 T 11-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 APT56_01900 d5f0498e09898053d97c4ce513f7a5c5 314 Gene3D G3DSA:2.130.10.10 118 313 5.6E-40 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_12155 227107e15ba54dbad78559a9ec772a4a 462 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 108 1.7E-15 T 11-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 APT56_12155 227107e15ba54dbad78559a9ec772a4a 462 Pfam PF07196 Flagellin hook IN motif 135 183 1.3E-7 T 11-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 APT56_12155 227107e15ba54dbad78559a9ec772a4a 462 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 223 443 4.5E-52 T 11-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 APT56_13140 f8e796b27eb20ddf68cbae712307245a 312 Gene3D G3DSA:3.40.190.150 16 302 1.1E-95 T 11-10-2018 APT56_13140 f8e796b27eb20ddf68cbae712307245a 312 Gene3D G3DSA:3.40.190.10 113 237 1.1E-95 T 11-10-2018 APT56_13140 f8e796b27eb20ddf68cbae712307245a 312 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 35 306 2.2E-66 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13140 f8e796b27eb20ddf68cbae712307245a 312 PIRSF PIRSF017082 1 311 1.5E-72 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13140 f8e796b27eb20ddf68cbae712307245a 312 SUPERFAMILY SSF53850 108 275 1.63E-10 T 11-10-2018 APT56_13000 86319aee02aad2efb989658fa7dd2c83 370 Gene3D G3DSA:2.40.110.10 125 222 1.9E-9 T 11-10-2018 APT56_13000 86319aee02aad2efb989658fa7dd2c83 370 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 30 112 2.2E-5 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_13000 86319aee02aad2efb989658fa7dd2c83 370 SUPERFAMILY SSF56645 18 218 3.66E-27 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_13000 86319aee02aad2efb989658fa7dd2c83 370 Gene3D G3DSA:1.10.540.10 14 113 4.4E-9 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_00465 57a3be9cbb38492726cb6f7118099876 351 SUPERFAMILY SSF50331 260 343 5.53E-8 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APT56_00465 57a3be9cbb38492726cb6f7118099876 351 Pfam PF00005 ABC transporter 20 161 6.6E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_00465 57a3be9cbb38492726cb6f7118099876 351 SMART SM00382 28 211 2.6E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_00465 57a3be9cbb38492726cb6f7118099876 351 Gene3D G3DSA:3.40.50.300 2 237 1.0E-77 T 11-10-2018 APT56_00465 57a3be9cbb38492726cb6f7118099876 351 Pfam PF08402 TOBE domain 272 343 2.8E-11 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APT56_00465 57a3be9cbb38492726cb6f7118099876 351 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_00465 57a3be9cbb38492726cb6f7118099876 351 SUPERFAMILY SSF52540 4 241 9.09E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 SUPERFAMILY SSF56176 5 217 4.64E-73 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 Gene3D G3DSA:3.30.465.10 98 218 5.8E-43 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 SUPERFAMILY SSF55103 222 470 1.1E-54 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 221 469 2.4E-50 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 Gene3D G3DSA:1.10.45.10 430 470 2.6E-16 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 Gene3D G3DSA:3.30.70.2740 343 429 1.5E-27 T 11-10-2018 APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 Gene3D G3DSA:3.30.70.2190 220 342 3.5E-33 T 11-10-2018 APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 Pfam PF01565 FAD binding domain 42 179 1.2E-36 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_26360 75f03062bb28eac8e46472b30a4268f0 470 Gene3D G3DSA:3.30.43.10 1 95 1.2E-26 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 SMART SM00228 499 569 5.3E-4 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 Gene3D G3DSA:2.30.42.10 500 589 4.8E-15 T 11-10-2018 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 SUPERFAMILY SSF55486 245 462 4.17E-8 T 11-10-2018 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 PIRSF PIRSF016493 5 591 5.9E-210 T 11-10-2018 IPR024191 Peptidase M61 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 Gene3D G3DSA:1.10.390.60 187 475 7.3E-105 T 11-10-2018 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 SUPERFAMILY SSF50156 509 579 6.84E-12 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 Gene3D G3DSA:2.60.40.3650 8 185 4.7E-61 T 11-10-2018 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 Pfam PF13180 PDZ domain 503 578 1.1E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_02130 d87e4c70723e3a6acf21944d4801660b 591 Pfam PF05299 M61 glycyl aminopeptidase 289 405 3.5E-48 T 11-10-2018 IPR007963 Peptidase M61, catalytic domain APT56_17395 10817003e31b2cc31021b722db18efd8 98 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 2 81 2.0E-30 T 11-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 APT56_17395 10817003e31b2cc31021b722db18efd8 98 SUPERFAMILY SSF47413 7 88 3.58E-21 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_17395 10817003e31b2cc31021b722db18efd8 98 Gene3D G3DSA:1.10.260.40 1 81 7.9E-29 T 11-10-2018 APT56_17395 10817003e31b2cc31021b722db18efd8 98 Pfam PF01381 Helix-turn-helix 19 59 4.9E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_13965 06ea67c3ae37197f1813897fd95a4fc1 266 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 2 266 1.0E-136 T 11-10-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 APT56_13965 06ea67c3ae37197f1813897fd95a4fc1 266 SUPERFAMILY SSF56529 1 266 1.57E-76 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_13965 06ea67c3ae37197f1813897fd95a4fc1 266 Gene3D G3DSA:3.90.850.10 1 266 1.4E-80 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_13965 06ea67c3ae37197f1813897fd95a4fc1 266 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 102 265 5.8E-7 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 SUPERFAMILY SSF56645 4 238 2.23E-80 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 116 2.5E-33 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 Gene3D G3DSA:2.40.110.10 119 234 8.2E-41 T 11-10-2018 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 2.1E-24 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 SUPERFAMILY SSF47203 225 375 5.64E-38 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 Gene3D G3DSA:1.10.540.10 1 118 6.7E-36 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 374 1.6E-35 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 Gene3D G3DSA:1.20.140.10 235 376 1.6E-36 T 11-10-2018 APT56_07450 97f6ac9c40dee6fa2f08f375fd507411 376 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 SMART SM00245 183 402 1.1E-31 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 SMART SM00228 136 207 7.4E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 SUPERFAMILY SSF52096 93 403 2.32E-48 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 138 196 8.2E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 SUPERFAMILY SSF50156 115 223 1.1E-17 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 Gene3D G3DSA:3.90.226.10 224 399 1.1E-64 T 11-10-2018 APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 Gene3D G3DSA:2.30.42.10 136 223 1.1E-64 T 11-10-2018 APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 Gene3D G3DSA:3.30.750.44 102 377 1.1E-64 T 11-10-2018 APT56_24120 fdfd0ec67ce737c1474d51ce2bfa0aad 454 Pfam PF03572 Peptidase family S41 235 399 1.3E-33 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APT56_08030 cdcfcfd4cf4857ee6c8098aaba0fd516 376 Gene3D G3DSA:3.50.50.60 5 368 2.9E-32 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_08030 cdcfcfd4cf4857ee6c8098aaba0fd516 376 TIGRFAM TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364 5 368 2.0E-136 T 11-10-2018 IPR017741 FAD-dependent oxidoreductase, HpnW APT56_08030 cdcfcfd4cf4857ee6c8098aaba0fd516 376 Pfam PF01266 FAD dependent oxidoreductase 5 370 4.2E-34 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_08030 cdcfcfd4cf4857ee6c8098aaba0fd516 376 Gene3D G3DSA:3.30.9.10 83 333 2.9E-32 T 11-10-2018 APT56_08030 cdcfcfd4cf4857ee6c8098aaba0fd516 376 SUPERFAMILY SSF51905 3 375 6.47E-30 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00550 a0491a13853baaa574c503bb8e2baaf0 343 Gene3D G3DSA:3.40.50.2300 144 328 9.3E-69 T 11-10-2018 APT56_00550 a0491a13853baaa574c503bb8e2baaf0 343 Gene3D G3DSA:3.40.50.2300 56 301 9.3E-69 T 11-10-2018 APT56_00550 a0491a13853baaa574c503bb8e2baaf0 343 SUPERFAMILY SSF53822 43 240 7.65E-7 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_00550 a0491a13853baaa574c503bb8e2baaf0 343 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 56 284 1.0E-39 T 11-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 APT56_07800 b6385f2005961878897c53dceea4cf3c 468 TIGRFAM TIGR00797 matE: MATE efflux family protein 24 413 1.6E-70 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_07800 b6385f2005961878897c53dceea4cf3c 468 Pfam PF01554 MatE 24 184 5.5E-24 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_07800 b6385f2005961878897c53dceea4cf3c 468 Pfam PF01554 MatE 249 410 1.9E-18 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_07800 b6385f2005961878897c53dceea4cf3c 468 PIRSF PIRSF006603 12 467 5.2E-53 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 Gene3D G3DSA:1.10.287.130 253 358 1.9E-14 T 11-10-2018 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 SUPERFAMILY SSF158472 253 301 2.35E-5 T 11-10-2018 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 493 2.1E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 512 2.1E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 455 2.1E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 Gene3D G3DSA:3.30.565.10 370 516 7.1E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 Pfam PF00672 HAMP domain 253 300 4.3E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 406 513 8.1E-14 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 SMART SM00387 406 515 4.8E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 SUPERFAMILY SSF47384 288 359 2.55E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 SMART SM00304 253 304 2.9E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_05270 45f2bffd9ebb91fb70881d793d31e650 517 SUPERFAMILY SSF55874 394 512 8.25E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_11375 8c1b6ee4fe037a18415e2ff5baea741d 319 SUPERFAMILY SSF53850 98 301 2.35E-45 T 11-10-2018 APT56_11375 8c1b6ee4fe037a18415e2ff5baea741d 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 71 5.1E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_11375 8c1b6ee4fe037a18415e2ff5baea741d 319 Pfam PF03466 LysR substrate binding domain 96 299 1.1E-43 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_11375 8c1b6ee4fe037a18415e2ff5baea741d 319 Gene3D G3DSA:3.40.190.10 99 294 1.3E-66 T 11-10-2018 APT56_11375 8c1b6ee4fe037a18415e2ff5baea741d 319 Gene3D G3DSA:3.40.190.10 171 271 1.3E-66 T 11-10-2018 APT56_11375 8c1b6ee4fe037a18415e2ff5baea741d 319 SUPERFAMILY SSF46785 14 94 7.74E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_11375 8c1b6ee4fe037a18415e2ff5baea741d 319 Gene3D G3DSA:1.10.10.10 11 94 1.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12080 b516da9374ca224658f3913dcb10af68 185 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 99 174 3.7E-34 T 11-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 APT56_12080 b516da9374ca224658f3913dcb10af68 185 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 102 172 6.8E-26 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) APT56_12080 b516da9374ca224658f3913dcb10af68 185 PRINTS PR00956 Flagellar motor switch protein FliN signature 119 135 5.2E-30 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 APT56_12080 b516da9374ca224658f3913dcb10af68 185 PRINTS PR00956 Flagellar motor switch protein FliN signature 102 118 5.2E-30 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 APT56_12080 b516da9374ca224658f3913dcb10af68 185 PRINTS PR00956 Flagellar motor switch protein FliN signature 135 148 5.2E-30 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 APT56_12080 b516da9374ca224658f3913dcb10af68 185 PRINTS PR00956 Flagellar motor switch protein FliN signature 148 163 5.2E-30 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 APT56_12080 b516da9374ca224658f3913dcb10af68 185 Gene3D G3DSA:2.30.330.10 92 183 3.0E-35 T 11-10-2018 IPR036429 SpoA-like superfamily APT56_12080 b516da9374ca224658f3913dcb10af68 185 SUPERFAMILY SSF101801 100 181 1.83E-26 T 11-10-2018 IPR036429 SpoA-like superfamily APT56_18960 3be25443e6fb8a6a7a4f7ed0d6d5811e 170 SUPERFAMILY SSF109854 4 168 1.56E-60 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes APT56_18960 3be25443e6fb8a6a7a4f7ed0d6d5811e 170 Gene3D G3DSA:1.20.120.450 1 170 5.2E-60 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes APT56_18960 3be25443e6fb8a6a7a4f7ed0d6d5811e 170 Pfam PF09351 Domain of unknown function (DUF1993) 5 165 5.0E-63 T 11-10-2018 IPR018531 Protein of unknown function DUF1993 APT56_01180 d943ede770e761357f15799b36607845 75 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.6E-23 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 APT56_01180 d943ede770e761357f15799b36607845 75 Pfam PF02416 mttA/Hcf106 family 5 50 1.1E-13 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 APT56_01180 d943ede770e761357f15799b36607845 75 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 66 22.628 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 APT56_04160 ba43dabdb3be0583615fa7a413f3fdd5 313 Gene3D G3DSA:3.40.190.10 92 292 2.5E-66 T 11-10-2018 APT56_04160 ba43dabdb3be0583615fa7a413f3fdd5 313 Gene3D G3DSA:3.40.190.10 165 267 2.5E-66 T 11-10-2018 APT56_04160 ba43dabdb3be0583615fa7a413f3fdd5 313 SUPERFAMILY SSF53850 89 298 4.34E-46 T 11-10-2018 APT56_04160 ba43dabdb3be0583615fa7a413f3fdd5 313 SUPERFAMILY SSF46785 3 87 1.52E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04160 ba43dabdb3be0583615fa7a413f3fdd5 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.5E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04160 ba43dabdb3be0583615fa7a413f3fdd5 313 Pfam PF03466 LysR substrate binding domain 88 295 7.3E-43 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_04160 ba43dabdb3be0583615fa7a413f3fdd5 313 Gene3D G3DSA:1.10.10.10 2 91 1.0E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06750 be676b6ebcdbb0960dc4427fd56a30ef 261 SUPERFAMILY SSF55846 27 184 1.44E-47 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APT56_06750 be676b6ebcdbb0960dc4427fd56a30ef 261 SMART SM00644 28 168 6.4E-27 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APT56_06750 be676b6ebcdbb0960dc4427fd56a30ef 261 Gene3D G3DSA:3.40.80.10 38 182 5.5E-48 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APT56_06750 be676b6ebcdbb0960dc4427fd56a30ef 261 Gene3D G3DSA:1.10.101.10 183 261 1.8E-23 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 APT56_06750 be676b6ebcdbb0960dc4427fd56a30ef 261 SUPERFAMILY SSF47090 193 260 5.49E-19 T 11-10-2018 IPR036365 PGBD-like superfamily APT56_06750 be676b6ebcdbb0960dc4427fd56a30ef 261 Pfam PF01471 Putative peptidoglycan binding domain 203 257 4.8E-10 T 11-10-2018 IPR002477 Peptidoglycan binding-like APT56_06750 be676b6ebcdbb0960dc4427fd56a30ef 261 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 38 169 5.3E-28 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APT56_15360 87f036a575f07c4dc1ea84bdb536b824 148 Gene3D G3DSA:1.10.10.10 2 147 8.5E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15360 87f036a575f07c4dc1ea84bdb536b824 148 Pfam PF02082 Transcriptional regulator 1 81 2.5E-21 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type APT56_15360 87f036a575f07c4dc1ea84bdb536b824 148 SUPERFAMILY SSF46785 6 131 1.93E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08950 8e8ea55b139854ddc6c1f93e6b49405f 324 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 285 7.0E-68 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_08950 8e8ea55b139854ddc6c1f93e6b49405f 324 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 310 3.5E-85 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_08950 8e8ea55b139854ddc6c1f93e6b49405f 324 PIRSF PIRSF006470 1 324 5.3E-95 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_08950 8e8ea55b139854ddc6c1f93e6b49405f 324 SUPERFAMILY SSF53850 25 289 2.33E-6 T 11-10-2018 APT56_08950 8e8ea55b139854ddc6c1f93e6b49405f 324 Gene3D G3DSA:3.40.190.170 23 324 4.5E-108 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_05590 b8cd0325c1a63465063c309d931c9c2c 134 Gene3D G3DSA:3.40.30.10 9 123 1.9E-8 T 11-10-2018 APT56_05590 b8cd0325c1a63465063c309d931c9c2c 134 SUPERFAMILY SSF52833 9 128 1.21E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_12135 be0ad1459b1aff69844396c995b5a76b 104 Pfam PF01312 FlhB HrpN YscU SpaS Family 16 89 8.7E-17 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 APT56_12135 be0ad1459b1aff69844396c995b5a76b 104 SUPERFAMILY SSF160544 16 93 4.32E-22 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal APT56_12135 be0ad1459b1aff69844396c995b5a76b 104 Gene3D G3DSA:3.40.1690.10 15 94 2.2E-23 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal APT56_18715 e75ba11b486ee31fb4b8404bd29f811c 288 Gene3D G3DSA:1.10.3720.10 76 284 1.7E-17 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18715 e75ba11b486ee31fb4b8404bd29f811c 288 SUPERFAMILY SSF161098 84 271 4.32E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18715 e75ba11b486ee31fb4b8404bd29f811c 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 284 3.3E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13570 2271837ba3324d87ee279274395db5a0 259 SUPERFAMILY SSF161098 57 243 4.97E-33 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13570 2271837ba3324d87ee279274395db5a0 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 253 1.2E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13570 2271837ba3324d87ee279274395db5a0 259 Gene3D G3DSA:1.10.3720.10 57 253 6.5E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07360 3810dd822cb34f8cc96b0df39a424923 465 Pfam PF12801 4Fe-4S binding domain 161 184 4.4E-4 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_07360 3810dd822cb34f8cc96b0df39a424923 465 Pfam PF12801 4Fe-4S binding domain 65 100 4.2E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_07360 3810dd822cb34f8cc96b0df39a424923 465 SUPERFAMILY SSF54862 70 228 5.12E-5 T 11-10-2018 APT56_20040 066ffb8ca8d6430ad28ac6b2bff401c7 198 Gene3D G3DSA:3.50.70.10 32 180 1.4E-18 T 11-10-2018 IPR016088 Chalcone isomerase, 3-layer sandwich KEGG: 00941+5.5.1.6|MetaCyc: PWY-2002|MetaCyc: PWY-5059|MetaCyc: PWY-6325|MetaCyc: PWY-6787|MetaCyc: PWY-7397|MetaCyc: PWY-7897 APT56_20040 066ffb8ca8d6430ad28ac6b2bff401c7 198 SUPERFAMILY SSF54626 31 195 1.03E-18 T 11-10-2018 IPR036298 Chalcone isomerase superfamily GO:0016872 APT56_20040 066ffb8ca8d6430ad28ac6b2bff401c7 198 Pfam PF16036 Chalcone isomerase-like 31 196 1.8E-47 T 11-10-2018 IPR016087 Chalcone isomerase GO:0016872 APT56_25160 126b76b28048c9f67c04838008e73e58 232 SMART SM00419 161 209 7.2E-4 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_25160 126b76b28048c9f67c04838008e73e58 232 SUPERFAMILY SSF46785 160 217 2.54E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25160 126b76b28048c9f67c04838008e73e58 232 Gene3D G3DSA:2.60.120.10 1 135 1.4E-21 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_25160 126b76b28048c9f67c04838008e73e58 232 Gene3D G3DSA:1.10.10.10 140 220 1.5E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25160 126b76b28048c9f67c04838008e73e58 232 Pfam PF13545 Crp-like helix-turn-helix domain 153 215 1.0E-12 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APT56_25160 126b76b28048c9f67c04838008e73e58 232 SUPERFAMILY SSF51206 5 133 3.27E-25 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APT56_25160 126b76b28048c9f67c04838008e73e58 232 Pfam PF00027 Cyclic nucleotide-binding domain 26 112 4.8E-15 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_25160 126b76b28048c9f67c04838008e73e58 232 SMART SM00100 7 128 1.9E-6 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APT56_01865 6759692c76a35f6986450b31a57064e2 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 252 1.5E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_01865 6759692c76a35f6986450b31a57064e2 261 Gene3D G3DSA:1.10.3720.10 57 253 7.2E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01865 6759692c76a35f6986450b31a57064e2 261 SUPERFAMILY SSF161098 58 239 4.71E-34 T 11-10-2018 IPR035906 MetI-like superfamily APT56_27325 d1aab40946d3440bc6f25473e6ab37c1 437 Pfam PF00534 Glycosyl transferases group 1 312 417 1.0E-6 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_27325 d1aab40946d3440bc6f25473e6ab37c1 437 SUPERFAMILY SSF53756 74 422 4.32E-16 T 11-10-2018 APT56_27325 d1aab40946d3440bc6f25473e6ab37c1 437 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 53 228 1.0E-51 T 11-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 APT56_27325 d1aab40946d3440bc6f25473e6ab37c1 437 Gene3D G3DSA:3.40.50.11720 48 227 5.9E-41 T 11-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 APT56_27325 d1aab40946d3440bc6f25473e6ab37c1 437 Gene3D G3DSA:3.40.50.2000 233 419 6.3E-61 T 11-10-2018 APT56_22875 270a1bb249042195cae5795c4fb925c0 160 Pfam PF02391 MoaE protein 5 119 1.4E-31 T 11-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 APT56_22875 270a1bb249042195cae5795c4fb925c0 160 SUPERFAMILY SSF54690 3 149 6.28E-45 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 APT56_22875 270a1bb249042195cae5795c4fb925c0 160 Gene3D G3DSA:3.90.1170.40 1 149 1.7E-43 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 APT56_13520 734fbd46cfc82263685d2c830391a905 524 TIGRFAM TIGR03248 galactar-dH20: galactarate dehydratase 11 524 3.4E-275 T 11-10-2018 IPR017654 Galactarate dehydratase GarD-like GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497 APT56_13520 734fbd46cfc82263685d2c830391a905 524 Gene3D G3DSA:3.90.1210.30 10 87 5.3E-25 T 11-10-2018 APT56_13520 734fbd46cfc82263685d2c830391a905 524 Pfam PF08666 SAF domain 18 84 5.2E-9 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_13520 734fbd46cfc82263685d2c830391a905 524 SMART SM00858 18 88 7.4E-9 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_13520 734fbd46cfc82263685d2c830391a905 524 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 115 522 4.4E-146 T 11-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 APT56_04945 871ab7a547369c94f86c290dc897bcc4 217 Pfam PF04752 ChaC-like protein 41 206 4.3E-41 T 11-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 APT56_04945 871ab7a547369c94f86c290dc897bcc4 217 Gene3D G3DSA:3.10.490.10 33 209 2.0E-10 T 11-10-2018 APT56_04945 871ab7a547369c94f86c290dc897bcc4 217 SUPERFAMILY SSF110857 41 155 5.3E-10 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily APT56_06070 74ae5462d1644b4a59872abeeebd7b73 242 Gene3D G3DSA:2.40.128.270 12 132 4.4E-16 T 11-10-2018 IPR038670 HslJ-like superfamily APT56_06070 74ae5462d1644b4a59872abeeebd7b73 242 Pfam PF14302 Domain of unknown function (DUF4377) 149 235 1.0E-22 T 11-10-2018 IPR025485 Domain of unknown function DUF4377 APT56_06070 74ae5462d1644b4a59872abeeebd7b73 242 Pfam PF03724 META domain 15 129 2.0E-14 T 11-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ APT56_09785 0673a1a4ebd8913d161e222f0c6b88f2 216 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 5.5E-81 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 APT56_09785 0673a1a4ebd8913d161e222f0c6b88f2 216 SUPERFAMILY SSF52016 1 201 4.32E-61 T 11-10-2018 APT56_09785 0673a1a4ebd8913d161e222f0c6b88f2 216 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 42.466 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 APT56_09785 0673a1a4ebd8913d161e222f0c6b88f2 216 Gene3D G3DSA:3.20.19.10 1 188 2.9E-75 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 APT56_09785 0673a1a4ebd8913d161e222f0c6b88f2 216 Pfam PF00694 Aconitase C-terminal domain 1 132 1.1E-37 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 Gene3D G3DSA:3.40.190.290 92 294 5.0E-43 T 11-10-2018 APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 SUPERFAMILY SSF46785 1 86 2.14E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 SUPERFAMILY SSF53850 89 292 3.04E-36 T 11-10-2018 APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 Gene3D G3DSA:1.10.10.10 1 91 3.2E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.3E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08850 a450358d7f31428c5a6e4b0d647152ed 314 Pfam PF03466 LysR substrate binding domain 87 291 2.3E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_05330 777cd12ac1382540a4532f90650ef4a0 334 Gene3D G3DSA:1.20.58.1130 8 222 1.9E-35 T 11-10-2018 APT56_05330 777cd12ac1382540a4532f90650ef4a0 334 Pfam PF01699 Sodium/calcium exchanger protein 194 326 8.7E-9 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 APT56_05330 777cd12ac1382540a4532f90650ef4a0 334 Pfam PF01699 Sodium/calcium exchanger protein 5 157 2.8E-13 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 APT56_05330 777cd12ac1382540a4532f90650ef4a0 334 Gene3D G3DSA:1.20.1420.30 35 305 1.9E-35 T 11-10-2018 APT56_11285 d52b13041d2bf240a7d1e0343bdf0a0a 630 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 225 626 2.3E-86 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_11285 d52b13041d2bf240a7d1e0343bdf0a0a 630 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 49 176 7.1E-29 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_11285 d52b13041d2bf240a7d1e0343bdf0a0a 630 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 216 624 1.6E-93 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_02190 2d95249b6f9e0d5fe6c15e30c24aa781 254 SUPERFAMILY SSF52172 81 144 6.04E-5 T 11-10-2018 IPR011006 CheY-like superfamily APT56_02190 2d95249b6f9e0d5fe6c15e30c24aa781 254 Gene3D G3DSA:1.10.10.60 185 243 3.2E-10 T 11-10-2018 APT56_02190 2d95249b6f9e0d5fe6c15e30c24aa781 254 Pfam PF02954 Bacterial regulatory protein, Fis family 201 237 1.4E-4 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_02190 2d95249b6f9e0d5fe6c15e30c24aa781 254 SUPERFAMILY SSF46689 189 241 4.03E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_18765 06614938085df643c054843ce526262e 306 SUPERFAMILY SSF46785 8 112 5.99E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18765 06614938085df643c054843ce526262e 306 Gene3D G3DSA:3.40.190.10 173 274 5.2E-35 T 11-10-2018 APT56_18765 06614938085df643c054843ce526262e 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 3.6E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18765 06614938085df643c054843ce526262e 306 Gene3D G3DSA:1.10.10.10 7 95 8.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18765 06614938085df643c054843ce526262e 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 3.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18765 06614938085df643c054843ce526262e 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 3.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18765 06614938085df643c054843ce526262e 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 3.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18765 06614938085df643c054843ce526262e 306 SUPERFAMILY SSF53850 95 303 7.47E-35 T 11-10-2018 APT56_18765 06614938085df643c054843ce526262e 306 Gene3D G3DSA:3.40.190.10 100 291 5.2E-35 T 11-10-2018 APT56_18765 06614938085df643c054843ce526262e 306 Pfam PF03466 LysR substrate binding domain 94 301 1.2E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_01765 39fb148cc52cb31848a252efadfaced8 113 Gene3D G3DSA:3.10.20.30 1 93 1.6E-20 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_01765 39fb148cc52cb31848a252efadfaced8 113 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 84 8.4E-12 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_01765 39fb148cc52cb31848a252efadfaced8 113 SUPERFAMILY SSF54292 2 92 1.44E-20 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_01765 39fb148cc52cb31848a252efadfaced8 113 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT56_10830 7f18190f457ddd066dc23b9ffaf55070 464 PIRSF PIRSF006603 6 452 1.5E-60 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_10830 7f18190f457ddd066dc23b9ffaf55070 464 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 429 3.1E-76 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_10830 7f18190f457ddd066dc23b9ffaf55070 464 Pfam PF01554 MatE 22 183 4.7E-30 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_10830 7f18190f457ddd066dc23b9ffaf55070 464 Pfam PF01554 MatE 250 414 9.6E-27 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_25655 27a3762ac721b7f2307dae5ba06a0511 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 176 7.6E-28 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_25655 27a3762ac721b7f2307dae5ba06a0511 187 Gene3D G3DSA:1.10.10.10 117 180 1.9E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25655 27a3762ac721b7f2307dae5ba06a0511 187 Pfam PF08281 Sigma-70, region 4 123 174 8.3E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_25655 27a3762ac721b7f2307dae5ba06a0511 187 SUPERFAMILY SSF88946 20 100 1.57E-18 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_25655 27a3762ac721b7f2307dae5ba06a0511 187 Gene3D G3DSA:1.10.1740.10 14 112 2.4E-18 T 11-10-2018 APT56_25655 27a3762ac721b7f2307dae5ba06a0511 187 SUPERFAMILY SSF88659 116 176 1.88E-13 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_25655 27a3762ac721b7f2307dae5ba06a0511 187 Pfam PF04542 Sigma-70 region 2 23 87 4.1E-14 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_18270 b9dd80e950b626de139aa1e294c2dcfb 254 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 2 244 3.1E-79 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 APT56_18270 b9dd80e950b626de139aa1e294c2dcfb 254 SUPERFAMILY SSF53448 3 249 1.64E-61 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_18270 b9dd80e950b626de139aa1e294c2dcfb 254 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 251 40.37 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 APT56_18270 b9dd80e950b626de139aa1e294c2dcfb 254 Gene3D G3DSA:3.90.550.10 1 250 7.5E-93 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_18270 b9dd80e950b626de139aa1e294c2dcfb 254 Pfam PF02348 Cytidylyltransferase 4 221 4.6E-52 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 APT56_26225 a2df35680e9cfda835b908ee34aef4ed 301 SUPERFAMILY SSF51735 9 168 2.27E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26225 a2df35680e9cfda835b908ee34aef4ed 301 PIRSF PIRSF000103 2 295 2.1E-68 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APT56_26225 a2df35680e9cfda835b908ee34aef4ed 301 Gene3D G3DSA:1.10.1040.10 171 296 3.9E-43 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_26225 a2df35680e9cfda835b908ee34aef4ed 301 SUPERFAMILY SSF48179 171 293 7.71E-38 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_26225 a2df35680e9cfda835b908ee34aef4ed 301 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 172 291 2.5E-37 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APT56_26225 a2df35680e9cfda835b908ee34aef4ed 301 Gene3D G3DSA:3.40.50.720 2 170 1.4E-48 T 11-10-2018 APT56_26225 a2df35680e9cfda835b908ee34aef4ed 301 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 10 166 2.0E-39 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 APT56_24285 9e07eb020d9dc7589d27631016c5a639 143 Pfam PF01042 Endoribonuclease L-PSP 16 138 1.1E-26 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_24285 9e07eb020d9dc7589d27631016c5a639 143 Gene3D G3DSA:3.30.1330.40 4 140 1.1E-41 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_24285 9e07eb020d9dc7589d27631016c5a639 143 SUPERFAMILY SSF55298 13 140 1.38E-33 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 Gene3D G3DSA:2.40.30.10 103 203 1.4E-21 T 11-10-2018 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 SUPERFAMILY SSF52343 204 338 2.88E-40 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 Pfam PF00970 Oxidoreductase FAD-binding domain 106 201 3.1E-12 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00410 Phenol hydroxylase reductase family signature 148 155 3.1E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 205 3.1E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00410 Phenol hydroxylase reductase family signature 212 231 3.1E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00410 Phenol hydroxylase reductase family signature 304 312 3.1E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00410 Phenol hydroxylase reductase family signature 237 246 3.1E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 144 3.1E-23 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 SUPERFAMILY SSF63380 103 203 1.25E-20 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 Gene3D G3DSA:3.40.50.80 204 339 6.4E-34 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 81 7.8E-16 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 SUPERFAMILY SSF54292 1 90 2.1E-28 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 Gene3D G3DSA:3.10.20.30 1 102 5.6E-28 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 Pfam PF00175 Oxidoreductase NAD-binding domain 213 318 3.6E-22 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 148 155 4.9E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 304 312 4.9E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 212 231 4.9E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_09420 6f6f9f299dcab423f013626b1a59ab2d 348 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 132 142 4.9E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APT56_21120 1b167420c32ff67c2954538d8b12c45e 279 Gene3D G3DSA:3.60.15.10 4 279 7.2E-83 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_21120 1b167420c32ff67c2954538d8b12c45e 279 SMART SM00849 55 257 4.6E-25 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_21120 1b167420c32ff67c2954538d8b12c45e 279 Pfam PF00753 Metallo-beta-lactamase superfamily 55 257 4.8E-26 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_21120 1b167420c32ff67c2954538d8b12c45e 279 SUPERFAMILY SSF56281 8 278 1.28E-49 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_22045 fc0f150a796cf5dca9089c20256b64a4 399 SUPERFAMILY SSF103473 7 390 1.1E-59 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_22045 fc0f150a796cf5dca9089c20256b64a4 399 Gene3D G3DSA:1.20.1250.20 3 200 9.3E-27 T 11-10-2018 APT56_22045 fc0f150a796cf5dca9089c20256b64a4 399 Gene3D G3DSA:1.20.1250.20 202 392 1.3E-21 T 11-10-2018 APT56_22045 fc0f150a796cf5dca9089c20256b64a4 399 Pfam PF07690 Major Facilitator Superfamily 18 341 1.7E-32 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_01615 43bb4bba25eeb9e805a26031b8c4b205 414 Pfam PF02321 Outer membrane efflux protein 40 214 3.8E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_01615 43bb4bba25eeb9e805a26031b8c4b205 414 Pfam PF02321 Outer membrane efflux protein 239 413 1.4E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_01615 43bb4bba25eeb9e805a26031b8c4b205 414 SUPERFAMILY SSF56954 6 413 2.09E-76 T 11-10-2018 APT56_01615 43bb4bba25eeb9e805a26031b8c4b205 414 Gene3D G3DSA:1.20.1600.10 16 414 6.3E-71 T 11-10-2018 APT56_07025 2694c856ef2b06c94f6c5b2a673c77e6 517 Gene3D G3DSA:3.10.105.10 263 490 1.5E-161 T 11-10-2018 APT56_07025 2694c856ef2b06c94f6c5b2a673c77e6 517 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 78 100 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site APT56_07025 2694c856ef2b06c94f6c5b2a673c77e6 517 SUPERFAMILY SSF53850 33 514 2.46E-139 T 11-10-2018 APT56_07025 2694c856ef2b06c94f6c5b2a673c77e6 517 Gene3D G3DSA:3.90.76.10 41 187 1.5E-161 T 11-10-2018 APT56_07025 2694c856ef2b06c94f6c5b2a673c77e6 517 Gene3D G3DSA:3.40.190.10 188 500 1.5E-161 T 11-10-2018 APT56_07025 2694c856ef2b06c94f6c5b2a673c77e6 517 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 431 4.0E-96 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_07025 2694c856ef2b06c94f6c5b2a673c77e6 517 PIRSF PIRSF002741 4 513 3.1E-111 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 PRINTS PR00067 Catalase signature 21 44 8.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 PRINTS PR00067 Catalase signature 124 142 8.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 PRINTS PR00067 Catalase signature 321 347 8.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 PRINTS PR00067 Catalase signature 289 316 8.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 PRINTS PR00067 Catalase signature 84 102 8.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 PRINTS PR00067 Catalase signature 105 122 8.4E-77 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 ProSitePatterns PS00438 Catalase proximal active site signature. 44 60 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 SMART SM01060 8 392 8.9E-301 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 SUPERFAMILY SSF56634 3 480 2.88E-222 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 334 342 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 Pfam PF00199 Catalase 8 388 1.3E-197 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 Gene3D G3DSA:2.40.180.10 3 481 1.3E-237 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 PIRSF PIRSF038928 1 481 6.2E-230 T 11-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_00265 82dce70e1cf43e1039814f676e6845e7 481 Pfam PF06628 Catalase-related immune-responsive 418 477 1.2E-23 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APT56_04000 48699773b41bb33890a6e5ff9b7975b4 251 SUPERFAMILY SSF52540 5 247 1.81E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04000 48699773b41bb33890a6e5ff9b7975b4 251 SMART SM00382 31 234 1.1E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_04000 48699773b41bb33890a6e5ff9b7975b4 251 Gene3D G3DSA:3.40.50.300 2 249 1.3E-58 T 11-10-2018 APT56_04000 48699773b41bb33890a6e5ff9b7975b4 251 Pfam PF00005 ABC transporter 23 178 5.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04000 48699773b41bb33890a6e5ff9b7975b4 251 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 247 2.4E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_02955 99e89186a303298c46a4a07cf9999c0b 221 Gene3D G3DSA:1.10.357.10 1 196 7.6E-19 T 11-10-2018 APT56_02955 99e89186a303298c46a4a07cf9999c0b 221 SUPERFAMILY SSF46689 2 60 3.34E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_02955 99e89186a303298c46a4a07cf9999c0b 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 6.7E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_02955 99e89186a303298c46a4a07cf9999c0b 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 6.7E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_02955 99e89186a303298c46a4a07cf9999c0b 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 5.3E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_19220 3355a02500c363b5126b8bb16fd44198 260 Gene3D G3DSA:3.40.225.10 16 256 3.6E-55 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_19220 3355a02500c363b5126b8bb16fd44198 260 SUPERFAMILY SSF53639 25 236 2.35E-65 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APT56_19220 3355a02500c363b5126b8bb16fd44198 260 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 34 211 1.8E-38 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_19220 3355a02500c363b5126b8bb16fd44198 260 SMART SM01007 33 211 2.8E-47 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APT56_22720 d0afac4905da7480bb9577241b2e2d10 277 SMART SM00346 9 99 2.0E-20 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_22720 d0afac4905da7480bb9577241b2e2d10 277 SUPERFAMILY SSF55781 67 274 5.3E-29 T 11-10-2018 APT56_22720 d0afac4905da7480bb9577241b2e2d10 277 Gene3D G3DSA:1.10.10.10 3 77 7.8E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22720 d0afac4905da7480bb9577241b2e2d10 277 Pfam PF09339 IclR helix-turn-helix domain 11 62 6.1E-15 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_22720 d0afac4905da7480bb9577241b2e2d10 277 Pfam PF01614 Bacterial transcriptional regulator 196 240 1.0E-5 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_22720 d0afac4905da7480bb9577241b2e2d10 277 SUPERFAMILY SSF46785 9 82 8.84E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22720 d0afac4905da7480bb9577241b2e2d10 277 Gene3D G3DSA:3.30.450.40 80 276 2.1E-26 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_11525 495f6eaddc231a3aa245109c271603ed 194 Gene3D G3DSA:3.40.630.30 5 169 1.8E-50 T 11-10-2018 APT56_11525 495f6eaddc231a3aa245109c271603ed 194 SUPERFAMILY SSF55729 6 166 1.92E-43 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_11525 495f6eaddc231a3aa245109c271603ed 194 Pfam PF13302 Acetyltransferase (GNAT) domain 8 142 7.1E-22 T 11-10-2018 IPR000182 GNAT domain APT56_02240 3a0be64f4137ffdd65dcc87feb002329 303 SUPERFAMILY SSF52540 79 268 2.0E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02240 3a0be64f4137ffdd65dcc87feb002329 303 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 49 273 2.3E-112 T 11-10-2018 IPR022488 Polyphosphate kinase-2-related APT56_02240 3a0be64f4137ffdd65dcc87feb002329 303 Gene3D G3DSA:3.40.50.300 9 288 2.6E-96 T 11-10-2018 APT56_02240 3a0be64f4137ffdd65dcc87feb002329 303 PIRSF PIRSF028756 14 303 9.2E-135 T 11-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 APT56_02240 3a0be64f4137ffdd65dcc87feb002329 303 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 49 274 1.0E-114 T 11-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 APT56_22475 89563ff3b4901f972572ce7f2e894c8a 143 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 24 111 7.3E-19 T 11-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 APT56_22475 89563ff3b4901f972572ce7f2e894c8a 143 SUPERFAMILY SSF51316 1 133 8.68E-47 T 11-10-2018 IPR011057 Mss4-like superfamily APT56_22475 89563ff3b4901f972572ce7f2e894c8a 143 Gene3D G3DSA:2.170.150.70 2 114 1.2E-17 T 11-10-2018 APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 Gene3D G3DSA:3.40.50.720 1 248 8.2E-54 T 11-10-2018 APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.0E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.0E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.0E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.0E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.0E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.0E-20 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 Pfam PF00106 short chain dehydrogenase 5 199 4.0E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17575 d9859e1dd00a312152c3ecb0927b314d 251 SUPERFAMILY SSF51735 3 238 5.88E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_03655 26d7b1b902dd5dfac820c0c79353d43b 90 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 7 73 1.4E-8 T 11-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 APT56_03655 26d7b1b902dd5dfac820c0c79353d43b 90 Gene3D G3DSA:1.20.5.420 4 73 8.8E-6 T 11-10-2018 APT56_19870 58c69dbf7ee711348c6bc4ed523df1e1 420 Pfam PF00202 Aminotransferase class-III 24 416 6.5E-122 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_19870 58c69dbf7ee711348c6bc4ed523df1e1 420 PIRSF PIRSF000521 122 420 3.3E-43 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_19870 58c69dbf7ee711348c6bc4ed523df1e1 420 PIRSF PIRSF000521 3 127 0.0015 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_19870 58c69dbf7ee711348c6bc4ed523df1e1 420 SUPERFAMILY SSF53383 23 418 9.28E-130 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_19870 58c69dbf7ee711348c6bc4ed523df1e1 420 Gene3D G3DSA:3.40.640.10 58 317 1.2E-152 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_19870 58c69dbf7ee711348c6bc4ed523df1e1 420 Gene3D G3DSA:3.90.1150.10 9 414 1.2E-152 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_19870 58c69dbf7ee711348c6bc4ed523df1e1 420 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_19870 58c69dbf7ee711348c6bc4ed523df1e1 420 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 9 419 5.7E-181 T 11-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 APT56_21650 93899585f3283eea3f92a6e7b9aa88fd 96 SUPERFAMILY SSF54909 1 96 2.52E-30 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_21650 93899585f3283eea3f92a6e7b9aa88fd 96 Gene3D G3DSA:3.30.70.100 1 96 5.4E-39 T 11-10-2018 APT56_21650 93899585f3283eea3f92a6e7b9aa88fd 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 77 1.1E-12 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain APT56_22335 9a7a525d51f482005eb950be1c34817e 279 SUPERFAMILY SSF161098 69 256 6.93E-29 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22335 9a7a525d51f482005eb950be1c34817e 279 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 4 50 3.4E-8 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_22335 9a7a525d51f482005eb950be1c34817e 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 274 6.4E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_22335 9a7a525d51f482005eb950be1c34817e 279 Gene3D G3DSA:1.10.3720.10 65 274 8.6E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19295 257a04970233916a0ac667bc4218527b 450 Pfam PF07690 Major Facilitator Superfamily 5 391 4.4E-45 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_19295 257a04970233916a0ac667bc4218527b 450 SUPERFAMILY SSF103473 2 429 1.18E-57 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_19295 257a04970233916a0ac667bc4218527b 450 Gene3D G3DSA:1.20.1720.10 1 204 1.1E-38 T 11-10-2018 APT56_19295 257a04970233916a0ac667bc4218527b 450 Gene3D G3DSA:1.20.1250.20 240 433 1.0E-18 T 11-10-2018 APT56_03860 2e094b2d143b1f2d0e3a0d61918d796d 330 Gene3D G3DSA:3.40.190.150 36 320 2.8E-113 T 11-10-2018 APT56_03860 2e094b2d143b1f2d0e3a0d61918d796d 330 PIRSF PIRSF017082 1 330 1.2E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_03860 2e094b2d143b1f2d0e3a0d61918d796d 330 SUPERFAMILY SSF53850 110 292 1.2E-13 T 11-10-2018 APT56_03860 2e094b2d143b1f2d0e3a0d61918d796d 330 Gene3D G3DSA:3.40.190.10 133 255 2.8E-113 T 11-10-2018 APT56_03860 2e094b2d143b1f2d0e3a0d61918d796d 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 326 8.2E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21300 2b15025885737b7dd33b023726c015a6 318 Gene3D G3DSA:3.20.20.100 1 317 6.5E-99 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_21300 2b15025885737b7dd33b023726c015a6 318 SUPERFAMILY SSF51430 1 312 2.36E-90 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_21300 2b15025885737b7dd33b023726c015a6 318 Pfam PF00248 Aldo/keto reductase family 15 311 3.0E-68 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_03085 3061e75558d0262e6b6446b8342ccef0 141 SUPERFAMILY SSF54637 3 137 4.91E-38 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_03085 3061e75558d0262e6b6446b8342ccef0 141 Pfam PF13279 Thioesterase-like superfamily 11 132 2.3E-7 T 11-10-2018 APT56_03085 3061e75558d0262e6b6446b8342ccef0 141 Gene3D G3DSA:3.10.129.10 1 139 1.5E-36 T 11-10-2018 APT56_01610 d8f0ab545b5c0a8a8c5aca3e4b5fa5c0 407 Gene3D G3DSA:1.10.287.470 142 212 8.1E-77 T 11-10-2018 APT56_01610 d8f0ab545b5c0a8a8c5aca3e4b5fa5c0 407 Gene3D G3DSA:2.40.50.100 108 249 8.1E-77 T 11-10-2018 APT56_01610 d8f0ab545b5c0a8a8c5aca3e4b5fa5c0 407 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 91 322 1.3E-42 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_01610 d8f0ab545b5c0a8a8c5aca3e4b5fa5c0 407 Gene3D G3DSA:2.40.30.170 94 328 8.1E-77 T 11-10-2018 APT56_01610 d8f0ab545b5c0a8a8c5aca3e4b5fa5c0 407 Gene3D G3DSA:2.40.420.20 84 386 8.1E-77 T 11-10-2018 APT56_01610 d8f0ab545b5c0a8a8c5aca3e4b5fa5c0 407 SUPERFAMILY SSF111369 103 326 8.24E-23 T 11-10-2018 APT56_01610 d8f0ab545b5c0a8a8c5aca3e4b5fa5c0 407 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 83 396 3.7E-51 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_11735 20de4af72f5e798c8965fc52ad2058f0 292 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 19 59 9.1E-13 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_11735 20de4af72f5e798c8965fc52ad2058f0 292 Gene3D G3DSA:1.10.3720.10 81 287 2.3E-28 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11735 20de4af72f5e798c8965fc52ad2058f0 292 SUPERFAMILY SSF161098 85 278 9.29E-34 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11735 20de4af72f5e798c8965fc52ad2058f0 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 290 1.4E-34 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 Pfam PF00849 RNA pseudouridylate synthase 126 283 2.9E-31 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 SUPERFAMILY SSF55174 53 104 1.68E-9 T 11-10-2018 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 SMART SM00363 52 117 1.4E-5 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 169 183 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 SUPERFAMILY SSF55120 112 341 1.52E-65 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 Gene3D G3DSA:3.30.2350.10 119 341 2.2E-62 T 11-10-2018 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 49 338 2.5E-76 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 Pfam PF01479 S4 domain 53 98 7.9E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_07320 77c8f85ef8f18dd8780877c5dbaf9dfa 344 Gene3D G3DSA:3.10.290.10 41 105 8.2E-16 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_26645 a70e25fe6fe4fc57d9f4d51270bcec56 210 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 12 181 8.1E-39 T 11-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related APT56_26645 a70e25fe6fe4fc57d9f4d51270bcec56 210 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 8 181 8.0E-40 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 APT56_04840 b004271cca98187619e1c28d9e3f5066 349 SUPERFAMILY SSF55326 9 172 1.92E-52 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_04840 b004271cca98187619e1c28d9e3f5066 349 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 9 348 46.372 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_04840 b004271cca98187619e1c28d9e3f5066 349 Pfam PF02769 AIR synthase related protein, C-terminal domain 178 341 6.6E-37 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APT56_04840 b004271cca98187619e1c28d9e3f5066 349 Pfam PF00586 AIR synthase related protein, N-terminal domain 60 166 7.0E-14 T 11-10-2018 IPR016188 PurM-like, N-terminal domain APT56_04840 b004271cca98187619e1c28d9e3f5066 349 Gene3D G3DSA:3.90.650.10 174 349 3.7E-68 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_04840 b004271cca98187619e1c28d9e3f5066 349 SUPERFAMILY SSF56042 173 345 1.23E-58 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APT56_04840 b004271cca98187619e1c28d9e3f5066 349 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 9 338 8.1E-136 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APT56_04840 b004271cca98187619e1c28d9e3f5066 349 Gene3D G3DSA:3.30.1330.10 8 172 1.7E-67 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APT56_21210 f36fe68c61c06315c463b6e0cd8ccba8 129 Pfam PF00486 Transcriptional regulatory protein, C terminal 41 119 1.8E-11 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_21210 f36fe68c61c06315c463b6e0cd8ccba8 129 SMART SM00862 41 119 1.1E-10 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_21210 f36fe68c61c06315c463b6e0cd8ccba8 129 SUPERFAMILY SSF46894 34 120 7.09E-13 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_21210 f36fe68c61c06315c463b6e0cd8ccba8 129 Gene3D G3DSA:1.10.10.10 30 127 3.1E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15860 7b51db37d0ba26aca6ab378f450c41ae 279 Pfam PF09339 IclR helix-turn-helix domain 33 78 1.3E-12 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_15860 7b51db37d0ba26aca6ab378f450c41ae 279 Gene3D G3DSA:1.10.10.10 30 101 5.8E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15860 7b51db37d0ba26aca6ab378f450c41ae 279 SMART SM00346 29 118 1.6E-6 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_15860 7b51db37d0ba26aca6ab378f450c41ae 279 Gene3D G3DSA:3.30.450.40 102 276 8.5E-51 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_15860 7b51db37d0ba26aca6ab378f450c41ae 279 SUPERFAMILY SSF46785 32 99 1.5E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15860 7b51db37d0ba26aca6ab378f450c41ae 279 SUPERFAMILY SSF55781 103 272 2.01E-46 T 11-10-2018 APT56_15860 7b51db37d0ba26aca6ab378f450c41ae 279 Pfam PF01614 Bacterial transcriptional regulator 150 269 8.2E-30 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_01270 d5ab4322ed233ac41115e35b22cb5560 262 Pfam PF02405 Permease MlaE 47 258 7.4E-75 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 APT56_01270 d5ab4322ed233ac41115e35b22cb5560 262 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 20 260 2.6E-82 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria APT56_10605 b3be130091dafe26cdd387faf3c0c75d 307 PIRSF PIRSF028561 3 307 4.8E-102 T 11-10-2018 IPR014548 Predicted acyltransferase APT56_10605 b3be130091dafe26cdd387faf3c0c75d 307 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 101 304 1.5E-7 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APT56_18060 a2d6f71859f24f0007f9f3c10f907c0b 223 TIGRFAM TIGR03003 ectoine_ehuD: ectoine/hydroxyectoine ABC transporter, permease protein EhuD 5 216 3.9E-92 T 11-10-2018 IPR014341 Ectoine/hydroxyectoine ABC transporter, permease protein EhuD APT56_18060 a2d6f71859f24f0007f9f3c10f907c0b 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 9.7E-26 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_18060 a2d6f71859f24f0007f9f3c10f907c0b 223 Gene3D G3DSA:1.10.3720.10 4 219 2.0E-52 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18060 a2d6f71859f24f0007f9f3c10f907c0b 223 SUPERFAMILY SSF161098 16 217 1.01E-41 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18060 a2d6f71859f24f0007f9f3c10f907c0b 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 217 3.9E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 PIRSF PIRSF005419 2 704 2.9E-245 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 20 700 2.5E-272 T 11-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 Gene3D G3DSA:1.10.490.80 607 700 4.5E-9 T 11-10-2018 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 144 167 - T 11-10-2018 IPR025505 FHIPEP conserved site APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 Gene3D G3DSA:1.10.8.540 505 604 9.5E-23 T 11-10-2018 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 35 48 3.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 139 155 3.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 188 205 3.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 72 91 3.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 158 176 3.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 239 253 3.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 Pfam PF00771 FHIPEP family 28 691 2.1E-271 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 APT56_11955 22f256180847ae08d0d4d5e23a06549f 706 Gene3D G3DSA:3.40.30.60 362 504 1.7E-50 T 11-10-2018 APT56_26850 cb7371e96867d734852c4ac7b36ba472 290 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 274 3.5E-33 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_17980 11d1e86c6cd08e15cf8ca18fda2ff952 221 SUPERFAMILY SSF53328 10 208 3.27E-64 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_17980 11d1e86c6cd08e15cf8ca18fda2ff952 221 Pfam PF00551 Formyl transferase 10 189 1.3E-59 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APT56_17980 11d1e86c6cd08e15cf8ca18fda2ff952 221 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 10 198 9.8E-75 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 APT56_17980 11d1e86c6cd08e15cf8ca18fda2ff952 221 Gene3D G3DSA:3.40.50.170 3 210 4.9E-78 T 11-10-2018 APT56_17980 11d1e86c6cd08e15cf8ca18fda2ff952 221 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 10 195 31.518 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 APT56_06895 5e2aa1209471859d829d2a236d208f96 151 Gene3D G3DSA:3.40.50.10110 4 144 6.8E-38 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily APT56_06895 5e2aa1209471859d829d2a236d208f96 151 SUPERFAMILY SSF102400 1 144 3.92E-39 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily APT56_06895 5e2aa1209471859d829d2a236d208f96 151 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 139 1.9E-38 T 11-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 APT56_21480 901554ad972f2aface9fa89e59b55413 152 SMART SM00411 55 152 1.7E-15 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_21480 901554ad972f2aface9fa89e59b55413 152 Gene3D G3DSA:4.10.520.10 55 151 3.7E-13 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APT56_21480 901554ad972f2aface9fa89e59b55413 152 SUPERFAMILY SSF47729 55 151 6.62E-14 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APT56_21480 901554ad972f2aface9fa89e59b55413 152 Pfam PF00216 Bacterial DNA-binding protein 55 151 5.0E-16 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_16710 f8e02f4fd1248c013cc142667c355ed1 204 SUPERFAMILY SSF141571 66 175 4.22E-15 T 11-10-2018 APT56_16710 f8e02f4fd1248c013cc142667c355ed1 204 Pfam PF00805 Pentapeptide repeats (8 copies) 122 157 2.7E-6 T 11-10-2018 IPR001646 Pentapeptide repeat APT56_16710 f8e02f4fd1248c013cc142667c355ed1 204 Gene3D G3DSA:2.160.20.100 47 184 3.4E-17 T 11-10-2018 APT56_22170 3b57b8631d3735bd374a69899234a875 146 Gene3D G3DSA:3.10.129.10 1 143 2.1E-39 T 11-10-2018 APT56_22170 3b57b8631d3735bd374a69899234a875 146 SUPERFAMILY SSF54637 2 141 3.46E-34 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_22170 3b57b8631d3735bd374a69899234a875 146 Pfam PF01575 MaoC like domain 15 109 7.6E-16 T 11-10-2018 IPR002539 MaoC-like dehydratase domain APT56_17700 9393adcbae7694bd64d2eb787dce83e8 163 Gene3D G3DSA:3.40.50.2300 1 158 1.2E-58 T 11-10-2018 APT56_17700 9393adcbae7694bd64d2eb787dce83e8 163 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 148 2.5E-42 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I APT56_17700 9393adcbae7694bd64d2eb787dce83e8 163 SMART SM00226 3 152 1.6E-51 T 11-10-2018 IPR023485 Phosphotyrosine protein phosphatase I APT56_17700 9393adcbae7694bd64d2eb787dce83e8 163 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 6.3E-23 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 APT56_17700 9393adcbae7694bd64d2eb787dce83e8 163 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 48 64 6.3E-23 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 APT56_17700 9393adcbae7694bd64d2eb787dce83e8 163 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 124 139 6.3E-23 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 APT56_17700 9393adcbae7694bd64d2eb787dce83e8 163 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 82 97 6.3E-23 T 11-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 APT56_17700 9393adcbae7694bd64d2eb787dce83e8 163 SUPERFAMILY SSF52788 1 153 3.92E-54 T 11-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily APT56_04195 6929912109744cc80113b5e96ff24c8b 103 Gene3D G3DSA:1.10.20.30 1 45 5.8E-12 T 11-10-2018 APT56_04195 6929912109744cc80113b5e96ff24c8b 103 SUPERFAMILY SSF102829 3 97 1.15E-20 T 11-10-2018 IPR036192 Cell division protein ZapA-like superfamily APT56_04195 6929912109744cc80113b5e96ff24c8b 103 Pfam PF05164 Cell division protein ZapA 4 89 3.3E-19 T 11-10-2018 IPR007838 Cell division protein ZapA-like APT56_09010 19e21b1a8d15d2572cff43a63c1b76ad 509 SUPERFAMILY SSF75304 8 498 1.96E-102 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_09010 19e21b1a8d15d2572cff43a63c1b76ad 509 ProSitePatterns PS00571 Amidases signature. 168 199 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT56_09010 19e21b1a8d15d2572cff43a63c1b76ad 509 Gene3D G3DSA:3.90.1300.10 7 508 1.9E-122 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_09010 19e21b1a8d15d2572cff43a63c1b76ad 509 Pfam PF01425 Amidase 33 489 1.3E-73 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_09865 eaf3a4f789c372dda940662b3d299def 593 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 127 137 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_09865 eaf3a4f789c372dda940662b3d299def 593 SUPERFAMILY SSF52016 381 577 6.43E-46 T 11-10-2018 APT56_09865 eaf3a4f789c372dda940662b3d299def 593 Gene3D G3DSA:3.50.30.80 381 545 1.0E-33 T 11-10-2018 APT56_09865 eaf3a4f789c372dda940662b3d299def 593 Pfam PF00920 Dehydratase family 44 570 2.9E-152 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_09865 eaf3a4f789c372dda940662b3d299def 593 SUPERFAMILY SSF143975 6 378 2.22E-113 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APT56_02320 6c201113ac8aa17fa14f2988d578cf13 323 SUPERFAMILY SSF51412 13 307 3.11E-57 T 11-10-2018 APT56_02320 6c201113ac8aa17fa14f2988d578cf13 323 Pfam PF03060 Nitronate monooxygenase 88 249 9.8E-22 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APT56_02320 6c201113ac8aa17fa14f2988d578cf13 323 Gene3D G3DSA:3.20.20.70 6 321 6.2E-70 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_16680 28aed389617dfd4257a3f41052090734 100 Pfam PF12840 Helix-turn-helix domain 5 77 5.5E-12 T 11-10-2018 APT56_16680 28aed389617dfd4257a3f41052090734 100 SUPERFAMILY SSF46785 2 96 5.55E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16680 28aed389617dfd4257a3f41052090734 100 SMART SM00418 5 94 3.0E-10 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_16680 28aed389617dfd4257a3f41052090734 100 Gene3D G3DSA:1.10.10.10 1 99 9.7E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27580 8daa799a25747d47703e79a525059e75 213 ProSitePatterns PS01128 Shikimate kinase signature. 97 122 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APT56_27580 8daa799a25747d47703e79a525059e75 213 PRINTS PR01100 Shikimate kinase family signature 44 59 5.9E-25 T 11-10-2018 APT56_27580 8daa799a25747d47703e79a525059e75 213 PRINTS PR01100 Shikimate kinase family signature 114 123 5.9E-25 T 11-10-2018 APT56_27580 8daa799a25747d47703e79a525059e75 213 PRINTS PR01100 Shikimate kinase family signature 68 81 5.9E-25 T 11-10-2018 APT56_27580 8daa799a25747d47703e79a525059e75 213 PRINTS PR01100 Shikimate kinase family signature 96 104 5.9E-25 T 11-10-2018 APT56_27580 8daa799a25747d47703e79a525059e75 213 PRINTS PR01100 Shikimate kinase family signature 135 152 5.9E-25 T 11-10-2018 APT56_27580 8daa799a25747d47703e79a525059e75 213 Pfam PF01202 Shikimate kinase 50 206 6.0E-49 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APT56_27580 8daa799a25747d47703e79a525059e75 213 Gene3D G3DSA:3.40.50.300 43 212 8.8E-53 T 11-10-2018 APT56_27580 8daa799a25747d47703e79a525059e75 213 Hamap MF_00109 Shikimate kinase [aroK]. 41 207 28.999 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APT56_27580 8daa799a25747d47703e79a525059e75 213 SUPERFAMILY SSF52540 44 203 6.48E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 Pfam PF12796 Ankyrin repeats (3 copies) 9 98 1.4E-13 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 Pfam PF12796 Ankyrin repeats (3 copies) 101 161 9.3E-9 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 Gene3D G3DSA:1.25.40.20 2 105 1.2E-26 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 PRINTS PR01415 Ankyrin repeat signature 37 52 4.5E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 PRINTS PR01415 Ankyrin repeat signature 85 99 4.5E-5 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 SUPERFAMILY SSF48403 8 161 3.93E-36 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 Gene3D G3DSA:1.25.40.960 106 163 1.2E-13 T 11-10-2018 APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 SMART SM00248 102 131 0.057 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 SMART SM00248 69 98 0.0032 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 SMART SM00248 36 65 0.13 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_10335 99a4f6754e3a06e1b3e49a7b6af5c62f 167 SMART SM00248 135 164 320.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 APT56_18420 5ed27448b43069c107b974de62e5218d 287 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 152 177 - T 11-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 APT56_18420 5ed27448b43069c107b974de62e5218d 287 TIGRFAM TIGR03465 HpnD: squalene synthase HpnD 10 275 1.6E-119 T 11-10-2018 IPR017828 Squalene synthase HpnD-like GO:0016117|GO:0016767 APT56_18420 5ed27448b43069c107b974de62e5218d 287 SUPERFAMILY SSF48576 3 276 9.78E-92 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APT56_18420 5ed27448b43069c107b974de62e5218d 287 Gene3D G3DSA:1.10.600.10 4 274 6.0E-88 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APT56_18420 5ed27448b43069c107b974de62e5218d 287 Pfam PF00494 Squalene/phytoene synthase 13 264 5.7E-81 T 11-10-2018 APT56_23045 43670644f70706fad85536c2ad0222cb 122 PIRSF PIRSF029720 1 122 8.9E-50 T 11-10-2018 IPR014558 Uncharacterised conserved lipoprotein APT56_23045 43670644f70706fad85536c2ad0222cb 122 Pfam PF03640 Secreted repeat of unknown function 25 65 4.7E-15 T 11-10-2018 IPR005297 Lipoprotein repeat APT56_23045 43670644f70706fad85536c2ad0222cb 122 Pfam PF03640 Secreted repeat of unknown function 78 121 9.7E-21 T 11-10-2018 IPR005297 Lipoprotein repeat APT56_05065 8fbf8eeb7e8a52e2d12a974baa7efceb 247 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 220 238 1.4E-4 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_05065 8fbf8eeb7e8a52e2d12a974baa7efceb 247 Pfam PF00005 ABC transporter 22 167 1.6E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_05065 8fbf8eeb7e8a52e2d12a974baa7efceb 247 Gene3D G3DSA:3.40.50.300 2 240 4.6E-56 T 11-10-2018 APT56_05065 8fbf8eeb7e8a52e2d12a974baa7efceb 247 SMART SM00382 30 239 3.0E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05065 8fbf8eeb7e8a52e2d12a974baa7efceb 247 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05065 8fbf8eeb7e8a52e2d12a974baa7efceb 247 SUPERFAMILY SSF52540 5 238 5.22E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14030 6280085deabf77c27b43eb19056ed92b 481 PIRSF PIRSF012702 1 481 3.6E-168 T 11-10-2018 IPR009197 Microcystin LR degradation protein MlrC APT56_14030 6280085deabf77c27b43eb19056ed92b 481 Pfam PF07364 Metallopeptidase family M81 2 288 1.6E-89 T 11-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal APT56_14030 6280085deabf77c27b43eb19056ed92b 481 Pfam PF07171 MlrC C-terminus 297 471 1.5E-50 T 11-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal APT56_27750 05aa936f495386757c21fc2a5a9b4441 475 Pfam PF00171 Aldehyde dehydrogenase family 14 471 5.3E-157 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_27750 05aa936f495386757c21fc2a5a9b4441 475 SUPERFAMILY SSF53720 3 473 5.11E-162 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_27750 05aa936f495386757c21fc2a5a9b4441 475 Gene3D G3DSA:3.40.605.10 9 470 6.9E-165 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_27750 05aa936f495386757c21fc2a5a9b4441 475 Gene3D G3DSA:3.40.309.10 253 442 6.9E-165 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_12000 f132042008e6212977a1caf372e1d6c9 253 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 173 248 4.7E-17 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain APT56_12000 f132042008e6212977a1caf372e1d6c9 253 Pfam PF00460 Flagella basal body rod protein 5 35 8.8E-6 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 APT56_12000 f132042008e6212977a1caf372e1d6c9 253 SUPERFAMILY SSF117143 78 211 9.02E-13 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like APT56_12000 f132042008e6212977a1caf372e1d6c9 253 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 122 3.2E-30 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G APT56_12000 f132042008e6212977a1caf372e1d6c9 253 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site APT56_22965 a02d1949d3d8c00e1e391004a471e11e 141 PRINTS PR01438 Universal stress protein signature 119 141 5.2E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_22965 a02d1949d3d8c00e1e391004a471e11e 141 PRINTS PR01438 Universal stress protein signature 1 18 5.2E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_22965 a02d1949d3d8c00e1e391004a471e11e 141 PRINTS PR01438 Universal stress protein signature 101 113 5.2E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_22965 a02d1949d3d8c00e1e391004a471e11e 141 Pfam PF00582 Universal stress protein family 1 141 2.0E-22 T 11-10-2018 IPR006016 UspA APT56_22965 a02d1949d3d8c00e1e391004a471e11e 141 Gene3D G3DSA:3.40.50.620 1 141 1.1E-26 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_22965 a02d1949d3d8c00e1e391004a471e11e 141 SUPERFAMILY SSF52402 1 141 9.21E-26 T 11-10-2018 APT56_06265 203c5777269b0ee143c6d078a510eb3b 520 PIRSF PIRSF002741 5 518 2.7E-98 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_06265 203c5777269b0ee143c6d078a510eb3b 520 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 423 4.8E-92 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_06265 203c5777269b0ee143c6d078a510eb3b 520 Gene3D G3DSA:3.40.190.10 192 504 6.3E-122 T 11-10-2018 APT56_06265 203c5777269b0ee143c6d078a510eb3b 520 SUPERFAMILY SSF53850 24 515 4.45E-122 T 11-10-2018 APT56_06265 203c5777269b0ee143c6d078a510eb3b 520 Gene3D G3DSA:3.90.76.10 42 191 6.3E-122 T 11-10-2018 APT56_06265 203c5777269b0ee143c6d078a510eb3b 520 Gene3D G3DSA:3.10.105.10 284 494 6.3E-122 T 11-10-2018 APT56_03460 720494b0ba9ea29e79338cd654d666c6 293 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 277 4.6E-49 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_24885 3c714a986069163e35fb8867a66b41dd 126 Pfam PF13698 Domain of unknown function (DUF4156) 36 125 3.0E-30 T 11-10-2018 IPR025294 Protein of unknown function DUF4156 APT56_24150 8fea358a7b0f20ad046f5bef1267c4ae 382 Gene3D G3DSA:3.40.50.880 48 275 9.4E-46 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_24150 8fea358a7b0f20ad046f5bef1267c4ae 382 SUPERFAMILY SSF52317 62 239 5.02E-40 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_24150 8fea358a7b0f20ad046f5bef1267c4ae 382 Pfam PF01965 DJ-1/PfpI family 63 224 4.2E-17 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 PIRSF PIRSF000429 1 427 1.5E-128 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 Pfam PF02803 Thiolase, C-terminal domain 288 424 2.5E-39 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 Gene3D G3DSA:3.40.47.10 128 424 9.9E-124 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 Gene3D G3DSA:3.40.47.10 8 293 9.9E-124 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 Pfam PF00108 Thiolase, N-terminal domain 6 280 2.2E-56 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 SUPERFAMILY SSF53901 6 287 1.05E-61 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 ProSitePatterns PS00099 Thiolases active site. 407 420 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 ProSitePatterns PS00737 Thiolases signature 2. 372 388 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 SUPERFAMILY SSF53901 289 424 3.1E-37 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_20010 99c2845eff1868aa2d577ab040cca401 430 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 424 1.5E-125 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_11785 a8dc8516f5089111b9953c1d62df52a6 397 Gene3D G3DSA:2.40.30.170 50 305 5.6E-113 T 11-10-2018 APT56_11785 a8dc8516f5089111b9953c1d62df52a6 397 SUPERFAMILY SSF111369 52 302 1.44E-86 T 11-10-2018 APT56_11785 a8dc8516f5089111b9953c1d62df52a6 397 Gene3D G3DSA:2.40.420.20 306 375 5.6E-113 T 11-10-2018 APT56_11785 a8dc8516f5089111b9953c1d62df52a6 397 Gene3D G3DSA:2.40.50.100 64 208 5.6E-113 T 11-10-2018 APT56_11785 a8dc8516f5089111b9953c1d62df52a6 397 Gene3D G3DSA:1.10.287.470 99 172 5.6E-113 T 11-10-2018 APT56_11785 a8dc8516f5089111b9953c1d62df52a6 397 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 376 8.5E-82 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_11785 a8dc8516f5089111b9953c1d62df52a6 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 295 4.1E-14 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_17200 ff309995711ab501694866c1b1819456 4887 Pfam PF05860 haemagglutination activity domain 42 153 4.4E-24 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_17200 ff309995711ab501694866c1b1819456 4887 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 75 150 7.7E-23 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_17200 ff309995711ab501694866c1b1819456 4887 SUPERFAMILY SSF51126 44 347 1.88E-45 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APT56_17200 ff309995711ab501694866c1b1819456 4887 Gene3D G3DSA:2.160.20.10 42 438 6.3E-95 T 11-10-2018 IPR012334 Pectin lyase fold APT56_17200 ff309995711ab501694866c1b1819456 4887 SMART SM00912 40 153 2.7E-42 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 Gene3D G3DSA:3.40.50.720 1 253 8.9E-79 T 11-10-2018 APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 252 2.4E-56 T 11-10-2018 APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.8E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.8E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.8E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.8E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.8E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.8E-39 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.9E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17465 fbf36c41f6acf6e41d2c2d7b77ad5d72 253 SUPERFAMILY SSF51735 9 252 4.63E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_04395 26a41c9a3e9312db648c2af1d21dad92 247 Gene3D G3DSA:1.20.120.530 79 216 8.0E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_04395 26a41c9a3e9312db648c2af1d21dad92 247 SUPERFAMILY SSF46785 15 79 5.22E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04395 26a41c9a3e9312db648c2af1d21dad92 247 SMART SM00345 17 75 4.2E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_04395 26a41c9a3e9312db648c2af1d21dad92 247 Gene3D G3DSA:1.10.10.10 1 76 1.4E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04395 26a41c9a3e9312db648c2af1d21dad92 247 SUPERFAMILY SSF48008 81 216 4.97E-27 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_04395 26a41c9a3e9312db648c2af1d21dad92 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 73 3.3E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_04395 26a41c9a3e9312db648c2af1d21dad92 247 SMART SM00895 85 208 4.4E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_04395 26a41c9a3e9312db648c2af1d21dad92 247 Pfam PF07729 FCD domain 86 207 2.3E-26 T 11-10-2018 IPR011711 GntR, C-terminal APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.292 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 Gene3D G3DSA:3.30.70.141 1 141 1.6E-59 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 11-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 6.5E-40 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 6.5E-40 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 6.5E-40 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 6.5E-40 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 6.5E-40 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 SMART SM00562 3 140 1.2E-83 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 Pfam PF00334 Nucleoside diphosphate kinase 4 136 2.0E-54 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_09500 ac98dffb977aeefe5c8686dc954a4050 141 SUPERFAMILY SSF54919 1 139 4.19E-56 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_08005 17b79915f0648fb33182003ecacca381 287 SUPERFAMILY SSF53850 90 283 3.51E-36 T 11-10-2018 APT56_08005 17b79915f0648fb33182003ecacca381 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08005 17b79915f0648fb33182003ecacca381 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08005 17b79915f0648fb33182003ecacca381 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.0E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08005 17b79915f0648fb33182003ecacca381 287 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 5 283 5.3E-127 T 11-10-2018 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type APT56_08005 17b79915f0648fb33182003ecacca381 287 SUPERFAMILY SSF46785 6 103 1.25E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08005 17b79915f0648fb33182003ecacca381 287 Gene3D G3DSA:3.40.190.290 91 286 1.2E-36 T 11-10-2018 APT56_08005 17b79915f0648fb33182003ecacca381 287 Pfam PF03466 LysR substrate binding domain 88 283 1.3E-35 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_08005 17b79915f0648fb33182003ecacca381 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 6.8E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08005 17b79915f0648fb33182003ecacca381 287 Gene3D G3DSA:1.10.10.10 1 90 1.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23955 30bc358110870cbebd1d6cd96b648a94 580 SUPERFAMILY SSF90123 10 326 5.36E-41 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_23955 30bc358110870cbebd1d6cd96b648a94 580 Gene3D G3DSA:1.20.1560.10 3 326 6.5E-34 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_23955 30bc358110870cbebd1d6cd96b648a94 580 Pfam PF00664 ABC transporter transmembrane region 35 292 9.1E-8 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_23955 30bc358110870cbebd1d6cd96b648a94 580 SUPERFAMILY SSF52540 340 578 3.48E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_23955 30bc358110870cbebd1d6cd96b648a94 580 SMART SM00382 368 554 1.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23955 30bc358110870cbebd1d6cd96b648a94 580 Pfam PF00005 ABC transporter 359 508 2.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_23955 30bc358110870cbebd1d6cd96b648a94 580 ProSitePatterns PS00211 ABC transporters family signature. 480 494 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_23955 30bc358110870cbebd1d6cd96b648a94 580 Gene3D G3DSA:3.40.50.300 338 580 3.7E-84 T 11-10-2018 APT56_25070 d4a45f3c4be09452c4677ffcec47825a 451 SUPERFAMILY SSF51556 56 377 2.25E-67 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_25070 d4a45f3c4be09452c4677ffcec47825a 451 Gene3D G3DSA:2.30.40.10 7 446 1.4E-113 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_25070 d4a45f3c4be09452c4677ffcec47825a 451 Pfam PF01979 Amidohydrolase family 53 429 1.7E-14 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_25070 d4a45f3c4be09452c4677ffcec47825a 451 Gene3D G3DSA:3.20.20.140 56 417 1.4E-113 T 11-10-2018 APT56_25070 d4a45f3c4be09452c4677ffcec47825a 451 SUPERFAMILY SSF51338 8 447 3.21E-25 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_08990 525a7ebeb24b41ac12ee52f14d6c9e66 118 Pfam PF03960 ArsC family 41 114 4.4E-11 T 11-10-2018 IPR006660 Arsenate reductase-like APT56_08990 525a7ebeb24b41ac12ee52f14d6c9e66 118 SUPERFAMILY SSF52833 4 116 7.48E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_08990 525a7ebeb24b41ac12ee52f14d6c9e66 118 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 5 114 6.9E-27 T 11-10-2018 IPR006504 Transcriptional regulator Spx/MgsR APT56_08990 525a7ebeb24b41ac12ee52f14d6c9e66 118 Gene3D G3DSA:3.40.30.10 3 118 7.1E-35 T 11-10-2018 APT56_27660 ba39f5ae2407dc2a479e543bf5fec41e 130 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27660 ba39f5ae2407dc2a479e543bf5fec41e 130 SUPERFAMILY SSF64263 1 119 3.92E-50 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27660 ba39f5ae2407dc2a479e543bf5fec41e 130 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 1.7E-46 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27660 ba39f5ae2407dc2a479e543bf5fec41e 130 Pfam PF01196 Ribosomal protein L17 20 116 5.6E-35 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27660 ba39f5ae2407dc2a479e543bf5fec41e 130 Gene3D G3DSA:3.90.1030.10 1 116 1.9E-47 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27660 ba39f5ae2407dc2a479e543bf5fec41e 130 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.876 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_26080 8ad39be7b4ba1d8e2b93d5de4d4a0031 509 Gene3D G3DSA:1.20.1720.10 13 247 1.2E-40 T 11-10-2018 APT56_26080 8ad39be7b4ba1d8e2b93d5de4d4a0031 509 SUPERFAMILY SSF103473 11 495 8.89E-57 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_26080 8ad39be7b4ba1d8e2b93d5de4d4a0031 509 Pfam PF07690 Major Facilitator Superfamily 16 406 3.6E-46 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_26080 8ad39be7b4ba1d8e2b93d5de4d4a0031 509 ProSitePatterns PS00216 Sugar transport proteins signature 1. 66 82 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_26080 8ad39be7b4ba1d8e2b93d5de4d4a0031 509 Gene3D G3DSA:1.20.1250.20 259 431 1.1E-12 T 11-10-2018 APT56_13005 5058c8a263b46adc15575482df232726 270 Gene3D G3DSA:3.40.50.300 7 222 1.2E-58 T 11-10-2018 APT56_13005 5058c8a263b46adc15575482df232726 270 SMART SM00382 35 218 1.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_13005 5058c8a263b46adc15575482df232726 270 Pfam PF00005 ABC transporter 27 168 3.6E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13005 5058c8a263b46adc15575482df232726 270 SUPERFAMILY SSF52540 9 236 5.19E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17250 831a7872a1c66594bc921cb532959d4a 328 Gene3D G3DSA:3.40.190.10 129 252 5.5E-108 T 11-10-2018 APT56_17250 831a7872a1c66594bc921cb532959d4a 328 Gene3D G3DSA:3.40.190.150 31 317 5.5E-108 T 11-10-2018 APT56_17250 831a7872a1c66594bc921cb532959d4a 328 PIRSF PIRSF017082 1 326 9.4E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17250 831a7872a1c66594bc921cb532959d4a 328 SUPERFAMILY SSF53850 112 288 1.3E-8 T 11-10-2018 APT56_17250 831a7872a1c66594bc921cb532959d4a 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 320 5.9E-79 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 4.7E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 4.7E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 4.7E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 4.7E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 54 69 4.7E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 4.7E-62 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 SMART SM00304 214 266 4.0E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 Pfam PF00672 HAMP domain 214 262 2.6E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 SUPERFAMILY SSF58104 234 518 7.59E-75 T 11-10-2018 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 482 7.1E-54 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 Pfam PF02203 Tar ligand binding domain homologue 1 154 1.2E-20 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 SUPERFAMILY SSF47170 31 176 1.83E-18 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 Gene3D G3DSA:1.10.287.950 214 516 1.3E-89 T 11-10-2018 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 SMART SM00283 267 514 1.4E-95 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_04510 9feb6ca34a982a210d96f56b4db28449 538 Gene3D G3DSA:1.20.120.30 26 192 6.7E-11 T 11-10-2018 APT56_24870 8a447416854fea01bb7c035a6d013ded 113 SUPERFAMILY SSF47413 3 56 3.49E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_24870 8a447416854fea01bb7c035a6d013ded 113 Gene3D G3DSA:1.10.260.40 2 54 8.5E-14 T 11-10-2018 APT56_24870 8a447416854fea01bb7c035a6d013ded 113 Pfam PF01381 Helix-turn-helix 3 51 1.3E-11 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_24870 8a447416854fea01bb7c035a6d013ded 113 SMART SM00530 1 51 2.0E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_16650 8628f2edc40c880c8d07103fe9e90f72 302 Gene3D G3DSA:1.10.10.60 176 285 1.7E-24 T 11-10-2018 APT56_16650 8628f2edc40c880c8d07103fe9e90f72 302 SUPERFAMILY SSF46689 233 286 1.08E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_16650 8628f2edc40c880c8d07103fe9e90f72 302 Pfam PF06719 AraC-type transcriptional regulator N-terminus 19 168 6.4E-46 T 11-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal APT56_16650 8628f2edc40c880c8d07103fe9e90f72 302 SUPERFAMILY SSF46689 180 231 4.09E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_16650 8628f2edc40c880c8d07103fe9e90f72 302 SMART SM00342 197 280 3.7E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_16650 8628f2edc40c880c8d07103fe9e90f72 302 Pfam PF12833 Helix-turn-helix domain 203 278 7.1E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_17150 fcb8f41ecff95208b1f548dfd4bd992e 433 SUPERFAMILY SSF55205 1 429 2.62E-92 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 APT56_17150 fcb8f41ecff95208b1f548dfd4bd992e 433 Gene3D G3DSA:3.65.10.10 6 427 4.3E-110 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APT56_17150 fcb8f41ecff95208b1f548dfd4bd992e 433 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 420 1.1E-53 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 APT56_17150 fcb8f41ecff95208b1f548dfd4bd992e 433 Gene3D G3DSA:3.65.10.10 21 232 4.3E-110 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 SUPERFAMILY SSF47384 140 217 4.32E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 264 371 1.8E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 Gene3D G3DSA:1.10.287.130 141 220 2.8E-15 T 11-10-2018 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 SMART SM00387 263 373 2.3E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 SMART SM00448 13 128 2.3E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 Pfam PF00512 His Kinase A (phospho-acceptor) domain 158 218 8.6E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 SUPERFAMILY SSF52172 12 148 7.12E-32 T 11-10-2018 IPR011006 CheY-like superfamily APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 370 5.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 328 5.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 352 5.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 SMART SM00388 154 219 1.4E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 Gene3D G3DSA:3.40.50.2300 3 137 3.4E-31 T 11-10-2018 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 Pfam PF00072 Response regulator receiver domain 16 127 1.1E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 Gene3D G3DSA:3.30.565.10 227 373 1.2E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_24105 27d1798bac464a16e902fe42dc9a4c6e 378 SUPERFAMILY SSF55874 209 374 3.93E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 SUPERFAMILY SSF81442 53 570 4.84E-178 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 290 344 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 Gene3D G3DSA:1.20.210.10 19 575 8.7E-191 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 66 514 1.9E-136 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 12 656 0.0 T 11-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 208 226 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 358 379 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 471 492 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 176 188 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 288 309 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 134 158 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 421 440 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 57 82 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 107 130 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 334 349 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 393 411 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23655 552d4eb74f6bd010155349adb2632a0a 667 PRINTS PR01165 Cytochrome c oxidase subunit I signature 237 256 1.0E-94 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_02765 9dea9c5cc4a8c7901c7b1b2c8d18e2e5 229 SUPERFAMILY SSF55920 18 222 6.8E-23 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APT56_02765 9dea9c5cc4a8c7901c7b1b2c8d18e2e5 229 Gene3D G3DSA:3.90.230.10 17 222 2.2E-12 T 11-10-2018 APT56_02765 9dea9c5cc4a8c7901c7b1b2c8d18e2e5 229 Pfam PF00557 Metallopeptidase family M24 21 220 3.3E-12 T 11-10-2018 IPR000994 Peptidase M24 APT56_22725 01c2f7720cb3f7391b54e1fe9c393198 351 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 4 347 45.515 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT56_22725 01c2f7720cb3f7391b54e1fe9c393198 351 Gene3D G3DSA:2.40.10.240 66 161 1.5E-110 T 11-10-2018 APT56_22725 01c2f7720cb3f7391b54e1fe9c393198 351 Pfam PF02547 Queuosine biosynthesis protein 6 346 3.6E-130 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT56_22725 01c2f7720cb3f7391b54e1fe9c393198 351 SUPERFAMILY SSF111337 5 346 1.96E-129 T 11-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT56_22725 01c2f7720cb3f7391b54e1fe9c393198 351 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 5 346 1.1E-130 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APT56_22725 01c2f7720cb3f7391b54e1fe9c393198 351 Gene3D G3DSA:3.40.1780.10 17 346 1.5E-110 T 11-10-2018 APT56_02280 cf18bf0db52cddfb674563b506d7248c 323 Gene3D G3DSA:3.40.630.10 24 321 3.3E-49 T 11-10-2018 APT56_02280 cf18bf0db52cddfb674563b506d7248c 323 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 41 192 1.5E-11 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 APT56_02280 cf18bf0db52cddfb674563b506d7248c 323 SUPERFAMILY SSF53187 16 321 4.96E-51 T 11-10-2018 APT56_13660 23e5e51069aa3060f0fb4953b7f45250 705 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 119 618 5.8E-84 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APT56_13660 23e5e51069aa3060f0fb4953b7f45250 705 SUPERFAMILY SSF51445 141 698 1.49E-122 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APT56_13660 23e5e51069aa3060f0fb4953b7f45250 705 Gene3D G3DSA:3.20.20.80 150 693 2.9E-118 T 11-10-2018 APT56_13660 23e5e51069aa3060f0fb4953b7f45250 705 Pfam PF02446 4-alpha-glucanotransferase 173 678 5.7E-101 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APT56_03120 c9f3f616364add073145acdf5bf606ee 203 Gene3D G3DSA:3.40.50.850 2 202 1.6E-44 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_03120 c9f3f616364add073145acdf5bf606ee 203 SUPERFAMILY SSF52499 3 196 4.06E-43 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_03120 c9f3f616364add073145acdf5bf606ee 203 Pfam PF00857 Isochorismatase family 7 187 5.0E-35 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 3.5E-138 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 SUPERFAMILY SSF81442 43 558 3.01E-179 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 11-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 Gene3D G3DSA:1.20.210.10 31 564 2.9E-194 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23325 bc94c25ab5d594767292ef42c9a05dcf 658 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 7.1E-98 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_18770 994c5bafb6c0a9959f7be6ae480e859f 316 SUPERFAMILY SSF51556 3 312 1.64E-85 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_18770 994c5bafb6c0a9959f7be6ae480e859f 316 Pfam PF00962 Adenosine/AMP deaminase 8 311 1.1E-71 T 11-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 APT56_18770 994c5bafb6c0a9959f7be6ae480e859f 316 Hamap MF_01962 Adenine deaminase. 4 316 83.232 T 11-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 APT56_18770 994c5bafb6c0a9959f7be6ae480e859f 316 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 8 312 4.7E-107 T 11-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 APT56_18770 994c5bafb6c0a9959f7be6ae480e859f 316 Gene3D G3DSA:3.20.20.140 2 316 6.1E-101 T 11-10-2018 APT56_06580 bbd802171a9bebd7d588bf428e3ef81a 387 Gene3D G3DSA:3.40.50.2300 28 367 2.8E-116 T 11-10-2018 APT56_06580 bbd802171a9bebd7d588bf428e3ef81a 387 Pfam PF13458 Periplasmic binding protein 25 379 1.7E-49 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_06580 bbd802171a9bebd7d588bf428e3ef81a 387 Gene3D G3DSA:3.40.50.2300 143 376 2.8E-116 T 11-10-2018 APT56_06580 bbd802171a9bebd7d588bf428e3ef81a 387 SUPERFAMILY SSF53822 26 383 1.04E-74 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_21365 a09a039c4c57e7c928ace568cf4982b6 321 SUPERFAMILY SSF53850 111 283 1.01E-10 T 11-10-2018 APT56_21365 a09a039c4c57e7c928ace568cf4982b6 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 317 8.4E-92 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21365 a09a039c4c57e7c928ace568cf4982b6 321 Gene3D G3DSA:3.40.190.10 123 246 5.2E-117 T 11-10-2018 APT56_21365 a09a039c4c57e7c928ace568cf4982b6 321 Gene3D G3DSA:3.40.190.150 26 311 5.2E-117 T 11-10-2018 APT56_21365 a09a039c4c57e7c928ace568cf4982b6 321 PIRSF PIRSF017082 1 320 1.0E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21995 69737cf3450e71251df037425598ae09 264 Gene3D G3DSA:1.10.3720.10 56 252 4.8E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21995 69737cf3450e71251df037425598ae09 264 SUPERFAMILY SSF161098 59 243 1.31E-31 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21995 69737cf3450e71251df037425598ae09 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 251 4.2E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_07835 bd7b058f96c4f87823fca51b81c8d1dd 327 Pfam PF02401 LytB protein 14 290 3.5E-93 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 APT56_07835 bd7b058f96c4f87823fca51b81c8d1dd 327 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 14 292 9.0E-101 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 APT56_07835 bd7b058f96c4f87823fca51b81c8d1dd 327 Gene3D G3DSA:3.40.1010.20 108 204 1.2E-113 T 11-10-2018 APT56_07835 bd7b058f96c4f87823fca51b81c8d1dd 327 Gene3D G3DSA:3.40.50.11270 23 107 1.2E-113 T 11-10-2018 APT56_07835 bd7b058f96c4f87823fca51b81c8d1dd 327 Gene3D G3DSA:3.40.1010.20 17 288 1.2E-113 T 11-10-2018 APT56_07835 bd7b058f96c4f87823fca51b81c8d1dd 327 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 12 294 38.114 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 APT56_23875 ecf2848bfe9ffb0f41a9d5384fc3ec80 149 SUPERFAMILY SSF55729 1 142 2.79E-25 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_23875 ecf2848bfe9ffb0f41a9d5384fc3ec80 149 Gene3D G3DSA:3.40.630.30 1 146 3.6E-38 T 11-10-2018 APT56_23875 ecf2848bfe9ffb0f41a9d5384fc3ec80 149 Pfam PF13673 Acetyltransferase (GNAT) domain 56 136 7.1E-15 T 11-10-2018 IPR000182 GNAT domain APT56_26900 1a2352d6f8456f391ccf079bf44baa89 444 Gene3D G3DSA:3.40.50.2300 41 366 5.2E-73 T 11-10-2018 APT56_26900 1a2352d6f8456f391ccf079bf44baa89 444 Pfam PF13458 Periplasmic binding protein 32 404 1.3E-76 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_26900 1a2352d6f8456f391ccf079bf44baa89 444 SUPERFAMILY SSF53822 34 410 5.72E-46 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_26900 1a2352d6f8456f391ccf079bf44baa89 444 Gene3D G3DSA:3.40.50.2300 152 294 5.2E-73 T 11-10-2018 APT56_08780 e81bb0dd1696fd6b75a88b948858766e 265 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 187 262 1.2E-20 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 APT56_08780 e81bb0dd1696fd6b75a88b948858766e 265 Gene3D G3DSA:3.30.1150.10 167 263 9.5E-18 T 11-10-2018 APT56_08780 e81bb0dd1696fd6b75a88b948858766e 265 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 187 263 1.0E-21 T 11-10-2018 IPR006260 TonB/TolA, C-terminal APT56_08780 e81bb0dd1696fd6b75a88b948858766e 265 SUPERFAMILY SSF74653 184 261 1.23E-19 T 11-10-2018 APT56_08780 e81bb0dd1696fd6b75a88b948858766e 265 PRINTS PR01374 Gram-negative bacterial tonB protein signature 120 130 1.8E-8 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 APT56_08780 e81bb0dd1696fd6b75a88b948858766e 265 PRINTS PR01374 Gram-negative bacterial tonB protein signature 181 202 1.8E-8 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 APT56_08780 e81bb0dd1696fd6b75a88b948858766e 265 PRINTS PR01374 Gram-negative bacterial tonB protein signature 202 220 1.8E-8 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 APT56_11505 03849ea21e12ccfdb659c6b4af7a63c7 234 Gene3D G3DSA:2.40.30.20 1 88 2.2E-26 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_11505 03849ea21e12ccfdb659c6b4af7a63c7 234 Gene3D G3DSA:2.40.30.20 103 206 2.1E-26 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APT56_11505 03849ea21e12ccfdb659c6b4af7a63c7 234 SUPERFAMILY SSF63380 1 89 3.4E-21 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_11505 03849ea21e12ccfdb659c6b4af7a63c7 234 Pfam PF00677 Lumazine binding domain 101 186 5.6E-21 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_11505 03849ea21e12ccfdb659c6b4af7a63c7 234 Pfam PF00677 Lumazine binding domain 3 88 2.8E-17 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_11505 03849ea21e12ccfdb659c6b4af7a63c7 234 PIRSF PIRSF000498 1 213 2.9E-57 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_11505 03849ea21e12ccfdb659c6b4af7a63c7 234 SUPERFAMILY SSF63380 94 201 1.53E-26 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APT56_11505 03849ea21e12ccfdb659c6b4af7a63c7 234 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 5.5E-56 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_19370 87f30ef90c2d2089d01399a34b33f000 156 SUPERFAMILY SSF54292 3 86 2.36E-25 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_19370 87f30ef90c2d2089d01399a34b33f000 156 Pfam PF01799 [2Fe-2S] binding domain 72 145 2.3E-27 T 11-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 APT56_19370 87f30ef90c2d2089d01399a34b33f000 156 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APT56_19370 87f30ef90c2d2089d01399a34b33f000 156 Gene3D G3DSA:3.10.20.30 1 75 1.3E-25 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_19370 87f30ef90c2d2089d01399a34b33f000 156 SUPERFAMILY SSF47741 83 151 2.22E-29 T 11-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily APT56_19370 87f30ef90c2d2089d01399a34b33f000 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 62 1.9E-7 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_19370 87f30ef90c2d2089d01399a34b33f000 156 Gene3D G3DSA:1.10.150.120 78 155 1.0E-25 T 11-10-2018 APT56_05245 fc9a4789761637482b6b8e825309fec5 447 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 435 3.8E-96 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APT56_05245 fc9a4789761637482b6b8e825309fec5 447 PIRSF PIRSF006446 1 441 6.5E-95 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APT56_18920 6d5e57baafb37445a2ff8e1f3c5e44b0 148 SUPERFAMILY SSF55961 2 146 1.33E-43 T 11-10-2018 APT56_18920 6d5e57baafb37445a2ff8e1f3c5e44b0 148 Gene3D G3DSA:3.30.530.20 3 147 1.3E-38 T 11-10-2018 IPR023393 START-like domain superfamily APT56_18920 6d5e57baafb37445a2ff8e1f3c5e44b0 148 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 14 143 4.1E-28 T 11-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like APT56_16365 08e0066fb54a1c22f2c88e0a91064f3c 510 Pfam PF07690 Major Facilitator Superfamily 24 413 3.1E-46 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_16365 08e0066fb54a1c22f2c88e0a91064f3c 510 PRINTS PR01036 Tetracycline resistance protein TetB signature 81 103 4.8E-6 T 11-10-2018 APT56_16365 08e0066fb54a1c22f2c88e0a91064f3c 510 PRINTS PR01036 Tetracycline resistance protein TetB signature 307 331 4.8E-6 T 11-10-2018 APT56_16365 08e0066fb54a1c22f2c88e0a91064f3c 510 PRINTS PR01036 Tetracycline resistance protein TetB signature 404 423 4.8E-6 T 11-10-2018 APT56_16365 08e0066fb54a1c22f2c88e0a91064f3c 510 PRINTS PR01036 Tetracycline resistance protein TetB signature 143 167 4.8E-6 T 11-10-2018 APT56_16365 08e0066fb54a1c22f2c88e0a91064f3c 510 SUPERFAMILY SSF103473 11 501 8.37E-61 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_16365 08e0066fb54a1c22f2c88e0a91064f3c 510 Gene3D G3DSA:1.20.1720.10 18 251 2.9E-38 T 11-10-2018 APT56_16365 08e0066fb54a1c22f2c88e0a91064f3c 510 Gene3D G3DSA:1.20.1250.20 273 499 4.9E-19 T 11-10-2018 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 Pfam PF02203 Tar ligand binding domain homologue 1 169 2.3E-21 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 SMART SM00304 216 268 4.3E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 Pfam PF00672 HAMP domain 216 264 4.0E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 484 1.3E-55 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 SMART SM00283 269 516 1.4E-93 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 SUPERFAMILY SSF47170 27 177 6.8E-6 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily APT56_17280 5739980b6d2524de6c063dea652c1bed 541 SUPERFAMILY SSF58104 236 520 2.49E-74 T 11-10-2018 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 Gene3D G3DSA:1.10.287.950 216 518 3.4E-93 T 11-10-2018 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 61 76 3.5E-63 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 3.5E-63 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 3.5E-63 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 3.5E-63 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 3.5E-63 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_17280 5739980b6d2524de6c063dea652c1bed 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 3.5E-63 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_24200 08b65d5a160990f5064bfb0255860f7c 301 Gene3D G3DSA:3.40.190.10 91 293 6.9E-64 T 11-10-2018 APT56_24200 08b65d5a160990f5064bfb0255860f7c 301 SUPERFAMILY SSF53850 90 298 2.95E-44 T 11-10-2018 APT56_24200 08b65d5a160990f5064bfb0255860f7c 301 Pfam PF03466 LysR substrate binding domain 88 295 3.8E-42 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_24200 08b65d5a160990f5064bfb0255860f7c 301 SUPERFAMILY SSF46785 4 84 3.92E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_24200 08b65d5a160990f5064bfb0255860f7c 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.5E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_24200 08b65d5a160990f5064bfb0255860f7c 301 Gene3D G3DSA:1.10.10.10 3 88 2.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24200 08b65d5a160990f5064bfb0255860f7c 301 Gene3D G3DSA:3.40.190.10 163 266 6.9E-64 T 11-10-2018 APT56_20910 82780375f12b3f177c228ad4577188a4 307 Pfam PF03466 LysR substrate binding domain 95 294 2.8E-18 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_20910 82780375f12b3f177c228ad4577188a4 307 SUPERFAMILY SSF46785 1 77 4.68E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20910 82780375f12b3f177c228ad4577188a4 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.3E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20910 82780375f12b3f177c228ad4577188a4 307 Gene3D G3DSA:3.40.190.10 168 267 4.4E-52 T 11-10-2018 APT56_20910 82780375f12b3f177c228ad4577188a4 307 Gene3D G3DSA:1.10.10.10 1 83 4.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20910 82780375f12b3f177c228ad4577188a4 307 Gene3D G3DSA:3.40.190.10 93 291 4.4E-52 T 11-10-2018 APT56_20910 82780375f12b3f177c228ad4577188a4 307 SUPERFAMILY SSF53850 92 294 1.27E-34 T 11-10-2018 APT56_10835 1a3f751ad2dad5c50862e651cbb90869 263 Gene3D G3DSA:3.90.226.10 4 204 2.7E-67 T 11-10-2018 APT56_10835 1a3f751ad2dad5c50862e651cbb90869 263 Gene3D G3DSA:1.10.12.10 205 263 5.0E-20 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_10835 1a3f751ad2dad5c50862e651cbb90869 263 SUPERFAMILY SSF52096 4 261 7.91E-81 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_10835 1a3f751ad2dad5c50862e651cbb90869 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 261 2.4E-59 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_26350 9ce2a4f42c43c481f588f1387ca758a3 187 Gene3D G3DSA:3.30.1360.200 33 172 1.0E-15 T 11-10-2018 APT56_12935 096b58ac033792a67aa75fac336bbc00 174 Gene3D G3DSA:3.40.50.300 6 158 8.3E-55 T 11-10-2018 APT56_12935 096b58ac033792a67aa75fac336bbc00 174 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 4 159 2.1E-45 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 APT56_12935 096b58ac033792a67aa75fac336bbc00 174 Gene3D G3DSA:2.20.25.120 48 80 8.3E-55 T 11-10-2018 APT56_12935 096b58ac033792a67aa75fac336bbc00 174 SUPERFAMILY SSF52540 3 160 1.58E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_12935 096b58ac033792a67aa75fac336bbc00 174 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 4 136 6.2E-49 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 APT56_12185 061628b7ea9483f7f5ad55ac51cac418 138 SUPERFAMILY SSF51182 7 134 1.63E-29 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_12185 061628b7ea9483f7f5ad55ac51cac418 138 Pfam PF07883 Cupin domain 49 116 2.2E-18 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_12185 061628b7ea9483f7f5ad55ac51cac418 138 Gene3D G3DSA:2.60.120.10 11 130 7.0E-24 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_23565 0496ce5f3a32ac92154875b0bb35b3e4 209 Pfam PF10387 Protein of unknown function (DUF2442) 14 62 8.7E-6 T 11-10-2018 IPR018841 Protein of unknown function DUF2442 APT56_23565 0496ce5f3a32ac92154875b0bb35b3e4 209 Pfam PF14300 Domain of unknown function (DUF4375) 97 209 1.3E-17 T 11-10-2018 IPR025402 Domain of unknown function DUF4375 APT56_02075 3103805a5bd214dae08f4054b46d34f3 338 Gene3D G3DSA:3.40.50.620 30 281 2.0E-47 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_02075 3103805a5bd214dae08f4054b46d34f3 338 Pfam PF01171 PP-loop family 66 228 1.3E-14 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 APT56_02075 3103805a5bd214dae08f4054b46d34f3 338 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 20 295 55.827 T 11-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 APT56_02075 3103805a5bd214dae08f4054b46d34f3 338 SUPERFAMILY SSF52402 41 260 5.66E-54 T 11-10-2018 APT56_10345 c0d315bc00454772e9e55cbb8b7d582f 317 SUPERFAMILY SSF53187 16 313 1.19E-49 T 11-10-2018 APT56_10345 c0d315bc00454772e9e55cbb8b7d582f 317 Gene3D G3DSA:3.40.630.10 13 317 1.4E-54 T 11-10-2018 APT56_10345 c0d315bc00454772e9e55cbb8b7d582f 317 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 41 251 1.5E-12 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 APT56_14745 e9c41be1635c43e494bb5114460174f1 452 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 8 350 1.2E-120 T 11-10-2018 IPR010839 Acyclic terpene utilisation APT56_24560 1559c82652170f580f815111ab0e142f 304 SUPERFAMILY SSF69593 16 291 3.01E-29 T 11-10-2018 APT56_24560 1559c82652170f580f815111ab0e142f 304 Pfam PF01553 Acyltransferase 89 230 3.4E-13 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APT56_24560 1559c82652170f580f815111ab0e142f 304 SMART SM00563 89 231 8.8E-18 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 SUPERFAMILY SSF53244 310 452 1.31E-36 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 452 1.6E-200 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 453 57.459 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 Pfam PF08245 Mur ligase middle domain 108 291 3.4E-19 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 390 5.6E-11 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 Gene3D G3DSA:3.40.1190.10 91 313 4.1E-55 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 Gene3D G3DSA:3.40.50.720 1 90 1.7E-34 T 11-10-2018 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 SUPERFAMILY SSF53623 98 308 1.31E-46 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 SUPERFAMILY SSF51984 1 89 6.02E-19 T 11-10-2018 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 Gene3D G3DSA:3.90.190.20 314 454 3.5E-28 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_03280 c1fd0e3cad61fc98cce35b0408ea4f1e 456 Pfam PF01225 Mur ligase family, catalytic domain 2 97 3.8E-16 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APT56_00570 29435904031db98996c5ead9cc854c49 150 Pfam PF12680 SnoaL-like domain 35 132 5.3E-12 T 11-10-2018 IPR037401 SnoaL-like domain APT56_00570 29435904031db98996c5ead9cc854c49 150 SUPERFAMILY SSF54427 28 140 8.38E-25 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_00570 29435904031db98996c5ead9cc854c49 150 Gene3D G3DSA:3.10.450.50 23 150 9.6E-40 T 11-10-2018 APT56_10720 03b2c66c1d8d349806bbc16de8ab2ef0 152 SUPERFAMILY SSF46785 7 144 1.31E-39 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10720 03b2c66c1d8d349806bbc16de8ab2ef0 152 Gene3D G3DSA:1.10.10.10 2 152 6.1E-44 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_10720 03b2c66c1d8d349806bbc16de8ab2ef0 152 Pfam PF01638 HxlR-like helix-turn-helix 21 104 1.0E-18 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type APT56_25795 fced2d9d0bf8f1c9916349db90bab818 163 Pfam PF05229 Spore Coat Protein U domain 17 160 1.1E-28 T 11-10-2018 IPR007893 Spore coat protein U APT56_25795 fced2d9d0bf8f1c9916349db90bab818 163 SMART SM00972 105 160 5.7E-16 T 11-10-2018 IPR007893 Spore coat protein U APT56_26840 5403cde739df91a59efe440b12865fae 313 Gene3D G3DSA:3.40.190.10 110 294 4.6E-47 T 11-10-2018 APT56_26840 5403cde739df91a59efe440b12865fae 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 74 7.6E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_26840 5403cde739df91a59efe440b12865fae 313 SUPERFAMILY SSF53850 102 301 3.26E-35 T 11-10-2018 APT56_26840 5403cde739df91a59efe440b12865fae 313 SUPERFAMILY SSF46785 12 90 8.71E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26840 5403cde739df91a59efe440b12865fae 313 Gene3D G3DSA:1.10.10.10 14 101 3.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26840 5403cde739df91a59efe440b12865fae 313 Pfam PF03466 LysR substrate binding domain 102 298 4.9E-30 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_26840 5403cde739df91a59efe440b12865fae 313 Gene3D G3DSA:3.40.190.10 170 267 4.6E-47 T 11-10-2018 APT56_23415 d5b28a3ee23951e3f7b35ced6b8214e0 119 SUPERFAMILY SSF81901 28 104 3.4E-7 T 11-10-2018 APT56_23415 d5b28a3ee23951e3f7b35ced6b8214e0 119 Gene3D G3DSA:1.25.40.10 17 108 1.5E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_05655 41fcf0054cacb20542b9fd4aee902712 418 Gene3D G3DSA:3.40.718.10 1 418 9.1E-184 T 11-10-2018 APT56_05655 41fcf0054cacb20542b9fd4aee902712 418 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 418 2.7E-217 T 11-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 APT56_05655 41fcf0054cacb20542b9fd4aee902712 418 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 31 412 1.2E-111 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT56_05655 41fcf0054cacb20542b9fd4aee902712 418 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 305 324 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 APT56_05655 41fcf0054cacb20542b9fd4aee902712 418 SMART SM01329 30 414 1.5E-163 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT56_05655 41fcf0054cacb20542b9fd4aee902712 418 SUPERFAMILY SSF53659 4 418 1.25E-140 T 11-10-2018 APT56_00370 b84e8e2bde0cc66188c46746d8af1ca9 94 Gene3D G3DSA:3.30.70.100 1 93 6.5E-27 T 11-10-2018 APT56_00370 b84e8e2bde0cc66188c46746d8af1ca9 94 Pfam PF00708 Acylphosphatase 9 92 3.5E-23 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT56_00370 b84e8e2bde0cc66188c46746d8af1ca9 94 SUPERFAMILY SSF54975 4 92 1.0E-24 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT56_00370 b84e8e2bde0cc66188c46746d8af1ca9 94 PRINTS PR00112 Acylphosphatase signature 8 23 2.6E-6 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT56_00370 b84e8e2bde0cc66188c46746d8af1ca9 94 PRINTS PR00112 Acylphosphatase signature 29 54 2.6E-6 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT56_00370 b84e8e2bde0cc66188c46746d8af1ca9 94 ProSitePatterns PS00151 Acylphosphatase signature 2. 37 53 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APT56_07045 3afccebc4a03d4a08a99492a6cad7438 300 PIRSF PIRSF015853 1 220 1.9E-87 T 11-10-2018 IPR007035 Peptidase M55, D-aminopeptidase APT56_07045 3afccebc4a03d4a08a99492a6cad7438 300 PIRSF PIRSF015853 226 300 2.2E-13 T 11-10-2018 IPR007035 Peptidase M55, D-aminopeptidase APT56_07045 3afccebc4a03d4a08a99492a6cad7438 300 Gene3D G3DSA:3.40.50.10780 1 212 4.0E-76 T 11-10-2018 IPR027476 D-aminopeptidase, N-terminal APT56_07045 3afccebc4a03d4a08a99492a6cad7438 300 Pfam PF04951 D-aminopeptidase 1 290 1.7E-94 T 11-10-2018 IPR007035 Peptidase M55, D-aminopeptidase APT56_07045 3afccebc4a03d4a08a99492a6cad7438 300 Gene3D G3DSA:3.30.1360.130 118 133 4.0E-76 T 11-10-2018 APT56_07045 3afccebc4a03d4a08a99492a6cad7438 300 SUPERFAMILY SSF63992 1 300 8.37E-98 T 11-10-2018 IPR036177 Peptidase M55, D-aminopeptidase superfamily APT56_06685 a3adfaabaa7a27e4828043da3ea48183 277 Gene3D G3DSA:1.10.472.150 23 147 1.9E-42 T 11-10-2018 APT56_06685 a3adfaabaa7a27e4828043da3ea48183 277 Pfam PF06167 Glucose-regulated metallo-peptidase M90 17 269 1.1E-76 T 11-10-2018 IPR010384 MtfA family APT56_06685 a3adfaabaa7a27e4828043da3ea48183 277 SUPERFAMILY SSF55486 44 271 1.81E-37 T 11-10-2018 APT56_06685 a3adfaabaa7a27e4828043da3ea48183 277 Gene3D G3DSA:3.40.390.10 148 277 1.3E-34 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 APT56_12960 65995c60fc3aad34820a18e9cb80fef2 144 SUPERFAMILY SSF55718 33 133 1.11E-15 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily APT56_12960 65995c60fc3aad34820a18e9cb80fef2 144 Pfam PF02036 SCP-2 sterol transfer family 47 126 2.4E-9 T 11-10-2018 IPR003033 SCP2 sterol-binding domain APT56_09690 2543548b2fb326227071c84fca43429a 437 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 35 286 5.4E-72 T 11-10-2018 IPR017039 Virulence factor BrkB APT56_09690 2543548b2fb326227071c84fca43429a 437 Pfam PF03631 Virulence factor BrkB 41 286 2.6E-57 T 11-10-2018 IPR017039 Virulence factor BrkB APT56_09690 2543548b2fb326227071c84fca43429a 437 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 26 318 22.834 T 11-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial APT56_19290 af37da7469997ab4cc672649cfef4ac5 294 SUPERFAMILY SSF53850 83 288 1.99E-44 T 11-10-2018 APT56_19290 af37da7469997ab4cc672649cfef4ac5 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 57 2.6E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_19290 af37da7469997ab4cc672649cfef4ac5 294 Gene3D G3DSA:1.10.10.10 1 83 4.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19290 af37da7469997ab4cc672649cfef4ac5 294 Gene3D G3DSA:3.40.190.10 85 283 5.5E-61 T 11-10-2018 APT56_19290 af37da7469997ab4cc672649cfef4ac5 294 Pfam PF03466 LysR substrate binding domain 82 286 6.0E-43 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_19290 af37da7469997ab4cc672649cfef4ac5 294 Gene3D G3DSA:3.40.190.10 157 257 5.5E-61 T 11-10-2018 APT56_19290 af37da7469997ab4cc672649cfef4ac5 294 SUPERFAMILY SSF46785 2 106 1.87E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 Pfam PF00155 Aminotransferase class I and II 171 447 1.3E-22 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 3.4E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 3.4E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 SUPERFAMILY SSF53383 130 487 1.28E-78 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 SMART SM00345 26 85 3.8E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 Gene3D G3DSA:3.40.640.10 124 481 4.7E-108 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 85 1.0E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 SUPERFAMILY SSF46785 16 87 2.0E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_19460 411b4055725602db4ea0e1dc3bc6e1d1 500 Gene3D G3DSA:1.10.10.10 13 86 9.9E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06975 f744a4111d48316003255eb063bcf577 372 SUPERFAMILY SSF48264 9 339 3.01E-24 T 11-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT56_06975 f744a4111d48316003255eb063bcf577 372 Gene3D G3DSA:1.10.630.10 2 353 3.1E-23 T 11-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 APT56_09875 c35b20db71abf65c5dbb56ca91c409df 426 PIRSF PIRSF006066 1 426 2.5E-142 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_09875 c35b20db71abf65c5dbb56ca91c409df 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 420 1.7E-141 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_09875 c35b20db71abf65c5dbb56ca91c409df 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 417 5.2E-113 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_08890 6be84f4239923909798149874c95e614 96 Gene3D G3DSA:3.30.70.2340 1 96 1.5E-35 T 11-10-2018 APT56_08890 6be84f4239923909798149874c95e614 96 Pfam PF12112 Protein of unknown function (DUF3579) 5 93 5.3E-38 T 11-10-2018 IPR021969 Protein of unknown function DUF3579 APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 Pfam PF03466 LysR substrate binding domain 89 269 1.7E-20 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 SUPERFAMILY SSF46785 5 112 1.77E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 Gene3D G3DSA:3.40.190.10 162 255 5.9E-42 T 11-10-2018 APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 Gene3D G3DSA:3.40.190.10 96 261 5.9E-42 T 11-10-2018 APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 SUPERFAMILY SSF53850 89 281 1.81E-20 T 11-10-2018 APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 5.0E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_03585 a5c11860d99be0988235dfe1a78314b8 285 Gene3D G3DSA:1.10.10.10 6 95 1.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04340 e80d2341d891bad62fe6c91875b6cac4 359 Gene3D G3DSA:3.40.50.2000 162 339 7.1E-109 T 11-10-2018 APT56_04340 e80d2341d891bad62fe6c91875b6cac4 359 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 355 34.453 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04340 e80d2341d891bad62fe6c91875b6cac4 359 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 344 8.0E-35 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 APT56_04340 e80d2341d891bad62fe6c91875b6cac4 359 Gene3D G3DSA:3.40.50.2000 9 345 7.1E-109 T 11-10-2018 APT56_04340 e80d2341d891bad62fe6c91875b6cac4 359 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 8 145 1.1E-34 T 11-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04340 e80d2341d891bad62fe6c91875b6cac4 359 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 3 350 5.5E-99 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04340 e80d2341d891bad62fe6c91875b6cac4 359 SUPERFAMILY SSF53756 7 355 9.42E-118 T 11-10-2018 APT56_20590 d6e2c3b0e1616f6047cc6bfc67a1c2c0 828 SUPERFAMILY SSF141729 22 144 1.96E-23 T 11-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 APT56_20590 d6e2c3b0e1616f6047cc6bfc67a1c2c0 828 Gene3D G3DSA:3.10.20.410 21 145 1.3E-19 T 11-10-2018 APT56_20590 d6e2c3b0e1616f6047cc6bfc67a1c2c0 828 Pfam PF13954 PapC N-terminal domain 23 167 4.6E-34 T 11-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 APT56_20590 d6e2c3b0e1616f6047cc6bfc67a1c2c0 828 Gene3D G3DSA:2.60.40.3110 257 345 4.5E-28 T 11-10-2018 APT56_20590 d6e2c3b0e1616f6047cc6bfc67a1c2c0 828 Pfam PF00577 Outer membrane usher protein 185 741 9.1E-160 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 APT56_20590 d6e2c3b0e1616f6047cc6bfc67a1c2c0 828 Gene3D G3DSA:2.60.40.2610 656 747 2.1E-13 T 11-10-2018 APT56_20590 d6e2c3b0e1616f6047cc6bfc67a1c2c0 828 Pfam PF13953 PapC C-terminal domain 753 811 5.8E-10 T 11-10-2018 IPR025949 PapC-like, C-terminal domain APT56_20590 d6e2c3b0e1616f6047cc6bfc67a1c2c0 828 Gene3D G3DSA:2.60.40.2070 751 828 6.9E-17 T 11-10-2018 APT56_21540 161f35274ac5ab6db8a9d1f433e25232 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 6 30 6.7E-5 T 11-10-2018 APT56_21540 161f35274ac5ab6db8a9d1f433e25232 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 66 88 6.7E-5 T 11-10-2018 APT56_21540 161f35274ac5ab6db8a9d1f433e25232 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 128 152 6.7E-5 T 11-10-2018 APT56_21540 161f35274ac5ab6db8a9d1f433e25232 445 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 4 408 1.4E-73 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 APT56_21540 161f35274ac5ab6db8a9d1f433e25232 445 Gene3D G3DSA:1.20.1250.20 242 444 2.6E-17 T 11-10-2018 APT56_21540 161f35274ac5ab6db8a9d1f433e25232 445 Gene3D G3DSA:1.20.1720.10 4 217 3.9E-48 T 11-10-2018 APT56_21540 161f35274ac5ab6db8a9d1f433e25232 445 SUPERFAMILY SSF103473 4 444 5.62E-60 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_21540 161f35274ac5ab6db8a9d1f433e25232 445 Pfam PF07690 Major Facilitator Superfamily 7 399 1.6E-45 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_27060 0cb9a455231edb8e6a8575d317c0047b 287 Gene3D G3DSA:3.60.20.10 2 229 2.0E-25 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_27060 0cb9a455231edb8e6a8575d317c0047b 287 SUPERFAMILY SSF56235 2 240 1.68E-34 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_27060 0cb9a455231edb8e6a8575d317c0047b 287 Pfam PF00227 Proteasome subunit 87 183 7.5E-6 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 APT56_27060 0cb9a455231edb8e6a8575d317c0047b 287 PIRSF PIRSF009120 1 248 9.5E-112 T 11-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 APT56_02150 74fda38d25c2cb7619e7575c3d3fa90c 293 ProSitePatterns PS00449 ATP synthase a subunit signature. 216 225 - T 11-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02150 74fda38d25c2cb7619e7575c3d3fa90c 293 Pfam PF00119 ATP synthase A chain 43 286 5.6E-56 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02150 74fda38d25c2cb7619e7575c3d3fa90c 293 Hamap MF_01393 ATP synthase subunit a [atpB]. 32 293 14.135 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02150 74fda38d25c2cb7619e7575c3d3fa90c 293 SUPERFAMILY SSF81336 96 286 5.62E-37 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02150 74fda38d25c2cb7619e7575c3d3fa90c 293 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 33 288 5.3E-40 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_02150 74fda38d25c2cb7619e7575c3d3fa90c 293 Gene3D G3DSA:1.20.120.220 93 293 9.6E-50 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APT56_06020 e86845aae295bc0fdc42e708261afe64 248 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 10 240 2.3E-59 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_06020 e86845aae295bc0fdc42e708261afe64 248 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 7 248 58.86 T 11-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_06020 e86845aae295bc0fdc42e708261afe64 248 ProSitePatterns PS00171 Triosephosphate isomerase active site. 168 178 - T 11-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_06020 e86845aae295bc0fdc42e708261afe64 248 Gene3D G3DSA:3.20.20.70 1 248 2.4E-95 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_06020 e86845aae295bc0fdc42e708261afe64 248 Pfam PF00121 Triosephosphate isomerase 10 245 2.1E-84 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_06020 e86845aae295bc0fdc42e708261afe64 248 SUPERFAMILY SSF51351 5 246 9.69E-86 T 11-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APT56_10160 fe472ae91e48550006d897452ca5bb10 360 PIRSF PIRSF029215 1 355 1.5E-52 T 11-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 APT56_10160 fe472ae91e48550006d897452ca5bb10 360 Pfam PF09979 Uncharacterized protein conserved in bacteria (DUF2213) 14 159 8.2E-36 T 11-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 APT56_16370 a8f20c55d85b28f4f6139632a1dfa378 155 SUPERFAMILY SSF46785 11 151 1.43E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16370 a8f20c55d85b28f4f6139632a1dfa378 155 SMART SM00347 38 138 1.0E-14 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_16370 a8f20c55d85b28f4f6139632a1dfa378 155 Gene3D G3DSA:1.10.10.10 2 151 7.8E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_16370 a8f20c55d85b28f4f6139632a1dfa378 155 Pfam PF01047 MarR family 45 103 7.5E-12 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_11085 056a37cf077276dcdbc9b090cfff4147 320 PIRSF PIRSF000105 9 312 1.8E-69 T 11-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 APT56_11085 056a37cf077276dcdbc9b090cfff4147 320 SUPERFAMILY SSF48179 189 294 4.0E-22 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_11085 056a37cf077276dcdbc9b090cfff4147 320 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 288 7.3E-18 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_11085 056a37cf077276dcdbc9b090cfff4147 320 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 187 211 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_11085 056a37cf077276dcdbc9b090cfff4147 320 Gene3D G3DSA:1.10.1040.10 193 310 1.8E-32 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_11085 056a37cf077276dcdbc9b090cfff4147 320 Gene3D G3DSA:3.40.50.720 3 192 9.3E-48 T 11-10-2018 APT56_11085 056a37cf077276dcdbc9b090cfff4147 320 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 17 186 9.2E-42 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_11085 056a37cf077276dcdbc9b090cfff4147 320 SUPERFAMILY SSF51735 15 185 1.14E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_12555 91dac71457de6d18f0f048538d063a99 381 Pfam PF07005 Putative sugar-binding N-terminal domain 12 220 8.1E-31 T 11-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain APT56_12555 91dac71457de6d18f0f048538d063a99 381 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 293 371 1.4E-12 T 11-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain APT56_12555 91dac71457de6d18f0f048538d063a99 381 Gene3D G3DSA:3.40.980.20 281 378 1.5E-14 T 11-10-2018 APT56_12555 91dac71457de6d18f0f048538d063a99 381 Gene3D G3DSA:3.40.50.10840 11 227 6.9E-38 T 11-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily APT56_12555 91dac71457de6d18f0f048538d063a99 381 SUPERFAMILY SSF142764 12 378 2.48E-63 T 11-10-2018 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 Pfam PF00355 Rieske [2Fe-2S] domain 42 126 1.8E-19 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 197 434 1.2E-13 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 78 98 4.1E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 146 172 4.1E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 57 72 4.1E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 188 210 4.1E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 27 52 4.1E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 100 120 4.1E-34 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 Gene3D G3DSA:3.90.380.10 20 433 2.4E-100 T 11-10-2018 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 SUPERFAMILY SSF55961 162 436 7.3E-57 T 11-10-2018 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 SUPERFAMILY SSF50022 10 161 3.27E-42 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_05115 05dc4f3d5cb6eac68433cd18e89ad3da 437 Gene3D G3DSA:2.102.10.10 40 171 2.4E-100 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_21195 2a296a01cf31996802fa484489d35db5 495 Gene3D G3DSA:2.20.200.10 123 376 2.1E-144 T 11-10-2018 APT56_21195 2a296a01cf31996802fa484489d35db5 495 Gene3D G3DSA:1.20.1600.10 77 488 2.1E-144 T 11-10-2018 APT56_21195 2a296a01cf31996802fa484489d35db5 495 PIRSF PIRSF001892 4 492 2.6E-59 T 11-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 APT56_21195 2a296a01cf31996802fa484489d35db5 495 SUPERFAMILY SSF56954 3 490 2.75E-117 T 11-10-2018 APT56_21195 2a296a01cf31996802fa484489d35db5 495 Pfam PF02321 Outer membrane efflux protein 86 276 6.1E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_21195 2a296a01cf31996802fa484489d35db5 495 Pfam PF02321 Outer membrane efflux protein 305 485 1.6E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_21195 2a296a01cf31996802fa484489d35db5 495 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 487 4.4E-125 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_12865 cf06dce6651a2de862bb1cb4e4079ca2 76 SUPERFAMILY SSF82866 3 65 1.57E-9 T 11-10-2018 APT56_12865 cf06dce6651a2de862bb1cb4e4079ca2 76 Pfam PF00873 AcrB/AcrD/AcrF family 2 61 9.8E-16 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APT56_12865 cf06dce6651a2de862bb1cb4e4079ca2 76 Gene3D G3DSA:1.20.1640.10 1 64 6.7E-14 T 11-10-2018 APT56_25730 c0371b7b8f48dd065067ffa77f55b6f6 591 Gene3D G3DSA:1.10.3720.10 335 589 9.9E-49 T 11-10-2018 IPR035906 MetI-like superfamily APT56_25730 c0371b7b8f48dd065067ffa77f55b6f6 591 Gene3D G3DSA:1.10.3720.10 17 286 3.3E-56 T 11-10-2018 IPR035906 MetI-like superfamily APT56_25730 c0371b7b8f48dd065067ffa77f55b6f6 591 SUPERFAMILY SSF161098 338 589 6.17E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_25730 c0371b7b8f48dd065067ffa77f55b6f6 591 SUPERFAMILY SSF161098 14 277 2.71E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_25730 c0371b7b8f48dd065067ffa77f55b6f6 591 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 274 7.2E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_25730 c0371b7b8f48dd065067ffa77f55b6f6 591 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 410 587 1.2E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_11815 0cc7fe620c93899849276a0e5d13a32d 688 Pfam PF01432 Peptidase family M3 224 684 5.5E-126 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 APT56_11815 0cc7fe620c93899849276a0e5d13a32d 688 Gene3D G3DSA:1.10.1370.10 142 608 3.8E-236 T 11-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 APT56_11815 0cc7fe620c93899849276a0e5d13a32d 688 Gene3D G3DSA:1.10.1370.40 15 682 3.8E-236 T 11-10-2018 APT56_11815 0cc7fe620c93899849276a0e5d13a32d 688 SUPERFAMILY SSF55486 4 684 1.34E-174 T 11-10-2018 APT56_24615 59000e895260994202dc1d24e0a834cc 471 Gene3D G3DSA:3.30.465.10 93 214 8.6E-46 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APT56_24615 59000e895260994202dc1d24e0a834cc 471 Pfam PF02913 FAD linked oxidases, C-terminal domain 216 468 2.8E-53 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APT56_24615 59000e895260994202dc1d24e0a834cc 471 Gene3D G3DSA:3.30.43.10 1 91 4.2E-24 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 APT56_24615 59000e895260994202dc1d24e0a834cc 471 Gene3D G3DSA:3.30.70.2740 342 428 2.0E-27 T 11-10-2018 APT56_24615 59000e895260994202dc1d24e0a834cc 471 Gene3D G3DSA:3.30.70.2190 215 340 8.2E-34 T 11-10-2018 APT56_24615 59000e895260994202dc1d24e0a834cc 471 Gene3D G3DSA:1.10.45.10 429 469 3.2E-20 T 11-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 APT56_24615 59000e895260994202dc1d24e0a834cc 471 SUPERFAMILY SSF56176 3 215 1.01E-77 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_24615 59000e895260994202dc1d24e0a834cc 471 Pfam PF01565 FAD binding domain 38 175 4.2E-37 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APT56_24615 59000e895260994202dc1d24e0a834cc 471 SUPERFAMILY SSF55103 218 469 5.72E-58 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APT56_06860 7016e0b4d4d6dde981f420d60a66022d 365 SUPERFAMILY SSF53686 54 362 2.49E-59 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_06860 7016e0b4d4d6dde981f420d60a66022d 365 Gene3D G3DSA:3.40.50.1100 55 362 1.8E-80 T 11-10-2018 APT56_06860 7016e0b4d4d6dde981f420d60a66022d 365 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 60 359 6.3E-61 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_06860 7016e0b4d4d6dde981f420d60a66022d 365 Gene3D G3DSA:3.40.50.1100 97 198 1.8E-80 T 11-10-2018 APT56_12510 16034797a9b131c79cade104dda0eeba 232 Gene3D G3DSA:1.20.1050.10 90 223 1.5E-51 T 11-10-2018 APT56_12510 16034797a9b131c79cade104dda0eeba 232 SUPERFAMILY SSF47616 78 207 1.2E-39 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_12510 16034797a9b131c79cade104dda0eeba 232 SUPERFAMILY SSF52833 1 84 2.98E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_12510 16034797a9b131c79cade104dda0eeba 232 Pfam PF00043 Glutathione S-transferase, C-terminal domain 131 196 9.9E-10 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_12510 16034797a9b131c79cade104dda0eeba 232 Gene3D G3DSA:3.40.30.10 1 89 2.7E-33 T 11-10-2018 APT56_12510 16034797a9b131c79cade104dda0eeba 232 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 81 1.8E-15 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_16885 4a25de9fc1ecb8b3412023b305f6e2a5 264 SUPERFAMILY SSF53850 36 252 1.99E-28 T 11-10-2018 APT56_16885 4a25de9fc1ecb8b3412023b305f6e2a5 264 SMART SM00062 35 254 1.7E-19 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_16885 4a25de9fc1ecb8b3412023b305f6e2a5 264 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 250 6.6E-18 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_16885 4a25de9fc1ecb8b3412023b305f6e2a5 264 Gene3D G3DSA:3.40.190.10 34 246 5.1E-21 T 11-10-2018 APT56_16885 4a25de9fc1ecb8b3412023b305f6e2a5 264 Gene3D G3DSA:3.40.190.10 121 213 5.1E-21 T 11-10-2018 APT56_21305 1dbe712c3b4373e09dde5fb928e2d2e1 324 SUPERFAMILY SSF53850 92 287 7.85E-14 T 11-10-2018 APT56_21305 1dbe712c3b4373e09dde5fb928e2d2e1 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 320 1.1E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21305 1dbe712c3b4373e09dde5fb928e2d2e1 324 PIRSF PIRSF017082 1 323 1.3E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_21305 1dbe712c3b4373e09dde5fb928e2d2e1 324 Gene3D G3DSA:3.40.190.10 125 249 8.2E-113 T 11-10-2018 APT56_21305 1dbe712c3b4373e09dde5fb928e2d2e1 324 Gene3D G3DSA:3.40.190.150 28 314 8.2E-113 T 11-10-2018 APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 Pfam PF07724 AAA domain (Cdc48 subfamily) 190 330 4.0E-39 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 336 405 2.4E-5 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 SMART SM01086 336 430 1.5E-18 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 SUPERFAMILY SSF52540 5 439 6.91E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 55 104 1.4E-6 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 6 444 3.4E-201 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 Gene3D G3DSA:1.10.8.60 336 441 9.2E-36 T 11-10-2018 APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 SMART SM00382 51 333 4.0E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_27240 6d558edcb7616ceabcb63d95711aa628 444 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 3 444 42.382 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 APT56_17300 4bb420b8313f793f8686755eb96b3748 343 Gene3D G3DSA:3.40.190.170 28 341 4.1E-126 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_17300 4bb420b8313f793f8686755eb96b3748 343 PIRSF PIRSF006470 1 340 2.6E-85 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_17300 4bb420b8313f793f8686755eb96b3748 343 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 35 324 7.4E-76 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_17300 4bb420b8313f793f8686755eb96b3748 343 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 276 4.2E-61 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_17300 4bb420b8313f793f8686755eb96b3748 343 SUPERFAMILY SSF53850 74 212 1.41E-5 T 11-10-2018 APT56_17115 87fef6b04c38c61d0b6381bf4123c7b2 249 SMART SM00892 62 242 5.3E-33 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 APT56_17115 87fef6b04c38c61d0b6381bf4123c7b2 249 SUPERFAMILY SSF54060 39 248 2.77E-55 T 11-10-2018 APT56_17115 87fef6b04c38c61d0b6381bf4123c7b2 249 Gene3D G3DSA:3.40.570.10 47 249 8.6E-48 T 11-10-2018 APT56_17115 87fef6b04c38c61d0b6381bf4123c7b2 249 SMART SM00477 63 249 1.8E-18 T 11-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 APT56_17115 87fef6b04c38c61d0b6381bf4123c7b2 249 Pfam PF01223 DNA/RNA non-specific endonuclease 61 216 9.5E-41 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 APT56_06600 76a3d20d828b1f0fd367c7e560122572 135 PIRSF PIRSF021320 4 131 1.8E-36 T 11-10-2018 IPR009326 Protein of unknown function DUF984 APT56_06600 76a3d20d828b1f0fd367c7e560122572 135 SMART SM01022 13 128 6.1E-36 T 11-10-2018 IPR007374 ASCH domain APT56_06600 76a3d20d828b1f0fd367c7e560122572 135 Gene3D G3DSA:3.10.400.10 2 135 4.4E-43 T 11-10-2018 APT56_06600 76a3d20d828b1f0fd367c7e560122572 135 SUPERFAMILY SSF88697 7 130 3.48E-37 T 11-10-2018 IPR015947 PUA-like superfamily APT56_06600 76a3d20d828b1f0fd367c7e560122572 135 Pfam PF04266 ASCH domain 23 128 1.7E-18 T 11-10-2018 IPR007374 ASCH domain APT56_13640 30cd4d06292534245db9a03dad6a345e 328 Pfam PF16220 Domain of unknown function (DUF4880) 24 64 1.4E-8 T 11-10-2018 IPR032623 FecR, N-terminal APT56_13640 30cd4d06292534245db9a03dad6a345e 328 PIRSF PIRSF018266 14 328 8.7E-82 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_13640 30cd4d06292534245db9a03dad6a345e 328 Pfam PF04773 FecR protein 121 213 6.6E-21 T 11-10-2018 IPR006860 FecR protein APT56_13640 30cd4d06292534245db9a03dad6a345e 328 Gene3D G3DSA:2.60.120.1440 115 248 1.8E-26 T 11-10-2018 APT56_22710 5a37a39d8d03a2faeff6a339f457c08b 167 Gene3D G3DSA:2.30.110.10 2 162 7.2E-49 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_22710 5a37a39d8d03a2faeff6a339f457c08b 167 SMART SM00903 16 160 4.4E-50 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_22710 5a37a39d8d03a2faeff6a339f457c08b 167 SUPERFAMILY SSF50475 8 158 1.57E-44 T 11-10-2018 APT56_22710 5a37a39d8d03a2faeff6a339f457c08b 167 Pfam PF01613 Flavin reductase like domain 17 158 3.3E-31 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_26340 dad8437204cd7c82be120b70fc841aa7 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 131 205 8.4E-6 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_26340 dad8437204cd7c82be120b70fc841aa7 220 Gene3D G3DSA:1.10.10.10 113 208 1.3E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26340 dad8437204cd7c82be120b70fc841aa7 220 SUPERFAMILY SSF46894 116 206 1.22E-10 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_26340 dad8437204cd7c82be120b70fc841aa7 220 SMART SM00862 131 205 2.7E-5 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_26340 dad8437204cd7c82be120b70fc841aa7 220 SUPERFAMILY SSF52172 7 105 2.88E-5 T 11-10-2018 IPR011006 CheY-like superfamily APT56_23755 3fd6d211ee2672913d0f77ebb654b734 126 Gene3D G3DSA:2.102.10.10 9 123 8.6E-33 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_23755 3fd6d211ee2672913d0f77ebb654b734 126 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 15 121 1.5E-28 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 APT56_23755 3fd6d211ee2672913d0f77ebb654b734 126 SUPERFAMILY SSF50022 15 124 3.33E-32 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_23755 3fd6d211ee2672913d0f77ebb654b734 126 Pfam PF13806 Rieske-like [2Fe-2S] domain 15 121 2.0E-35 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 APT56_18780 cc50398ad81b2e4886773c540f441b60 316 Gene3D G3DSA:3.40.190.150 22 305 1.4E-94 T 11-10-2018 APT56_18780 cc50398ad81b2e4886773c540f441b60 316 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 41 313 5.1E-67 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18780 cc50398ad81b2e4886773c540f441b60 316 Gene3D G3DSA:3.40.190.10 120 241 1.4E-94 T 11-10-2018 APT56_18780 cc50398ad81b2e4886773c540f441b60 316 PIRSF PIRSF017082 1 316 4.1E-70 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18780 cc50398ad81b2e4886773c540f441b60 316 SUPERFAMILY SSF53850 103 279 2.17E-13 T 11-10-2018 APT56_20365 4c7b8d25be38d993380a42a481e6702d 462 Gene3D G3DSA:3.90.1300.10 4 454 2.9E-123 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_20365 4c7b8d25be38d993380a42a481e6702d 462 Pfam PF01425 Amidase 22 444 1.3E-92 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_20365 4c7b8d25be38d993380a42a481e6702d 462 SUPERFAMILY SSF75304 5 453 7.19E-119 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_20365 4c7b8d25be38d993380a42a481e6702d 462 TIGRFAM TIGR02715 amido_AtzE: amidohydrolase, AtzE family 6 457 3.2E-193 T 11-10-2018 IPR014087 Amidohydrolase, AtzE type KEGG: 00791+3.5.1.84|MetaCyc: PWY-5169 APT56_05075 c27e06814ab263e8d542ef9352bc9131 346 Pfam PF02653 Branched-chain amino acid transport system / permease component 13 330 3.0E-15 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_03310 d8bf6d292f4b40ba97579beb476974e5 470 Pfam PF13719 zinc-ribbon domain 3 38 2.5E-13 T 11-10-2018 IPR011723 Zinc finger/thioredoxin putative APT56_03310 d8bf6d292f4b40ba97579beb476974e5 470 Pfam PF11906 Protein of unknown function (DUF3426) 317 466 2.1E-44 T 11-10-2018 IPR021834 Protein of unknown function DUF3426 APT56_03310 d8bf6d292f4b40ba97579beb476974e5 470 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 4 39 2.9E-13 T 11-10-2018 IPR011723 Zinc finger/thioredoxin putative APT56_22485 1b643479211d3d67692e34d5672d0537 179 Gene3D G3DSA:3.30.530.20 4 178 4.1E-53 T 11-10-2018 IPR023393 START-like domain superfamily APT56_22485 1b643479211d3d67692e34d5672d0537 179 SUPERFAMILY SSF55961 3 175 9.9E-47 T 11-10-2018 APT56_22485 1b643479211d3d67692e34d5672d0537 179 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 20 153 3.2E-20 T 11-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like APT56_24450 52c941ed0b10c40fe871143873f3b075 532 SUPERFAMILY SSF103473 25 431 3.01E-70 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_24450 52c941ed0b10c40fe871143873f3b075 532 Pfam PF07690 Major Facilitator Superfamily 29 421 1.1E-53 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_24450 52c941ed0b10c40fe871143873f3b075 532 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 23 464 1.1E-69 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 APT56_24450 52c941ed0b10c40fe871143873f3b075 532 Gene3D G3DSA:1.20.1720.10 24 258 7.6E-46 T 11-10-2018 APT56_24450 52c941ed0b10c40fe871143873f3b075 532 Gene3D G3DSA:1.20.1250.20 270 444 1.2E-22 T 11-10-2018 APT56_02485 501110c68d28d26ae173f94382228332 335 Gene3D G3DSA:3.30.1370.60 62 301 4.1E-99 T 11-10-2018 APT56_02485 501110c68d28d26ae173f94382228332 335 SUPERFAMILY SSF89733 3 332 1.44E-103 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 APT56_02485 501110c68d28d26ae173f94382228332 335 Gene3D G3DSA:1.10.1530.10 12 328 4.1E-99 T 11-10-2018 APT56_02485 501110c68d28d26ae173f94382228332 335 Pfam PF02615 Malate/L-lactate dehydrogenase 6 328 3.5E-104 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 APT56_02485 501110c68d28d26ae173f94382228332 335 Gene3D G3DSA:3.30.60.50 178 225 4.1E-99 T 11-10-2018 APT56_10235 c93dac68d655fc25a8c9ae6c5a8f5757 232 Gene3D G3DSA:2.40.50.230 20 117 5.6E-12 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily APT56_21190 950a4e7d614fc7400761d4ea303ea8a2 246 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 3 235 1.3E-97 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 APT56_21190 950a4e7d614fc7400761d4ea303ea8a2 246 Gene3D G3DSA:3.20.20.70 1 246 1.9E-101 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_21190 950a4e7d614fc7400761d4ea303ea8a2 246 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 240 124.623 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 APT56_21190 950a4e7d614fc7400761d4ea303ea8a2 246 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 4 236 2.1E-87 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 APT56_21190 950a4e7d614fc7400761d4ea303ea8a2 246 SUPERFAMILY SSF63892 1 238 9.29E-94 T 11-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 APT56_11060 6d1f6f9f9396d0c97535930e16c141cc 223 Gene3D G3DSA:1.20.1280.20 134 221 3.6E-17 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APT56_11060 6d1f6f9f9396d0c97535930e16c141cc 223 SUPERFAMILY SSF89155 16 217 3.92E-39 T 11-10-2018 IPR036411 TorD-like superfamily APT56_11060 6d1f6f9f9396d0c97535930e16c141cc 223 Gene3D G3DSA:1.20.120.1820 10 131 8.9E-25 T 11-10-2018 APT56_11060 6d1f6f9f9396d0c97535930e16c141cc 223 Pfam PF02613 Nitrate reductase delta subunit 65 183 3.7E-25 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone APT56_13305 4a128430be62675167bd2fa957851e07 527 Gene3D G3DSA:3.30.300.30 410 510 1.4E-25 T 11-10-2018 APT56_13305 4a128430be62675167bd2fa957851e07 527 Pfam PF00501 AMP-binding enzyme 11 416 7.5E-71 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_13305 4a128430be62675167bd2fa957851e07 527 SUPERFAMILY SSF56801 4 511 7.85E-121 T 11-10-2018 APT56_13305 4a128430be62675167bd2fa957851e07 527 Gene3D G3DSA:3.40.50.12780 1 409 4.6E-87 T 11-10-2018 APT56_13305 4a128430be62675167bd2fa957851e07 527 ProSitePatterns PS00455 Putative AMP-binding domain signature. 173 184 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_13305 4a128430be62675167bd2fa957851e07 527 Pfam PF13193 AMP-binding enzyme C-terminal domain 425 500 1.4E-14 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_25800 3e2f0a62fad783fdafd909004dd14e2f 190 SMART SM00972 131 187 1.8E-16 T 11-10-2018 IPR007893 Spore coat protein U APT56_25800 3e2f0a62fad783fdafd909004dd14e2f 190 Pfam PF05229 Spore Coat Protein U domain 39 187 8.7E-30 T 11-10-2018 IPR007893 Spore coat protein U APT56_19175 734ecc3d00f7c8fe5c6e0957105aebb2 180 SUPERFAMILY SSF88946 6 92 4.71E-9 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_19175 734ecc3d00f7c8fe5c6e0957105aebb2 180 Pfam PF04542 Sigma-70 region 2 22 77 5.4E-6 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_19175 734ecc3d00f7c8fe5c6e0957105aebb2 180 Pfam PF08281 Sigma-70, region 4 108 160 1.0E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_19175 734ecc3d00f7c8fe5c6e0957105aebb2 180 SUPERFAMILY SSF88659 91 171 1.57E-12 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_19175 734ecc3d00f7c8fe5c6e0957105aebb2 180 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 159 9.6E-20 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_19175 734ecc3d00f7c8fe5c6e0957105aebb2 180 Gene3D G3DSA:1.10.10.10 80 171 8.6E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25850 71666fb422c7b9851c245ac1e8331d19 250 SMART SM00382 30 224 1.7E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_25850 71666fb422c7b9851c245ac1e8331d19 250 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 246 2.1E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_25850 71666fb422c7b9851c245ac1e8331d19 250 Pfam PF00005 ABC transporter 22 177 3.4E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_25850 71666fb422c7b9851c245ac1e8331d19 250 SUPERFAMILY SSF52540 5 246 9.35E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25850 71666fb422c7b9851c245ac1e8331d19 250 Gene3D G3DSA:3.40.50.300 1 247 6.4E-55 T 11-10-2018 APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 Hamap MF_00821 Protein-export protein SecB [secB]. 1 153 30.953 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 Gene3D G3DSA:3.10.420.10 1 166 2.9E-51 T 11-10-2018 IPR035958 SecB-like superfamily APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 15 148 3.9E-43 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 Pfam PF02556 Preprotein translocase subunit SecB 14 151 1.5E-50 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 131 149 1.4E-27 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 105 127 1.4E-27 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 21 38 1.4E-27 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 81 101 1.4E-27 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APT56_26405 f6dea4a5c7f085d41b674a1cb527b999 177 SUPERFAMILY SSF54611 7 149 1.4E-46 T 11-10-2018 IPR035958 SecB-like superfamily APT56_19125 e652d82987e75a4ead04fbe2b7abdbba 356 SUPERFAMILY SSF54534 182 287 1.05E-26 T 11-10-2018 APT56_19125 e652d82987e75a4ead04fbe2b7abdbba 356 Gene3D G3DSA:3.10.50.40 184 287 2.7E-32 T 11-10-2018 APT56_19125 e652d82987e75a4ead04fbe2b7abdbba 356 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 224 245 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 APT56_19125 e652d82987e75a4ead04fbe2b7abdbba 356 Pfam PF00639 PPIC-type PPIASE domain 201 284 1.0E-21 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 APT56_19125 e652d82987e75a4ead04fbe2b7abdbba 356 Gene3D G3DSA:1.10.4030.30 164 300 2.7E-32 T 11-10-2018 APT56_24730 d97578d6b1a58520f55aa987dcb57ea5 521 Gene3D G3DSA:3.40.190.10 184 505 1.2E-93 T 11-10-2018 APT56_24730 d97578d6b1a58520f55aa987dcb57ea5 521 Gene3D G3DSA:3.10.105.10 269 496 1.2E-93 T 11-10-2018 APT56_24730 d97578d6b1a58520f55aa987dcb57ea5 521 Gene3D G3DSA:3.90.76.10 38 183 1.2E-93 T 11-10-2018 APT56_24730 d97578d6b1a58520f55aa987dcb57ea5 521 PIRSF PIRSF002741 17 520 9.1E-65 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_24730 d97578d6b1a58520f55aa987dcb57ea5 521 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 67 443 5.2E-90 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_24730 d97578d6b1a58520f55aa987dcb57ea5 521 SUPERFAMILY SSF53850 23 516 2.17E-104 T 11-10-2018 APT56_04070 3a9a7fd65cdc96cc32bc5d300ae7398e 269 SUPERFAMILY SSF53474 10 268 1.18E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_04070 3a9a7fd65cdc96cc32bc5d300ae7398e 269 Pfam PF12697 Alpha/beta hydrolase family 30 260 4.9E-16 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_04070 3a9a7fd65cdc96cc32bc5d300ae7398e 269 Gene3D G3DSA:3.40.50.1820 8 267 2.8E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_16325 f65b0a8bc24d72269507247ba4029193 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 219 2.0E-21 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_16325 f65b0a8bc24d72269507247ba4029193 398 Gene3D G3DSA:2.40.110.10 124 234 1.0E-37 T 11-10-2018 APT56_16325 f65b0a8bc24d72269507247ba4029193 398 Gene3D G3DSA:1.20.140.10 235 398 3.5E-37 T 11-10-2018 APT56_16325 f65b0a8bc24d72269507247ba4029193 398 Gene3D G3DSA:1.10.540.10 1 120 3.3E-30 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_16325 f65b0a8bc24d72269507247ba4029193 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 395 1.4E-23 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_16325 f65b0a8bc24d72269507247ba4029193 398 SUPERFAMILY SSF47203 231 398 7.96E-25 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_16325 f65b0a8bc24d72269507247ba4029193 398 SUPERFAMILY SSF56645 1 243 1.05E-75 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_16325 f65b0a8bc24d72269507247ba4029193 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 120 4.7E-22 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 Gene3D G3DSA:3.30.420.40 7 173 2.1E-36 T 11-10-2018 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 Gene3D G3DSA:3.30.420.40 397 406 6.3E-17 T 11-10-2018 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 SUPERFAMILY SSF53067 5 172 5.55E-29 T 11-10-2018 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 Gene3D G3DSA:3.30.420.40 174 217 2.1E-36 T 11-10-2018 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 Gene3D G3DSA:3.30.420.40 349 396 6.3E-17 T 11-10-2018 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 SUPERFAMILY SSF53067 175 412 1.3E-32 T 11-10-2018 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 Pfam PF00012 Hsp70 protein 6 226 1.7E-13 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 Pfam PF00012 Hsp70 protein 275 392 4.9E-12 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 PRINTS PR00301 70kDa heat shock protein signature 186 196 2.0E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 PRINTS PR00301 70kDa heat shock protein signature 120 140 2.0E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 PRINTS PR00301 70kDa heat shock protein signature 32 44 2.0E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 PRINTS PR00301 70kDa heat shock protein signature 4 17 2.0E-6 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 Gene3D G3DSA:3.90.640.10 274 348 6.3E-17 T 11-10-2018 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 Gene3D G3DSA:3.90.640.10 218 227 2.1E-36 T 11-10-2018 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 180 193 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_18530 b17da4e1e945305b39be2bbce1419d4a 417 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 370 384 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 7.7E-16 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 108 124 7.7E-16 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 7.7E-16 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 7.7E-16 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 291 9.3E-67 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 SUPERFAMILY SSF51569 4 292 2.41E-84 T 11-10-2018 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 PIRSF PIRSF001365 3 298 4.7E-75 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 SMART SM01130 6 294 3.7E-95 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 Pfam PF00701 Dihydrodipicolinate synthetase family 7 291 8.5E-68 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_25735 04f69cbfe40575bab005c684b5864dbc 300 Gene3D G3DSA:3.20.20.70 3 293 4.3E-89 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_24315 a40d8a86ea1de898dcd1c661a8282c45 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 296 1.1E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_06605 f528416c81ddf8d22354fae8e9fbd2f2 716 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 3 705 5.3E-274 T 11-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_06605 f528416c81ddf8d22354fae8e9fbd2f2 716 Pfam PF05506 Domain of unknown function (DUF756) 515 601 2.1E-23 T 11-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_06605 f528416c81ddf8d22354fae8e9fbd2f2 716 Pfam PF05506 Domain of unknown function (DUF756) 618 691 8.4E-13 T 11-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 APT56_06605 f528416c81ddf8d22354fae8e9fbd2f2 716 Pfam PF04185 Phosphoesterase family 46 445 1.3E-114 T 11-10-2018 IPR007312 Phosphoesterase GO:0016788 APT56_06605 f528416c81ddf8d22354fae8e9fbd2f2 716 Gene3D G3DSA:3.40.720.10 36 216 4.0E-29 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_06605 f528416c81ddf8d22354fae8e9fbd2f2 716 Gene3D G3DSA:3.40.720.10 287 491 1.8E-50 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APT56_06770 d25d911a1cbda825648a36ee6364a58e 60 SUPERFAMILY SSF57829 2 55 9.16E-17 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 APT56_06770 d25d911a1cbda825648a36ee6364a58e 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 4.3E-19 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_06770 d25d911a1cbda825648a36ee6364a58e 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 16.62 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_06770 d25d911a1cbda825648a36ee6364a58e 60 Pfam PF01783 Ribosomal L32p protein family 2 55 1.1E-17 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09965 7767c0b7ca31ba002603205b872b4b06 304 Gene3D G3DSA:3.90.25.10 160 290 6.0E-102 T 11-10-2018 APT56_09965 7767c0b7ca31ba002603205b872b4b06 304 SUPERFAMILY SSF51735 4 296 1.11E-90 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_09965 7767c0b7ca31ba002603205b872b4b06 304 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 4 296 3.5E-94 T 11-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 APT56_09965 7767c0b7ca31ba002603205b872b4b06 304 Gene3D G3DSA:3.40.50.720 5 284 6.0E-102 T 11-10-2018 APT56_09965 7767c0b7ca31ba002603205b872b4b06 304 Pfam PF04321 RmlD substrate binding domain 4 297 5.7E-100 T 11-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 Gene3D G3DSA:1.10.10.10 721 786 4.2E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 Gene3D G3DSA:3.40.50.300 406 703 7.4E-116 T 11-10-2018 APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 31 219 4.3E-44 T 11-10-2018 IPR025199 DNA translocase FtsK, 4TM region APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 SMART SM00382 444 639 0.0059 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 Gene3D G3DSA:3.30.980.40 301 405 2.4E-32 T 11-10-2018 APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 Pfam PF09397 Ftsk gamma domain 727 787 4.7E-27 T 11-10-2018 IPR018541 FtsK gamma domain APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 SUPERFAMILY SSF46785 725 789 1.05E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 SUPERFAMILY SSF52540 426 689 5.31E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 SMART SM00843 725 790 7.6E-39 T 11-10-2018 IPR018541 FtsK gamma domain APT56_05740 6b148dd0afb2ed12f732d88e6e2940a9 795 Pfam PF01580 FtsK/SpoIIIE family 409 618 2.4E-64 T 11-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 APT56_09890 7c6f2dbb2b94993a00e8f0868a5677b7 298 SUPERFAMILY SSF103481 203 295 4.18E-11 T 11-10-2018 APT56_09890 7c6f2dbb2b94993a00e8f0868a5677b7 298 Pfam PF00892 EamA-like transporter family 161 291 5.2E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_09890 7c6f2dbb2b94993a00e8f0868a5677b7 298 Pfam PF00892 EamA-like transporter family 20 152 8.8E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_09890 7c6f2dbb2b94993a00e8f0868a5677b7 298 SUPERFAMILY SSF103481 57 155 1.05E-13 T 11-10-2018 APT56_14790 b5a40cdaf7c72ef5b257567e6933a04c 207 TIGRFAM TIGR03072 release_prfH: putative peptide chain release factor H 2 201 1.8E-91 T 11-10-2018 IPR017509 Putative peptide chain release factor H APT56_14790 b5a40cdaf7c72ef5b257567e6933a04c 207 Pfam PF00472 RF-1 domain 106 190 5.6E-24 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT56_14790 b5a40cdaf7c72ef5b257567e6933a04c 207 Gene3D G3DSA:3.30.160.20 100 177 5.3E-30 T 11-10-2018 APT56_14790 b5a40cdaf7c72ef5b257567e6933a04c 207 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 115 131 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT56_14790 b5a40cdaf7c72ef5b257567e6933a04c 207 Gene3D G3DSA:3.30.70.1660 4 184 5.3E-30 T 11-10-2018 APT56_14790 b5a40cdaf7c72ef5b257567e6933a04c 207 SUPERFAMILY SSF75620 3 196 7.19E-48 T 11-10-2018 APT56_23600 81813efcb68479e790abaf909c24ba97 332 Pfam PF03741 Integral membrane protein TerC family 82 289 5.8E-55 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 APT56_23600 81813efcb68479e790abaf909c24ba97 332 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 16 321 1.5E-122 T 11-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 APT56_16845 bbec36979892588f74b82245008fdedc 523 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 70 91 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site APT56_16845 bbec36979892588f74b82245008fdedc 523 Gene3D G3DSA:3.10.105.10 270 500 7.5E-129 T 11-10-2018 APT56_16845 bbec36979892588f74b82245008fdedc 523 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 64 433 3.1E-90 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_16845 bbec36979892588f74b82245008fdedc 523 Gene3D G3DSA:3.40.190.10 34 269 7.5E-129 T 11-10-2018 APT56_16845 bbec36979892588f74b82245008fdedc 523 PIRSF PIRSF002741 6 520 1.4E-103 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_16845 bbec36979892588f74b82245008fdedc 523 SUPERFAMILY SSF53850 19 504 7.06E-128 T 11-10-2018 APT56_16845 bbec36979892588f74b82245008fdedc 523 Gene3D G3DSA:3.90.76.10 56 166 7.5E-129 T 11-10-2018 APT56_08960 1e25b3fef41d2db220476c36227524d7 141 Gene3D G3DSA:1.10.490.10 13 140 2.8E-43 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 APT56_08960 1e25b3fef41d2db220476c36227524d7 141 SUPERFAMILY SSF46458 18 139 6.12E-36 T 11-10-2018 IPR009050 Globin-like superfamily APT56_08960 1e25b3fef41d2db220476c36227524d7 141 ProSitePatterns PS01213 Protozoan/cyanobacterial globins signature. 67 91 - T 11-10-2018 IPR019795 Globin, bacterial-like, conserved site GO:0015671|GO:0019825 APT56_08960 1e25b3fef41d2db220476c36227524d7 141 Pfam PF01152 Bacterial-like globin 18 137 6.7E-41 T 11-10-2018 IPR001486 Truncated hemoglobin GO:0019825 APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 SUPERFAMILY SSF46785 15 128 2.06E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 Gene3D G3DSA:3.40.190.290 108 312 5.3E-28 T 11-10-2018 APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 79 2.9E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 56 67 8.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 46 8.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 56 8.7E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 Gene3D G3DSA:1.10.10.10 16 98 4.1E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 SUPERFAMILY SSF53850 107 310 3.8E-35 T 11-10-2018 APT56_14555 ba7488d7302031c0d542e1061f32fe4b 317 Pfam PF03466 LysR substrate binding domain 104 307 9.0E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_27815 730e76c0cf123655e2b490103f073b69 263 Pfam PF07650 KH domain 39 110 2.7E-20 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27815 730e76c0cf123655e2b490103f073b69 263 SUPERFAMILY SSF54821 108 206 1.11E-39 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27815 730e76c0cf123655e2b490103f073b69 263 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 11-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27815 730e76c0cf123655e2b490103f073b69 263 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 5.2E-40 T 11-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27815 730e76c0cf123655e2b490103f073b69 263 SMART SM00322 60 125 2.7E-7 T 11-10-2018 IPR004087 K Homology domain GO:0003676 APT56_27815 730e76c0cf123655e2b490103f073b69 263 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 7.9E-92 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 APT56_27815 730e76c0cf123655e2b490103f073b69 263 Gene3D G3DSA:3.30.300.20 17 107 2.9E-28 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_27815 730e76c0cf123655e2b490103f073b69 263 SUPERFAMILY SSF54814 2 106 1.54E-36 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 APT56_27815 730e76c0cf123655e2b490103f073b69 263 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.491 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 APT56_27815 730e76c0cf123655e2b490103f073b69 263 Gene3D G3DSA:3.30.1140.32 108 208 2.5E-44 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_25125 29cd87e97a896e280247c75dc4722e1b 394 Gene3D G3DSA:3.10.310.10 11 387 4.1E-149 T 11-10-2018 APT56_25125 29cd87e97a896e280247c75dc4722e1b 394 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 5 391 7.2E-228 T 11-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 APT56_25125 29cd87e97a896e280247c75dc4722e1b 394 Pfam PF04303 PrpF protein 6 390 4.1E-175 T 11-10-2018 IPR007400 PrpF protein APT56_25125 29cd87e97a896e280247c75dc4722e1b 394 SUPERFAMILY SSF54506 188 390 2.75E-75 T 11-10-2018 APT56_25125 29cd87e97a896e280247c75dc4722e1b 394 SUPERFAMILY SSF54506 2 182 1.1E-70 T 11-10-2018 APT56_25125 29cd87e97a896e280247c75dc4722e1b 394 Gene3D G3DSA:3.10.310.10 181 373 4.1E-149 T 11-10-2018 APT56_08505 58a114b303c650e316a7ba28a4b042cf 230 SUPERFAMILY SSF81342 7 190 7.06E-36 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT56_08505 58a114b303c650e316a7ba28a4b042cf 230 Pfam PF01292 Prokaryotic cytochrome b561 11 180 9.2E-21 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APT56_08505 58a114b303c650e316a7ba28a4b042cf 230 Gene3D G3DSA:1.20.950.20 1 169 5.3E-18 T 11-10-2018 APT56_13755 a7256da643f41a7c8f14e28e6f4497e6 178 Pfam PF13628 Domain of unknown function (DUF4142) 37 171 7.8E-41 T 11-10-2018 IPR025419 Domain of unknown function DUF4142 APT56_13755 a7256da643f41a7c8f14e28e6f4497e6 178 Gene3D G3DSA:1.20.1260.10 35 171 2.7E-5 T 11-10-2018 IPR012347 Ferritin-like APT56_11745 45d5de8edc68b78e47ac401db69c38e3 178 PIRSF PIRSF011484 1 178 5.3E-72 T 11-10-2018 IPR009822 YaeQ APT56_11745 45d5de8edc68b78e47ac401db69c38e3 178 SUPERFAMILY SSF52980 5 177 2.95E-74 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT56_11745 45d5de8edc68b78e47ac401db69c38e3 178 SMART SM01322 1 176 1.8E-122 T 11-10-2018 IPR009822 YaeQ APT56_11745 45d5de8edc68b78e47ac401db69c38e3 178 Gene3D G3DSA:3.10.640.10 1 178 5.8E-81 T 11-10-2018 IPR038590 YaeQ superfamily APT56_11745 45d5de8edc68b78e47ac401db69c38e3 178 Pfam PF07152 YaeQ protein 1 173 1.3E-78 T 11-10-2018 IPR009822 YaeQ APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.0E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.0E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 22 39 1.0E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.0E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.0E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 1.0E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 SUPERFAMILY SSF51735 20 260 4.66E-69 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 Gene3D G3DSA:3.40.50.720 13 264 1.4E-68 T 11-10-2018 APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 29 260 6.4E-53 T 11-10-2018 APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 5.7E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 5.7E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 5.7E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25540 ff7b68d4eb2ff8a89bba91d83ac0545b 272 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_25905 0ea2027529d92783626db49dc44b278d 296 Gene3D G3DSA:3.40.190.290 93 294 1.4E-45 T 11-10-2018 APT56_25905 0ea2027529d92783626db49dc44b278d 296 SUPERFAMILY SSF53850 90 294 1.96E-42 T 11-10-2018 APT56_25905 0ea2027529d92783626db49dc44b278d 296 Pfam PF03466 LysR substrate binding domain 91 292 1.9E-45 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_25905 0ea2027529d92783626db49dc44b278d 296 SUPERFAMILY SSF46785 4 114 8.91E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_25905 0ea2027529d92783626db49dc44b278d 296 Gene3D G3DSA:1.10.10.10 3 89 4.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25905 0ea2027529d92783626db49dc44b278d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 3.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25905 0ea2027529d92783626db49dc44b278d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 3.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25905 0ea2027529d92783626db49dc44b278d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 3.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_25905 0ea2027529d92783626db49dc44b278d 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 5.2E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_19690 38978b828271c763b2181baf0b8d1ea3 302 SUPERFAMILY SSF53850 93 300 1.05E-39 T 11-10-2018 APT56_19690 38978b828271c763b2181baf0b8d1ea3 302 SUPERFAMILY SSF46785 7 91 1.58E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_19690 38978b828271c763b2181baf0b8d1ea3 302 Gene3D G3DSA:1.10.10.10 7 92 3.3E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19690 38978b828271c763b2181baf0b8d1ea3 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.4E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_19690 38978b828271c763b2181baf0b8d1ea3 302 Pfam PF03466 LysR substrate binding domain 92 297 1.4E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_19690 38978b828271c763b2181baf0b8d1ea3 302 Gene3D G3DSA:3.40.190.290 95 296 2.0E-53 T 11-10-2018 APT56_02520 5b9043efe78ac3da4401913cae2be333 204 SUPERFAMILY SSF53335 15 181 6.72E-31 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_02520 5b9043efe78ac3da4401913cae2be333 204 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 14 201 3.8E-89 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 APT56_02520 5b9043efe78ac3da4401913cae2be333 204 Pfam PF07021 Methionine biosynthesis protein MetW 14 200 8.0E-77 T 11-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 APT56_02520 5b9043efe78ac3da4401913cae2be333 204 Gene3D G3DSA:3.40.50.150 8 184 1.5E-25 T 11-10-2018 APT56_21230 ff26262511bd908b140440c0f867e1cf 228 Gene3D G3DSA:3.40.50.300 5 225 4.5E-60 T 11-10-2018 APT56_21230 ff26262511bd908b140440c0f867e1cf 228 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21230 ff26262511bd908b140440c0f867e1cf 228 Pfam PF00005 ABC transporter 26 168 6.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21230 ff26262511bd908b140440c0f867e1cf 228 SUPERFAMILY SSF52540 18 222 2.2E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21230 ff26262511bd908b140440c0f867e1cf 228 SMART SM00382 27 218 1.4E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_09075 59fa5239e0d6a5fa33b25453a49b162c 282 Gene3D G3DSA:3.20.20.370 1 249 4.2E-60 T 11-10-2018 APT56_09075 59fa5239e0d6a5fa33b25453a49b162c 282 SUPERFAMILY SSF88713 22 280 5.84E-37 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_09075 59fa5239e0d6a5fa33b25453a49b162c 282 Pfam PF01522 Polysaccharide deacetylase 56 219 1.5E-32 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT56_26730 1d8f8158aaede5bc3d25dcf0564b0d91 262 Pfam PF03180 NLPA lipoprotein 27 262 2.0E-102 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_26730 1d8f8158aaede5bc3d25dcf0564b0d91 262 PIRSF PIRSF002854 2 262 1.2E-109 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_26730 1d8f8158aaede5bc3d25dcf0564b0d91 262 Gene3D G3DSA:3.40.190.10 29 260 3.7E-105 T 11-10-2018 APT56_26730 1d8f8158aaede5bc3d25dcf0564b0d91 262 Gene3D G3DSA:3.40.190.10 108 212 3.7E-105 T 11-10-2018 APT56_26730 1d8f8158aaede5bc3d25dcf0564b0d91 262 SUPERFAMILY SSF53850 26 262 7.06E-90 T 11-10-2018 APT56_26730 1d8f8158aaede5bc3d25dcf0564b0d91 262 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 21 261 7.1E-79 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_20520 877062b87197d26688b510cfe3d9943a 246 Gene3D G3DSA:1.10.10.10 7 97 2.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20520 877062b87197d26688b510cfe3d9943a 246 Pfam PF12840 Helix-turn-helix domain 13 70 4.8E-11 T 11-10-2018 APT56_20520 877062b87197d26688b510cfe3d9943a 246 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 14 29 3.7E-7 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_20520 877062b87197d26688b510cfe3d9943a 246 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 62 77 3.7E-7 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_20520 877062b87197d26688b510cfe3d9943a 246 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 47 62 3.7E-7 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_20520 877062b87197d26688b510cfe3d9943a 246 SUPERFAMILY SSF46785 6 89 5.96E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20520 877062b87197d26688b510cfe3d9943a 246 SMART SM00418 12 91 3.4E-19 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_27440 54c828f1507fb84b0615062e04111f5d 220 Pfam PF04367 Protein of unknown function (DUF502) 56 161 4.4E-37 T 11-10-2018 IPR007462 Protein of unknown function DUF502 APT56_08390 4008d32da807da37fe5072fa987e62b5 469 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 105 407 1.2E-10 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_08390 4008d32da807da37fe5072fa987e62b5 469 TIGRFAM TIGR00260 thrC: threonine synthase 84 430 1.7E-72 T 11-10-2018 IPR004450 Threonine synthase-like APT56_08390 4008d32da807da37fe5072fa987e62b5 469 Gene3D G3DSA:3.90.1380.10 1 90 2.9E-30 T 11-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily APT56_08390 4008d32da807da37fe5072fa987e62b5 469 SUPERFAMILY SSF53686 1 466 7.13E-154 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_08390 4008d32da807da37fe5072fa987e62b5 469 Gene3D G3DSA:3.40.50.1100 97 435 6.6E-135 T 11-10-2018 APT56_08390 4008d32da807da37fe5072fa987e62b5 469 Gene3D G3DSA:3.40.50.1100 109 448 6.6E-135 T 11-10-2018 APT56_08390 4008d32da807da37fe5072fa987e62b5 469 Pfam PF14821 Threonine synthase N terminus 2 79 1.2E-28 T 11-10-2018 IPR029144 Threonine synthase, N-terminal APT56_16450 4ae514448fa525499f2559d05029d9f1 551 SUPERFAMILY SSF161098 14 262 3.79E-36 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16450 4ae514448fa525499f2559d05029d9f1 551 Gene3D G3DSA:1.10.3720.10 3 274 4.3E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16450 4ae514448fa525499f2559d05029d9f1 551 Gene3D G3DSA:1.10.3720.10 292 549 1.3E-42 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16450 4ae514448fa525499f2559d05029d9f1 551 SUPERFAMILY SSF161098 289 547 5.89E-42 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16450 4ae514448fa525499f2559d05029d9f1 551 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 369 544 5.7E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_16450 4ae514448fa525499f2559d05029d9f1 551 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 266 1.5E-13 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12855 72309d35fc35710775caf9a6f34a3481 474 Pfam PF07687 Peptidase dimerisation domain 203 354 5.1E-11 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_12855 72309d35fc35710775caf9a6f34a3481 474 Gene3D G3DSA:3.30.70.360 205 368 6.8E-85 T 11-10-2018 APT56_12855 72309d35fc35710775caf9a6f34a3481 474 Gene3D G3DSA:3.40.630.10 50 435 6.8E-85 T 11-10-2018 APT56_12855 72309d35fc35710775caf9a6f34a3481 474 SUPERFAMILY SSF53187 19 455 1.41E-48 T 11-10-2018 APT56_12855 72309d35fc35710775caf9a6f34a3481 474 Pfam PF01546 Peptidase family M20/M25/M40 89 450 7.3E-21 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_22620 e3a65653e39b8b4acbd83b43172dd34f 155 Pfam PF01337 Barstar (barnase inhibitor) 43 123 3.9E-21 T 11-10-2018 IPR000468 Barstar (barnase inhibitor) APT56_22620 e3a65653e39b8b4acbd83b43172dd34f 155 SUPERFAMILY SSF52038 41 128 2.35E-18 T 11-10-2018 IPR035905 Barstar-like superfamily APT56_22620 e3a65653e39b8b4acbd83b43172dd34f 155 Gene3D G3DSA:3.30.370.10 41 126 2.4E-9 T 11-10-2018 IPR035905 Barstar-like superfamily APT56_01435 50433c08b014fb3bdebe9fed89600772 296 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 14 291 4.1E-91 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 APT56_01435 50433c08b014fb3bdebe9fed89600772 296 Pfam PF01040 UbiA prenyltransferase family 27 275 8.3E-56 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 APT56_01435 50433c08b014fb3bdebe9fed89600772 296 Gene3D G3DSA:1.10.357.140 18 190 8.1E-14 T 11-10-2018 APT56_01435 50433c08b014fb3bdebe9fed89600772 296 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 11 292 18.929 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 APT56_04370 b199154b7239d8f6a725c9c8012088eb 307 SUPERFAMILY SSF54211 143 281 9.1E-51 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_04370 b199154b7239d8f6a725c9c8012088eb 307 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 283 45.216 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APT56_04370 b199154b7239d8f6a725c9c8012088eb 307 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 279 1.7E-104 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APT56_04370 b199154b7239d8f6a725c9c8012088eb 307 Gene3D G3DSA:3.30.230.20 1 127 2.1E-46 T 11-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APT56_04370 b199154b7239d8f6a725c9c8012088eb 307 SUPERFAMILY SSF54211 3 125 4.32E-41 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_04370 b199154b7239d8f6a725c9c8012088eb 307 Gene3D G3DSA:3.30.1700.10 128 306 8.8E-66 T 11-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APT56_04370 b199154b7239d8f6a725c9c8012088eb 307 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3 301 3.4E-118 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APT56_15720 34939cca4c5ea994910a972885bde237 272 SUPERFAMILY SSF53098 97 255 2.28E-36 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_15720 34939cca4c5ea994910a972885bde237 272 Pfam PF13683 Integrase core domain 188 253 1.8E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APT56_15720 34939cca4c5ea994910a972885bde237 272 Pfam PF13276 HTH-like domain 34 87 1.3E-7 T 11-10-2018 IPR025948 HTH-like domain APT56_15720 34939cca4c5ea994910a972885bde237 272 Gene3D G3DSA:3.30.420.10 101 242 6.4E-18 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_27810 1a70099775a1e6005faf98501a55942d 138 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.5E-41 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27810 1a70099775a1e6005faf98501a55942d 138 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.5E-41 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27810 1a70099775a1e6005faf98501a55942d 138 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.5E-41 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27810 1a70099775a1e6005faf98501a55942d 138 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.5E-41 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27810 1a70099775a1e6005faf98501a55942d 138 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 38.535 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27810 1a70099775a1e6005faf98501a55942d 138 SUPERFAMILY SSF54686 1 134 2.35E-54 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_27810 1a70099775a1e6005faf98501a55942d 138 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.8E-50 T 11-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 APT56_27810 1a70099775a1e6005faf98501a55942d 138 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27810 1a70099775a1e6005faf98501a55942d 138 Gene3D G3DSA:3.90.1170.10 1 137 3.0E-56 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 APT56_27810 1a70099775a1e6005faf98501a55942d 138 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 1.4E-59 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27810 1a70099775a1e6005faf98501a55942d 138 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_26615 7f7a91dc8c1bebafef316abcb35cf2c5 383 PIRSF PIRSF000267 7 381 1.5E-115 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APT56_26615 7f7a91dc8c1bebafef316abcb35cf2c5 383 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 7 376 5.9E-132 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APT56_26615 7f7a91dc8c1bebafef316abcb35cf2c5 383 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 12 367 3.1E-102 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APT56_25255 febb62e6526c009c447b103d04ba0623 192 Gene3D G3DSA:3.40.80.10 9 182 1.2E-54 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APT56_25255 febb62e6526c009c447b103d04ba0623 192 SUPERFAMILY SSF55846 16 180 5.63E-60 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APT56_25255 febb62e6526c009c447b103d04ba0623 192 SMART SM00644 22 170 4.0E-44 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APT56_25255 febb62e6526c009c447b103d04ba0623 192 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 73 171 1.6E-23 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APT56_18775 3d04eaa238d639950258454ccc235d3e 421 SUPERFAMILY SSF53474 5 414 3.75E-87 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18775 3d04eaa238d639950258454ccc235d3e 421 Gene3D G3DSA:3.40.50.1820 318 419 2.2E-11 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18775 3d04eaa238d639950258454ccc235d3e 421 Pfam PF00135 Carboxylesterase family 8 310 4.6E-70 T 11-10-2018 IPR002018 Carboxylesterase, type B APT56_18775 3d04eaa238d639950258454ccc235d3e 421 Gene3D G3DSA:3.40.50.1820 4 317 5.6E-90 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_22510 707118f46f24bf894a6ae660f6a5a5af 215 SMART SM00852 18 168 2.6E-23 T 11-10-2018 IPR001453 MoaB/Mog domain APT56_22510 707118f46f24bf894a6ae660f6a5a5af 215 Pfam PF00994 Probable molybdopterin binding domain 19 161 5.5E-29 T 11-10-2018 IPR001453 MoaB/Mog domain APT56_22510 707118f46f24bf894a6ae660f6a5a5af 215 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 80 93 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 APT56_22510 707118f46f24bf894a6ae660f6a5a5af 215 SUPERFAMILY SSF53218 15 203 7.2E-45 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily APT56_22510 707118f46f24bf894a6ae660f6a5a5af 215 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 17 161 6.5E-34 T 11-10-2018 IPR001453 MoaB/Mog domain APT56_22510 707118f46f24bf894a6ae660f6a5a5af 215 Gene3D G3DSA:3.40.980.10 14 210 8.5E-59 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 5.5E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 5.5E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 5.5E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 5.5E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 219 5.5E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 5.5E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 236 1.7E-47 T 11-10-2018 APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 Gene3D G3DSA:3.40.50.720 3 239 8.1E-65 T 11-10-2018 APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 129 157 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 SUPERFAMILY SSF51735 7 237 5.33E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 7.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 70 81 7.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_25945 056b4cecdb1022731c37e2e97cb3a53d 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 7.7E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_15295 68768144f51fba791d20d5f47c9c2825 328 Gene3D G3DSA:3.40.190.10 129 252 3.4E-116 T 11-10-2018 APT56_15295 68768144f51fba791d20d5f47c9c2825 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 324 2.1E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_15295 68768144f51fba791d20d5f47c9c2825 328 Gene3D G3DSA:3.40.190.150 31 313 3.4E-116 T 11-10-2018 APT56_15295 68768144f51fba791d20d5f47c9c2825 328 SUPERFAMILY SSF53850 116 287 3.47E-10 T 11-10-2018 APT56_15295 68768144f51fba791d20d5f47c9c2825 328 PIRSF PIRSF017082 2 326 2.3E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_05660 819c730a8556e0eaeb825b3a71c4535b 325 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 162 270 1.9E-12 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APT56_05660 819c730a8556e0eaeb825b3a71c4535b 325 SUPERFAMILY SSF53756 24 309 1.15E-30 T 11-10-2018 APT56_05660 819c730a8556e0eaeb825b3a71c4535b 325 Gene3D G3DSA:3.40.50.2000 155 295 1.9E-20 T 11-10-2018 APT56_03275 b70f92b5011f379534f195ca7abd091f 200 SUPERFAMILY SSF53474 2 190 5.77E-17 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_03275 b70f92b5011f379534f195ca7abd091f 200 Gene3D G3DSA:3.40.50.1820 1 194 5.4E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_03275 b70f92b5011f379534f195ca7abd091f 200 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 191 1.1E-48 T 11-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA APT56_26525 16155e0dca2d63b4d4104c23a3ac08f6 371 Pfam PF02481 DNA recombination-mediator protein A 80 288 6.0E-76 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 APT56_26525 16155e0dca2d63b4d4104c23a3ac08f6 371 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 76 297 5.7E-75 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 APT56_26525 16155e0dca2d63b4d4104c23a3ac08f6 371 Gene3D G3DSA:1.10.10.10 298 368 9.0E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26525 16155e0dca2d63b4d4104c23a3ac08f6 371 Gene3D G3DSA:3.40.50.450 2 297 5.2E-106 T 11-10-2018 APT56_26525 16155e0dca2d63b4d4104c23a3ac08f6 371 SUPERFAMILY SSF102405 88 297 6.26E-43 T 11-10-2018 APT56_07440 3c3b8c42831861f6b6ad2011e10ff0ee 137 Gene3D G3DSA:1.10.10.690 1 135 2.8E-34 T 11-10-2018 IPR027405 YidB-like APT56_07440 3c3b8c42831861f6b6ad2011e10ff0ee 137 SUPERFAMILY SSF140804 11 128 4.05E-31 T 11-10-2018 IPR027405 YidB-like APT56_07440 3c3b8c42831861f6b6ad2011e10ff0ee 137 Pfam PF06078 Bacterial protein of unknown function (DUF937) 2 110 5.4E-10 T 11-10-2018 IPR009282 Protein of unknown function DUF937 APT56_01600 6876ef19221bb48320181804ad9ae451 343 Gene3D G3DSA:3.90.550.10 9 233 2.6E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_01600 6876ef19221bb48320181804ad9ae451 343 Pfam PF00535 Glycosyl transferase family 2 21 183 5.4E-33 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_01600 6876ef19221bb48320181804ad9ae451 343 SUPERFAMILY SSF53448 20 250 2.48E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_17880 55282874120acad4338bea458bfcb7b3 129 Pfam PF07007 Lysozyme inhibitor LprI 44 123 4.1E-11 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal APT56_17880 55282874120acad4338bea458bfcb7b3 129 Gene3D G3DSA:1.20.1270.180 29 129 6.3E-11 T 11-10-2018 APT56_22360 164e2fab7f6fb423759a2fc73790eb4d 299 SUPERFAMILY SSF63829 7 293 1.24E-49 T 11-10-2018 APT56_22360 164e2fab7f6fb423759a2fc73790eb4d 299 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 17 270 9.6E-44 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region APT56_22360 164e2fab7f6fb423759a2fc73790eb4d 299 Gene3D G3DSA:2.120.10.30 1 275 7.1E-42 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_25960 b806f7bc559fd63d5dd4ef3283721a56 214 Pfam PF01144 Coenzyme A transferase 8 184 1.3E-36 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_25960 b806f7bc559fd63d5dd4ef3283721a56 214 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 6 210 8.6E-90 T 11-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 APT56_25960 b806f7bc559fd63d5dd4ef3283721a56 214 SMART SM00882 8 205 4.6E-66 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_25960 b806f7bc559fd63d5dd4ef3283721a56 214 SUPERFAMILY SSF100950 6 213 1.26E-65 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_25960 b806f7bc559fd63d5dd4ef3283721a56 214 Gene3D G3DSA:3.40.1080.10 2 214 6.9E-85 T 11-10-2018 APT56_04165 96010239f77b3ee471db5e6371a1fcb5 210 Gene3D G3DSA:3.40.50.360 1 199 3.0E-56 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_04165 96010239f77b3ee471db5e6371a1fcb5 210 Pfam PF02525 Flavodoxin-like fold 1 196 2.9E-46 T 11-10-2018 IPR003680 Flavodoxin-like fold APT56_04165 96010239f77b3ee471db5e6371a1fcb5 210 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 199 30.473 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 APT56_04165 96010239f77b3ee471db5e6371a1fcb5 210 SUPERFAMILY SSF52218 1 198 2.95E-54 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 SUPERFAMILY SSF54373 185 283 2.35E-14 T 11-10-2018 APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 SUPERFAMILY SSF51905 12 366 1.48E-60 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 Pfam PF01494 FAD binding domain 12 325 6.7E-26 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 Gene3D G3DSA:3.50.50.60 13 356 9.6E-116 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 160 175 5.6E-20 T 11-10-2018 APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 356 5.6E-20 T 11-10-2018 APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 306 5.6E-20 T 11-10-2018 APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 5.6E-20 T 11-10-2018 APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 306 322 5.6E-20 T 11-10-2018 APT56_02825 59453ea1e200f8c31dbb0c1cb53a0b29 406 Gene3D G3DSA:3.30.9.30 45 364 9.6E-116 T 11-10-2018 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 Pfam PF13328 HD domain 36 199 4.7E-48 T 11-10-2018 IPR003607 HD/PDEase domain APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 Gene3D G3DSA:1.10.3210.10 15 214 2.6E-42 T 11-10-2018 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 Pfam PF13291 ACT domain 687 761 2.5E-15 T 11-10-2018 IPR002912 ACT domain APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 Pfam PF04607 Region found in RelA / SpoT proteins 258 367 3.6E-37 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 SUPERFAMILY SSF55021 686 760 9.87E-14 T 11-10-2018 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 SMART SM00954 258 368 1.6E-62 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 SUPERFAMILY SSF109604 17 213 1.04E-41 T 11-10-2018 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 SUPERFAMILY SSF81271 434 495 1.61E-18 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 Gene3D G3DSA:3.30.70.260 686 762 8.6E-18 T 11-10-2018 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 Gene3D G3DSA:3.30.460.10 216 348 7.6E-50 T 11-10-2018 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 Gene3D G3DSA:3.10.20.30 432 500 6.1E-28 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 Pfam PF02824 TGS domain 436 494 1.0E-20 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 APT56_06690 d80c0e845c3b7b3837665112e97d55a3 762 SUPERFAMILY SSF81301 215 393 2.13E-62 T 11-10-2018 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 SMART SM00388 255 324 1.0E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 475 2.2E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 SUPERFAMILY SSF55874 325 474 4.98E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 Pfam PF00512 His Kinase A (phospho-acceptor) domain 256 319 4.2E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 Gene3D G3DSA:1.10.287.130 231 319 5.8E-18 T 11-10-2018 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 473 3.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 435 3.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 421 3.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 454 3.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 SUPERFAMILY SSF47384 244 321 3.53E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 Gene3D G3DSA:3.30.565.10 326 478 2.6E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_13265 346d582b9e327891263ecd0f4d815dc1 479 SMART SM00387 367 476 1.6E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_06990 49d3a6233ca7ab9b3bd6fd0c366dae99 149 Gene3D G3DSA:3.10.129.10 6 144 1.3E-34 T 11-10-2018 APT56_06990 49d3a6233ca7ab9b3bd6fd0c366dae99 149 Pfam PF13279 Thioesterase-like superfamily 24 141 4.4E-17 T 11-10-2018 APT56_06990 49d3a6233ca7ab9b3bd6fd0c366dae99 149 SUPERFAMILY SSF54637 16 142 1.5E-30 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_04765 0cda765fc922e5725d2826fcac8dc28c 506 Pfam PF13193 AMP-binding enzyme C-terminal domain 420 495 7.0E-13 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_04765 0cda765fc922e5725d2826fcac8dc28c 506 Gene3D G3DSA:3.30.300.30 405 505 5.1E-26 T 11-10-2018 APT56_04765 0cda765fc922e5725d2826fcac8dc28c 506 SUPERFAMILY SSF56801 7 505 9.81E-137 T 11-10-2018 APT56_04765 0cda765fc922e5725d2826fcac8dc28c 506 Pfam PF00501 AMP-binding enzyme 15 411 5.5E-96 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_04765 0cda765fc922e5725d2826fcac8dc28c 506 ProSitePatterns PS00455 Putative AMP-binding domain signature. 164 175 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_04765 0cda765fc922e5725d2826fcac8dc28c 506 Gene3D G3DSA:3.40.50.12780 1 404 5.0E-104 T 11-10-2018 APT56_20475 15565e8afb9de1a6b25e4b755da69645 374 Pfam PF06804 NlpB/DapX lipoprotein 40 372 5.6E-46 T 11-10-2018 IPR010653 NlpB/DapX lipoprotein APT56_20475 15565e8afb9de1a6b25e4b755da69645 374 Gene3D G3DSA:3.30.310.170 256 374 4.7E-15 T 11-10-2018 APT56_03945 023fd7321e4e8262f0a8c0884f7068d4 350 Pfam PF00535 Glycosyl transferase family 2 40 199 5.7E-33 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_03945 023fd7321e4e8262f0a8c0884f7068d4 350 SUPERFAMILY SSF53448 38 280 3.56E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_03945 023fd7321e4e8262f0a8c0884f7068d4 350 Gene3D G3DSA:3.90.550.10 33 224 6.3E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_20905 d4264d6e4333b6ee1f01fe60354cbde2 464 Pfam PF00155 Aminotransferase class I and II 127 448 1.5E-18 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_20905 d4264d6e4333b6ee1f01fe60354cbde2 464 SUPERFAMILY SSF46785 20 91 3.4E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20905 d4264d6e4333b6ee1f01fe60354cbde2 464 Gene3D G3DSA:3.90.1150.10 116 450 1.3E-57 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_20905 d4264d6e4333b6ee1f01fe60354cbde2 464 SUPERFAMILY SSF53383 95 454 3.34E-66 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_20905 d4264d6e4333b6ee1f01fe60354cbde2 464 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 87 2.3E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20905 d4264d6e4333b6ee1f01fe60354cbde2 464 Gene3D G3DSA:3.40.640.10 136 351 1.3E-57 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_20905 d4264d6e4333b6ee1f01fe60354cbde2 464 SMART SM00345 28 87 1.8E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20905 d4264d6e4333b6ee1f01fe60354cbde2 464 Gene3D G3DSA:1.10.10.10 19 88 2.9E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26740 9ac924ac80b3f3e333452057f9ee6238 248 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 28 210 1.1E-44 T 11-10-2018 IPR010237 Pyrimidine 5-nucleotidase APT56_26740 9ac924ac80b3f3e333452057f9ee6238 248 Pfam PF13419 Haloacid dehalogenase-like hydrolase 30 211 1.7E-10 T 11-10-2018 APT56_26740 9ac924ac80b3f3e333452057f9ee6238 248 SUPERFAMILY SSF56784 27 239 1.46E-32 T 11-10-2018 IPR036412 HAD-like superfamily APT56_26740 9ac924ac80b3f3e333452057f9ee6238 248 Gene3D G3DSA:1.10.150.450 31 100 4.5E-6 T 11-10-2018 APT56_26740 9ac924ac80b3f3e333452057f9ee6238 248 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 29 211 1.5E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_26740 9ac924ac80b3f3e333452057f9ee6238 248 Gene3D G3DSA:3.40.50.1000 101 242 4.1E-22 T 11-10-2018 IPR023214 HAD superfamily APT56_04635 7737196a06dbddb24a17354f1a9792d1 797 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 3 764 19.198 T 11-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 APT56_04635 7737196a06dbddb24a17354f1a9792d1 797 Pfam PF04453 Organic solvent tolerance protein 295 691 4.0E-98 T 11-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 APT56_14235 e1528495d86ff95bde3f488a0d616a3b 525 Pfam PF00571 CBS domain 374 424 3.6E-6 T 11-10-2018 IPR000644 CBS domain APT56_14235 e1528495d86ff95bde3f488a0d616a3b 525 SMART SM01091 438 518 3.1E-17 T 11-10-2018 IPR005170 Transporter-associated domain APT56_14235 e1528495d86ff95bde3f488a0d616a3b 525 Gene3D G3DSA:3.10.580.10 287 437 1.0E-37 T 11-10-2018 APT56_14235 e1528495d86ff95bde3f488a0d616a3b 525 SUPERFAMILY SSF56176 436 521 1.53E-15 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_14235 e1528495d86ff95bde3f488a0d616a3b 525 Pfam PF03741 Integral membrane protein TerC family 17 206 3.8E-49 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 APT56_14235 e1528495d86ff95bde3f488a0d616a3b 525 Gene3D G3DSA:3.30.465.10 438 516 1.7E-19 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APT56_14235 e1528495d86ff95bde3f488a0d616a3b 525 SUPERFAMILY SSF54631 294 426 4.3E-21 T 11-10-2018 APT56_14235 e1528495d86ff95bde3f488a0d616a3b 525 Pfam PF03471 Transporter associated domain 439 515 4.0E-15 T 11-10-2018 IPR005170 Transporter-associated domain APT56_05360 fa5e3596fba1609a8996815c68eb6745 507 Pfam PF01435 Peptidase family M48 82 271 3.7E-33 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT56_05360 fa5e3596fba1609a8996815c68eb6745 507 Gene3D G3DSA:3.30.2010.10 76 161 2.6E-7 T 11-10-2018 APT56_05360 fa5e3596fba1609a8996815c68eb6745 507 SUPERFAMILY SSF48452 325 477 7.59E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_05360 fa5e3596fba1609a8996815c68eb6745 507 Gene3D G3DSA:1.25.40.10 267 485 4.4E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_14025 23b25652d784e9f7e6810eb216fec123 130 Pfam PF01042 Endoribonuclease L-PSP 15 121 1.9E-28 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_14025 23b25652d784e9f7e6810eb216fec123 130 SUPERFAMILY SSF55298 13 124 9.11E-36 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_14025 23b25652d784e9f7e6810eb216fec123 130 Gene3D G3DSA:3.30.1330.40 4 121 1.6E-37 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_09020 5f43ade6bb6073e6a3262418f6a07ebd 226 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 54 217 2.2E-57 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APT56_09020 5f43ade6bb6073e6a3262418f6a07ebd 226 Gene3D G3DSA:3.40.50.1360 8 210 8.3E-71 T 11-10-2018 APT56_09020 5f43ade6bb6073e6a3262418f6a07ebd 226 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 8 219 2.5E-62 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APT56_09020 5f43ade6bb6073e6a3262418f6a07ebd 226 SUPERFAMILY SSF75445 132 203 5.76E-22 T 11-10-2018 APT56_09020 5f43ade6bb6073e6a3262418f6a07ebd 226 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 4 222 32.683 T 11-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APT56_09020 5f43ade6bb6073e6a3262418f6a07ebd 226 Gene3D G3DSA:3.30.70.260 130 201 8.3E-71 T 11-10-2018 APT56_09020 5f43ade6bb6073e6a3262418f6a07ebd 226 SUPERFAMILY SSF100950 4 150 2.51E-41 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 92 112 5.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 144 170 5.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 71 91 5.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 183 205 5.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 19 44 5.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 50 65 5.4E-30 T 11-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 Gene3D G3DSA:2.102.10.10 35 168 3.3E-94 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 SUPERFAMILY SSF55961 169 407 3.69E-51 T 11-10-2018 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 Gene3D G3DSA:3.90.380.10 12 407 3.3E-94 T 11-10-2018 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 SUPERFAMILY SSF50022 7 160 6.02E-45 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 Pfam PF00355 Rieske [2Fe-2S] domain 35 121 2.5E-20 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 78 101 - T 11-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 APT56_05015 f5691e3b13febc9d5deb7bcf2bcca271 411 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 192 408 9.0E-18 T 11-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 APT56_10250 4f1386fdb6328233bcbbefe7c358a27f 221 Pfam PF11041 Protein of unknown function (DUF2612) 12 191 1.1E-38 T 11-10-2018 IPR021283 Protein of unknown function DUF2612 APT56_11570 b924d429e70c22c211ade18cbf4e1d6e 347 Pfam PF02779 Transketolase, pyrimidine binding domain 13 188 1.8E-44 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_11570 b924d429e70c22c211ade18cbf4e1d6e 347 SMART SM00861 14 189 9.9E-66 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APT56_11570 b924d429e70c22c211ade18cbf4e1d6e 347 Gene3D G3DSA:3.40.50.970 10 213 2.1E-90 T 11-10-2018 APT56_11570 b924d429e70c22c211ade18cbf4e1d6e 347 Pfam PF02780 Transketolase, C-terminal domain 222 337 2.1E-37 T 11-10-2018 IPR033248 Transketolase, C-terminal domain APT56_11570 b924d429e70c22c211ade18cbf4e1d6e 347 SUPERFAMILY SSF52518 12 229 3.64E-67 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_11570 b924d429e70c22c211ade18cbf4e1d6e 347 Gene3D G3DSA:3.40.50.920 214 347 2.3E-57 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_11570 b924d429e70c22c211ade18cbf4e1d6e 347 SUPERFAMILY SSF52922 215 345 2.62E-42 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APT56_25750 f83b1c70f7b30effebe5cda792fc703f 370 Pfam PF01594 AI-2E family transporter 14 344 2.7E-39 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 SUPERFAMILY SSF51735 3 244 1.9E-78 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.0E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.0E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 3.0E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 Pfam PF00106 short chain dehydrogenase 4 196 2.4E-62 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 Gene3D G3DSA:3.40.50.720 1 245 2.7E-82 T 11-10-2018 APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 188 5.6E-4 T 11-10-2018 APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 6.0E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 6.0E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 6.0E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 6.0E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 6.0E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 6.0E-45 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_07335 d14d75d6c6d3828571ce6d8d351a80cc 245 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 244 2.3E-118 T 11-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 APT56_13355 c3eed763643f4dcc08488537a08443ac 338 Pfam PF01032 FecCD transport family 30 330 2.8E-67 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APT56_13355 c3eed763643f4dcc08488537a08443ac 338 Gene3D G3DSA:1.10.3470.10 15 336 4.9E-70 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_13355 c3eed763643f4dcc08488537a08443ac 338 SUPERFAMILY SSF81345 8 329 9.02E-57 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_19705 df4ec90cc9cc7d66588da0fbb5b04b5d 244 PIRSF PIRSF006157 1 244 6.1E-82 T 11-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 APT56_19705 df4ec90cc9cc7d66588da0fbb5b04b5d 244 SUPERFAMILY SSF53213 1 243 1.02E-80 T 11-10-2018 APT56_19705 df4ec90cc9cc7d66588da0fbb5b04b5d 244 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 21 243 9.3E-52 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 APT56_19705 df4ec90cc9cc7d66588da0fbb5b04b5d 244 Gene3D G3DSA:3.40.830.10 1 244 1.6E-80 T 11-10-2018 APT56_01220 3624ab0cd53e05d4f8bb9e19143a02fb 363 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 11 361 55.818 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT56_01220 3624ab0cd53e05d4f8bb9e19143a02fb 363 SUPERFAMILY SSF53383 15 361 1.73E-77 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_01220 3624ab0cd53e05d4f8bb9e19143a02fb 363 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 13 360 8.4E-96 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APT56_01220 3624ab0cd53e05d4f8bb9e19143a02fb 363 Gene3D G3DSA:3.40.640.10 53 266 1.5E-111 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_01220 3624ab0cd53e05d4f8bb9e19143a02fb 363 Pfam PF00155 Aminotransferase class I and II 30 356 1.6E-47 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_01220 3624ab0cd53e05d4f8bb9e19143a02fb 363 Gene3D G3DSA:3.90.1150.10 16 356 1.5E-111 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 483 572 2.3E-21 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 Gene3D G3DSA:1.10.1040.50 486 644 4.4E-39 T 11-10-2018 APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 SUPERFAMILY SSF51735 304 480 1.28E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 306 478 1.0E-42 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 SUPERFAMILY SSF48179 482 578 1.11E-26 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 SUPERFAMILY SSF48179 588 639 4.17E-6 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 Gene3D G3DSA:3.90.226.10 6 297 2.7E-69 T 11-10-2018 APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 Gene3D G3DSA:3.40.50.720 298 485 4.4E-49 T 11-10-2018 APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 SUPERFAMILY SSF52096 6 265 5.49E-54 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_20015 3a0a3920c5c141ee779ea65249f38252 644 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 203 1.0E-30 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_03415 e1c2fa1ccc9f503f823f24b386d3d343 230 SUPERFAMILY SSF52499 27 220 2.75E-51 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_03415 e1c2fa1ccc9f503f823f24b386d3d343 230 Gene3D G3DSA:3.40.50.850 7 230 9.4E-57 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_03415 e1c2fa1ccc9f503f823f24b386d3d343 230 Pfam PF00857 Isochorismatase family 29 214 4.6E-37 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_27135 6477c4e7bddf0100ad0957f7bfcfed5b 396 Pfam PF13458 Periplasmic binding protein 32 363 1.8E-58 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_27135 6477c4e7bddf0100ad0957f7bfcfed5b 396 Gene3D G3DSA:3.40.50.2300 34 360 2.1E-77 T 11-10-2018 APT56_27135 6477c4e7bddf0100ad0957f7bfcfed5b 396 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 33 49 3.9E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_27135 6477c4e7bddf0100ad0957f7bfcfed5b 396 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 3.9E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_27135 6477c4e7bddf0100ad0957f7bfcfed5b 396 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 55 71 3.9E-9 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_27135 6477c4e7bddf0100ad0957f7bfcfed5b 396 Gene3D G3DSA:3.40.50.2300 155 283 2.1E-77 T 11-10-2018 APT56_27135 6477c4e7bddf0100ad0957f7bfcfed5b 396 SUPERFAMILY SSF53822 32 386 3.53E-75 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_12995 3f6b95225eb443af6dc3af40d31d54dd 185 Gene3D G3DSA:1.20.1290.10 13 182 3.4E-42 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_12995 3f6b95225eb443af6dc3af40d31d54dd 185 Pfam PF02627 Carboxymuconolactone decarboxylase family 43 118 5.2E-10 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_12995 3f6b95225eb443af6dc3af40d31d54dd 185 SUPERFAMILY SSF69118 1 181 7.85E-47 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_21370 d09fea026cbd85c99ef204fbf2e812ef 445 Gene3D G3DSA:2.40.160.180 39 445 6.4E-132 T 11-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily APT56_21370 d09fea026cbd85c99ef204fbf2e812ef 445 Pfam PF04966 Carbohydrate-selective porin, OprB family 83 445 3.1E-97 T 11-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 APT56_24230 ee99b19a850a7572fb3bf921eaf3d031 1058 SUPERFAMILY SSF48371 492 883 5.76E-8 T 11-10-2018 IPR016024 Armadillo-type fold APT56_24230 ee99b19a850a7572fb3bf921eaf3d031 1058 SUPERFAMILY SSF48371 32 545 5.18E-5 T 11-10-2018 IPR016024 Armadillo-type fold APT56_24880 7c5b84c387a666b9e76ba86ee6269116 403 Gene3D G3DSA:1.10.287.70 135 229 2.7E-17 T 11-10-2018 APT56_24880 7c5b84c387a666b9e76ba86ee6269116 403 Pfam PF07885 Ion channel 155 226 9.5E-16 T 11-10-2018 IPR013099 Potassium channel domain APT56_24880 7c5b84c387a666b9e76ba86ee6269116 403 SUPERFAMILY SSF51735 248 380 6.89E-20 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_24880 7c5b84c387a666b9e76ba86ee6269116 403 Pfam PF02254 TrkA-N domain 251 365 2.6E-16 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT56_24880 7c5b84c387a666b9e76ba86ee6269116 403 SUPERFAMILY SSF81324 129 269 3.66E-22 T 11-10-2018 APT56_24880 7c5b84c387a666b9e76ba86ee6269116 403 Gene3D G3DSA:3.40.50.720 246 394 2.2E-27 T 11-10-2018 APT56_10455 12837f8af8468890a8ed5a798946600c 328 Gene3D G3DSA:1.20.1530.20 5 321 1.6E-31 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APT56_10455 12837f8af8468890a8ed5a798946600c 328 PIRSF PIRSF026166 1 328 3.6E-119 T 11-10-2018 IPR016833 Putative sodium bile acid cotransporter APT56_10455 12837f8af8468890a8ed5a798946600c 328 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 7 314 2.3E-92 T 11-10-2018 IPR016833 Putative sodium bile acid cotransporter APT56_15175 7f04bc8cd79c785433b59bdded2fb61d 252 Pfam PF01975 Survival protein SurE 3 182 5.9E-59 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 APT56_15175 7f04bc8cd79c785433b59bdded2fb61d 252 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 250 38.822 T 11-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 APT56_15175 7f04bc8cd79c785433b59bdded2fb61d 252 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 233 1.2E-63 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 APT56_15175 7f04bc8cd79c785433b59bdded2fb61d 252 SUPERFAMILY SSF64167 1 248 1.83E-84 T 11-10-2018 APT56_15175 7f04bc8cd79c785433b59bdded2fb61d 252 Gene3D G3DSA:3.40.1210.10 1 250 1.5E-92 T 11-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 APT56_20575 a89664991c24ac296535c8576e44b83f 221 SUPERFAMILY SSF52172 1 172 8.75E-35 T 11-10-2018 IPR011006 CheY-like superfamily APT56_20575 a89664991c24ac296535c8576e44b83f 221 Gene3D G3DSA:3.40.50.2300 1 121 1.3E-35 T 11-10-2018 APT56_20575 a89664991c24ac296535c8576e44b83f 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 2.2E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_20575 a89664991c24ac296535c8576e44b83f 221 SMART SM00862 145 216 4.4E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_20575 a89664991c24ac296535c8576e44b83f 221 SMART SM00448 1 112 1.1E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_20575 a89664991c24ac296535c8576e44b83f 221 Gene3D G3DSA:1.10.10.10 122 218 1.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20575 a89664991c24ac296535c8576e44b83f 221 Pfam PF00072 Response regulator receiver domain 3 112 1.1E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 260 5.5E-56 T 11-10-2018 APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 SUPERFAMILY SSF51735 14 262 3.51E-72 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 1.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 1.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 157 1.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 1.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 1.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 1.5E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 Gene3D G3DSA:3.40.50.720 6 263 4.3E-71 T 11-10-2018 APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 4.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 4.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26005 61e4dbdb0f5920a7b34bf483e1df66f6 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 4.0E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04870 274f72c51c2e31a222d48854c31b5817 459 Pfam PF11741 AMIN domain 49 152 7.1E-24 T 11-10-2018 IPR021731 AMIN domain APT56_04870 274f72c51c2e31a222d48854c31b5817 459 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 228 443 6.6E-48 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT56_04870 274f72c51c2e31a222d48854c31b5817 459 SMART SM00646 288 443 2.3E-58 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APT56_04870 274f72c51c2e31a222d48854c31b5817 459 Gene3D G3DSA:3.40.630.40 214 455 1.0E-79 T 11-10-2018 APT56_04870 274f72c51c2e31a222d48854c31b5817 459 SUPERFAMILY SSF53187 226 446 3.14E-53 T 11-10-2018 APT56_04870 274f72c51c2e31a222d48854c31b5817 459 Gene3D G3DSA:2.60.40.3500 38 155 5.5E-33 T 11-10-2018 APT56_17010 439225d2a1540097e5963b66d81fdda5 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 276 282 - T 11-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_17010 439225d2a1540097e5963b66d81fdda5 381 Pfam PF01070 FMN-dependent dehydrogenase 16 379 8.5E-128 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 APT56_17010 439225d2a1540097e5963b66d81fdda5 381 Gene3D G3DSA:3.20.20.70 4 381 2.5E-129 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_17010 439225d2a1540097e5963b66d81fdda5 381 PIRSF PIRSF000138 1 381 9.5E-134 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_17010 439225d2a1540097e5963b66d81fdda5 381 SUPERFAMILY SSF51395 5 379 3.72E-97 T 11-10-2018 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 Gene3D G3DSA:3.40.47.10 139 382 1.6E-134 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 Gene3D G3DSA:3.40.47.10 4 273 1.6E-134 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 ProSitePatterns PS00737 Thiolases signature 2. 336 352 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 Pfam PF02803 Thiolase, C-terminal domain 268 388 5.4E-41 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 388 4.6E-124 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 SUPERFAMILY SSF53901 1 262 1.17E-66 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 Pfam PF00108 Thiolase, N-terminal domain 5 258 1.4E-61 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 SUPERFAMILY SSF53901 268 389 1.36E-40 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_26300 158fb7aafc5bb87eeb7720be7be32341 390 PIRSF PIRSF000429 1 390 1.2E-116 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_06545 7782faeae1b9f4770d14eb870943b01b 258 Gene3D G3DSA:1.10.8.1040 20 78 1.1E-5 T 11-10-2018 APT56_06545 7782faeae1b9f4770d14eb870943b01b 258 SUPERFAMILY SSF54534 100 219 1.11E-30 T 11-10-2018 APT56_06545 7782faeae1b9f4770d14eb870943b01b 258 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 157 178 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 APT56_06545 7782faeae1b9f4770d14eb870943b01b 258 Pfam PF13616 PPIC-type PPIASE domain 119 220 3.6E-25 T 11-10-2018 APT56_06545 7782faeae1b9f4770d14eb870943b01b 258 Gene3D G3DSA:3.10.50.40 124 223 8.4E-33 T 11-10-2018 APT56_14725 fa0b371ef204de07b40e1cda9fa741a1 128 SUPERFAMILY SSF55298 1 128 6.13E-41 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_14725 fa0b371ef204de07b40e1cda9fa741a1 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 127 6.9E-44 T 11-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 APT56_14725 fa0b371ef204de07b40e1cda9fa741a1 128 Gene3D G3DSA:3.30.1330.40 1 128 2.8E-46 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_14725 fa0b371ef204de07b40e1cda9fa741a1 128 Pfam PF01042 Endoribonuclease L-PSP 9 127 4.9E-38 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_11030 210db3e895fed9f208f964482716903f 68 Pfam PF04995 Heme exporter protein D (CcmD) 16 53 2.2E-9 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 APT56_11030 210db3e895fed9f208f964482716903f 68 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 52 8.1E-10 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 APT56_23435 fabbdaad9cdf6c25f2496cbb70e4b98e 295 SUPERFAMILY SSF53850 97 290 3.46E-28 T 11-10-2018 APT56_23435 fabbdaad9cdf6c25f2496cbb70e4b98e 295 Pfam PF03466 LysR substrate binding domain 96 287 4.1E-30 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_23435 fabbdaad9cdf6c25f2496cbb70e4b98e 295 Gene3D G3DSA:3.40.190.10 104 269 5.2E-50 T 11-10-2018 APT56_23435 fabbdaad9cdf6c25f2496cbb70e4b98e 295 SUPERFAMILY SSF46785 9 119 4.19E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23435 fabbdaad9cdf6c25f2496cbb70e4b98e 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 4.0E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23435 fabbdaad9cdf6c25f2496cbb70e4b98e 295 Gene3D G3DSA:3.40.190.10 171 264 5.2E-50 T 11-10-2018 APT56_23435 fabbdaad9cdf6c25f2496cbb70e4b98e 295 Gene3D G3DSA:1.10.10.10 9 94 2.1E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21255 f5cf09e5226720fb5ed6af4023507c99 346 Pfam PF13421 SPFH domain-Band 7 family 26 235 3.1E-73 T 11-10-2018 IPR033880 SPFH domain, YdjI-like APT56_21255 f5cf09e5226720fb5ed6af4023507c99 346 Pfam PF09851 Short C-terminal domain 314 341 1.6E-7 T 11-10-2018 IPR018649 SHOCT domain APT56_21255 f5cf09e5226720fb5ed6af4023507c99 346 Gene3D G3DSA:3.30.479.30 112 233 9.7E-8 T 11-10-2018 APT56_21255 f5cf09e5226720fb5ed6af4023507c99 346 SUPERFAMILY SSF117892 124 231 1.57E-11 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily APT56_05480 1964a1c2f6d21db9f941f555b0728c90 150 Pfam PF12680 SnoaL-like domain 35 132 3.9E-16 T 11-10-2018 IPR037401 SnoaL-like domain APT56_05480 1964a1c2f6d21db9f941f555b0728c90 150 Gene3D G3DSA:3.10.450.50 24 150 5.6E-43 T 11-10-2018 APT56_05480 1964a1c2f6d21db9f941f555b0728c90 150 SUPERFAMILY SSF54427 30 140 1.01E-26 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_05615 9f11d48e7f690a4d1e17aed604ea4e2c 199 Gene3D G3DSA:3.40.630.30 4 162 7.4E-42 T 11-10-2018 APT56_05615 9f11d48e7f690a4d1e17aed604ea4e2c 199 SUPERFAMILY SSF55729 5 172 4.33E-35 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_05615 9f11d48e7f690a4d1e17aed604ea4e2c 199 Pfam PF13302 Acetyltransferase (GNAT) domain 11 151 4.5E-28 T 11-10-2018 IPR000182 GNAT domain APT56_14315 c3f3e52561e4b8824adc396343544d2a 343 SUPERFAMILY SSF55869 37 97 2.09E-20 T 11-10-2018 IPR035447 DNA topoisomerase I, N-terminal APT56_14315 c3f3e52561e4b8824adc396343544d2a 343 Gene3D G3DSA:1.10.132.120 105 318 2.7E-82 T 11-10-2018 APT56_14315 c3f3e52561e4b8824adc396343544d2a 343 Gene3D G3DSA:3.90.15.10 128 247 2.7E-82 T 11-10-2018 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 APT56_14315 c3f3e52561e4b8824adc396343544d2a 343 SUPERFAMILY SSF56349 93 315 2.65E-63 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT56_14315 c3f3e52561e4b8824adc396343544d2a 343 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 99 298 2.4E-26 T 11-10-2018 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 APT56_14315 c3f3e52561e4b8824adc396343544d2a 343 Gene3D G3DSA:3.30.66.10 21 104 5.5E-31 T 11-10-2018 IPR035447 DNA topoisomerase I, N-terminal APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SUPERFAMILY SSF48452 150 445 9.7E-31 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SUPERFAMILY SSF48452 14 198 2.61E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 Gene3D G3DSA:1.25.40.10 415 499 2.3E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 103 136 17.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 171 204 12.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 444 477 15.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 375 408 230.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 409 442 30.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 205 238 130.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 137 170 0.025 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 35 68 360.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 SMART SM00028 307 340 0.0056 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 Gene3D G3DSA:1.25.40.10 1 106 1.5E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 Pfam PF14559 Tetratricopeptide repeat 389 441 1.9E-7 T 11-10-2018 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 Pfam PF13432 Tetratricopeptide repeat 279 340 1.5E-6 T 11-10-2018 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 Gene3D G3DSA:1.25.40.10 273 414 1.6E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 Gene3D G3DSA:1.25.40.10 107 272 2.0E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_05975 35222c49add0b03dc447787b6bb4f482 511 Pfam PF13424 Tetratricopeptide repeat 143 201 9.7E-8 T 11-10-2018 APT56_26070 b7f2c6bb0e95e712e8c02063c0e866d2 63 Pfam PF11174 Protein of unknown function (DUF2970) 4 59 5.0E-22 T 11-10-2018 IPR021344 Protein of unknown function DUF2970 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 8 574 5.8E-174 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 Pfam PF05746 DALR anticodon binding domain 605 703 1.5E-5 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 9 22 4.5E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 260 275 4.5E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 333 349 4.5E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 54 66 4.5E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 409 428 4.5E-31 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 5 710 21.704 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 SUPERFAMILY SSF109604 355 501 4.81E-11 T 11-10-2018 APT56_04700 d3bb20413d8623cec171fc41c14837c3 712 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 7 710 3.9E-164 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_15010 f2cd66ca6560298c60534e556cc38866 416 Pfam PF13458 Periplasmic binding protein 27 359 4.2E-53 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_15010 f2cd66ca6560298c60534e556cc38866 416 SUPERFAMILY SSF53822 27 411 3.34E-76 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_15010 f2cd66ca6560298c60534e556cc38866 416 Gene3D G3DSA:3.40.50.2300 162 294 1.3E-80 T 11-10-2018 APT56_15010 f2cd66ca6560298c60534e556cc38866 416 Gene3D G3DSA:3.40.50.2300 29 357 1.3E-80 T 11-10-2018 APT56_10645 7b6efe58e0aa5abc4a1ccce34767ac7b 220 SUPERFAMILY SSF56214 83 195 9.16E-20 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_10645 7b6efe58e0aa5abc4a1ccce34767ac7b 220 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 84 163 1.3E-13 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_10645 7b6efe58e0aa5abc4a1ccce34767ac7b 220 Gene3D G3DSA:3.90.470.20 84 184 2.0E-16 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_24470 439925c0ae38bd8ea695c7f0132750f5 764 Pfam PF00593 TonB dependent receptor 300 762 2.1E-45 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_24470 439925c0ae38bd8ea695c7f0132750f5 764 SUPERFAMILY SSF56935 39 764 8.24E-111 T 11-10-2018 APT56_24470 439925c0ae38bd8ea695c7f0132750f5 764 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 80 764 6.1E-93 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_24470 439925c0ae38bd8ea695c7f0132750f5 764 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 747 764 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_24470 439925c0ae38bd8ea695c7f0132750f5 764 Gene3D G3DSA:2.170.130.10 56 189 1.6E-32 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_24470 439925c0ae38bd8ea695c7f0132750f5 764 Gene3D G3DSA:2.40.170.20 190 764 1.9E-146 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_24470 439925c0ae38bd8ea695c7f0132750f5 764 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 180 1.1E-15 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_04985 f5519c7ad3c4696f55a7da8fd9bbdd17 396 Pfam PF12704 MacB-like periplasmic core domain 25 239 1.9E-20 T 11-10-2018 IPR025857 MacB-like periplasmic core domain APT56_04985 f5519c7ad3c4696f55a7da8fd9bbdd17 396 Pfam PF02687 FtsX-like permease family 301 389 9.3E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APT56_07310 0fe376db0174caddfb71f797504a113e 693 Pfam PF13307 Helicase C-terminal domain 510 674 1.0E-32 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 APT56_07310 0fe376db0174caddfb71f797504a113e 693 SUPERFAMILY SSF52540 516 648 1.34E-7 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07310 0fe376db0174caddfb71f797504a113e 693 Gene3D G3DSA:3.40.50.300 23 283 1.1E-46 T 11-10-2018 APT56_07310 0fe376db0174caddfb71f797504a113e 693 SMART SM00491 531 661 2.3E-28 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 APT56_07310 0fe376db0174caddfb71f797504a113e 693 Pfam PF06733 DEAD_2 177 253 6.4E-5 T 11-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 APT56_07310 0fe376db0174caddfb71f797504a113e 693 SUPERFAMILY SSF52540 3 647 4.41E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07310 0fe376db0174caddfb71f797504a113e 693 Gene3D G3DSA:3.40.50.300 494 692 6.9E-34 T 11-10-2018 APT56_24505 b141ba971fa515712f362cec866eb6be 313 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 5 261 1.7E-67 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APT56_24505 b141ba971fa515712f362cec866eb6be 313 SUPERFAMILY SSF54211 6 156 1.52E-45 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_24505 b141ba971fa515712f362cec866eb6be 313 Gene3D G3DSA:3.30.70.890 161 286 7.1E-22 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily APT56_24505 b141ba971fa515712f362cec866eb6be 313 Gene3D G3DSA:3.30.230.10 1 158 5.8E-55 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_24505 b141ba971fa515712f362cec866eb6be 313 PIRSF PIRSF010376 2 289 2.2E-86 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APT56_24505 b141ba971fa515712f362cec866eb6be 313 SUPERFAMILY SSF55060 159 276 9.59E-25 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily APT56_24505 b141ba971fa515712f362cec866eb6be 313 Pfam PF00288 GHMP kinases N terminal domain 87 143 2.5E-10 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 APT56_24505 b141ba971fa515712f362cec866eb6be 313 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 4 280 32.319 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APT56_11635 679932fc96d36108a272e8c26e26f024 475 Gene3D G3DSA:3.30.450.90 76 212 4.6E-51 T 11-10-2018 APT56_11635 679932fc96d36108a272e8c26e26f024 475 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 5 472 4.8E-214 T 11-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 APT56_11635 679932fc96d36108a272e8c26e26f024 475 SMART SM00382 240 366 4.8E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11635 679932fc96d36108a272e8c26e26f024 475 Pfam PF00437 Type II/IV secretion system protein 117 379 1.6E-86 T 11-10-2018 IPR001482 Type II/IV secretion system protein APT56_11635 679932fc96d36108a272e8c26e26f024 475 SUPERFAMILY SSF52540 91 472 3.8E-105 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11635 679932fc96d36108a272e8c26e26f024 475 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 307 321 - T 11-10-2018 IPR001482 Type II/IV secretion system protein APT56_11635 679932fc96d36108a272e8c26e26f024 475 Gene3D G3DSA:3.40.50.300 213 475 5.0E-113 T 11-10-2018 APT56_11635 679932fc96d36108a272e8c26e26f024 475 SUPERFAMILY SSF160246 4 66 9.68E-8 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily APT56_19110 4990b084ab99f0f5da2ebf37743b314f 287 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 22 284 3.4E-51 T 11-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 APT56_19110 4990b084ab99f0f5da2ebf37743b314f 287 SUPERFAMILY SSF53613 23 282 3.27E-61 T 11-10-2018 IPR029056 Ribokinase-like APT56_19110 4990b084ab99f0f5da2ebf37743b314f 287 Pfam PF08543 Phosphomethylpyrimidine kinase 100 279 6.7E-23 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 APT56_19110 4990b084ab99f0f5da2ebf37743b314f 287 Gene3D G3DSA:3.40.1190.20 19 286 6.8E-74 T 11-10-2018 IPR029056 Ribokinase-like APT56_21695 bf40ea2a41007e4e8255d0e79a18c809 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 270 4.9E-6 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_21695 bf40ea2a41007e4e8255d0e79a18c809 282 Gene3D G3DSA:1.10.3720.10 8 277 6.2E-58 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21695 bf40ea2a41007e4e8255d0e79a18c809 282 SUPERFAMILY SSF161098 11 273 1.96E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_26590 4aa9d99a7483b90adabe1f01da8a107b 296 SUPERFAMILY SSF53850 90 295 7.45E-39 T 11-10-2018 APT56_26590 4aa9d99a7483b90adabe1f01da8a107b 296 SUPERFAMILY SSF46785 3 113 8.55E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26590 4aa9d99a7483b90adabe1f01da8a107b 296 Gene3D G3DSA:1.10.10.10 3 89 7.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26590 4aa9d99a7483b90adabe1f01da8a107b 296 Pfam PF03466 LysR substrate binding domain 90 293 2.2E-35 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_26590 4aa9d99a7483b90adabe1f01da8a107b 296 Gene3D G3DSA:3.40.190.290 92 291 1.3E-57 T 11-10-2018 APT56_26590 4aa9d99a7483b90adabe1f01da8a107b 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.1E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_12090 cf4c6569744da6aedfed9ab1f3fc3b47 202 Pfam PF03748 Flagellar basal body-associated protein FliL 102 202 3.9E-21 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 323 8.8E-58 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 SUPERFAMILY SSF55831 1 323 1.44E-96 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 ProSitePatterns PS00091 Thymidylate synthase active site. 172 199 - T 11-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 Pfam PF00303 Thymidylate synthase 2 323 3.8E-86 T 11-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 Hamap MF_00008 Thymidylate synthase [thyA]. 1 323 35.074 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 Gene3D G3DSA:3.30.572.10 1 323 2.6E-121 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 PRINTS PR00108 Thymidylate synthase family signature 187 202 2.5E-28 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 PRINTS PR00108 Thymidylate synthase family signature 42 63 2.5E-28 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 PRINTS PR00108 Thymidylate synthase family signature 245 262 2.5E-28 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 PRINTS PR00108 Thymidylate synthase family signature 207 233 2.5E-28 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_24695 7ac05912809759dcc020d48c61aa06c1 323 PRINTS PR00108 Thymidylate synthase family signature 161 180 2.5E-28 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APT56_02810 a7f2dfd1d418886914a4522b48d29d0e 338 SUPERFAMILY SSF53850 123 298 5.33E-12 T 11-10-2018 APT56_02810 a7f2dfd1d418886914a4522b48d29d0e 338 Gene3D G3DSA:3.40.190.150 38 328 1.1E-115 T 11-10-2018 APT56_02810 a7f2dfd1d418886914a4522b48d29d0e 338 Gene3D G3DSA:3.40.190.10 136 263 1.1E-115 T 11-10-2018 APT56_02810 a7f2dfd1d418886914a4522b48d29d0e 338 PIRSF PIRSF017082 1 337 2.7E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02810 a7f2dfd1d418886914a4522b48d29d0e 338 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 331 3.0E-89 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_11360 edb43dd842a7df9d886db7b0793bce02 395 Pfam PF01266 FAD dependent oxidoreductase 5 360 1.8E-54 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_11360 edb43dd842a7df9d886db7b0793bce02 395 SUPERFAMILY SSF51905 4 387 7.77E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_11360 edb43dd842a7df9d886db7b0793bce02 395 Gene3D G3DSA:3.30.9.10 88 324 1.1E-90 T 11-10-2018 APT56_11360 edb43dd842a7df9d886db7b0793bce02 395 Gene3D G3DSA:3.50.50.60 5 366 1.1E-90 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_08055 da1f299ac57742922330c3c9e20e6bdb 88 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 20 60 4.0E-13 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT56_08055 da1f299ac57742922330c3c9e20e6bdb 88 PIRSF PIRSF006488 5 88 8.6E-24 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT56_08055 da1f299ac57742922330c3c9e20e6bdb 88 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 19 79 15.062 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT56_08055 da1f299ac57742922330c3c9e20e6bdb 88 SUPERFAMILY SSF116842 17 80 8.37E-20 T 11-10-2018 APT56_08055 da1f299ac57742922330c3c9e20e6bdb 88 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 19 73 1.5E-22 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT56_08055 da1f299ac57742922330c3c9e20e6bdb 88 Pfam PF02609 Exonuclease VII small subunit 20 70 1.3E-20 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APT56_08055 da1f299ac57742922330c3c9e20e6bdb 88 Gene3D G3DSA:1.10.287.1040 13 88 1.7E-30 T 11-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 APT56_19680 f5639a337c7b363e336e67b8a9fec86b 731 Pfam PF00593 TonB dependent receptor 276 729 5.1E-43 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_19680 f5639a337c7b363e336e67b8a9fec86b 731 Gene3D G3DSA:2.170.130.10 66 186 4.6E-23 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_19680 f5639a337c7b363e336e67b8a9fec86b 731 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 75 731 2.4E-109 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_19680 f5639a337c7b363e336e67b8a9fec86b 731 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 714 731 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_19680 f5639a337c7b363e336e67b8a9fec86b 731 Gene3D G3DSA:2.40.170.20 191 731 2.2E-79 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_19680 f5639a337c7b363e336e67b8a9fec86b 731 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 169 4.6E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_19680 f5639a337c7b363e336e67b8a9fec86b 731 SUPERFAMILY SSF56935 64 731 8.63E-107 T 11-10-2018 APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 Pfam PF16326 ABC transporter C-terminal domain 565 627 6.4E-8 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 Gene3D G3DSA:3.40.50.300 2 269 7.4E-59 T 11-10-2018 APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 SMART SM00382 335 502 3.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 SMART SM00382 20 222 6.6E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 Pfam PF00005 ABC transporter 11 171 7.0E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 Pfam PF00005 ABC transporter 326 457 6.1E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 Pfam PF12848 ABC transporter 210 285 3.9E-23 T 11-10-2018 IPR032781 ABC-transporter extension domain APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 ProSitePatterns PS00211 ABC transporters family signature. 429 443 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 SUPERFAMILY SSF52540 1 223 1.02E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 SUPERFAMILY SSF52540 292 514 1.11E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17925 1c040d0255a572a63387ad1e5a5d3b55 638 Gene3D G3DSA:3.40.50.300 270 538 3.0E-54 T 11-10-2018 APT56_00740 2a7ba78e700a4f3ea0f32a97f9723c74 142 PIRSF PIRSF004638 1 142 1.1E-24 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 APT56_00740 2a7ba78e700a4f3ea0f32a97f9723c74 142 Pfam PF03653 Uncharacterised protein family (UPF0093) 3 142 5.9E-18 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 APT56_13960 6fc454cae5df09409d3f4fa72256014f 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 321 1.5E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13960 6fc454cae5df09409d3f4fa72256014f 326 Gene3D G3DSA:3.40.190.150 30 316 3.8E-106 T 11-10-2018 APT56_13960 6fc454cae5df09409d3f4fa72256014f 326 PIRSF PIRSF017082 1 326 7.0E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13960 6fc454cae5df09409d3f4fa72256014f 326 SUPERFAMILY SSF53850 119 288 2.82E-13 T 11-10-2018 APT56_13960 6fc454cae5df09409d3f4fa72256014f 326 Gene3D G3DSA:3.40.190.10 127 251 3.8E-106 T 11-10-2018 APT56_04270 2b1ef4c15456b99c81806d74da81c291 217 SUPERFAMILY SSF53850 8 103 7.96E-8 T 11-10-2018 APT56_04270 2b1ef4c15456b99c81806d74da81c291 217 Gene3D G3DSA:3.40.190.10 2 71 1.1E-15 T 11-10-2018 APT56_04270 2b1ef4c15456b99c81806d74da81c291 217 Gene3D G3DSA:3.40.190.10 72 98 1.1E-15 T 11-10-2018 APT56_12750 4edfe15f5c9b09fbf16226464fc8c0ef 183 Pfam PF00210 Ferritin-like domain 38 171 3.1E-25 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT56_12750 4edfe15f5c9b09fbf16226464fc8c0ef 183 PIRSF PIRSF005900 14 180 1.4E-49 T 11-10-2018 IPR002177 DNA-binding protein Dps APT56_12750 4edfe15f5c9b09fbf16226464fc8c0ef 183 SUPERFAMILY SSF47240 19 173 1.83E-45 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_12750 4edfe15f5c9b09fbf16226464fc8c0ef 183 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 57 73 1.2E-7 T 11-10-2018 IPR002177 DNA-binding protein Dps APT56_12750 4edfe15f5c9b09fbf16226464fc8c0ef 183 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 153 171 1.2E-7 T 11-10-2018 IPR002177 DNA-binding protein Dps APT56_12750 4edfe15f5c9b09fbf16226464fc8c0ef 183 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 81 97 1.2E-7 T 11-10-2018 IPR002177 DNA-binding protein Dps APT56_12750 4edfe15f5c9b09fbf16226464fc8c0ef 183 Gene3D G3DSA:1.20.1260.10 9 175 1.1E-45 T 11-10-2018 IPR012347 Ferritin-like APT56_02020 a82155851561ad1eb418ebe7f5c0c0bc 262 SUPERFAMILY SSF51366 1 261 5.65E-87 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_02020 a82155851561ad1eb418ebe7f5c0c0bc 262 Gene3D G3DSA:3.20.20.70 1 262 1.1E-101 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_02020 a82155851561ad1eb418ebe7f5c0c0bc 262 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 11-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 APT56_02020 a82155851561ad1eb418ebe7f5c0c0bc 262 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 258 1.3E-93 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 APT56_02020 a82155851561ad1eb418ebe7f5c0c0bc 262 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 35.146 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 APT56_07760 d7988cad2438193282e627108b8bccd9 94 PIRSF PIRSF030200 1 94 1.8E-42 T 11-10-2018 IPR009359 Phenylacetic acid degradation B APT56_07760 d7988cad2438193282e627108b8bccd9 94 Gene3D G3DSA:3.10.20.520 1 64 2.4E-31 T 11-10-2018 IPR038693 Phenylacetyl-CoA epoxidase, subunit B APT56_07760 d7988cad2438193282e627108b8bccd9 94 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 5 94 2.5E-42 T 11-10-2018 IPR009359 Phenylacetic acid degradation B APT56_07760 d7988cad2438193282e627108b8bccd9 94 Pfam PF06243 Phenylacetic acid degradation B 4 90 1.1E-38 T 11-10-2018 IPR009359 Phenylacetic acid degradation B APT56_12735 5c529709dfc0e7e9f52383df38201d44 396 Gene3D G3DSA:1.20.1250.20 202 390 1.9E-33 T 11-10-2018 APT56_12735 5c529709dfc0e7e9f52383df38201d44 396 Pfam PF12832 MFS_1 like family 12 360 1.7E-49 T 11-10-2018 IPR024989 Major facilitator superfamily associated domain APT56_12735 5c529709dfc0e7e9f52383df38201d44 396 PIRSF PIRSF004925 4 395 1.4E-89 T 11-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter APT56_12735 5c529709dfc0e7e9f52383df38201d44 396 SUPERFAMILY SSF103473 11 389 2.62E-46 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_12735 5c529709dfc0e7e9f52383df38201d44 396 Gene3D G3DSA:1.20.1250.20 11 193 9.6E-23 T 11-10-2018 APT56_04210 d35fc532877c9a73f6f74c213ae1e879 262 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 260 20.643 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 APT56_04210 d35fc532877c9a73f6f74c213ae1e879 262 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 260 2.3E-82 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 APT56_04210 d35fc532877c9a73f6f74c213ae1e879 262 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 139 151 - T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 APT56_04210 d35fc532877c9a73f6f74c213ae1e879 262 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 254 1.8E-84 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 APT56_00380 7108911e475cf91336a3d2bc23e7a2ff 387 Gene3D G3DSA:3.20.20.70 7 382 1.2E-132 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_00380 7108911e475cf91336a3d2bc23e7a2ff 387 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 278 284 - T 11-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_00380 7108911e475cf91336a3d2bc23e7a2ff 387 SUPERFAMILY SSF51395 8 373 1.28E-105 T 11-10-2018 APT56_00380 7108911e475cf91336a3d2bc23e7a2ff 387 Pfam PF01070 FMN-dependent dehydrogenase 18 378 8.0E-134 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 APT56_00380 7108911e475cf91336a3d2bc23e7a2ff 387 PIRSF PIRSF000138 1 382 3.9E-124 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APT56_07210 cae3583994c69e4efad7d81091d551dc 683 Pfam PF03169 OPT oligopeptide transporter protein 15 639 1.8E-107 T 11-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 APT56_07210 cae3583994c69e4efad7d81091d551dc 683 TIGRFAM TIGR00733 TIGR00733: oligopeptide transporter, OPT family 15 640 3.6E-214 T 11-10-2018 IPR004814 Oligopeptide transporter OPT APT56_07210 cae3583994c69e4efad7d81091d551dc 683 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 8 636 1.4E-114 T 11-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 SUPERFAMILY SSF51735 53 290 1.49E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 61 288 2.9E-60 T 11-10-2018 APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 Gene3D G3DSA:3.40.50.720 12 292 3.3E-86 T 11-10-2018 APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 2.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 139 2.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 2.3E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 139 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 219 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 255 275 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 53 70 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 190 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 238 2.7E-37 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14330 cf0e169cd2fb8df6bb125e46492cee94 294 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 187 215 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_27770 ebb6a2693e1284394d7eb68f4e0ea950 390 Gene3D G3DSA:3.40.50.2300 144 363 1.8E-123 T 11-10-2018 APT56_27770 ebb6a2693e1284394d7eb68f4e0ea950 390 SUPERFAMILY SSF53822 24 385 2.19E-65 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_27770 ebb6a2693e1284394d7eb68f4e0ea950 390 Pfam PF13458 Periplasmic binding protein 25 362 1.7E-53 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_27770 ebb6a2693e1284394d7eb68f4e0ea950 390 Gene3D G3DSA:3.40.50.2300 32 355 1.8E-123 T 11-10-2018 APT56_15540 18dbe629dd8bdba2b2bd7524dfa937cc 138 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT56_15540 18dbe629dd8bdba2b2bd7524dfa937cc 138 Pfam PF00472 RF-1 domain 8 132 2.3E-24 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APT56_15540 18dbe629dd8bdba2b2bd7524dfa937cc 138 Gene3D G3DSA:3.30.160.20 1 138 1.3E-41 T 11-10-2018 APT56_15540 18dbe629dd8bdba2b2bd7524dfa937cc 138 SUPERFAMILY SSF75620 7 115 1.06E-13 T 11-10-2018 APT56_24760 9793898eb53f405e3f4a52f59ec84978 656 Pfam PF10722 Putative bacterial sensory transduction regulator 524 650 3.2E-14 T 11-10-2018 IPR019660 Putative sensory transduction regulator YbjN APT56_24760 9793898eb53f405e3f4a52f59ec84978 656 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 472 2.8E-112 T 11-10-2018 IPR010352 Protein of unknown function DUF945 APT56_27125 54e4419fa0dd1f92271221517f6455d3 254 SMART SM00895 108 231 2.1E-12 T 11-10-2018 IPR011711 GntR, C-terminal APT56_27125 54e4419fa0dd1f92271221517f6455d3 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 38 98 1.6E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_27125 54e4419fa0dd1f92271221517f6455d3 254 Gene3D G3DSA:1.10.10.10 8 99 9.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27125 54e4419fa0dd1f92271221517f6455d3 254 Gene3D G3DSA:1.20.120.530 101 240 1.3E-19 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_27125 54e4419fa0dd1f92271221517f6455d3 254 SUPERFAMILY SSF48008 103 236 1.05E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_27125 54e4419fa0dd1f92271221517f6455d3 254 SUPERFAMILY SSF46785 31 102 3.93E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_27125 54e4419fa0dd1f92271221517f6455d3 254 Pfam PF07729 FCD domain 108 230 2.4E-18 T 11-10-2018 IPR011711 GntR, C-terminal APT56_27125 54e4419fa0dd1f92271221517f6455d3 254 SMART SM00345 40 98 5.2E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_22955 8a203ed58ef903383dd2123584376da1 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22955 8a203ed58ef903383dd2123584376da1 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22955 8a203ed58ef903383dd2123584376da1 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.7E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22955 8a203ed58ef903383dd2123584376da1 308 SUPERFAMILY SSF46785 5 87 1.77E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_22955 8a203ed58ef903383dd2123584376da1 308 Gene3D G3DSA:3.40.190.10 167 276 3.1E-64 T 11-10-2018 APT56_22955 8a203ed58ef903383dd2123584376da1 308 SUPERFAMILY SSF53850 91 302 4.26E-37 T 11-10-2018 APT56_22955 8a203ed58ef903383dd2123584376da1 308 Pfam PF03466 LysR substrate binding domain 91 300 1.5E-41 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_22955 8a203ed58ef903383dd2123584376da1 308 Gene3D G3DSA:1.10.10.10 4 92 6.0E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_22955 8a203ed58ef903383dd2123584376da1 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 6.6E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_22955 8a203ed58ef903383dd2123584376da1 308 Gene3D G3DSA:3.40.190.10 93 294 3.1E-64 T 11-10-2018 APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 Gene3D G3DSA:3.40.50.720 10 256 1.5E-68 T 11-10-2018 APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 Pfam PF00106 short chain dehydrogenase 11 202 5.5E-51 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 2.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.4E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.7E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 184 6.2E-4 T 11-10-2018 APT56_14905 021376be5f7a1186a0316b98cf9b07da 256 SUPERFAMILY SSF51735 10 236 5.39E-62 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_12860 aee5d698e6b37b2c1eefda637bc450f1 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 1.5E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_12860 aee5d698e6b37b2c1eefda637bc450f1 308 SUPERFAMILY SSF46785 6 111 5.22E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12860 aee5d698e6b37b2c1eefda637bc450f1 308 Gene3D G3DSA:3.40.190.290 92 298 7.9E-36 T 11-10-2018 APT56_12860 aee5d698e6b37b2c1eefda637bc450f1 308 SUPERFAMILY SSF53850 92 295 2.85E-36 T 11-10-2018 APT56_12860 aee5d698e6b37b2c1eefda637bc450f1 308 Pfam PF03466 LysR substrate binding domain 92 294 3.0E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_12860 aee5d698e6b37b2c1eefda637bc450f1 308 Gene3D G3DSA:1.10.10.10 5 87 1.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02545 3af2f6bfc083729e9a1000c6fab112a2 256 Gene3D G3DSA:3.20.20.370 3 254 7.6E-107 T 11-10-2018 APT56_02545 3af2f6bfc083729e9a1000c6fab112a2 256 Pfam PF03746 LamB/YcsF family 5 243 9.2E-104 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 APT56_02545 3af2f6bfc083729e9a1000c6fab112a2 256 SUPERFAMILY SSF88713 4 250 1.7E-100 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_02545 3af2f6bfc083729e9a1000c6fab112a2 256 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 3 247 47.105 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 APT56_05010 475358759d2eec32a1f69749f2bd3217 157 Pfam PF00866 Ring hydroxylating beta subunit 18 150 4.0E-12 T 11-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 APT56_05010 475358759d2eec32a1f69749f2bd3217 157 SUPERFAMILY SSF54427 2 157 6.41E-46 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_05010 475358759d2eec32a1f69749f2bd3217 157 Gene3D G3DSA:3.10.450.50 5 157 3.5E-38 T 11-10-2018 APT56_23405 4bb5e7ee28ecc42fb6d6e0070840893e 450 Pfam PF01554 MatE 16 175 2.1E-19 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_23405 4bb5e7ee28ecc42fb6d6e0070840893e 450 Pfam PF01554 MatE 246 392 9.9E-21 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_23405 4bb5e7ee28ecc42fb6d6e0070840893e 450 PIRSF PIRSF006603 1 447 5.8E-70 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_23405 4bb5e7ee28ecc42fb6d6e0070840893e 450 TIGRFAM TIGR00797 matE: MATE efflux family protein 16 393 7.9E-48 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APT56_08350 f2edeabc3ce71b730fadbeca74740f2a 100 Pfam PF07876 Stress responsive A/B Barrel Domain 4 94 7.0E-10 T 11-10-2018 IPR013097 Stress responsive alpha-beta barrel APT56_08350 f2edeabc3ce71b730fadbeca74740f2a 100 SUPERFAMILY SSF54909 1 97 5.72E-17 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_08350 f2edeabc3ce71b730fadbeca74740f2a 100 Gene3D G3DSA:3.30.70.100 1 99 3.4E-19 T 11-10-2018 APT56_08350 f2edeabc3ce71b730fadbeca74740f2a 100 SMART SM00886 2 96 2.8E-15 T 11-10-2018 IPR013097 Stress responsive alpha-beta barrel APT56_04010 b60b4177f6c17bf6ff98e31b27504bdc 295 SUPERFAMILY SSF53474 24 285 1.33E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_04010 b60b4177f6c17bf6ff98e31b27504bdc 295 Gene3D G3DSA:3.40.50.1820 26 285 2.1E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_04010 b60b4177f6c17bf6ff98e31b27504bdc 295 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 122 2.0E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_04010 b60b4177f6c17bf6ff98e31b27504bdc 295 PRINTS PR00111 Alpha/beta hydrolase fold signature 154 167 2.0E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_04010 b60b4177f6c17bf6ff98e31b27504bdc 295 Pfam PF12146 Serine aminopeptidase, S33 81 195 6.8E-17 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 APT56_08320 9aefec0f9618c463c8939bce288c4614 403 Gene3D G3DSA:3.40.50.2300 54 359 4.6E-109 T 11-10-2018 APT56_08320 9aefec0f9618c463c8939bce288c4614 403 SUPERFAMILY SSF53822 30 401 9.08E-90 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_08320 9aefec0f9618c463c8939bce288c4614 403 Gene3D G3DSA:3.40.50.2300 149 367 4.6E-109 T 11-10-2018 APT56_08320 9aefec0f9618c463c8939bce288c4614 403 Pfam PF13458 Periplasmic binding protein 30 366 1.2E-85 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_06025 6fccddf2d20e162fdac7c6a9d94cbba4 163 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 7 76 9.1E-25 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APT56_06025 6fccddf2d20e162fdac7c6a9d94cbba4 163 Pfam PF03840 Preprotein translocase SecG subunit 7 76 1.4E-21 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APT56_06025 6fccddf2d20e162fdac7c6a9d94cbba4 163 PRINTS PR01651 Protein-export SecG membrane protein signature 57 79 1.2E-29 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APT56_06025 6fccddf2d20e162fdac7c6a9d94cbba4 163 PRINTS PR01651 Protein-export SecG membrane protein signature 6 26 1.2E-29 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APT56_06025 6fccddf2d20e162fdac7c6a9d94cbba4 163 PRINTS PR01651 Protein-export SecG membrane protein signature 26 40 1.2E-29 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APT56_06025 6fccddf2d20e162fdac7c6a9d94cbba4 163 PRINTS PR01651 Protein-export SecG membrane protein signature 41 57 1.2E-29 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 Gene3D G3DSA:3.40.190.290 92 300 9.5E-35 T 11-10-2018 APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 59 1.4E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 Gene3D G3DSA:1.10.10.10 1 90 8.6E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 Pfam PF03466 LysR substrate binding domain 91 292 1.1E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 SUPERFAMILY SSF53850 92 297 2.79E-37 T 11-10-2018 APT56_18300 855831ae56c1a83a1b1bb0e063eff7c3 304 SUPERFAMILY SSF46785 2 80 6.33E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17510 04f3eb102c7f0232826f06c9737721d6 323 Pfam PF01032 FecCD transport family 10 316 1.7E-62 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APT56_17510 04f3eb102c7f0232826f06c9737721d6 323 SUPERFAMILY SSF81345 5 316 2.88E-59 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_17510 04f3eb102c7f0232826f06c9737721d6 323 Gene3D G3DSA:1.10.3470.10 4 322 3.8E-61 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_20840 358693e129e1313dbb2bee00489e5ae4 230 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 11 210 1.0E-26 T 11-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 APT56_18605 bf4e017fd13974714a39df9e36c0ac32 246 SUPERFAMILY SSF46785 21 90 4.16E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18605 bf4e017fd13974714a39df9e36c0ac32 246 SMART SM00346 19 108 2.0E-17 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_18605 bf4e017fd13974714a39df9e36c0ac32 246 Gene3D G3DSA:1.10.10.10 5 78 2.2E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18605 bf4e017fd13974714a39df9e36c0ac32 246 SUPERFAMILY SSF55781 85 237 1.18E-34 T 11-10-2018 APT56_18605 bf4e017fd13974714a39df9e36c0ac32 246 Pfam PF09339 IclR helix-turn-helix domain 21 72 4.3E-13 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_18605 bf4e017fd13974714a39df9e36c0ac32 246 Pfam PF01614 Bacterial transcriptional regulator 169 235 7.2E-10 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_18605 bf4e017fd13974714a39df9e36c0ac32 246 Gene3D G3DSA:3.30.450.40 167 241 1.1E-13 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_18605 bf4e017fd13974714a39df9e36c0ac32 246 Gene3D G3DSA:3.30.450.40 86 166 5.7E-21 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_09120 2f416364a8458f89bb410595a7e13161 605 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 18 288 1.5E-81 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 APT56_09120 2f416364a8458f89bb410595a7e13161 605 Pfam PF02254 TrkA-N domain 406 518 1.7E-19 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APT56_09120 2f416364a8458f89bb410595a7e13161 605 SUPERFAMILY SSF51735 406 533 1.65E-29 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_09120 2f416364a8458f89bb410595a7e13161 605 Pfam PF00999 Sodium/hydrogen exchanger family 14 377 1.8E-69 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT56_09120 2f416364a8458f89bb410595a7e13161 605 Gene3D G3DSA:3.40.50.720 405 561 1.3E-31 T 11-10-2018 APT56_09120 2f416364a8458f89bb410595a7e13161 605 Gene3D G3DSA:1.20.1530.20 6 386 2.5E-81 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APT56_16525 c8b94b1ad2ff3783fb926f012b8dcaef 170 Pfam PF13671 AAA domain 16 157 4.5E-26 T 11-10-2018 APT56_16525 c8b94b1ad2ff3783fb926f012b8dcaef 170 Gene3D G3DSA:3.40.50.300 13 168 2.2E-26 T 11-10-2018 APT56_16525 c8b94b1ad2ff3783fb926f012b8dcaef 170 SUPERFAMILY SSF52540 13 136 2.91E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01710 6fa611f6d46bb2ab52fac060f0caf73b 762 Gene3D G3DSA:2.60.40.2070 678 749 6.0E-6 T 11-10-2018 APT56_01710 6fa611f6d46bb2ab52fac060f0caf73b 762 Gene3D G3DSA:2.60.40.2610 583 673 1.8E-18 T 11-10-2018 APT56_01710 6fa611f6d46bb2ab52fac060f0caf73b 762 Pfam PF13953 PapC C-terminal domain 681 737 9.9E-10 T 11-10-2018 IPR025949 PapC-like, C-terminal domain APT56_01710 6fa611f6d46bb2ab52fac060f0caf73b 762 Pfam PF00577 Outer membrane usher protein 238 377 1.9E-6 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 APT56_01710 6fa611f6d46bb2ab52fac060f0caf73b 762 Pfam PF00577 Outer membrane usher protein 460 669 4.2E-21 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 APT56_27170 3d73b854f2fe2a1c679109196dcf095a 288 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 3 271 2.7E-36 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APT56_27170 3d73b854f2fe2a1c679109196dcf095a 288 PIRSF PIRSF026649 1 280 3.5E-81 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APT56_19770 2f0f3ffd4623b03a162586e3d90590ea 446 SUPERFAMILY SSF52172 29 140 8.94E-8 T 11-10-2018 IPR011006 CheY-like superfamily APT56_19770 2f0f3ffd4623b03a162586e3d90590ea 446 Gene3D G3DSA:3.40.50.2300 16 144 4.0E-13 T 11-10-2018 APT56_19770 2f0f3ffd4623b03a162586e3d90590ea 446 SUPERFAMILY SSF52540 154 418 2.15E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19770 2f0f3ffd4623b03a162586e3d90590ea 446 Gene3D G3DSA:3.40.50.300 151 420 2.2E-36 T 11-10-2018 APT56_02790 572758c53f5fb86de7c776b372bd4891 338 SMART SM00062 34 263 2.7E-47 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_02790 572758c53f5fb86de7c776b372bd4891 338 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_02790 572758c53f5fb86de7c776b372bd4891 338 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 253 1.0E-33 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_02790 572758c53f5fb86de7c776b372bd4891 338 Gene3D G3DSA:3.40.190.10 29 241 2.9E-52 T 11-10-2018 APT56_02790 572758c53f5fb86de7c776b372bd4891 338 SUPERFAMILY SSF53850 25 256 6.22E-50 T 11-10-2018 APT56_02790 572758c53f5fb86de7c776b372bd4891 338 Gene3D G3DSA:3.40.190.10 121 226 2.9E-52 T 11-10-2018 APT56_19140 fad049820568c5e70afce366c160680e 567 SUPERFAMILY SSF56935 187 539 7.51E-9 T 11-10-2018 APT56_19140 fad049820568c5e70afce366c160680e 567 Pfam PF16930 Putative porin 35 567 1.0E-217 T 11-10-2018 IPR032638 Putative bacterial porin APT56_18720 720fb931f38c83bde785f2c84ac9f75d 579 SUPERFAMILY SSF53187 322 479 7.94E-18 T 11-10-2018 APT56_18720 720fb931f38c83bde785f2c84ac9f75d 579 Gene3D G3DSA:3.40.630.10 319 577 6.3E-20 T 11-10-2018 APT56_25975 c8bb1949a6749f6b9a0df198602c0894 259 Gene3D G3DSA:3.40.50.1820 1 258 5.0E-73 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_25975 c8bb1949a6749f6b9a0df198602c0894 259 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 10 257 4.9E-92 T 11-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 APT56_25975 c8bb1949a6749f6b9a0df198602c0894 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 2.0E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_25975 c8bb1949a6749f6b9a0df198602c0894 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 2.0E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_25975 c8bb1949a6749f6b9a0df198602c0894 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.0E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_25975 c8bb1949a6749f6b9a0df198602c0894 259 SUPERFAMILY SSF53474 1 258 2.4E-68 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_25975 c8bb1949a6749f6b9a0df198602c0894 259 Pfam PF00561 alpha/beta hydrolase fold 22 245 1.6E-24 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_26725 49551090eff9934d901183840d4e00c0 164 Pfam PF08534 Redoxin 25 149 3.8E-26 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APT56_26725 49551090eff9934d901183840d4e00c0 164 SUPERFAMILY SSF52833 21 162 8.27E-40 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_26725 49551090eff9934d901183840d4e00c0 164 Gene3D G3DSA:3.40.30.10 20 163 1.0E-41 T 11-10-2018 APT56_14955 8fa0e861d94e29ecf24392551e3035d7 1207 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 5 184 6.7E-60 T 11-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_14955 8fa0e861d94e29ecf24392551e3035d7 1207 Pfam PF02538 Hydantoinase B/oxoprolinase 689 1206 1.2E-199 T 11-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_14955 8fa0e861d94e29ecf24392551e3035d7 1207 Pfam PF01968 Hydantoinase/oxoprolinase 203 489 2.0E-115 T 11-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_19345 bd32baf423216690f7d2fac8d01e4fa7 179 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 131 2.2E-32 T 11-10-2018 APT56_19345 bd32baf423216690f7d2fac8d01e4fa7 179 SUPERFAMILY SSF54593 8 146 3.1E-18 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_19345 bd32baf423216690f7d2fac8d01e4fa7 179 Gene3D G3DSA:3.10.180.10 4 145 2.3E-33 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_14605 65673bc9746a3445d3ac4dc19c0dc4e0 174 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 74 156 2.5E-15 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 APT56_14605 65673bc9746a3445d3ac4dc19c0dc4e0 174 Pfam PF02592 Putative vitamin uptake transporter 76 162 2.7E-20 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 APT56_14605 65673bc9746a3445d3ac4dc19c0dc4e0 174 Pfam PF02592 Putative vitamin uptake transporter 33 75 1.1E-9 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 APT56_14605 65673bc9746a3445d3ac4dc19c0dc4e0 174 Hamap MF_02088 Probable queuosine precursor transporter. 4 172 14.285 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 APT56_25245 2f42d0c12b88a8f5fcdfb2019f2e92e0 280 Pfam PF01578 Cytochrome C assembly protein 61 276 6.3E-24 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APT56_21265 96f7f769a74cdddf4852e38b55d025a4 503 SUPERFAMILY SSF103473 2 192 6.28E-7 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_21265 96f7f769a74cdddf4852e38b55d025a4 503 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 285 298 - T 11-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 APT56_21265 96f7f769a74cdddf4852e38b55d025a4 503 Gene3D G3DSA:3.40.50.150 260 495 2.7E-58 T 11-10-2018 APT56_21265 96f7f769a74cdddf4852e38b55d025a4 503 SUPERFAMILY SSF53335 207 475 4.88E-65 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_21265 96f7f769a74cdddf4852e38b55d025a4 503 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 218 481 22.308 T 11-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 APT56_21265 96f7f769a74cdddf4852e38b55d025a4 503 Pfam PF01564 Spermine/spermidine synthase domain 264 440 3.7E-29 T 11-10-2018 APT56_16915 e48935721abb59cdc01c23643cd9e29c 291 Gene3D G3DSA:3.80.10.10 48 290 1.7E-16 T 11-10-2018 IPR032675 Leucine-rich repeat domain superfamily APT56_16915 e48935721abb59cdc01c23643cd9e29c 291 SUPERFAMILY SSF52058 65 269 1.87E-12 T 11-10-2018 APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 PIRSF PIRSF036893 1 173 1.2E-61 T 11-10-2018 IPR022271 Lipocalin, ApoD type APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 SUPERFAMILY SSF50814 9 172 1.15E-47 T 11-10-2018 IPR012674 Calycin APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 Gene3D G3DSA:2.40.128.20 8 173 2.2E-56 T 11-10-2018 IPR012674 Calycin APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 Pfam PF08212 Lipocalin-like domain 32 172 1.1E-53 T 11-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 PRINTS PR01171 Bacterial lipocalin signature 102 116 3.5E-13 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 PRINTS PR01171 Bacterial lipocalin signature 119 127 3.5E-13 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 PRINTS PR01171 Bacterial lipocalin signature 32 46 3.5E-13 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 PRINTS PR01171 Bacterial lipocalin signature 134 145 3.5E-13 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 APT56_02445 e62e5b2d6bec654cae033f9f9ff95edc 173 ProSitePatterns PS00213 Lipocalin signature. 33 44 - T 11-10-2018 IPR022272 Lipocalin family conserved site APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 13 152 9.7E-62 T 11-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 SUPERFAMILY SSF46955 13 136 4.03E-29 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 Gene3D G3DSA:1.10.1660.10 4 137 4.1E-33 T 11-10-2018 APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 SMART SM00422 13 81 2.1E-23 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 Pfam PF00376 MerR family regulatory protein 14 50 2.9E-14 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 Pfam PF09278 MerR, DNA binding 56 121 1.4E-17 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 48 68 2.3E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 25 38 2.3E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_14165 57fcb7cff09a5a80bb8a3c31b01dc2d5 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 25 2.3E-10 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_18110 66f6251bb75e8a1ae7143e919a7e315f 671 Pfam PF04632 Fusaric acid resistance protein family 2 657 1.6E-128 T 11-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 APT56_20350 bf02fcea822a25a68062747401bd2098 263 SUPERFAMILY SSF161098 65 248 4.84E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_20350 bf02fcea822a25a68062747401bd2098 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 256 7.0E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_20350 bf02fcea822a25a68062747401bd2098 263 Gene3D G3DSA:1.10.3720.10 63 259 1.9E-19 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00260 26d4a84b11dc714adfe731449dbee510 308 Gene3D G3DSA:3.40.50.1100 43 152 2.2E-86 T 11-10-2018 APT56_00260 26d4a84b11dc714adfe731449dbee510 308 Gene3D G3DSA:3.40.50.1100 8 308 2.2E-86 T 11-10-2018 APT56_00260 26d4a84b11dc714adfe731449dbee510 308 SUPERFAMILY SSF53686 5 308 7.2E-77 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_00260 26d4a84b11dc714adfe731449dbee510 308 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 APT56_00260 26d4a84b11dc714adfe731449dbee510 308 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 303 8.5E-60 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_18615 2382d251797de4dc459b044ce6da170d 288 Gene3D G3DSA:3.20.20.140 8 288 5.3E-74 T 11-10-2018 APT56_18615 2382d251797de4dc459b044ce6da170d 288 Pfam PF04909 Amidohydrolase 23 286 1.7E-33 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_18615 2382d251797de4dc459b044ce6da170d 288 SUPERFAMILY SSF51556 19 286 1.13E-64 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 16 286 6.0E-62 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 Pfam PF00701 Dihydrodipicolinate synthetase family 9 286 4.5E-56 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 PIRSF PIRSF001365 5 296 1.3E-65 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 138 168 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 44 61 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 8.8E-18 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 8.8E-18 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 108 124 8.8E-18 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 8.8E-18 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 SUPERFAMILY SSF51569 10 286 2.72E-71 T 11-10-2018 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 SMART SM01130 8 290 2.2E-78 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_05670 88069694efb2ea70283fa03ebf30f74d 299 Gene3D G3DSA:3.20.20.70 4 289 1.1E-75 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_23125 5e629145e0e93e2f52c3ba29539dcb53 201 Pfam PF01569 PAP2 superfamily 59 168 4.4E-15 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT56_23125 5e629145e0e93e2f52c3ba29539dcb53 201 SMART SM00014 58 168 1.2E-9 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT56_23125 5e629145e0e93e2f52c3ba29539dcb53 201 Gene3D G3DSA:1.20.144.10 92 188 3.8E-18 T 11-10-2018 APT56_23125 5e629145e0e93e2f52c3ba29539dcb53 201 SUPERFAMILY SSF48317 3 174 3.79E-30 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily APT56_10970 7ff6998b65565e58d1d7749e91ce7622 313 Gene3D G3DSA:1.10.3720.10 84 305 3.8E-20 T 11-10-2018 IPR035906 MetI-like superfamily APT56_10970 7ff6998b65565e58d1d7749e91ce7622 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 312 1.1E-35 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_10970 7ff6998b65565e58d1d7749e91ce7622 313 SUPERFAMILY SSF161098 90 297 3.27E-15 T 11-10-2018 IPR035906 MetI-like superfamily APT56_17265 543d5e4e05ebf2010e5db87816c074cb 222 SMART SM00448 1 112 4.1E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17265 543d5e4e05ebf2010e5db87816c074cb 222 SMART SM00862 145 216 7.5E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_17265 543d5e4e05ebf2010e5db87816c074cb 222 SUPERFAMILY SSF52172 2 118 6.55E-34 T 11-10-2018 IPR011006 CheY-like superfamily APT56_17265 543d5e4e05ebf2010e5db87816c074cb 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 8.4E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_17265 543d5e4e05ebf2010e5db87816c074cb 222 Gene3D G3DSA:3.40.50.2300 1 121 4.2E-35 T 11-10-2018 APT56_17265 543d5e4e05ebf2010e5db87816c074cb 222 Gene3D G3DSA:1.10.10.10 122 220 2.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17265 543d5e4e05ebf2010e5db87816c074cb 222 Pfam PF00072 Response regulator receiver domain 3 112 3.0E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17265 543d5e4e05ebf2010e5db87816c074cb 222 SUPERFAMILY SSF46894 125 217 3.12E-23 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 Pfam PF02934 GatB/GatE catalytic domain 5 293 1.9E-110 T 11-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 Pfam PF02637 GatB domain 333 483 2.0E-51 T 11-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 483 1.5E-165 T 11-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 Gene3D G3DSA:1.10.10.410 423 485 3.4E-26 T 11-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 SUPERFAMILY SSF55931 4 300 1.83E-118 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 Gene3D G3DSA:1.10.150.380 301 422 2.1E-31 T 11-10-2018 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 148 162 - T 11-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 SUPERFAMILY SSF89095 301 407 2.88E-31 T 11-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 SMART SM00845 332 483 7.0E-78 T 11-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 APT56_26795 6636ff1d73067212ee731a14ef777e0f 485 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 484 37.816 T 11-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 APT56_15085 bb89e8d75e092d898b4016fe792a2a14 327 Pfam PF13343 Bacterial extracellular solute-binding protein 84 280 2.0E-31 T 11-10-2018 APT56_15085 bb89e8d75e092d898b4016fe792a2a14 327 Gene3D G3DSA:3.40.190.10 125 303 9.6E-73 T 11-10-2018 APT56_15085 bb89e8d75e092d898b4016fe792a2a14 327 SUPERFAMILY SSF53850 21 321 1.51E-60 T 11-10-2018 APT56_15085 bb89e8d75e092d898b4016fe792a2a14 327 PIRSF PIRSF002825 1 324 1.1E-75 T 11-10-2018 IPR026045 Ferric binding protein APT56_15085 bb89e8d75e092d898b4016fe792a2a14 327 Gene3D G3DSA:3.40.190.10 28 292 9.6E-73 T 11-10-2018 APT56_03250 1a14559ee0c6a3eaed107ef627d55071 592 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 381 587 4.0E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_03250 1a14559ee0c6a3eaed107ef627d55071 592 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 276 9.0E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_03250 1a14559ee0c6a3eaed107ef627d55071 592 SUPERFAMILY SSF161098 300 589 9.16E-39 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03250 1a14559ee0c6a3eaed107ef627d55071 592 Gene3D G3DSA:1.10.3720.10 304 590 2.2E-30 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03250 1a14559ee0c6a3eaed107ef627d55071 592 Gene3D G3DSA:1.10.3720.10 14 283 7.5E-46 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03250 1a14559ee0c6a3eaed107ef627d55071 592 SUPERFAMILY SSF161098 5 282 5.76E-47 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03220 7fbc36ec31da8b5c267cdfc68042c0a4 277 PIRSF PIRSF000903 3 274 7.0E-103 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 APT56_03220 7fbc36ec31da8b5c267cdfc68042c0a4 277 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 3 271 43.475 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 APT56_03220 7fbc36ec31da8b5c267cdfc68042c0a4 277 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 5 266 2.0E-72 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 APT56_03220 7fbc36ec31da8b5c267cdfc68042c0a4 277 Pfam PF00149 Calcineurin-like phosphoesterase 4 142 1.8E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_03220 7fbc36ec31da8b5c267cdfc68042c0a4 277 Gene3D G3DSA:3.60.21.10 4 275 1.2E-72 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_03220 7fbc36ec31da8b5c267cdfc68042c0a4 277 SUPERFAMILY SSF56300 2 258 3.14E-51 T 11-10-2018 APT56_25510 30548a776a9cacc6f18f4eb7898d33c4 319 Gene3D G3DSA:3.40.50.2300 128 316 1.5E-21 T 11-10-2018 APT56_25510 30548a776a9cacc6f18f4eb7898d33c4 319 Pfam PF13407 Periplasmic binding protein domain 30 287 1.6E-24 T 11-10-2018 IPR025997 Periplasmic binding protein APT56_25510 30548a776a9cacc6f18f4eb7898d33c4 319 Gene3D G3DSA:3.40.50.2300 21 116 1.6E-14 T 11-10-2018 APT56_25510 30548a776a9cacc6f18f4eb7898d33c4 319 SUPERFAMILY SSF53822 29 315 3.73E-38 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_19490 83d1ecc607d6913344296e6b3cc0c6c1 722 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 705 722 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APT56_19490 83d1ecc607d6913344296e6b3cc0c6c1 722 Gene3D G3DSA:2.170.130.10 55 178 8.3E-22 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_19490 83d1ecc607d6913344296e6b3cc0c6c1 722 Gene3D G3DSA:2.40.170.20 187 722 5.5E-79 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_19490 83d1ecc607d6913344296e6b3cc0c6c1 722 Pfam PF00593 TonB dependent receptor 256 720 1.0E-48 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_19490 83d1ecc607d6913344296e6b3cc0c6c1 722 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 167 1.7E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_19490 83d1ecc607d6913344296e6b3cc0c6c1 722 SUPERFAMILY SSF56935 66 722 1.71E-93 T 11-10-2018 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 Gene3D G3DSA:3.40.1440.10 4 102 3.9E-32 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 SUPERFAMILY SSF47781 521 608 3.18E-19 T 11-10-2018 IPR010994 RuvA domain 2-like APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 Pfam PF01541 GIY-YIG catalytic domain 19 93 1.1E-9 T 11-10-2018 IPR000305 GIY-YIG endonuclease APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 SUPERFAMILY SSF46600 190 242 2.75E-12 T 11-10-2018 IPR036876 UVR domain superfamily APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 Gene3D G3DSA:3.30.420.340 379 541 2.1E-45 T 11-10-2018 IPR038476 UvrC homology region 2 superfamily APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 606 26.924 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 Gene3D G3DSA:1.10.150.20 554 609 4.3E-21 T 11-10-2018 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 SMART SM00465 17 98 4.7E-17 T 11-10-2018 IPR000305 GIY-YIG endonuclease APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 Pfam PF14520 Helix-hairpin-helix domain 556 608 1.3E-8 T 11-10-2018 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 SMART SM00278 555 574 15.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 SMART SM00278 587 606 0.065 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 Pfam PF02151 UvrB/uvrC motif 206 235 1.2E-6 T 11-10-2018 IPR001943 UVR domain GO:0005515 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 7 588 2.8E-166 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 SUPERFAMILY SSF82771 17 100 9.68E-22 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 APT56_21175 a7afe71b0eb5390b02af51ca023fd73b 609 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 394 541 8.6E-46 T 11-10-2018 IPR001162 UvrC family homology region APT56_04185 eb895502113b8170f11a80497c178c0a 154 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 10 145 6.3E-24 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 APT56_10520 028f9590e0b4a0eb90f53784bb95a0b7 808 Gene3D G3DSA:1.25.40.10 60 224 1.5E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_10520 028f9590e0b4a0eb90f53784bb95a0b7 808 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 6 808 1.6E-243 T 11-10-2018 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:1901515 APT56_10520 028f9590e0b4a0eb90f53784bb95a0b7 808 SMART SM00028 85 118 1.6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_10520 028f9590e0b4a0eb90f53784bb95a0b7 808 SMART SM00028 153 186 0.55 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_10520 028f9590e0b4a0eb90f53784bb95a0b7 808 SUPERFAMILY SSF48452 85 197 6.64E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_10520 028f9590e0b4a0eb90f53784bb95a0b7 808 Pfam PF13429 Tetratricopeptide repeat 89 212 8.9E-10 T 11-10-2018 APT56_27375 66542c8af70e0c68f72f8b1206541ff7 692 Pfam PF00534 Glycosyl transferases group 1 219 382 2.0E-18 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_27375 66542c8af70e0c68f72f8b1206541ff7 692 Gene3D G3DSA:3.40.50.2000 209 383 8.0E-31 T 11-10-2018 APT56_27375 66542c8af70e0c68f72f8b1206541ff7 692 Gene3D G3DSA:3.40.50.2000 2 204 2.3E-6 T 11-10-2018 APT56_27375 66542c8af70e0c68f72f8b1206541ff7 692 SUPERFAMILY SSF53756 4 382 2.77E-41 T 11-10-2018 APT56_12425 3d475ea8c4fa1fccd9af0cce4c12cf57 332 Gene3D G3DSA:2.40.30.160 201 317 1.3E-29 T 11-10-2018 APT56_12425 3d475ea8c4fa1fccd9af0cce4c12cf57 332 SUPERFAMILY SSF103025 17 247 8.32E-49 T 11-10-2018 APT56_12425 3d475ea8c4fa1fccd9af0cce4c12cf57 332 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 192 253 6.7E-27 T 11-10-2018 IPR017703 YgfZ/GcvT conserved site APT56_12425 3d475ea8c4fa1fccd9af0cce4c12cf57 332 Gene3D G3DSA:3.30.70.1400 24 115 1.5E-20 T 11-10-2018 APT56_17215 c939a66a592ef6d594d2aa91eff429d7 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 322 1.2E-69 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17215 c939a66a592ef6d594d2aa91eff429d7 330 Gene3D G3DSA:3.40.190.10 128 251 5.7E-98 T 11-10-2018 APT56_17215 c939a66a592ef6d594d2aa91eff429d7 330 SUPERFAMILY SSF53850 117 281 9.41E-7 T 11-10-2018 APT56_17215 c939a66a592ef6d594d2aa91eff429d7 330 PIRSF PIRSF017082 3 325 1.1E-71 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17215 c939a66a592ef6d594d2aa91eff429d7 330 Gene3D G3DSA:3.40.190.150 31 316 5.7E-98 T 11-10-2018 APT56_25805 c74325e0e10be62576ee213c04aae05e 176 Pfam PF02834 LigT like Phosphoesterase 11 88 1.4E-12 T 11-10-2018 IPR014051 Phosphoesterase, HXTX APT56_25805 c74325e0e10be62576ee213c04aae05e 176 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 4 173 17.819 T 11-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 APT56_25805 c74325e0e10be62576ee213c04aae05e 176 SUPERFAMILY SSF55144 5 170 2.27E-38 T 11-10-2018 IPR009097 Cyclic phosphodiesterase APT56_25805 c74325e0e10be62576ee213c04aae05e 176 Gene3D G3DSA:3.90.1140.10 2 172 7.7E-44 T 11-10-2018 APT56_25805 c74325e0e10be62576ee213c04aae05e 176 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 5 170 5.4E-34 T 11-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 APT56_08985 d28e327bddf71ed29f4398081780ad07 269 SUPERFAMILY SSF161098 7 264 4.86E-54 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08985 d28e327bddf71ed29f4398081780ad07 269 Gene3D G3DSA:1.10.3720.10 13 266 2.2E-46 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08985 d28e327bddf71ed29f4398081780ad07 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 260 1.2E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_19600 c4022908bbf1d1463fee59fd625e1e93 367 Pfam PF13378 Enolase C-terminal domain-like 150 353 1.2E-66 T 11-10-2018 IPR029065 Enolase C-terminal domain-like APT56_19600 c4022908bbf1d1463fee59fd625e1e93 367 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 22 127 4.4E-21 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain APT56_19600 c4022908bbf1d1463fee59fd625e1e93 367 SUPERFAMILY SSF51604 115 360 2.36E-76 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_19600 c4022908bbf1d1463fee59fd625e1e93 367 SMART SM00922 147 244 1.4E-26 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal APT56_19600 c4022908bbf1d1463fee59fd625e1e93 367 Gene3D G3DSA:3.30.390.10 1 123 3.6E-27 T 11-10-2018 IPR029017 Enolase-like, N-terminal APT56_19600 c4022908bbf1d1463fee59fd625e1e93 367 SUPERFAMILY SSF54826 3 128 3.98E-30 T 11-10-2018 APT56_19600 c4022908bbf1d1463fee59fd625e1e93 367 Gene3D G3DSA:3.20.20.120 124 351 1.4E-81 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APT56_26450 fa0b784fbcd584fde9b82979f42e3a42 229 SUPERFAMILY SSF52172 1 125 4.27E-38 T 11-10-2018 IPR011006 CheY-like superfamily APT56_26450 fa0b784fbcd584fde9b82979f42e3a42 229 Gene3D G3DSA:3.40.50.2300 1 127 1.5E-34 T 11-10-2018 APT56_26450 fa0b784fbcd584fde9b82979f42e3a42 229 SUPERFAMILY SSF46689 160 221 8.6E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_26450 fa0b784fbcd584fde9b82979f42e3a42 229 Gene3D G3DSA:1.10.10.60 167 224 6.2E-13 T 11-10-2018 APT56_26450 fa0b784fbcd584fde9b82979f42e3a42 229 SMART SM00448 2 114 8.3E-33 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_26450 fa0b784fbcd584fde9b82979f42e3a42 229 Pfam PF00072 Response regulator receiver domain 4 114 4.8E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24190 68827e37032fbf4293297874bd834470 450 SMART SM00388 232 300 1.6E-7 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_24190 68827e37032fbf4293297874bd834470 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 4.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24190 68827e37032fbf4293297874bd834470 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 409 4.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24190 68827e37032fbf4293297874bd834470 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 446 4.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24190 68827e37032fbf4293297874bd834470 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 4.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APT56_24190 68827e37032fbf4293297874bd834470 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 344 446 1.9E-12 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_24190 68827e37032fbf4293297874bd834470 450 Gene3D G3DSA:1.10.287.130 211 294 3.1E-16 T 11-10-2018 APT56_24190 68827e37032fbf4293297874bd834470 450 SUPERFAMILY SSF55874 305 446 2.62E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_24190 68827e37032fbf4293297874bd834470 450 Gene3D G3DSA:3.30.565.10 299 449 3.0E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_24190 68827e37032fbf4293297874bd834470 450 SUPERFAMILY SSF47384 223 296 2.55E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APT56_24190 68827e37032fbf4293297874bd834470 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 295 5.7E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APT56_24190 68827e37032fbf4293297874bd834470 450 SMART SM00387 343 449 4.9E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_23005 6cd252545785dd9b29f386919ea48e30 150 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 22 148 4.6E-32 T 11-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 APT56_23005 6cd252545785dd9b29f386919ea48e30 150 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 126 142 - T 11-10-2018 IPR028871 Blue (type 1) copper protein, binding site APT56_23005 6cd252545785dd9b29f386919ea48e30 150 SUPERFAMILY SSF49503 22 148 1.51E-47 T 11-10-2018 IPR008972 Cupredoxin APT56_23005 6cd252545785dd9b29f386919ea48e30 150 TIGRFAM TIGR02695 azurin: azurin 24 148 1.7E-62 T 11-10-2018 IPR014068 Azurin APT56_23005 6cd252545785dd9b29f386919ea48e30 150 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 28 146 2.0E-65 T 11-10-2018 APT56_23005 6cd252545785dd9b29f386919ea48e30 150 Gene3D G3DSA:2.60.40.420 22 149 9.1E-49 T 11-10-2018 IPR008972 Cupredoxin APT56_12490 c0b044574bc6fab16dc967e871a3088e 272 Gene3D G3DSA:3.30.565.40 45 176 3.8E-21 T 11-10-2018 APT56_12490 c0b044574bc6fab16dc967e871a3088e 272 Pfam PF11738 Protein of unknown function (DUF3298) 209 258 1.3E-11 T 11-10-2018 IPR021729 Domain of unknown function DUF3298 APT56_12490 c0b044574bc6fab16dc967e871a3088e 272 Gene3D G3DSA:3.90.640.20 177 272 5.5E-26 T 11-10-2018 IPR037126 PdaC/RsiV-like superfamily APT56_12215 101d1cfdf9672ed9a740ccb30f501778 175 Pfam PF06042 Nucleotidyltransferase 6 169 6.3E-52 T 11-10-2018 IPR009267 Putative nucleotidyltransferase APT56_24910 e1c6da6f92bacd57b4a19062d20a4a8c 200 SUPERFAMILY SSF48498 86 196 2.03E-7 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_24910 e1c6da6f92bacd57b4a19062d20a4a8c 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.4E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_24910 e1c6da6f92bacd57b4a19062d20a4a8c 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.4E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_24910 e1c6da6f92bacd57b4a19062d20a4a8c 200 SUPERFAMILY SSF46689 4 84 4.94E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_24910 e1c6da6f92bacd57b4a19062d20a4a8c 200 Gene3D G3DSA:1.10.357.10 10 199 5.1E-37 T 11-10-2018 APT56_24910 e1c6da6f92bacd57b4a19062d20a4a8c 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.3E-16 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_03825 fa7fb1ee439d34d0f8221802aff7f980 822 SUPERFAMILY SSF103473 429 819 7.85E-40 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_03825 fa7fb1ee439d34d0f8221802aff7f980 822 Pfam PF07690 Major Facilitator Superfamily 433 752 9.5E-23 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_03825 fa7fb1ee439d34d0f8221802aff7f980 822 Gene3D G3DSA:1.20.1250.20 428 814 2.7E-31 T 11-10-2018 APT56_21880 970e3f702d08f3e0897d8e9d39b73612 281 Pfam PF00809 Pterin binding enzyme 20 259 6.7E-84 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_21880 970e3f702d08f3e0897d8e9d39b73612 281 SUPERFAMILY SSF51717 6 274 1.83E-99 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_21880 970e3f702d08f3e0897d8e9d39b73612 281 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 53 66 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_21880 970e3f702d08f3e0897d8e9d39b73612 281 Gene3D G3DSA:3.20.20.20 1 279 4.1E-110 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_21880 970e3f702d08f3e0897d8e9d39b73612 281 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 19 273 4.8E-99 T 11-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 APT56_21880 970e3f702d08f3e0897d8e9d39b73612 281 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 19 34 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APT56_09645 8f998f666ce93f04cbcd3a59cf5eb9e9 279 SMART SM00858 49 113 2.6E-5 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_09645 8f998f666ce93f04cbcd3a59cf5eb9e9 279 Pfam PF08666 SAF domain 52 109 1.9E-7 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_09645 8f998f666ce93f04cbcd3a59cf5eb9e9 279 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 16 242 2.5E-34 T 11-10-2018 IPR017592 Pilus assembly, Flp-type CpaB APT56_09645 8f998f666ce93f04cbcd3a59cf5eb9e9 279 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 122 218 5.5E-13 T 11-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain APT56_09645 8f998f666ce93f04cbcd3a59cf5eb9e9 279 Gene3D G3DSA:3.90.1210.10 50 122 4.2E-5 T 11-10-2018 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 SUPERFAMILY SSF103473 4 384 1.31E-55 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 Gene3D G3DSA:1.20.1250.20 1 385 2.2E-61 T 11-10-2018 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 300 320 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 218 235 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 102 123 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 247 267 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 132 154 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 275 296 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 44 63 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 75 99 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 160 180 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 335 358 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 365 384 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 PRINTS PR01035 Tetracycline resistance protein signature 15 31 1.2E-129 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 Pfam PF07690 Major Facilitator Superfamily 9 254 1.5E-33 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_11200 89bb01e4ee2c88995615a0df94f06547 390 ProSitePatterns PS00216 Sugar transport proteins signature 1. 62 78 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_10595 f25c0633fbcc2c5f0a40a842e682a4c0 198 Gene3D G3DSA:2.50.20.10 21 192 7.6E-15 T 11-10-2018 APT56_10595 f25c0633fbcc2c5f0a40a842e682a4c0 198 SUPERFAMILY SSF89392 22 179 5.49E-8 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 Gene3D G3DSA:1.10.1660.10 1 127 1.8E-33 T 11-10-2018 APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 128 2.9E-48 T 11-10-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.8E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.8E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.8E-11 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 SUPERFAMILY SSF46955 1 113 1.25E-32 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 SMART SM00422 1 70 3.2E-24 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 Pfam PF00376 MerR family regulatory protein 2 39 2.5E-15 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_11535 39eb4112772c380355e2ee2c862f39f9 144 Pfam PF09278 MerR, DNA binding 44 108 1.1E-18 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding APT56_27725 7f05c17ab6b7e14dc581b025602ea05d 101 SUPERFAMILY SSF57716 2 101 3.85E-39 T 11-10-2018 APT56_27725 7f05c17ab6b7e14dc581b025602ea05d 101 Gene3D G3DSA:4.10.830.10 39 101 2.1E-25 T 11-10-2018 APT56_27725 7f05c17ab6b7e14dc581b025602ea05d 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 27.559 T 11-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid APT56_27725 7f05c17ab6b7e14dc581b025602ea05d 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.1E-28 T 11-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_08700 42529351522a6e618982d0f8e76ddb44 110 Pfam PF05957 Bacterial protein of unknown function (DUF883) 16 109 1.7E-23 T 11-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 APT56_26720 00629814724a99938b8c946c70eeeee1 248 SMART SM00749 136 199 3.1 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria APT56_26720 00629814724a99938b8c946c70eeeee1 248 SMART SM00749 60 121 19.0 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria APT56_26720 00629814724a99938b8c946c70eeeee1 248 Pfam PF04972 BON domain 64 122 4.4E-13 T 11-10-2018 IPR007055 BON domain APT56_26720 00629814724a99938b8c946c70eeeee1 248 Pfam PF04972 BON domain 131 194 4.9E-11 T 11-10-2018 IPR007055 BON domain APT56_11770 259a95f59ee4cfbda4efcd78cc185db3 206 SUPERFAMILY SSF64288 11 188 1.89E-42 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_11770 259a95f59ee4cfbda4efcd78cc185db3 206 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 13 189 24.494 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 APT56_11770 259a95f59ee4cfbda4efcd78cc185db3 206 Pfam PF04345 Chorismate lyase 23 188 1.1E-20 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 APT56_11770 259a95f59ee4cfbda4efcd78cc185db3 206 Gene3D G3DSA:3.40.1410.10 6 187 2.7E-36 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APT56_11405 32fba9f00e0d139db9091c9dfce24b4a 445 SUPERFAMILY SSF103473 6 430 1.44E-75 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_11405 32fba9f00e0d139db9091c9dfce24b4a 445 Gene3D G3DSA:1.20.1250.20 3 208 5.2E-40 T 11-10-2018 APT56_11405 32fba9f00e0d139db9091c9dfce24b4a 445 Pfam PF07690 Major Facilitator Superfamily 19 395 6.3E-50 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_11405 32fba9f00e0d139db9091c9dfce24b4a 445 Gene3D G3DSA:1.20.1250.20 234 430 2.8E-33 T 11-10-2018 APT56_11405 32fba9f00e0d139db9091c9dfce24b4a 445 PIRSF PIRSF002808 1 436 1.3E-33 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 APT56_05575 98f3152624f0463726ed89f0c99790e4 363 Pfam PF00762 Ferrochelatase 35 353 1.3E-110 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT56_05575 98f3152624f0463726ed89f0c99790e4 363 Gene3D G3DSA:3.40.50.1400 197 335 3.3E-96 T 11-10-2018 APT56_05575 98f3152624f0463726ed89f0c99790e4 363 SUPERFAMILY SSF53800 34 359 3.79E-105 T 11-10-2018 APT56_05575 98f3152624f0463726ed89f0c99790e4 363 Gene3D G3DSA:3.40.50.1400 37 354 3.3E-96 T 11-10-2018 APT56_05575 98f3152624f0463726ed89f0c99790e4 363 Hamap MF_00323 Ferrochelatase [hemH]. 34 354 38.217 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT56_05575 98f3152624f0463726ed89f0c99790e4 363 ProSitePatterns PS00534 Ferrochelatase signature. 223 242 - T 11-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT56_05575 98f3152624f0463726ed89f0c99790e4 363 TIGRFAM TIGR00109 hemH: ferrochelatase 34 353 4.2E-90 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 Gene3D G3DSA:1.10.3860.10 1 417 1.7E-121 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 5.4E-42 T 11-10-2018 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 5.4E-42 T 11-10-2018 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 5.4E-42 T 11-10-2018 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 5.4E-42 T 11-10-2018 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 5.4E-42 T 11-10-2018 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 5.4E-42 T 11-10-2018 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 PRINTS PR00173 Glutamate-aspartate symporter signature 196 215 5.4E-42 T 11-10-2018 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 5.4E-42 T 11-10-2018 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 Pfam PF00375 Sodium:dicarboxylate symporter family 9 404 9.7E-112 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APT56_22365 6a080ba462c36d61b3c7819368857fee 428 SUPERFAMILY SSF118215 6 405 1.28E-114 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 APT56_19380 8c76ee5782b397d9e1147598a2aaec7d 311 Pfam PF06719 AraC-type transcriptional regulator N-terminus 35 185 1.3E-42 T 11-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal APT56_19380 8c76ee5782b397d9e1147598a2aaec7d 311 Pfam PF12833 Helix-turn-helix domain 221 295 7.6E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_19380 8c76ee5782b397d9e1147598a2aaec7d 311 SMART SM00342 215 298 2.0E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_19380 8c76ee5782b397d9e1147598a2aaec7d 311 SUPERFAMILY SSF46689 251 296 4.93E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_19380 8c76ee5782b397d9e1147598a2aaec7d 311 Gene3D G3DSA:1.10.10.60 194 300 5.6E-27 T 11-10-2018 APT56_19380 8c76ee5782b397d9e1147598a2aaec7d 311 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 252 294 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_19380 8c76ee5782b397d9e1147598a2aaec7d 311 SUPERFAMILY SSF46689 199 248 2.78E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_24860 059fe1d0bef04ff76fe29dfbe1fc9c5c 176 Pfam PF03724 META domain 46 167 2.0E-24 T 11-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ APT56_24860 059fe1d0bef04ff76fe29dfbe1fc9c5c 176 Gene3D G3DSA:2.40.128.270 43 172 2.1E-36 T 11-10-2018 IPR038670 HslJ-like superfamily APT56_00070 05af6cbb56a418e8ce35cce8227499df 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 374 1.5E-116 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 APT56_00070 05af6cbb56a418e8ce35cce8227499df 387 SUPERFAMILY SSF56796 6 385 1.7E-123 T 11-10-2018 APT56_00070 05af6cbb56a418e8ce35cce8227499df 387 Gene3D G3DSA:3.40.50.1970 2 191 7.6E-56 T 11-10-2018 APT56_00070 05af6cbb56a418e8ce35cce8227499df 387 Gene3D G3DSA:1.20.1090.10 193 386 6.3E-56 T 11-10-2018 APT56_00070 05af6cbb56a418e8ce35cce8227499df 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 180 208 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APT56_00900 5d00a75c8d673b5976178fa77598a7e2 238 Pfam PF05036 Sporulation related domain 162 236 2.1E-14 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 APT56_00900 5d00a75c8d673b5976178fa77598a7e2 238 Gene3D G3DSA:3.30.70.1070 159 238 1.1E-15 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APT56_00900 5d00a75c8d673b5976178fa77598a7e2 238 SUPERFAMILY SSF110997 162 237 3.01E-17 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APT56_09455 5958e144223baed9db10b0b4d23da437 86 SUPERFAMILY SSF54565 1 76 1.22E-27 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09455 5958e144223baed9db10b0b4d23da437 86 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 22.912 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09455 5958e144223baed9db10b0b4d23da437 86 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 77 5.5E-27 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09455 5958e144223baed9db10b0b4d23da437 86 Pfam PF00886 Ribosomal protein S16 8 68 8.9E-24 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09455 5958e144223baed9db10b0b4d23da437 86 Gene3D G3DSA:3.30.1320.10 1 84 2.7E-29 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_09260 231ff9c070a7760c40f1c41874fedff3 296 Pfam PF00892 EamA-like transporter family 148 277 8.0E-22 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_09260 231ff9c070a7760c40f1c41874fedff3 296 Pfam PF00892 EamA-like transporter family 7 136 4.3E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_09260 231ff9c070a7760c40f1c41874fedff3 296 SUPERFAMILY SSF103481 38 137 6.8E-9 T 11-10-2018 APT56_09260 231ff9c070a7760c40f1c41874fedff3 296 SUPERFAMILY SSF103481 182 282 3.66E-17 T 11-10-2018 APT56_03650 4463c78887be45da218342a97e5765ad 88 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 15 86 8.9E-14 T 11-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 APT56_03650 4463c78887be45da218342a97e5765ad 88 SUPERFAMILY SSF140129 9 82 1.31E-8 T 11-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 APT56_07765 0e75b06f487966a59a4bbea96474f71a 254 Gene3D G3DSA:1.20.1260.10 1 254 1.4E-100 T 11-10-2018 IPR012347 Ferritin-like APT56_07765 0e75b06f487966a59a4bbea96474f71a 254 SUPERFAMILY SSF47240 3 248 6.08E-81 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_07765 0e75b06f487966a59a4bbea96474f71a 254 PIRSF PIRSF037834 1 254 8.6E-100 T 11-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 APT56_07765 0e75b06f487966a59a4bbea96474f71a 254 Pfam PF05138 Phenylacetic acid catabolic protein 3 254 6.2E-96 T 11-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 APT56_07765 0e75b06f487966a59a4bbea96474f71a 254 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 12 254 2.9E-86 T 11-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 APT56_25695 047f9d3062dc5a87f537637f228c5967 284 SMART SM00530 11 83 1.2E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_25695 047f9d3062dc5a87f537637f228c5967 284 Pfam PF13560 Helix-turn-helix domain 7 86 8.5E-17 T 11-10-2018 APT56_25695 047f9d3062dc5a87f537637f228c5967 284 Gene3D G3DSA:1.10.260.40 12 85 1.4E-5 T 11-10-2018 APT56_25695 047f9d3062dc5a87f537637f228c5967 284 Gene3D G3DSA:3.30.450.180 107 281 1.7E-11 T 11-10-2018 APT56_25695 047f9d3062dc5a87f537637f228c5967 284 SUPERFAMILY SSF47413 31 81 9.6E-6 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_16225 06aa4c84abf204db09dc6c9490945589 327 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 13 140 2.1E-25 T 11-10-2018 IPR017748 T6S-associated protein TagF APT56_16225 06aa4c84abf204db09dc6c9490945589 327 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 12 145 2.4E-35 T 11-10-2018 IPR017748 T6S-associated protein TagF APT56_16225 06aa4c84abf204db09dc6c9490945589 327 Gene3D G3DSA:3.40.1730.10 10 181 2.9E-18 T 11-10-2018 IPR038225 T6S-associated protein TagF superfamily APT56_19180 4ab44c8cda48744f63658d35a361461e 232 SMART SM00965 62 113 1.0E-10 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_19180 4ab44c8cda48744f63658d35a361461e 232 SUPERFAMILY SSF74653 115 205 7.72E-8 T 11-10-2018 APT56_19180 4ab44c8cda48744f63658d35a361461e 232 Gene3D G3DSA:3.55.50.30 38 119 8.2E-23 T 11-10-2018 APT56_00345 ddc6a3fbcb85707bd75a02d09f271573 250 SUPERFAMILY SSF161098 24 222 5.1E-39 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00345 ddc6a3fbcb85707bd75a02d09f271573 250 Gene3D G3DSA:1.10.3720.10 15 238 2.6E-48 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00345 ddc6a3fbcb85707bd75a02d09f271573 250 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 23 131 1.3E-17 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_00345 ddc6a3fbcb85707bd75a02d09f271573 250 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 236 3.2E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 17 310 4.2E-118 T 11-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 SMART SM00047 158 318 4.1E-45 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 Pfam PF10135 Rod binding protein 59 105 2.5E-12 T 11-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal APT56_12020 57772dfbe400ae8323fb8959876c6880 327 Gene3D G3DSA:1.10.530.10 168 307 4.3E-48 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 175 310 7.8E-21 T 11-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 62 82 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 187 205 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 207 228 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 293 311 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 229 250 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 273 292 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 37 60 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 163 186 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 PRINTS PR01002 Flagellar protein FlgJ signature 251 272 1.9E-59 T 11-10-2018 APT56_12020 57772dfbe400ae8323fb8959876c6880 327 Gene3D G3DSA:2.10.70.40 202 254 4.3E-48 T 11-10-2018 APT56_02410 d784d2157e5f355533add8f62540c9c8 230 Gene3D G3DSA:3.40.50.300 1 230 8.2E-55 T 11-10-2018 APT56_02410 d784d2157e5f355533add8f62540c9c8 230 SMART SM00382 26 207 2.5E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_02410 d784d2157e5f355533add8f62540c9c8 230 SUPERFAMILY SSF52540 2 227 1.65E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02410 d784d2157e5f355533add8f62540c9c8 230 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_02410 d784d2157e5f355533add8f62540c9c8 230 Pfam PF00005 ABC transporter 20 158 1.8E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_12100 00024b3bbb0bdf9a305d26366edece95 149 PIRSF PIRSF019404 1 148 6.6E-49 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 APT56_12100 00024b3bbb0bdf9a305d26366edece95 149 PRINTS PR01004 Flagellar FliJ protein signature 108 126 5.4E-14 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 APT56_12100 00024b3bbb0bdf9a305d26366edece95 149 PRINTS PR01004 Flagellar FliJ protein signature 44 61 5.4E-14 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 APT56_12100 00024b3bbb0bdf9a305d26366edece95 149 PRINTS PR01004 Flagellar FliJ protein signature 63 84 5.4E-14 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 APT56_12100 00024b3bbb0bdf9a305d26366edece95 149 PRINTS PR01004 Flagellar FliJ protein signature 4 26 5.4E-14 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 APT56_12100 00024b3bbb0bdf9a305d26366edece95 149 PRINTS PR01004 Flagellar FliJ protein signature 126 146 5.4E-14 T 11-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 APT56_12100 00024b3bbb0bdf9a305d26366edece95 149 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 144 8.8E-31 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 APT56_12100 00024b3bbb0bdf9a305d26366edece95 149 Pfam PF02050 Flagellar FliJ protein 19 141 4.6E-35 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 ProSitePatterns PS00519 AsnC-type HTH domain signature. 26 52 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 SMART SM00344 8 117 4.5E-36 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 3.4E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 3.4E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 3.4E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 SUPERFAMILY SSF54909 68 155 6.17E-16 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 Gene3D G3DSA:1.10.10.10 3 61 1.1E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 Gene3D G3DSA:3.30.70.920 62 143 2.9E-19 T 11-10-2018 APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 Pfam PF13412 Winged helix-turn-helix DNA-binding 9 55 2.3E-17 T 11-10-2018 APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 Pfam PF01037 Lrp/AsnC ligand binding domain 74 134 1.2E-14 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_18690 8e2682a65ca8ee2b8ed1808af702b6e8 166 SUPERFAMILY SSF46785 8 98 6.16E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_01150 a154932e40a9242f220fa6dc5d35d8eb 152 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 7 150 23.268 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 APT56_01150 a154932e40a9242f220fa6dc5d35d8eb 152 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 7 149 3.2E-41 T 11-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L APT56_01150 a154932e40a9242f220fa6dc5d35d8eb 152 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 100 108 3.1E-8 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 APT56_01150 a154932e40a9242f220fa6dc5d35d8eb 152 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 109 118 3.1E-8 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 APT56_01150 a154932e40a9242f220fa6dc5d35d8eb 152 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 10 24 3.1E-8 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 APT56_01150 a154932e40a9242f220fa6dc5d35d8eb 152 SUPERFAMILY SSF81330 17 145 1.14E-31 T 11-10-2018 IPR036019 Gated mechanosensitive channel APT56_01150 a154932e40a9242f220fa6dc5d35d8eb 152 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 7 151 1.4E-35 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 APT56_01150 a154932e40a9242f220fa6dc5d35d8eb 152 Gene3D G3DSA:1.10.1200.120 7 152 6.6E-39 T 11-10-2018 IPR036019 Gated mechanosensitive channel APT56_06720 5c9998caa1f6399e866dd49a583f74e7 182 Gene3D G3DSA:2.40.160.20 35 181 1.4E-39 T 11-10-2018 APT56_06720 5c9998caa1f6399e866dd49a583f74e7 182 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 59 180 6.9E-32 T 11-10-2018 IPR018550 Lipid A 3-O-deacylase-related APT56_06720 5c9998caa1f6399e866dd49a583f74e7 182 PIRSF PIRSF029681 1 182 2.1E-52 T 11-10-2018 IPR018550 Lipid A 3-O-deacylase-related APT56_06720 5c9998caa1f6399e866dd49a583f74e7 182 SUPERFAMILY SSF56925 30 182 1.49E-10 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APT56_10780 b4ff26bec6fc3c675ce4bb90170b491b 207 Pfam PF01810 LysE type translocator 15 202 6.0E-29 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_10780 b4ff26bec6fc3c675ce4bb90170b491b 207 PIRSF PIRSF006324 1 206 1.3E-50 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_14060 70c37fb37a90e960bcb0c757fc51e06f 484 Gene3D G3DSA:2.30.40.10 8 464 1.4E-251 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_14060 70c37fb37a90e960bcb0c757fc51e06f 484 Gene3D G3DSA:3.30.1490.130 289 345 1.4E-251 T 11-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 APT56_14060 70c37fb37a90e960bcb0c757fc51e06f 484 Gene3D G3DSA:3.20.20.140 62 415 1.4E-251 T 11-10-2018 APT56_14060 70c37fb37a90e960bcb0c757fc51e06f 484 SUPERFAMILY SSF51338 9 477 8.41E-19 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_14060 70c37fb37a90e960bcb0c757fc51e06f 484 SUPERFAMILY SSF51556 63 420 8.16E-90 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_14060 70c37fb37a90e960bcb0c757fc51e06f 484 Pfam PF07969 Amidohydrolase family 53 253 2.4E-19 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_14060 70c37fb37a90e960bcb0c757fc51e06f 484 Pfam PF07969 Amidohydrolase family 319 464 2.3E-15 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_02935 bb833bcf707b77d67561cf25621b4d04 509 SUPERFAMILY SSF56954 11 486 4.97E-112 T 11-10-2018 APT56_02935 bb833bcf707b77d67561cf25621b4d04 509 Pfam PF02321 Outer membrane efflux protein 80 274 5.7E-28 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_02935 bb833bcf707b77d67561cf25621b4d04 509 Pfam PF02321 Outer membrane efflux protein 300 481 4.3E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_02935 bb833bcf707b77d67561cf25621b4d04 509 Gene3D G3DSA:2.20.200.10 116 372 8.0E-131 T 11-10-2018 APT56_02935 bb833bcf707b77d67561cf25621b4d04 509 Gene3D G3DSA:1.20.1600.10 69 484 8.0E-131 T 11-10-2018 APT56_02935 bb833bcf707b77d67561cf25621b4d04 509 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 21 483 3.3E-135 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_07965 047c53cbd661aa87a093cffa3175bdbb 279 Pfam PF02535 ZIP Zinc transporter 91 250 5.5E-24 T 11-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 APT56_13825 39021adac2e6ab01e5d5b0dd1d00056b 148 Pfam PF09361 Phasin protein 10 102 2.3E-5 T 11-10-2018 IPR018968 Phasin APT56_01940 b97fcce7f92be74f26da38e14350924b 215 SUPERFAMILY SSF81342 6 211 2.0E-53 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT56_01940 b97fcce7f92be74f26da38e14350924b 215 Gene3D G3DSA:1.20.950.20 5 215 2.8E-64 T 11-10-2018 APT56_01940 b97fcce7f92be74f26da38e14350924b 215 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 9 207 2.6E-60 T 11-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 APT56_01940 b97fcce7f92be74f26da38e14350924b 215 Pfam PF01292 Prokaryotic cytochrome b561 12 189 3.8E-26 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APT56_15705 b738806ba45769cd23ab11355a43fdb0 226 Gene3D G3DSA:3.50.30.100 6 199 1.5E-53 T 11-10-2018 APT56_15705 b738806ba45769cd23ab11355a43fdb0 226 SUPERFAMILY SSF89562 27 187 1.57E-44 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily APT56_15705 b738806ba45769cd23ab11355a43fdb0 226 Pfam PF03737 Aldolase/RraA 30 177 4.9E-43 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein APT56_09835 bc79ccdba035428eab2e126f39fcb714 99 Pfam PF05154 TM2 domain 10 73 1.2E-14 T 11-10-2018 IPR007829 TM2 domain APT56_26180 c2b12f850e146285ae640f5b7a2e1278 298 Pfam PF00892 EamA-like transporter family 155 282 7.9E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_26180 c2b12f850e146285ae640f5b7a2e1278 298 SUPERFAMILY SSF103481 202 285 1.83E-7 T 11-10-2018 APT56_26180 c2b12f850e146285ae640f5b7a2e1278 298 SUPERFAMILY SSF103481 52 143 4.32E-6 T 11-10-2018 APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 Gene3D G3DSA:3.40.50.720 1 225 1.1E-48 T 11-10-2018 APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 2.6E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 2.6E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 2.6E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 Pfam PF00106 short chain dehydrogenase 7 185 4.4E-29 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 SUPERFAMILY SSF51735 1 206 6.16E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 4.9E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.9E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 4.9E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 4.9E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 4.9E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11760 6d0ceb86b57e25acbc98a45852f6eb4a 232 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_23355 def8225fe5f184c4c6f7b7b6ffe098c5 684 Pfam PF00593 TonB dependent receptor 214 679 2.2E-47 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_23355 def8225fe5f184c4c6f7b7b6ffe098c5 684 Gene3D G3DSA:2.170.130.10 9 151 8.8E-22 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_23355 def8225fe5f184c4c6f7b7b6ffe098c5 684 SUPERFAMILY SSF56935 8 684 2.2E-115 T 11-10-2018 APT56_23355 def8225fe5f184c4c6f7b7b6ffe098c5 684 Pfam PF07715 TonB-dependent Receptor Plug Domain 32 142 1.0E-19 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_23355 def8225fe5f184c4c6f7b7b6ffe098c5 684 Gene3D G3DSA:2.40.170.20 165 684 3.2E-92 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 Gene3D G3DSA:3.30.70.920 59 146 7.7E-26 T 11-10-2018 APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 SUPERFAMILY SSF46785 5 65 1.12E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 SMART SM00344 6 118 3.6E-43 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 Gene3D G3DSA:1.10.10.10 7 58 5.5E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 SUPERFAMILY SSF54909 66 157 1.61E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 6.6E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 6.6E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 6.6E-18 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 6.9E-22 T 11-10-2018 APT56_04235 aca08c68fc8e91870defdc52a0db88f1 158 Pfam PF01037 Lrp/AsnC ligand binding domain 72 149 5.5E-23 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_05280 9cfba2cabe9ee0da06f4ce854f636318 321 SUPERFAMILY SSF53686 7 314 5.89E-90 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_05280 9cfba2cabe9ee0da06f4ce854f636318 321 Gene3D G3DSA:3.40.50.1100 17 311 6.6E-113 T 11-10-2018 APT56_05280 9cfba2cabe9ee0da06f4ce854f636318 321 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 307 2.1E-69 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_05280 9cfba2cabe9ee0da06f4ce854f636318 321 Gene3D G3DSA:3.40.50.1100 54 150 6.6E-113 T 11-10-2018 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 371 550 7.6E-68 T 11-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 480 502 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 433 456 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 516 539 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 269 284 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 180 200 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 92 113 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 342 362 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR00701 60kDa inner membrane protein signature 234 252 1.2E-73 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 370 3.3E-112 T 11-10-2018 IPR028053 Membrane insertase YidC, N-terminal APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR01900 YidC translocation/secretion protein signature 505 529 5.3E-21 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR01900 YidC translocation/secretion protein signature 486 501 5.3E-21 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 PRINTS PR01900 YidC translocation/secretion protein signature 357 373 5.3E-21 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 Gene3D G3DSA:2.70.98.90 82 351 2.8E-81 T 11-10-2018 IPR038221 YidC, periplasmic domain superfamily APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 Pfam PF02096 60Kd inner membrane protein 372 549 5.8E-57 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 552 24.51 T 11-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 APT56_00270 b5977c98f540add54611cb7dfd40ae76 562 Pfam PF14849 YidC periplasmic domain 87 361 4.3E-84 T 11-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain APT56_07740 416ea0a2a63e3f7480a2df168d073609 181 SMART SM00479 7 180 5.5E-27 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APT56_07740 416ea0a2a63e3f7480a2df168d073609 181 SUPERFAMILY SSF53098 2 180 1.57E-49 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_07740 416ea0a2a63e3f7480a2df168d073609 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 43.729 T 11-10-2018 IPR022894 Oligoribonuclease GO:0000175 APT56_07740 416ea0a2a63e3f7480a2df168d073609 181 Pfam PF00929 Exonuclease 9 170 3.0E-33 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APT56_07740 416ea0a2a63e3f7480a2df168d073609 181 Gene3D G3DSA:3.30.420.10 1 181 6.8E-74 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_01100 d380a4be4dc4bb5f578357f539114f91 212 Pfam PF01810 LysE type translocator 20 210 2.9E-32 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_10330 8344082b5a70b9b63b4c32bdce0e0d01 144 Pfam PF00583 Acetyltransferase (GNAT) family 30 128 5.0E-19 T 11-10-2018 IPR000182 GNAT domain APT56_10330 8344082b5a70b9b63b4c32bdce0e0d01 144 Gene3D G3DSA:3.40.630.30 6 143 2.2E-40 T 11-10-2018 APT56_10330 8344082b5a70b9b63b4c32bdce0e0d01 144 SUPERFAMILY SSF55729 8 134 8.67E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_02945 80900925c052358026ad6745a98423e5 417 SUPERFAMILY SSF51905 1 415 1.04E-41 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02945 80900925c052358026ad6745a98423e5 417 SUPERFAMILY SSF54373 272 362 2.22E-11 T 11-10-2018 APT56_02945 80900925c052358026ad6745a98423e5 417 Pfam PF01266 FAD dependent oxidoreductase 2 400 1.7E-62 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_02945 80900925c052358026ad6745a98423e5 417 Gene3D G3DSA:3.50.50.60 101 401 4.6E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_02945 80900925c052358026ad6745a98423e5 417 Gene3D G3DSA:3.30.9.10 134 361 4.6E-47 T 11-10-2018 APT56_02945 80900925c052358026ad6745a98423e5 417 Gene3D G3DSA:3.50.50.60 1 78 7.6E-12 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_17065 e576e8c3746fcc75b987dfce1228c9e2 321 PIRSF PIRSF017082 1 321 4.8E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17065 e576e8c3746fcc75b987dfce1228c9e2 321 Gene3D G3DSA:3.40.190.150 26 311 1.4E-100 T 11-10-2018 APT56_17065 e576e8c3746fcc75b987dfce1228c9e2 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 315 1.5E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17065 e576e8c3746fcc75b987dfce1228c9e2 321 Gene3D G3DSA:3.40.190.10 123 246 1.4E-100 T 11-10-2018 APT56_17065 e576e8c3746fcc75b987dfce1228c9e2 321 SUPERFAMILY SSF53850 108 284 6.7E-14 T 11-10-2018 APT56_27115 278f372e807916bb1582139aa4a46e5f 307 Gene3D G3DSA:3.40.190.10 163 264 3.2E-66 T 11-10-2018 APT56_27115 278f372e807916bb1582139aa4a46e5f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_27115 278f372e807916bb1582139aa4a46e5f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_27115 278f372e807916bb1582139aa4a46e5f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.5E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_27115 278f372e807916bb1582139aa4a46e5f 307 Gene3D G3DSA:3.40.190.10 91 290 3.2E-66 T 11-10-2018 APT56_27115 278f372e807916bb1582139aa4a46e5f 307 Gene3D G3DSA:1.10.10.10 3 89 1.1E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27115 278f372e807916bb1582139aa4a46e5f 307 SUPERFAMILY SSF46785 4 112 6.39E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_27115 278f372e807916bb1582139aa4a46e5f 307 SUPERFAMILY SSF53850 89 297 8.14E-47 T 11-10-2018 APT56_27115 278f372e807916bb1582139aa4a46e5f 307 Pfam PF03466 LysR substrate binding domain 88 293 2.6E-44 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_27115 278f372e807916bb1582139aa4a46e5f 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 8.5E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00225 44fcc1be1efcafd688578c23ecadea48 324 SUPERFAMILY SSF161098 90 304 6.7E-18 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00225 44fcc1be1efcafd688578c23ecadea48 324 Gene3D G3DSA:1.10.3720.10 83 315 4.3E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00225 44fcc1be1efcafd688578c23ecadea48 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 8.5E-40 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_21785 91cfda2a518595e7cf85dd967881cfc3 187 Pfam PF11937 Protein of unknown function (DUF3455) 46 185 1.3E-28 T 11-10-2018 IPR021851 Protein of unknown function DUF3455 APT56_07435 62cd78d96ae581f3e127c1027c520286 390 Gene3D G3DSA:1.10.8.350 31 194 3.0E-77 T 11-10-2018 APT56_07435 62cd78d96ae581f3e127c1027c520286 390 Pfam PF13406 Transglycosylase SLT domain 19 310 3.5E-99 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 APT56_07435 62cd78d96ae581f3e127c1027c520286 390 SUPERFAMILY SSF47090 317 387 4.45E-18 T 11-10-2018 IPR036365 PGBD-like superfamily APT56_07435 62cd78d96ae581f3e127c1027c520286 390 Gene3D G3DSA:1.10.101.10 317 389 1.2E-12 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 APT56_07435 62cd78d96ae581f3e127c1027c520286 390 Pfam PF01471 Putative peptidoglycan binding domain 331 386 3.6E-13 T 11-10-2018 IPR002477 Peptidoglycan binding-like APT56_07435 62cd78d96ae581f3e127c1027c520286 390 SUPERFAMILY SSF53955 4 317 3.19E-96 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_07435 62cd78d96ae581f3e127c1027c520286 390 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 19 313 2.7E-106 T 11-10-2018 IPR011970 Lytic murein transglycosylase APT56_07435 62cd78d96ae581f3e127c1027c520286 390 Gene3D G3DSA:1.10.530.10 61 309 3.0E-77 T 11-10-2018 APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 9.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 9.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 9.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 Gene3D G3DSA:3.40.190.10 103 294 1.5E-46 T 11-10-2018 APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 Gene3D G3DSA:3.40.190.10 164 267 1.5E-46 T 11-10-2018 APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 SUPERFAMILY SSF53850 95 302 3.08E-29 T 11-10-2018 APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 SUPERFAMILY SSF46785 3 86 6.25E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 8.6E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 Pfam PF03466 LysR substrate binding domain 92 298 6.9E-28 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_10405 95a52cbe3f84b429f33f65f3c8044162 310 Gene3D G3DSA:1.10.10.10 6 90 1.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08915 49ed015924ea8d492d714ffa9f8dddd2 313 SUPERFAMILY SSF161098 94 293 1.7E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08915 49ed015924ea8d492d714ffa9f8dddd2 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 313 2.9E-31 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_08915 49ed015924ea8d492d714ffa9f8dddd2 313 Gene3D G3DSA:1.10.3720.10 91 309 5.4E-24 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08915 49ed015924ea8d492d714ffa9f8dddd2 313 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 21 72 1.4E-10 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_04795 4fc30ab6bb7966bb4ad031ec3e636d47 297 SUPERFAMILY SSF53850 90 296 6.01E-46 T 11-10-2018 APT56_04795 4fc30ab6bb7966bb4ad031ec3e636d47 297 Pfam PF03466 LysR substrate binding domain 89 293 5.1E-46 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_04795 4fc30ab6bb7966bb4ad031ec3e636d47 297 Gene3D G3DSA:1.10.10.10 3 91 8.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_04795 4fc30ab6bb7966bb4ad031ec3e636d47 297 SUPERFAMILY SSF46785 1 113 2.63E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_04795 4fc30ab6bb7966bb4ad031ec3e636d47 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.6E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_04795 4fc30ab6bb7966bb4ad031ec3e636d47 297 Gene3D G3DSA:3.40.190.290 93 296 6.9E-45 T 11-10-2018 APT56_01290 1072bd6c145f77b9ddad1d73b0c36623 406 SUPERFAMILY SSF103473 7 383 3.66E-28 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_01290 1072bd6c145f77b9ddad1d73b0c36623 406 Gene3D G3DSA:1.20.1250.20 17 200 7.8E-10 T 11-10-2018 APT56_01290 1072bd6c145f77b9ddad1d73b0c36623 406 Gene3D G3DSA:1.20.1250.20 214 396 8.0E-11 T 11-10-2018 APT56_01290 1072bd6c145f77b9ddad1d73b0c36623 406 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 27 381 3.5E-81 T 11-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB APT56_01590 b51960c690b4dd4e8d53e4a1e56066cf 359 Gene3D G3DSA:3.40.800.10 33 349 2.7E-103 T 11-10-2018 APT56_01590 b51960c690b4dd4e8d53e4a1e56066cf 359 ProSitePatterns PS01053 Arginase family signature. 270 291 - T 11-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 APT56_01590 b51960c690b4dd4e8d53e4a1e56066cf 359 SUPERFAMILY SSF52768 64 344 9.71E-88 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily APT56_01590 b51960c690b4dd4e8d53e4a1e56066cf 359 PIRSF PIRSF036979 49 346 4.8E-97 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_01590 b51960c690b4dd4e8d53e4a1e56066cf 359 TIGRFAM TIGR01230 agmatinase: agmatinase 63 339 9.0E-62 T 11-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 APT56_01590 b51960c690b4dd4e8d53e4a1e56066cf 359 Pfam PF00491 Arginase family 71 338 2.2E-86 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_18455 6b76b1c82c339a40636331282a13f81f 147 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 3 145 4.5E-21 T 11-10-2018 IPR019587 Polyketide cyclase/dehydrase APT56_18455 6b76b1c82c339a40636331282a13f81f 147 Gene3D G3DSA:3.30.530.20 3 146 8.0E-36 T 11-10-2018 IPR023393 START-like domain superfamily APT56_18455 6b76b1c82c339a40636331282a13f81f 147 SUPERFAMILY SSF55961 2 145 7.34E-29 T 11-10-2018 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 Gene3D G3DSA:2.40.50.100 104 138 2.8E-10 T 11-10-2018 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 Pfam PF13437 HlyD family secretion protein 332 444 1.0E-17 T 11-10-2018 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 Gene3D G3DSA:2.40.30.170 346 460 1.4E-10 T 11-10-2018 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 Pfam PF13533 Biotin-lipoyl like 105 144 5.2E-9 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 75 98 3.3E-47 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 344 365 3.3E-47 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 377 401 3.3E-47 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 401 424 3.3E-47 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 117 137 3.3E-47 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 442 457 3.3E-47 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 457 477 3.3E-47 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 SUPERFAMILY SSF111369 97 167 3.53E-6 T 11-10-2018 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 65 478 3.1E-125 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 ProSitePatterns PS00543 HlyD family secretion proteins signature. 442 464 - T 11-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 Gene3D G3DSA:2.40.30.170 93 103 2.8E-10 T 11-10-2018 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 Gene3D G3DSA:1.10.287.470 139 165 2.8E-10 T 11-10-2018 APT56_09760 fe0e548fcda0510bb3bb49e8096650cb 478 Gene3D G3DSA:1.10.287.470 204 309 7.6E-7 T 11-10-2018 APT56_21390 9f6be451f35e9bd641069a934b5ba5b2 360 Pfam PF10282 Lactonase, 7-bladed beta-propeller 15 356 7.5E-81 T 11-10-2018 IPR019405 Lactonase, 7-bladed beta propeller APT56_21390 9f6be451f35e9bd641069a934b5ba5b2 360 SUPERFAMILY SSF51004 40 339 3.66E-33 T 11-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily APT56_21390 9f6be451f35e9bd641069a934b5ba5b2 360 Gene3D G3DSA:2.130.10.10 10 359 2.9E-91 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 SUPERFAMILY SSF52540 139 366 6.96E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 Pfam PF00158 Sigma-54 interaction domain 140 305 1.3E-62 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 SMART SM00382 159 302 1.7E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 Pfam PF02954 Bacterial regulatory protein, Fis family 412 451 6.2E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 163 176 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 SUPERFAMILY SSF46689 410 453 8.96E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 Gene3D G3DSA:3.40.50.300 127 310 4.6E-59 T 11-10-2018 APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 Gene3D G3DSA:1.10.10.60 399 454 2.9E-10 T 11-10-2018 APT56_19735 c0b2cebdb4b3fa706e432e695e7928f4 468 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 225 240 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 5.3E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 5.3E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 Pfam PF07729 FCD domain 96 220 4.1E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 SMART SM00895 95 221 1.0E-21 T 11-10-2018 IPR011711 GntR, C-terminal APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 SUPERFAMILY SSF46785 4 75 2.25E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 Gene3D G3DSA:1.20.120.530 82 230 1.2E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 SMART SM00345 12 71 5.5E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 71 3.4E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 SUPERFAMILY SSF48008 91 226 4.18E-25 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_26365 5cfde2cf4e2d9bb96e7e8fc1d3e80a31 239 Gene3D G3DSA:1.10.10.10 1 75 4.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_25090 75aad7a142d5bce2475896660524f729 603 Gene3D G3DSA:1.25.40.10 393 496 1.1E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_25090 75aad7a142d5bce2475896660524f729 603 Pfam PF01435 Peptidase family M48 132 312 7.7E-12 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT56_09955 b7b361f49ae6a285a883b84c07f5ad2e 451 PIRSF PIRSF000167 2 448 1.3E-163 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 APT56_09955 b7b361f49ae6a285a883b84c07f5ad2e 451 Pfam PF04055 Radical SAM superfamily 50 220 1.8E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_09955 b7b361f49ae6a285a883b84c07f5ad2e 451 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 2 451 6.2E-167 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 APT56_09955 b7b361f49ae6a285a883b84c07f5ad2e 451 Gene3D G3DSA:1.10.10.920 358 451 2.9E-26 T 11-10-2018 APT56_09955 b7b361f49ae6a285a883b84c07f5ad2e 451 Gene3D G3DSA:3.80.30.20 1 357 1.3E-120 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APT56_09955 b7b361f49ae6a285a883b84c07f5ad2e 451 Pfam PF06969 HemN C-terminal domain 357 424 9.9E-10 T 11-10-2018 IPR010723 HemN, C-terminal APT56_09955 b7b361f49ae6a285a883b84c07f5ad2e 451 SMART SM00729 45 263 5.5E-47 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_09955 b7b361f49ae6a285a883b84c07f5ad2e 451 SUPERFAMILY SSF102114 3 438 1.96E-132 T 11-10-2018 APT56_23630 a1df71c437a70515b6f8ba8e8dcf4e15 195 Pfam PF02698 DUF218 domain 43 183 3.4E-22 T 11-10-2018 IPR003848 Domain of unknown function DUF218 APT56_06090 b2e3761ee25f9c6ec22e29e155c9bf9c 168 SUPERFAMILY SSF88659 105 165 4.8E-13 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_06090 b2e3761ee25f9c6ec22e29e155c9bf9c 168 Pfam PF08281 Sigma-70, region 4 111 163 1.7E-14 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_06090 b2e3761ee25f9c6ec22e29e155c9bf9c 168 Pfam PF04542 Sigma-70 region 2 15 80 1.6E-14 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_06090 b2e3761ee25f9c6ec22e29e155c9bf9c 168 SUPERFAMILY SSF88946 9 100 1.69E-14 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_06090 b2e3761ee25f9c6ec22e29e155c9bf9c 168 Gene3D G3DSA:1.10.1740.10 2 77 4.3E-7 T 11-10-2018 APT56_06090 b2e3761ee25f9c6ec22e29e155c9bf9c 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 165 1.1E-19 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_06090 b2e3761ee25f9c6ec22e29e155c9bf9c 168 Gene3D G3DSA:1.10.10.10 93 167 3.4E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20380 3e1d4e7e4355d8b4587f599478926774 125 Pfam PF11533 Protein of unknown function (DUF3225) 1 124 3.1E-62 T 11-10-2018 IPR024507 Protein of unknown function DUF3225 APT56_20380 3e1d4e7e4355d8b4587f599478926774 125 Gene3D G3DSA:3.10.450.50 1 125 1.2E-50 T 11-10-2018 APT56_20380 3e1d4e7e4355d8b4587f599478926774 125 SUPERFAMILY SSF54427 1 123 3.46E-38 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_11080 a79f473c29f91792414d70bb93cd0158 284 Pfam PF05853 beta-keto acid cleavage enzyme 15 281 7.2E-69 T 11-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 APT56_11080 a79f473c29f91792414d70bb93cd0158 284 Gene3D G3DSA:3.20.20.70 9 283 1.1E-73 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_01730 88f9de685eadf165b631fe9c31cd34f0 108 SUPERFAMILY SSF46626 46 99 7.41E-10 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_01730 88f9de685eadf165b631fe9c31cd34f0 108 Gene3D G3DSA:1.10.760.10 40 99 1.1E-22 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_17070 2f6498cba3fe167d3cc2b43de0f5ed55 326 PIRSF PIRSF017082 1 326 2.2E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17070 2f6498cba3fe167d3cc2b43de0f5ed55 326 Gene3D G3DSA:3.40.190.150 29 316 7.5E-113 T 11-10-2018 APT56_17070 2f6498cba3fe167d3cc2b43de0f5ed55 326 Gene3D G3DSA:3.40.190.10 127 251 7.5E-113 T 11-10-2018 APT56_17070 2f6498cba3fe167d3cc2b43de0f5ed55 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 322 1.2E-86 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17070 2f6498cba3fe167d3cc2b43de0f5ed55 326 SUPERFAMILY SSF53850 114 292 1.34E-12 T 11-10-2018 APT56_10180 e253e7f36d724e155efb30d2089a6e5e 124 Pfam PF13262 Protein of unknown function (DUF4054) 10 101 4.8E-10 T 11-10-2018 IPR025127 Protein of unknown function DUF4054 APT56_16130 1575552e7a247cc71d50973c9fa7a72e 167 Pfam PF05638 Type VI secretion system effector, Hcp 5 139 3.8E-38 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp APT56_16130 1575552e7a247cc71d50973c9fa7a72e 167 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 15 146 3.2E-24 T 11-10-2018 IPR008514 Type VI secretion system effector, Hcp APT56_16130 1575552e7a247cc71d50973c9fa7a72e 167 SUPERFAMILY SSF141452 1 162 1.96E-43 T 11-10-2018 IPR036624 Hcp1-like superfamily APT56_16130 1575552e7a247cc71d50973c9fa7a72e 167 Gene3D G3DSA:2.30.110.20 1 167 1.0E-56 T 11-10-2018 IPR036624 Hcp1-like superfamily APT56_03900 1b044e3c80804301e2d10c75f3c23df9 362 Gene3D G3DSA:2.40.30.170 68 287 8.4E-75 T 11-10-2018 APT56_03900 1b044e3c80804301e2d10c75f3c23df9 362 SUPERFAMILY SSF111369 69 282 2.35E-44 T 11-10-2018 APT56_03900 1b044e3c80804301e2d10c75f3c23df9 362 Gene3D G3DSA:2.40.420.20 288 355 8.4E-75 T 11-10-2018 APT56_03900 1b044e3c80804301e2d10c75f3c23df9 362 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 53 357 1.0E-79 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_03900 1b044e3c80804301e2d10c75f3c23df9 362 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 278 9.1E-30 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_03900 1b044e3c80804301e2d10c75f3c23df9 362 Gene3D G3DSA:1.10.287.470 112 171 8.4E-75 T 11-10-2018 APT56_03900 1b044e3c80804301e2d10c75f3c23df9 362 Gene3D G3DSA:2.40.50.100 77 205 8.4E-75 T 11-10-2018 APT56_26135 00f63f1c2d479303f3078ef5145edeb0 187 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 185 36.635 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like APT56_26135 00f63f1c2d479303f3078ef5145edeb0 187 SUPERFAMILY SSF52507 2 181 8.63E-61 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 APT56_26135 00f63f1c2d479303f3078ef5145edeb0 187 Gene3D G3DSA:3.40.50.1950 2 187 1.3E-73 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 APT56_26135 00f63f1c2d479303f3078ef5145edeb0 187 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 179 1.5E-71 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like APT56_26135 00f63f1c2d479303f3078ef5145edeb0 187 Pfam PF02441 Flavoprotein 3 165 2.4E-25 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APT56_11850 e3f246563d85b75d0d5f988df86c80d8 257 Gene3D G3DSA:3.40.50.720 1 257 4.1E-66 T 11-10-2018 APT56_11850 e3f246563d85b75d0d5f988df86c80d8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.5E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11850 e3f246563d85b75d0d5f988df86c80d8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.5E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11850 e3f246563d85b75d0d5f988df86c80d8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.5E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11850 e3f246563d85b75d0d5f988df86c80d8 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.5E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11850 e3f246563d85b75d0d5f988df86c80d8 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 255 2.8E-41 T 11-10-2018 APT56_11850 e3f246563d85b75d0d5f988df86c80d8 257 SUPERFAMILY SSF51735 7 255 4.78E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_24380 b2cb5c1ed720476c4e3ae359a000ef16 268 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 18 227 3.5E-19 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 APT56_24380 b2cb5c1ed720476c4e3ae359a000ef16 268 Gene3D G3DSA:3.40.50.1000 153 268 1.1E-6 T 11-10-2018 IPR023214 HAD superfamily APT56_24380 b2cb5c1ed720476c4e3ae359a000ef16 268 Gene3D G3DSA:3.40.50.1000 13 128 8.8E-12 T 11-10-2018 IPR023214 HAD superfamily APT56_24380 b2cb5c1ed720476c4e3ae359a000ef16 268 Pfam PF08282 haloacid dehalogenase-like hydrolase 18 84 2.9E-6 T 11-10-2018 APT56_24380 b2cb5c1ed720476c4e3ae359a000ef16 268 SUPERFAMILY SSF56784 13 260 1.72E-28 T 11-10-2018 IPR036412 HAD-like superfamily APT56_05990 08b74bdf09549cfc530007c03676c08e 398 Gene3D G3DSA:3.40.50.10540 7 386 3.3E-104 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_05990 08b74bdf09549cfc530007c03676c08e 398 Pfam PF02515 CoA-transferase family III 8 369 2.3E-98 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_05990 08b74bdf09549cfc530007c03676c08e 398 Gene3D G3DSA:3.30.1540.10 224 321 3.3E-104 T 11-10-2018 APT56_05990 08b74bdf09549cfc530007c03676c08e 398 SUPERFAMILY SSF89796 5 393 3.01E-112 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_12140 4587895605d7ba2a9fd7eac2062b5733 453 Pfam PF02120 Flagellar hook-length control protein FliK 375 444 3.8E-11 T 11-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal APT56_16840 2b90e9df9aaa42ad53330ba9825e34b7 328 Gene3D G3DSA:3.40.50.300 24 328 6.9E-96 T 11-10-2018 APT56_16840 2b90e9df9aaa42ad53330ba9825e34b7 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 304 8.9E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_16840 2b90e9df9aaa42ad53330ba9825e34b7 328 SUPERFAMILY SSF52540 46 322 8.84E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_16840 2b90e9df9aaa42ad53330ba9825e34b7 328 Pfam PF00005 ABC transporter 38 188 1.9E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_16840 2b90e9df9aaa42ad53330ba9825e34b7 328 SMART SM00382 46 238 1.3E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_16840 2b90e9df9aaa42ad53330ba9825e34b7 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 324 4.0E-29 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_16840 2b90e9df9aaa42ad53330ba9825e34b7 328 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_17875 8ec0d437f132f1d07794942f1c62b644 486 Gene3D G3DSA:1.20.1250.20 28 449 9.8E-55 T 11-10-2018 APT56_17875 8ec0d437f132f1d07794942f1c62b644 486 SUPERFAMILY SSF103473 27 452 4.71E-52 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_17875 8ec0d437f132f1d07794942f1c62b644 486 Pfam PF00083 Sugar (and other) transporter 64 446 7.2E-26 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_13950 3ef4058704667a02e0cc341f8e46db58 418 SUPERFAMILY SSF51735 1 246 1.08E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_13950 3ef4058704667a02e0cc341f8e46db58 418 Gene3D G3DSA:3.40.50.720 1 199 9.0E-37 T 11-10-2018 APT56_13950 3ef4058704667a02e0cc341f8e46db58 418 Pfam PF13781 DoxX-like family 309 408 2.5E-25 T 11-10-2018 IPR025695 DoxX-like family APT56_13950 3ef4058704667a02e0cc341f8e46db58 418 Pfam PF13460 NAD(P)H-binding 7 142 3.5E-13 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_15950 e7c934ddd19368788602058af1f5747a 137 Pfam PF03795 YCII-related domain 1 114 2.4E-20 T 11-10-2018 IPR005545 YCII-related APT56_15950 e7c934ddd19368788602058af1f5747a 137 SUPERFAMILY SSF54909 1 120 1.5E-30 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_15950 e7c934ddd19368788602058af1f5747a 137 Gene3D G3DSA:3.30.70.1060 1 119 5.7E-28 T 11-10-2018 APT56_00100 03599e8fb05bde0eef3bea1c897fb70f 560 SUPERFAMILY SSF161098 312 543 2.51E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00100 03599e8fb05bde0eef3bea1c897fb70f 560 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 278 5.2E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00100 03599e8fb05bde0eef3bea1c897fb70f 560 SUPERFAMILY SSF161098 23 275 1.2E-53 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00100 03599e8fb05bde0eef3bea1c897fb70f 560 Gene3D G3DSA:1.10.3720.10 23 285 9.1E-58 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00100 03599e8fb05bde0eef3bea1c897fb70f 560 Gene3D G3DSA:1.10.3720.10 304 555 9.1E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_25175 4efe8bfcff551e786c2b6e77c9b4ced9 351 SUPERFAMILY SSF117396 57 349 4.58E-45 T 11-10-2018 IPR036520 UPF0759 superfamily APT56_25175 4efe8bfcff551e786c2b6e77c9b4ced9 351 Pfam PF01904 Protein of unknown function DUF72 79 347 4.9E-39 T 11-10-2018 IPR002763 Protein of unknown function DUF72 APT56_25175 4efe8bfcff551e786c2b6e77c9b4ced9 351 Gene3D G3DSA:3.20.20.410 48 350 1.2E-27 T 11-10-2018 IPR036520 UPF0759 superfamily APT56_20670 f8d10819a87feeff665a619acdc33207 863 SUPERFAMILY SSF103515 553 862 1.44E-49 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_20670 f8d10819a87feeff665a619acdc33207 863 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 232 242 - T 11-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site APT56_20670 f8d10819a87feeff665a619acdc33207 863 SMART SM00869 588 851 4.8E-27 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_20670 f8d10819a87feeff665a619acdc33207 863 PRINTS PR00723 Subtilisin serine protease family (S8) signature 231 247 5.4E-7 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related APT56_20670 f8d10819a87feeff665a619acdc33207 863 PRINTS PR00723 Subtilisin serine protease family (S8) signature 12 31 5.4E-7 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related APT56_20670 f8d10819a87feeff665a619acdc33207 863 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 323 353 4.0E-8 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_20670 f8d10819a87feeff665a619acdc33207 863 Pfam PF03797 Autotransporter beta-domain 592 840 4.9E-36 T 11-10-2018 IPR005546 Autotransporter beta-domain APT56_20670 f8d10819a87feeff665a619acdc33207 863 Gene3D G3DSA:3.40.50.200 7 289 2.1E-33 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 APT56_20670 f8d10819a87feeff665a619acdc33207 863 Pfam PF12951 Passenger-associated-transport-repeat 324 353 2.4E-7 T 11-10-2018 IPR013425 Autotransporter-associated beta strand repeat APT56_20670 f8d10819a87feeff665a619acdc33207 863 Pfam PF00082 Subtilase family 12 279 3.2E-24 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APT56_20670 f8d10819a87feeff665a619acdc33207 863 Gene3D G3DSA:2.40.128.130 545 862 1.0E-55 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APT56_20670 f8d10819a87feeff665a619acdc33207 863 SUPERFAMILY SSF52743 10 290 3.01E-32 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 599 706 2.3E-30 T 11-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 768 923 7.7E-40 T 11-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 SUPERFAMILY SSF69279 14 183 6.8E-39 T 11-10-2018 APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 Pfam PF05954 Phage late control gene D protein (GPD) 32 353 5.6E-67 T 11-10-2018 APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 Gene3D G3DSA:3.30.1920.30 236 302 7.4E-60 T 11-10-2018 APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 Gene3D G3DSA:2.40.50.230 427 533 6.2E-28 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 Gene3D G3DSA:2.30.110.50 30 349 7.4E-60 T 11-10-2018 APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 SUPERFAMILY SSF69255 436 529 8.63E-20 T 11-10-2018 APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 Gene3D G3DSA:3.55.50.10 101 201 7.4E-60 T 11-10-2018 APT56_14475 76d33565f069e74797f7a09e0ac26d77 956 SUPERFAMILY SSF69279 220 425 1.65E-10 T 11-10-2018 APT56_18005 32e236eaa77d76da6a8ceda88e4072a8 329 PIRSF PIRSF017082 1 328 3.7E-75 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18005 32e236eaa77d76da6a8ceda88e4072a8 329 SUPERFAMILY SSF53850 119 285 2.76E-10 T 11-10-2018 APT56_18005 32e236eaa77d76da6a8ceda88e4072a8 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 324 8.7E-69 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18005 32e236eaa77d76da6a8ceda88e4072a8 329 Gene3D G3DSA:3.40.190.10 130 252 1.9E-97 T 11-10-2018 APT56_18005 32e236eaa77d76da6a8ceda88e4072a8 329 Gene3D G3DSA:3.40.190.150 32 318 1.9E-97 T 11-10-2018 APT56_20430 bb98892bcbdc729cd0daf1ccea9a3ce7 301 SUPERFAMILY SSF74650 14 292 2.45E-48 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 APT56_20430 bb98892bcbdc729cd0daf1ccea9a3ce7 301 Pfam PF01263 Aldose 1-epimerase 30 291 1.7E-29 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 APT56_20430 bb98892bcbdc729cd0daf1ccea9a3ce7 301 Gene3D G3DSA:2.70.98.10 8 296 8.1E-70 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 APT56_15340 014aefcd9704a63f51764437ae58ee96 191 Pfam PF04471 Restriction endonuclease 81 186 3.8E-18 T 11-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 APT56_15340 014aefcd9704a63f51764437ae58ee96 191 SUPERFAMILY SSF52980 83 189 6.43E-10 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT56_14200 e7c433267fa788c9db0e8b33e4ae5ecc 401 Gene3D G3DSA:1.20.1720.10 13 391 1.3E-80 T 11-10-2018 APT56_14200 e7c433267fa788c9db0e8b33e4ae5ecc 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 13 362 5.9E-68 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 APT56_14200 e7c433267fa788c9db0e8b33e4ae5ecc 401 SUPERFAMILY SSF103473 5 389 7.32E-47 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_14200 e7c433267fa788c9db0e8b33e4ae5ecc 401 Pfam PF07690 Major Facilitator Superfamily 20 359 1.9E-34 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_14200 e7c433267fa788c9db0e8b33e4ae5ecc 401 ProSitePatterns PS00216 Sugar transport proteins signature 1. 67 84 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_24755 0ae44889e78f527a358310a2726edc56 491 Pfam PF07171 MlrC C-terminus 299 480 5.1E-52 T 11-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal APT56_24755 0ae44889e78f527a358310a2726edc56 491 Pfam PF07364 Metallopeptidase family M81 2 289 7.8E-87 T 11-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal APT56_24755 0ae44889e78f527a358310a2726edc56 491 PIRSF PIRSF012702 1 491 1.7E-166 T 11-10-2018 IPR009197 Microcystin LR degradation protein MlrC APT56_14065 c23c70c41d4f4a9010a5d8b0b96ab30d 216 Gene3D G3DSA:1.10.260.40 16 96 1.1E-13 T 11-10-2018 APT56_14065 c23c70c41d4f4a9010a5d8b0b96ab30d 216 SMART SM00530 23 78 5.2E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_14065 c23c70c41d4f4a9010a5d8b0b96ab30d 216 Pfam PF01381 Helix-turn-helix 24 76 9.2E-11 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_14065 c23c70c41d4f4a9010a5d8b0b96ab30d 216 Gene3D G3DSA:2.60.120.10 97 199 2.8E-22 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_14065 c23c70c41d4f4a9010a5d8b0b96ab30d 216 SUPERFAMILY SSF51182 105 199 2.58E-20 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_14065 c23c70c41d4f4a9010a5d8b0b96ab30d 216 SUPERFAMILY SSF47413 18 81 2.82E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_14065 c23c70c41d4f4a9010a5d8b0b96ab30d 216 Pfam PF07883 Cupin domain 142 199 1.9E-9 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_05235 3e5904cafe326bebd3291d4dccfdf846 323 SUPERFAMILY SSF53850 109 284 3.18E-16 T 11-10-2018 APT56_05235 3e5904cafe326bebd3291d4dccfdf846 323 Gene3D G3DSA:3.40.190.150 26 313 2.8E-112 T 11-10-2018 APT56_05235 3e5904cafe326bebd3291d4dccfdf846 323 PIRSF PIRSF017082 1 322 1.7E-82 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_05235 3e5904cafe326bebd3291d4dccfdf846 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 319 3.6E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_05235 3e5904cafe326bebd3291d4dccfdf846 323 Gene3D G3DSA:3.40.190.10 124 248 2.8E-112 T 11-10-2018 APT56_12515 d3464529a695e571e315cf1fefe8765b 299 SUPERFAMILY SSF103481 40 140 1.83E-13 T 11-10-2018 APT56_12515 d3464529a695e571e315cf1fefe8765b 299 SUPERFAMILY SSF103481 188 286 1.96E-14 T 11-10-2018 APT56_12515 d3464529a695e571e315cf1fefe8765b 299 Pfam PF00892 EamA-like transporter family 153 283 2.0E-19 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_12515 d3464529a695e571e315cf1fefe8765b 299 Pfam PF00892 EamA-like transporter family 13 140 9.7E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_05160 a7efe6d4762edea361276d457b5c4f14 331 SMART SM00382 46 238 1.5E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05160 a7efe6d4762edea361276d457b5c4f14 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 304 7.9E-20 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_05160 a7efe6d4762edea361276d457b5c4f14 331 Gene3D G3DSA:3.40.50.300 28 330 2.8E-100 T 11-10-2018 APT56_05160 a7efe6d4762edea361276d457b5c4f14 331 Pfam PF00005 ABC transporter 38 189 9.1E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_05160 a7efe6d4762edea361276d457b5c4f14 331 SUPERFAMILY SSF52540 28 260 6.23E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05160 a7efe6d4762edea361276d457b5c4f14 331 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_05160 a7efe6d4762edea361276d457b5c4f14 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 322 5.5E-27 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APT56_18075 58d1b4dc8a47ff680f2a9c1355abee60 389 SUPERFAMILY SSF53822 24 382 5.57E-64 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_18075 58d1b4dc8a47ff680f2a9c1355abee60 389 Gene3D G3DSA:3.40.50.2300 27 366 3.2E-105 T 11-10-2018 APT56_18075 58d1b4dc8a47ff680f2a9c1355abee60 389 Gene3D G3DSA:3.40.50.2300 144 379 3.2E-105 T 11-10-2018 APT56_18075 58d1b4dc8a47ff680f2a9c1355abee60 389 Pfam PF13458 Periplasmic binding protein 24 375 5.4E-45 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_16515 151c11ac8a5b7886cfba22d2380a9727 756 SMART SM00488 174 418 0.0035 T 11-10-2018 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 APT56_16515 151c11ac8a5b7886cfba22d2380a9727 756 SMART SM00491 605 742 1.6E-11 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 APT56_16515 151c11ac8a5b7886cfba22d2380a9727 756 Gene3D G3DSA:3.40.50.300 558 756 2.0E-47 T 11-10-2018 APT56_16515 151c11ac8a5b7886cfba22d2380a9727 756 SUPERFAMILY SSF52540 194 738 1.88E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_16515 151c11ac8a5b7886cfba22d2380a9727 756 Pfam PF06733 DEAD_2 269 388 1.7E-11 T 11-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 APT56_16515 151c11ac8a5b7886cfba22d2380a9727 756 Gene3D G3DSA:1.10.275.30 384 506 5.9E-34 T 11-10-2018 APT56_16515 151c11ac8a5b7886cfba22d2380a9727 756 Pfam PF13307 Helicase C-terminal domain 592 754 2.4E-32 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 APT56_16515 151c11ac8a5b7886cfba22d2380a9727 756 Gene3D G3DSA:3.40.50.300 184 543 5.9E-34 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 2.3E-19 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 2.3E-19 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 298 320 2.3E-19 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 117 135 2.3E-19 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 12 341 5.4E-57 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 6.5E-8 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 313 320 6.5E-8 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 6.5E-8 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 Gene3D G3DSA:3.50.50.100 4 421 1.3E-104 T 11-10-2018 APT56_24340 8ee859a2a769a50cf2be70921dbd3f8a 439 SUPERFAMILY SSF51905 3 347 1.25E-32 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_22780 0e7983dd1a37a1092691b3fb8421705b 296 SMART SM01091 207 285 1.5E-24 T 11-10-2018 IPR005170 Transporter-associated domain APT56_22780 0e7983dd1a37a1092691b3fb8421705b 296 Gene3D G3DSA:3.30.465.10 198 285 5.2E-24 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APT56_22780 0e7983dd1a37a1092691b3fb8421705b 296 SUPERFAMILY SSF54631 70 204 1.39E-28 T 11-10-2018 APT56_22780 0e7983dd1a37a1092691b3fb8421705b 296 Pfam PF00571 CBS domain 142 191 4.7E-4 T 11-10-2018 IPR000644 CBS domain APT56_22780 0e7983dd1a37a1092691b3fb8421705b 296 Pfam PF00571 CBS domain 99 131 0.0017 T 11-10-2018 IPR000644 CBS domain APT56_22780 0e7983dd1a37a1092691b3fb8421705b 296 Pfam PF03471 Transporter associated domain 210 284 2.0E-17 T 11-10-2018 IPR005170 Transporter-associated domain APT56_22780 0e7983dd1a37a1092691b3fb8421705b 296 SUPERFAMILY SSF56176 205 286 5.73E-20 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_22780 0e7983dd1a37a1092691b3fb8421705b 296 Gene3D G3DSA:3.10.580.10 53 197 1.8E-50 T 11-10-2018 APT56_16395 b0c593c4fb1733dcc9ba44a09dee123e 277 SUPERFAMILY SSF53474 14 274 3.11E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_16395 b0c593c4fb1733dcc9ba44a09dee123e 277 Pfam PF00561 alpha/beta hydrolase fold 38 261 2.0E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_16395 b0c593c4fb1733dcc9ba44a09dee123e 277 Gene3D G3DSA:3.40.50.1820 10 269 6.2E-64 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_26970 4917b7afcc87b4b29fb66dee1a137e86 282 Pfam PF07007 Lysozyme inhibitor LprI 28 94 5.0E-10 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal APT56_26970 4917b7afcc87b4b29fb66dee1a137e86 282 Gene3D G3DSA:1.20.1270.180 21 125 5.3E-9 T 11-10-2018 APT56_06500 75a03f5237dfee56c27911a62560fce7 182 PIRSF PIRSF000239 1 182 6.3E-38 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_06500 75a03f5237dfee56c27911a62560fce7 182 SUPERFAMILY SSF52833 4 181 1.83E-43 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_06500 75a03f5237dfee56c27911a62560fce7 182 Pfam PF00578 AhpC/TSA family 6 143 4.9E-24 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_06500 75a03f5237dfee56c27911a62560fce7 182 Gene3D G3DSA:3.40.30.10 7 182 4.4E-46 T 11-10-2018 APT56_00620 50e4abf10888f7998b1b5903502115e9 266 Gene3D G3DSA:3.40.50.720 13 265 5.8E-78 T 11-10-2018 APT56_00620 50e4abf10888f7998b1b5903502115e9 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 157 185 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 1.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 1.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 1.5E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 97 108 4.0E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 4.0E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 4.0E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 4.0E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 23 40 4.0E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 4.0E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_00620 50e4abf10888f7998b1b5903502115e9 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 22 206 7.7E-4 T 11-10-2018 APT56_00620 50e4abf10888f7998b1b5903502115e9 266 SUPERFAMILY SSF51735 17 264 9.74E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_00620 50e4abf10888f7998b1b5903502115e9 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 28 263 5.2E-60 T 11-10-2018 APT56_22860 c17c1f1a870a70a47373c7c3d6e57faa 1253 Pfam PF05359 Domain of Unknown Function (DUF748) 507 626 1.0E-9 T 11-10-2018 IPR008023 Protein of unknown function DUF748 APT56_22860 c17c1f1a870a70a47373c7c3d6e57faa 1253 Pfam PF05359 Domain of Unknown Function (DUF748) 157 310 1.2E-20 T 11-10-2018 IPR008023 Protein of unknown function DUF748 APT56_22860 c17c1f1a870a70a47373c7c3d6e57faa 1253 Pfam PF05359 Domain of Unknown Function (DUF748) 859 1005 2.7E-37 T 11-10-2018 IPR008023 Protein of unknown function DUF748 APT56_22860 c17c1f1a870a70a47373c7c3d6e57faa 1253 Pfam PF05359 Domain of Unknown Function (DUF748) 638 780 2.8E-21 T 11-10-2018 IPR008023 Protein of unknown function DUF748 APT56_12570 da9a93d837966d105b32489cbff24c79 563 SUPERFAMILY SSF55785 20 114 1.55E-27 T 11-10-2018 IPR035965 PAS domain superfamily APT56_12570 da9a93d837966d105b32489cbff24c79 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 339 493 1.2E-49 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12570 da9a93d837966d105b32489cbff24c79 563 Pfam PF08447 PAS fold 30 114 4.8E-16 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 APT56_12570 da9a93d837966d105b32489cbff24c79 563 SMART SM00086 80 121 8.3E-4 T 11-10-2018 IPR001610 PAC motif APT56_12570 da9a93d837966d105b32489cbff24c79 563 SMART SM00283 280 527 9.6E-83 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 APT56_12570 da9a93d837966d105b32489cbff24c79 563 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 114 8.0E-16 T 11-10-2018 IPR000014 PAS domain APT56_12570 da9a93d837966d105b32489cbff24c79 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 1.6E-49 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12570 da9a93d837966d105b32489cbff24c79 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 378 405 1.6E-49 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12570 da9a93d837966d105b32489cbff24c79 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 301 330 1.6E-49 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12570 da9a93d837966d105b32489cbff24c79 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 455 484 1.6E-49 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 APT56_12570 da9a93d837966d105b32489cbff24c79 563 Gene3D G3DSA:3.30.450.20 13 145 2.2E-27 T 11-10-2018 APT56_12570 da9a93d837966d105b32489cbff24c79 563 Gene3D G3DSA:1.10.287.950 226 529 2.6E-81 T 11-10-2018 APT56_12570 da9a93d837966d105b32489cbff24c79 563 SMART SM00091 8 74 3.8E-4 T 11-10-2018 IPR000014 PAS domain APT56_12570 da9a93d837966d105b32489cbff24c79 563 SMART SM00304 226 279 6.0E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APT56_12570 da9a93d837966d105b32489cbff24c79 563 SUPERFAMILY SSF58104 254 528 1.16E-67 T 11-10-2018 APT56_06085 9f76ecf5c765e636c037e70c0c748bde 147 PIRSF PIRSF015875 1 147 1.3E-41 T 11-10-2018 IPR007418 Protein of unknown function DUF474 APT56_11935 3d6c751e9009d7779cb04c4d8dde6e99 129 SMART SM00448 6 120 1.5E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_11935 3d6c751e9009d7779cb04c4d8dde6e99 129 SUPERFAMILY SSF52172 4 125 1.57E-36 T 11-10-2018 IPR011006 CheY-like superfamily APT56_11935 3d6c751e9009d7779cb04c4d8dde6e99 129 Gene3D G3DSA:3.40.50.2300 1 127 2.9E-38 T 11-10-2018 APT56_11935 3d6c751e9009d7779cb04c4d8dde6e99 129 Pfam PF00072 Response regulator receiver domain 8 120 1.3E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24690 e161bb928bfe670aa032915dbe36d0c1 147 Pfam PF02566 OsmC-like protein 35 132 4.5E-17 T 11-10-2018 IPR003718 OsmC/Ohr family APT56_24690 e161bb928bfe670aa032915dbe36d0c1 147 Gene3D G3DSA:3.30.300.20 11 139 1.9E-32 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_24690 e161bb928bfe670aa032915dbe36d0c1 147 SUPERFAMILY SSF82784 1 138 1.96E-36 T 11-10-2018 IPR036102 OsmC/Ohr superfamily APT56_14795 14c46abe5d3f9f655d98770f93c243e9 301 Gene3D G3DSA:2.60.120.10 153 252 2.2E-73 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_14795 14c46abe5d3f9f655d98770f93c243e9 301 Pfam PF05726 Pirin C-terminal cupin domain 184 283 1.8E-26 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 APT56_14795 14c46abe5d3f9f655d98770f93c243e9 301 Gene3D G3DSA:2.60.120.10 25 278 2.2E-73 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_14795 14c46abe5d3f9f655d98770f93c243e9 301 SUPERFAMILY SSF51182 13 286 8.53E-83 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_14795 14c46abe5d3f9f655d98770f93c243e9 301 PIRSF PIRSF006232 9 291 4.0E-89 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 APT56_14795 14c46abe5d3f9f655d98770f93c243e9 301 Pfam PF02678 Pirin 26 131 2.1E-35 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 APT56_22015 ea10442835ac98b86dec7f41b72f4ad8 202 SUPERFAMILY SSF111304 8 201 1.57E-67 T 11-10-2018 IPR023627 Recombination protein RecR APT56_22015 ea10442835ac98b86dec7f41b72f4ad8 202 Pfam PF02132 RecR protein 44 82 9.9E-13 T 11-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger APT56_22015 ea10442835ac98b86dec7f41b72f4ad8 202 TIGRFAM TIGR00615 recR: recombination protein RecR 8 200 2.9E-64 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 APT56_22015 ea10442835ac98b86dec7f41b72f4ad8 202 Gene3D G3DSA:3.40.1360.10 81 202 6.3E-38 T 11-10-2018 APT56_22015 ea10442835ac98b86dec7f41b72f4ad8 202 Pfam PF13662 Toprim domain 85 175 5.4E-21 T 11-10-2018 IPR006171 TOPRIM domain APT56_22015 ea10442835ac98b86dec7f41b72f4ad8 202 Hamap MF_00017 Recombination protein RecR [recR]. 1 202 87.795 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 APT56_22015 ea10442835ac98b86dec7f41b72f4ad8 202 Gene3D G3DSA:1.10.8.420 6 57 7.2E-16 T 11-10-2018 APT56_22015 ea10442835ac98b86dec7f41b72f4ad8 202 SMART SM00493 84 169 4.4E-8 T 11-10-2018 IPR006171 TOPRIM domain APT56_18965 f09222c2b5e72ba00d1be8b97ca08d95 357 Pfam PF10503 Esterase PHB depolymerase 79 283 9.1E-63 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 APT56_18965 f09222c2b5e72ba00d1be8b97ca08d95 357 Gene3D G3DSA:3.40.50.1820 55 349 1.0E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18965 f09222c2b5e72ba00d1be8b97ca08d95 357 SUPERFAMILY SSF53474 66 281 1.06E-34 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18965 f09222c2b5e72ba00d1be8b97ca08d95 357 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 84 280 3.1E-36 T 11-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 APT56_09285 be5a02eee1fd8c2de618b982519ffe0c 396 SUPERFAMILY SSF50969 23 369 4.87E-73 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like APT56_09285 be5a02eee1fd8c2de618b982519ffe0c 396 Gene3D G3DSA:2.130.10.10 47 391 5.7E-130 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_09285 be5a02eee1fd8c2de618b982519ffe0c 396 Pfam PF06433 Methylamine dehydrogenase heavy chain (MADH) 50 366 3.4E-45 T 11-10-2018 IPR009451 Amine dehydrogenase heavy chain GO:0030058|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 APT56_12065 5e3511f8dd2fdd29434fc4ecf312617e 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 86 1.9E-30 T 11-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 APT56_12065 5e3511f8dd2fdd29434fc4ecf312617e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.3E-21 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_12065 5e3511f8dd2fdd29434fc4ecf312617e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.3E-21 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_12065 5e3511f8dd2fdd29434fc4ecf312617e 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.3E-21 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_12065 5e3511f8dd2fdd29434fc4ecf312617e 89 PIRSF PIRSF004669 1 89 2.7E-31 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_12065 5e3511f8dd2fdd29434fc4ecf312617e 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.1E-28 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 APT56_24335 96edfc1f49fd10fa9ff6654eaf89d293 132 Pfam PF01219 Prokaryotic diacylglycerol kinase 24 123 2.7E-32 T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 APT56_24335 96edfc1f49fd10fa9ff6654eaf89d293 132 Gene3D G3DSA:1.10.3830.10 11 130 2.6E-35 T 11-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 APT56_00385 a7649bf7a570854e9586b4f3b08fa0e9 280 Gene3D G3DSA:1.10.10.10 12 81 1.3E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00385 a7649bf7a570854e9586b4f3b08fa0e9 280 Pfam PF09339 IclR helix-turn-helix domain 16 65 7.1E-15 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_00385 a7649bf7a570854e9586b4f3b08fa0e9 280 Pfam PF01614 Bacterial transcriptional regulator 139 258 1.8E-12 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_00385 a7649bf7a570854e9586b4f3b08fa0e9 280 SUPERFAMILY SSF46785 16 85 9.84E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00385 a7649bf7a570854e9586b4f3b08fa0e9 280 Gene3D G3DSA:3.30.450.40 89 262 4.1E-33 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_00385 a7649bf7a570854e9586b4f3b08fa0e9 280 SUPERFAMILY SSF55781 89 260 8.5E-34 T 11-10-2018 APT56_00385 a7649bf7a570854e9586b4f3b08fa0e9 280 SMART SM00346 13 105 2.2E-12 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_05060 13ff531466068b2390fd0c25bb0b50dd 311 Gene3D G3DSA:3.90.550.10 2 220 4.8E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_05060 13ff531466068b2390fd0c25bb0b50dd 311 Pfam PF00535 Glycosyl transferase family 2 9 116 2.4E-27 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_05060 13ff531466068b2390fd0c25bb0b50dd 311 SUPERFAMILY SSF53448 6 255 1.97E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_00575 7aa0018bbf421d96ee05745a7cef110d 189 SMART SM00903 14 160 3.2E-33 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_00575 7aa0018bbf421d96ee05745a7cef110d 189 SUPERFAMILY SSF50475 2 182 9.32E-46 T 11-10-2018 APT56_00575 7aa0018bbf421d96ee05745a7cef110d 189 Pfam PF01613 Flavin reductase like domain 19 152 2.0E-25 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_00575 7aa0018bbf421d96ee05745a7cef110d 189 Gene3D G3DSA:2.30.110.10 1 186 2.6E-55 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_24300 34c212cb393adbc3e5e7521f5c1b2c34 333 Pfam PF04909 Amidohydrolase 5 331 1.3E-46 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_24300 34c212cb393adbc3e5e7521f5c1b2c34 333 Gene3D G3DSA:3.20.20.140 2 333 2.2E-99 T 11-10-2018 APT56_24300 34c212cb393adbc3e5e7521f5c1b2c34 333 SUPERFAMILY SSF51556 4 332 1.04E-75 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_03235 2f909fd0991a3adcc3fdd9d3bf4fb19e 287 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 10 283 2.9E-69 T 11-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APT56_03235 2f909fd0991a3adcc3fdd9d3bf4fb19e 287 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 7 282 30.926 T 11-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APT56_03235 2f909fd0991a3adcc3fdd9d3bf4fb19e 287 SUPERFAMILY SSF53223 8 107 2.24E-28 T 11-10-2018 APT56_03235 2f909fd0991a3adcc3fdd9d3bf4fb19e 287 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 122 172 4.7E-9 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase APT56_03235 2f909fd0991a3adcc3fdd9d3bf4fb19e 287 Gene3D G3DSA:3.40.50.10860 10 267 8.8E-75 T 11-10-2018 APT56_03235 2f909fd0991a3adcc3fdd9d3bf4fb19e 287 Gene3D G3DSA:3.40.50.720 121 248 8.8E-75 T 11-10-2018 APT56_03235 2f909fd0991a3adcc3fdd9d3bf4fb19e 287 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 12 95 6.4E-21 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APT56_03235 2f909fd0991a3adcc3fdd9d3bf4fb19e 287 SUPERFAMILY SSF51735 108 282 1.69E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_01240 0c29d9935993b4c1edcd1a57512215db 81 Pfam PF01722 BolA-like protein 23 75 1.4E-20 T 11-10-2018 IPR002634 BolA protein APT56_01240 0c29d9935993b4c1edcd1a57512215db 81 Gene3D G3DSA:3.30.300.90 4 75 2.7E-29 T 11-10-2018 APT56_01240 0c29d9935993b4c1edcd1a57512215db 81 SUPERFAMILY SSF82657 2 80 3.66E-29 T 11-10-2018 IPR036065 BolA-like superfamily APT56_01240 0c29d9935993b4c1edcd1a57512215db 81 PIRSF PIRSF003113 1 81 2.0E-24 T 11-10-2018 IPR002634 BolA protein APT56_00325 b59d070b956a1e329058598c479084ef 631 SUPERFAMILY SSF51338 5 545 6.48E-23 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_00325 b59d070b956a1e329058598c479084ef 631 SUPERFAMILY SSF51556 67 499 1.36E-44 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_00325 b59d070b956a1e329058598c479084ef 631 Gene3D G3DSA:3.20.20.140 68 499 1.5E-91 T 11-10-2018 APT56_00325 b59d070b956a1e329058598c479084ef 631 Gene3D G3DSA:2.30.40.10 15 515 1.5E-91 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_00325 b59d070b956a1e329058598c479084ef 631 Gene3D G3DSA:3.10.310.70 87 197 1.5E-91 T 11-10-2018 APT56_00325 b59d070b956a1e329058598c479084ef 631 Pfam PF07969 Amidohydrolase family 58 540 2.5E-117 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_14000 47ea0ae621cd3e7588e5ee769e182cf4 332 SUPERFAMILY SSF51735 4 321 5.12E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_14000 47ea0ae621cd3e7588e5ee769e182cf4 332 PIRSF PIRSF001439 1 322 1.4E-59 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 APT56_14000 47ea0ae621cd3e7588e5ee769e182cf4 332 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 83 312 1.5E-42 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 APT56_14000 47ea0ae621cd3e7588e5ee769e182cf4 332 Gene3D G3DSA:3.30.1780.10 8 316 1.4E-69 T 11-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 APT56_14000 47ea0ae621cd3e7588e5ee769e182cf4 332 Gene3D G3DSA:3.40.50.720 121 294 1.4E-69 T 11-10-2018 APT56_15990 ba6e5b4262a08c1aece23df318546953 300 Pfam PF03466 LysR substrate binding domain 93 297 4.4E-22 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_15990 ba6e5b4262a08c1aece23df318546953 300 SUPERFAMILY SSF46785 6 91 5.99E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_15990 ba6e5b4262a08c1aece23df318546953 300 SUPERFAMILY SSF53850 96 298 1.99E-21 T 11-10-2018 APT56_15990 ba6e5b4262a08c1aece23df318546953 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 8.2E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15990 ba6e5b4262a08c1aece23df318546953 300 Gene3D G3DSA:1.10.10.10 4 90 4.9E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15990 ba6e5b4262a08c1aece23df318546953 300 Gene3D G3DSA:3.40.190.290 96 284 6.3E-20 T 11-10-2018 APT56_15990 ba6e5b4262a08c1aece23df318546953 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 7.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15990 ba6e5b4262a08c1aece23df318546953 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 7.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_15990 ba6e5b4262a08c1aece23df318546953 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 7.8E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13565 0c4f194d8c7a94392d87e58dc2c6e2d5 288 Pfam PF00005 ABC transporter 31 170 4.2E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13565 0c4f194d8c7a94392d87e58dc2c6e2d5 288 SUPERFAMILY SSF52540 10 245 3.22E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_13565 0c4f194d8c7a94392d87e58dc2c6e2d5 288 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_13565 0c4f194d8c7a94392d87e58dc2c6e2d5 288 SMART SM00382 40 233 2.8E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_13565 0c4f194d8c7a94392d87e58dc2c6e2d5 288 Gene3D G3DSA:3.40.50.300 9 239 8.0E-63 T 11-10-2018 APT56_20765 350833298e451a2187de7ca04ed6b6a3 259 Gene3D G3DSA:3.90.850.10 22 259 7.8E-79 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_20765 350833298e451a2187de7ca04ed6b6a3 259 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 53 258 2.2E-47 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_20765 350833298e451a2187de7ca04ed6b6a3 259 SUPERFAMILY SSF56529 48 259 9.03E-65 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_18830 1c970e9392365eb360e43a8a27398d22 278 SUPERFAMILY SSF51556 9 273 5.35E-74 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_18830 1c970e9392365eb360e43a8a27398d22 278 Pfam PF04909 Amidohydrolase 10 273 2.7E-35 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_18830 1c970e9392365eb360e43a8a27398d22 278 Gene3D G3DSA:3.20.20.140 2 275 1.7E-73 T 11-10-2018 APT56_09685 93e88768cb252c0128545b0fd8df10be 152 SMART SM00116 78 125 0.015 T 11-10-2018 IPR000644 CBS domain APT56_09685 93e88768cb252c0128545b0fd8df10be 152 SMART SM00116 14 61 1.3E-4 T 11-10-2018 IPR000644 CBS domain APT56_09685 93e88768cb252c0128545b0fd8df10be 152 Gene3D G3DSA:3.10.580.10 1 141 9.8E-33 T 11-10-2018 APT56_09685 93e88768cb252c0128545b0fd8df10be 152 SUPERFAMILY SSF54631 2 126 4.55E-28 T 11-10-2018 APT56_09685 93e88768cb252c0128545b0fd8df10be 152 Pfam PF00571 CBS domain 72 125 2.1E-8 T 11-10-2018 IPR000644 CBS domain APT56_09685 93e88768cb252c0128545b0fd8df10be 152 Pfam PF00571 CBS domain 16 60 1.2E-7 T 11-10-2018 IPR000644 CBS domain APT56_03440 7be7004d91ded06659c16681c5a68495 182 SUPERFAMILY SSF158710 30 180 2.35E-43 T 11-10-2018 IPR023153 PSPTO4464-like domain superfamily APT56_03440 7be7004d91ded06659c16681c5a68495 182 Pfam PF04751 Protein of unknown function (DUF615) 20 178 2.5E-51 T 11-10-2018 IPR006839 Ribosome-associated, YjgA APT56_03440 7be7004d91ded06659c16681c5a68495 182 PIRSF PIRSF016183 2 182 1.7E-62 T 11-10-2018 IPR006839 Ribosome-associated, YjgA APT56_03440 7be7004d91ded06659c16681c5a68495 182 Gene3D G3DSA:1.10.60.30 107 182 2.8E-19 T 11-10-2018 APT56_03440 7be7004d91ded06659c16681c5a68495 182 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 11 182 21.485 T 11-10-2018 IPR006839 Ribosome-associated, YjgA APT56_03440 7be7004d91ded06659c16681c5a68495 182 Gene3D G3DSA:1.10.60.30 30 105 4.5E-27 T 11-10-2018 APT56_20020 ba7ec24e68f9b728fef0c35674fb577a 443 SUPERFAMILY SSF56935 27 443 8.55E-91 T 11-10-2018 APT56_20020 ba7ec24e68f9b728fef0c35674fb577a 443 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 19 443 1.5E-110 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) APT56_20020 ba7ec24e68f9b728fef0c35674fb577a 443 Gene3D G3DSA:2.40.160.60 27 443 9.0E-139 T 11-10-2018 APT56_23450 f06261f5111de62634004b478a6341a9 178 SUPERFAMILY SSF55729 13 162 3.27E-26 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_23450 f06261f5111de62634004b478a6341a9 178 Pfam PF13673 Acetyltransferase (GNAT) domain 61 154 4.7E-15 T 11-10-2018 IPR000182 GNAT domain APT56_23450 f06261f5111de62634004b478a6341a9 178 Gene3D G3DSA:3.40.630.30 4 178 1.0E-49 T 11-10-2018 APT56_12355 5b65cec5ea17c0df6b5a5bb9e6eed35a 167 Pfam PF04542 Sigma-70 region 2 11 77 1.8E-11 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_12355 5b65cec5ea17c0df6b5a5bb9e6eed35a 167 Gene3D G3DSA:1.10.10.10 102 167 3.1E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12355 5b65cec5ea17c0df6b5a5bb9e6eed35a 167 Pfam PF08281 Sigma-70, region 4 107 160 2.7E-17 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_12355 5b65cec5ea17c0df6b5a5bb9e6eed35a 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 162 3.8E-25 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_12355 5b65cec5ea17c0df6b5a5bb9e6eed35a 167 SUPERFAMILY SSF88946 9 89 7.46E-13 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_12355 5b65cec5ea17c0df6b5a5bb9e6eed35a 167 Gene3D G3DSA:1.10.1740.10 6 94 6.9E-9 T 11-10-2018 APT56_12355 5b65cec5ea17c0df6b5a5bb9e6eed35a 167 SUPERFAMILY SSF88659 89 165 3.71E-16 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_15480 9741814eb03b0f99c315b9e30e8fa874 320 Pfam PF00005 ABC transporter 32 173 1.7E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15480 9741814eb03b0f99c315b9e30e8fa874 320 SMART SM00382 40 237 2.3E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15480 9741814eb03b0f99c315b9e30e8fa874 320 SUPERFAMILY SSF52540 11 236 3.06E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15480 9741814eb03b0f99c315b9e30e8fa874 320 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15480 9741814eb03b0f99c315b9e30e8fa874 320 Gene3D G3DSA:3.40.50.300 9 242 8.9E-70 T 11-10-2018 APT56_03025 e76452eb9b30fab5308eb1709f359bb2 266 Pfam PF00005 ABC transporter 29 185 4.9E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_03025 e76452eb9b30fab5308eb1709f359bb2 266 Gene3D G3DSA:3.40.50.300 1 262 2.1E-55 T 11-10-2018 APT56_03025 e76452eb9b30fab5308eb1709f359bb2 266 SMART SM00382 37 257 4.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_03025 e76452eb9b30fab5308eb1709f359bb2 266 SUPERFAMILY SSF52540 11 255 1.89E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03025 e76452eb9b30fab5308eb1709f359bb2 266 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 232 254 1.7E-12 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_27190 328dd8a0a805c7d7e2e72ca24a45d7fd 324 SUPERFAMILY SSF56349 14 315 1.94E-51 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APT56_27190 328dd8a0a805c7d7e2e72ca24a45d7fd 324 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 12 320 56.76 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD APT56_27190 328dd8a0a805c7d7e2e72ca24a45d7fd 324 Gene3D G3DSA:1.10.150.130 13 104 4.5E-15 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APT56_27190 328dd8a0a805c7d7e2e72ca24a45d7fd 324 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 16 91 7.1E-17 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APT56_27190 328dd8a0a805c7d7e2e72ca24a45d7fd 324 Pfam PF00589 Phage integrase family 119 306 2.5E-37 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APT56_27190 328dd8a0a805c7d7e2e72ca24a45d7fd 324 Gene3D G3DSA:1.10.443.10 117 314 2.1E-53 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APT56_27190 328dd8a0a805c7d7e2e72ca24a45d7fd 324 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 16 321 4.3E-106 T 11-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 APT56_16310 94a8f970787557c096be5cbed9a6da33 308 Pfam PF03466 LysR substrate binding domain 88 294 3.5E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_16310 94a8f970787557c096be5cbed9a6da33 308 Gene3D G3DSA:3.40.190.290 90 294 3.1E-52 T 11-10-2018 APT56_16310 94a8f970787557c096be5cbed9a6da33 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 1.8E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_16310 94a8f970787557c096be5cbed9a6da33 308 SUPERFAMILY SSF46785 1 110 2.21E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_16310 94a8f970787557c096be5cbed9a6da33 308 SUPERFAMILY SSF53850 89 297 7.14E-40 T 11-10-2018 APT56_16310 94a8f970787557c096be5cbed9a6da33 308 Gene3D G3DSA:1.10.10.10 1 88 9.7E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19800 56850f0f883332191524a238e1cf7de6 58 Pfam PF04964 Flp/Fap pilin component 8 52 6.1E-14 T 11-10-2018 IPR007047 Flp/Fap pilin component APT56_01280 84224826880b0cd6f4f17fec020d5ae7 353 Gene3D G3DSA:3.20.20.70 2 352 9.6E-110 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_01280 84224826880b0cd6f4f17fec020d5ae7 353 Pfam PF03060 Nitronate monooxygenase 3 343 1.3E-80 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APT56_01280 84224826880b0cd6f4f17fec020d5ae7 353 SUPERFAMILY SSF51412 2 332 4.58E-61 T 11-10-2018 APT56_10765 8e5906ae5f13ca94241b02f4360be681 233 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 196 206 - T 11-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_10765 8e5906ae5f13ca94241b02f4360be681 233 SUPERFAMILY SSF53681 122 231 1.8E-28 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_10765 8e5906ae5f13ca94241b02f4360be681 233 TIGRFAM TIGR00035 asp_race: aspartate racemase 16 233 6.7E-32 T 11-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 APT56_10765 8e5906ae5f13ca94241b02f4360be681 233 Gene3D G3DSA:3.40.50.1860 9 227 7.3E-58 T 11-10-2018 APT56_10765 8e5906ae5f13ca94241b02f4360be681 233 Gene3D G3DSA:3.40.50.1860 108 218 7.3E-58 T 11-10-2018 APT56_10765 8e5906ae5f13ca94241b02f4360be681 233 SUPERFAMILY SSF53681 8 120 1.96E-16 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_10765 8e5906ae5f13ca94241b02f4360be681 233 Pfam PF01177 Asp/Glu/Hydantoin racemase 9 227 8.6E-41 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APT56_26990 fdd3e3ce708f05f8838ca09b7ae241ec 220 Pfam PF03070 TENA/THI-4/PQQC family 22 214 2.7E-37 T 11-10-2018 IPR004305 Thiaminase-2/PQQC APT56_26990 fdd3e3ce708f05f8838ca09b7ae241ec 220 Gene3D G3DSA:1.20.910.10 1 220 2.3E-65 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_26990 fdd3e3ce708f05f8838ca09b7ae241ec 220 SUPERFAMILY SSF48613 1 213 7.12E-66 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_26990 fdd3e3ce708f05f8838ca09b7ae241ec 220 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 18 214 2.8E-41 T 11-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 APT56_24640 cba07847558f8797d593b79e5ca76748 377 Pfam PF00534 Glycosyl transferases group 1 186 352 3.2E-29 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_24640 cba07847558f8797d593b79e5ca76748 377 Gene3D G3DSA:3.40.50.2000 28 372 2.5E-57 T 11-10-2018 APT56_24640 cba07847558f8797d593b79e5ca76748 377 Gene3D G3DSA:3.40.50.2000 182 359 2.5E-57 T 11-10-2018 APT56_24640 cba07847558f8797d593b79e5ca76748 377 Pfam PF13477 Glycosyl transferase 4-like 6 156 1.0E-25 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_24640 cba07847558f8797d593b79e5ca76748 377 SUPERFAMILY SSF53756 25 375 1.21E-69 T 11-10-2018 APT56_00890 c17839a8f5d1869428262c917516cef8 403 Gene3D G3DSA:3.40.50.2300 149 280 1.1E-109 T 11-10-2018 APT56_00890 c17839a8f5d1869428262c917516cef8 403 Gene3D G3DSA:3.40.50.2300 33 341 1.1E-109 T 11-10-2018 APT56_00890 c17839a8f5d1869428262c917516cef8 403 SUPERFAMILY SSF53822 30 401 2.76E-89 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_00890 c17839a8f5d1869428262c917516cef8 403 Pfam PF13458 Periplasmic binding protein 30 366 1.7E-85 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_17275 fcd408ece0fcb8435b411abbfab46ca0 240 Pfam PF03466 LysR substrate binding domain 41 238 8.3E-27 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_17275 fcd408ece0fcb8435b411abbfab46ca0 240 SUPERFAMILY SSF53850 44 239 8.69E-31 T 11-10-2018 APT56_17275 fcd408ece0fcb8435b411abbfab46ca0 240 Gene3D G3DSA:3.40.190.290 44 237 1.1E-42 T 11-10-2018 APT56_02125 d1c0e29e4b5fe83696feccddb90b61a4 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 323 8.6E-87 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_02125 d1c0e29e4b5fe83696feccddb90b61a4 330 SUPERFAMILY SSF53850 119 298 6.3E-12 T 11-10-2018 APT56_02125 d1c0e29e4b5fe83696feccddb90b61a4 330 Gene3D G3DSA:3.40.190.150 36 320 1.5E-113 T 11-10-2018 APT56_02125 d1c0e29e4b5fe83696feccddb90b61a4 330 Gene3D G3DSA:3.40.190.10 133 255 1.5E-113 T 11-10-2018 APT56_02125 d1c0e29e4b5fe83696feccddb90b61a4 330 PIRSF PIRSF017082 1 329 5.4E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00415 1a2bc5d1281a97eaf1e7ba32cc63fd2d 390 Gene3D G3DSA:3.50.50.60 9 357 1.6E-88 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00415 1a2bc5d1281a97eaf1e7ba32cc63fd2d 390 Pfam PF01266 FAD dependent oxidoreductase 9 350 3.7E-57 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_00415 1a2bc5d1281a97eaf1e7ba32cc63fd2d 390 SUPERFAMILY SSF51905 7 369 8.2E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00415 1a2bc5d1281a97eaf1e7ba32cc63fd2d 390 Gene3D G3DSA:3.30.9.10 87 313 1.6E-88 T 11-10-2018 APT56_00415 1a2bc5d1281a97eaf1e7ba32cc63fd2d 390 SUPERFAMILY SSF54373 231 306 1.44E-6 T 11-10-2018 APT56_22245 92b347ad28fabd711ad804402eabd716 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 213 1.3E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_22245 92b347ad28fabd711ad804402eabd716 230 Gene3D G3DSA:1.10.3720.10 1 214 6.0E-57 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22245 92b347ad28fabd711ad804402eabd716 230 SUPERFAMILY SSF161098 13 207 5.1E-48 T 11-10-2018 IPR035906 MetI-like superfamily APT56_22245 92b347ad28fabd711ad804402eabd716 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 107 1.3E-30 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_25575 a0dbe2d6dcf23b474bc6310465e5caae 242 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 6 239 6.2E-90 T 11-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail APT56_25575 a0dbe2d6dcf23b474bc6310465e5caae 242 Pfam PF05100 Phage minor tail protein L 24 239 5.1E-75 T 11-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail APT56_05745 cd867f2a22eef42f1db22f63d5dcd626 211 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 19 208 7.4E-15 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 APT56_05745 cd867f2a22eef42f1db22f63d5dcd626 211 SUPERFAMILY SSF89392 30 210 8.63E-43 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX APT56_05745 cd867f2a22eef42f1db22f63d5dcd626 211 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 39 200 7.7E-44 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like APT56_05745 cd867f2a22eef42f1db22f63d5dcd626 211 Gene3D G3DSA:2.50.20.10 28 210 1.6E-48 T 11-10-2018 APT56_05745 cd867f2a22eef42f1db22f63d5dcd626 211 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 14 211 28.049 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 APT56_15530 87a97c5eb77f24f912d60839ebf6e3ee 352 Gene3D G3DSA:3.20.20.70 1 352 3.6E-136 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_15530 87a97c5eb77f24f912d60839ebf6e3ee 352 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 328 3.6E-79 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 APT56_15530 87a97c5eb77f24f912d60839ebf6e3ee 352 SUPERFAMILY SSF51395 1 349 3.67E-119 T 11-10-2018 APT56_27280 e9362cbb7653ec6c49cef09178d22674 288 SUPERFAMILY SSF56752 9 282 5.23E-74 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 APT56_27280 e9362cbb7653ec6c49cef09178d22674 288 Gene3D G3DSA:3.30.470.10 6 126 1.1E-37 T 11-10-2018 APT56_27280 e9362cbb7653ec6c49cef09178d22674 288 Pfam PF01063 Amino-transferase class IV 37 259 1.7E-40 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 APT56_27280 e9362cbb7653ec6c49cef09178d22674 288 Gene3D G3DSA:3.20.10.10 127 287 1.5E-53 T 11-10-2018 APT56_27160 2837efad1ff08ba8933bb8d35ca11169 475 Gene3D G3DSA:3.90.1300.10 10 460 5.0E-119 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_27160 2837efad1ff08ba8933bb8d35ca11169 475 Pfam PF01425 Amidase 30 451 8.5E-93 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_27160 2837efad1ff08ba8933bb8d35ca11169 475 ProSitePatterns PS00571 Amidases signature. 158 189 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT56_27160 2837efad1ff08ba8933bb8d35ca11169 475 SUPERFAMILY SSF75304 7 468 7.06E-115 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_02645 9b62b0292239cdc02bef95ad5827a9f6 212 Pfam PF02036 SCP-2 sterol transfer family 18 112 9.7E-10 T 11-10-2018 IPR003033 SCP2 sterol-binding domain APT56_26760 8b7605a360cf7cd51315a54d90c59a93 378 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 332 356 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_26760 8b7605a360cf7cd51315a54d90c59a93 378 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 10 377 28.004 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_26760 8b7605a360cf7cd51315a54d90c59a93 378 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 16 374 2.1E-128 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_26760 8b7605a360cf7cd51315a54d90c59a93 378 Pfam PF01098 Cell cycle protein 20 374 5.0E-101 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_01715 503a884ad1b9863d46d318cb56d379fa 331 Pfam PF05229 Spore Coat Protein U domain 19 167 1.3E-14 T 11-10-2018 IPR007893 Spore coat protein U APT56_01715 503a884ad1b9863d46d318cb56d379fa 331 Pfam PF05229 Spore Coat Protein U domain 196 328 3.5E-36 T 11-10-2018 IPR007893 Spore coat protein U APT56_01715 503a884ad1b9863d46d318cb56d379fa 331 SMART SM00972 95 170 4.6E-6 T 11-10-2018 IPR007893 Spore coat protein U APT56_01715 503a884ad1b9863d46d318cb56d379fa 331 SMART SM00972 269 328 1.1E-24 T 11-10-2018 IPR007893 Spore coat protein U APT56_16145 48530fa7d786c2a6343b7057bca4b043 230 Gene3D G3DSA:1.25.40.10 6 108 1.4E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_16145 48530fa7d786c2a6343b7057bca4b043 230 SUPERFAMILY SSF48452 25 92 9.11E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_02310 5af971f3639c85f96acc75aa6a3f43d0 277 Gene3D G3DSA:1.10.12.10 216 275 2.7E-31 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_02310 5af971f3639c85f96acc75aa6a3f43d0 277 Gene3D G3DSA:3.90.226.10 2 215 2.5E-61 T 11-10-2018 APT56_02310 5af971f3639c85f96acc75aa6a3f43d0 277 Pfam PF00378 Enoyl-CoA hydratase/isomerase 37 272 9.8E-40 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_02310 5af971f3639c85f96acc75aa6a3f43d0 277 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 116 136 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 APT56_02310 5af971f3639c85f96acc75aa6a3f43d0 277 SUPERFAMILY SSF52096 35 271 1.16E-63 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_22075 3030aebe813d512f59dfbbfaf7ed6add 244 Gene3D G3DSA:3.90.226.10 2 240 4.8E-66 T 11-10-2018 APT56_22075 3030aebe813d512f59dfbbfaf7ed6add 244 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 222 2.1E-51 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_22075 3030aebe813d512f59dfbbfaf7ed6add 244 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 APT56_22075 3030aebe813d512f59dfbbfaf7ed6add 244 SUPERFAMILY SSF52096 7 235 5.57E-66 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_10860 2da3bda4013a87e6f64a3ee004ff79b3 209 Gene3D G3DSA:3.40.50.150 5 209 1.6E-41 T 11-10-2018 APT56_10860 2da3bda4013a87e6f64a3ee004ff79b3 209 Pfam PF08241 Methyltransferase domain 55 146 2.4E-16 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 APT56_10860 2da3bda4013a87e6f64a3ee004ff79b3 209 SUPERFAMILY SSF53335 18 193 2.13E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_22325 964656d19880011c91bd2ffb40c9b6e9 479 ProSitePatterns PS00571 Amidases signature. 150 181 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT56_22325 964656d19880011c91bd2ffb40c9b6e9 479 Gene3D G3DSA:3.90.1300.10 4 477 5.0E-131 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_22325 964656d19880011c91bd2ffb40c9b6e9 479 Pfam PF01425 Amidase 37 457 9.9E-81 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_22325 964656d19880011c91bd2ffb40c9b6e9 479 SUPERFAMILY SSF75304 3 466 1.02E-106 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_24735 9c48ca757400bd54643fc5650b8f8b7a 313 SUPERFAMILY SSF161098 92 297 5.36E-18 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24735 9c48ca757400bd54643fc5650b8f8b7a 313 Gene3D G3DSA:1.10.3720.10 85 305 7.6E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24735 9c48ca757400bd54643fc5650b8f8b7a 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 313 2.5E-40 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13935 77b9bacf99bca43446fd1161cd70156c 208 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 76 5.8E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_13935 77b9bacf99bca43446fd1161cd70156c 208 SUPERFAMILY SSF52833 2 85 7.33E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_13935 77b9bacf99bca43446fd1161cd70156c 208 Pfam PF14497 Glutathione S-transferase, C-terminal domain 123 203 6.1E-10 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_13935 77b9bacf99bca43446fd1161cd70156c 208 Gene3D G3DSA:3.40.30.10 4 87 3.0E-22 T 11-10-2018 APT56_13935 77b9bacf99bca43446fd1161cd70156c 208 Gene3D G3DSA:1.20.1050.10 88 195 1.0E-41 T 11-10-2018 APT56_13935 77b9bacf99bca43446fd1161cd70156c 208 SUPERFAMILY SSF47616 83 203 2.23E-22 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 Pfam PF00381 PTS HPr component phosphorylation site 5 82 2.4E-27 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.4E-15 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.4E-15 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.4E-15 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 Gene3D G3DSA:3.30.1340.10 1 88 1.2E-31 T 11-10-2018 IPR035895 HPr-like superfamily APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 SUPERFAMILY SSF55594 1 87 4.84E-28 T 11-10-2018 IPR035895 HPr-like superfamily APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 5.0E-29 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APT56_09990 f2dc7e06929f846bf95dc9cf8da8fbeb 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 Pfam PF00009 Elongation factor Tu GTP binding domain 10 273 2.6E-52 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 Gene3D G3DSA:3.30.70.3280 386 526 4.0E-48 T 11-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 SUPERFAMILY SSF54980 388 459 3.2E-17 T 11-10-2018 IPR035647 EF-G domain III/V-like APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 PRINTS PR00315 GTP-binding elongation factor signature 134 143 1.2E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 PRINTS PR00315 GTP-binding elongation factor signature 62 70 1.2E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 PRINTS PR00315 GTP-binding elongation factor signature 98 109 1.2E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.2E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 PRINTS PR00315 GTP-binding elongation factor signature 82 92 1.2E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 SUPERFAMILY SSF50447 257 387 6.85E-27 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 1 524 51.043 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 Pfam PF03144 Elongation factor Tu domain 2 310 376 3.2E-7 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 5 526 9.9E-212 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 55 70 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 Pfam PF16658 Class II release factor RF3, C-terminal domain 383 511 1.5E-44 T 11-10-2018 IPR032090 Peptide chain release factor 3, C-terminal APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 Gene3D G3DSA:3.40.50.300 11 373 1.1E-104 T 11-10-2018 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 144 1.2E-22 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 SUPERFAMILY SSF52540 7 273 5.43E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01000 c409604a38fe8f2dc912d83baa1b7d19 535 Gene3D G3DSA:3.40.50.300 18 271 1.1E-104 T 11-10-2018 APT56_02525 be74c3711b928bc8f39641b630e51846 415 Gene3D G3DSA:1.20.1250.20 211 406 1.9E-13 T 11-10-2018 APT56_02525 be74c3711b928bc8f39641b630e51846 415 Gene3D G3DSA:1.20.1250.20 9 203 7.2E-15 T 11-10-2018 APT56_02525 be74c3711b928bc8f39641b630e51846 415 SUPERFAMILY SSF103473 12 405 6.02E-39 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_02525 be74c3711b928bc8f39641b630e51846 415 Pfam PF07690 Major Facilitator Superfamily 17 365 2.0E-27 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_06440 057a90ebfc4d1d5359a6d05e5b923619 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 1 102 21.039 T 11-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 APT56_06440 057a90ebfc4d1d5359a6d05e5b923619 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 98 6.9E-25 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 111 121 4.2E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 68 79 4.2E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 350 367 4.2E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 170 181 4.2E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 Gene3D G3DSA:2.40.160.10 10 393 1.4E-79 T 11-10-2018 IPR023614 Porin domain superfamily APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 PRINTS PR00184 Neisseria sp. porin signature 70 95 1.6E-7 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 PRINTS PR00184 Neisseria sp. porin signature 347 371 1.6E-7 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 PRINTS PR00184 Neisseria sp. porin signature 169 186 1.6E-7 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 SUPERFAMILY SSF56935 21 393 5.8E-70 T 11-10-2018 APT56_23675 3016c5578f3b388f665b8f78d59dd3d0 393 Pfam PF13609 Gram-negative porin 7 373 1.2E-55 T 11-10-2018 APT56_17835 e723cd8321fdad01729d29a9643476cc 285 Gene3D G3DSA:3.20.20.70 2 284 1.7E-97 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_17835 e723cd8321fdad01729d29a9643476cc 285 SUPERFAMILY SSF51569 6 279 9.16E-102 T 11-10-2018 APT56_17835 e723cd8321fdad01729d29a9643476cc 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 19 276 1.1E-116 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT56_17835 e723cd8321fdad01729d29a9643476cc 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 14 278 49.67 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT56_17835 e723cd8321fdad01729d29a9643476cc 285 Pfam PF00793 DAHP synthetase I family 11 276 5.1E-67 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APT56_17035 56862a68c568e35eb2059e2f4ff88a2f 323 PIRSF PIRSF017082 1 322 1.6E-79 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_17035 56862a68c568e35eb2059e2f4ff88a2f 323 Gene3D G3DSA:3.40.190.150 29 313 2.3E-102 T 11-10-2018 APT56_17035 56862a68c568e35eb2059e2f4ff88a2f 323 SUPERFAMILY SSF53850 114 283 1.9E-13 T 11-10-2018 APT56_17035 56862a68c568e35eb2059e2f4ff88a2f 323 Gene3D G3DSA:3.40.190.10 125 248 2.3E-102 T 11-10-2018 APT56_17035 56862a68c568e35eb2059e2f4ff88a2f 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 49 317 1.1E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_06205 2b655d4c0129ad84ec4c25bfcadacb88 102 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 3.8E-30 T 11-10-2018 IPR010696 Protein of unknown function DUF1272 APT56_10075 eb9cbfdc2f98aaea529c3d420d95dfb3 340 Pfam PF03837 RecT family 62 250 1.4E-47 T 11-10-2018 IPR018330 RecT family GO:0003677|GO:0006259 APT56_10075 eb9cbfdc2f98aaea529c3d420d95dfb3 340 TIGRFAM TIGR00616 rect: recombinase, phage RecT family 7 246 1.0E-65 T 11-10-2018 IPR004590 DNA single-strand annealing protein RecT GO:0003677|GO:0006259 APT56_00395 6a54f77506303d81b0bf4213795417a7 295 SUPERFAMILY SSF161098 20 290 2.35E-55 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00395 6a54f77506303d81b0bf4213795417a7 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 287 1.2E-9 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00395 6a54f77506303d81b0bf4213795417a7 295 Gene3D G3DSA:1.10.3720.10 20 292 2.3E-59 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19150 5d44e0fcff92b7654196842674633b96 139 Pfam PF02472 Biopolymer transport protein ExbD/TolR 18 136 1.8E-27 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 APT56_19150 5d44e0fcff92b7654196842674633b96 139 Gene3D G3DSA:3.30.420.270 66 133 4.3E-12 T 11-10-2018 APT56_27210 31adceab35c5d6fe9500bf2bb1fc143d 288 SUPERFAMILY SSF81345 11 270 6.67E-24 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_27210 31adceab35c5d6fe9500bf2bb1fc143d 288 Pfam PF00950 ABC 3 transport family 14 271 2.5E-51 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 APT56_22930 ba466b23a34480f13f1cb731e5689f3a 555 SUPERFAMILY SSF103473 26 490 6.15E-45 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_22930 ba466b23a34480f13f1cb731e5689f3a 555 Gene3D G3DSA:1.20.1250.20 24 487 1.3E-32 T 11-10-2018 APT56_22930 ba466b23a34480f13f1cb731e5689f3a 555 Pfam PF07690 Major Facilitator Superfamily 40 441 1.3E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_06330 ad9c8943b62c3ac2c997242dd5c7d274 391 Gene3D G3DSA:1.10.287.470 96 169 1.6E-99 T 11-10-2018 APT56_06330 ad9c8943b62c3ac2c997242dd5c7d274 391 Gene3D G3DSA:2.40.30.170 49 301 1.6E-99 T 11-10-2018 APT56_06330 ad9c8943b62c3ac2c997242dd5c7d274 391 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 291 3.6E-12 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APT56_06330 ad9c8943b62c3ac2c997242dd5c7d274 391 SUPERFAMILY SSF111369 50 297 1.15E-74 T 11-10-2018 APT56_06330 ad9c8943b62c3ac2c997242dd5c7d274 391 Gene3D G3DSA:2.40.420.20 302 370 1.6E-99 T 11-10-2018 APT56_06330 ad9c8943b62c3ac2c997242dd5c7d274 391 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 372 5.7E-78 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_06330 ad9c8943b62c3ac2c997242dd5c7d274 391 Gene3D G3DSA:2.40.50.100 61 205 1.6E-99 T 11-10-2018 APT56_01050 d97d983d5a4d8bc1cf33ea415b74b37c 462 Pfam PF01926 50S ribosome-binding GTPase 7 153 4.0E-17 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_01050 d97d983d5a4d8bc1cf33ea415b74b37c 462 Gene3D G3DSA:3.40.50.300 2 185 2.4E-28 T 11-10-2018 APT56_01050 d97d983d5a4d8bc1cf33ea415b74b37c 462 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 69 5.5E-12 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APT56_01050 d97d983d5a4d8bc1cf33ea415b74b37c 462 SUPERFAMILY SSF52540 3 167 2.36E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01050 d97d983d5a4d8bc1cf33ea415b74b37c 462 Pfam PF11981 Domain of unknown function (DUF3482) 166 451 8.6E-99 T 11-10-2018 IPR021871 Protein of unknown function DUF3482 APT56_22640 4985e3422e5a69be18a06946f59ce68c 386 Gene3D G3DSA:3.40.640.10 5 386 2.2E-122 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_22640 4985e3422e5a69be18a06946f59ce68c 386 Pfam PF00155 Aminotransferase class I and II 32 379 7.8E-57 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_22640 4985e3422e5a69be18a06946f59ce68c 386 SUPERFAMILY SSF53383 22 384 1.61E-102 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 ProSitePatterns PS00056 Ribosomal protein S17 signature. 64 76 - T 11-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 PRINTS PR00973 Ribosomal protein S17 family signature 32 55 6.8E-10 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 PRINTS PR00973 Ribosomal protein S17 family signature 74 81 6.8E-10 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 PRINTS PR00973 Ribosomal protein S17 family signature 64 74 6.8E-10 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 Pfam PF00366 Ribosomal protein S17 18 84 8.4E-31 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 SUPERFAMILY SSF50249 12 91 9.85E-31 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 14 84 6.7E-35 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 13 88 24.491 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 Gene3D G3DSA:2.40.50.140 9 92 2.6E-33 T 11-10-2018 APT56_27800 4d26bbfe1fbf0f5afec5a7a97d7aa594 93 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 13 84 6.0E-36 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_06900 9d7686e31b1326721d1297390c422033 501 Gene3D G3DSA:3.40.630.10 181 501 5.4E-134 T 11-10-2018 APT56_06900 9d7686e31b1326721d1297390c422033 501 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 354 361 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 4 501 35.783 T 11-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 SUPERFAMILY SSF52949 1 184 3.12E-29 T 11-10-2018 APT56_06900 9d7686e31b1326721d1297390c422033 501 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 493 2.3E-121 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 SUPERFAMILY SSF53187 179 499 4.08E-118 T 11-10-2018 APT56_06900 9d7686e31b1326721d1297390c422033 501 PRINTS PR00481 Cytosol aminopeptidase signature 378 393 4.8E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 PRINTS PR00481 Cytosol aminopeptidase signature 291 312 4.8E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 PRINTS PR00481 Cytosol aminopeptidase signature 328 349 4.8E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 PRINTS PR00481 Cytosol aminopeptidase signature 269 286 4.8E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 PRINTS PR00481 Cytosol aminopeptidase signature 350 370 4.8E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 20 142 1.1E-19 T 11-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APT56_06900 9d7686e31b1326721d1297390c422033 501 Gene3D G3DSA:3.40.220.10 1 180 3.0E-31 T 11-10-2018 APT56_23030 87d4a36936ca9eea5ff93c7a6d243367 380 Gene3D G3DSA:3.10.310.10 5 353 4.4E-124 T 11-10-2018 APT56_23030 87d4a36936ca9eea5ff93c7a6d243367 380 SUPERFAMILY SSF54506 4 166 4.55E-64 T 11-10-2018 APT56_23030 87d4a36936ca9eea5ff93c7a6d243367 380 Gene3D G3DSA:3.10.310.10 167 340 4.4E-124 T 11-10-2018 APT56_23030 87d4a36936ca9eea5ff93c7a6d243367 380 SUPERFAMILY SSF54506 171 357 5.1E-55 T 11-10-2018 APT56_23030 87d4a36936ca9eea5ff93c7a6d243367 380 Pfam PF04303 PrpF protein 5 356 4.2E-122 T 11-10-2018 IPR007400 PrpF protein APT56_15025 d8e2dd64bf4aeffdf996577a230af8ad 448 Pfam PF01425 Amidase 21 436 5.4E-85 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_15025 d8e2dd64bf4aeffdf996577a230af8ad 448 Gene3D G3DSA:3.90.1300.10 4 447 1.7E-124 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_15025 d8e2dd64bf4aeffdf996577a230af8ad 448 ProSitePatterns PS00571 Amidases signature. 153 184 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT56_15025 d8e2dd64bf4aeffdf996577a230af8ad 448 SUPERFAMILY SSF75304 4 446 1.31E-116 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 SMART SM00091 16 82 1.4E-10 T 11-10-2018 IPR000014 PAS domain APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 Gene3D G3DSA:3.30.565.10 250 376 1.4E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 17 142 3.2E-19 T 11-10-2018 IPR000014 PAS domain APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 Pfam PF13426 PAS domain 27 133 6.1E-13 T 11-10-2018 IPR000014 PAS domain APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 Gene3D G3DSA:3.30.450.20 14 152 1.6E-27 T 11-10-2018 APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 SUPERFAMILY SSF55785 27 143 1.69E-22 T 11-10-2018 IPR035965 PAS domain superfamily APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 Pfam PF07730 Histidine kinase 181 246 5.7E-14 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 SMART SM00387 287 379 4.7E-4 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_19080 5566a39edc06f0e351ea40ef65c70c4d 380 SUPERFAMILY SSF55874 259 377 1.15E-16 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_12535 998e9fcc7c582c9b520aa43dc78ceec5 400 Pfam PF07394 Protein of unknown function (DUF1501) 32 381 1.3E-42 T 11-10-2018 IPR010869 Protein of unknown function DUF1501 APT56_09790 c06ddab65cb768713c7c17096cb9eadf 358 SUPERFAMILY SSF53659 1 357 1.39E-122 T 11-10-2018 APT56_09790 c06ddab65cb768713c7c17096cb9eadf 358 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 2.3E-149 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 APT56_09790 c06ddab65cb768713c7c17096cb9eadf 358 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 51.588 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 APT56_09790 c06ddab65cb768713c7c17096cb9eadf 358 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 353 3.1E-133 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT56_09790 c06ddab65cb768713c7c17096cb9eadf 358 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 APT56_09790 c06ddab65cb768713c7c17096cb9eadf 358 Gene3D G3DSA:3.40.718.10 1 357 1.7E-155 T 11-10-2018 APT56_09790 c06ddab65cb768713c7c17096cb9eadf 358 SMART SM01329 4 353 1.2E-207 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APT56_20075 1fafb95f406ade9f7042e852d7f85198 406 SUPERFAMILY SSF142764 5 399 4.45E-82 T 11-10-2018 APT56_20075 1fafb95f406ade9f7042e852d7f85198 406 Gene3D G3DSA:3.40.50.10840 2 230 2.8E-57 T 11-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily APT56_20075 1fafb95f406ade9f7042e852d7f85198 406 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 237 392 2.1E-16 T 11-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain APT56_20075 1fafb95f406ade9f7042e852d7f85198 406 Gene3D G3DSA:3.40.980.20 231 401 9.2E-16 T 11-10-2018 APT56_20075 1fafb95f406ade9f7042e852d7f85198 406 Pfam PF07005 Putative sugar-binding N-terminal domain 5 221 2.0E-48 T 11-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain APT56_17785 520a5a174ccf928f40066921f61f51aa 131 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 104 122 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 APT56_17785 520a5a174ccf928f40066921f61f51aa 131 Gene3D G3DSA:3.30.1330.40 1 131 6.0E-38 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_17785 520a5a174ccf928f40066921f61f51aa 131 SUPERFAMILY SSF55298 3 128 4.56E-36 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_17785 520a5a174ccf928f40066921f61f51aa 131 Pfam PF01042 Endoribonuclease L-PSP 9 127 3.0E-30 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_10735 66fb7859d316527ed052f1368a96e353 247 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 242 1.3E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_10735 66fb7859d316527ed052f1368a96e353 247 SUPERFAMILY SSF161098 49 230 3.14E-24 T 11-10-2018 IPR035906 MetI-like superfamily APT56_10735 66fb7859d316527ed052f1368a96e353 247 Gene3D G3DSA:1.10.3720.10 47 244 3.2E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_08355 04b27e13af1aa268618d91dab97b53af 231 SUPERFAMILY SSF56529 20 231 1.96E-71 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_08355 04b27e13af1aa268618d91dab97b53af 231 Gene3D G3DSA:3.90.850.10 1 231 1.8E-83 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_08355 04b27e13af1aa268618d91dab97b53af 231 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 27 230 1.9E-51 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_13620 c01cb666751fc0deeb6a2edbed32f271 690 SUPERFAMILY SSF56935 39 689 1.35E-92 T 11-10-2018 APT56_13620 c01cb666751fc0deeb6a2edbed32f271 690 Gene3D G3DSA:2.170.130.10 45 157 2.8E-14 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_13620 c01cb666751fc0deeb6a2edbed32f271 690 Pfam PF00593 TonB dependent receptor 206 689 2.2E-47 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_13620 c01cb666751fc0deeb6a2edbed32f271 690 Pfam PF07715 TonB-dependent Receptor Plug Domain 60 151 1.6E-13 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_13620 c01cb666751fc0deeb6a2edbed32f271 690 Gene3D G3DSA:2.40.170.20 165 689 3.4E-73 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_13620 c01cb666751fc0deeb6a2edbed32f271 690 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 54 690 8.6E-272 T 11-10-2018 IPR010100 TonB-dependent copper receptor APT56_23980 4e924aa589ac700c6d9fe6817f0af0c6 107 SUPERFAMILY SSF46785 3 93 6.07E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23980 4e924aa589ac700c6d9fe6817f0af0c6 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.3E-5 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_23980 4e924aa589ac700c6d9fe6817f0af0c6 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 1.3E-5 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_23980 4e924aa589ac700c6d9fe6817f0af0c6 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 1.3E-5 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_23980 4e924aa589ac700c6d9fe6817f0af0c6 107 Gene3D G3DSA:1.10.10.10 1 93 6.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23980 4e924aa589ac700c6d9fe6817f0af0c6 107 Pfam PF12840 Helix-turn-helix domain 10 69 2.5E-14 T 11-10-2018 APT56_23980 4e924aa589ac700c6d9fe6817f0af0c6 107 SMART SM00418 9 89 7.4E-9 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_21170 651f360e439d2c3355041ed83be3cc59 190 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 54 76 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APT56_21170 651f360e439d2c3355041ed83be3cc59 190 PIRSF PIRSF000847 1 190 2.6E-44 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 APT56_21170 651f360e439d2c3355041ed83be3cc59 190 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 76 1.2E-16 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APT56_21170 651f360e439d2c3355041ed83be3cc59 190 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 186 1.0E-50 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 APT56_21170 651f360e439d2c3355041ed83be3cc59 190 Gene3D G3DSA:1.20.120.1760 4 190 9.4E-12 T 11-10-2018 APT56_11475 49d37d03697dc4edf097c37005306fbe 209 SUPERFAMILY SSF56214 65 133 2.88E-9 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_26020 6ac896d229d84cc5a21e089bde5138f2 334 Pfam PF02653 Branched-chain amino acid transport system / permease component 29 291 1.4E-43 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_15850 32f4950c5565f0966e8f4ded541e231e 481 Gene3D G3DSA:1.20.1250.20 261 470 3.7E-16 T 11-10-2018 APT56_15850 32f4950c5565f0966e8f4ded541e231e 481 SUPERFAMILY SSF103473 7 466 5.89E-61 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_15850 32f4950c5565f0966e8f4ded541e231e 481 Pfam PF07690 Major Facilitator Superfamily 17 412 1.4E-44 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_15850 32f4950c5565f0966e8f4ded541e231e 481 Gene3D G3DSA:1.20.1720.10 13 228 6.6E-50 T 11-10-2018 APT56_21895 06cdd8c5802793b1d686af8c7a6a76c5 200 SUPERFAMILY SSF75471 5 91 1.83E-23 T 11-10-2018 IPR035920 YhbY-like superfamily APT56_21895 06cdd8c5802793b1d686af8c7a6a76c5 200 Gene3D G3DSA:3.30.110.60 4 101 1.9E-27 T 11-10-2018 IPR035920 YhbY-like superfamily APT56_21895 06cdd8c5802793b1d686af8c7a6a76c5 200 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 14 90 8.0E-36 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 APT56_21895 06cdd8c5802793b1d686af8c7a6a76c5 200 Pfam PF01985 CRS1 / YhbY (CRM) domain 6 89 3.3E-16 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 APT56_21895 06cdd8c5802793b1d686af8c7a6a76c5 200 SMART SM01103 6 89 2.1E-35 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 APT56_20115 53d8a650ef03fc40ec85699be9d4b36e 208 SUPERFAMILY SSF51182 10 195 1.1E-50 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_20115 53d8a650ef03fc40ec85699be9d4b36e 208 Gene3D G3DSA:2.60.120.10 45 188 4.8E-56 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_20115 53d8a650ef03fc40ec85699be9d4b36e 208 Pfam PF05995 Cysteine dioxygenase type I 77 158 1.2E-7 T 11-10-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 APT56_11755 d719369fa1cee5246463f6740b120bd8 199 Gene3D G3DSA:1.10.10.60 5 51 1.0E-19 T 11-10-2018 APT56_11755 d719369fa1cee5246463f6740b120bd8 199 SUPERFAMILY SSF46689 5 74 4.36E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_11755 d719369fa1cee5246463f6740b120bd8 199 Gene3D G3DSA:1.10.357.10 53 186 3.1E-27 T 11-10-2018 APT56_11755 d719369fa1cee5246463f6740b120bd8 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.7E-12 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_11755 d719369fa1cee5246463f6740b120bd8 199 SUPERFAMILY SSF48498 84 186 1.63E-18 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_11755 d719369fa1cee5246463f6740b120bd8 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.8E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_11755 d719369fa1cee5246463f6740b120bd8 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.8E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06315 527f1ef37246660925b7b8cfcbfd6569 220 SUPERFAMILY SSF46785 20 197 1.17E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_06315 527f1ef37246660925b7b8cfcbfd6569 220 ProSitePatterns PS00261 Glycoprotein hormones beta chain signature 1. 178 184 - T 11-10-2018 IPR018245 Gonadotropin, beta subunit, conserved site GO:0005179|GO:0005576 APT56_06315 527f1ef37246660925b7b8cfcbfd6569 220 Gene3D G3DSA:1.10.10.10 15 119 2.4E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06315 527f1ef37246660925b7b8cfcbfd6569 220 Pfam PF03551 Transcriptional regulator PadR-like family 49 86 1.2E-4 T 11-10-2018 IPR005149 Transcription regulator PadR, N-terminal APT56_13145 924c2c3e0ae2b4e5a9548ea9e7fec399 279 Gene3D G3DSA:3.40.190.10 32 250 1.4E-42 T 11-10-2018 APT56_13145 924c2c3e0ae2b4e5a9548ea9e7fec399 279 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 252 1.2E-32 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_13145 924c2c3e0ae2b4e5a9548ea9e7fec399 279 SMART SM00062 40 262 4.2E-28 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_13145 924c2c3e0ae2b4e5a9548ea9e7fec399 279 SUPERFAMILY SSF53850 36 257 2.09E-40 T 11-10-2018 APT56_13145 924c2c3e0ae2b4e5a9548ea9e7fec399 279 Gene3D G3DSA:3.40.190.10 129 221 1.4E-42 T 11-10-2018 APT56_11280 b3d77ee93e6257d76654fab544fdae50 632 SUPERFAMILY SSF90123 21 328 8.11E-47 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_11280 b3d77ee93e6257d76654fab544fdae50 632 Pfam PF00005 ABC transporter 372 520 3.1E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_11280 b3d77ee93e6257d76654fab544fdae50 632 Gene3D G3DSA:3.40.50.300 344 603 1.4E-91 T 11-10-2018 APT56_11280 b3d77ee93e6257d76654fab544fdae50 632 SMART SM00382 380 566 2.2E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11280 b3d77ee93e6257d76654fab544fdae50 632 Pfam PF00664 ABC transporter transmembrane region 33 307 8.1E-19 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_11280 b3d77ee93e6257d76654fab544fdae50 632 Gene3D G3DSA:1.20.1560.10 4 341 5.5E-50 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_11280 b3d77ee93e6257d76654fab544fdae50 632 SUPERFAMILY SSF52540 348 591 2.09E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11280 b3d77ee93e6257d76654fab544fdae50 632 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_08095 5ea62e21474b9596eac43590a71ef540 151 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 5.1E-22 T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08095 5ea62e21474b9596eac43590a71ef540 151 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 2.2E-23 T 11-10-2018 IPR020069 Ribosomal protein L9, C-terminal APT56_08095 5ea62e21474b9596eac43590a71ef540 151 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08095 5ea62e21474b9596eac43590a71ef540 151 SUPERFAMILY SSF55658 1 56 2.62E-18 T 11-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal APT56_08095 5ea62e21474b9596eac43590a71ef540 151 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.457 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_08095 5ea62e21474b9596eac43590a71ef540 151 Gene3D G3DSA:3.40.5.10 1 62 1.2E-22 T 11-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08095 5ea62e21474b9596eac43590a71ef540 151 Gene3D G3DSA:3.10.430.100 63 149 3.2E-24 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily APT56_08095 5ea62e21474b9596eac43590a71ef540 151 SUPERFAMILY SSF55653 59 148 1.83E-22 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily APT56_08095 5ea62e21474b9596eac43590a71ef540 151 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 2.9E-41 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_13710 526d62f0527f332e1aa5113af53ac71a 361 Pfam PF01699 Sodium/calcium exchanger protein 216 357 1.2E-5 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 APT56_13710 526d62f0527f332e1aa5113af53ac71a 361 Pfam PF01699 Sodium/calcium exchanger protein 42 185 5.9E-15 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 APT56_13710 526d62f0527f332e1aa5113af53ac71a 361 Gene3D G3DSA:1.20.58.1130 48 248 1.4E-14 T 11-10-2018 APT56_13710 526d62f0527f332e1aa5113af53ac71a 361 Gene3D G3DSA:1.20.1420.30 67 350 1.4E-14 T 11-10-2018 APT56_08940 ffd06e69bbffdf358aead811a9c00eae 425 PIRSF PIRSF006066 1 425 2.8E-163 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_08940 ffd06e69bbffdf358aead811a9c00eae 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 413 6.0E-116 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_08940 ffd06e69bbffdf358aead811a9c00eae 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 416 1.1E-131 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_11510 ae5804e98344ced06c3eec9ebb098cff 497 PIRSF PIRSF012702 1 497 4.1E-169 T 11-10-2018 IPR009197 Microcystin LR degradation protein MlrC APT56_11510 ae5804e98344ced06c3eec9ebb098cff 497 Pfam PF07171 MlrC C-terminus 304 481 5.6E-56 T 11-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal APT56_11510 ae5804e98344ced06c3eec9ebb098cff 497 Pfam PF07364 Metallopeptidase family M81 3 291 4.4E-98 T 11-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 SUPERFAMILY SSF46785 6 111 1.15E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 SUPERFAMILY SSF53850 90 295 1.52E-36 T 11-10-2018 APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 Gene3D G3DSA:1.10.10.10 4 88 1.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 Pfam PF03466 LysR substrate binding domain 89 294 1.8E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 Gene3D G3DSA:3.40.190.290 90 299 1.0E-32 T 11-10-2018 APT56_02290 94ac6cb4fa0b7935532a3300480ab69a 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 9.7E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18430 5c15399a9187c0f1cf1ec1e622acd1a0 130 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 12 127 18.422 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APT56_18430 5c15399a9187c0f1cf1ec1e622acd1a0 130 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 14 122 3.2E-23 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APT56_27275 f937e1b1ee1001d1c371b25dcc313b94 90 Gene3D G3DSA:3.30.70.260 5 90 9.7E-30 T 11-10-2018 APT56_27275 f937e1b1ee1001d1c371b25dcc313b94 90 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 2 90 21.086 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 APT56_27275 f937e1b1ee1001d1c371b25dcc313b94 90 Pfam PF04359 Protein of unknown function (DUF493) 7 90 1.7E-29 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 APT56_27275 f937e1b1ee1001d1c371b25dcc313b94 90 SUPERFAMILY SSF117991 6 90 1.57E-26 T 11-10-2018 IPR027471 YbeD-like domain superfamily APT56_06930 901cd11b559abae01a20e1e70406c99a 109 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 6 97 9.6E-18 T 11-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 APT56_06930 901cd11b559abae01a20e1e70406c99a 109 PIRSF PIRSF020408 5 108 4.7E-42 T 11-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 Gene3D G3DSA:3.40.50.620 4 332 1.6E-114 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 SUPERFAMILY SSF52374 4 332 1.6E-81 T 11-10-2018 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 1.1E-20 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 150 171 1.1E-20 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 1.1E-20 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 202 212 1.1E-20 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 333 36.702 T 11-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 332 2.5E-95 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 Gene3D G3DSA:1.10.240.10 197 300 1.6E-114 T 11-10-2018 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 Pfam PF07411 Domain of unknown function (DUF1508) 361 404 1.1E-4 T 11-10-2018 IPR010879 Domain of unknown function DUF1508 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 Pfam PF00579 tRNA synthetases class I (W and Y) 3 287 3.3E-54 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 APT56_07295 397d7ff5fa8510a25486dd2176666d58 450 SUPERFAMILY SSF160113 354 406 1.14E-10 T 11-10-2018 IPR036913 YegP-like superfamily APT56_15575 cbf64f7b40953aaafaef4ff15b08e8b7 473 SUPERFAMILY SSF56954 3 472 4.45E-99 T 11-10-2018 APT56_15575 cbf64f7b40953aaafaef4ff15b08e8b7 473 Gene3D G3DSA:1.20.1600.10 58 471 1.4E-122 T 11-10-2018 APT56_15575 cbf64f7b40953aaafaef4ff15b08e8b7 473 Pfam PF02321 Outer membrane efflux protein 68 259 2.8E-25 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_15575 cbf64f7b40953aaafaef4ff15b08e8b7 473 Pfam PF02321 Outer membrane efflux protein 290 463 1.9E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_15575 cbf64f7b40953aaafaef4ff15b08e8b7 473 Gene3D G3DSA:2.20.200.10 105 359 1.4E-122 T 11-10-2018 APT56_15575 cbf64f7b40953aaafaef4ff15b08e8b7 473 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 10 470 1.8E-91 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_21675 d7932d00cd4a4dacee1086c4e5cbc24c 236 SUPERFAMILY SSF47616 106 221 4.09E-22 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_21675 d7932d00cd4a4dacee1086c4e5cbc24c 236 Pfam PF14497 Glutathione S-transferase, C-terminal domain 110 216 3.1E-29 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_21675 d7932d00cd4a4dacee1086c4e5cbc24c 236 Gene3D G3DSA:3.40.30.10 3 234 4.4E-93 T 11-10-2018 APT56_21675 d7932d00cd4a4dacee1086c4e5cbc24c 236 SUPERFAMILY SSF52833 1 84 1.1E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_21675 d7932d00cd4a4dacee1086c4e5cbc24c 236 Gene3D G3DSA:1.20.1050.10 87 206 4.4E-93 T 11-10-2018 APT56_02115 a35a2d29dc816b03ffd75dd730d025e1 221 Gene3D G3DSA:3.40.1080.10 1 218 2.3E-75 T 11-10-2018 APT56_02115 a35a2d29dc816b03ffd75dd730d025e1 221 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 2 220 8.3E-99 T 11-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 APT56_02115 a35a2d29dc816b03ffd75dd730d025e1 221 Pfam PF01144 Coenzyme A transferase 9 218 3.3E-60 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_02115 a35a2d29dc816b03ffd75dd730d025e1 221 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 11-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 APT56_02115 a35a2d29dc816b03ffd75dd730d025e1 221 SUPERFAMILY SSF100950 3 220 2.58E-72 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APT56_02115 a35a2d29dc816b03ffd75dd730d025e1 221 SMART SM00882 6 219 5.0E-67 T 11-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 APT56_18660 c5435f2d5978796b0a613e111aba73a8 248 Gene3D G3DSA:3.40.190.10 15 227 7.0E-22 T 11-10-2018 APT56_18660 c5435f2d5978796b0a613e111aba73a8 248 Gene3D G3DSA:3.40.190.10 103 195 7.0E-22 T 11-10-2018 APT56_18660 c5435f2d5978796b0a613e111aba73a8 248 SMART SM00062 16 239 2.4E-18 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_18660 c5435f2d5978796b0a613e111aba73a8 248 SUPERFAMILY SSF53850 34 233 6.21E-30 T 11-10-2018 APT56_18660 c5435f2d5978796b0a613e111aba73a8 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 232 8.5E-20 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_07195 b4fef8642456f72c60cd8c45fff6e890 150 Pfam PF09980 Predicted membrane protein (DUF2214) 4 149 5.1E-55 T 11-10-2018 IPR018706 Protein of unknown function DUF2214, membrane APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 Pfam PF14518 Iron-containing redox enzyme 519 630 4.6E-10 T 11-10-2018 APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 Gene3D G3DSA:3.40.47.10 229 376 8.7E-28 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 SUPERFAMILY SSF53901 6 201 5.54E-28 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 SUPERFAMILY SSF48613 423 637 1.02E-27 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 SUPERFAMILY SSF53901 253 370 2.11E-16 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 Gene3D G3DSA:1.20.910.10 421 642 1.6E-43 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 285 357 5.8E-9 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 128 198 2.2E-4 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APT56_27460 49b12bc3dca77e70103ef7f04cdd41cd 643 Gene3D G3DSA:3.40.47.10 8 200 6.2E-35 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_00040 cedf9fc447e24a1f8f74bfa1dcb8066e 126 Hamap MF_00422 Protein translocase subunit SecE [secE]. 65 121 11.537 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_00040 cedf9fc447e24a1f8f74bfa1dcb8066e 126 Gene3D G3DSA:1.20.5.1030 65 122 2.9E-15 T 11-10-2018 IPR038379 SecE superfamily APT56_00040 cedf9fc447e24a1f8f74bfa1dcb8066e 126 PRINTS PR01650 Bacterial translocase SecE signature 43 64 4.9E-8 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APT56_00040 cedf9fc447e24a1f8f74bfa1dcb8066e 126 PRINTS PR01650 Bacterial translocase SecE signature 64 84 4.9E-8 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APT56_00040 cedf9fc447e24a1f8f74bfa1dcb8066e 126 PRINTS PR01650 Bacterial translocase SecE signature 88 108 4.9E-8 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APT56_00040 cedf9fc447e24a1f8f74bfa1dcb8066e 126 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 69 119 2.7E-19 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APT56_00040 cedf9fc447e24a1f8f74bfa1dcb8066e 126 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 118 1.6E-17 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APT56_05795 9748d894daff70e9c0e97cb43529f742 262 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 143 163 - T 11-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site APT56_05795 9748d894daff70e9c0e97cb43529f742 262 Gene3D G3DSA:3.60.110.10 1 258 7.7E-70 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_05795 9748d894daff70e9c0e97cb43529f742 262 Pfam PF00795 Carbon-nitrogen hydrolase 3 245 2.1E-39 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_05795 9748d894daff70e9c0e97cb43529f742 262 SUPERFAMILY SSF56317 1 258 1.31E-65 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_11730 c68d5f13811b4647b1370732f941cb41 314 Gene3D G3DSA:1.10.3720.10 85 305 2.7E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11730 c68d5f13811b4647b1370732f941cb41 314 SUPERFAMILY SSF161098 92 297 5.76E-20 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11730 c68d5f13811b4647b1370732f941cb41 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 312 6.0E-40 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_20400 0f2981b1e45170c993768826fdaf8a8b 303 Gene3D G3DSA:1.10.10.10 2 89 2.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20400 0f2981b1e45170c993768826fdaf8a8b 303 Gene3D G3DSA:3.40.190.290 91 293 1.4E-60 T 11-10-2018 APT56_20400 0f2981b1e45170c993768826fdaf8a8b 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.7E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_20400 0f2981b1e45170c993768826fdaf8a8b 303 SUPERFAMILY SSF46785 2 112 9.92E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20400 0f2981b1e45170c993768826fdaf8a8b 303 Pfam PF03466 LysR substrate binding domain 89 294 3.9E-44 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_20400 0f2981b1e45170c993768826fdaf8a8b 303 SUPERFAMILY SSF53850 90 297 6.52E-47 T 11-10-2018 APT56_08020 3ea494f89675bc75838acddc4f7696e5 273 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 207 7.2E-11 T 11-10-2018 APT56_08020 3ea494f89675bc75838acddc4f7696e5 273 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 9 261 7.9E-109 T 11-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 APT56_08020 3ea494f89675bc75838acddc4f7696e5 273 Gene3D G3DSA:1.10.150.240 28 105 1.0E-95 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APT56_08020 3ea494f89675bc75838acddc4f7696e5 273 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 96 207 4.0E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_08020 3ea494f89675bc75838acddc4f7696e5 273 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 273 127.064 T 11-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 APT56_08020 3ea494f89675bc75838acddc4f7696e5 273 SUPERFAMILY SSF56784 10 262 1.49E-59 T 11-10-2018 IPR036412 HAD-like superfamily APT56_08020 3ea494f89675bc75838acddc4f7696e5 273 Gene3D G3DSA:3.40.50.1000 12 273 1.0E-95 T 11-10-2018 IPR023214 HAD superfamily APT56_25325 a46147ae733b35a9007a71e3804afbdd 318 PIRSF PIRSF018266 1 317 2.0E-60 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_25325 a46147ae733b35a9007a71e3804afbdd 318 Gene3D G3DSA:2.60.120.1440 99 233 5.1E-14 T 11-10-2018 APT56_25325 a46147ae733b35a9007a71e3804afbdd 318 Pfam PF04773 FecR protein 106 189 2.5E-14 T 11-10-2018 IPR006860 FecR protein APT56_17505 ab6d41f1e50e286175ab4c359fa88878 309 Gene3D G3DSA:1.10.3470.10 1 309 5.1E-52 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_17505 ab6d41f1e50e286175ab4c359fa88878 309 Pfam PF01032 FecCD transport family 20 305 3.0E-51 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APT56_17505 ab6d41f1e50e286175ab4c359fa88878 309 SUPERFAMILY SSF81345 4 306 3.01E-53 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_10915 25b2af0af9c38b155322ca9e523c3af6 222 Pfam PF03737 Aldolase/RraA 29 174 1.3E-45 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein APT56_10915 25b2af0af9c38b155322ca9e523c3af6 222 SUPERFAMILY SSF89562 26 186 1.44E-45 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily APT56_10915 25b2af0af9c38b155322ca9e523c3af6 222 Gene3D G3DSA:3.50.30.100 7 198 8.4E-56 T 11-10-2018 APT56_26610 eb0c557c06a974c6566e2f831939cc9d 41 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 30 5.3E-20 T 11-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 APT56_26610 eb0c557c06a974c6566e2f831939cc9d 41 Pfam PF08173 Membrane bound YbgT-like protein 1 27 5.0E-16 T 11-10-2018 IPR012994 Membrane bound YbgT-like APT56_21335 453f3990f26a62a507c33ddd7116a853 393 Pfam PF02803 Thiolase, C-terminal domain 271 392 1.8E-45 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 PIRSF PIRSF000429 1 393 4.3E-126 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 Gene3D G3DSA:3.40.47.10 127 389 2.5E-150 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 Pfam PF00108 Thiolase, N-terminal domain 4 262 1.2E-90 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 SUPERFAMILY SSF53901 271 392 3.6E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 Gene3D G3DSA:3.40.47.10 7 276 2.5E-150 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 SUPERFAMILY SSF53901 4 269 1.13E-80 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APT56_21335 453f3990f26a62a507c33ddd7116a853 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 2.5E-138 T 11-10-2018 IPR002155 Thiolase GO:0016747 APT56_23105 cf03d1350f279f4ae3b5b873bd8d212c 132 Pfam PF11162 Protein of unknown function (DUF2946) 12 130 1.7E-13 T 11-10-2018 IPR021333 Protein of unknown function DUF2946 APT56_13340 991b39497261bc6e9ab556f9c85ba4f3 217 Gene3D G3DSA:1.10.3720.10 2 215 2.7E-55 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13340 991b39497261bc6e9ab556f9c85ba4f3 217 SUPERFAMILY SSF161098 11 206 4.06E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13340 991b39497261bc6e9ab556f9c85ba4f3 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 212 9.2E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13340 991b39497261bc6e9ab556f9c85ba4f3 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 9 108 5.4E-28 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_06980 d11ca6ef503cb1f58c2e38acf2b4c2c7 280 Gene3D G3DSA:3.40.50.720 2 280 1.9E-86 T 11-10-2018 APT56_06980 d11ca6ef503cb1f58c2e38acf2b4c2c7 280 SUPERFAMILY SSF51735 9 255 1.38E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_06980 d11ca6ef503cb1f58c2e38acf2b4c2c7 280 Pfam PF13460 NAD(P)H-binding 11 199 5.6E-14 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_27320 df016df406e29b12e6a9dc4c3437f4cb 268 Gene3D G3DSA:3.30.420.490 124 229 1.6E-54 T 11-10-2018 APT56_27320 df016df406e29b12e6a9dc4c3437f4cb 268 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 264 15.568 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 APT56_27320 df016df406e29b12e6a9dc4c3437f4cb 268 SUPERFAMILY SSF53067 1 116 1.29E-19 T 11-10-2018 APT56_27320 df016df406e29b12e6a9dc4c3437f4cb 268 Pfam PF03309 Type III pantothenate kinase 2 201 9.0E-49 T 11-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 APT56_27320 df016df406e29b12e6a9dc4c3437f4cb 268 SUPERFAMILY SSF53067 123 230 7.56E-23 T 11-10-2018 APT56_27320 df016df406e29b12e6a9dc4c3437f4cb 268 Gene3D G3DSA:3.30.420.40 3 123 1.6E-54 T 11-10-2018 APT56_04440 6c14491264e8c3edfb63194008f08d6a 136 Pfam PF03061 Thioesterase superfamily 32 107 7.9E-17 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_04440 6c14491264e8c3edfb63194008f08d6a 136 Gene3D G3DSA:3.10.129.10 6 136 2.9E-37 T 11-10-2018 APT56_04440 6c14491264e8c3edfb63194008f08d6a 136 SUPERFAMILY SSF54637 18 134 6.1E-34 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_07655 8a1ded5527609c304875975db0939391 567 Gene3D G3DSA:3.30.70.1450 224 282 5.3E-6 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_07655 8a1ded5527609c304875975db0939391 567 SUPERFAMILY SSF116726 228 282 2.62E-6 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_07655 8a1ded5527609c304875975db0939391 567 Pfam PF06826 Predicted Permease Membrane Region 390 559 5.0E-32 T 11-10-2018 IPR006512 YidE/YbjL duplication APT56_07655 8a1ded5527609c304875975db0939391 567 Pfam PF06826 Predicted Permease Membrane Region 15 177 5.8E-28 T 11-10-2018 IPR006512 YidE/YbjL duplication APT56_07655 8a1ded5527609c304875975db0939391 567 TIGRFAM TIGR03802 Asp_Ala_antiprt: aspartate-alanine antiporter 6 561 2.2E-185 T 11-10-2018 IPR022457 Aspartate-alanine antiporter GO:0005215|GO:0016020 APT56_07655 8a1ded5527609c304875975db0939391 567 SUPERFAMILY SSF116726 307 374 5.49E-6 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_07655 8a1ded5527609c304875975db0939391 567 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 397 546 2.1E-27 T 11-10-2018 IPR006512 YidE/YbjL duplication APT56_25910 c8339460d113182120a078f090a7eee2 182 Pfam PF13420 Acetyltransferase (GNAT) domain 11 165 1.2E-21 T 11-10-2018 APT56_25910 c8339460d113182120a078f090a7eee2 182 Gene3D G3DSA:3.40.630.30 5 181 7.4E-51 T 11-10-2018 APT56_25910 c8339460d113182120a078f090a7eee2 182 SUPERFAMILY SSF55729 11 174 1.27E-30 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_14010 101ab8dc0c26eb2701c4a5bdf141494f 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 66 1.2E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_14010 101ab8dc0c26eb2701c4a5bdf141494f 244 SMART SM00895 76 216 1.7E-20 T 11-10-2018 IPR011711 GntR, C-terminal APT56_14010 101ab8dc0c26eb2701c4a5bdf141494f 244 Gene3D G3DSA:1.20.120.530 69 222 5.9E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_14010 101ab8dc0c26eb2701c4a5bdf141494f 244 Gene3D G3DSA:1.10.10.10 5 67 3.7E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14010 101ab8dc0c26eb2701c4a5bdf141494f 244 SMART SM00345 8 66 5.4E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_14010 101ab8dc0c26eb2701c4a5bdf141494f 244 SUPERFAMILY SSF48008 72 220 2.54E-20 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_14010 101ab8dc0c26eb2701c4a5bdf141494f 244 SUPERFAMILY SSF46785 6 95 1.97E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14010 101ab8dc0c26eb2701c4a5bdf141494f 244 Pfam PF07729 FCD domain 77 213 1.5E-19 T 11-10-2018 IPR011711 GntR, C-terminal APT56_19355 a70257d3ba425d27d5e5c59401d998f1 445 SUPERFAMILY SSF142764 12 442 2.09E-77 T 11-10-2018 APT56_19355 a70257d3ba425d27d5e5c59401d998f1 445 Gene3D G3DSA:3.40.980.20 269 445 4.5E-34 T 11-10-2018 APT56_19355 a70257d3ba425d27d5e5c59401d998f1 445 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 280 438 1.4E-27 T 11-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain APT56_19355 a70257d3ba425d27d5e5c59401d998f1 445 Pfam PF07005 Putative sugar-binding N-terminal domain 12 257 1.6E-42 T 11-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain APT56_19355 a70257d3ba425d27d5e5c59401d998f1 445 Gene3D G3DSA:3.40.50.10840 8 264 7.0E-60 T 11-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily APT56_17120 155f77c005238f89ea372cc1343e8474 241 SUPERFAMILY SSF51735 1 227 1.12E-20 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_17120 155f77c005238f89ea372cc1343e8474 241 Gene3D G3DSA:3.40.50.720 1 227 2.8E-25 T 11-10-2018 APT56_17120 155f77c005238f89ea372cc1343e8474 241 Pfam PF13460 NAD(P)H-binding 7 218 1.0E-24 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_19315 0c396d2817df57b151318d903cbaa812 201 Gene3D G3DSA:3.40.50.150 24 192 2.1E-41 T 11-10-2018 APT56_19315 0c396d2817df57b151318d903cbaa812 201 Pfam PF13649 Methyltransferase domain 47 143 8.2E-17 T 11-10-2018 APT56_19315 0c396d2817df57b151318d903cbaa812 201 SUPERFAMILY SSF53335 6 153 2.76E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_03285 6e965969bb0cd962a66ccb512ebc01a1 176 ProSitePatterns PS00194 Thioredoxin family active site. 67 85 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APT56_03285 6e965969bb0cd962a66ccb512ebc01a1 176 SUPERFAMILY SSF52833 1 171 3.31E-33 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_03285 6e965969bb0cd962a66ccb512ebc01a1 176 Gene3D G3DSA:3.40.30.10 45 175 3.5E-34 T 11-10-2018 APT56_03285 6e965969bb0cd962a66ccb512ebc01a1 176 Pfam PF08534 Redoxin 36 163 4.4E-17 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APT56_00930 4d28a17c12d309c9f0cfa24f8a2e36f3 431 SUPERFAMILY SSF53850 30 424 1.38E-78 T 11-10-2018 APT56_00930 4d28a17c12d309c9f0cfa24f8a2e36f3 431 Pfam PF13416 Bacterial extracellular solute-binding protein 50 366 3.1E-50 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_00930 4d28a17c12d309c9f0cfa24f8a2e36f3 431 Gene3D G3DSA:3.40.190.10 38 385 3.6E-111 T 11-10-2018 APT56_00930 4d28a17c12d309c9f0cfa24f8a2e36f3 431 Gene3D G3DSA:3.40.190.10 149 421 3.6E-111 T 11-10-2018 APT56_11070 e64cb769bbd05488809aeaae4b0b812a 344 Pfam PF03916 Polysulphide reductase, NrfD 12 216 7.7E-16 T 11-10-2018 IPR005614 NrfD family APT56_18550 d71092e33edb932eaaec1585fb98424f 715 Gene3D G3DSA:2.40.170.20 177 715 5.4E-177 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_18550 d71092e33edb932eaaec1585fb98424f 715 SUPERFAMILY SSF56935 37 714 4.35E-123 T 11-10-2018 APT56_18550 d71092e33edb932eaaec1585fb98424f 715 Gene3D G3DSA:2.170.130.10 49 175 3.4E-33 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_18550 d71092e33edb932eaaec1585fb98424f 715 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 71 713 5.4E-124 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_18550 d71092e33edb932eaaec1585fb98424f 715 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 166 2.1E-11 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_18550 d71092e33edb932eaaec1585fb98424f 715 Pfam PF00593 TonB dependent receptor 285 713 1.3E-55 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_07645 29ee0155d96e3f2966902055b59e1228 563 Pfam PF02080 TrkA-C domain 226 278 1.5E-8 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT56_07645 29ee0155d96e3f2966902055b59e1228 563 Pfam PF02080 TrkA-C domain 304 377 4.5E-7 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APT56_07645 29ee0155d96e3f2966902055b59e1228 563 SUPERFAMILY SSF116726 223 279 6.8E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_07645 29ee0155d96e3f2966902055b59e1228 563 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 396 546 4.0E-25 T 11-10-2018 IPR006512 YidE/YbjL duplication APT56_07645 29ee0155d96e3f2966902055b59e1228 563 Gene3D G3DSA:3.30.70.1450 222 287 2.3E-7 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_07645 29ee0155d96e3f2966902055b59e1228 563 Pfam PF06826 Predicted Permease Membrane Region 392 560 9.6E-41 T 11-10-2018 IPR006512 YidE/YbjL duplication APT56_07645 29ee0155d96e3f2966902055b59e1228 563 Pfam PF06826 Predicted Permease Membrane Region 15 175 3.1E-37 T 11-10-2018 IPR006512 YidE/YbjL duplication APT56_07645 29ee0155d96e3f2966902055b59e1228 563 TIGRFAM TIGR03802 Asp_Ala_antiprt: aspartate-alanine antiporter 2 562 2.4E-198 T 11-10-2018 IPR022457 Aspartate-alanine antiporter GO:0005215|GO:0016020 APT56_07645 29ee0155d96e3f2966902055b59e1228 563 Gene3D G3DSA:3.30.70.1450 296 378 1.6E-6 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_07645 29ee0155d96e3f2966902055b59e1228 563 SUPERFAMILY SSF116726 291 378 1.7E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APT56_26375 3aefa94d9369fd91dd55faa42948e62d 251 Pfam PF00899 ThiF family 9 243 3.4E-66 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APT56_26375 3aefa94d9369fd91dd55faa42948e62d 251 Gene3D G3DSA:3.40.50.720 1 250 8.4E-96 T 11-10-2018 APT56_26375 3aefa94d9369fd91dd55faa42948e62d 251 SUPERFAMILY SSF69572 2 247 5.1E-88 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 APT56_13160 7566e422fe7803c87addc4d64d4ad8b1 414 Gene3D G3DSA:3.40.640.10 69 291 3.8E-120 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_13160 7566e422fe7803c87addc4d64d4ad8b1 414 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 241 254 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APT56_13160 7566e422fe7803c87addc4d64d4ad8b1 414 Pfam PF00155 Aminotransferase class I and II 39 398 1.6E-65 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_13160 7566e422fe7803c87addc4d64d4ad8b1 414 SUPERFAMILY SSF53383 10 402 2.5E-101 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_13160 7566e422fe7803c87addc4d64d4ad8b1 414 Gene3D G3DSA:3.90.1150.10 30 397 3.8E-120 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_05520 483bb20093272b9301e1aa81eec0ac5b 148 SUPERFAMILY SSF55729 4 137 9.43E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_05520 483bb20093272b9301e1aa81eec0ac5b 148 Pfam PF00583 Acetyltransferase (GNAT) family 29 131 9.5E-10 T 11-10-2018 IPR000182 GNAT domain APT56_05520 483bb20093272b9301e1aa81eec0ac5b 148 Gene3D G3DSA:3.40.630.30 6 131 4.1E-18 T 11-10-2018 APT56_09945 a2e4c401e5ffd3dcee92e89d61f57328 489 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 52 212 4.0E-20 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like APT56_24965 2a62b1685dbf4daa651e50131fb0b1e6 110 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 45 1.0E-16 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_24965 2a62b1685dbf4daa651e50131fb0b1e6 110 Pfam PF09723 Zinc ribbon domain 1 38 1.6E-13 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_24965 2a62b1685dbf4daa651e50131fb0b1e6 110 SMART SM00834 1 41 1.8E-16 T 11-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain APT56_18200 a1adb48d5387ee2723f4975a4970a3ef 104 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 3 99 29.241 T 11-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS APT56_18200 a1adb48d5387ee2723f4975a4970a3ef 104 SUPERFAMILY SSF54736 19 103 1.88E-32 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT56_18200 a1adb48d5387ee2723f4975a4970a3ef 104 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 22 99 8.3E-36 T 11-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 APT56_18200 a1adb48d5387ee2723f4975a4970a3ef 104 Gene3D G3DSA:3.30.1390.10 2 104 1.7E-43 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT56_20775 5bbdca5fbacd3751c109a152cf2476a2 423 SUPERFAMILY SSF103473 9 410 8.89E-52 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_20775 5bbdca5fbacd3751c109a152cf2476a2 423 Pfam PF07690 Major Facilitator Superfamily 23 317 8.1E-28 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_20775 5bbdca5fbacd3751c109a152cf2476a2 423 Gene3D G3DSA:1.20.1250.20 4 411 3.8E-43 T 11-10-2018 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 Gene3D G3DSA:1.10.10.60 1 61 1.0E-28 T 11-10-2018 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 SUPERFAMILY SSF48498 67 195 9.67E-36 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_11195 83eff6af61695202dd639342bac9d5eb 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 5.4E-16 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 21 52 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_11195 83eff6af61695202dd639342bac9d5eb 199 Gene3D G3DSA:1.10.357.10 62 198 3.7E-36 T 11-10-2018 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 SUPERFAMILY SSF46689 4 66 6.48E-16 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 68 195 5.8E-33 T 11-10-2018 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 1.3E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 1.3E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 PRINTS PR00400 Tetracycline repressor protein signature 129 148 1.7E-47 T 11-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 PRINTS PR00400 Tetracycline repressor protein signature 21 44 1.7E-47 T 11-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 PRINTS PR00400 Tetracycline repressor protein signature 74 93 1.7E-47 T 11-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 PRINTS PR00400 Tetracycline repressor protein signature 180 194 1.7E-47 T 11-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 APT56_11195 83eff6af61695202dd639342bac9d5eb 199 PRINTS PR00400 Tetracycline repressor protein signature 94 117 1.7E-47 T 11-10-2018 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 APT56_20280 757e82508d1c7044fb8509c7cdf351ab 527 Pfam PF00571 CBS domain 367 416 5.3E-4 T 11-10-2018 IPR000644 CBS domain APT56_20280 757e82508d1c7044fb8509c7cdf351ab 527 Gene3D G3DSA:3.30.465.10 435 513 7.8E-18 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APT56_20280 757e82508d1c7044fb8509c7cdf351ab 527 Pfam PF03741 Integral membrane protein TerC family 14 204 1.8E-48 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 APT56_20280 757e82508d1c7044fb8509c7cdf351ab 527 SMART SM01091 429 514 2.4E-22 T 11-10-2018 IPR005170 Transporter-associated domain APT56_20280 757e82508d1c7044fb8509c7cdf351ab 527 SUPERFAMILY SSF56176 426 516 8.45E-21 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APT56_20280 757e82508d1c7044fb8509c7cdf351ab 527 SUPERFAMILY SSF54631 285 419 9.22E-22 T 11-10-2018 APT56_20280 757e82508d1c7044fb8509c7cdf351ab 527 Gene3D G3DSA:3.10.580.10 279 432 2.4E-49 T 11-10-2018 APT56_20280 757e82508d1c7044fb8509c7cdf351ab 527 Pfam PF03471 Transporter associated domain 432 513 1.7E-22 T 11-10-2018 IPR005170 Transporter-associated domain APT56_02465 9db2798ad9cc3243410064ff60f306df 83 Gene3D G3DSA:1.10.10.10 12 79 2.0E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02465 9db2798ad9cc3243410064ff60f306df 83 SUPERFAMILY SSF46894 7 78 1.19E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_02465 9db2798ad9cc3243410064ff60f306df 83 Pfam PF00196 Bacterial regulatory proteins, luxR family 17 71 1.8E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02465 9db2798ad9cc3243410064ff60f306df 83 SMART SM00421 15 72 1.2E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02465 9db2798ad9cc3243410064ff60f306df 83 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 48 60 3.2E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02465 9db2798ad9cc3243410064ff60f306df 83 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 32 48 3.2E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02465 9db2798ad9cc3243410064ff60f306df 83 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 18 32 3.2E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_18145 ff96ac3b8a0bdc5bf3e19ba4a630fdf6 266 SUPERFAMILY SSF52540 4 251 4.05E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18145 ff96ac3b8a0bdc5bf3e19ba4a630fdf6 266 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 1.1E-10 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_18145 ff96ac3b8a0bdc5bf3e19ba4a630fdf6 266 SMART SM00382 29 237 2.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18145 ff96ac3b8a0bdc5bf3e19ba4a630fdf6 266 Gene3D G3DSA:3.40.50.300 2 253 8.4E-64 T 11-10-2018 APT56_18145 ff96ac3b8a0bdc5bf3e19ba4a630fdf6 266 Pfam PF00005 ABC transporter 20 180 4.2E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_02680 20f13c17fa50cee1d8837737db7065c2 269 SUPERFAMILY SSF110399 5 247 3.92E-89 T 11-10-2018 APT56_02680 20f13c17fa50cee1d8837737db7065c2 269 Hamap MF_00443 Thiazole synthase [thiG]. 6 262 41.934 T 11-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 APT56_02680 20f13c17fa50cee1d8837737db7065c2 269 Gene3D G3DSA:3.20.20.70 1 262 6.1E-116 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_02680 20f13c17fa50cee1d8837737db7065c2 269 Pfam PF05690 Thiazole biosynthesis protein ThiG 9 255 6.8E-106 T 11-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 APT56_08805 05cd4c0dfcc96b98f9b911e144da31b4 642 Pfam PF02705 K+ potassium transporter 30 562 1.9E-201 T 11-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 APT56_08805 05cd4c0dfcc96b98f9b911e144da31b4 642 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 21 642 33.084 T 11-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 54 65 3.3E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 195 207 3.3E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 157 168 3.3E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 98 108 3.3E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 327 344 3.3E-6 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 Gene3D G3DSA:2.40.160.10 11 370 5.1E-83 T 11-10-2018 IPR023614 Porin domain superfamily APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 SUPERFAMILY SSF56935 22 370 2.2E-72 T 11-10-2018 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 PRINTS PR00184 Neisseria sp. porin signature 324 348 7.9E-10 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 PRINTS PR00184 Neisseria sp. porin signature 156 173 7.9E-10 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 PRINTS PR00184 Neisseria sp. porin signature 56 81 7.9E-10 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_26580 b11b80c9e1dd9bd3345516074e5dd040 370 Pfam PF13609 Gram-negative porin 7 350 2.6E-58 T 11-10-2018 APT56_00840 278ea0b8ef3a68a5599da545f2efb5fe 392 SUPERFAMILY SSF55031 181 286 1.44E-27 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APT56_00840 278ea0b8ef3a68a5599da545f2efb5fe 392 PIRSF PIRSF005962 2 392 1.6E-124 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_00840 278ea0b8ef3a68a5599da545f2efb5fe 392 Gene3D G3DSA:3.30.70.360 177 292 5.4E-131 T 11-10-2018 APT56_00840 278ea0b8ef3a68a5599da545f2efb5fe 392 Pfam PF07687 Peptidase dimerisation domain 181 279 8.9E-10 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APT56_00840 278ea0b8ef3a68a5599da545f2efb5fe 392 SUPERFAMILY SSF53187 6 390 1.37E-86 T 11-10-2018 APT56_00840 278ea0b8ef3a68a5599da545f2efb5fe 392 Pfam PF01546 Peptidase family M20/M25/M40 68 351 4.9E-35 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APT56_00840 278ea0b8ef3a68a5599da545f2efb5fe 392 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 10 372 6.2E-102 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APT56_00840 278ea0b8ef3a68a5599da545f2efb5fe 392 Gene3D G3DSA:3.40.630.10 10 373 5.4E-131 T 11-10-2018 APT56_11665 d18e42bf9aad7dfd096a2c1ddf4d688d 314 SUPERFAMILY SSF54523 39 301 2.3E-5 T 11-10-2018 APT56_11665 d18e42bf9aad7dfd096a2c1ddf4d688d 314 Gene3D G3DSA:1.10.40.60 213 274 1.9E-20 T 11-10-2018 IPR038072 GspK, central domain superfamily APT56_11665 d18e42bf9aad7dfd096a2c1ddf4d688d 314 Gene3D G3DSA:3.30.1300.30 48 298 1.9E-20 T 11-10-2018 APT56_11665 d18e42bf9aad7dfd096a2c1ddf4d688d 314 Pfam PF03934 Type II secretion system (T2SS), protein K 33 300 4.0E-57 T 11-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 APT56_11665 d18e42bf9aad7dfd096a2c1ddf4d688d 314 Gene3D G3DSA:1.10.40.60 108 212 1.9E-20 T 11-10-2018 IPR038072 GspK, central domain superfamily APT56_11665 d18e42bf9aad7dfd096a2c1ddf4d688d 314 PIRSF PIRSF002786 5 313 3.2E-64 T 11-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 APT56_23425 1456210de1ae155f49ce23938c6ed226 267 Gene3D G3DSA:3.40.50.720 2 261 4.9E-70 T 11-10-2018 APT56_23425 1456210de1ae155f49ce23938c6ed226 267 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_23425 1456210de1ae155f49ce23938c6ed226 267 Pfam PF00106 short chain dehydrogenase 6 190 1.1E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 SUPERFAMILY SSF51735 4 221 6.9E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_23425 1456210de1ae155f49ce23938c6ed226 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.2E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 8.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 8.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 8.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_23425 1456210de1ae155f49ce23938c6ed226 267 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 188 6.6E-4 T 11-10-2018 APT56_16795 d74c3d2a6ed35805421c0da53252c9a2 507 SUPERFAMILY SSF75304 7 463 9.81E-127 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_16795 d74c3d2a6ed35805421c0da53252c9a2 507 Gene3D G3DSA:3.90.1300.10 3 472 8.1E-134 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_16795 d74c3d2a6ed35805421c0da53252c9a2 507 Pfam PF01425 Amidase 28 452 1.6E-94 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_02325 f350a8bf281822cbede797e1b94b8062 207 SUPERFAMILY SSF48498 97 206 1.42E-20 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_02325 f350a8bf281822cbede797e1b94b8062 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 73 2.3E-16 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_02325 f350a8bf281822cbede797e1b94b8062 207 Gene3D G3DSA:1.10.357.10 71 206 4.8E-33 T 11-10-2018 APT56_02325 f350a8bf281822cbede797e1b94b8062 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 39 69 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_02325 f350a8bf281822cbede797e1b94b8062 207 Gene3D G3DSA:1.10.10.60 14 70 1.5E-18 T 11-10-2018 APT56_02325 f350a8bf281822cbede797e1b94b8062 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 7.5E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_02325 f350a8bf281822cbede797e1b94b8062 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 7.5E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_02325 f350a8bf281822cbede797e1b94b8062 207 SUPERFAMILY SSF46689 21 92 1.6E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_11415 653c777625424a8f25c2352b86d43c82 453 Pfam PF07007 Lysozyme inhibitor LprI 26 92 1.7E-5 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal APT56_27620 cf3c143fea81e801b4883d9d34a259ea 692 Pfam PF05140 ResB-like family 26 680 2.4E-155 T 11-10-2018 IPR007816 ResB-like domain APT56_20065 b9d2a58dd438ef8fda3d36f4faf6a64b 617 SUPERFAMILY SSF90123 36 350 3.92E-47 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_20065 b9d2a58dd438ef8fda3d36f4faf6a64b 617 ProSitePatterns PS00211 ABC transporters family signature. 511 525 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_20065 b9d2a58dd438ef8fda3d36f4faf6a64b 617 Gene3D G3DSA:3.40.50.300 359 612 3.3E-89 T 11-10-2018 APT56_20065 b9d2a58dd438ef8fda3d36f4faf6a64b 617 Gene3D G3DSA:1.20.1560.10 31 357 7.4E-25 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_20065 b9d2a58dd438ef8fda3d36f4faf6a64b 617 Pfam PF00664 ABC transporter transmembrane region 50 309 5.0E-10 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_20065 b9d2a58dd438ef8fda3d36f4faf6a64b 617 SUPERFAMILY SSF52540 358 609 9.52E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_20065 b9d2a58dd438ef8fda3d36f4faf6a64b 617 Pfam PF00005 ABC transporter 388 539 3.2E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_20065 b9d2a58dd438ef8fda3d36f4faf6a64b 617 SMART SM00382 394 585 5.5E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_23650 26014f303357f4b1b5528a1533e6d0d3 347 Gene3D G3DSA:1.10.287.90 24 109 1.3E-30 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23650 26014f303357f4b1b5528a1533e6d0d3 347 SUPERFAMILY SSF49503 129 286 5.24E-50 T 11-10-2018 IPR008972 Cupredoxin APT56_23650 26014f303357f4b1b5528a1533e6d0d3 347 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 11 243 8.0E-108 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 APT56_23650 26014f303357f4b1b5528a1533e6d0d3 347 Gene3D G3DSA:2.60.40.420 110 286 3.8E-52 T 11-10-2018 IPR008972 Cupredoxin APT56_23650 26014f303357f4b1b5528a1533e6d0d3 347 Pfam PF06481 COX Aromatic Rich Motif 244 289 1.3E-20 T 11-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 APT56_23650 26014f303357f4b1b5528a1533e6d0d3 347 SUPERFAMILY SSF81464 26 114 4.91E-23 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23650 26014f303357f4b1b5528a1533e6d0d3 347 PIRSF PIRSF000292 3 313 3.2E-125 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 APT56_23650 26014f303357f4b1b5528a1533e6d0d3 347 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 157 224 2.5E-6 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_24275 ed14bd6204448415a3fc604ffcc0b31f 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 106 122 7.7E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24275 ed14bd6204448415a3fc604ffcc0b31f 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 102 7.7E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24275 ed14bd6204448415a3fc604ffcc0b31f 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 86 7.7E-7 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24275 ed14bd6204448415a3fc604ffcc0b31f 165 Gene3D G3DSA:1.10.10.10 6 158 3.1E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24275 ed14bd6204448415a3fc604ffcc0b31f 165 SMART SM00347 46 146 1.8E-14 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_24275 ed14bd6204448415a3fc604ffcc0b31f 165 SUPERFAMILY SSF46785 23 157 1.16E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_24275 ed14bd6204448415a3fc604ffcc0b31f 165 Pfam PF12802 MarR family 52 110 2.4E-10 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_22615 14b036d6dbd251f334fd80e84c8055f5 243 Gene3D G3DSA:3.40.1280.10 73 243 7.2E-57 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APT56_22615 14b036d6dbd251f334fd80e84c8055f5 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 17 241 1.2E-48 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 APT56_22615 14b036d6dbd251f334fd80e84c8055f5 243 PIRSF PIRSF015601 2 243 5.4E-53 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 APT56_22615 14b036d6dbd251f334fd80e84c8055f5 243 Pfam PF04452 RNA methyltransferase 20 237 6.3E-65 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 APT56_22615 14b036d6dbd251f334fd80e84c8055f5 243 SUPERFAMILY SSF88697 3 55 5.63E-13 T 11-10-2018 IPR015947 PUA-like superfamily APT56_22615 14b036d6dbd251f334fd80e84c8055f5 243 Gene3D G3DSA:2.40.240.20 1 67 2.0E-19 T 11-10-2018 APT56_22615 14b036d6dbd251f334fd80e84c8055f5 243 SUPERFAMILY SSF75217 74 242 8.9E-49 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APT56_14635 2356adad49b6ef1f894498c388fc1635 293 Pfam PF06629 MltA-interacting protein MipA 64 292 1.8E-37 T 11-10-2018 IPR010583 MltA-interacting MipA APT56_20295 253ae58a034181d17a5ca8d31ab82e8e 329 PIRSF PIRSF017082 2 328 3.1E-93 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20295 253ae58a034181d17a5ca8d31ab82e8e 329 SUPERFAMILY SSF53850 113 293 2.06E-16 T 11-10-2018 APT56_20295 253ae58a034181d17a5ca8d31ab82e8e 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 324 8.1E-101 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_20295 253ae58a034181d17a5ca8d31ab82e8e 329 Gene3D G3DSA:3.40.190.10 131 254 6.8E-123 T 11-10-2018 APT56_20295 253ae58a034181d17a5ca8d31ab82e8e 329 Gene3D G3DSA:3.40.190.150 34 319 6.8E-123 T 11-10-2018 APT56_15625 2616aa7ac643c050273ea6bebd64abb7 489 SUPERFAMILY SSF56672 4 226 2.89E-29 T 11-10-2018 APT56_15625 2616aa7ac643c050273ea6bebd64abb7 489 Gene3D G3DSA:3.30.70.270 69 169 4.4E-11 T 11-10-2018 APT56_15625 2616aa7ac643c050273ea6bebd64abb7 489 Pfam PF00817 impB/mucB/samB family 24 146 5.6E-7 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APT56_15625 2616aa7ac643c050273ea6bebd64abb7 489 Gene3D G3DSA:2.30.40.20 29 68 4.4E-11 T 11-10-2018 APT56_15625 2616aa7ac643c050273ea6bebd64abb7 489 Gene3D G3DSA:1.10.150.20 170 217 4.4E-11 T 11-10-2018 APT56_01005 cdba5f9b6cacf3379f43e888fbaab273 209 PIRSF PIRSF006324 1 207 4.8E-51 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_01005 cdba5f9b6cacf3379f43e888fbaab273 209 Pfam PF01810 LysE type translocator 16 203 1.1E-30 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_10255 270931a5639d77e18cf3be93d44f9360 450 Gene3D G3DSA:2.60.40.3940 348 426 1.1E-6 T 11-10-2018 APT56_15265 388656d6a16cc76e1a6cba598fcfa763 112 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 15 104 1.1E-21 T 11-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 APT56_15265 388656d6a16cc76e1a6cba598fcfa763 112 Pfam PF03334 Na+/H+ antiporter subunit 16 96 3.1E-20 T 11-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 APT56_22305 244924d5651c1ffa01057c469f30a6e4 190 Pfam PF02600 Disulfide bond formation protein DsbB 12 97 1.1E-12 T 11-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 APT56_22305 244924d5651c1ffa01057c469f30a6e4 190 SUPERFAMILY SSF158442 16 128 8.76E-23 T 11-10-2018 IPR023380 DsbB-like superfamily APT56_22305 244924d5651c1ffa01057c469f30a6e4 190 Gene3D G3DSA:1.20.1550.10 3 102 1.8E-12 T 11-10-2018 IPR023380 DsbB-like superfamily APT56_23215 5ad14a90420627e00be25216e5abb9f9 436 Pfam PF00939 Sodium:sulfate symporter transmembrane region 15 434 6.9E-21 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 Gene3D G3DSA:1.10.10.60 254 294 4.0E-9 T 11-10-2018 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 Pfam PF02954 Bacterial regulatory protein, Fis family 259 294 3.1E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 SUPERFAMILY SSF46689 206 296 3.58E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 SUPERFAMILY SSF52540 1 227 2.13E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 Pfam PF00158 Sigma-54 interaction domain 1 160 3.9E-60 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 Gene3D G3DSA:1.10.8.60 165 229 1.9E-20 T 11-10-2018 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 18 31 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 206 215 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 Gene3D G3DSA:3.40.50.300 1 164 1.2E-57 T 11-10-2018 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 80 95 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 APT56_14365 e0c78615384a63e15fe9f27abe77bb11 306 SMART SM00382 14 157 4.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08855 69205275e52f200c38c8858f16214c64 260 Gene3D G3DSA:3.20.20.140 1 260 4.9E-74 T 11-10-2018 APT56_08855 69205275e52f200c38c8858f16214c64 260 SUPERFAMILY SSF51556 1 259 1.36E-69 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_08855 69205275e52f200c38c8858f16214c64 260 Pfam PF04909 Amidohydrolase 2 259 3.1E-39 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_26550 31227cbbe6a62687b4ddaee10dfc1b53 239 Pfam PF01168 Alanine racemase, N-terminal domain 11 233 1.2E-25 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_26550 31227cbbe6a62687b4ddaee10dfc1b53 239 Gene3D G3DSA:3.20.20.10 1 238 6.1E-88 T 11-10-2018 IPR029066 PLP-binding barrel APT56_26550 31227cbbe6a62687b4ddaee10dfc1b53 239 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 9 232 28.571 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APT56_26550 31227cbbe6a62687b4ddaee10dfc1b53 239 SUPERFAMILY SSF51419 3 231 3.01E-73 T 11-10-2018 IPR029066 PLP-binding barrel APT56_26550 31227cbbe6a62687b4ddaee10dfc1b53 239 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 7 233 7.7E-56 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APT56_26550 31227cbbe6a62687b4ddaee10dfc1b53 239 PIRSF PIRSF004848 1 239 5.1E-73 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APT56_06915 1d90b44978032d72ee72412ee6715a64 405 SUPERFAMILY SSF53822 29 403 1.98E-85 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_06915 1d90b44978032d72ee72412ee6715a64 405 Gene3D G3DSA:3.40.50.2300 33 342 7.4E-103 T 11-10-2018 APT56_06915 1d90b44978032d72ee72412ee6715a64 405 Pfam PF13458 Periplasmic binding protein 29 368 6.5E-90 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_06915 1d90b44978032d72ee72412ee6715a64 405 Gene3D G3DSA:3.40.50.2300 150 281 7.4E-103 T 11-10-2018 APT56_26385 903fa7c192a0e6a4f64b75ebfd237763 532 SUPERFAMILY SSF51261 405 530 6.28E-43 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_26385 903fa7c192a0e6a4f64b75ebfd237763 532 Gene3D G3DSA:2.70.70.10 405 531 8.6E-33 T 11-10-2018 IPR011055 Duplicated hybrid motif APT56_26385 903fa7c192a0e6a4f64b75ebfd237763 532 Pfam PF01551 Peptidase family M23 433 526 1.4E-25 T 11-10-2018 IPR016047 Peptidase M23 APT56_05890 c2be69a7d210b55d974426ea5b1cc2d1 257 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 60 82 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APT56_05890 c2be69a7d210b55d974426ea5b1cc2d1 257 Pfam PF01066 CDP-alcohol phosphatidyltransferase 19 82 1.0E-13 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APT56_05890 c2be69a7d210b55d974426ea5b1cc2d1 257 Gene3D G3DSA:1.20.120.1760 12 186 5.2E-15 T 11-10-2018 APT56_05890 c2be69a7d210b55d974426ea5b1cc2d1 257 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 26 165 2.1E-33 T 11-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 APT56_12560 f0c035c6c79b39ffe66903d4c412cc35 332 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 322 5.8E-101 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 APT56_12560 f0c035c6c79b39ffe66903d4c412cc35 332 SUPERFAMILY SSF53659 7 328 3.57E-109 T 11-10-2018 APT56_12560 f0c035c6c79b39ffe66903d4c412cc35 332 Gene3D G3DSA:3.40.718.10 3 329 3.1E-125 T 11-10-2018 APT56_12560 f0c035c6c79b39ffe66903d4c412cc35 332 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7 325 2.5E-111 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 APT56_16810 bdc7940f8cd94b43bd18dd01497cdc5f 341 ProSitePatterns PS00552 MerR-type HTH domain signature. 11 33 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_16810 bdc7940f8cd94b43bd18dd01497cdc5f 341 Pfam PF13411 MerR HTH family regulatory protein 10 74 2.3E-15 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_16810 bdc7940f8cd94b43bd18dd01497cdc5f 341 SUPERFAMILY SSF46955 9 110 2.34E-23 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_16810 bdc7940f8cd94b43bd18dd01497cdc5f 341 SMART SM00422 8 76 1.2E-18 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_16810 bdc7940f8cd94b43bd18dd01497cdc5f 341 Gene3D G3DSA:1.10.1660.10 1 121 9.9E-26 T 11-10-2018 APT56_16810 bdc7940f8cd94b43bd18dd01497cdc5f 341 SUPERFAMILY SSF52540 158 286 2.36E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07990 f536d7cc6e683c741c8d6fe87dad4392 284 Pfam PF00892 EamA-like transporter family 3 132 4.1E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_07990 f536d7cc6e683c741c8d6fe87dad4392 284 Pfam PF00892 EamA-like transporter family 142 273 1.4E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_07990 f536d7cc6e683c741c8d6fe87dad4392 284 SUPERFAMILY SSF103481 37 136 2.75E-12 T 11-10-2018 APT56_07990 f536d7cc6e683c741c8d6fe87dad4392 284 SUPERFAMILY SSF103481 198 279 6.8E-9 T 11-10-2018 APT56_09015 cc3e6be9c333f6f53a774191485f76da 554 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 184 282 7.5E-15 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_09015 cc3e6be9c333f6f53a774191485f76da 554 SUPERFAMILY SSF56645 67 299 3.52E-32 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_09015 cc3e6be9c333f6f53a774191485f76da 554 SUPERFAMILY SSF47203 299 449 1.3E-41 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_09015 cc3e6be9c333f6f53a774191485f76da 554 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 292 446 1.4E-32 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_09015 cc3e6be9c333f6f53a774191485f76da 554 Gene3D G3DSA:1.20.140.10 293 448 5.6E-37 T 11-10-2018 APT56_09015 cc3e6be9c333f6f53a774191485f76da 554 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 405 424 - T 11-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 APT56_09015 cc3e6be9c333f6f53a774191485f76da 554 Gene3D G3DSA:2.40.110.20 130 292 4.9E-51 T 11-10-2018 APT56_11500 4379dd7f0fcc59a82e5f381bd27df402 477 SUPERFAMILY SSF53720 2 476 1.96E-158 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_11500 4379dd7f0fcc59a82e5f381bd27df402 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_11500 4379dd7f0fcc59a82e5f381bd27df402 477 Gene3D G3DSA:3.40.605.10 22 468 1.9E-175 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_11500 4379dd7f0fcc59a82e5f381bd27df402 477 Pfam PF00171 Aldehyde dehydrogenase family 11 473 6.0E-159 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_11500 4379dd7f0fcc59a82e5f381bd27df402 477 Gene3D G3DSA:3.40.309.10 250 442 1.9E-175 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_02760 d93efe76ea10e050a0d29d931635e81b 1203 Gene3D G3DSA:3.40.50.970 17 232 3.4E-28 T 11-10-2018 APT56_02760 d93efe76ea10e050a0d29d931635e81b 1203 SUPERFAMILY SSF52518 459 645 1.66E-16 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_02760 d93efe76ea10e050a0d29d931635e81b 1203 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 479 628 1.3E-8 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APT56_02760 d93efe76ea10e050a0d29d931635e81b 1203 Gene3D G3DSA:3.40.50.970 466 644 1.1E-7 T 11-10-2018 APT56_02760 d93efe76ea10e050a0d29d931635e81b 1203 SUPERFAMILY SSF52518 30 209 5.0E-21 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_02760 d93efe76ea10e050a0d29d931635e81b 1203 Gene3D G3DSA:3.40.920.10 741 948 1.1E-17 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 APT56_02760 d93efe76ea10e050a0d29d931635e81b 1203 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 752 939 6.3E-22 T 11-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 APT56_02760 d93efe76ea10e050a0d29d931635e81b 1203 SUPERFAMILY SSF53323 744 945 3.27E-31 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 APT56_08725 ed4f3fe081580a9affe273bb5768bd10 302 Pfam PF00892 EamA-like transporter family 155 289 4.6E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_08725 ed4f3fe081580a9affe273bb5768bd10 302 Pfam PF00892 EamA-like transporter family 18 143 5.6E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_08725 ed4f3fe081580a9affe273bb5768bd10 302 SUPERFAMILY SSF103481 195 291 5.89E-13 T 11-10-2018 APT56_08725 ed4f3fe081580a9affe273bb5768bd10 302 SUPERFAMILY SSF103481 44 145 1.7E-12 T 11-10-2018 APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 Pfam PF13441 YMGG-like Gly-zipper 30 71 2.2E-8 T 11-10-2018 IPR027367 YMGG-like Gly-zipper APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 Gene3D G3DSA:3.30.1330.60 73 215 3.6E-42 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 Pfam PF00691 OmpA family 110 204 3.3E-20 T 11-10-2018 IPR006665 OmpA-like domain APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 193 213 7.1E-6 T 11-10-2018 APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 155 172 7.1E-6 T 11-10-2018 APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 173 192 7.1E-6 T 11-10-2018 APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 SUPERFAMILY SSF103088 98 210 2.62E-37 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 PRINTS PR01021 OMPA domain signature 140 155 3.0E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 PRINTS PR01021 OMPA domain signature 110 132 3.0E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_04595 57832f2191c1c03e0d8e88a0a06cac0c 215 PRINTS PR01021 OMPA domain signature 155 171 3.0E-13 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APT56_10850 b405839e0bdc25b78b742d4c71721c5a 540 SUPERFAMILY SSF56801 13 536 1.24E-145 T 11-10-2018 APT56_10850 b405839e0bdc25b78b742d4c71721c5a 540 Gene3D G3DSA:3.40.50.12780 15 436 6.4E-120 T 11-10-2018 APT56_10850 b405839e0bdc25b78b742d4c71721c5a 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 451 528 2.7E-21 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APT56_10850 b405839e0bdc25b78b742d4c71721c5a 540 ProSitePatterns PS00455 Putative AMP-binding domain signature. 190 201 - T 11-10-2018 IPR020845 AMP-binding, conserved site APT56_10850 b405839e0bdc25b78b742d4c71721c5a 540 Pfam PF00501 AMP-binding enzyme 38 440 6.0E-92 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_10850 b405839e0bdc25b78b742d4c71721c5a 540 Gene3D G3DSA:3.30.300.30 437 539 8.8E-30 T 11-10-2018 APT56_15180 6a3c3062af4c9ad5f489e4b28c03f9c5 213 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 11 207 2.3E-61 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT56_15180 6a3c3062af4c9ad5f489e4b28c03f9c5 213 Pfam PF02660 Glycerol-3-phosphate acyltransferase 17 199 2.2E-52 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT56_15180 6a3c3062af4c9ad5f489e4b28c03f9c5 213 SMART SM01207 16 200 8.5E-88 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT56_15180 6a3c3062af4c9ad5f489e4b28c03f9c5 213 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 13 208 20.872 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APT56_19225 f38817866aad065d87b9c531daeaf1a4 211 Pfam PF00043 Glutathione S-transferase, C-terminal domain 145 202 4.5E-10 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_19225 f38817866aad065d87b9c531daeaf1a4 211 SUPERFAMILY SSF47616 85 209 2.87E-28 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_19225 f38817866aad065d87b9c531daeaf1a4 211 Gene3D G3DSA:1.20.1050.10 91 205 8.7E-35 T 11-10-2018 APT56_19225 f38817866aad065d87b9c531daeaf1a4 211 Pfam PF13409 Glutathione S-transferase, N-terminal domain 21 84 6.4E-8 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_19225 f38817866aad065d87b9c531daeaf1a4 211 SUPERFAMILY SSF52833 13 93 1.42E-15 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_19225 f38817866aad065d87b9c531daeaf1a4 211 Gene3D G3DSA:3.40.30.10 12 89 3.4E-14 T 11-10-2018 APT56_00205 f8b644a72b611eb8f7dc8d0855b47cf6 463 Pfam PF00654 Voltage gated chloride channel 85 427 3.3E-82 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_00205 f8b644a72b611eb8f7dc8d0855b47cf6 463 Gene3D G3DSA:1.10.3080.10 25 446 7.8E-94 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 APT56_00205 f8b644a72b611eb8f7dc8d0855b47cf6 463 SUPERFAMILY SSF81340 19 441 1.96E-93 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 APT56_00205 f8b644a72b611eb8f7dc8d0855b47cf6 463 PRINTS PR00762 Chloride channel signature 127 146 5.4E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_00205 f8b644a72b611eb8f7dc8d0855b47cf6 463 PRINTS PR00762 Chloride channel signature 178 197 5.4E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_00205 f8b644a72b611eb8f7dc8d0855b47cf6 463 PRINTS PR00762 Chloride channel signature 395 414 5.4E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_00205 f8b644a72b611eb8f7dc8d0855b47cf6 463 PRINTS PR00762 Chloride channel signature 341 361 5.4E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_00205 f8b644a72b611eb8f7dc8d0855b47cf6 463 PRINTS PR00762 Chloride channel signature 377 393 5.4E-26 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APT56_20310 f6ab72fbdc228c7c952b78a8ef1259a4 391 SUPERFAMILY SSF50969 79 357 2.43E-13 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like APT56_20310 f6ab72fbdc228c7c952b78a8ef1259a4 391 PIRSF PIRSF028101 16 389 9.2E-105 T 11-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 APT56_20310 f6ab72fbdc228c7c952b78a8ef1259a4 391 Pfam PF07433 Protein of unknown function (DUF1513) 80 387 3.2E-110 T 11-10-2018 IPR008311 Uncharacterised conserved protein UCP028101 APT56_00690 398cf477ec8005a65a14f4229cedae8f 260 Gene3D G3DSA:3.40.190.10 30 247 5.4E-55 T 11-10-2018 APT56_00690 398cf477ec8005a65a14f4229cedae8f 260 SUPERFAMILY SSF53850 1 255 3.86E-57 T 11-10-2018 APT56_00690 398cf477ec8005a65a14f4229cedae8f 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 253 2.5E-51 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_00690 398cf477ec8005a65a14f4229cedae8f 260 SMART SM00062 35 255 3.0E-44 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_00690 398cf477ec8005a65a14f4229cedae8f 260 Gene3D G3DSA:3.40.190.10 122 213 5.4E-55 T 11-10-2018 APT56_07670 725770de40b4062a6e095d9ae6419902 342 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 29 336 3.4E-147 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 APT56_07670 725770de40b4062a6e095d9ae6419902 342 Gene3D G3DSA:3.40.190.10 36 304 4.3E-135 T 11-10-2018 APT56_07670 725770de40b4062a6e095d9ae6419902 342 SUPERFAMILY SSF53850 29 338 5.88E-93 T 11-10-2018 APT56_07670 725770de40b4062a6e095d9ae6419902 342 Gene3D G3DSA:3.40.190.10 123 335 4.3E-135 T 11-10-2018 APT56_07670 725770de40b4062a6e095d9ae6419902 342 Pfam PF13531 Bacterial extracellular solute-binding protein 39 289 3.1E-45 T 11-10-2018 APT56_07670 725770de40b4062a6e095d9ae6419902 342 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 154 162 - T 11-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 APT56_06470 fcc5a19b29042038049898b7e01683cf 285 Pfam PF12710 haloacid dehalogenase-like hydrolase 81 248 1.2E-18 T 11-10-2018 APT56_06470 fcc5a19b29042038049898b7e01683cf 285 Pfam PF13284 Domain of unknown function (DUF4072) 6 53 1.7E-13 T 11-10-2018 IPR025138 Domain of unknown function DUF4072 APT56_06470 fcc5a19b29042038049898b7e01683cf 285 SUPERFAMILY SSF56784 75 284 9.47E-48 T 11-10-2018 IPR036412 HAD-like superfamily APT56_06470 fcc5a19b29042038049898b7e01683cf 285 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 79 249 4.5E-32 T 11-10-2018 APT56_06470 fcc5a19b29042038049898b7e01683cf 285 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 74 280 2.1E-69 T 11-10-2018 APT56_06470 fcc5a19b29042038049898b7e01683cf 285 Gene3D G3DSA:3.40.50.1000 7 284 8.1E-71 T 11-10-2018 IPR023214 HAD superfamily APT56_21805 a1d1613cb5f23d2599a096dec25929ec 74 Pfam PF04325 Protein of unknown function (DUF465) 19 66 2.4E-17 T 11-10-2018 IPR007420 Protein of unknown function DUF465 APT56_21805 a1d1613cb5f23d2599a096dec25929ec 74 Gene3D G3DSA:1.20.58.660 1 73 1.3E-25 T 11-10-2018 APT56_15665 88a18c36670139c1ead9648abe18ec86 562 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 197 499 1.6E-36 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 APT56_15665 88a18c36670139c1ead9648abe18ec86 562 SUPERFAMILY SSF51690 195 548 1.41E-29 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APT56_08280 5bc12694a32c858bc4e38843537e4aac 239 Pfam PF03741 Integral membrane protein TerC family 14 190 8.2E-44 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 APT56_08280 5bc12694a32c858bc4e38843537e4aac 239 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 12 191 8.5E-72 T 11-10-2018 IPR022301 Integral membrane protein YjbE APT56_11290 e23cbd0a2a5e10d6e72ed2dbc82ee79d 329 Gene3D G3DSA:3.40.190.170 20 329 7.6E-109 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_11290 e23cbd0a2a5e10d6e72ed2dbc82ee79d 329 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 29 301 3.3E-73 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_11290 e23cbd0a2a5e10d6e72ed2dbc82ee79d 329 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 29 284 7.8E-71 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_11290 e23cbd0a2a5e10d6e72ed2dbc82ee79d 329 PIRSF PIRSF006470 2 325 3.8E-70 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 341 358 3.6E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 170 181 3.6E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 63 74 3.6E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 206 218 3.6E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 107 117 3.6E-5 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 PRINTS PR00184 Neisseria sp. porin signature 338 362 1.5E-5 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 PRINTS PR00184 Neisseria sp. porin signature 65 90 1.5E-5 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 Gene3D G3DSA:2.40.160.10 9 384 2.8E-79 T 11-10-2018 IPR023614 Porin domain superfamily APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 SUPERFAMILY SSF56935 20 384 7.33E-67 T 11-10-2018 APT56_15390 091b1fd01b843193e55a3d5bf2fead35 384 Pfam PF13609 Gram-negative porin 7 364 8.0E-51 T 11-10-2018 APT56_02640 5cb7100382406e5e84f1501b0cfc9fce 333 SUPERFAMILY SSF54427 208 328 2.01E-15 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_02640 5cb7100382406e5e84f1501b0cfc9fce 333 Pfam PF04280 Tim44-like domain 208 326 1.6E-12 T 11-10-2018 IPR007379 Tim44-like domain APT56_02640 5cb7100382406e5e84f1501b0cfc9fce 333 SMART SM00978 199 326 5.0E-34 T 11-10-2018 IPR007379 Tim44-like domain APT56_07395 acbcfa402b5b90070628c4206c34cb37 66 SUPERFAMILY SSF69047 1 65 8.63E-26 T 11-10-2018 IPR036629 YjbJ superfamily APT56_07395 acbcfa402b5b90070628c4206c34cb37 66 Pfam PF05532 CsbD-like 4 56 9.8E-21 T 11-10-2018 IPR008462 CsbD-like domain APT56_07395 acbcfa402b5b90070628c4206c34cb37 66 Gene3D G3DSA:1.10.1470.10 1 64 5.7E-31 T 11-10-2018 IPR036629 YjbJ superfamily APT56_07395 acbcfa402b5b90070628c4206c34cb37 66 PIRSF PIRSF039008 1 66 1.2E-31 T 11-10-2018 IPR026042 Stress response protein YjbJ APT56_01650 258e7356c5d64319a09b314610e36edf 96 Pfam PF02583 Metal-sensitive transcriptional repressor 7 92 1.3E-18 T 11-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 APT56_01650 258e7356c5d64319a09b314610e36edf 96 Gene3D G3DSA:1.20.58.1000 1 96 7.9E-28 T 11-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily APT56_26930 2fbcdab4d367ec1b5bf57e313a4e89d4 112 SUPERFAMILY SSF46785 18 103 4.32E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26930 2fbcdab4d367ec1b5bf57e313a4e89d4 112 SMART SM00418 22 100 6.0E-27 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_26930 2fbcdab4d367ec1b5bf57e313a4e89d4 112 Pfam PF01022 Bacterial regulatory protein, arsR family 30 74 2.1E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_26930 2fbcdab4d367ec1b5bf57e313a4e89d4 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 2.4E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_26930 2fbcdab4d367ec1b5bf57e313a4e89d4 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 2.4E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_26930 2fbcdab4d367ec1b5bf57e313a4e89d4 112 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 24 39 2.4E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APT56_26930 2fbcdab4d367ec1b5bf57e313a4e89d4 112 Gene3D G3DSA:1.10.10.10 10 108 7.7E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_21420 7731fe541ce8803b98b101617dc43686 333 Gene3D G3DSA:3.40.190.100 119 247 2.7E-48 T 11-10-2018 APT56_21420 7731fe541ce8803b98b101617dc43686 333 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 35 312 1.4E-60 T 11-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 APT56_21420 7731fe541ce8803b98b101617dc43686 333 SUPERFAMILY SSF53850 32 328 3.31E-79 T 11-10-2018 APT56_21420 7731fe541ce8803b98b101617dc43686 333 Gene3D G3DSA:3.40.190.10 36 321 2.7E-48 T 11-10-2018 APT56_08450 405b0e0af85f47a3117914fc9123d5f0 479 SUPERFAMILY SSF52467 306 479 2.91E-75 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APT56_08450 405b0e0af85f47a3117914fc9123d5f0 479 Gene3D G3DSA:3.40.50.1220 302 479 3.6E-83 T 11-10-2018 APT56_08450 405b0e0af85f47a3117914fc9123d5f0 479 PIRSF PIRSF000204 2 479 6.6E-211 T 11-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 APT56_08450 405b0e0af85f47a3117914fc9123d5f0 479 Pfam PF02233 NAD(P) transhydrogenase beta subunit 8 476 4.1E-190 T 11-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APT56_17695 d54921d186d07b4c1ca5a6dbefc57d2b 181 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 139 4.5E-63 T 11-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 APT56_17695 d54921d186d07b4c1ca5a6dbefc57d2b 181 Gene3D G3DSA:1.10.10.10 1 149 1.0E-49 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17695 d54921d186d07b4c1ca5a6dbefc57d2b 181 Pfam PF02082 Transcriptional regulator 1 83 3.4E-27 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type APT56_17695 d54921d186d07b4c1ca5a6dbefc57d2b 181 SUPERFAMILY SSF46785 2 137 6.81E-34 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17695 d54921d186d07b4c1ca5a6dbefc57d2b 181 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 136 9.7E-42 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type APT56_18930 eee7aad4a5c0709203be5ca1bfe7495d 245 SUPERFAMILY SSF53474 3 240 9.35E-27 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18930 eee7aad4a5c0709203be5ca1bfe7495d 245 Pfam PF12697 Alpha/beta hydrolase family 21 235 5.5E-10 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_18930 eee7aad4a5c0709203be5ca1bfe7495d 245 Gene3D G3DSA:3.40.50.1820 2 240 5.3E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_03835 f3303af683e1d47f25f769f169454275 143 SUPERFAMILY SSF55874 39 134 1.84E-7 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_03835 f3303af683e1d47f25f769f169454275 143 Gene3D G3DSA:3.30.565.10 2 143 4.1E-19 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APT56_03835 f3303af683e1d47f25f769f169454275 143 Pfam PF13581 Histidine kinase-like ATPase domain 13 138 1.8E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APT56_04580 aa245e32c8c2e138252a2ef9f7ee4f96 314 Gene3D G3DSA:3.60.21.10 2 310 3.9E-36 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_04580 aa245e32c8c2e138252a2ef9f7ee4f96 314 Pfam PF00149 Calcineurin-like phosphoesterase 4 110 5.5E-10 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_04580 aa245e32c8c2e138252a2ef9f7ee4f96 314 SUPERFAMILY SSF56300 3 163 2.22E-25 T 11-10-2018 APT56_23160 38765d879cd0aeaae9e0b00295cc558e 352 Gene3D G3DSA:3.40.1570.10 95 341 2.0E-130 T 11-10-2018 APT56_23160 38765d879cd0aeaae9e0b00295cc558e 352 Pfam PF05171 Haemin-degrading HemS.ChuX domain 41 165 1.8E-37 T 11-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 APT56_23160 38765d879cd0aeaae9e0b00295cc558e 352 Pfam PF05171 Haemin-degrading HemS.ChuX domain 213 344 6.0E-43 T 11-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 APT56_23160 38765d879cd0aeaae9e0b00295cc558e 352 Gene3D G3DSA:3.40.1570.10 23 288 2.0E-130 T 11-10-2018 APT56_23160 38765d879cd0aeaae9e0b00295cc558e 352 SUPERFAMILY SSF144064 18 346 3.43E-122 T 11-10-2018 APT56_21800 fb429b10117d86893d48cc745b6fd0e3 381 Pfam PF04116 Fatty acid hydroxylase superfamily 213 346 3.8E-28 T 11-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 APT56_19050 9c914643ab527c231f8d2e0274223c84 214 SUPERFAMILY SSF56214 97 179 1.45E-11 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_19050 9c914643ab527c231f8d2e0274223c84 214 Gene3D G3DSA:3.90.470.20 97 205 3.6E-6 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_19050 9c914643ab527c231f8d2e0274223c84 214 PRINTS PR01399 Enterobactin synthetase component D signature 64 82 1.2E-13 T 11-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 APT56_19050 9c914643ab527c231f8d2e0274223c84 214 PRINTS PR01399 Enterobactin synthetase component D signature 34 54 1.2E-13 T 11-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 APT56_19050 9c914643ab527c231f8d2e0274223c84 214 PRINTS PR01399 Enterobactin synthetase component D signature 140 156 1.2E-13 T 11-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 APT56_19050 9c914643ab527c231f8d2e0274223c84 214 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 99 178 1.6E-11 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APT56_07030 b30e4768184243840093cde62eed1a96 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 1.3E-45 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_07030 b30e4768184243840093cde62eed1a96 306 Gene3D G3DSA:1.10.3720.10 88 299 1.5E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_07030 b30e4768184243840093cde62eed1a96 306 SUPERFAMILY SSF161098 92 289 3.4E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16445 106a517579f84d812bc6865033d3793c 323 SUPERFAMILY SSF53850 25 300 3.76E-62 T 11-10-2018 APT56_16445 106a517579f84d812bc6865033d3793c 323 PIRSF PIRSF002825 15 319 1.6E-49 T 11-10-2018 IPR026045 Ferric binding protein APT56_16445 106a517579f84d812bc6865033d3793c 323 Gene3D G3DSA:3.40.190.10 127 240 1.7E-62 T 11-10-2018 APT56_16445 106a517579f84d812bc6865033d3793c 323 Pfam PF13343 Bacterial extracellular solute-binding protein 75 288 9.9E-31 T 11-10-2018 APT56_16445 106a517579f84d812bc6865033d3793c 323 Gene3D G3DSA:3.40.190.10 31 290 1.7E-62 T 11-10-2018 APT56_06735 d3b9cc2a59c74003cdc1a62faf944074 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 119 182 5.8E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_06735 d3b9cc2a59c74003cdc1a62faf944074 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 182 1.9E-34 T 11-10-2018 APT56_06735 d3b9cc2a59c74003cdc1a62faf944074 221 Gene3D G3DSA:3.40.50.1000 6 204 4.3E-54 T 11-10-2018 IPR023214 HAD superfamily APT56_06735 d3b9cc2a59c74003cdc1a62faf944074 221 Gene3D G3DSA:1.10.150.240 18 83 4.3E-54 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APT56_06735 d3b9cc2a59c74003cdc1a62faf944074 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 90 177 5.8E-10 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_06735 d3b9cc2a59c74003cdc1a62faf944074 221 SUPERFAMILY SSF56784 1 213 4.54E-57 T 11-10-2018 IPR036412 HAD-like superfamily APT56_24810 9c2c8f5f87e525cc7961711c84a5d54b 413 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 226 335 4.3E-26 T 11-10-2018 IPR000160 GGDEF domain APT56_24810 9c2c8f5f87e525cc7961711c84a5d54b 413 SUPERFAMILY SSF55073 233 405 4.39E-38 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_24810 9c2c8f5f87e525cc7961711c84a5d54b 413 Gene3D G3DSA:3.30.70.270 220 406 2.4E-48 T 11-10-2018 APT56_24810 9c2c8f5f87e525cc7961711c84a5d54b 413 SMART SM00267 213 404 2.6E-42 T 11-10-2018 IPR000160 GGDEF domain APT56_24810 9c2c8f5f87e525cc7961711c84a5d54b 413 Pfam PF00990 Diguanylate cyclase, GGDEF domain 228 334 1.4E-22 T 11-10-2018 IPR000160 GGDEF domain APT56_24810 9c2c8f5f87e525cc7961711c84a5d54b 413 Pfam PF00990 Diguanylate cyclase, GGDEF domain 357 400 1.1E-5 T 11-10-2018 IPR000160 GGDEF domain APT56_27480 b97f065c9492bd16b924048d00b4c96e 161 Pfam PF13185 GAF domain 54 153 1.0E-10 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_27480 b97f065c9492bd16b924048d00b4c96e 161 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 99 116 - T 11-10-2018 IPR000614 Free Met sulfoxide reductase conserved site APT56_27480 b97f065c9492bd16b924048d00b4c96e 161 Gene3D G3DSA:3.30.450.40 11 160 1.7E-65 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_27480 b97f065c9492bd16b924048d00b4c96e 161 SMART SM00065 29 161 0.0022 T 11-10-2018 IPR003018 GAF domain GO:0005515 APT56_27480 b97f065c9492bd16b924048d00b4c96e 161 SUPERFAMILY SSF55781 10 160 5.02E-44 T 11-10-2018 APT56_23470 1a8bba48988d068aaad09cc3c36c5915 219 Gene3D G3DSA:2.60.120.590 18 219 5.8E-56 T 11-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily APT56_23470 1a8bba48988d068aaad09cc3c36c5915 219 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 37 216 2.7E-50 T 11-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like APT56_23470 1a8bba48988d068aaad09cc3c36c5915 219 SUPERFAMILY SSF51197 25 217 2.06E-58 T 11-10-2018 APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 PRINTS PR00050 Cold shock protein signature 4 19 1.8E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 PRINTS PR00050 Cold shock protein signature 40 58 1.8E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 PRINTS PR00050 Cold shock protein signature 25 34 1.8E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 7.0E-29 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 SUPERFAMILY SSF50249 1 66 6.37E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 SMART SM00357 3 67 1.2E-29 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 Gene3D G3DSA:2.40.50.140 1 65 5.1E-28 T 11-10-2018 APT56_17760 b765a7a75fd1a21a9a0fd23cd72eae2c 67 PIRSF PIRSF002599 1 67 3.2E-23 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 4 286 5.2E-149 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 Gene3D G3DSA:3.30.930.10 1 210 9.5E-111 T 11-10-2018 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 SUPERFAMILY SSF55681 3 286 1.2E-130 T 11-10-2018 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 Gene3D G3DSA:1.20.58.180 211 292 1.2E-34 T 11-10-2018 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 3 293 4.6E-157 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 56 71 4.8E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 108 132 4.8E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 77 97 4.8E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 247 263 4.8E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 134 154 4.8E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 157 172 4.8E-66 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_04705 b29fbd28a5359a714ee8ee97b64609fc 303 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 2 287 60.075 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APT56_11175 3b0e2b22ad417d290c0f989d117d7a70 719 Gene3D G3DSA:2.40.170.20 190 719 2.8E-158 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_11175 3b0e2b22ad417d290c0f989d117d7a70 719 Pfam PF00593 TonB dependent receptor 291 717 4.7E-55 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_11175 3b0e2b22ad417d290c0f989d117d7a70 719 Gene3D G3DSA:2.170.130.10 62 189 2.3E-35 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_11175 3b0e2b22ad417d290c0f989d117d7a70 719 Pfam PF07715 TonB-dependent Receptor Plug Domain 84 182 7.1E-17 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_11175 3b0e2b22ad417d290c0f989d117d7a70 719 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 86 716 8.9E-104 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_11175 3b0e2b22ad417d290c0f989d117d7a70 719 SUPERFAMILY SSF56935 40 719 7.79E-126 T 11-10-2018 APT56_06355 0e507ab13fc75f60c3e73eb37c87ec66 323 Pfam PF00781 Diacylglycerol kinase catalytic domain 21 143 1.7E-21 T 11-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 APT56_06355 0e507ab13fc75f60c3e73eb37c87ec66 323 Gene3D G3DSA:2.60.200.40 146 307 1.2E-19 T 11-10-2018 APT56_06355 0e507ab13fc75f60c3e73eb37c87ec66 323 Gene3D G3DSA:3.40.50.10330 16 145 2.7E-23 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 APT56_06355 0e507ab13fc75f60c3e73eb37c87ec66 323 SUPERFAMILY SSF111331 20 316 1.28E-52 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 Pfam PF03466 LysR substrate binding domain 91 273 1.0E-25 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 SUPERFAMILY SSF53850 91 281 3.98E-25 T 11-10-2018 APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 Gene3D G3DSA:1.10.10.10 1 84 2.6E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.7E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 SUPERFAMILY SSF46785 2 85 2.39E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 Gene3D G3DSA:3.40.190.10 94 257 5.0E-52 T 11-10-2018 APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 Gene3D G3DSA:3.40.190.10 160 251 5.0E-52 T 11-10-2018 APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00980 7dd5a5d40d30a4b489b56b175e2b5ba7 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_19455 eec20b4bff44bf48d89e73ad6e62a304 442 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 290 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_19455 eec20b4bff44bf48d89e73ad6e62a304 442 Gene3D G3DSA:3.90.1150.10 45 433 3.9E-138 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_19455 eec20b4bff44bf48d89e73ad6e62a304 442 PIRSF PIRSF000521 36 144 1.8E-7 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_19455 eec20b4bff44bf48d89e73ad6e62a304 442 PIRSF PIRSF000521 199 442 5.4E-30 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_19455 eec20b4bff44bf48d89e73ad6e62a304 442 Gene3D G3DSA:3.40.640.10 78 337 3.9E-138 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_19455 eec20b4bff44bf48d89e73ad6e62a304 442 SUPERFAMILY SSF53383 37 441 1.57E-106 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_19455 eec20b4bff44bf48d89e73ad6e62a304 442 Pfam PF00202 Aminotransferase class-III 45 436 3.5E-76 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APT56_15320 b57d625d7e02cbb75c0a4db231050a24 433 SUPERFAMILY SSF51905 1 418 8.03E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15320 b57d625d7e02cbb75c0a4db231050a24 433 Gene3D G3DSA:3.30.9.10 134 362 5.4E-56 T 11-10-2018 APT56_15320 b57d625d7e02cbb75c0a4db231050a24 433 SUPERFAMILY SSF54373 270 360 6.93E-18 T 11-10-2018 APT56_15320 b57d625d7e02cbb75c0a4db231050a24 433 Pfam PF01266 FAD dependent oxidoreductase 2 397 5.6E-77 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_15320 b57d625d7e02cbb75c0a4db231050a24 433 Gene3D G3DSA:3.50.50.60 100 405 5.4E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15320 b57d625d7e02cbb75c0a4db231050a24 433 Gene3D G3DSA:3.50.50.60 1 73 7.6E-14 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15320 b57d625d7e02cbb75c0a4db231050a24 433 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 50.167 T 11-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 SUPERFAMILY SSF51735 6 254 1.69E-76 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 252 1.0E-60 T 11-10-2018 APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.0E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.0E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.0E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.0E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.0E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.0E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 Gene3D G3DSA:3.40.50.720 1 255 2.5E-77 T 11-10-2018 APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 4.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_19675 35c35db3b58fc61de04e8e8ae4305fdb 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.2E-10 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03950 a075d2284dc95e8e75afd56f24593a50 529 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 71 233 8.5E-21 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 SUPERFAMILY SSF46785 1 85 5.17E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 Gene3D G3DSA:1.10.10.10 1 82 6.6E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 SUPERFAMILY SSF53850 91 297 1.41E-37 T 11-10-2018 APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 Gene3D G3DSA:3.40.190.10 92 278 2.9E-38 T 11-10-2018 APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 Gene3D G3DSA:3.40.190.10 164 266 2.9E-38 T 11-10-2018 APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.1E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.4E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.4E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.4E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_00335 bfe36c43b2554ccbef8a442a25ed356c 305 Pfam PF03466 LysR substrate binding domain 91 290 3.0E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_25480 df2d6cd3231c406912f96a075dd5d2a7 102 PIRSF PIRSF028744 1 100 3.7E-37 T 11-10-2018 IPR014056 Addiction module killer protein, predicted APT56_25480 df2d6cd3231c406912f96a075dd5d2a7 102 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 29 93 1.7E-6 T 11-10-2018 IPR009241 Toxin HigB-like APT56_25480 df2d6cd3231c406912f96a075dd5d2a7 102 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 4 95 6.1E-37 T 11-10-2018 IPR014056 Addiction module killer protein, predicted APT56_12585 51769d5883198c0b1242a02fc10bcdbd 179 SUPERFAMILY SSF52833 22 179 8.51E-42 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_12585 51769d5883198c0b1242a02fc10bcdbd 179 PIRSF PIRSF000239 18 179 1.7E-21 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_12585 51769d5883198c0b1242a02fc10bcdbd 179 Pfam PF00578 AhpC/TSA family 25 153 5.0E-26 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APT56_12585 51769d5883198c0b1242a02fc10bcdbd 179 Gene3D G3DSA:3.40.30.10 17 177 6.9E-36 T 11-10-2018 APT56_15510 ddf24cfc4fbfa20433094951ee3708bd 253 Pfam PF05742 Transport and Golgi organisation 2 1 239 6.5E-56 T 11-10-2018 IPR008551 Transport and Golgi organisation protein 2 APT56_15510 ddf24cfc4fbfa20433094951ee3708bd 253 Gene3D G3DSA:3.60.60.10 4 248 6.5E-6 T 11-10-2018 APT56_23945 cedb61ddff238113d5eb381b0928c0ac 396 Pfam PF07690 Major Facilitator Superfamily 14 350 2.0E-16 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_23945 cedb61ddff238113d5eb381b0928c0ac 396 SUPERFAMILY SSF103473 4 393 2.75E-27 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_23945 cedb61ddff238113d5eb381b0928c0ac 396 Gene3D G3DSA:1.20.1250.20 2 390 5.0E-22 T 11-10-2018 APT56_08820 5705efc9a748eed17113b124b9213c33 446 Pfam PF00764 Arginosuccinate synthase 16 394 4.4E-60 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_08820 5705efc9a748eed17113b124b9213c33 446 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_08820 5705efc9a748eed17113b124b9213c33 446 Gene3D G3DSA:1.10.287.400 377 440 3.4E-31 T 11-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_08820 5705efc9a748eed17113b124b9213c33 446 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 444 68.993 T 11-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APT56_08820 5705efc9a748eed17113b124b9213c33 446 SUPERFAMILY SSF69864 190 435 3.92E-77 T 11-10-2018 APT56_08820 5705efc9a748eed17113b124b9213c33 446 Gene3D G3DSA:3.90.1260.10 74 367 3.6E-119 T 11-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_08820 5705efc9a748eed17113b124b9213c33 446 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_08820 5705efc9a748eed17113b124b9213c33 446 Gene3D G3DSA:3.40.50.620 14 191 3.6E-119 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_08820 5705efc9a748eed17113b124b9213c33 446 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 420 8.4E-159 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APT56_08820 5705efc9a748eed17113b124b9213c33 446 SUPERFAMILY SSF52402 4 185 9.86E-34 T 11-10-2018 APT56_04155 e1545882f5fc46cd7703431ded56ea77 309 Gene3D G3DSA:3.40.50.720 15 309 2.9E-105 T 11-10-2018 APT56_04155 e1545882f5fc46cd7703431ded56ea77 309 SUPERFAMILY SSF51735 95 275 2.75E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_04155 e1545882f5fc46cd7703431ded56ea77 309 Gene3D G3DSA:3.40.50.720 93 275 2.9E-105 T 11-10-2018 APT56_04155 e1545882f5fc46cd7703431ded56ea77 309 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 103 274 3.1E-46 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_25060 5e3b00a5383306e331348b8c8fb7aa6d 379 SUPERFAMILY SSF160991 3 356 2.48E-78 T 11-10-2018 APT56_25060 5e3b00a5383306e331348b8c8fb7aa6d 379 Pfam PF06032 Protein of unknown function (DUF917) 8 330 2.0E-56 T 11-10-2018 IPR010318 Protein of unknown function DUF917 APT56_25060 5e3b00a5383306e331348b8c8fb7aa6d 379 Gene3D G3DSA:3.40.1610.10 3 224 5.2E-21 T 11-10-2018 IPR027479 Protein of unknown function DUF917, N-terminal APT56_01800 fc2b1920f404ee743aebb845156fbb21 145 PIRSF PIRSF006276 1 145 7.2E-21 T 11-10-2018 IPR006015 Universal stress protein A APT56_01800 fc2b1920f404ee743aebb845156fbb21 145 Pfam PF00582 Universal stress protein family 1 145 7.0E-32 T 11-10-2018 IPR006016 UspA APT56_01800 fc2b1920f404ee743aebb845156fbb21 145 SUPERFAMILY SSF52402 1 145 1.34E-34 T 11-10-2018 APT56_01800 fc2b1920f404ee743aebb845156fbb21 145 Gene3D G3DSA:3.40.50.620 1 145 1.3E-36 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_01800 fc2b1920f404ee743aebb845156fbb21 145 PRINTS PR01438 Universal stress protein signature 105 117 1.3E-16 T 11-10-2018 IPR006015 Universal stress protein A APT56_01800 fc2b1920f404ee743aebb845156fbb21 145 PRINTS PR01438 Universal stress protein signature 2 20 1.3E-16 T 11-10-2018 IPR006015 Universal stress protein A APT56_01800 fc2b1920f404ee743aebb845156fbb21 145 PRINTS PR01438 Universal stress protein signature 123 145 1.3E-16 T 11-10-2018 IPR006015 Universal stress protein A APT56_05125 94a856bc1016916639d44bf02098a2d1 514 Gene3D G3DSA:3.40.920.10 10 222 2.1E-6 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 APT56_05125 94a856bc1016916639d44bf02098a2d1 514 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 20 211 1.2E-14 T 11-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 APT56_05125 94a856bc1016916639d44bf02098a2d1 514 SUPERFAMILY SSF53323 13 233 6.8E-8 T 11-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 APT56_03105 430a368789ae2d1ec8de0d699f96e7b5 414 SUPERFAMILY SSF54427 241 384 2.76E-24 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_03105 430a368789ae2d1ec8de0d699f96e7b5 414 Gene3D G3DSA:3.10.450.50 243 379 4.7E-21 T 11-10-2018 APT56_03105 430a368789ae2d1ec8de0d699f96e7b5 414 SUPERFAMILY SSF53474 6 234 5.15E-45 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_03105 430a368789ae2d1ec8de0d699f96e7b5 414 Pfam PF01738 Dienelactone hydrolase family 20 234 4.1E-45 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 APT56_03105 430a368789ae2d1ec8de0d699f96e7b5 414 Gene3D G3DSA:3.40.50.1820 5 235 1.1E-56 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_04430 1e679ee0396ec8646a849fa284301c6b 184 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 1 184 37.452 T 11-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP APT56_04430 1e679ee0396ec8646a849fa284301c6b 184 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 38 181 6.2E-62 T 11-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP APT56_04430 1e679ee0396ec8646a849fa284301c6b 184 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 36 171 2.0E-61 T 11-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP APT56_04430 1e679ee0396ec8646a849fa284301c6b 184 SUPERFAMILY SSF56925 26 184 1.18E-68 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APT56_04430 1e679ee0396ec8646a849fa284301c6b 184 Gene3D G3DSA:2.40.160.20 26 184 5.1E-69 T 11-10-2018 APT56_12305 42d2e8c34af3b3d109c54bfeeaba2ece 398 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 2 395 34.91 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 APT56_12305 42d2e8c34af3b3d109c54bfeeaba2ece 398 SUPERFAMILY SSF53756 3 369 2.41E-28 T 11-10-2018 APT56_12305 42d2e8c34af3b3d109c54bfeeaba2ece 398 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 392 3.7E-96 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 APT56_12305 42d2e8c34af3b3d109c54bfeeaba2ece 398 Pfam PF02684 Lipid-A-disaccharide synthetase 6 389 1.5E-90 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 APT56_10150 ffbc22699b2c734d9de61173a101bc1e 426 Pfam PF06381 Protein of unknown function (DUF1073) 29 378 5.2E-81 T 11-10-2018 IPR024459 Protein of unknown function DUF1073 APT56_02070 a8c6e66117fad25cba5b6dfc174382ea 318 Gene3D G3DSA:3.40.50.720 107 302 2.5E-116 T 11-10-2018 APT56_02070 a8c6e66117fad25cba5b6dfc174382ea 318 Gene3D G3DSA:3.40.50.720 2 310 2.5E-116 T 11-10-2018 APT56_02070 a8c6e66117fad25cba5b6dfc174382ea 318 SUPERFAMILY SSF52283 2 127 1.74E-22 T 11-10-2018 APT56_02070 a8c6e66117fad25cba5b6dfc174382ea 318 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 313 1.3E-12 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_02070 a8c6e66117fad25cba5b6dfc174382ea 318 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 175 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APT56_02070 a8c6e66117fad25cba5b6dfc174382ea 318 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 286 1.2E-53 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_02070 a8c6e66117fad25cba5b6dfc174382ea 318 SUPERFAMILY SSF51735 107 286 3.6E-51 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_02885 1634a4bc06dd0ef4fb782539de62e6d5 296 Hamap MF_01805 Segregation and condensation protein A [scpA]. 54 288 20.843 T 11-10-2018 IPR003768 Segregation and condensation protein A APT56_02885 1634a4bc06dd0ef4fb782539de62e6d5 296 Pfam PF02616 Segregation and condensation protein ScpA 71 286 8.1E-33 T 11-10-2018 IPR003768 Segregation and condensation protein A APT56_25785 b7fafc0b2fa4a846cd7d7d21751dd525 271 SUPERFAMILY SSF49354 24 165 1.28E-21 T 11-10-2018 IPR008962 PapD-like superfamily APT56_25785 b7fafc0b2fa4a846cd7d7d21751dd525 271 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 38 164 1.0E-12 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 APT56_25785 b7fafc0b2fa4a846cd7d7d21751dd525 271 Gene3D G3DSA:2.60.40.10 36 161 7.7E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold APT56_25785 b7fafc0b2fa4a846cd7d7d21751dd525 271 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 86 - T 11-10-2018 IPR010916 TonB box, conserved site APT56_02745 f9140a10c7a31c3bc3da3c6ab3a0f1d9 481 ProSitePatterns PS00571 Amidases signature. 161 192 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT56_02745 f9140a10c7a31c3bc3da3c6ab3a0f1d9 481 Pfam PF01425 Amidase 30 463 1.6E-93 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_02745 f9140a10c7a31c3bc3da3c6ab3a0f1d9 481 Gene3D G3DSA:3.90.1300.10 12 474 8.6E-121 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_02745 f9140a10c7a31c3bc3da3c6ab3a0f1d9 481 SUPERFAMILY SSF75304 12 473 9.94E-112 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_03725 cb4e5a71bff2f42ebd3873ba341bd864 136 Pfam PF14559 Tetratricopeptide repeat 80 121 1.6E-5 T 11-10-2018 APT56_03725 cb4e5a71bff2f42ebd3873ba341bd864 136 Gene3D G3DSA:1.25.40.10 1 132 5.0E-31 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_03725 cb4e5a71bff2f42ebd3873ba341bd864 136 SUPERFAMILY SSF48452 9 115 1.05E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_03725 cb4e5a71bff2f42ebd3873ba341bd864 136 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 3 127 8.7E-33 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_03725 cb4e5a71bff2f42ebd3873ba341bd864 136 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 23 42 6.2E-5 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_03725 cb4e5a71bff2f42ebd3873ba341bd864 136 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 47 69 6.2E-5 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_03725 cb4e5a71bff2f42ebd3873ba341bd864 136 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 79 101 6.2E-5 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD APT56_10665 ce9f7e258f9c3c7750a5eff362486413 304 SUPERFAMILY SSF103481 186 285 5.23E-12 T 11-10-2018 APT56_10665 ce9f7e258f9c3c7750a5eff362486413 304 SUPERFAMILY SSF103481 41 138 7.59E-14 T 11-10-2018 APT56_10665 ce9f7e258f9c3c7750a5eff362486413 304 Pfam PF00892 EamA-like transporter family 151 283 3.1E-21 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_10665 ce9f7e258f9c3c7750a5eff362486413 304 Pfam PF00892 EamA-like transporter family 3 135 2.9E-22 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_25995 4f6358a909b497a38f42b0e12a56cae1 216 Pfam PF00484 Carbonic anhydrase 37 195 3.7E-47 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT56_25995 4f6358a909b497a38f42b0e12a56cae1 216 Gene3D G3DSA:3.40.1050.10 2 204 6.5E-65 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 APT56_25995 4f6358a909b497a38f42b0e12a56cae1 216 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 89 109 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT56_25995 4f6358a909b497a38f42b0e12a56cae1 216 SUPERFAMILY SSF53056 3 209 3.92E-58 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 APT56_25995 4f6358a909b497a38f42b0e12a56cae1 216 SMART SM00947 30 200 2.5E-63 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 APT56_23745 902627d806ea1e92281beb5ef20c200b 270 Pfam PF00149 Calcineurin-like phosphoesterase 20 233 9.2E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_23745 902627d806ea1e92281beb5ef20c200b 270 Gene3D G3DSA:3.60.21.10 1 259 3.8E-11 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_23745 902627d806ea1e92281beb5ef20c200b 270 SUPERFAMILY SSF56300 1 256 6.99E-26 T 11-10-2018 APT56_03850 af7e3f5e078a7a0a3204e80784d46c6c 311 PIRSF PIRSF019423 2 310 3.0E-146 T 11-10-2018 IPR011213 Nicotinic acid mononucleotide biosynthesis protein APT56_03850 af7e3f5e078a7a0a3204e80784d46c6c 311 SUPERFAMILY SSF46785 228 299 2.31E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_03850 af7e3f5e078a7a0a3204e80784d46c6c 311 SUPERFAMILY SSF55811 15 139 1.5E-8 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APT56_03850 af7e3f5e078a7a0a3204e80784d46c6c 311 Gene3D G3DSA:1.10.10.10 221 298 3.1E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_26830 090d551ebca4cd4987096325a9cf2ec3 210 Pfam PF01810 LysE type translocator 24 208 4.0E-33 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_20940 a766871e924dc839a8f3a057fa5883e0 316 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 128 272 1.0E-12 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APT56_20940 a766871e924dc839a8f3a057fa5883e0 316 Gene3D G3DSA:3.40.50.2000 6 131 4.6E-6 T 11-10-2018 APT56_20940 a766871e924dc839a8f3a057fa5883e0 316 SUPERFAMILY SSF53756 10 309 2.86E-38 T 11-10-2018 APT56_20940 a766871e924dc839a8f3a057fa5883e0 316 Gene3D G3DSA:3.40.50.2000 149 311 5.0E-24 T 11-10-2018 APT56_10730 95622b06b93024a960f1857ba2e40fae 246 SMART SM00382 31 211 5.1E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_10730 95622b06b93024a960f1857ba2e40fae 246 SUPERFAMILY SSF52540 5 236 4.13E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_10730 95622b06b93024a960f1857ba2e40fae 246 Pfam PF00005 ABC transporter 23 160 2.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_10730 95622b06b93024a960f1857ba2e40fae 246 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_10730 95622b06b93024a960f1857ba2e40fae 246 Gene3D G3DSA:3.40.50.300 2 225 2.2E-61 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 Gene3D G3DSA:3.60.20.40 354 531 2.9E-67 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 Pfam PF01019 Gamma-glutamyltranspeptidase 37 526 6.6E-159 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 24 523 1.8E-111 T 11-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 Gene3D G3DSA:1.10.246.130 243 353 3.4E-32 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 SUPERFAMILY SSF56235 10 531 4.82E-175 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 350 368 8.6E-43 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 429 446 8.6E-43 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 129 148 8.6E-43 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 44 69 8.6E-43 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 374 392 8.6E-43 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 256 275 8.6E-43 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 420 8.6E-43 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 111 129 8.6E-43 T 11-10-2018 APT56_20820 9bde301d94c709c93ab18a3a6f2222e5 531 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 227 243 8.6E-43 T 11-10-2018 APT56_20185 8e1228c1fa91d1b10c5205366a1afaac 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 40 71 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_20185 8e1228c1fa91d1b10c5205366a1afaac 207 SUPERFAMILY SSF46689 16 91 1.65E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_20185 8e1228c1fa91d1b10c5205366a1afaac 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 4.2E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_20185 8e1228c1fa91d1b10c5205366a1afaac 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 4.2E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_20185 8e1228c1fa91d1b10c5205366a1afaac 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 74 5.4E-17 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_20185 8e1228c1fa91d1b10c5205366a1afaac 207 Gene3D G3DSA:1.10.357.10 20 207 3.7E-36 T 11-10-2018 APT56_20185 8e1228c1fa91d1b10c5205366a1afaac 207 SUPERFAMILY SSF48498 97 203 2.71E-6 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_11045 53af46ebc9ff69d0d192d6e90d74cbbc 208 Gene3D G3DSA:3.40.50.300 1 200 3.8E-43 T 11-10-2018 APT56_11045 53af46ebc9ff69d0d192d6e90d74cbbc 208 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 203 2.5E-63 T 11-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 APT56_11045 53af46ebc9ff69d0d192d6e90d74cbbc 208 SMART SM00382 26 208 0.0064 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_11045 53af46ebc9ff69d0d192d6e90d74cbbc 208 Pfam PF00005 ABC transporter 18 160 1.6E-20 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_11045 53af46ebc9ff69d0d192d6e90d74cbbc 208 SUPERFAMILY SSF52540 2 190 4.44E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19775 c544e5decce8542c19822fe927fdc45d 442 Pfam PF13629 Pilus formation protein N terminal region 23 97 4.1E-19 T 11-10-2018 IPR032789 Pilus formation protein, N-terminal APT56_19775 c544e5decce8542c19822fe927fdc45d 442 PRINTS PR00811 Bacterial general secretion pathway protein D signature 266 276 1.0E-14 T 11-10-2018 IPR001775 GspD/PilQ family APT56_19775 c544e5decce8542c19822fe927fdc45d 442 PRINTS PR00811 Bacterial general secretion pathway protein D signature 162 172 1.0E-14 T 11-10-2018 IPR001775 GspD/PilQ family APT56_19775 c544e5decce8542c19822fe927fdc45d 442 PRINTS PR00811 Bacterial general secretion pathway protein D signature 363 381 1.0E-14 T 11-10-2018 IPR001775 GspD/PilQ family APT56_19775 c544e5decce8542c19822fe927fdc45d 442 PRINTS PR00811 Bacterial general secretion pathway protein D signature 229 253 1.0E-14 T 11-10-2018 IPR001775 GspD/PilQ family APT56_19775 c544e5decce8542c19822fe927fdc45d 442 PRINTS PR00811 Bacterial general secretion pathway protein D signature 386 400 1.0E-14 T 11-10-2018 IPR001775 GspD/PilQ family APT56_19775 c544e5decce8542c19822fe927fdc45d 442 Pfam PF00263 Bacterial type II and III secretion system protein 233 399 1.5E-43 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 APT56_06110 3796a2f458295f6fb9c4e9547d8635a5 314 PIRSF PIRSF018266 1 313 6.1E-78 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_06110 3796a2f458295f6fb9c4e9547d8635a5 314 Gene3D G3DSA:2.60.120.1440 100 231 1.2E-13 T 11-10-2018 APT56_06110 3796a2f458295f6fb9c4e9547d8635a5 314 Pfam PF16220 Domain of unknown function (DUF4880) 8 49 1.5E-11 T 11-10-2018 IPR032623 FecR, N-terminal APT56_06110 3796a2f458295f6fb9c4e9547d8635a5 314 Pfam PF04773 FecR protein 108 199 8.2E-14 T 11-10-2018 IPR006860 FecR protein APT56_03320 d7e7bd84654c21bf51497f0735baf483 167 Pfam PF05433 Glycine zipper 2TM domain 75 115 2.5E-8 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 APT56_03185 57b01cffad409ab5881534a0400efdeb 241 SUPERFAMILY SSF52540 1 235 1.39E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03185 57b01cffad409ab5881534a0400efdeb 241 Pfam PF00005 ABC transporter 17 165 4.6E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_03185 57b01cffad409ab5881534a0400efdeb 241 PIRSF PIRSF039085 1 240 2.9E-106 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_03185 57b01cffad409ab5881534a0400efdeb 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_03185 57b01cffad409ab5881534a0400efdeb 241 SMART SM00382 26 213 1.7E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_03185 57b01cffad409ab5881534a0400efdeb 241 Gene3D G3DSA:3.40.50.300 1 241 2.3E-78 T 11-10-2018 APT56_09755 07b61e5cb672eb588fbcd2992e67e641 218 SMART SM00421 146 203 1.9E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09755 07b61e5cb672eb588fbcd2992e67e641 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 7.0E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09755 07b61e5cb672eb588fbcd2992e67e641 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 7.0E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09755 07b61e5cb672eb588fbcd2992e67e641 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 7.0E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09755 07b61e5cb672eb588fbcd2992e67e641 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 201 1.8E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09755 07b61e5cb672eb588fbcd2992e67e641 218 SUPERFAMILY SSF46894 145 204 1.73E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_09755 07b61e5cb672eb588fbcd2992e67e641 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_09755 07b61e5cb672eb588fbcd2992e67e641 218 Gene3D G3DSA:1.10.10.10 97 214 7.9E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_13105 240475601b6b0f024d612de6f3e089ec 132 Pfam PF01042 Endoribonuclease L-PSP 13 127 2.8E-27 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_13105 240475601b6b0f024d612de6f3e089ec 132 SUPERFAMILY SSF55298 8 129 5.03E-37 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_13105 240475601b6b0f024d612de6f3e089ec 132 Gene3D G3DSA:3.30.1330.40 1 130 2.1E-41 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_27090 a43dad84047bd23689866671cc774069 78 Pfam PF06945 Protein of unknown function (DUF1289) 26 70 1.3E-17 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 APT56_01310 2909930ec82d3505dbb0dcccf7684363 256 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 4 248 41.455 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 APT56_01310 2909930ec82d3505dbb0dcccf7684363 256 SUPERFAMILY SSF88713 5 252 3.48E-90 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_01310 2909930ec82d3505dbb0dcccf7684363 256 Gene3D G3DSA:3.20.20.370 4 255 3.4E-93 T 11-10-2018 APT56_01310 2909930ec82d3505dbb0dcccf7684363 256 Pfam PF03746 LamB/YcsF family 6 244 6.6E-91 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 100 110 6.3E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 56 67 6.3E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 195 207 6.3E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 327 344 6.3E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 159 170 6.3E-7 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 Pfam PF13609 Gram-negative porin 7 350 7.8E-57 T 11-10-2018 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 SUPERFAMILY SSF56935 21 370 1.99E-74 T 11-10-2018 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 PRINTS PR00184 Neisseria sp. porin signature 58 83 1.8E-10 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 PRINTS PR00184 Neisseria sp. porin signature 158 175 1.8E-10 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 PRINTS PR00184 Neisseria sp. porin signature 324 348 1.8E-10 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_06385 0932fb43b8283ded28af8d03a8f8751e 370 Gene3D G3DSA:2.40.160.10 11 370 6.0E-86 T 11-10-2018 IPR023614 Porin domain superfamily APT56_20265 6b29f7cc29d56d61c4a6f305fbcd3c3e 169 PIRSF PIRSF001467 1 169 2.7E-26 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 APT56_20265 6b29f7cc29d56d61c4a6f305fbcd3c3e 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 20 35 6.7E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 APT56_20265 6b29f7cc29d56d61c4a6f305fbcd3c3e 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 46 58 6.7E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 APT56_20265 6b29f7cc29d56d61c4a6f305fbcd3c3e 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 138 6.7E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 APT56_20265 6b29f7cc29d56d61c4a6f305fbcd3c3e 169 SUPERFAMILY SSF50891 2 168 2.92E-58 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_20265 6b29f7cc29d56d61c4a6f305fbcd3c3e 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 166 1.4E-46 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 APT56_20265 6b29f7cc29d56d61c4a6f305fbcd3c3e 169 Gene3D G3DSA:2.40.100.10 3 168 8.6E-70 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APT56_20265 6b29f7cc29d56d61c4a6f305fbcd3c3e 169 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 41 58 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 APT56_07315 f2ad456c2c05a731a39390321195f1f3 262 Gene3D G3DSA:1.25.40.10 30 251 7.2E-56 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07315 f2ad456c2c05a731a39390321195f1f3 262 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 241 37.884 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD APT56_07315 f2ad456c2c05a731a39390321195f1f3 262 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 2 246 1.0E-84 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD APT56_07315 f2ad456c2c05a731a39390321195f1f3 262 Pfam PF13525 Outer membrane lipoprotein 30 235 5.0E-61 T 11-10-2018 IPR039565 Outer membrane lipoprotein BamD-like APT56_07315 f2ad456c2c05a731a39390321195f1f3 262 SUPERFAMILY SSF48452 30 108 2.23E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_03610 a37bc6359b076b43e0f63eac550e9d9a 216 Gene3D G3DSA:3.40.30.10 1 213 2.0E-68 T 11-10-2018 APT56_03610 a37bc6359b076b43e0f63eac550e9d9a 216 SUPERFAMILY SSF52833 4 214 3.16E-51 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_03610 a37bc6359b076b43e0f63eac550e9d9a 216 Pfam PF01323 DSBA-like thioredoxin domain 5 209 3.3E-39 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 APT56_21705 86a3771ff3aafe973e39b900fd72e8e5 337 Pfam PF05544 Proline racemase 9 334 6.6E-94 T 11-10-2018 IPR008794 Proline racemase family APT56_21705 86a3771ff3aafe973e39b900fd72e8e5 337 SUPERFAMILY SSF54506 1 334 1.57E-94 T 11-10-2018 APT56_21705 86a3771ff3aafe973e39b900fd72e8e5 337 Gene3D G3DSA:3.10.310.10 7 335 1.1E-106 T 11-10-2018 APT56_21705 86a3771ff3aafe973e39b900fd72e8e5 337 PIRSF PIRSF029792 1 337 2.0E-100 T 11-10-2018 IPR008794 Proline racemase family APT56_21705 86a3771ff3aafe973e39b900fd72e8e5 337 Gene3D G3DSA:3.10.310.10 147 313 1.1E-106 T 11-10-2018 APT56_21440 5c347666adaa320926924d16adf9e44f 55 SUPERFAMILY SSF57829 1 53 2.81E-19 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 APT56_21440 5c347666adaa320926924d16adf9e44f 55 Pfam PF00471 Ribosomal protein L33 7 53 1.7E-17 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_21440 5c347666adaa320926924d16adf9e44f 55 Gene3D G3DSA:2.20.28.120 1 55 3.7E-29 T 11-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_21440 5c347666adaa320926924d16adf9e44f 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.7E-25 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_21440 5c347666adaa320926924d16adf9e44f 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 14.773 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_13320 d4e5619fd7f289126ad930ecabfd7db1 112 SUPERFAMILY SSF50249 5 89 9.94E-7 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_02440 49f3d39e4c05c016d91af4f0ccc39caa 313 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 31 185 3.0E-13 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 APT56_02440 49f3d39e4c05c016d91af4f0ccc39caa 313 SUPERFAMILY SSF53187 4 309 1.35E-56 T 11-10-2018 APT56_02440 49f3d39e4c05c016d91af4f0ccc39caa 313 Gene3D G3DSA:3.40.630.10 14 311 9.8E-49 T 11-10-2018 APT56_05790 0e0037e97a5b1612d5e0c8e24373e2c3 422 Pfam PF01168 Alanine racemase, N-terminal domain 52 251 1.9E-10 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APT56_05790 0e0037e97a5b1612d5e0c8e24373e2c3 422 Gene3D G3DSA:2.40.37.20 33 422 5.0E-144 T 11-10-2018 APT56_05790 0e0037e97a5b1612d5e0c8e24373e2c3 422 SMART SM01119 310 409 3.9E-37 T 11-10-2018 IPR026956 D-serine dehydratase-like domain APT56_05790 0e0037e97a5b1612d5e0c8e24373e2c3 422 Gene3D G3DSA:3.20.20.10 52 284 5.0E-144 T 11-10-2018 IPR029066 PLP-binding barrel APT56_05790 0e0037e97a5b1612d5e0c8e24373e2c3 422 SUPERFAMILY SSF51419 52 283 7.85E-30 T 11-10-2018 IPR029066 PLP-binding barrel APT56_05790 0e0037e97a5b1612d5e0c8e24373e2c3 422 Pfam PF14031 Putative serine dehydratase domain 310 408 6.8E-17 T 11-10-2018 IPR026956 D-serine dehydratase-like domain APT56_03195 fa449e8e8df8f3af7149eef0c1aa0e50 233 Gene3D G3DSA:1.10.3720.10 5 229 1.3E-47 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03195 fa449e8e8df8f3af7149eef0c1aa0e50 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 228 5.6E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_03195 fa449e8e8df8f3af7149eef0c1aa0e50 233 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 19 122 4.0E-16 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_03195 fa449e8e8df8f3af7149eef0c1aa0e50 233 SUPERFAMILY SSF161098 18 213 6.15E-40 T 11-10-2018 IPR035906 MetI-like superfamily APT56_06360 51fc14846eef97bd21fcfcf086cf3953 264 SUPERFAMILY SSF56300 1 235 3.24E-52 T 11-10-2018 APT56_06360 51fc14846eef97bd21fcfcf086cf3953 264 Gene3D G3DSA:3.60.21.10 1 254 9.6E-35 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_06360 51fc14846eef97bd21fcfcf086cf3953 264 Pfam PF00149 Calcineurin-like phosphoesterase 3 190 2.9E-16 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_24080 3fb6efbad62a7b3266f4196f0a658d28 181 SUPERFAMILY SSF88946 2 109 1.41E-24 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_24080 3fb6efbad62a7b3266f4196f0a658d28 181 Gene3D G3DSA:1.10.10.10 93 181 1.3E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_24080 3fb6efbad62a7b3266f4196f0a658d28 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 180 2.6E-26 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_24080 3fb6efbad62a7b3266f4196f0a658d28 181 Pfam PF08281 Sigma-70, region 4 124 176 2.2E-12 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_24080 3fb6efbad62a7b3266f4196f0a658d28 181 SUPERFAMILY SSF88659 116 180 1.31E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_24080 3fb6efbad62a7b3266f4196f0a658d28 181 Gene3D G3DSA:1.10.1740.10 6 89 6.4E-28 T 11-10-2018 APT56_24080 3fb6efbad62a7b3266f4196f0a658d28 181 Pfam PF04542 Sigma-70 region 2 25 90 3.8E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_03935 8bd953430771fa55ffe34437f664c405 402 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 4 397 1.8E-116 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 APT56_03935 8bd953430771fa55ffe34437f664c405 402 Pfam PF03616 Sodium/glutamate symporter 3 366 2.4E-110 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 APT56_03935 8bd953430771fa55ffe34437f664c405 402 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 20.99 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 APT56_18030 d6532e553bd43adb22d4c4fc5da5ee6c 346 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 177 2.7E-29 T 11-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase APT56_23660 9b73e8c9737727af59b66c5713808eb7 213 Pfam PF00510 Cytochrome c oxidase subunit III 27 210 1.8E-14 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23660 9b73e8c9737727af59b66c5713808eb7 213 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 33 212 4.8E-83 T 11-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 APT56_23660 9b73e8c9737727af59b66c5713808eb7 213 Gene3D G3DSA:1.20.120.80 27 212 1.3E-55 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23660 9b73e8c9737727af59b66c5713808eb7 213 SUPERFAMILY SSF81452 18 210 8.11E-59 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_00145 37c54f29c5154fec74113092f1360eae 271 Gene3D G3DSA:3.40.630.30 5 264 3.5E-29 T 11-10-2018 APT56_00145 37c54f29c5154fec74113092f1360eae 271 Pfam PF00583 Acetyltransferase (GNAT) family 190 254 1.6E-11 T 11-10-2018 IPR000182 GNAT domain APT56_00145 37c54f29c5154fec74113092f1360eae 271 SUPERFAMILY SSF55729 101 258 3.54E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_04445 83d9fd42867573cdf5304b3a78410a1e 328 Pfam PF03601 Conserved hypothetical protein 698 2 308 2.6E-90 T 11-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 APT56_04445 83d9fd42867573cdf5304b3a78410a1e 328 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 5 324 3.8E-79 T 11-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 APT56_22070 f3a8ae838b8a642e947e8c019a60654f 398 Gene3D G3DSA:3.30.1540.10 234 325 1.7E-135 T 11-10-2018 APT56_22070 f3a8ae838b8a642e947e8c019a60654f 398 Pfam PF02515 CoA-transferase family III 4 374 2.9E-119 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_22070 f3a8ae838b8a642e947e8c019a60654f 398 SUPERFAMILY SSF89796 1 398 5.49E-135 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_22070 f3a8ae838b8a642e947e8c019a60654f 398 Gene3D G3DSA:3.40.50.10540 3 392 1.7E-135 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_07365 41aeb279ebd4e0c379e75ca72eed69b5 561 Gene3D G3DSA:2.40.160.50 184 561 7.4E-97 T 11-10-2018 APT56_07365 41aeb279ebd4e0c379e75ca72eed69b5 561 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 212 524 7.4E-99 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal APT56_07365 41aeb279ebd4e0c379e75ca72eed69b5 561 Pfam PF08479 POTRA domain, ShlB-type 76 151 2.3E-16 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type APT56_07365 41aeb279ebd4e0c379e75ca72eed69b5 561 PIRSF PIRSF029745 4 561 6.5E-142 T 11-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 APT56_07365 41aeb279ebd4e0c379e75ca72eed69b5 561 Pfam PF17287 POTRA domain 152 206 8.0E-19 T 11-10-2018 IPR035251 ShlB, POTRA domain APT56_07365 41aeb279ebd4e0c379e75ca72eed69b5 561 Gene3D G3DSA:3.10.20.310 64 151 9.6E-6 T 11-10-2018 APT56_06855 2c15d9c9fa4acec889df7e7f827cd54b 305 SUPERFAMILY SSF46785 2 80 7.07E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_06855 2c15d9c9fa4acec889df7e7f827cd54b 305 Gene3D G3DSA:3.40.190.290 93 295 2.4E-33 T 11-10-2018 APT56_06855 2c15d9c9fa4acec889df7e7f827cd54b 305 SUPERFAMILY SSF53850 92 297 6.81E-36 T 11-10-2018 APT56_06855 2c15d9c9fa4acec889df7e7f827cd54b 305 Pfam PF03466 LysR substrate binding domain 90 293 1.8E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_06855 2c15d9c9fa4acec889df7e7f827cd54b 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 6.2E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_06855 2c15d9c9fa4acec889df7e7f827cd54b 305 Gene3D G3DSA:1.10.10.10 3 90 6.9E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19030 f29795529f39cbe090111eeb92cdd593 364 Gene3D G3DSA:3.40.190.170 31 350 8.9E-65 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_19030 f29795529f39cbe090111eeb92cdd593 364 SUPERFAMILY SSF53850 137 268 8.09E-7 T 11-10-2018 APT56_19030 f29795529f39cbe090111eeb92cdd593 364 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 56 316 4.4E-32 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 Gene3D G3DSA:3.20.70.20 4 579 1.9E-137 T 11-10-2018 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 SUPERFAMILY SSF51998 3 580 5.49E-125 T 11-10-2018 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 22 571 1.1E-131 T 11-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 PRINTS PR01183 Ribonucleotide reductase large chain signature 376 399 1.1E-21 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 PRINTS PR01183 Ribonucleotide reductase large chain signature 310 333 1.1E-21 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 PRINTS PR01183 Ribonucleotide reductase large chain signature 348 370 1.1E-21 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 460 1.1E-21 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 PRINTS PR01183 Ribonucleotide reductase large chain signature 150 169 1.1E-21 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_13850 979cf4d1964462eeca262d9fdf0eb6bf 592 Pfam PF02867 Ribonucleotide reductase, barrel domain 96 565 2.8E-95 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APT56_14485 f32aa77049b59ceca4e5647b2daa5abe 387 Gene3D G3DSA:3.60.21.10 159 344 6.0E-21 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_14485 f32aa77049b59ceca4e5647b2daa5abe 387 Pfam PF00149 Calcineurin-like phosphoesterase 160 263 1.1E-9 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_14485 f32aa77049b59ceca4e5647b2daa5abe 387 SUPERFAMILY SSF56300 160 385 3.36E-40 T 11-10-2018 APT56_13395 3e6888b2bee0cf753b2ce4850991cded 617 Gene3D G3DSA:1.10.510.40 388 595 6.0E-77 T 11-10-2018 APT56_13395 3e6888b2bee0cf753b2ce4850991cded 617 Pfam PF04183 IucA / IucC family 149 399 3.1E-74 T 11-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 APT56_13395 3e6888b2bee0cf753b2ce4850991cded 617 Gene3D G3DSA:1.10.274.90 1 139 3.9E-53 T 11-10-2018 APT56_13395 3e6888b2bee0cf753b2ce4850991cded 617 Pfam PF06276 Ferric iron reductase FhuF-like transporter 421 576 1.7E-39 T 11-10-2018 IPR022770 Ferric iron reductase FhuF domain APT56_07945 fe61c2df99f125caf6d913f0e2b03aeb 327 SUPERFAMILY SSF53850 112 288 2.21E-10 T 11-10-2018 APT56_07945 fe61c2df99f125caf6d913f0e2b03aeb 327 PIRSF PIRSF017082 1 325 2.3E-76 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_07945 fe61c2df99f125caf6d913f0e2b03aeb 327 Gene3D G3DSA:3.40.190.10 126 249 2.9E-103 T 11-10-2018 APT56_07945 fe61c2df99f125caf6d913f0e2b03aeb 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 321 2.9E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_07945 fe61c2df99f125caf6d913f0e2b03aeb 327 Gene3D G3DSA:3.40.190.150 28 315 2.9E-103 T 11-10-2018 APT56_06755 9e98e89f1e6857bbff06dfe923d26df9 236 Gene3D G3DSA:3.30.950.10 122 236 5.3E-44 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 APT56_06755 9e98e89f1e6857bbff06dfe923d26df9 236 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 214 9.0E-10 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 APT56_06755 9e98e89f1e6857bbff06dfe923d26df9 236 SUPERFAMILY SSF53790 3 232 2.09E-64 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 APT56_06755 9e98e89f1e6857bbff06dfe923d26df9 236 Gene3D G3DSA:3.40.1010.10 2 121 7.2E-38 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 APT56_06755 9e98e89f1e6857bbff06dfe923d26df9 236 PIRSF PIRSF005917 1 232 4.5E-46 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 APT56_13135 aca0ffc188b1826716272217346b5c16 295 Gene3D G3DSA:3.40.50.1820 16 295 6.3E-85 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_13135 aca0ffc188b1826716272217346b5c16 295 SUPERFAMILY SSF53474 16 295 4.21E-64 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_13135 aca0ffc188b1826716272217346b5c16 295 PRINTS PR00412 Epoxide hydrolase signature 107 120 1.7E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_13135 aca0ffc188b1826716272217346b5c16 295 PRINTS PR00412 Epoxide hydrolase signature 271 293 1.7E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_13135 aca0ffc188b1826716272217346b5c16 295 PRINTS PR00412 Epoxide hydrolase signature 44 62 1.7E-9 T 11-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 APT56_13135 aca0ffc188b1826716272217346b5c16 295 Pfam PF12697 Alpha/beta hydrolase family 40 288 1.7E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_09505 c0bbd61c8add189131db5e4c335a3ee5 384 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 6 362 71.819 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 APT56_09505 c0bbd61c8add189131db5e4c335a3ee5 384 Gene3D G3DSA:3.20.20.70 69 347 1.1E-105 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_09505 c0bbd61c8add189131db5e4c335a3ee5 384 Gene3D G3DSA:1.10.150.530 6 67 4.4E-20 T 11-10-2018 APT56_09505 c0bbd61c8add189131db5e4c335a3ee5 384 PIRSF PIRSF006004 4 375 7.0E-143 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 APT56_09505 c0bbd61c8add189131db5e4c335a3ee5 384 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 5 367 4.9E-132 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 APT56_09505 c0bbd61c8add189131db5e4c335a3ee5 384 Pfam PF04055 Radical SAM superfamily 110 290 7.2E-15 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_09505 c0bbd61c8add189131db5e4c335a3ee5 384 SUPERFAMILY SSF102114 104 331 1.19E-12 T 11-10-2018 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 SUPERFAMILY SSF52172 14 140 9.39E-38 T 11-10-2018 IPR011006 CheY-like superfamily APT56_17190 19ac481279275d2613fad9b4ceba444f 273 Pfam PF00072 Response regulator receiver domain 21 131 1.4E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 Pfam PF12833 Helix-turn-helix domain 189 267 1.2E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 SUPERFAMILY SSF46689 220 268 3.85E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 220 262 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 Gene3D G3DSA:1.10.10.60 163 272 6.0E-26 T 11-10-2018 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 Gene3D G3DSA:3.40.50.2300 15 139 5.0E-35 T 11-10-2018 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 SMART SM00448 19 132 1.1E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 SUPERFAMILY SSF46689 167 217 8.96E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_17190 19ac481279275d2613fad9b4ceba444f 273 SMART SM00342 183 266 2.2E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_09610 7e8e930102189a0b0e5829305ab0be56 306 Gene3D G3DSA:3.40.50.2000 142 296 3.8E-17 T 11-10-2018 APT56_09610 7e8e930102189a0b0e5829305ab0be56 306 SUPERFAMILY SSF53756 12 279 1.22E-24 T 11-10-2018 APT56_09610 7e8e930102189a0b0e5829305ab0be56 306 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 149 265 1.5E-6 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APT56_01065 0493bf7fa5bfefb65a9cb3b743b04cac 297 Pfam PF00892 EamA-like transporter family 149 286 9.7E-11 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_01065 0493bf7fa5bfefb65a9cb3b743b04cac 297 Pfam PF00892 EamA-like transporter family 4 134 7.4E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_01065 0493bf7fa5bfefb65a9cb3b743b04cac 297 SUPERFAMILY SSF103481 186 288 3.4E-8 T 11-10-2018 APT56_01065 0493bf7fa5bfefb65a9cb3b743b04cac 297 SUPERFAMILY SSF103481 35 138 2.62E-14 T 11-10-2018 APT56_19145 47efe61d066c1a868d4c8b568bc46478 237 Gene3D G3DSA:3.30.1150.10 134 228 1.1E-5 T 11-10-2018 APT56_19145 47efe61d066c1a868d4c8b568bc46478 237 Pfam PF13103 TonB C terminal 150 212 2.2E-6 T 11-10-2018 APT56_19145 47efe61d066c1a868d4c8b568bc46478 237 SUPERFAMILY SSF74653 60 221 1.2E-6 T 11-10-2018 APT56_10635 435836b510b7c7fdd8baa06e16813277 299 SUPERFAMILY SSF69593 42 240 2.75E-24 T 11-10-2018 APT56_10635 435836b510b7c7fdd8baa06e16813277 299 SMART SM00563 97 205 1.6E-18 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APT56_10635 435836b510b7c7fdd8baa06e16813277 299 Pfam PF01553 Acyltransferase 87 202 2.5E-12 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APT56_07870 4803b7a411b7afcd0dc036dcf4fb552e 408 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 266 381 1.8E-30 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT56_07870 4803b7a411b7afcd0dc036dcf4fb552e 408 Gene3D G3DSA:3.40.50.300 12 239 1.5E-72 T 11-10-2018 APT56_07870 4803b7a411b7afcd0dc036dcf4fb552e 408 SMART SM00833 266 381 3.3E-53 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal APT56_07870 4803b7a411b7afcd0dc036dcf4fb552e 408 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 15 220 4.8E-59 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APT56_07870 4803b7a411b7afcd0dc036dcf4fb552e 408 SUPERFAMILY SSF52540 11 312 5.22E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_25815 55b8539f0638b4f4d12f4bfdfda7ce86 445 SUPERFAMILY SSF51735 14 150 1.46E-23 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_25815 55b8539f0638b4f4d12f4bfdfda7ce86 445 Gene3D G3DSA:3.40.50.720 10 182 1.7E-22 T 11-10-2018 APT56_25815 55b8539f0638b4f4d12f4bfdfda7ce86 445 SMART SM00858 361 426 5.4E-5 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_25815 55b8539f0638b4f4d12f4bfdfda7ce86 445 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 57 133 2.0E-6 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 APT56_22180 08cc8d6bfbfe5975db369436963527f5 475 SUPERFAMILY SSF47240 107 332 2.92E-48 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_22180 08cc8d6bfbfe5975db369436963527f5 475 TIGRFAM TIGR03225 benzo_boxB: benzoyl-CoA oxygenase, B subunit 4 474 7.0E-270 T 11-10-2018 IPR017635 Benzoyl-CoA oxygenase, B subunit KEGG: 00362+1.14.13.208|MetaCyc: PWY-1361 APT56_22180 08cc8d6bfbfe5975db369436963527f5 475 Gene3D G3DSA:1.10.620.20 3 475 1.3E-233 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 APT56_19245 4c30504763cd6c6e912a31a723d19164 567 Pfam PF02538 Hydantoinase B/oxoprolinase 12 534 1.4E-138 T 11-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_00175 0bc046f558eb4a8ee705e660b3edbee1 388 Pfam PF00155 Aminotransferase class I and II 26 385 3.9E-58 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_00175 0bc046f558eb4a8ee705e660b3edbee1 388 SUPERFAMILY SSF53383 3 388 1.6E-100 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_00175 0bc046f558eb4a8ee705e660b3edbee1 388 Gene3D G3DSA:3.90.1150.10 12 381 1.2E-133 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_00175 0bc046f558eb4a8ee705e660b3edbee1 388 Gene3D G3DSA:3.40.640.10 40 282 1.2E-133 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_12915 9aa272df334e5727277203d1fe684501 227 SUPERFAMILY SSF103501 1 226 5.89E-66 T 11-10-2018 IPR036197 NarG-like superfamily APT56_12915 9aa272df334e5727277203d1fe684501 227 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 2 227 1.5E-75 T 11-10-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 APT56_12915 9aa272df334e5727277203d1fe684501 227 Pfam PF02665 Nitrate reductase gamma subunit 5 227 2.5E-80 T 11-10-2018 IPR023234 NarG-like domain APT56_12915 9aa272df334e5727277203d1fe684501 227 Gene3D G3DSA:1.20.950.20 1 219 1.7E-74 T 11-10-2018 APT56_26165 4d6db2e9adb1d4f721c0f3edacd3163c 202 PIRSF PIRSF006324 1 201 2.8E-56 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_26165 4d6db2e9adb1d4f721c0f3edacd3163c 202 Pfam PF01810 LysE type translocator 16 199 5.1E-34 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_15345 81b6a8f711333ca03ff814234b94c1c6 130 Pfam PF10861 Protein of Unknown function (DUF2784) 4 111 3.8E-35 T 11-10-2018 IPR021218 Protein of unknown function DUF2784 APT56_12890 eaca9da53dc5c2d5732a194dd5e93458 419 SUPERFAMILY SSF103473 8 408 4.19E-59 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_12890 eaca9da53dc5c2d5732a194dd5e93458 419 Gene3D G3DSA:1.20.1250.20 4 190 1.2E-47 T 11-10-2018 APT56_12890 eaca9da53dc5c2d5732a194dd5e93458 419 Pfam PF07690 Major Facilitator Superfamily 21 297 2.1E-33 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_12890 eaca9da53dc5c2d5732a194dd5e93458 419 Gene3D G3DSA:1.20.1250.20 197 417 9.3E-50 T 11-10-2018 APT56_27520 8e9997d13f4df59b7f293d5ebb89aae3 205 Gene3D G3DSA:1.10.10.60 2 50 8.7E-13 T 11-10-2018 APT56_27520 8e9997d13f4df59b7f293d5ebb89aae3 205 SUPERFAMILY SSF48498 81 195 1.78E-27 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_27520 8e9997d13f4df59b7f293d5ebb89aae3 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.8E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_27520 8e9997d13f4df59b7f293d5ebb89aae3 205 Gene3D G3DSA:1.10.357.10 52 197 9.4E-36 T 11-10-2018 APT56_27520 8e9997d13f4df59b7f293d5ebb89aae3 205 SUPERFAMILY SSF46689 5 73 1.03E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_05050 df30cb302da8122a0bbb92f21a03beb6 307 SUPERFAMILY SSF53613 2 305 7.64E-79 T 11-10-2018 IPR029056 Ribokinase-like APT56_05050 df30cb302da8122a0bbb92f21a03beb6 307 Pfam PF00294 pfkB family carbohydrate kinase 5 296 8.0E-56 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APT56_05050 df30cb302da8122a0bbb92f21a03beb6 307 Gene3D G3DSA:3.40.1190.20 4 306 4.1E-84 T 11-10-2018 IPR029056 Ribokinase-like APT56_11700 0fde0ab8e00f277b93c9759395d7798d 268 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 91 254 4.2E-7 T 11-10-2018 APT56_11700 0fde0ab8e00f277b93c9759395d7798d 268 Gene3D G3DSA:2.60.120.200 30 257 1.7E-16 T 11-10-2018 APT56_11700 0fde0ab8e00f277b93c9759395d7798d 268 SUPERFAMILY SSF49899 30 260 3.34E-17 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily APT56_01205 2f43c229041ce1f535c985af70f95d21 246 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 240 36.247 T 11-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 APT56_01205 2f43c229041ce1f535c985af70f95d21 246 Gene3D G3DSA:3.20.20.70 1 242 1.5E-86 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_01205 2f43c229041ce1f535c985af70f95d21 246 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 236 8.7E-77 T 11-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 APT56_01205 2f43c229041ce1f535c985af70f95d21 246 Pfam PF00977 Histidine biosynthesis protein 3 232 1.2E-78 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 APT56_01205 2f43c229041ce1f535c985af70f95d21 246 SUPERFAMILY SSF51366 1 238 2.12E-74 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_15940 c11945ae885d89812b28cbbde421da95 339 Pfam PF00691 OmpA family 191 289 2.8E-20 T 11-10-2018 IPR006665 OmpA-like domain APT56_15940 c11945ae885d89812b28cbbde421da95 339 Gene3D G3DSA:3.30.1330.60 147 301 4.4E-47 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_15940 c11945ae885d89812b28cbbde421da95 339 SUPERFAMILY SSF103088 180 295 7.59E-31 T 11-10-2018 IPR036737 OmpA-like domain superfamily APT56_15940 c11945ae885d89812b28cbbde421da95 339 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 54 81 1.6E-6 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 231 453 4.6E-73 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 Gene3D G3DSA:3.40.50.720 9 295 9.4E-103 T 11-10-2018 APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 Gene3D G3DSA:1.10.1040.10 297 514 5.8E-66 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 SUPERFAMILY SSF48179 299 511 2.38E-54 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 36 201 1.3E-29 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 SUPERFAMILY SSF51735 12 295 1.22E-93 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 PRINTS PR00084 Mannitol dehydrogenase signature 193 206 2.1E-15 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 PRINTS PR00084 Mannitol dehydrogenase signature 232 245 2.1E-15 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 PRINTS PR00084 Mannitol dehydrogenase signature 37 47 2.1E-15 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT56_02740 9b16fa3e2c7af9624cec3ff5c70210f6 520 PRINTS PR00084 Mannitol dehydrogenase signature 262 277 2.1E-15 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APT56_14565 08916069e127bd04f2d195f20c7f3cfe 498 Gene3D G3DSA:3.20.20.140 67 421 1.1E-179 T 11-10-2018 APT56_14565 08916069e127bd04f2d195f20c7f3cfe 498 Pfam PF07969 Amidohydrolase family 57 470 8.3E-36 T 11-10-2018 IPR013108 Amidohydrolase 3 APT56_14565 08916069e127bd04f2d195f20c7f3cfe 498 Gene3D G3DSA:3.30.1490.130 295 351 1.1E-179 T 11-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 APT56_14565 08916069e127bd04f2d195f20c7f3cfe 498 Gene3D G3DSA:2.30.40.10 15 470 1.1E-179 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_14565 08916069e127bd04f2d195f20c7f3cfe 498 SUPERFAMILY SSF51556 68 426 6.43E-84 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_14565 08916069e127bd04f2d195f20c7f3cfe 498 SUPERFAMILY SSF51338 15 484 8.33E-20 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_15810 d9d74d93d3a3b53b07e1166c300b517b 188 SMART SM01012 105 160 7.0E-12 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 APT56_15810 d9d74d93d3a3b53b07e1166c300b517b 188 Gene3D G3DSA:3.40.50.2300 1 97 6.2E-31 T 11-10-2018 APT56_15810 d9d74d93d3a3b53b07e1166c300b517b 188 Pfam PF03861 ANTAR domain 108 160 1.9E-12 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 APT56_15810 d9d74d93d3a3b53b07e1166c300b517b 188 SUPERFAMILY SSF52172 1 160 6.33E-30 T 11-10-2018 IPR011006 CheY-like superfamily APT56_15810 d9d74d93d3a3b53b07e1166c300b517b 188 PIRSF PIRSF036382 1 167 2.5E-26 T 11-10-2018 IPR008327 Signal transduction response regulator, antiterminator APT56_15810 d9d74d93d3a3b53b07e1166c300b517b 188 Gene3D G3DSA:1.10.10.10 107 168 2.0E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08085 37a6aa8a4b6745f02c3d8ef2c4e71aea 107 Hamap MF_00720 Primosomal replication protein N [priB]. 1 96 22.668 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 APT56_08085 37a6aa8a4b6745f02c3d8ef2c4e71aea 107 Gene3D G3DSA:2.40.50.140 1 107 3.8E-37 T 11-10-2018 APT56_08085 37a6aa8a4b6745f02c3d8ef2c4e71aea 107 SUPERFAMILY SSF50249 1 97 2.06E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_08085 37a6aa8a4b6745f02c3d8ef2c4e71aea 107 PIRSF PIRSF003135 1 97 2.3E-13 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 APT56_08085 37a6aa8a4b6745f02c3d8ef2c4e71aea 107 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 2 95 7.3E-30 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 APT56_20490 a98523aed8ef6372bd481aa732f336c3 208 Gene3D G3DSA:3.90.870.10 2 204 1.4E-57 T 11-10-2018 APT56_20490 a98523aed8ef6372bd481aa732f336c3 208 SUPERFAMILY SSF55821 1 202 3.05E-58 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APT56_20490 a98523aed8ef6372bd481aa732f336c3 208 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 1.2E-53 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 APT56_20490 a98523aed8ef6372bd481aa732f336c3 208 Pfam PF01300 Telomere recombination 23 198 1.7E-39 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 APT56_27215 bbf51b7068ce9cb49571c57c5de9631b 240 SMART SM00382 32 213 1.6E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_27215 bbf51b7068ce9cb49571c57c5de9631b 240 Pfam PF00005 ABC transporter 23 164 2.4E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27215 bbf51b7068ce9cb49571c57c5de9631b 240 Gene3D G3DSA:3.40.50.300 1 237 2.3E-54 T 11-10-2018 APT56_27215 bbf51b7068ce9cb49571c57c5de9631b 240 SUPERFAMILY SSF52540 5 219 4.92E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_11145 4e5d1d18249fdce27950eb5f71e59fea 264 Gene3D G3DSA:3.90.226.10 12 261 2.4E-60 T 11-10-2018 APT56_11145 4e5d1d18249fdce27950eb5f71e59fea 264 SUPERFAMILY SSF52096 8 259 1.48E-60 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_11145 4e5d1d18249fdce27950eb5f71e59fea 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 254 7.6E-28 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_25170 ca6fdae263664abf0ce59708d1e01f99 351 SUPERFAMILY SSF102114 99 310 3.4E-12 T 11-10-2018 APT56_25170 ca6fdae263664abf0ce59708d1e01f99 351 PIRSF PIRSF006004 1 349 6.5E-91 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 APT56_25170 ca6fdae263664abf0ce59708d1e01f99 351 Gene3D G3DSA:3.20.20.70 65 318 4.5E-65 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_25170 ca6fdae263664abf0ce59708d1e01f99 351 Pfam PF04055 Radical SAM superfamily 101 260 3.8E-9 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_12335 eace2a139884ad014a18719b0e51da20 275 Pfam PF03618 Kinase/pyrophosphorylase 10 267 6.2E-79 T 11-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 APT56_12335 eace2a139884ad014a18719b0e51da20 275 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 7 275 74.457 T 11-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein APT56_19300 15749424bc0de5e2ec1c00884221cd85 403 SMART SM00267 206 377 6.0E-39 T 11-10-2018 IPR000160 GGDEF domain APT56_19300 15749424bc0de5e2ec1c00884221cd85 403 SUPERFAMILY SSF55073 222 375 1.26E-38 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_19300 15749424bc0de5e2ec1c00884221cd85 403 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 215 375 1.5E-34 T 11-10-2018 IPR000160 GGDEF domain APT56_19300 15749424bc0de5e2ec1c00884221cd85 403 Gene3D G3DSA:3.30.70.270 206 378 6.3E-45 T 11-10-2018 APT56_19300 15749424bc0de5e2ec1c00884221cd85 403 Pfam PF00990 Diguanylate cyclase, GGDEF domain 217 372 4.7E-34 T 11-10-2018 IPR000160 GGDEF domain APT56_24385 105346b12243fe0e0eda00ac22b2dc37 271 SUPERFAMILY SSF46785 18 92 2.08E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_24385 105346b12243fe0e0eda00ac22b2dc37 271 SUPERFAMILY SSF55781 76 270 1.18E-35 T 11-10-2018 APT56_24385 105346b12243fe0e0eda00ac22b2dc37 271 Pfam PF01614 Bacterial transcriptional regulator 137 265 7.3E-11 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_24385 105346b12243fe0e0eda00ac22b2dc37 271 Pfam PF09339 IclR helix-turn-helix domain 20 70 5.3E-9 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_24385 105346b12243fe0e0eda00ac22b2dc37 271 Gene3D G3DSA:3.30.450.40 96 266 6.9E-32 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_24385 105346b12243fe0e0eda00ac22b2dc37 271 SMART SM00346 18 108 8.9E-11 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_24385 105346b12243fe0e0eda00ac22b2dc37 271 Gene3D G3DSA:1.10.10.10 16 93 2.0E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_01845 1bc1fed4d52b62a026a14b98efe45beb 268 Gene3D G3DSA:3.40.190.10 33 263 1.5E-91 T 11-10-2018 APT56_01845 1bc1fed4d52b62a026a14b98efe45beb 268 Gene3D G3DSA:3.40.190.10 112 219 1.5E-91 T 11-10-2018 APT56_01845 1bc1fed4d52b62a026a14b98efe45beb 268 PIRSF PIRSF002854 1 268 1.4E-97 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_01845 1bc1fed4d52b62a026a14b98efe45beb 268 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 266 4.1E-72 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_01845 1bc1fed4d52b62a026a14b98efe45beb 268 Pfam PF03180 NLPA lipoprotein 31 268 3.1E-85 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_01845 1bc1fed4d52b62a026a14b98efe45beb 268 SUPERFAMILY SSF53850 30 268 5.23E-79 T 11-10-2018 APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 306 4.3E-82 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 SUPERFAMILY SSF55021 409 502 2.27E-28 T 11-10-2018 APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 414 502 3.1E-23 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 319 408 2.8E-27 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 Gene3D G3DSA:3.40.50.1100 50 146 3.6E-139 T 11-10-2018 APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 SUPERFAMILY SSF53686 5 355 4.58E-102 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 4 502 9.2E-254 T 11-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 Gene3D G3DSA:3.40.1020.10 328 502 3.7E-75 T 11-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APT56_26575 eb0ccee5bb1533d00157a6639e07fd8e 502 Gene3D G3DSA:3.40.50.1100 14 317 3.6E-139 T 11-10-2018 APT56_16000 52a1f65b27c11cc7f90fe1cd2983bc69 142 Gene3D G3DSA:3.40.630.30 1 138 1.8E-30 T 11-10-2018 APT56_16000 52a1f65b27c11cc7f90fe1cd2983bc69 142 Pfam PF00583 Acetyltransferase (GNAT) family 40 129 1.4E-15 T 11-10-2018 IPR000182 GNAT domain APT56_16000 52a1f65b27c11cc7f90fe1cd2983bc69 142 SUPERFAMILY SSF55729 1 135 9.29E-30 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 Pfam PF00106 short chain dehydrogenase 8 191 3.3E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.3E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 8.3E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 8.3E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 8.3E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 8.3E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 8.3E-28 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 SUPERFAMILY SSF51735 1 234 4.38E-67 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 8.0E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 8.0E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 2.4E-4 T 11-10-2018 APT56_26295 df5d5b8279cf3a387c3df360c94c1024 294 Gene3D G3DSA:3.40.50.720 7 284 3.9E-71 T 11-10-2018 APT56_09575 bf290955e65b0e9eb2cadd19c9486c5b 180 Pfam PF00156 Phosphoribosyl transferase domain 16 161 1.5E-24 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT56_09575 bf290955e65b0e9eb2cadd19c9486c5b 180 Gene3D G3DSA:3.40.50.2020 9 177 2.9E-33 T 11-10-2018 APT56_09575 bf290955e65b0e9eb2cadd19c9486c5b 180 SUPERFAMILY SSF53271 6 176 4.85E-35 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APT56_27565 27d9ca51ba81cbc7402e7d1dcc135e30 220 Gene3D G3DSA:3.40.30.10 4 200 1.1E-62 T 11-10-2018 APT56_27565 27d9ca51ba81cbc7402e7d1dcc135e30 220 SUPERFAMILY SSF47616 80 202 3.98E-18 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_27565 27d9ca51ba81cbc7402e7d1dcc135e30 220 SUPERFAMILY SSF52833 4 86 4.84E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_27565 27d9ca51ba81cbc7402e7d1dcc135e30 220 Gene3D G3DSA:1.20.1050.10 83 193 1.1E-62 T 11-10-2018 APT56_27565 27d9ca51ba81cbc7402e7d1dcc135e30 220 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 80 9.3E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_03430 bb7c5433f0da8838c73a4354b9d95b81 335 SUPERFAMILY SSF53850 42 286 2.14E-28 T 11-10-2018 APT56_03430 bb7c5433f0da8838c73a4354b9d95b81 335 Pfam PF09084 NMT1/THI5 like 48 258 4.8E-18 T 11-10-2018 IPR015168 SsuA/THI5-like APT56_03430 bb7c5433f0da8838c73a4354b9d95b81 335 Gene3D G3DSA:3.40.190.10 42 309 6.5E-40 T 11-10-2018 APT56_03430 bb7c5433f0da8838c73a4354b9d95b81 335 Gene3D G3DSA:3.40.190.10 117 220 6.5E-40 T 11-10-2018 APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 246 2.8E-61 T 11-10-2018 APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.5E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.5E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 2.5E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 SUPERFAMILY SSF51735 8 246 4.72E-79 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 191 2.1E-4 T 11-10-2018 APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 Gene3D G3DSA:3.40.50.720 1 246 1.1E-78 T 11-10-2018 APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 2.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11160 b993a649a6ebcf13d851fd3affd99e79 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.4E-42 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_20485 8e3cb80a021b7b019c45a4ad8f414d38 215 Pfam PF02163 Peptidase family M50 131 179 1.9E-7 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 APT56_13150 3bcd09068473199cf7b29fae73140bd7 286 Gene3D G3DSA:3.40.190.10 124 218 1.7E-42 T 11-10-2018 APT56_13150 3bcd09068473199cf7b29fae73140bd7 286 SUPERFAMILY SSF53850 31 257 3.63E-40 T 11-10-2018 APT56_13150 3bcd09068473199cf7b29fae73140bd7 286 Gene3D G3DSA:3.40.190.10 27 248 1.7E-42 T 11-10-2018 APT56_13150 3bcd09068473199cf7b29fae73140bd7 286 SMART SM00062 35 260 3.2E-33 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_13150 3bcd09068473199cf7b29fae73140bd7 286 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 251 1.2E-34 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_12125 25eb5f4259ca323976ff471cf070f578 110 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 110 16.805 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 APT56_12125 25eb5f4259ca323976ff471cf070f578 110 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 39 55 1.6E-13 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 APT56_12125 25eb5f4259ca323976ff471cf070f578 110 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 95 108 1.6E-13 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 APT56_12125 25eb5f4259ca323976ff471cf070f578 110 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 74 90 1.6E-13 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 APT56_12125 25eb5f4259ca323976ff471cf070f578 110 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 12 109 5.0E-22 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 APT56_12125 25eb5f4259ca323976ff471cf070f578 110 Pfam PF02049 Flagellar hook-basal body complex protein FliE 26 110 1.0E-26 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 APT56_03890 65adee8342a4588446063b4777118182 259 Pfam PF08241 Methyltransferase domain 80 131 1.6E-8 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 APT56_03890 65adee8342a4588446063b4777118182 259 SUPERFAMILY SSF53335 79 200 3.2E-15 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_03890 65adee8342a4588446063b4777118182 259 Gene3D G3DSA:3.40.50.150 12 192 8.6E-17 T 11-10-2018 APT56_25220 fabd0e5df832490ad3c7aef1d7739f00 266 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 53 265 30.076 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 APT56_25220 fabd0e5df832490ad3c7aef1d7739f00 266 SUPERFAMILY SSF53335 47 264 1.1E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_25220 fabd0e5df832490ad3c7aef1d7739f00 266 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 86 265 3.5E-51 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 APT56_25220 fabd0e5df832490ad3c7aef1d7739f00 266 Pfam PF02390 Putative methyltransferase 93 260 7.3E-53 T 11-10-2018 APT56_25220 fabd0e5df832490ad3c7aef1d7739f00 266 Gene3D G3DSA:3.40.50.150 59 266 1.5E-64 T 11-10-2018 APT56_11470 72f7d4afae0b3fbb4afc8d8bc70f0e8a 127 SUPERFAMILY SSF54637 11 126 3.23E-22 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_11470 72f7d4afae0b3fbb4afc8d8bc70f0e8a 127 Pfam PF03061 Thioesterase superfamily 42 110 8.1E-5 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_11470 72f7d4afae0b3fbb4afc8d8bc70f0e8a 127 Gene3D G3DSA:3.10.129.10 9 127 1.5E-24 T 11-10-2018 APT56_25430 b39d888bc5f2bef30ec074b241150b67 229 Gene3D G3DSA:3.60.21.10 6 224 4.9E-46 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_25430 b39d888bc5f2bef30ec074b241150b67 229 SUPERFAMILY SSF56300 12 221 2.53E-38 T 11-10-2018 APT56_25430 b39d888bc5f2bef30ec074b241150b67 229 Pfam PF00149 Calcineurin-like phosphoesterase 21 194 2.0E-11 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 SUPERFAMILY SSF82114 184 317 1.13E-37 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 21 316 4.1E-86 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 Gene3D G3DSA:2.40.30.30 197 319 7.9E-35 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 SUPERFAMILY SSF52374 20 184 1.16E-30 T 11-10-2018 APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 Gene3D G3DSA:3.40.50.620 8 195 1.8E-57 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 SMART SM00904 192 317 9.6E-52 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 Pfam PF06574 FAD synthetase 16 175 8.7E-49 T 11-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 PIRSF PIRSF004491 5 320 8.6E-94 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 APT56_17985 955dc0d122527692b8a21ba7111ec4cf 321 Pfam PF01687 Riboflavin kinase 193 316 4.5E-33 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 APT56_03670 8e881b6e8b788d8587d166a5ba77fef3 119 Gene3D G3DSA:1.25.40.10 2 116 1.0E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_03670 8e881b6e8b788d8587d166a5ba77fef3 119 SUPERFAMILY SSF48452 4 108 1.52E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 PRINTS PR00813 Bacterial general secretion pathway protein G signature 49 67 1.1E-16 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 PRINTS PR00813 Bacterial general secretion pathway protein G signature 13 38 1.1E-16 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 33 3.7E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 12 141 1.8E-53 T 11-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 SUPERFAMILY SSF54523 40 141 2.15E-36 T 11-10-2018 APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 33 3.0E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 Gene3D G3DSA:3.30.700.10 36 140 2.8E-37 T 11-10-2018 APT56_11685 ba8662984b45a6aff913e7c824b3fa59 142 Pfam PF08334 Type II secretion system (T2SS), protein G 36 140 9.4E-42 T 11-10-2018 IPR013545 Type II secretion system protein G APT56_19895 96d3d08331afcac120d7d0bbca28edc3 350 Gene3D G3DSA:3.40.50.720 6 281 2.7E-130 T 11-10-2018 APT56_19895 96d3d08331afcac120d7d0bbca28edc3 350 Pfam PF16363 GDP-mannose 4,6 dehydratase 7 331 1.3E-53 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_19895 96d3d08331afcac120d7d0bbca28edc3 350 Gene3D G3DSA:3.90.25.10 201 336 2.7E-130 T 11-10-2018 APT56_19895 96d3d08331afcac120d7d0bbca28edc3 350 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 5 342 1.3E-122 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APT56_19895 96d3d08331afcac120d7d0bbca28edc3 350 SUPERFAMILY SSF51735 1 343 2.82E-88 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_07825 d604a574e317b56ef2aaa81b22728640 225 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 174 179 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site APT56_07825 d604a574e317b56ef2aaa81b22728640 225 TIGRFAM TIGR00608 radc: DNA repair protein RadC 12 223 1.3E-65 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 APT56_07825 d604a574e317b56ef2aaa81b22728640 225 Gene3D G3DSA:1.10.150.20 29 88 2.5E-6 T 11-10-2018 APT56_07825 d604a574e317b56ef2aaa81b22728640 225 Gene3D G3DSA:3.40.140.10 101 224 2.6E-38 T 11-10-2018 APT56_07825 d604a574e317b56ef2aaa81b22728640 225 SUPERFAMILY SSF102712 151 201 1.96E-5 T 11-10-2018 APT56_07825 d604a574e317b56ef2aaa81b22728640 225 SUPERFAMILY SSF47781 16 90 4.45E-12 T 11-10-2018 IPR010994 RuvA domain 2-like APT56_07825 d604a574e317b56ef2aaa81b22728640 225 Pfam PF04002 RadC-like JAB domain 105 222 1.9E-40 T 11-10-2018 IPR025657 RadC-like JAB domain APT56_17460 075e5f8b2553aa90b635f8da984159d7 243 Gene3D G3DSA:3.40.50.720 2 241 5.7E-41 T 11-10-2018 APT56_17460 075e5f8b2553aa90b635f8da984159d7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 176 9.4E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17460 075e5f8b2553aa90b635f8da984159d7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 9.4E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17460 075e5f8b2553aa90b635f8da984159d7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 9.4E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17460 075e5f8b2553aa90b635f8da984159d7 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 9.4E-12 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17460 075e5f8b2553aa90b635f8da984159d7 243 SUPERFAMILY SSF51735 3 209 5.15E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_17460 075e5f8b2553aa90b635f8da984159d7 243 Pfam PF00106 short chain dehydrogenase 4 84 8.0E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_17195 27811b7980230e8320ff773fb11b2c7f 558 Pfam PF08479 POTRA domain, ShlB-type 70 145 4.6E-18 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type APT56_17195 27811b7980230e8320ff773fb11b2c7f 558 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 208 519 2.3E-28 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal APT56_17195 27811b7980230e8320ff773fb11b2c7f 558 Gene3D G3DSA:2.40.160.50 179 558 2.0E-77 T 11-10-2018 APT56_17195 27811b7980230e8320ff773fb11b2c7f 558 Gene3D G3DSA:3.10.20.310 60 145 1.9E-14 T 11-10-2018 APT56_05730 2570de7c9bfb6ffce9d7590eb6488c4a 228 Pfam PF01713 Smr domain 140 221 1.2E-24 T 11-10-2018 IPR002625 Smr domain APT56_05730 2570de7c9bfb6ffce9d7590eb6488c4a 228 SUPERFAMILY SSF160443 138 221 1.44E-17 T 11-10-2018 IPR036063 Smr domain superfamily APT56_05730 2570de7c9bfb6ffce9d7590eb6488c4a 228 SMART SM00463 137 221 2.1E-15 T 11-10-2018 IPR002625 Smr domain APT56_05730 2570de7c9bfb6ffce9d7590eb6488c4a 228 Gene3D G3DSA:3.30.1370.110 100 225 3.3E-39 T 11-10-2018 APT56_16825 60710413ee44f492e720f08ba2228f6d 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 2.4E-42 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_16825 60710413ee44f492e720f08ba2228f6d 324 Gene3D G3DSA:1.10.3720.10 83 315 3.3E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16825 60710413ee44f492e720f08ba2228f6d 324 SUPERFAMILY SSF161098 90 306 1.7E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18675 a12b2127bf0dd52ec92224684f00b77f 201 SUPERFAMILY SSF53335 81 180 3.86E-11 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_18675 a12b2127bf0dd52ec92224684f00b77f 201 Gene3D G3DSA:3.40.50.150 10 164 1.8E-8 T 11-10-2018 APT56_08365 aec05143c13493d9996a1083ebdf3543 568 Pfam PF02562 PhoH-like protein 354 556 1.2E-52 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 APT56_08365 aec05143c13493d9996a1083ebdf3543 568 Pfam PF13638 PIN domain 114 258 8.8E-40 T 11-10-2018 IPR002716 PIN domain APT56_08365 aec05143c13493d9996a1083ebdf3543 568 Gene3D G3DSA:3.40.50.300 352 565 3.6E-64 T 11-10-2018 APT56_08365 aec05143c13493d9996a1083ebdf3543 568 Gene3D G3DSA:3.40.50.1010 109 261 5.3E-24 T 11-10-2018 APT56_08365 aec05143c13493d9996a1083ebdf3543 568 SUPERFAMILY SSF88723 112 260 2.35E-11 T 11-10-2018 IPR029060 PIN-like domain superfamily APT56_08365 aec05143c13493d9996a1083ebdf3543 568 SMART SM00670 112 246 8.8E-13 T 11-10-2018 IPR002716 PIN domain APT56_08365 aec05143c13493d9996a1083ebdf3543 568 SUPERFAMILY SSF52540 234 546 1.8E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02505 bf0997aa51fceb20dc5283aa4ba1bf43 93 Gene3D G3DSA:3.90.1210.30 4 92 6.4E-24 T 11-10-2018 APT56_02505 bf0997aa51fceb20dc5283aa4ba1bf43 93 SMART SM00858 11 89 4.2E-10 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_02505 bf0997aa51fceb20dc5283aa4ba1bf43 93 Pfam PF08666 SAF domain 11 89 1.8E-5 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_00170 6c770fe4f9864d367acafe41e6cfdb59 344 PIRSF PIRSF038991 2 344 3.4E-82 T 11-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 APT56_00170 6c770fe4f9864d367acafe41e6cfdb59 344 Pfam PF05145 Transition state regulatory protein AbrB 28 336 1.5E-84 T 11-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 APT56_00170 6c770fe4f9864d367acafe41e6cfdb59 344 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 181 335 4.9E-35 T 11-10-2018 IPR017516 AbrB duplication APT56_00170 6c770fe4f9864d367acafe41e6cfdb59 344 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 9 160 4.7E-36 T 11-10-2018 IPR017516 AbrB duplication APT56_27410 f4d194079079f0391fc3ad6f31cccb75 183 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 176 6.1E-72 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 APT56_27410 f4d194079079f0391fc3ad6f31cccb75 183 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 156 1.0E-55 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 APT56_27410 f4d194079079f0391fc3ad6f31cccb75 183 SUPERFAMILY SSF51182 1 179 5.14E-68 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_27410 f4d194079079f0391fc3ad6f31cccb75 183 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 174 2.8E-64 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 APT56_27410 f4d194079079f0391fc3ad6f31cccb75 183 Gene3D G3DSA:2.60.120.10 1 178 9.4E-64 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_21015 65c55641247e1b970b7cdaab2823e4d8 311 PIRSF PIRSF001365 8 310 1.5E-47 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_21015 65c55641247e1b970b7cdaab2823e4d8 311 Gene3D G3DSA:3.20.20.70 4 311 4.5E-106 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_21015 65c55641247e1b970b7cdaab2823e4d8 311 SUPERFAMILY SSF51569 7 305 9.0E-64 T 11-10-2018 APT56_21015 65c55641247e1b970b7cdaab2823e4d8 311 Pfam PF00701 Dihydrodipicolinate synthetase family 12 295 7.1E-28 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_21015 65c55641247e1b970b7cdaab2823e4d8 311 SMART SM01130 10 303 2.5E-54 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_21560 8848c35bbf65d0b8a7cd04d416c37899 131 SUPERFAMILY SSF54427 32 129 2.63E-33 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_21560 8848c35bbf65d0b8a7cd04d416c37899 131 Gene3D G3DSA:3.10.450.50 7 131 3.1E-37 T 11-10-2018 APT56_21560 8848c35bbf65d0b8a7cd04d416c37899 131 Pfam PF02810 SEC-C motif 8 23 2.8E-4 T 11-10-2018 IPR004027 SEC-C motif APT56_21560 8848c35bbf65d0b8a7cd04d416c37899 131 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 5 129 27.685 T 11-10-2018 IPR023006 Uncharacterised protein family UPF0225 APT56_18330 ec4b2fd304ff3c2c805f3790407cb6df 309 SMART SM01130 11 303 7.4E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_18330 ec4b2fd304ff3c2c805f3790407cb6df 309 SUPERFAMILY SSF51569 14 299 7.43E-29 T 11-10-2018 APT56_18330 ec4b2fd304ff3c2c805f3790407cb6df 309 Gene3D G3DSA:3.20.20.70 9 306 3.8E-25 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_18330 ec4b2fd304ff3c2c805f3790407cb6df 309 Pfam PF00701 Dihydrodipicolinate synthetase family 112 292 1.9E-5 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_17420 55e856dcc56a8e33486d5535e0a5d2fa 198 SUPERFAMILY SSF52218 1 195 4.66E-49 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_17420 55e856dcc56a8e33486d5535e0a5d2fa 198 Pfam PF02525 Flavodoxin-like fold 1 173 3.9E-44 T 11-10-2018 IPR003680 Flavodoxin-like fold APT56_17420 55e856dcc56a8e33486d5535e0a5d2fa 198 Gene3D G3DSA:3.40.50.360 1 195 4.6E-49 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_22675 822ee288f6da5112a3ad967c66b8915e 290 Gene3D G3DSA:3.40.50.300 2 225 1.6E-59 T 11-10-2018 APT56_22675 822ee288f6da5112a3ad967c66b8915e 290 SMART SM00382 33 216 2.5E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22675 822ee288f6da5112a3ad967c66b8915e 290 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 24 254 1.3E-101 T 11-10-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 APT56_22675 822ee288f6da5112a3ad967c66b8915e 290 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_22675 822ee288f6da5112a3ad967c66b8915e 290 Pfam PF00005 ABC transporter 24 166 9.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_22675 822ee288f6da5112a3ad967c66b8915e 290 SUPERFAMILY SSF52540 5 226 7.64E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_09480 bc72240a72352cebe12014f1a5af7ccf 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.9E-28 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_09480 bc72240a72352cebe12014f1a5af7ccf 217 SUPERFAMILY SSF161098 13 206 7.06E-45 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09480 bc72240a72352cebe12014f1a5af7ccf 217 Gene3D G3DSA:1.10.3720.10 3 216 4.5E-53 T 11-10-2018 IPR035906 MetI-like superfamily APT56_09480 bc72240a72352cebe12014f1a5af7ccf 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 213 3.3E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13995 8d0769b2865e35eb7a81a21d6207f6bd 366 Pfam PF02311 AraC-like ligand binding domain 256 322 4.1E-7 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_13995 8d0769b2865e35eb7a81a21d6207f6bd 366 Gene3D G3DSA:2.60.120.10 198 360 3.8E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_13995 8d0769b2865e35eb7a81a21d6207f6bd 366 SUPERFAMILY SSF51182 23 349 2.0E-52 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_13995 8d0769b2865e35eb7a81a21d6207f6bd 366 Gene3D G3DSA:2.60.120.10 17 197 2.4E-19 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_23335 2eeef56af5895d4f0b36e0ea61c86b70 116 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 25 98 5.7E-14 T 11-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 APT56_23335 2eeef56af5895d4f0b36e0ea61c86b70 116 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 18 112 2.4E-34 T 11-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 APT56_17620 ba669fc1fe336b1400e2733276f05b89 264 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_17620 ba669fc1fe336b1400e2733276f05b89 264 SMART SM00382 27 240 1.2E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17620 ba669fc1fe336b1400e2733276f05b89 264 Gene3D G3DSA:3.40.50.300 1 242 4.5E-51 T 11-10-2018 APT56_17620 ba669fc1fe336b1400e2733276f05b89 264 Pfam PF00005 ABC transporter 18 168 2.7E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_17620 ba669fc1fe336b1400e2733276f05b89 264 SUPERFAMILY SSF52540 2 240 9.67E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08695 df7b5420b3daa63d37e688304732bb5a 325 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 27 321 5.4E-112 T 11-10-2018 IPR035094 Histidine N-alpha-methyltransferase KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 APT56_08695 df7b5420b3daa63d37e688304732bb5a 325 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 28 324 8.4E-98 T 11-10-2018 IPR019257 Histidine-specific methyltransferase, SAM-dependent APT56_08695 df7b5420b3daa63d37e688304732bb5a 325 Gene3D G3DSA:3.40.50.150 53 225 1.7E-44 T 11-10-2018 APT56_08695 df7b5420b3daa63d37e688304732bb5a 325 PIRSF PIRSF018005 4 325 1.7E-104 T 11-10-2018 IPR017804 Methyltransferase EgtD-like GO:0008168 APT56_08695 df7b5420b3daa63d37e688304732bb5a 325 SUPERFAMILY SSF53335 43 324 3.99E-14 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_06675 08b67c391c5a5f64474b9fb66eb3e3cb 117 Gene3D G3DSA:3.30.1330.40 1 117 5.5E-39 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_06675 08b67c391c5a5f64474b9fb66eb3e3cb 117 Pfam PF01042 Endoribonuclease L-PSP 6 115 1.5E-24 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_06675 08b67c391c5a5f64474b9fb66eb3e3cb 117 SUPERFAMILY SSF55298 11 116 1.01E-28 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_06675 08b67c391c5a5f64474b9fb66eb3e3cb 117 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 92 110 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 SUPERFAMILY SSF53822 71 338 2.36E-56 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 SUPERFAMILY SSF47413 13 71 5.53E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 SMART SM00354 13 83 4.9E-23 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 16 34 - T 11-10-2018 APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 Pfam PF13377 Periplasmic binding protein-like domain 181 341 6.2E-29 T 11-10-2018 APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 Gene3D G3DSA:3.40.50.2300 76 322 1.2E-67 T 11-10-2018 APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 Gene3D G3DSA:3.40.50.2300 170 302 1.2E-67 T 11-10-2018 APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 Gene3D G3DSA:1.10.260.40 6 71 4.0E-21 T 11-10-2018 APT56_09885 ad5eec224080ba7707fa409cfbf1268e 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 15 60 2.6E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APT56_07745 04c04b015d3af5cd73b6a4a0fed19218 209 Pfam PF03853 YjeF-related protein N-terminus 23 176 2.4E-38 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 APT56_07745 04c04b015d3af5cd73b6a4a0fed19218 209 SUPERFAMILY SSF64153 5 202 1.14E-49 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 APT56_07745 04c04b015d3af5cd73b6a4a0fed19218 209 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 2 201 21.689 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 APT56_07745 04c04b015d3af5cd73b6a4a0fed19218 209 Gene3D G3DSA:3.40.50.10260 5 203 1.3E-45 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 APT56_07745 04c04b015d3af5cd73b6a4a0fed19218 209 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 21 200 1.4E-32 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 129 157 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 8.3E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 219 8.3E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 8.3E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 8.3E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 8.3E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 8.3E-34 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 131 4.8E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 70 81 4.8E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 4.8E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 Gene3D G3DSA:3.40.50.720 2 241 1.3E-64 T 11-10-2018 APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 235 2.2E-42 T 11-10-2018 APT56_05085 16fbdc1a8bd7083d69bc80b108609d98 242 SUPERFAMILY SSF51735 5 238 2.09E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_10950 947f17bff516b5f462ef7106f0cce67f 143 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 55 129 3.8E-15 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_10950 947f17bff516b5f462ef7106f0cce67f 143 Gene3D G3DSA:3.40.50.720 28 140 1.5E-24 T 11-10-2018 APT56_10950 947f17bff516b5f462ef7106f0cce67f 143 SUPERFAMILY SSF52283 25 132 4.35E-21 T 11-10-2018 APT56_24140 efadc5cb72bc4544b541d35fee185ca6 691 SUPERFAMILY SSF102588 40 234 3.01E-15 T 11-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 APT56_24140 efadc5cb72bc4544b541d35fee185ca6 691 Pfam PF02585 GlcNAc-PI de-N-acetylase 41 230 2.7E-16 T 11-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 APT56_24140 efadc5cb72bc4544b541d35fee185ca6 691 Gene3D G3DSA:3.40.50.10320 39 274 5.5E-13 T 11-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 APT56_24140 efadc5cb72bc4544b541d35fee185ca6 691 SUPERFAMILY SSF89372 300 512 1.1E-13 T 11-10-2018 APT56_01920 c67edd683cd1ee8409e863681e52993e 512 Pfam PF06742 Protein of unknown function (DUF1214) 352 454 2.9E-31 T 11-10-2018 IPR010621 Domain of unknown function DUF1214 APT56_01920 c67edd683cd1ee8409e863681e52993e 512 SUPERFAMILY SSF160935 18 469 3.01E-110 T 11-10-2018 APT56_01920 c67edd683cd1ee8409e863681e52993e 512 Pfam PF06863 Protein of unknown function (DUF1254) 76 204 1.8E-37 T 11-10-2018 IPR010679 Domain of unknown function DUF1254 APT56_01920 c67edd683cd1ee8409e863681e52993e 512 Gene3D G3DSA:2.60.120.600 313 473 1.2E-35 T 11-10-2018 IPR037049 Domain of unknown function DUF1214, C-terminal domain superfamily APT56_22760 553f7f6abb89ff510a6f359dbf99a6b4 225 Gene3D G3DSA:1.20.144.10 129 220 3.8E-14 T 11-10-2018 APT56_22760 553f7f6abb89ff510a6f359dbf99a6b4 225 SMART SM00014 90 203 1.0E-8 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT56_22760 553f7f6abb89ff510a6f359dbf99a6b4 225 SUPERFAMILY SSF48317 5 208 6.54E-31 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily APT56_22760 553f7f6abb89ff510a6f359dbf99a6b4 225 Pfam PF01569 PAP2 superfamily 91 202 1.2E-19 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT56_11940 5b0c3071067f742b29493584897de7b6 210 Pfam PF04344 Chemotaxis phosphatase, CheZ 14 210 8.2E-77 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 APT56_11940 5b0c3071067f742b29493584897de7b6 210 SUPERFAMILY SSF75708 7 209 1.31E-63 T 11-10-2018 APT56_11940 5b0c3071067f742b29493584897de7b6 210 Gene3D G3DSA:1.20.5.590 7 32 8.3E-7 T 11-10-2018 APT56_11940 5b0c3071067f742b29493584897de7b6 210 PIRSF PIRSF002884 1 210 2.7E-86 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 APT56_11940 5b0c3071067f742b29493584897de7b6 210 Gene3D G3DSA:1.10.287.500 33 166 6.2E-52 T 11-10-2018 APT56_24135 e7941d193ef73a7d5af29764967d2102 199 SUPERFAMILY SSF46689 15 87 1.25E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_24135 e7941d193ef73a7d5af29764967d2102 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 1.4E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_24135 e7941d193ef73a7d5af29764967d2102 199 SUPERFAMILY SSF48498 82 195 2.93E-27 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_24135 e7941d193ef73a7d5af29764967d2102 199 Gene3D G3DSA:1.10.357.10 10 197 2.5E-57 T 11-10-2018 APT56_27525 f1a066eed463e6c1150a9cac3c451ca3 285 SUPERFAMILY SSF52499 5 272 1.83E-12 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_27525 f1a066eed463e6c1150a9cac3c451ca3 285 Gene3D G3DSA:3.40.50.850 5 273 4.3E-43 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_04630 c8933891fea2594aaed2bc7d8ac347e0 346 Gene3D G3DSA:3.30.200.20 5 98 5.3E-24 T 11-10-2018 APT56_04630 c8933891fea2594aaed2bc7d8ac347e0 346 Gene3D G3DSA:3.90.1200.10 99 340 4.4E-70 T 11-10-2018 APT56_04630 c8933891fea2594aaed2bc7d8ac347e0 346 SUPERFAMILY SSF56112 10 325 4.67E-48 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_04630 c8933891fea2594aaed2bc7d8ac347e0 346 Pfam PF01636 Phosphotransferase enzyme family 30 258 5.3E-36 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase APT56_08480 a371dc3abb9f96e25cfb85198d45e604 372 Gene3D G3DSA:3.40.50.620 1 219 3.3E-90 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_08480 a371dc3abb9f96e25cfb85198d45e604 372 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 10 371 1.2E-128 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 APT56_08480 a371dc3abb9f96e25cfb85198d45e604 372 Gene3D G3DSA:2.40.30.10 294 372 1.7E-23 T 11-10-2018 APT56_08480 a371dc3abb9f96e25cfb85198d45e604 372 Gene3D G3DSA:2.30.30.280 220 292 1.1E-26 T 11-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 APT56_08480 a371dc3abb9f96e25cfb85198d45e604 372 Pfam PF03054 tRNA methyl transferase 10 371 2.1E-130 T 11-10-2018 APT56_08480 a371dc3abb9f96e25cfb85198d45e604 372 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 9 372 38.974 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 APT56_08480 a371dc3abb9f96e25cfb85198d45e604 372 SUPERFAMILY SSF52402 7 251 4.41E-58 T 11-10-2018 APT56_00805 c53bc130ad112cbb504f3d7bf0d997bc 353 Gene3D G3DSA:2.30.320.10 86 353 6.0E-6 T 11-10-2018 IPR035948 YwqG-like superfamily APT56_00805 c53bc130ad112cbb504f3d7bf0d997bc 353 Pfam PF09234 Domain of unknown function (DUF1963) 55 352 4.7E-31 T 11-10-2018 IPR015315 Protein of unknown function DUF1963 APT56_00805 c53bc130ad112cbb504f3d7bf0d997bc 353 SUPERFAMILY SSF103032 25 352 2.35E-27 T 11-10-2018 IPR035948 YwqG-like superfamily APT56_17440 85cda6ddc024e4729dd212bc0b2dd13c 147 Pfam PF00011 Hsp20/alpha crystallin family 51 147 3.6E-19 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain APT56_17440 85cda6ddc024e4729dd212bc0b2dd13c 147 SUPERFAMILY SSF49764 25 146 9.07E-32 T 11-10-2018 IPR008978 HSP20-like chaperone APT56_17440 85cda6ddc024e4729dd212bc0b2dd13c 147 Gene3D G3DSA:2.60.40.790 6 147 1.2E-28 T 11-10-2018 IPR008978 HSP20-like chaperone APT56_01450 04e5c881777de371aa24962cf2d9cf59 223 Pfam PF05433 Glycine zipper 2TM domain 132 172 1.5E-8 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 APT56_24970 d1ba9f58ccaa86c20b06a8912bfca427 409 Pfam PF03069 Acetamidase/Formamidase family 7 383 3.0E-175 T 11-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 APT56_24970 d1ba9f58ccaa86c20b06a8912bfca427 409 SUPERFAMILY SSF141130 16 383 2.62E-77 T 11-10-2018 APT56_24970 d1ba9f58ccaa86c20b06a8912bfca427 409 Gene3D G3DSA:2.60.120.580 188 281 1.0E-20 T 11-10-2018 APT56_24970 d1ba9f58ccaa86c20b06a8912bfca427 409 Gene3D G3DSA:2.60.120.580 5 131 2.4E-15 T 11-10-2018 APT56_22735 27d361175e9d7ab78744ffc03073f7db 113 SMART SM01323 19 105 2.3E-43 T 11-10-2018 IPR003849 Preprotein translocase YajC APT56_22735 27d361175e9d7ab78744ffc03073f7db 113 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 105 8.3E-25 T 11-10-2018 IPR003849 Preprotein translocase YajC APT56_22735 27d361175e9d7ab78744ffc03073f7db 113 Pfam PF02699 Preprotein translocase subunit 23 102 7.2E-31 T 11-10-2018 IPR003849 Preprotein translocase YajC APT56_22735 27d361175e9d7ab78744ffc03073f7db 113 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 4.3E-17 T 11-10-2018 IPR003849 Preprotein translocase YajC APT56_22735 27d361175e9d7ab78744ffc03073f7db 113 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 4.3E-17 T 11-10-2018 IPR003849 Preprotein translocase YajC APT56_04585 6bb2b6536d030c4acb0c836484c2ec03 207 SUPERFAMILY SSF52218 1 207 7.38E-39 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_04585 6bb2b6536d030c4acb0c836484c2ec03 207 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 203 21.685 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 APT56_04585 6bb2b6536d030c4acb0c836484c2ec03 207 Pfam PF02525 Flavodoxin-like fold 1 199 7.7E-33 T 11-10-2018 IPR003680 Flavodoxin-like fold APT56_04585 6bb2b6536d030c4acb0c836484c2ec03 207 Gene3D G3DSA:3.40.50.360 1 207 8.0E-41 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_07780 e8d6d1bc99dd74b7286bce44b2685f8b 554 Pfam PF00171 Aldehyde dehydrogenase family 90 502 3.3E-36 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_07780 e8d6d1bc99dd74b7286bce44b2685f8b 554 Gene3D G3DSA:3.40.309.10 316 515 6.8E-25 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_07780 e8d6d1bc99dd74b7286bce44b2685f8b 554 SUPERFAMILY SSF53720 72 532 1.3E-59 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_07780 e8d6d1bc99dd74b7286bce44b2685f8b 554 TIGRFAM TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN 3 554 1.5E-292 T 11-10-2018 IPR011975 Phenylacetic acid degradation protein PaaN2 APT56_07780 e8d6d1bc99dd74b7286bce44b2685f8b 554 Gene3D G3DSA:3.40.605.10 90 315 1.2E-27 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_09880 a21c4462a9d557be5ab0c630ebfb1bc1 180 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 36 164 5.5E-27 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_20975 9765316cc03e9ce76a9e578ea0a83d15 194 Pfam PF13560 Helix-turn-helix domain 9 67 9.0E-16 T 11-10-2018 APT56_20975 9765316cc03e9ce76a9e578ea0a83d15 194 Pfam PF07883 Cupin domain 128 185 8.7E-13 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_20975 9765316cc03e9ce76a9e578ea0a83d15 194 SUPERFAMILY SSF47413 8 72 1.74E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_20975 9765316cc03e9ce76a9e578ea0a83d15 194 Gene3D G3DSA:1.10.260.40 3 78 6.3E-19 T 11-10-2018 APT56_20975 9765316cc03e9ce76a9e578ea0a83d15 194 SMART SM00530 12 67 1.8E-16 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APT56_20975 9765316cc03e9ce76a9e578ea0a83d15 194 SUPERFAMILY SSF51182 78 187 1.97E-27 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_20975 9765316cc03e9ce76a9e578ea0a83d15 194 Gene3D G3DSA:2.60.120.10 79 186 3.3E-28 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_06965 a5d1fdf928d0cf44efff4abaeae4a5f3 336 PIRSF PIRSF017617 1 336 3.9E-135 T 11-10-2018 IPR023603 Threonine aldolase APT56_06965 a5d1fdf928d0cf44efff4abaeae4a5f3 336 Pfam PF01212 Beta-eliminating lyase 3 283 4.2E-90 T 11-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 APT56_06965 a5d1fdf928d0cf44efff4abaeae4a5f3 336 SUPERFAMILY SSF53383 1 335 3.06E-114 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_06965 a5d1fdf928d0cf44efff4abaeae4a5f3 336 Gene3D G3DSA:3.40.640.10 1 245 8.4E-94 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_06965 a5d1fdf928d0cf44efff4abaeae4a5f3 336 Gene3D G3DSA:3.90.1150.10 246 336 4.4E-27 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_01020 481e529c3ed2d5250d8bf06e80f970a4 497 Pfam PF06097 Bacterial protein of unknown function (DUF945) 20 484 2.7E-73 T 11-10-2018 IPR010352 Protein of unknown function DUF945 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 PIRSF PIRSF037495 1 474 3.8E-163 T 11-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 SUPERFAMILY SSF51905 1 339 3.64E-32 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 Pfam PF04324 BFD-like [2Fe-2S] binding domain 384 436 9.4E-9 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 329 2.5E-17 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 7.6E-14 T 11-10-2018 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 117 135 7.6E-14 T 11-10-2018 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 7.6E-14 T 11-10-2018 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 120 129 1.1E-11 T 11-10-2018 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 161 186 1.1E-11 T 11-10-2018 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 1.1E-11 T 11-10-2018 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 Gene3D G3DSA:3.50.50.60 8 317 7.9E-36 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 Gene3D G3DSA:1.10.10.1100 374 445 6.9E-22 T 11-10-2018 APT56_00490 948d639b3e6909c46b9e9dfea91fb311 480 Gene3D G3DSA:3.50.50.60 129 268 7.9E-36 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 Pfam PF03466 LysR substrate binding domain 87 288 9.3E-34 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 Gene3D G3DSA:3.40.190.10 163 270 1.3E-48 T 11-10-2018 APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 4.7E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 SUPERFAMILY SSF46785 2 111 8.32E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 Gene3D G3DSA:1.10.10.10 1 87 8.2E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 SUPERFAMILY SSF53850 89 284 4.64E-33 T 11-10-2018 APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 Gene3D G3DSA:3.40.190.10 88 285 1.3E-48 T 11-10-2018 APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_18825 7a7fd99469c1f38febb184c73b34b46c 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_08530 a3c707fe49b7c814ca630ff915430ed4 371 Pfam PF01594 AI-2E family transporter 15 340 1.6E-53 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like APT56_24210 242540fdbab6a21d353ab8370e261bee 370 Pfam PF01757 Acyltransferase family 8 341 1.9E-23 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 APT56_01925 e5d0b6fa6a9880feb63c057bbf443fe4 196 SUPERFAMILY SSF53706 37 196 6.81E-53 T 11-10-2018 APT56_01925 e5d0b6fa6a9880feb63c057bbf443fe4 196 Pfam PF00384 Molybdopterin oxidoreductase 108 140 1.2E-5 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_01925 e5d0b6fa6a9880feb63c057bbf443fe4 196 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 49 67 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 APT56_01925 e5d0b6fa6a9880feb63c057bbf443fe4 196 Gene3D G3DSA:3.40.50.740 110 196 1.2E-33 T 11-10-2018 APT56_01925 e5d0b6fa6a9880feb63c057bbf443fe4 196 Gene3D G3DSA:2.20.25.90 38 109 2.8E-17 T 11-10-2018 APT56_01925 e5d0b6fa6a9880feb63c057bbf443fe4 196 SMART SM00926 44 105 9.4E-23 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_01925 e5d0b6fa6a9880feb63c057bbf443fe4 196 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 104 6.8E-19 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_18610 745f7bc36dd7ad76c9f4f42faec28708 322 Gene3D G3DSA:3.40.190.150 26 312 6.4E-116 T 11-10-2018 APT56_18610 745f7bc36dd7ad76c9f4f42faec28708 322 PIRSF PIRSF017082 1 321 6.5E-88 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18610 745f7bc36dd7ad76c9f4f42faec28708 322 Gene3D G3DSA:3.40.190.10 124 247 6.4E-116 T 11-10-2018 APT56_18610 745f7bc36dd7ad76c9f4f42faec28708 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 317 3.7E-94 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_18610 745f7bc36dd7ad76c9f4f42faec28708 322 SUPERFAMILY SSF53850 109 282 2.17E-18 T 11-10-2018 APT56_05425 89a4b205fafe77b858ab6f2eed481c39 267 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 27 240 6.8E-18 T 11-10-2018 APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 Gene3D G3DSA:3.30.70.920 57 150 2.0E-19 T 11-10-2018 APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 3.6E-16 T 11-10-2018 APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 Gene3D G3DSA:1.10.10.10 1 56 2.8E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 SUPERFAMILY SSF46785 2 63 2.95E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 Pfam PF01037 Lrp/AsnC ligand binding domain 69 142 9.3E-18 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 SMART SM00344 3 112 1.2E-35 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 8.1E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 8.1E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 8.1E-12 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APT56_23245 d7e1ad08bccaadda8602a98adb56c9d1 157 SUPERFAMILY SSF54909 63 148 4.29E-17 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_12895 93e0fd702c5a87946cf37548ad3ec50c 461 TIGRFAM TIGR00886 2A0108: nitrite transporter 27 413 1.1E-104 T 11-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 APT56_12895 93e0fd702c5a87946cf37548ad3ec50c 461 SUPERFAMILY SSF103473 26 455 9.81E-36 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_12895 93e0fd702c5a87946cf37548ad3ec50c 461 Pfam PF07690 Major Facilitator Superfamily 36 379 2.2E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_12895 93e0fd702c5a87946cf37548ad3ec50c 461 Gene3D G3DSA:1.20.1250.20 1 231 3.9E-80 T 11-10-2018 APT56_12895 93e0fd702c5a87946cf37548ad3ec50c 461 Gene3D G3DSA:1.20.1250.20 232 458 3.2E-75 T 11-10-2018 APT56_09090 fda68ea3b4f7b880155c368125297653 235 Pfam PF01522 Polysaccharide deacetylase 51 188 1.4E-33 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT56_09090 fda68ea3b4f7b880155c368125297653 235 SUPERFAMILY SSF88713 15 209 1.04E-43 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_09090 fda68ea3b4f7b880155c368125297653 235 Gene3D G3DSA:3.20.20.370 1 224 2.5E-59 T 11-10-2018 APT56_10710 58893214adc7e79bab739ed9f5574c95 209 Gene3D G3DSA:1.20.1050.10 88 197 2.3E-25 T 11-10-2018 APT56_10710 58893214adc7e79bab739ed9f5574c95 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 133 194 1.1E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APT56_10710 58893214adc7e79bab739ed9f5574c95 209 SUPERFAMILY SSF52833 2 89 2.04E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_10710 58893214adc7e79bab739ed9f5574c95 209 Pfam PF13417 Glutathione S-transferase, N-terminal domain 9 83 9.3E-14 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_10710 58893214adc7e79bab739ed9f5574c95 209 SUPERFAMILY SSF47616 76 201 3.62E-25 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APT56_10710 58893214adc7e79bab739ed9f5574c95 209 Gene3D G3DSA:3.40.30.10 1 83 3.7E-24 T 11-10-2018 APT56_04965 e7e785b7f0f50c103b20f42b0bdff41e 475 Gene3D G3DSA:2.20.200.10 106 350 2.5E-104 T 11-10-2018 APT56_04965 e7e785b7f0f50c103b20f42b0bdff41e 475 Gene3D G3DSA:1.20.1600.10 60 460 2.5E-104 T 11-10-2018 APT56_04965 e7e785b7f0f50c103b20f42b0bdff41e 475 SUPERFAMILY SSF56954 8 461 9.29E-87 T 11-10-2018 APT56_04965 e7e785b7f0f50c103b20f42b0bdff41e 475 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 460 8.8E-83 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APT56_04965 e7e785b7f0f50c103b20f42b0bdff41e 475 Pfam PF02321 Outer membrane efflux protein 69 250 8.3E-18 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_04965 e7e785b7f0f50c103b20f42b0bdff41e 475 Pfam PF02321 Outer membrane efflux protein 283 459 2.8E-20 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 Pfam PF00248 Aldo/keto reductase family 16 251 1.2E-44 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 SUPERFAMILY SSF51430 2 257 9.82E-78 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 Gene3D G3DSA:3.20.20.100 1 267 1.9E-89 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 6.0E-44 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 6.0E-44 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 6.0E-44 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 6.0E-44 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 6.0E-44 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 APT56_23775 355aded36cbbf0d48aa424a9a192dae1 267 PIRSF PIRSF000097 1 265 8.9E-64 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 SUPERFAMILY SSF51735 11 255 3.74E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 3.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 3.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 3.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 3.2E-27 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 5.4E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 5.4E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 8.3E-52 T 11-10-2018 APT56_11490 2b971ac4d46dd40b4317cfd483168800 258 Gene3D G3DSA:3.40.50.720 5 257 4.6E-64 T 11-10-2018 APT56_00140 1085ea53e3b8c9bd443847bd1cdb59dd 305 Pfam PF02195 ParB-like nuclease domain 41 131 3.8E-25 T 11-10-2018 IPR003115 ParB/Sulfiredoxin APT56_00140 1085ea53e3b8c9bd443847bd1cdb59dd 305 SUPERFAMILY SSF110849 40 170 3.87E-33 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily APT56_00140 1085ea53e3b8c9bd443847bd1cdb59dd 305 Gene3D G3DSA:3.90.1530.30 52 117 7.4E-27 T 11-10-2018 APT56_00140 1085ea53e3b8c9bd443847bd1cdb59dd 305 SMART SM00470 39 131 2.6E-34 T 11-10-2018 IPR003115 ParB/Sulfiredoxin APT56_00140 1085ea53e3b8c9bd443847bd1cdb59dd 305 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 39 216 2.1E-58 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 APT56_00140 1085ea53e3b8c9bd443847bd1cdb59dd 305 Gene3D G3DSA:1.10.10.2830 118 231 8.3E-36 T 11-10-2018 APT56_08840 9dd612f027e044eb02ae94f86ac37cf4 228 Pfam PF00072 Response regulator receiver domain 3 111 1.1E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_08840 9dd612f027e044eb02ae94f86ac37cf4 228 SMART SM00448 1 111 1.5E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_08840 9dd612f027e044eb02ae94f86ac37cf4 228 Gene3D G3DSA:3.40.50.2300 1 123 3.8E-37 T 11-10-2018 APT56_08840 9dd612f027e044eb02ae94f86ac37cf4 228 Gene3D G3DSA:1.10.10.10 124 226 2.0E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08840 9dd612f027e044eb02ae94f86ac37cf4 228 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 219 2.2E-94 T 11-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 APT56_08840 9dd612f027e044eb02ae94f86ac37cf4 228 SUPERFAMILY SSF52172 1 177 6.4E-42 T 11-10-2018 IPR011006 CheY-like superfamily APT56_08840 9dd612f027e044eb02ae94f86ac37cf4 228 SMART SM00862 144 219 1.8E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_08840 9dd612f027e044eb02ae94f86ac37cf4 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 2.8E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_15195 81994ddfd5e3009623abbc34330c7249 118 SUPERFAMILY SSF54593 9 117 9.26E-25 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_15195 81994ddfd5e3009623abbc34330c7249 118 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 112 2.0E-9 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_15195 81994ddfd5e3009623abbc34330c7249 118 Gene3D G3DSA:3.10.180.10 2 117 5.6E-21 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_19865 1c5496aca85cd39e431cd806baef0ec9 489 SUPERFAMILY SSF46785 4 68 1.82E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_19865 1c5496aca85cd39e431cd806baef0ec9 489 Gene3D G3DSA:3.40.640.10 99 465 6.7E-115 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_19865 1c5496aca85cd39e431cd806baef0ec9 489 SMART SM00345 5 64 4.7E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19865 1c5496aca85cd39e431cd806baef0ec9 489 Pfam PF00155 Aminotransferase class I and II 141 442 1.7E-23 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_19865 1c5496aca85cd39e431cd806baef0ec9 489 SUPERFAMILY SSF53383 111 472 8.8E-84 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_19865 1c5496aca85cd39e431cd806baef0ec9 489 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 64 7.5E-12 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_19865 1c5496aca85cd39e431cd806baef0ec9 489 Gene3D G3DSA:1.10.10.10 1 92 7.2E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18565 d61b45a122bfa16b5102ff93198c8eb3 408 Pfam PF07690 Major Facilitator Superfamily 267 396 1.0E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_18565 d61b45a122bfa16b5102ff93198c8eb3 408 Pfam PF07690 Major Facilitator Superfamily 22 241 1.7E-14 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_18565 d61b45a122bfa16b5102ff93198c8eb3 408 SUPERFAMILY SSF103473 11 396 4.71E-38 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_18565 d61b45a122bfa16b5102ff93198c8eb3 408 Gene3D G3DSA:1.20.1250.20 8 393 2.0E-36 T 11-10-2018 APT56_16100 424581f763e3a23a5b893cb1eec22eae 285 Pfam PF13503 Domain of unknown function (DUF4123) 48 135 6.8E-13 T 11-10-2018 IPR025391 Domain of unknown function DUF4123 APT56_04730 0d7263703d6f1c66e37df718c2adf3f0 286 SUPERFAMILY SSF54637 10 157 1.8E-45 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_04730 0d7263703d6f1c66e37df718c2adf3f0 286 SUPERFAMILY SSF54637 177 278 1.73E-25 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_04730 0d7263703d6f1c66e37df718c2adf3f0 286 Gene3D G3DSA:3.10.129.10 14 286 1.4E-84 T 11-10-2018 APT56_04730 0d7263703d6f1c66e37df718c2adf3f0 286 Pfam PF01575 MaoC like domain 162 259 6.5E-23 T 11-10-2018 IPR002539 MaoC-like dehydratase domain APT56_04730 0d7263703d6f1c66e37df718c2adf3f0 286 Pfam PF13452 N-terminal half of MaoC dehydratase 37 136 4.5E-12 T 11-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 APT56_23785 6ecadb80d569e0f87b1b4459f73e939b 119 Gene3D G3DSA:3.30.780.10 40 119 7.1E-29 T 11-10-2018 APT56_23785 6ecadb80d569e0f87b1b4459f73e939b 119 PIRSF PIRSF037511 1 119 3.8E-33 T 11-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 APT56_23785 6ecadb80d569e0f87b1b4459f73e939b 119 SUPERFAMILY SSF55159 7 115 1.44E-26 T 11-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 APT56_23785 6ecadb80d569e0f87b1b4459f73e939b 119 Pfam PF01253 Translation initiation factor SUI1 43 109 9.2E-15 T 11-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 APT56_05055 d355bfc0beb71b46d7c67b10dd5b62db 321 SUPERFAMILY SSF46785 7 116 3.91E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05055 d355bfc0beb71b46d7c67b10dd5b62db 321 Gene3D G3DSA:3.40.190.290 169 315 9.6E-29 T 11-10-2018 APT56_05055 d355bfc0beb71b46d7c67b10dd5b62db 321 Gene3D G3DSA:1.10.10.10 6 92 7.7E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05055 d355bfc0beb71b46d7c67b10dd5b62db 321 Pfam PF03466 LysR substrate binding domain 91 316 1.6E-24 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_05055 d355bfc0beb71b46d7c67b10dd5b62db 321 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.4E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_05055 d355bfc0beb71b46d7c67b10dd5b62db 321 SUPERFAMILY SSF53850 92 318 5.43E-28 T 11-10-2018 APT56_05055 d355bfc0beb71b46d7c67b10dd5b62db 321 Gene3D G3DSA:3.40.190.10 93 161 1.7E-10 T 11-10-2018 APT56_01695 a53febcfa78fdcab927061a5163b9b22 469 Gene3D G3DSA:1.20.1720.10 24 227 3.3E-43 T 11-10-2018 APT56_01695 a53febcfa78fdcab927061a5163b9b22 469 Pfam PF07690 Major Facilitator Superfamily 28 417 6.8E-51 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_01695 a53febcfa78fdcab927061a5163b9b22 469 Gene3D G3DSA:1.20.1250.20 268 456 4.2E-18 T 11-10-2018 APT56_01695 a53febcfa78fdcab927061a5163b9b22 469 SUPERFAMILY SSF103473 20 456 2.35E-61 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_04860 130338609132fbdd374b0fe1b99b1c76 206 Pfam PF09335 SNARE associated Golgi protein 40 164 1.6E-21 T 11-10-2018 IPR032816 SNARE associated Golgi protein APT56_15055 13c8d51b5268ab78a43622b6e501254f 314 SUPERFAMILY SSF103481 205 304 1.44E-15 T 11-10-2018 APT56_15055 13c8d51b5268ab78a43622b6e501254f 314 SUPERFAMILY SSF103481 62 158 4.32E-10 T 11-10-2018 APT56_15055 13c8d51b5268ab78a43622b6e501254f 314 Pfam PF00892 EamA-like transporter family 22 154 8.6E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_15055 13c8d51b5268ab78a43622b6e501254f 314 Pfam PF00892 EamA-like transporter family 164 294 3.1E-10 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_00565 d9978c7433cc6dcd0a2901b5ad543599 203 Pfam PF13460 NAD(P)H-binding 7 190 3.4E-28 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_00565 d9978c7433cc6dcd0a2901b5ad543599 203 SUPERFAMILY SSF51735 1 202 1.44E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_00565 d9978c7433cc6dcd0a2901b5ad543599 203 Gene3D G3DSA:3.40.50.720 1 203 5.3E-53 T 11-10-2018 APT56_01035 381189914165a449aa7cc9711195718c 308 SUPERFAMILY SSF161098 92 288 2.49E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01035 381189914165a449aa7cc9711195718c 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 308 1.6E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_01035 381189914165a449aa7cc9711195718c 308 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 16 67 4.3E-10 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_01035 381189914165a449aa7cc9711195718c 308 Gene3D G3DSA:1.10.3720.10 86 305 2.8E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_12595 54941ced9a3d1bac17f0f5784fa376a6 135 Pfam PF07681 DoxX 9 89 2.4E-18 T 11-10-2018 IPR032808 DoxX family APT56_13900 ecc85d41ee4c58f5b2de1bbadf314f53 358 Gene3D G3DSA:3.60.15.10 71 331 1.7E-79 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_13900 ecc85d41ee4c58f5b2de1bbadf314f53 358 SUPERFAMILY SSF56281 77 326 1.18E-35 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_13900 ecc85d41ee4c58f5b2de1bbadf314f53 358 Pfam PF12706 Beta-lactamase superfamily domain 94 286 2.9E-46 T 11-10-2018 IPR001279 Metallo-beta-lactamase APT56_03760 8097fe8973b0381ab4461bb9c9766820 168 Pfam PF07321 Type III secretion protein YscO 5 151 1.3E-32 T 11-10-2018 IPR009929 Type III secretion sytem,YscO APT56_18515 ba7581716cf801bd0c5504328b445b29 113 Pfam PF02627 Carboxymuconolactone decarboxylase family 23 105 7.9E-21 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_18515 ba7581716cf801bd0c5504328b445b29 113 SUPERFAMILY SSF69118 4 107 1.09E-28 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_18515 ba7581716cf801bd0c5504328b445b29 113 Gene3D G3DSA:1.20.1290.10 2 111 2.9E-31 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_18515 ba7581716cf801bd0c5504328b445b29 113 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 41 88 2.1E-18 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_10815 3ef5904bdbb3075bab3e9d4c91cbe5ae 295 SUPERFAMILY SSF103481 180 283 6.02E-13 T 11-10-2018 APT56_10815 3ef5904bdbb3075bab3e9d4c91cbe5ae 295 SUPERFAMILY SSF103481 30 133 2.09E-10 T 11-10-2018 APT56_10815 3ef5904bdbb3075bab3e9d4c91cbe5ae 295 Pfam PF00892 EamA-like transporter family 145 280 8.4E-19 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_10815 3ef5904bdbb3075bab3e9d4c91cbe5ae 295 Pfam PF00892 EamA-like transporter family 1 129 1.5E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_22880 70dd720b6b8cd27dda3c8f918b32b625 174 Gene3D G3DSA:3.40.980.10 2 170 5.1E-49 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily APT56_22880 70dd720b6b8cd27dda3c8f918b32b625 174 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 7 166 2.5E-77 T 11-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 APT56_22880 70dd720b6b8cd27dda3c8f918b32b625 174 Pfam PF00994 Probable molybdopterin binding domain 12 153 8.3E-32 T 11-10-2018 IPR001453 MoaB/Mog domain APT56_22880 70dd720b6b8cd27dda3c8f918b32b625 174 SMART SM00852 12 156 3.4E-29 T 11-10-2018 IPR001453 MoaB/Mog domain APT56_22880 70dd720b6b8cd27dda3c8f918b32b625 174 PIRSF PIRSF006443 1 164 2.3E-60 T 11-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 APT56_22880 70dd720b6b8cd27dda3c8f918b32b625 174 SUPERFAMILY SSF53218 9 166 2.88E-43 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily APT56_22880 70dd720b6b8cd27dda3c8f918b32b625 174 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 9 150 1.8E-37 T 11-10-2018 IPR001453 MoaB/Mog domain APT56_22880 70dd720b6b8cd27dda3c8f918b32b625 174 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 70 83 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 APT56_19310 1a2499c014631e7a9f5655b57437bf23 345 SUPERFAMILY SSF56645 29 192 1.44E-16 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_19310 1a2499c014631e7a9f5655b57437bf23 345 Gene3D G3DSA:2.40.110.10 103 193 1.4E-12 T 11-10-2018 APT56_04555 fe0fd730b1f3d6e52eb23986070c1fca 690 Pfam PF05170 AsmA family 1 575 4.7E-137 T 11-10-2018 IPR007844 AsmA APT56_05995 2052fac4c0fee3d2147560df117b41b7 319 SUPERFAMILY SSF53850 82 277 1.18E-12 T 11-10-2018 APT56_05995 2052fac4c0fee3d2147560df117b41b7 319 Gene3D G3DSA:3.40.190.10 120 243 3.5E-105 T 11-10-2018 APT56_05995 2052fac4c0fee3d2147560df117b41b7 319 Gene3D G3DSA:3.40.190.150 23 307 3.5E-105 T 11-10-2018 APT56_05995 2052fac4c0fee3d2147560df117b41b7 319 PIRSF PIRSF017082 1 318 9.4E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_05995 2052fac4c0fee3d2147560df117b41b7 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 42 314 1.7E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13450 57f411dd90a8cbf97caaadd86a8a9785 358 Pfam PF01032 FecCD transport family 39 353 1.4E-80 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APT56_13450 57f411dd90a8cbf97caaadd86a8a9785 358 Gene3D G3DSA:1.10.3470.10 24 357 5.8E-92 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_13450 57f411dd90a8cbf97caaadd86a8a9785 358 SUPERFAMILY SSF81345 21 353 7.06E-75 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APT56_20300 53d6545dfe9719b05f06d4d08bf7e93f 253 Gene3D G3DSA:3.30.450.40 83 252 1.1E-28 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_20300 53d6545dfe9719b05f06d4d08bf7e93f 253 SUPERFAMILY SSF55781 82 250 1.11E-32 T 11-10-2018 APT56_20300 53d6545dfe9719b05f06d4d08bf7e93f 253 SMART SM00346 11 99 4.0E-5 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_20300 53d6545dfe9719b05f06d4d08bf7e93f 253 Gene3D G3DSA:1.10.10.10 10 72 5.5E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20300 53d6545dfe9719b05f06d4d08bf7e93f 253 Pfam PF01614 Bacterial transcriptional regulator 133 243 1.3E-12 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_20300 53d6545dfe9719b05f06d4d08bf7e93f 253 SUPERFAMILY SSF46785 13 72 5.55E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20300 53d6545dfe9719b05f06d4d08bf7e93f 253 Pfam PF09339 IclR helix-turn-helix domain 14 61 5.9E-11 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_02395 5313d215fc5668394d4f96c52dfe58cf 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 291 7.2E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_04020 28f86850bd172b7cc8cee575f19e481a 134 Pfam PF03788 LrgA family 30 121 1.6E-23 T 11-10-2018 IPR005538 LrgA/CidA family GO:0016021 APT56_17240 f02828ade238a7972d40bcca2b89df8d 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.0E-12 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_17240 f02828ade238a7972d40bcca2b89df8d 305 SUPERFAMILY SSF46785 1 84 2.99E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_17240 f02828ade238a7972d40bcca2b89df8d 305 Pfam PF03466 LysR substrate binding domain 87 300 1.8E-20 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_17240 f02828ade238a7972d40bcca2b89df8d 305 Gene3D G3DSA:1.10.10.10 1 86 1.9E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_17240 f02828ade238a7972d40bcca2b89df8d 305 Gene3D G3DSA:3.40.190.10 87 186 1.7E-8 T 11-10-2018 APT56_17240 f02828ade238a7972d40bcca2b89df8d 305 Gene3D G3DSA:3.40.190.10 187 270 3.1E-6 T 11-10-2018 APT56_17240 f02828ade238a7972d40bcca2b89df8d 305 SUPERFAMILY SSF53850 90 301 2.53E-21 T 11-10-2018 APT56_12800 60188619c8b44083eebd6c25648e361e 385 SUPERFAMILY SSF51412 15 357 3.51E-31 T 11-10-2018 APT56_12800 60188619c8b44083eebd6c25648e361e 385 Pfam PF03060 Nitronate monooxygenase 16 329 2.0E-28 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APT56_12800 60188619c8b44083eebd6c25648e361e 385 Gene3D G3DSA:3.20.20.70 13 382 2.8E-43 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_26305 003fac66640756f7aa480788d63a1221 406 SUPERFAMILY SSF56935 25 406 3.2E-110 T 11-10-2018 APT56_26305 003fac66640756f7aa480788d63a1221 406 Pfam PF02264 LamB porin 27 406 2.1E-113 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 APT56_26305 003fac66640756f7aa480788d63a1221 406 Gene3D G3DSA:2.40.170.10 25 406 8.6E-105 T 11-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 APT56_26305 003fac66640756f7aa480788d63a1221 406 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 32 363 2.0E-155 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 APT56_21970 5d4e27e4f031a405bd402cbea4b6c6ab 175 Pfam PF02627 Carboxymuconolactone decarboxylase family 39 121 3.3E-14 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_21970 5d4e27e4f031a405bd402cbea4b6c6ab 175 SUPERFAMILY SSF69118 1 171 9.6E-45 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_21970 5d4e27e4f031a405bd402cbea4b6c6ab 175 Gene3D G3DSA:1.20.1290.10 32 171 2.9E-49 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_07390 4a1e6da8639e3ece0590a90a8ee98397 112 SMART SM00749 44 107 8.2E-5 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria APT56_07390 4a1e6da8639e3ece0590a90a8ee98397 112 Pfam PF04972 BON domain 39 106 1.9E-18 T 11-10-2018 IPR007055 BON domain APT56_27085 41f08c81eb554e5016c28800b98fae47 346 Pfam PF13439 Glycosyltransferase Family 4 15 165 1.6E-17 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_27085 41f08c81eb554e5016c28800b98fae47 346 SUPERFAMILY SSF53756 1 327 1.14E-63 T 11-10-2018 APT56_27085 41f08c81eb554e5016c28800b98fae47 346 Gene3D G3DSA:3.40.50.2000 1 173 1.3E-21 T 11-10-2018 APT56_27085 41f08c81eb554e5016c28800b98fae47 346 Pfam PF00534 Glycosyl transferases group 1 179 290 1.4E-20 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_27085 41f08c81eb554e5016c28800b98fae47 346 Gene3D G3DSA:3.40.50.2000 174 316 3.2E-28 T 11-10-2018 APT56_17645 857a43ff2f9ed75b1f9480e514edea2c 267 Gene3D G3DSA:1.10.12.10 211 267 3.0E-16 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_17645 857a43ff2f9ed75b1f9480e514edea2c 267 Gene3D G3DSA:3.90.226.10 2 208 1.8E-56 T 11-10-2018 APT56_17645 857a43ff2f9ed75b1f9480e514edea2c 267 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 266 4.3E-47 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_17645 857a43ff2f9ed75b1f9480e514edea2c 267 SUPERFAMILY SSF52096 8 267 3.11E-72 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_17645 857a43ff2f9ed75b1f9480e514edea2c 267 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 APT56_08790 215c8e0eb6d2d18548740bea78ad7ede 159 Pfam PF02472 Biopolymer transport protein ExbD/TolR 16 137 7.2E-32 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 APT56_08790 215c8e0eb6d2d18548740bea78ad7ede 159 Gene3D G3DSA:3.30.420.270 62 133 1.1E-11 T 11-10-2018 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 Gene3D G3DSA:2.40.50.530 1 65 1.3E-21 T 11-10-2018 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 11-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.7E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.7E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.7E-18 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.774 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 SUPERFAMILY SSF143034 2 64 1.23E-23 T 11-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 Pfam PF01632 Ribosomal protein L35 2 62 1.3E-25 T 11-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_10025 558236c5b0aed14d8be5e08576dc15ed 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 3.6E-27 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APT56_21525 257966f39c33d29617b4cdddfdc6d5be 173 Gene3D G3DSA:3.40.630.30 1 171 2.0E-51 T 11-10-2018 APT56_21525 257966f39c33d29617b4cdddfdc6d5be 173 SUPERFAMILY SSF55729 1 170 1.74E-35 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_21525 257966f39c33d29617b4cdddfdc6d5be 173 Pfam PF13302 Acetyltransferase (GNAT) domain 2 140 4.5E-16 T 11-10-2018 IPR000182 GNAT domain APT56_15620 b3ac8e9947539a9c8679798d2d74dc61 232 Gene3D G3DSA:3.40.50.300 44 156 5.0E-34 T 11-10-2018 APT56_15620 b3ac8e9947539a9c8679798d2d74dc61 232 PIRSF PIRSF037290 1 229 2.0E-79 T 11-10-2018 IPR017166 Uncharacterised conserved protein UCP037290 APT56_15620 b3ac8e9947539a9c8679798d2d74dc61 232 SUPERFAMILY SSF52540 44 157 4.16E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07555 2194f99e891299a5c1eba792a74e02da 300 Gene3D G3DSA:1.10.3660.10 193 298 4.8E-33 T 11-10-2018 APT56_07555 2194f99e891299a5c1eba792a74e02da 300 Pfam PF02153 Prephenate dehydrogenase 32 287 2.2E-67 T 11-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 APT56_07555 2194f99e891299a5c1eba792a74e02da 300 SUPERFAMILY SSF51735 20 185 1.9E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_07555 2194f99e891299a5c1eba792a74e02da 300 Gene3D G3DSA:3.40.50.720 19 192 3.1E-52 T 11-10-2018 APT56_07555 2194f99e891299a5c1eba792a74e02da 300 SUPERFAMILY SSF48179 191 297 3.4E-31 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APT56_23300 5a7d3fc4a1122b14378299b6af0fe0b8 163 SUPERFAMILY SSF110087 11 146 6.02E-43 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily APT56_23300 5a7d3fc4a1122b14378299b6af0fe0b8 163 Pfam PF04314 Copper chaperone PCu(A)C 34 136 5.4E-36 T 11-10-2018 IPR007410 Copper chaperone PCuAC APT56_23300 5a7d3fc4a1122b14378299b6af0fe0b8 163 Gene3D G3DSA:2.60.40.1890 37 150 2.8E-35 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily APT56_21775 2c6880e4e970470989fcbe4d489f57ed 348 Pfam PF00248 Aldo/keto reductase family 15 319 2.9E-82 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain APT56_21775 2c6880e4e970470989fcbe4d489f57ed 348 Gene3D G3DSA:3.20.20.100 1 343 9.7E-130 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_21775 2c6880e4e970470989fcbe4d489f57ed 348 SUPERFAMILY SSF51430 1 319 4.71E-105 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 465 584 2.2E-20 T 11-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 Gene3D G3DSA:2.40.110.10 159 288 1.6E-28 T 11-10-2018 APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 Gene3D G3DSA:1.10.540.10 21 157 3.7E-19 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 SUPERFAMILY SSF56645 34 280 1.57E-62 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 449 7.7E-26 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 Gene3D G3DSA:1.20.140.10 289 454 1.3E-47 T 11-10-2018 APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 SUPERFAMILY SSF47203 289 465 6.93E-44 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 2 33 5.1E-11 T 11-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 270 1.5E-16 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_10750 eb7e0b07871f1631b3247bf3c8c58d59 589 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 35 155 6.8E-14 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_11235 bc2b3a80291f88ee137bc11850138694 535 SUPERFAMILY SSF56801 9 526 1.11E-106 T 11-10-2018 APT56_11235 bc2b3a80291f88ee137bc11850138694 535 Gene3D G3DSA:3.40.50.12780 3 418 7.9E-81 T 11-10-2018 APT56_11235 bc2b3a80291f88ee137bc11850138694 535 Gene3D G3DSA:3.30.300.30 425 531 8.1E-16 T 11-10-2018 APT56_11235 bc2b3a80291f88ee137bc11850138694 535 Pfam PF00501 AMP-binding enzyme 15 413 9.3E-66 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 Gene3D G3DSA:3.20.20.210 396 762 0.0 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 764 37.718 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 PIRSF PIRSF000382 1 765 0.0 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 321 7.6E-119 T 11-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 SUPERFAMILY SSF51726 413 763 7.59E-117 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 SUPERFAMILY SSF51726 5 401 3.79E-110 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 Gene3D G3DSA:3.20.20.210 6 530 0.0 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 763 0.0 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT56_08250 7fdbf72f4f97fa428ac5bb3f82abb9bb 765 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 438 759 9.3E-157 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APT56_03865 adf10c042a4ff7bc326a43018ae6cef3 225 SUPERFAMILY SSF158682 75 223 4.45E-23 T 11-10-2018 IPR029024 TerB-like APT56_03865 adf10c042a4ff7bc326a43018ae6cef3 225 Pfam PF04391 Protein of unknown function (DUF533) 40 220 8.7E-63 T 11-10-2018 IPR007486 Inner membrane protein YebE APT56_03865 adf10c042a4ff7bc326a43018ae6cef3 225 Gene3D G3DSA:1.10.3680.10 106 225 5.6E-8 T 11-10-2018 IPR029024 TerB-like APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 Gene3D G3DSA:1.10.10.10 5 159 7.4E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 85 6.9E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 101 6.9E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 135 155 6.9E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 105 121 6.9E-15 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 ProSitePatterns PS01117 MarR-type HTH domain signature. 84 118 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 SMART SM00347 45 145 4.5E-20 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 SUPERFAMILY SSF46785 20 158 4.23E-33 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_09255 89512f905ced31ea41d8ad8b373c7e22 166 Pfam PF01047 MarR family 70 110 6.4E-11 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_00360 710313bef2027b2f5563e4eaa5f18893 352 Gene3D G3DSA:3.40.640.10 5 253 1.2E-69 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_00360 710313bef2027b2f5563e4eaa5f18893 352 SUPERFAMILY SSF53383 14 350 1.04E-92 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_00360 710313bef2027b2f5563e4eaa5f18893 352 Gene3D G3DSA:3.90.1150.10 257 351 9.3E-24 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_00360 710313bef2027b2f5563e4eaa5f18893 352 PIRSF PIRSF017617 5 352 3.8E-103 T 11-10-2018 IPR023603 Threonine aldolase APT56_00360 710313bef2027b2f5563e4eaa5f18893 352 Pfam PF01212 Beta-eliminating lyase 15 295 2.3E-76 T 11-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 318 1.8E-148 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 3.8E-46 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 3.8E-46 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 3.8E-46 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 3.8E-46 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 3.8E-46 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 3.8E-46 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 SUPERFAMILY SSF52096 5 316 6.7E-103 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 6 148 2.2E-66 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 Gene3D G3DSA:3.90.226.10 1 318 9.3E-123 T 11-10-2018 APT56_20245 b0d55ff6e8e54d951c533a8809116c40 321 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 50.083 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APT56_24865 495cf5be751139cbfb99a7b503462832 401 Pfam PF01757 Acyltransferase family 3 332 8.0E-13 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 APT56_22840 2260243cb9598cea7d8d85142f7a7d23 476 Gene3D G3DSA:1.20.1250.20 5 371 1.3E-33 T 11-10-2018 APT56_22840 2260243cb9598cea7d8d85142f7a7d23 476 SUPERFAMILY SSF103473 9 368 4.05E-42 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_22840 2260243cb9598cea7d8d85142f7a7d23 476 Pfam PF07690 Major Facilitator Superfamily 11 283 3.8E-14 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_18310 ac3fd20fa6b0a534315759e0b406bfdc 255 Gene3D G3DSA:3.20.20.60 1 255 1.7E-80 T 11-10-2018 APT56_18310 ac3fd20fa6b0a534315759e0b406bfdc 255 TIGRFAM TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase 7 254 7.4E-138 T 11-10-2018 IPR017648 5-keto-4-deoxy-D-glucarate aldolase GO:0008672|GO:0019394 KEGG: 00053+4.1.2.20 APT56_18310 ac3fd20fa6b0a534315759e0b406bfdc 255 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 20 243 9.5E-53 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 APT56_18310 ac3fd20fa6b0a534315759e0b406bfdc 255 SUPERFAMILY SSF51621 5 251 3.45E-78 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_04105 e7476d69c36fa5a53a6321eeb29432a7 370 SUPERFAMILY SSF74653 278 359 1.02E-13 T 11-10-2018 APT56_04105 e7476d69c36fa5a53a6321eeb29432a7 370 TIGRFAM TIGR02794 tolA_full: protein TolA 23 358 3.8E-54 T 11-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 APT56_04105 e7476d69c36fa5a53a6321eeb29432a7 370 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 296 356 5.8E-11 T 11-10-2018 IPR006260 TonB/TolA, C-terminal APT56_04105 e7476d69c36fa5a53a6321eeb29432a7 370 Pfam PF13103 TonB C terminal 281 356 1.9E-12 T 11-10-2018 APT56_04105 e7476d69c36fa5a53a6321eeb29432a7 370 Gene3D G3DSA:3.30.1150.10 271 361 2.2E-8 T 11-10-2018 APT56_17245 105548287f22a3e657f17112a4d63465 317 SUPERFAMILY SSF53474 53 315 2.86E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_17245 105548287f22a3e657f17112a4d63465 317 Pfam PF00561 alpha/beta hydrolase fold 68 270 2.6E-7 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_17245 105548287f22a3e657f17112a4d63465 317 Gene3D G3DSA:3.40.50.1820 1 316 4.2E-89 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_15565 5ec1b264db14727ab5c3645bec162689 70 Pfam PF07869 Protein of unknown function (DUF1656) 4 58 1.8E-22 T 11-10-2018 IPR012451 Protein of unknown function DUF1656 APT56_11330 98ddec60c468f3f34d6b4927a5b941aa 322 Pfam PF09828 Chromate resistance exported protein 186 315 8.6E-44 T 11-10-2018 IPR018634 Chromate resistance exported protein APT56_19040 ba2193ac4866e5019c56e64a8cdb0010 438 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 425 3.6E-91 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_19040 ba2193ac4866e5019c56e64a8cdb0010 438 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 432 3.9E-89 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_19040 ba2193ac4866e5019c56e64a8cdb0010 438 PIRSF PIRSF006066 4 438 1.3E-94 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_10870 82038721258773ab600dc6076e8b72dc 413 Gene3D G3DSA:3.50.50.60 4 323 1.3E-128 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10870 82038721258773ab600dc6076e8b72dc 413 Gene3D G3DSA:3.30.9.40 65 272 1.3E-128 T 11-10-2018 APT56_10870 82038721258773ab600dc6076e8b72dc 413 SUPERFAMILY SSF51905 2 357 1.54E-22 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_10870 82038721258773ab600dc6076e8b72dc 413 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 7.5E-5 T 11-10-2018 APT56_10870 82038721258773ab600dc6076e8b72dc 413 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 301 7.5E-5 T 11-10-2018 APT56_10870 82038721258773ab600dc6076e8b72dc 413 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 317 7.5E-5 T 11-10-2018 APT56_00535 37201001d3ec54a075772a31acc204cd 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 15 293 1.7E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_16850 7b378570cc5b240b9bada44356c72d37 452 Pfam PF04775 Acyl-CoA thioester hydrolase/BAAT N-terminal region 15 134 2.6E-31 T 11-10-2018 IPR006862 Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase APT56_16850 7b378570cc5b240b9bada44356c72d37 452 SUPERFAMILY SSF53474 62 428 3.57E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_16850 7b378570cc5b240b9bada44356c72d37 452 Gene3D G3DSA:3.40.50.1820 125 427 5.3E-63 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_16850 7b378570cc5b240b9bada44356c72d37 452 Pfam PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal 199 427 6.1E-57 T 11-10-2018 IPR014940 BAAT/Acyl-CoA thioester hydrolase C-terminal APT56_16850 7b378570cc5b240b9bada44356c72d37 452 PIRSF PIRSF016521 1 434 6.0E-104 T 11-10-2018 IPR016662 Acyl-CoA thioesterase, long chain GO:0006637|GO:0016790 APT56_16850 7b378570cc5b240b9bada44356c72d37 452 Gene3D G3DSA:2.60.40.2240 1 124 7.6E-28 T 11-10-2018 APT56_18290 58a4624ebacc5f3b4ae1492c11606db3 323 Gene3D G3DSA:2.60.120.1440 109 240 7.4E-19 T 11-10-2018 APT56_18290 58a4624ebacc5f3b4ae1492c11606db3 323 Pfam PF04773 FecR protein 119 209 2.7E-18 T 11-10-2018 IPR006860 FecR protein APT56_18290 58a4624ebacc5f3b4ae1492c11606db3 323 Pfam PF16220 Domain of unknown function (DUF4880) 3 42 1.6E-13 T 11-10-2018 IPR032623 FecR, N-terminal APT56_18290 58a4624ebacc5f3b4ae1492c11606db3 323 PIRSF PIRSF018266 1 321 4.2E-80 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_24480 00c68b9b6e1ca0158758e519456419a1 259 Pfam PF02517 CAAX protease self-immunity 96 241 2.1E-8 T 11-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 Pfam PF00813 FliP family 62 254 5.4E-78 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 158 170 7.4E-32 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 248 258 7.4E-32 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 130 144 7.4E-32 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 180 192 7.4E-32 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 58 67 7.4E-32 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 118 130 7.4E-32 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 62 258 2.0E-90 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 187 202 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 208 229 2.6E-63 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 99 118 2.6E-63 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 232 257 2.6E-63 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 187 207 2.6E-63 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 60 79 2.6E-63 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 79 99 2.6E-63 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_12070 e1132d0a5d096ead9c16d0fec9f30b5b 260 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 235 247 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 APT56_00210 712aedc6e684a23a3f42f4599994ad27 156 SUPERFAMILY SSF55729 11 153 6.86E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_00210 712aedc6e684a23a3f42f4599994ad27 156 Gene3D G3DSA:3.40.630.30 3 155 2.7E-27 T 11-10-2018 APT56_00210 712aedc6e684a23a3f42f4599994ad27 156 Pfam PF00583 Acetyltransferase (GNAT) family 77 135 1.4E-11 T 11-10-2018 IPR000182 GNAT domain APT56_06210 b153fe3cbe5c85e625fe4df65028be0d 303 PIRSF PIRSF016660 1 303 2.6E-117 T 11-10-2018 IPR008526 Inner membrane protein YedI APT56_06210 b153fe3cbe5c85e625fe4df65028be0d 303 Pfam PF05661 Protein of unknown function (DUF808) 4 292 1.9E-110 T 11-10-2018 IPR008526 Inner membrane protein YedI APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 249 616 8.7E-166 T 11-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 273 281 - T 11-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 14 617 51.165 T 11-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 Gene3D G3DSA:3.40.449.10 25 248 1.2E-256 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 Gene3D G3DSA:2.170.8.10 61 408 1.2E-256 T 11-10-2018 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 Gene3D G3DSA:3.90.228.20 249 606 1.2E-256 T 11-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 SUPERFAMILY SSF53795 249 616 1.05E-153 T 11-10-2018 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 PIRSF PIRSF001348 7 618 4.1E-279 T 11-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 25 245 7.0E-104 T 11-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 APT56_10855 89d29971dec39a5cdd01c0c4b5b20b44 618 SUPERFAMILY SSF68923 12 248 6.28E-102 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 APT56_11370 6ba17ff1f17b322616a82177e073ddee 266 SUPERFAMILY SSF53187 4 259 1.16E-80 T 11-10-2018 APT56_11370 6ba17ff1f17b322616a82177e073ddee 266 Pfam PF05013 N-formylglutamate amidohydrolase 12 230 2.5E-71 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase APT56_11370 6ba17ff1f17b322616a82177e073ddee 266 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 4 259 2.5E-101 T 11-10-2018 IPR010247 N-formylglutamate deformylase APT56_11370 6ba17ff1f17b322616a82177e073ddee 266 Gene3D G3DSA:3.40.630.40 2 259 5.1E-80 T 11-10-2018 APT56_20275 63fd058970f6544f14507ac2372ff14f 287 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 6 284 17.95 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 APT56_20275 63fd058970f6544f14507ac2372ff14f 287 Pfam PF02673 Bacitracin resistance protein BacA 11 279 8.5E-83 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 APT56_14040 e254071c095722176a653fb18c03d783 311 SUPERFAMILY SSF161098 90 295 1.02E-15 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14040 e254071c095722176a653fb18c03d783 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 311 2.2E-38 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_14040 e254071c095722176a653fb18c03d783 311 Gene3D G3DSA:1.10.3720.10 83 304 1.8E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19170 5b045b12ce32d7c68f3c07801a541be5 321 Pfam PF04773 FecR protein 121 209 1.2E-10 T 11-10-2018 IPR006860 FecR protein APT56_19170 5b045b12ce32d7c68f3c07801a541be5 321 PIRSF PIRSF018266 10 321 4.6E-63 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_19170 5b045b12ce32d7c68f3c07801a541be5 321 Gene3D G3DSA:2.60.120.1440 120 246 2.2E-5 T 11-10-2018 APT56_19170 5b045b12ce32d7c68f3c07801a541be5 321 Pfam PF16220 Domain of unknown function (DUF4880) 20 59 4.2E-11 T 11-10-2018 IPR032623 FecR, N-terminal APT56_27290 f549cf0028653e6016693049cbe16a7c 217 Gene3D G3DSA:3.40.50.1820 1 217 3.5E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_27290 f549cf0028653e6016693049cbe16a7c 217 Pfam PF12695 Alpha/beta hydrolase family 98 202 2.3E-6 T 11-10-2018 IPR029059 Alpha/beta hydrolase fold-5 APT56_27290 f549cf0028653e6016693049cbe16a7c 217 SUPERFAMILY SSF53474 2 212 1.62E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_06425 52adb51b8e609753e9b5e74e4d901a4b 357 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 233 246 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06425 52adb51b8e609753e9b5e74e4d901a4b 357 Pfam PF00146 NADH dehydrogenase 27 345 2.3E-125 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06425 52adb51b8e609753e9b5e74e4d901a4b 357 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 21 352 24.773 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_09430 81acf0b0edb6667be8ec584c845b8b7b 446 Gene3D G3DSA:3.40.190.10 41 397 3.2E-81 T 11-10-2018 APT56_09430 81acf0b0edb6667be8ec584c845b8b7b 446 Gene3D G3DSA:3.40.190.10 156 437 3.2E-81 T 11-10-2018 APT56_09430 81acf0b0edb6667be8ec584c845b8b7b 446 Pfam PF13416 Bacterial extracellular solute-binding protein 55 370 6.0E-30 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_09430 81acf0b0edb6667be8ec584c845b8b7b 446 SUPERFAMILY SSF53850 37 439 2.17E-46 T 11-10-2018 APT56_26790 3348637e167b8d3ed7886990e6d892ef 511 Pfam PF01425 Amidase 32 489 3.7E-144 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_26790 3348637e167b8d3ed7886990e6d892ef 511 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 16 500 94.475 T 11-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_26790 3348637e167b8d3ed7886990e6d892ef 511 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 17 499 4.9E-162 T 11-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_26790 3348637e167b8d3ed7886990e6d892ef 511 Gene3D G3DSA:3.90.1300.10 11 509 2.3E-186 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_26790 3348637e167b8d3ed7886990e6d892ef 511 SUPERFAMILY SSF75304 12 506 4.06E-152 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_26790 3348637e167b8d3ed7886990e6d892ef 511 ProSitePatterns PS00571 Amidases signature. 155 186 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT56_04425 407d8b7f905bc56541c999abc2a12ddf 203 SUPERFAMILY SSF110857 33 145 9.03E-12 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily APT56_04425 407d8b7f905bc56541c999abc2a12ddf 203 Pfam PF04752 ChaC-like protein 33 196 4.1E-43 T 11-10-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 KEGG: 00480+4.3.2.7|MetaCyc: PWY-7942|Reactome: R-HSA-174403 APT56_04425 407d8b7f905bc56541c999abc2a12ddf 203 Gene3D G3DSA:3.10.490.10 28 198 2.1E-10 T 11-10-2018 APT56_27415 fbe3ecb8e5ae053e18bb407c83d8193a 293 Gene3D G3DSA:3.90.550.10 2 292 1.9E-87 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_27415 fbe3ecb8e5ae053e18bb407c83d8193a 293 Pfam PF00483 Nucleotidyl transferase 4 240 3.6E-69 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT56_27415 fbe3ecb8e5ae053e18bb407c83d8193a 293 SUPERFAMILY SSF53448 3 288 5.63E-92 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_27415 fbe3ecb8e5ae053e18bb407c83d8193a 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 4 288 4.4E-151 T 11-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 APT56_22400 d96a1520946554285f4c4d12f5ccdeb0 296 PIRSF PIRSF011468 8 296 2.7E-160 T 11-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_22400 d96a1520946554285f4c4d12f5ccdeb0 296 Pfam PF06007 Phosphonate metabolism protein PhnJ 16 287 3.1E-147 T 11-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 6 414 52.17 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 Gene3D G3DSA:3.40.50.300 57 314 4.0E-108 T 11-10-2018 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 Gene3D G3DSA:1.10.8.60 315 422 2.6E-37 T 11-10-2018 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 9 411 6.0E-198 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 Gene3D G3DSA:3.30.50.30 3 52 1.1E-23 T 11-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 Pfam PF06689 ClpX C4-type zinc finger 13 50 4.7E-19 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 SUPERFAMILY SSF52540 62 397 3.8E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 SMART SM00382 112 332 8.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 SMART SM00994 12 51 1.7E-23 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 SUPERFAMILY SSF57716 13 48 3.85E-11 T 11-10-2018 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 Pfam PF07724 AAA domain (Cdc48 subfamily) 113 309 3.2E-47 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 316 393 4.8E-17 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_17725 95a3eb39e76612978a3bad9f0c9e56a4 432 SMART SM01086 316 411 2.4E-33 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APT56_09110 29c6c804d7e674e1c4e85c0f1845d8ef 323 SUPERFAMILY SSF53756 9 320 5.34E-45 T 11-10-2018 APT56_09110 29c6c804d7e674e1c4e85c0f1845d8ef 323 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 71 315 4.5E-50 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APT56_09110 29c6c804d7e674e1c4e85c0f1845d8ef 323 Gene3D G3DSA:3.40.50.2000 7 143 8.7E-18 T 11-10-2018 APT56_09110 29c6c804d7e674e1c4e85c0f1845d8ef 323 Gene3D G3DSA:3.40.50.2000 170 321 4.3E-24 T 11-10-2018 APT56_25985 975a0ba216bfb82eced891f7e5e12a0b 123 Pfam PF07769 psiF repeat 48 79 1.1E-15 T 11-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat APT56_25985 975a0ba216bfb82eced891f7e5e12a0b 123 Pfam PF07769 psiF repeat 90 122 6.2E-18 T 11-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat APT56_15400 c8621ff5c87d842073a8e93ad60edfb5 216 SUPERFAMILY SSF51161 20 206 3.05E-45 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APT56_15400 c8621ff5c87d842073a8e93ad60edfb5 216 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 119 147 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APT56_15400 c8621ff5c87d842073a8e93ad60edfb5 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 1.8E-9 T 11-10-2018 IPR001451 Hexapeptide repeat APT56_15400 c8621ff5c87d842073a8e93ad60edfb5 216 Gene3D G3DSA:2.160.10.10 1 211 1.2E-74 T 11-10-2018 APT56_10445 cf834520bd8bdd554a06ea4c2afba1af 176 SUPERFAMILY SSF82784 21 169 3.88E-32 T 11-10-2018 IPR036102 OsmC/Ohr superfamily APT56_10445 cf834520bd8bdd554a06ea4c2afba1af 176 Pfam PF02566 OsmC-like protein 63 166 2.7E-17 T 11-10-2018 IPR003718 OsmC/Ohr family APT56_10445 cf834520bd8bdd554a06ea4c2afba1af 176 Gene3D G3DSA:3.30.300.20 18 173 5.4E-31 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_15425 78da763e3d8048af0cb97589d698a5b6 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 259 4.0E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_15425 78da763e3d8048af0cb97589d698a5b6 270 Gene3D G3DSA:1.10.3720.10 2 263 1.1E-53 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15425 78da763e3d8048af0cb97589d698a5b6 270 SUPERFAMILY SSF161098 6 269 7.46E-64 T 11-10-2018 IPR035906 MetI-like superfamily APT56_16865 559cad267a20110ec0b634db3cea23d9 330 SUPERFAMILY SSF53850 118 285 1.69E-8 T 11-10-2018 APT56_16865 559cad267a20110ec0b634db3cea23d9 330 Gene3D G3DSA:3.40.190.10 132 255 5.3E-113 T 11-10-2018 APT56_16865 559cad267a20110ec0b634db3cea23d9 330 Gene3D G3DSA:3.40.190.150 34 320 5.3E-113 T 11-10-2018 APT56_16865 559cad267a20110ec0b634db3cea23d9 330 PIRSF PIRSF017082 1 330 1.7E-79 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_16865 559cad267a20110ec0b634db3cea23d9 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 326 5.9E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_07930 ac8a1e9b675f0eb04058a45c9d9675d9 130 SUPERFAMILY SSF55331 2 125 6.37E-21 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_07930 ac8a1e9b675f0eb04058a45c9d9675d9 130 Gene3D G3DSA:3.30.429.10 1 62 7.2E-9 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_07930 ac8a1e9b675f0eb04058a45c9d9675d9 130 Gene3D G3DSA:3.30.429.10 67 129 9.5E-10 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_14470 84190d65181e6f576da747f06c8d21ec 288 Pfam PF13503 Domain of unknown function (DUF4123) 34 158 3.5E-18 T 11-10-2018 IPR025391 Domain of unknown function DUF4123 APT56_15335 0b870cfb704a090f882dfdb2e10bc557 74 Gene3D G3DSA:3.10.290.10 2 73 1.9E-21 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APT56_15335 0b870cfb704a090f882dfdb2e10bc557 74 SUPERFAMILY SSF55174 6 72 1.31E-16 T 11-10-2018 APT56_15335 0b870cfb704a090f882dfdb2e10bc557 74 Pfam PF13275 S4 domain 13 71 6.0E-21 T 11-10-2018 APT56_20835 7658326c875ccda969999bb5a5bfd68a 178 Gene3D G3DSA:3.40.30.10 22 178 2.5E-51 T 11-10-2018 APT56_20835 7658326c875ccda969999bb5a5bfd68a 178 SUPERFAMILY SSF52833 34 173 7.82E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_20835 7658326c875ccda969999bb5a5bfd68a 178 Pfam PF08534 Redoxin 33 166 6.4E-14 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APT56_25235 d6112fd2df769500fcb23dd5dc64e2fc 148 Pfam PF01476 LysM domain 95 145 1.4E-12 T 11-10-2018 IPR018392 LysM domain APT56_25235 d6112fd2df769500fcb23dd5dc64e2fc 148 Gene3D G3DSA:3.10.350.10 93 144 1.6E-14 T 11-10-2018 IPR036779 LysM domain superfamily APT56_25235 d6112fd2df769500fcb23dd5dc64e2fc 148 SUPERFAMILY SSF54106 93 145 8.76E-8 T 11-10-2018 APT56_25235 d6112fd2df769500fcb23dd5dc64e2fc 148 SMART SM00257 94 145 4.7E-10 T 11-10-2018 IPR018392 LysM domain APT56_25235 d6112fd2df769500fcb23dd5dc64e2fc 148 Pfam PF04972 BON domain 27 86 7.4E-12 T 11-10-2018 IPR007055 BON domain APT56_06760 4f1231e1d358d3d2f132e7b95c9eedb6 200 SUPERFAMILY SSF52972 5 186 6.21E-52 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APT56_06760 4f1231e1d358d3d2f132e7b95c9eedb6 200 TIGRFAM TIGR00172 maf: septum formation protein Maf 5 185 5.8E-38 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APT56_06760 4f1231e1d358d3d2f132e7b95c9eedb6 200 Pfam PF02545 Maf-like protein 7 186 6.0E-40 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APT56_06760 4f1231e1d358d3d2f132e7b95c9eedb6 200 PIRSF PIRSF006305 1 194 1.8E-45 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APT56_06760 4f1231e1d358d3d2f132e7b95c9eedb6 200 Hamap MF_00528 Septum formation protein Maf [maf]. 6 192 27.687 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APT56_06760 4f1231e1d358d3d2f132e7b95c9eedb6 200 Gene3D G3DSA:3.90.950.10 5 195 2.2E-51 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APT56_18520 db2d55bc0ab3b7f2d38d9e705264c419 111 SUPERFAMILY SSF54292 4 89 1.28E-26 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_18520 db2d55bc0ab3b7f2d38d9e705264c419 111 Gene3D G3DSA:3.10.20.30 1 92 3.0E-23 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_18520 db2d55bc0ab3b7f2d38d9e705264c419 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 81 3.8E-14 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_00665 497df454f290c0da6b3e73401acf3bf4 319 Gene3D G3DSA:3.40.190.10 31 316 5.7E-104 T 11-10-2018 APT56_00665 497df454f290c0da6b3e73401acf3bf4 319 SUPERFAMILY SSF53850 26 318 3.87E-74 T 11-10-2018 APT56_00665 497df454f290c0da6b3e73401acf3bf4 319 Gene3D G3DSA:3.40.190.10 115 251 5.7E-104 T 11-10-2018 APT56_00665 497df454f290c0da6b3e73401acf3bf4 319 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 7 316 5.0E-102 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family APT56_00665 497df454f290c0da6b3e73401acf3bf4 319 Pfam PF16868 NMT1-like family 31 316 2.5E-88 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 111 129 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 129 148 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 227 243 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 420 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 256 275 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 350 368 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 429 446 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 374 392 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 42 67 7.1E-38 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 Pfam PF01019 Gamma-glutamyltranspeptidase 35 529 1.1E-151 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 SUPERFAMILY SSF56235 6 534 8.49E-171 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_04175 e4b9c4403662889734df91649310d248 534 Gene3D G3DSA:3.60.20.40 355 534 3.6E-65 T 11-10-2018 APT56_04175 e4b9c4403662889734df91649310d248 534 Gene3D G3DSA:1.10.246.130 243 354 4.0E-27 T 11-10-2018 APT56_23330 48041ef2afc07c8c190304d5cf1e5869 204 Gene3D G3DSA:1.20.120.80 19 204 1.1E-57 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23330 48041ef2afc07c8c190304d5cf1e5869 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 9.6E-85 T 11-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 APT56_23330 48041ef2afc07c8c190304d5cf1e5869 204 Pfam PF00510 Cytochrome c oxidase subunit III 26 202 6.6E-15 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23330 48041ef2afc07c8c190304d5cf1e5869 204 SUPERFAMILY SSF81452 7 202 2.88E-57 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_10245 8746a59c8e12d45f34813ffd6e18a146 483 Pfam PF04865 Baseplate J-like protein 81 185 1.5E-4 T 11-10-2018 IPR006949 Baseplate protein J-like APT56_20070 cdb98464e8f4ff6357c15d4ef58a264d 329 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 20 303 4.0E-103 T 11-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 APT56_20070 cdb98464e8f4ff6357c15d4ef58a264d 329 Pfam PF03812 2-keto-3-deoxygluconate permease 1 303 9.4E-106 T 11-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 APT56_20260 0ddd9d48f7d0fca2f9aed7b4156459be 227 Gene3D G3DSA:1.25.40.10 51 206 1.3E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_20260 0ddd9d48f7d0fca2f9aed7b4156459be 227 SUPERFAMILY SSF48452 108 202 3.6E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_20260 0ddd9d48f7d0fca2f9aed7b4156459be 227 SMART SM00028 147 180 4.2E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_20260 0ddd9d48f7d0fca2f9aed7b4156459be 227 SMART SM00028 113 146 240.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APT56_10505 0058665f2322c88489ada6a053207f65 148 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 2 136 1.2E-24 T 11-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 APT56_10505 0058665f2322c88489ada6a053207f65 148 ProDom PD460230 MEMBRANE STORAGE INNER HAEMIN SYSTEM HMSS PGA BIOFILM PGAD TRANSMEMBRANE 1 110 7.0E-5 T 11-10-2018 APT56_10505 0058665f2322c88489ada6a053207f65 148 Pfam PF13994 PgaD-like protein 1 132 1.4E-29 T 11-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 APT56_27840 2ac68f37502901b673b9d1024c496f3a 205 SUPERFAMILY SSF52166 4 205 2.35E-69 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 APT56_27840 2ac68f37502901b673b9d1024c496f3a 205 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 7 205 31.7 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27840 2ac68f37502901b673b9d1024c496f3a 205 Pfam PF00573 Ribosomal protein L4/L1 family 18 202 2.7E-63 T 11-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 APT56_27840 2ac68f37502901b673b9d1024c496f3a 205 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 202 1.5E-70 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27840 2ac68f37502901b673b9d1024c496f3a 205 Gene3D G3DSA:3.40.1370.10 5 205 5.9E-67 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 APT56_04940 0d2d4c958fb43d83780150e705ac80df 209 Gene3D G3DSA:2.30.110.10 1 209 1.4E-89 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_04940 0d2d4c958fb43d83780150e705ac80df 209 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 179 192 - T 11-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT56_04940 0d2d4c958fb43d83780150e705ac80df 209 PIRSF PIRSF000190 1 209 3.6E-83 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT56_04940 0d2d4c958fb43d83780150e705ac80df 209 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 2 209 4.4E-86 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT56_04940 0d2d4c958fb43d83780150e705ac80df 209 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 169 209 1.3E-21 T 11-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT56_04940 0d2d4c958fb43d83780150e705ac80df 209 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 9 209 39.134 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT56_04940 0d2d4c958fb43d83780150e705ac80df 209 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 32 118 8.4E-28 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT56_04940 0d2d4c958fb43d83780150e705ac80df 209 SUPERFAMILY SSF50475 6 209 1.81E-68 T 11-10-2018 APT56_06620 40e962830c0b13e49998de8389b3e9c6 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 302 6.3E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_19820 87be3a90f5a1a56b602d1da8810d1042 179 Gene3D G3DSA:1.10.10.10 4 166 2.7E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_19820 87be3a90f5a1a56b602d1da8810d1042 179 Pfam PF12802 MarR family 55 113 4.5E-9 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_19820 87be3a90f5a1a56b602d1da8810d1042 179 SMART SM00347 50 150 7.1E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_19820 87be3a90f5a1a56b602d1da8810d1042 179 SUPERFAMILY SSF46785 28 164 5.71E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18885 191a1c8538f92afd675d51b426a15c54 141 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 141 3.4E-17 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 APT56_18885 191a1c8538f92afd675d51b426a15c54 141 PIRSF PIRSF004638 1 141 1.4E-23 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 APT56_07430 dce0f73e1abde4a2a6931e849c1bd8f1 238 SUPERFAMILY SSF50800 2 227 5.75E-78 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily APT56_07430 dce0f73e1abde4a2a6931e849c1bd8f1 238 Pfam PF03475 3-alpha domain 172 211 3.9E-9 T 11-10-2018 IPR005163 3-alpha domain APT56_07430 dce0f73e1abde4a2a6931e849c1bd8f1 238 Gene3D G3DSA:2.40.33.20 2 234 5.4E-83 T 11-10-2018 APT56_07430 dce0f73e1abde4a2a6931e849c1bd8f1 238 Pfam PF03473 MOSC domain 48 162 4.8E-26 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 APT56_22225 344f61b4d35c5cbe7fa3a5f0a0fe43f7 257 SMART SM00382 30 224 6.9E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22225 344f61b4d35c5cbe7fa3a5f0a0fe43f7 257 Pfam PF00005 ABC transporter 22 176 2.1E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_22225 344f61b4d35c5cbe7fa3a5f0a0fe43f7 257 Gene3D G3DSA:3.40.50.300 5 251 4.4E-56 T 11-10-2018 APT56_22225 344f61b4d35c5cbe7fa3a5f0a0fe43f7 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 246 3.7E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_22225 344f61b4d35c5cbe7fa3a5f0a0fe43f7 257 SUPERFAMILY SSF52540 4 247 5.76E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_21110 b3382d4e2056823be2b1c2350095856f 254 Pfam PF12697 Alpha/beta hydrolase family 15 243 3.3E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_21110 b3382d4e2056823be2b1c2350095856f 254 SUPERFAMILY SSF53474 6 249 2.26E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_21110 b3382d4e2056823be2b1c2350095856f 254 Gene3D G3DSA:3.40.50.1820 4 249 2.0E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_05635 e7d6916c723e817b11cb969803c9198c 293 SMART SM00382 37 195 1.3E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05635 e7d6916c723e817b11cb969803c9198c 293 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 41 187 1.3E-14 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APT56_05635 e7d6916c723e817b11cb969803c9198c 293 Gene3D G3DSA:3.40.50.300 13 216 6.6E-28 T 11-10-2018 APT56_05635 e7d6916c723e817b11cb969803c9198c 293 SUPERFAMILY SSF52540 19 248 2.53E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_23040 91a9d96a162058dd25ca8d99beb6fec1 154 Gene3D G3DSA:3.40.630.30 2 140 2.3E-22 T 11-10-2018 APT56_23040 91a9d96a162058dd25ca8d99beb6fec1 154 SUPERFAMILY SSF55729 5 135 1.43E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_23040 91a9d96a162058dd25ca8d99beb6fec1 154 Pfam PF13673 Acetyltransferase (GNAT) domain 61 139 1.4E-10 T 11-10-2018 IPR000182 GNAT domain APT56_09365 3f91f6dc13b176d2e359ac71fe6349e3 420 Pfam PF04235 Protein of unknown function (DUF418) 246 406 1.2E-43 T 11-10-2018 IPR007349 Domain of unknown function DUF418 APT56_14625 66685da50d0804b45282d5f9ab3315e8 283 Gene3D G3DSA:1.10.3720.10 1 276 9.1E-56 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14625 66685da50d0804b45282d5f9ab3315e8 283 SUPERFAMILY SSF161098 4 279 1.96E-59 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14625 66685da50d0804b45282d5f9ab3315e8 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 278 1.1E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_24740 a834da71a47b94faa050fc86dfbe248e 301 Gene3D G3DSA:1.10.3720.10 90 294 3.4E-17 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24740 a834da71a47b94faa050fc86dfbe248e 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 298 3.4E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_24740 a834da71a47b94faa050fc86dfbe248e 301 SUPERFAMILY SSF161098 91 279 1.28E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24740 a834da71a47b94faa050fc86dfbe248e 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 66 2.0E-5 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_04810 a770cd9a9139c3b128a1fd10fa4c2cdf 277 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 7 214 1.9E-34 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 APT56_04810 a770cd9a9139c3b128a1fd10fa4c2cdf 277 SUPERFAMILY SSF51621 3 226 5.58E-62 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_04810 a770cd9a9139c3b128a1fd10fa4c2cdf 277 Gene3D G3DSA:3.20.20.60 1 276 1.2E-83 T 11-10-2018 APT56_04810 a770cd9a9139c3b128a1fd10fa4c2cdf 277 PIRSF PIRSF015582 1 277 7.1E-84 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 16 263 2.2E-89 T 11-10-2018 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 SUPERFAMILY SSF56655 16 264 2.23E-71 T 11-10-2018 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 89 102 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 Pfam PF00459 Inositol monophosphatase family 16 259 3.3E-51 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 Gene3D G3DSA:3.40.190.80 149 264 4.5E-36 T 11-10-2018 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 Gene3D G3DSA:3.30.540.10 2 147 8.0E-40 T 11-10-2018 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 69 85 4.3E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 138 161 4.3E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 181 202 4.3E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 4.3E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 47 67 4.3E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_00085 f96b07b33fbbd284c5fc9d652b24c229 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 4.3E-24 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APT56_02620 13bd9c4546eed2a106412ae5aa450b88 228 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 219 4.4E-100 T 11-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 APT56_02620 13bd9c4546eed2a106412ae5aa450b88 228 SMART SM00862 144 219 8.8E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_02620 13bd9c4546eed2a106412ae5aa450b88 228 SUPERFAMILY SSF52172 1 177 3.05E-40 T 11-10-2018 IPR011006 CheY-like superfamily APT56_02620 13bd9c4546eed2a106412ae5aa450b88 228 Gene3D G3DSA:3.40.50.2300 1 120 3.2E-38 T 11-10-2018 APT56_02620 13bd9c4546eed2a106412ae5aa450b88 228 Gene3D G3DSA:1.10.10.10 122 226 7.8E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02620 13bd9c4546eed2a106412ae5aa450b88 228 Pfam PF00072 Response regulator receiver domain 3 112 5.6E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_02620 13bd9c4546eed2a106412ae5aa450b88 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 219 1.4E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_02620 13bd9c4546eed2a106412ae5aa450b88 228 SMART SM00448 1 111 3.1E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_24855 95f08f074e05dad09ac06296dc0590db 264 Pfam PF03724 META domain 44 162 1.3E-19 T 11-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ APT56_24855 95f08f074e05dad09ac06296dc0590db 264 Pfam PF14302 Domain of unknown function (DUF4377) 184 259 3.9E-23 T 11-10-2018 IPR025485 Domain of unknown function DUF4377 APT56_24855 95f08f074e05dad09ac06296dc0590db 264 Gene3D G3DSA:2.40.128.270 40 170 1.8E-31 T 11-10-2018 IPR038670 HslJ-like superfamily APT56_12390 de29e109466fa794cda640618b414242 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 134 1.2E-34 T 11-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 APT56_12390 de29e109466fa794cda640618b414242 144 SUPERFAMILY SSF55961 1 143 3.42E-38 T 11-10-2018 APT56_12390 de29e109466fa794cda640618b414242 144 Gene3D G3DSA:3.30.530.20 1 144 1.8E-39 T 11-10-2018 IPR023393 START-like domain superfamily APT56_22585 883865145205fd4ad92da85beefe7cb4 520 Pfam PF01740 STAS domain 395 503 3.3E-13 T 11-10-2018 IPR002645 STAS domain APT56_22585 883865145205fd4ad92da85beefe7cb4 520 Pfam PF00916 Sulfate permease family 2 338 3.7E-71 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 APT56_22585 883865145205fd4ad92da85beefe7cb4 520 Gene3D G3DSA:3.30.750.24 390 512 6.7E-26 T 11-10-2018 IPR036513 STAS domain superfamily APT56_22585 883865145205fd4ad92da85beefe7cb4 520 SUPERFAMILY SSF52091 394 508 1.02E-14 T 11-10-2018 IPR036513 STAS domain superfamily APT56_01950 f2c26e533ccbe5069457543d159fc6b6 486 Gene3D G3DSA:3.40.640.10 95 359 7.9E-155 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_01950 f2c26e533ccbe5069457543d159fc6b6 486 Pfam PF03841 L-seryl-tRNA selenium transferase 83 453 1.2E-161 T 11-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 APT56_01950 f2c26e533ccbe5069457543d159fc6b6 486 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 9 466 1.1E-179 T 11-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 APT56_01950 f2c26e533ccbe5069457543d159fc6b6 486 SUPERFAMILY SSF53383 75 379 5.04E-44 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_01950 f2c26e533ccbe5069457543d159fc6b6 486 Gene3D G3DSA:3.90.1150.110 10 457 7.9E-155 T 11-10-2018 APT56_01950 f2c26e533ccbe5069457543d159fc6b6 486 Pfam PF12390 Selenocysteine synthase N terminal 9 46 6.3E-7 T 11-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 APT56_01950 f2c26e533ccbe5069457543d159fc6b6 486 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 471 235.945 T 11-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 APT56_24025 4f49308375c5147656abb4f7fcd4e5c2 172 Gene3D G3DSA:2.40.128.20 15 171 1.2E-31 T 11-10-2018 IPR012674 Calycin APT56_24025 4f49308375c5147656abb4f7fcd4e5c2 172 ProSitePatterns PS00213 Lipocalin signature. 29 40 - T 11-10-2018 IPR022272 Lipocalin family conserved site APT56_24025 4f49308375c5147656abb4f7fcd4e5c2 172 SUPERFAMILY SSF50814 11 170 5.81E-32 T 11-10-2018 IPR012674 Calycin APT56_24025 4f49308375c5147656abb4f7fcd4e5c2 172 PIRSF PIRSF036893 1 170 1.2E-32 T 11-10-2018 IPR022271 Lipocalin, ApoD type APT56_24025 4f49308375c5147656abb4f7fcd4e5c2 172 Pfam PF08212 Lipocalin-like domain 28 161 6.3E-36 T 11-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain APT56_14590 bde5601b79e5bc34eb356a57306bb849 411 Pfam PF11862 Domain of unknown function (DUF3382) 4 97 4.0E-25 T 11-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal APT56_14590 bde5601b79e5bc34eb356a57306bb849 411 Pfam PF02653 Branched-chain amino acid transport system / permease component 107 392 1.6E-51 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_20560 27fda4a984aa1457441f60c8511d5487 407 Pfam PF11922 Domain of unknown function (DUF3440) 245 350 5.3E-29 T 11-10-2018 IPR021845 Protein of unknown function DUF3440 APT56_20560 27fda4a984aa1457441f60c8511d5487 407 Gene3D G3DSA:3.40.50.620 4 251 6.8E-32 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_20560 27fda4a984aa1457441f60c8511d5487 407 SUPERFAMILY SSF52402 3 241 4.19E-38 T 11-10-2018 APT56_20560 27fda4a984aa1457441f60c8511d5487 407 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 156 241 6.6E-7 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 APT56_20560 27fda4a984aa1457441f60c8511d5487 407 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 82 3.4E-7 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 APT56_16555 9f0dc00e57aec1fe59e6b5215fa47b44 237 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 56 209 4.9E-38 T 11-10-2018 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 APT56_18810 9750c9083f728ed5c80ae30d8a0f0a14 168 SUPERFAMILY SSF55729 1 143 6.92E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_18810 9750c9083f728ed5c80ae30d8a0f0a14 168 Gene3D G3DSA:3.40.630.30 1 163 6.3E-49 T 11-10-2018 APT56_18810 9750c9083f728ed5c80ae30d8a0f0a14 168 Pfam PF13527 Acetyltransferase (GNAT) domain 4 127 2.0E-12 T 11-10-2018 APT56_27790 e5ac2969eb47e908881c4fd36c881106 355 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 318 2.2E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_06040 86a174df7f33fb92cc646875b58fb032 702 Gene3D G3DSA:2.120.10.30 526 701 3.1E-5 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_06040 86a174df7f33fb92cc646875b58fb032 702 Pfam PF05787 Bacterial protein of unknown function (DUF839) 84 658 3.4E-166 T 11-10-2018 IPR008557 Protein of unknown function DUF839 APT56_06040 86a174df7f33fb92cc646875b58fb032 702 SUPERFAMILY SSF63829 339 658 8.5E-11 T 11-10-2018 APT56_21770 f91cec1c8a3d39fc51efb89c90c1a0d3 252 Pfam PF06912 Protein of unknown function (DUF1275) 22 238 1.3E-33 T 11-10-2018 IPR010699 Protein of unknown function DUF1275 APT56_22565 a67770a7422d6b632558c9d796545d35 826 Pfam PF11339 Protein of unknown function (DUF3141) 26 603 1.0E-293 T 11-10-2018 IPR024501 Protein of unknown function DUF3141 APT56_22565 a67770a7422d6b632558c9d796545d35 826 SUPERFAMILY SSF53474 55 380 1.19E-24 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_01235 ce9ce55051541d830c75e3de99a612f5 426 Gene3D G3DSA:3.65.10.10 6 413 1.7E-162 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APT56_01235 ce9ce55051541d830c75e3de99a612f5 426 SUPERFAMILY SSF55205 1 416 1.23E-137 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 APT56_01235 ce9ce55051541d830c75e3de99a612f5 426 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 43.606 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_01235 ce9ce55051541d830c75e3de99a612f5 426 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 4.6E-172 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APT56_01235 ce9ce55051541d830c75e3de99a612f5 426 Gene3D G3DSA:3.65.10.10 21 230 1.7E-162 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APT56_01235 ce9ce55051541d830c75e3de99a612f5 426 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 405 8.2E-105 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 APT56_00920 b5a30ddd32bec58da4d89a98d11187d6 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 256 1.6E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00920 b5a30ddd32bec58da4d89a98d11187d6 266 Gene3D G3DSA:1.10.3720.10 5 258 3.3E-57 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00920 b5a30ddd32bec58da4d89a98d11187d6 266 SUPERFAMILY SSF161098 7 265 2.49E-60 T 11-10-2018 IPR035906 MetI-like superfamily APT56_25190 b95552a66f5064c1ebab4680db123e9f 422 Pfam PF07804 HipA-like C-terminal domain 184 397 2.7E-47 T 11-10-2018 IPR012893 HipA-like, C-terminal APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 34 49 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 134 152 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 200 218 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 95 114 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 117 134 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 49 64 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 264 276 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 69 84 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 PRINTS PR01010 Flagellar P-ring protein signature 174 192 1.0E-84 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 Hamap MF_00416 Flagellar P-ring protein [flgI]. 14 378 38.191 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_12015 6b5b88446929e0c9eb1dd4e21493cce4 378 Pfam PF02119 Flagellar P-ring protein 34 377 1.3E-137 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 APT56_03425 3318445742ee47db04cf3c3866e85c51 270 SMART SM00382 45 226 1.7E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_03425 3318445742ee47db04cf3c3866e85c51 270 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_03425 3318445742ee47db04cf3c3866e85c51 270 Gene3D G3DSA:3.40.50.300 15 250 6.2E-68 T 11-10-2018 APT56_03425 3318445742ee47db04cf3c3866e85c51 270 SUPERFAMILY SSF52540 17 245 1.82E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03425 3318445742ee47db04cf3c3866e85c51 270 Pfam PF00005 ABC transporter 36 175 4.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_02895 7bcace2087abc8877fe1134eac6a660c 137 Gene3D G3DSA:1.10.10.10 7 70 2.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02895 7bcace2087abc8877fe1134eac6a660c 137 Pfam PF00196 Bacterial regulatory proteins, luxR family 14 67 2.2E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02895 7bcace2087abc8877fe1134eac6a660c 137 SUPERFAMILY SSF46894 4 75 2.52E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_02895 7bcace2087abc8877fe1134eac6a660c 137 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 15 29 2.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02895 7bcace2087abc8877fe1134eac6a660c 137 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 29 45 2.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02895 7bcace2087abc8877fe1134eac6a660c 137 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 45 57 2.0E-11 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02895 7bcace2087abc8877fe1134eac6a660c 137 SMART SM00421 12 69 5.9E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_02895 7bcace2087abc8877fe1134eac6a660c 137 ProSitePatterns PS00622 LuxR-type HTH domain signature. 29 56 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_01915 3da1704a361c69e86f271b57cdb3d7d9 165 Pfam PF03061 Thioesterase superfamily 24 97 2.8E-17 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_01915 3da1704a361c69e86f271b57cdb3d7d9 165 SUPERFAMILY SSF54637 7 156 8.91E-45 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_01915 3da1704a361c69e86f271b57cdb3d7d9 165 Gene3D G3DSA:3.10.129.10 2 154 5.8E-56 T 11-10-2018 APT56_18575 050c56a1c6a9d7f46f7feee9438a55b6 74 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 70 2.0E-22 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor APT56_18575 050c56a1c6a9d7f46f7feee9438a55b6 74 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 2 67 3.5E-31 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor APT56_12255 48c91b655633972d29163924c9287f89 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 26.944 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 APT56_12255 48c91b655633972d29163924c9287f89 186 Gene3D G3DSA:1.10.132.20 13 183 5.2E-64 T 11-10-2018 APT56_12255 48c91b655633972d29163924c9287f89 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 12 186 1.5E-68 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 APT56_12255 48c91b655633972d29163924c9287f89 186 SUPERFAMILY SSF55194 5 185 4.45E-69 T 11-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 APT56_12255 48c91b655633972d29163924c9287f89 186 Pfam PF01765 Ribosome recycling factor 21 184 6.1E-62 T 11-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 APT56_12255 48c91b655633972d29163924c9287f89 186 Gene3D G3DSA:3.30.1360.40 32 106 5.2E-64 T 11-10-2018 APT56_17025 102c6f4fbe7a2880cf1d9dfcc1d9f30c 407 Gene3D G3DSA:3.30.1540.10 243 334 8.0E-144 T 11-10-2018 APT56_17025 102c6f4fbe7a2880cf1d9dfcc1d9f30c 407 Pfam PF02515 CoA-transferase family III 5 383 2.1E-129 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_17025 102c6f4fbe7a2880cf1d9dfcc1d9f30c 407 SUPERFAMILY SSF89796 3 407 1.18E-141 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_17025 102c6f4fbe7a2880cf1d9dfcc1d9f30c 407 Gene3D G3DSA:3.40.50.10540 5 401 8.0E-144 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_25370 44218f2c610d2d7e3b8276d793e6a126 486 Pfam PF12679 ABC-2 family transporter protein 12 479 1.9E-23 T 11-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 APT56_00695 e9a8a585d9f81ddaf43d290dc22e9ca7 321 Gene3D G3DSA:3.40.190.10 123 246 1.2E-106 T 11-10-2018 APT56_00695 e9a8a585d9f81ddaf43d290dc22e9ca7 321 PIRSF PIRSF017082 1 320 8.6E-74 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00695 e9a8a585d9f81ddaf43d290dc22e9ca7 321 SUPERFAMILY SSF53850 85 284 1.63E-10 T 11-10-2018 APT56_00695 e9a8a585d9f81ddaf43d290dc22e9ca7 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 316 4.0E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_00695 e9a8a585d9f81ddaf43d290dc22e9ca7 321 Gene3D G3DSA:3.40.190.150 26 311 1.2E-106 T 11-10-2018 APT56_13720 ea60be0377465da1aff31b0001e2d0a8 168 SUPERFAMILY SSF47240 1 153 1.27E-55 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_13720 ea60be0377465da1aff31b0001e2d0a8 168 Pfam PF05974 Domain of unknown function (DUF892) 5 162 3.3E-60 T 11-10-2018 IPR010287 Domain of unknown function DUF892 APT56_13720 ea60be0377465da1aff31b0001e2d0a8 168 Gene3D G3DSA:1.20.1260.10 1 166 1.5E-66 T 11-10-2018 IPR012347 Ferritin-like APT56_24440 36ac77dd55007c3d708f742902df61c1 127 SUPERFAMILY SSF141673 6 125 8.37E-28 T 11-10-2018 APT56_24440 36ac77dd55007c3d708f742902df61c1 127 Pfam PF03476 MOSC N-terminal beta barrel domain 21 109 1.4E-10 T 11-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 APT56_26370 0056a3f0938ba860b6e626fec701407c 396 SMART SM00267 206 378 6.4E-53 T 11-10-2018 IPR000160 GGDEF domain APT56_26370 0056a3f0938ba860b6e626fec701407c 396 Gene3D G3DSA:3.30.70.270 212 379 3.1E-49 T 11-10-2018 APT56_26370 0056a3f0938ba860b6e626fec701407c 396 Pfam PF00990 Diguanylate cyclase, GGDEF domain 217 373 2.6E-40 T 11-10-2018 IPR000160 GGDEF domain APT56_26370 0056a3f0938ba860b6e626fec701407c 396 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 214 377 8.3E-42 T 11-10-2018 IPR000160 GGDEF domain APT56_26370 0056a3f0938ba860b6e626fec701407c 396 SUPERFAMILY SSF55073 222 377 7.22E-43 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_03190 aa8e6225bc1f876a9897818eb9b14123 238 Gene3D G3DSA:1.10.3720.10 19 224 4.4E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03190 aa8e6225bc1f876a9897818eb9b14123 238 SUPERFAMILY SSF161098 22 208 3.4E-43 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03190 aa8e6225bc1f876a9897818eb9b14123 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 222 1.1E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_03190 aa8e6225bc1f876a9897818eb9b14123 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 24 116 2.0E-23 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_20790 08dcca0d3c6ba3f661474d8d7ee4e68e 317 Gene3D G3DSA:3.40.190.10 84 208 5.4E-5 T 11-10-2018 APT56_20790 08dcca0d3c6ba3f661474d8d7ee4e68e 317 SUPERFAMILY SSF53850 5 258 7.24E-10 T 11-10-2018 APT56_21655 e3c30f7a9f949d6c086479ea50d94ebd 119 Pfam PF12643 MazG-like family 33 114 1.4E-14 T 11-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 APT56_21655 e3c30f7a9f949d6c086479ea50d94ebd 119 Gene3D G3DSA:1.10.287.1080 1 106 3.2E-34 T 11-10-2018 APT56_21655 e3c30f7a9f949d6c086479ea50d94ebd 119 SUPERFAMILY SSF101386 3 117 8.07E-37 T 11-10-2018 APT56_21655 e3c30f7a9f949d6c086479ea50d94ebd 119 PIRSF PIRSF029826 1 115 2.7E-45 T 11-10-2018 IPR025984 dCTP pyrophosphatase 1 GO:0009143|GO:0047429 KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 APT56_27780 0cdbd58d1221bbc1e0dd6f6ef9b05561 250 Gene3D G3DSA:3.40.50.300 2 245 8.2E-56 T 11-10-2018 APT56_27780 0cdbd58d1221bbc1e0dd6f6ef9b05561 250 SUPERFAMILY SSF52540 6 235 6.52E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27780 0cdbd58d1221bbc1e0dd6f6ef9b05561 250 SMART SM00382 31 221 2.6E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_27780 0cdbd58d1221bbc1e0dd6f6ef9b05561 250 Pfam PF00005 ABC transporter 22 172 9.9E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_27780 0cdbd58d1221bbc1e0dd6f6ef9b05561 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_17050 f1af20e42f3af8843a2834add76cabb4 204 Gene3D G3DSA:1.20.1290.10 13 177 1.8E-30 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_17050 f1af20e42f3af8843a2834add76cabb4 204 Pfam PF02627 Carboxymuconolactone decarboxylase family 42 109 5.1E-5 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_17050 f1af20e42f3af8843a2834add76cabb4 204 SUPERFAMILY SSF69118 1 176 1.7E-29 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_22970 39a4ca3faf280331d60f0ed51f2e08c4 142 PRINTS PR01438 Universal stress protein signature 1 18 1.2E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_22970 39a4ca3faf280331d60f0ed51f2e08c4 142 PRINTS PR01438 Universal stress protein signature 120 142 1.2E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_22970 39a4ca3faf280331d60f0ed51f2e08c4 142 PRINTS PR01438 Universal stress protein signature 102 114 1.2E-15 T 11-10-2018 IPR006015 Universal stress protein A APT56_22970 39a4ca3faf280331d60f0ed51f2e08c4 142 Gene3D G3DSA:3.40.50.620 1 142 2.1E-35 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_22970 39a4ca3faf280331d60f0ed51f2e08c4 142 SUPERFAMILY SSF52402 3 142 9.77E-34 T 11-10-2018 APT56_22970 39a4ca3faf280331d60f0ed51f2e08c4 142 Pfam PF00582 Universal stress protein family 3 142 7.0E-29 T 11-10-2018 IPR006016 UspA APT56_18085 b4c6b1fb59e8013e5a1afcc2512caeb4 141 Gene3D G3DSA:3.30.300.20 1 141 5.7E-47 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_18085 b4c6b1fb59e8013e5a1afcc2512caeb4 141 Pfam PF02566 OsmC-like protein 40 136 1.4E-20 T 11-10-2018 IPR003718 OsmC/Ohr family APT56_18085 b4c6b1fb59e8013e5a1afcc2512caeb4 141 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 2 137 1.3E-61 T 11-10-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 APT56_18085 b4c6b1fb59e8013e5a1afcc2512caeb4 141 SUPERFAMILY SSF82784 2 139 9.68E-41 T 11-10-2018 IPR036102 OsmC/Ohr superfamily APT56_08040 3b6de76b3fc6156e6d4b2f3b6e0b68cf 336 Pfam PF01757 Acyltransferase family 9 327 5.4E-33 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 APT56_10435 eda53966496b67fa55da6def3dc91cca 265 SUPERFAMILY SSF52540 20 244 4.39E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_10435 eda53966496b67fa55da6def3dc91cca 265 Gene3D G3DSA:3.40.50.300 17 246 1.3E-62 T 11-10-2018 APT56_10435 eda53966496b67fa55da6def3dc91cca 265 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_10435 eda53966496b67fa55da6def3dc91cca 265 Pfam PF00005 ABC transporter 38 176 3.3E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_10435 eda53966496b67fa55da6def3dc91cca 265 SMART SM00382 47 227 3.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15955 88d8ffb19a98dd326858c8ec6662fd17 135 SUPERFAMILY SSF54593 6 130 4.3E-25 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_15955 88d8ffb19a98dd326858c8ec6662fd17 135 Gene3D G3DSA:3.10.180.10 1 135 2.3E-58 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_00230 591a381c6a6ce8673537fadd78970def 305 Gene3D G3DSA:1.10.3720.10 91 300 1.4E-25 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00230 591a381c6a6ce8673537fadd78970def 305 SUPERFAMILY SSF161098 97 287 9.81E-28 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00230 591a381c6a6ce8673537fadd78970def 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 302 7.2E-30 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00230 591a381c6a6ce8673537fadd78970def 305 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 62 2.3E-10 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APT56_09080 5c081f7738cf8c42e17f780612f1a314 251 Gene3D G3DSA:3.90.550.10 1 181 2.0E-27 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_09080 5c081f7738cf8c42e17f780612f1a314 251 SUPERFAMILY SSF53448 1 146 4.96E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_09080 5c081f7738cf8c42e17f780612f1a314 251 Pfam PF00535 Glycosyl transferase family 2 4 121 1.4E-18 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_24935 0a52c849519fdfab50e7d88f19808571 375 Pfam PF12698 ABC-2 family transporter protein 26 364 1.0E-33 T 11-10-2018 APT56_12745 b6e60aa011e5d680592862a69ffda8c5 221 SUPERFAMILY SSF46689 16 87 5.82E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_12745 b6e60aa011e5d680592862a69ffda8c5 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 73 9.1E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_12745 b6e60aa011e5d680592862a69ffda8c5 221 Gene3D G3DSA:1.10.357.10 7 213 6.1E-57 T 11-10-2018 APT56_12745 b6e60aa011e5d680592862a69ffda8c5 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 4.7E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_12745 b6e60aa011e5d680592862a69ffda8c5 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 4.7E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_01405 3d3d681c6553b5f924124cebe23661ca 74 Pfam PF11174 Protein of unknown function (DUF2970) 15 70 1.5E-24 T 11-10-2018 IPR021344 Protein of unknown function DUF2970 APT56_23960 50c4dd44c61fee44042e3ec61729a2c4 220 PIRSF PIRSF000887 12 214 2.3E-40 T 11-10-2018 IPR024173 Phosphoesterase, MJ0037 APT56_23960 50c4dd44c61fee44042e3ec61729a2c4 220 Gene3D G3DSA:3.60.21.10 33 174 1.7E-7 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APT56_23960 50c4dd44c61fee44042e3ec61729a2c4 220 SUPERFAMILY SSF56300 34 166 1.07E-12 T 11-10-2018 APT56_23960 50c4dd44c61fee44042e3ec61729a2c4 220 Pfam PF00149 Calcineurin-like phosphoesterase 34 159 6.8E-6 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APT56_23960 50c4dd44c61fee44042e3ec61729a2c4 220 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 14 209 2.8E-55 T 11-10-2018 IPR026336 Metallophosphoesterase, DNA ligase-associated APT56_09005 8dd424cfa3b732622f3fea9eb29da281 463 Pfam PF02646 RmuC family 144 431 2.4E-74 T 11-10-2018 IPR003798 DNA recombination RmuC APT56_09005 8dd424cfa3b732622f3fea9eb29da281 463 SUPERFAMILY SSF58113 38 156 1.96E-5 T 11-10-2018 APT56_09005 8dd424cfa3b732622f3fea9eb29da281 463 Gene3D G3DSA:1.20.120.20 60 199 3.1E-6 T 11-10-2018 APT56_03170 e827bec97b5de4318e5c5f9efb4aafe3 331 Gene3D G3DSA:3.40.50.1370 14 158 6.9E-25 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_03170 e827bec97b5de4318e5c5f9efb4aafe3 331 Gene3D G3DSA:3.40.50.1370 159 301 6.9E-25 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_03170 e827bec97b5de4318e5c5f9efb4aafe3 331 SUPERFAMILY SSF53671 14 326 8.57E-28 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APT56_02970 9cf1c044cd30df87af727ac7a4ad1fef 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 306 2.4E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_02970 9cf1c044cd30df87af727ac7a4ad1fef 314 Gene3D G3DSA:1.10.3720.10 65 308 2.4E-58 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02970 9cf1c044cd30df87af727ac7a4ad1fef 314 SUPERFAMILY SSF161098 72 294 1.96E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_04800 f90f32dc0e54fc74d6a82c63fc8cf254 276 Gene3D G3DSA:3.10.129.10 36 156 1.2E-9 T 11-10-2018 APT56_04800 f90f32dc0e54fc74d6a82c63fc8cf254 276 Gene3D G3DSA:3.10.129.10 160 275 4.1E-10 T 11-10-2018 APT56_04800 f90f32dc0e54fc74d6a82c63fc8cf254 276 Pfam PF13452 N-terminal half of MaoC dehydratase 74 135 2.3E-7 T 11-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 APT56_04800 f90f32dc0e54fc74d6a82c63fc8cf254 276 SUPERFAMILY SSF54637 55 145 5.62E-7 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_04800 f90f32dc0e54fc74d6a82c63fc8cf254 276 SUPERFAMILY SSF54637 162 272 1.55E-13 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_09730 c6fc463d869e10e264c09e5924dbc724 279 Pfam PF01435 Peptidase family M48 78 261 3.9E-37 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT56_09730 c6fc463d869e10e264c09e5924dbc724 279 Gene3D G3DSA:3.30.2010.10 73 165 2.5E-5 T 11-10-2018 APT56_03750 8f15007bca5e537b51d2fba6f3dbadfd 187 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 1 167 2.4E-40 T 11-10-2018 IPR012842 Type III secretion system HrpE/YscL APT56_03750 8f15007bca5e537b51d2fba6f3dbadfd 187 SUPERFAMILY SSF160527 74 179 8.24E-5 T 11-10-2018 APT56_03750 8f15007bca5e537b51d2fba6f3dbadfd 187 Pfam PF06635 Nodulation protein NolV 3 180 3.9E-17 T 11-10-2018 IPR010586 Nodulation NolV GO:0009877 APT56_18735 0b1179a74040e39980386c118d9c88f1 88 SUPERFAMILY SSF47598 5 47 2.0E-9 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 APT56_18735 0b1179a74040e39980386c118d9c88f1 88 Pfam PF01402 Ribbon-helix-helix protein, copG family 8 45 3.1E-10 T 11-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 APT56_10790 e7e726b5b7c6c58b7807b85a9373bcb7 286 Gene3D G3DSA:3.20.20.410 15 286 1.7E-52 T 11-10-2018 IPR036520 UPF0759 superfamily APT56_10790 e7e726b5b7c6c58b7807b85a9373bcb7 286 Pfam PF01904 Protein of unknown function DUF72 43 284 1.3E-57 T 11-10-2018 IPR002763 Protein of unknown function DUF72 APT56_10790 e7e726b5b7c6c58b7807b85a9373bcb7 286 SUPERFAMILY SSF117396 26 286 1.44E-69 T 11-10-2018 IPR036520 UPF0759 superfamily APT56_23965 deb4efc3c861729b802b2461e70fd235 818 Gene3D G3DSA:3.40.50.300 245 390 2.5E-21 T 11-10-2018 APT56_23965 deb4efc3c861729b802b2461e70fd235 818 PIRSF PIRSF037307 9 816 2.8E-133 T 11-10-2018 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 APT56_23965 deb4efc3c861729b802b2461e70fd235 818 Pfam PF00270 DEAD/DEAH box helicase 24 197 2.7E-23 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APT56_23965 deb4efc3c861729b802b2461e70fd235 818 Gene3D G3DSA:3.40.50.300 14 211 1.1E-39 T 11-10-2018 APT56_23965 deb4efc3c861729b802b2461e70fd235 818 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 11 811 0.0 T 11-10-2018 IPR026362 DEXH box helicase, DNA ligase-associated APT56_23965 deb4efc3c861729b802b2461e70fd235 818 SUPERFAMILY SSF52540 31 365 4.07E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_23965 deb4efc3c861729b802b2461e70fd235 818 Pfam PF08494 DEAD/H associated 595 782 1.2E-43 T 11-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 APT56_23965 deb4efc3c861729b802b2461e70fd235 818 Pfam PF00271 Helicase conserved C-terminal domain 259 354 2.0E-12 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_23965 deb4efc3c861729b802b2461e70fd235 818 SMART SM00490 276 358 1.1E-15 T 11-10-2018 IPR001650 Helicase, C-terminal APT56_23965 deb4efc3c861729b802b2461e70fd235 818 SMART SM00487 17 227 5.1E-21 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APT56_09340 7dbf18a6a339dda94682717016c51052 108 PRINTS PR00421 Thioredoxin family signature 24 32 8.8E-10 T 11-10-2018 APT56_09340 7dbf18a6a339dda94682717016c51052 108 PRINTS PR00421 Thioredoxin family signature 32 41 8.8E-10 T 11-10-2018 APT56_09340 7dbf18a6a339dda94682717016c51052 108 PRINTS PR00421 Thioredoxin family signature 72 83 8.8E-10 T 11-10-2018 APT56_09340 7dbf18a6a339dda94682717016c51052 108 SUPERFAMILY SSF52833 3 108 6.49E-41 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_09340 7dbf18a6a339dda94682717016c51052 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 105 5.0E-39 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT56_09340 7dbf18a6a339dda94682717016c51052 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APT56_09340 7dbf18a6a339dda94682717016c51052 108 Pfam PF00085 Thioredoxin 5 105 1.5E-34 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 APT56_09340 7dbf18a6a339dda94682717016c51052 108 PIRSF PIRSF000077 2 108 2.1E-44 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APT56_09340 7dbf18a6a339dda94682717016c51052 108 Gene3D G3DSA:3.40.30.10 1 106 1.3E-36 T 11-10-2018 APT56_14825 e39e4dc44f29ae96afb15263e82246ec 407 SUPERFAMILY SSF102114 23 407 6.02E-107 T 11-10-2018 APT56_14825 e39e4dc44f29ae96afb15263e82246ec 407 Pfam PF06969 HemN C-terminal domain 335 396 3.6E-12 T 11-10-2018 IPR010723 HemN, C-terminal APT56_14825 e39e4dc44f29ae96afb15263e82246ec 407 Gene3D G3DSA:3.80.30.20 12 323 3.4E-93 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APT56_14825 e39e4dc44f29ae96afb15263e82246ec 407 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 33 376 8.3E-102 T 11-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 APT56_14825 e39e4dc44f29ae96afb15263e82246ec 407 SMART SM00729 31 248 7.1E-49 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_14825 e39e4dc44f29ae96afb15263e82246ec 407 Pfam PF04055 Radical SAM superfamily 36 200 2.5E-17 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_02840 5a02231593a464e37c91d2f5e0a4f41b 132 Gene3D G3DSA:1.20.59.10 27 128 8.3E-25 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_02840 5a02231593a464e37c91d2f5e0a4f41b 132 SMART SM00830 37 120 2.4E-17 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_02840 5a02231593a464e37c91d2f5e0a4f41b 132 Pfam PF01817 Chorismate mutase type II 37 118 4.4E-14 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_02840 5a02231593a464e37c91d2f5e0a4f41b 132 PIRSF PIRSF029775 21 127 7.0E-33 T 11-10-2018 IPR008241 Salicylate biosynthesis protein PchB GO:0004106|GO:0009697|GO:0016835 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6406|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_02840 5a02231593a464e37c91d2f5e0a4f41b 132 SUPERFAMILY SSF48600 28 120 2.09E-18 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APT56_14960 e985ad09ef3e9872981f1f4b6c8104ad 169 SUPERFAMILY SSF46785 22 148 5.08E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14960 e985ad09ef3e9872981f1f4b6c8104ad 169 Gene3D G3DSA:1.10.10.10 21 158 7.5E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14960 e985ad09ef3e9872981f1f4b6c8104ad 169 PIRSF PIRSF036158 1 169 1.2E-76 T 11-10-2018 IPR014601 Transcriptional regulator with MarR-type HTH domain APT56_14960 e985ad09ef3e9872981f1f4b6c8104ad 169 Pfam PF13463 Winged helix DNA-binding domain 50 115 7.9E-19 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_25055 0b5fa73713b78174e505a88fe39b4baf 435 ProSitePatterns PS00216 Sugar transport proteins signature 1. 304 321 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_25055 0b5fa73713b78174e505a88fe39b4baf 435 Gene3D G3DSA:1.20.1250.20 18 435 5.0E-65 T 11-10-2018 APT56_25055 0b5fa73713b78174e505a88fe39b4baf 435 ProSitePatterns PS00217 Sugar transport proteins signature 2. 130 155 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_25055 0b5fa73713b78174e505a88fe39b4baf 435 Pfam PF07690 Major Facilitator Superfamily 26 395 7.8E-31 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_25055 0b5fa73713b78174e505a88fe39b4baf 435 SUPERFAMILY SSF103473 13 431 6.67E-69 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_06610 2a452dbc0d9e090397f37dece40d0662 281 SUPERFAMILY SSF56752 4 276 1.19E-71 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 APT56_06610 2a452dbc0d9e090397f37dece40d0662 281 Gene3D G3DSA:3.30.470.10 1 123 4.1E-30 T 11-10-2018 APT56_06610 2a452dbc0d9e090397f37dece40d0662 281 Gene3D G3DSA:3.20.10.10 126 281 5.7E-39 T 11-10-2018 APT56_06610 2a452dbc0d9e090397f37dece40d0662 281 Pfam PF01063 Amino-transferase class IV 32 252 1.8E-39 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 APT56_26485 7370531a470c013e3c7f20b5d3adf670 128 SUPERFAMILY SSF46785 10 121 9.26E-34 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_26485 7370531a470c013e3c7f20b5d3adf670 128 Pfam PF01638 HxlR-like helix-turn-helix 24 111 6.0E-26 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type APT56_26485 7370531a470c013e3c7f20b5d3adf670 128 Gene3D G3DSA:1.10.10.10 3 124 1.0E-43 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27540 174225548113e4e9544f2523e404e57d 101 Pfam PF13663 Domain of unknown function (DUF4148) 61 97 3.7E-10 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_27540 174225548113e4e9544f2523e404e57d 101 Pfam PF13663 Domain of unknown function (DUF4148) 1 60 2.0E-13 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_24320 e6b4c463a647bc2e435a07b6cad16653 259 SUPERFAMILY SSF52540 3 245 1.67E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_24320 e6b4c463a647bc2e435a07b6cad16653 259 Gene3D G3DSA:3.40.50.300 1 249 7.0E-56 T 11-10-2018 APT56_24320 e6b4c463a647bc2e435a07b6cad16653 259 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 244 1.8E-7 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_24320 e6b4c463a647bc2e435a07b6cad16653 259 SMART SM00382 28 222 5.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_24320 e6b4c463a647bc2e435a07b6cad16653 259 Pfam PF00005 ABC transporter 20 175 1.4E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13180 aceec61de4fc01da73e3945aad9c2339 208 Gene3D G3DSA:2.60.120.10 56 197 4.4E-21 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_13180 aceec61de4fc01da73e3945aad9c2339 208 SUPERFAMILY SSF51182 15 196 1.4E-35 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_06390 61619dd8dfe7689f7b1b4ef7d93ee7f5 119 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 22 118 1.9E-39 T 11-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06390 61619dd8dfe7689f7b1b4ef7d93ee7f5 119 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 2 119 20.287 T 11-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 APT56_06390 61619dd8dfe7689f7b1b4ef7d93ee7f5 119 Gene3D G3DSA:1.20.58.1610 1 119 5.8E-45 T 11-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_02990 382b2ba97263527d775f3ef381de99e4 288 Pfam PF05673 Protein of unknown function (DUF815) 35 286 1.8E-105 T 11-10-2018 IPR008533 Domain of unknown function DUF815 APT56_02990 382b2ba97263527d775f3ef381de99e4 288 SUPERFAMILY SSF52540 30 194 1.21E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02990 382b2ba97263527d775f3ef381de99e4 288 Gene3D G3DSA:3.40.50.300 56 197 1.4E-11 T 11-10-2018 APT56_25590 49248b29345479982775ce7529b90a26 96 Pfam PF13227 Protein of unknown function (DUF4035) 29 76 3.4E-9 T 11-10-2018 IPR025116 Protein of unknown function DUF4035 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Gene3D G3DSA:2.40.110.10 129 225 5.0E-11 T 11-10-2018 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Gene3D G3DSA:1.10.540.10 402 511 1.5E-23 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 404 512 1.7E-16 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 95 2.9E-12 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 622 771 2.8E-17 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 368 3.5E-25 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Gene3D G3DSA:1.10.540.10 7 118 3.5E-19 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Gene3D G3DSA:1.20.140.10 226 378 9.0E-32 T 11-10-2018 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 SUPERFAMILY SSF56645 7 219 4.19E-26 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 SUPERFAMILY SSF47203 622 771 1.51E-16 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 SUPERFAMILY SSF56645 404 633 8.25E-62 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 SUPERFAMILY SSF47203 230 371 5.48E-31 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Gene3D G3DSA:1.20.140.10 627 774 2.2E-24 T 11-10-2018 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Gene3D G3DSA:2.40.110.10 516 626 7.6E-31 T 11-10-2018 APT56_17030 4e141636cdf023c4f7939754de4594b4 776 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 517 610 1.1E-18 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 APT56_02725 6fa4b7e79ae1bb66c4f2a40c3269fa93 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 3.9E-25 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_02725 6fa4b7e79ae1bb66c4f2a40c3269fa93 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 202 4.2E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_02725 6fa4b7e79ae1bb66c4f2a40c3269fa93 219 SUPERFAMILY SSF161098 13 213 1.96E-42 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02725 6fa4b7e79ae1bb66c4f2a40c3269fa93 219 Gene3D G3DSA:1.10.3720.10 1 216 5.3E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11420 6fdf37f39355db8a018ae95deeb921c8 228 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 17 217 1.0E-31 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APT56_11420 6fdf37f39355db8a018ae95deeb921c8 228 Pfam PF01914 MarC family integral membrane protein 10 220 1.4E-50 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APT56_26775 1bc9463fd7cfb9a61515217796047e28 294 Gene3D G3DSA:2.40.10.350 185 262 1.2E-31 T 11-10-2018 APT56_26775 1bc9463fd7cfb9a61515217796047e28 294 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 10 282 1.5E-55 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 APT56_26775 1bc9463fd7cfb9a61515217796047e28 294 Pfam PF04085 rod shape-determining protein MreC 128 274 2.5E-36 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 APT56_26775 1bc9463fd7cfb9a61515217796047e28 294 PIRSF PIRSF038471 7 288 2.0E-71 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 APT56_26775 1bc9463fd7cfb9a61515217796047e28 294 Gene3D G3DSA:2.40.10.340 128 271 1.2E-31 T 11-10-2018 APT56_10610 68c83949470dc29f57e60b84722ebfeb 250 Pfam PF00535 Glycosyl transferase family 2 7 131 4.0E-15 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_10610 68c83949470dc29f57e60b84722ebfeb 250 SUPERFAMILY SSF53448 3 232 4.97E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_10610 68c83949470dc29f57e60b84722ebfeb 250 Gene3D G3DSA:3.90.550.10 2 243 1.7E-24 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_07695 58d5d5f5020ff2f02f3984242c46b314 302 PIRSF PIRSF002936 1 302 9.7E-140 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 APT56_07695 58d5d5f5020ff2f02f3984242c46b314 302 SUPERFAMILY SSF52402 7 210 3.53E-62 T 11-10-2018 APT56_07695 58d5d5f5020ff2f02f3984242c46b314 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 10 302 1.7E-125 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 APT56_07695 58d5d5f5020ff2f02f3984242c46b314 302 Gene3D G3DSA:3.40.50.620 8 211 3.6E-53 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_07695 58d5d5f5020ff2f02f3984242c46b314 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 31 255 4.6E-46 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 APT56_23095 ed07657f649f9e05ff8f5d8eea9b9c9c 279 Pfam PF00005 ABC transporter 52 207 6.2E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_23095 ed07657f649f9e05ff8f5d8eea9b9c9c 279 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 257 278 5.3E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_23095 ed07657f649f9e05ff8f5d8eea9b9c9c 279 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 36 279 4.0E-115 T 11-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD APT56_23095 ed07657f649f9e05ff8f5d8eea9b9c9c 279 SUPERFAMILY SSF52540 36 277 3.26E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_23095 ed07657f649f9e05ff8f5d8eea9b9c9c 279 Gene3D G3DSA:3.40.50.300 33 279 5.0E-48 T 11-10-2018 APT56_23130 7ba86d82c7dd07f07166f8e59214842e 166 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 73 151 5.4E-31 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT56_23130 7ba86d82c7dd07f07166f8e59214842e 166 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 122 128 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APT56_23130 7ba86d82c7dd07f07166f8e59214842e 166 Gene3D G3DSA:1.10.10.10 69 153 9.4E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23130 7ba86d82c7dd07f07166f8e59214842e 166 SUPERFAMILY SSF46767 71 152 2.35E-30 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 APT56_23130 7ba86d82c7dd07f07166f8e59214842e 166 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 72 151 8.3E-34 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APT56_25040 20605317755758c59a88a0066f197536 299 SUPERFAMILY SSF46626 64 166 3.5E-23 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25040 20605317755758c59a88a0066f197536 299 Gene3D G3DSA:1.10.760.10 43 171 8.8E-37 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25040 20605317755758c59a88a0066f197536 299 Gene3D G3DSA:1.10.760.10 175 296 5.8E-40 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25040 20605317755758c59a88a0066f197536 299 SUPERFAMILY SSF46626 181 283 1.72E-18 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_25040 20605317755758c59a88a0066f197536 299 Pfam PF00034 Cytochrome c 185 274 2.5E-10 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_24770 45d3d103e32c74f71eea662a9abd74db 125 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 123 6.9E-40 T 11-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 APT56_24770 45d3d103e32c74f71eea662a9abd74db 125 Pfam PF01597 Glycine cleavage H-protein 7 122 1.0E-39 T 11-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate APT56_24770 45d3d103e32c74f71eea662a9abd74db 125 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 124 36.266 T 11-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 APT56_24770 45d3d103e32c74f71eea662a9abd74db 125 Gene3D G3DSA:2.40.50.100 1 124 5.6E-44 T 11-10-2018 APT56_24770 45d3d103e32c74f71eea662a9abd74db 125 SUPERFAMILY SSF51230 3 123 2.36E-39 T 11-10-2018 IPR011053 Single hybrid motif APT56_24770 45d3d103e32c74f71eea662a9abd74db 125 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APT56_08340 bb83487fcbf582d433154bcc88d49255 230 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_08340 bb83487fcbf582d433154bcc88d49255 230 SUPERFAMILY SSF52540 2 224 2.34E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08340 bb83487fcbf582d433154bcc88d49255 230 SMART SM00382 26 207 3.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08340 bb83487fcbf582d433154bcc88d49255 230 Gene3D G3DSA:3.40.50.300 1 229 2.0E-56 T 11-10-2018 APT56_08340 bb83487fcbf582d433154bcc88d49255 230 Pfam PF00005 ABC transporter 17 158 7.6E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_13970 56c2cb716c6adbcd3552358cf00df2a2 139 SUPERFAMILY SSF54427 1 134 7.67E-19 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_13970 56c2cb716c6adbcd3552358cf00df2a2 139 Pfam PF13577 SnoaL-like domain 12 127 3.1E-7 T 11-10-2018 IPR037401 SnoaL-like domain APT56_13970 56c2cb716c6adbcd3552358cf00df2a2 139 Gene3D G3DSA:3.10.450.50 9 137 1.3E-17 T 11-10-2018 APT56_00515 a0ddf8023228e6666a94e665868cae25 182 Pfam PF13332 Haemagluttinin repeat 2 126 7.0E-30 T 11-10-2018 IPR025157 Hemagglutinin repeat APT56_16470 4cffd37eca9978a0fcc27fae271afde1 226 SMART SM00260 74 218 1.4E-6 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_16470 4cffd37eca9978a0fcc27fae271afde1 226 Pfam PF01584 CheW-like domain 79 220 4.8E-19 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 APT56_16470 4cffd37eca9978a0fcc27fae271afde1 226 Gene3D G3DSA:2.40.50.180 97 213 7.2E-15 T 11-10-2018 APT56_16470 4cffd37eca9978a0fcc27fae271afde1 226 SUPERFAMILY SSF50341 77 222 2.62E-23 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 APT56_16470 4cffd37eca9978a0fcc27fae271afde1 226 Gene3D G3DSA:2.30.30.40 80 212 7.2E-15 T 11-10-2018 APT56_05305 ab84fdccd7a632722e7945f8102b9ce9 79 Pfam PF02954 Bacterial regulatory protein, Fis family 38 72 1.7E-15 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_05305 ab84fdccd7a632722e7945f8102b9ce9 79 SUPERFAMILY SSF46689 9 77 1.36E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_05305 ab84fdccd7a632722e7945f8102b9ce9 79 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 41 58 1.3E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_05305 ab84fdccd7a632722e7945f8102b9ce9 79 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 58 78 1.3E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APT56_05305 ab84fdccd7a632722e7945f8102b9ce9 79 PIRSF PIRSF002097 1 78 1.3E-26 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 APT56_05305 ab84fdccd7a632722e7945f8102b9ce9 79 Gene3D G3DSA:1.10.10.60 1 77 3.0E-22 T 11-10-2018 APT56_17625 70053e5cec9e03827005a8d8d89eca1f 393 Pfam PF13458 Periplasmic binding protein 37 358 1.9E-62 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_17625 70053e5cec9e03827005a8d8d89eca1f 393 Gene3D G3DSA:3.40.50.2300 43 352 4.7E-76 T 11-10-2018 APT56_17625 70053e5cec9e03827005a8d8d89eca1f 393 SUPERFAMILY SSF53822 36 386 1.51E-62 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_17625 70053e5cec9e03827005a8d8d89eca1f 393 Gene3D G3DSA:3.40.50.2300 153 290 4.7E-76 T 11-10-2018 APT56_05870 e39d8be7d4d8d7b07ce7813495d17b94 740 Pfam PF13515 Fusaric acid resistance protein-like 421 543 4.0E-16 T 11-10-2018 APT56_05870 e39d8be7d4d8d7b07ce7813495d17b94 740 Pfam PF12805 FUSC-like inner membrane protein yccS 72 352 2.6E-70 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal APT56_10205 a616fa8074a7a0a71f7dbe978d7aabb6 142 Pfam PF11681 Protein of unknown function (DUF3277) 27 132 1.8E-9 T 11-10-2018 IPR021695 Bacteriophage rv5, Orf52 APT56_25810 a48df5e2d7d9d4aaccec77643d1941ae 186 SUPERFAMILY SSF56784 2 177 3.56E-39 T 11-10-2018 IPR036412 HAD-like superfamily APT56_25810 a48df5e2d7d9d4aaccec77643d1941ae 186 Pfam PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 1 176 5.5E-24 T 11-10-2018 IPR010708 5'(3')-deoxyribonucleotidase GO:0008253|GO:0009264 Reactome: R-HSA-73621 APT56_25810 a48df5e2d7d9d4aaccec77643d1941ae 186 Gene3D G3DSA:1.10.40.40 14 65 1.1E-65 T 11-10-2018 APT56_25810 a48df5e2d7d9d4aaccec77643d1941ae 186 Gene3D G3DSA:3.40.50.1000 4 175 1.1E-65 T 11-10-2018 IPR023214 HAD superfamily APT56_22010 180edfb6c5f223baa1bbdb46445a70bf 429 Gene3D G3DSA:3.40.50.10540 4 408 3.3E-125 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_22010 180edfb6c5f223baa1bbdb46445a70bf 429 Pfam PF02515 CoA-transferase family III 4 391 3.7E-113 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_22010 180edfb6c5f223baa1bbdb46445a70bf 429 Gene3D G3DSA:3.30.1540.10 245 343 3.3E-125 T 11-10-2018 APT56_22010 180edfb6c5f223baa1bbdb46445a70bf 429 SUPERFAMILY SSF89796 2 414 1.44E-121 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_14310 bdb6f664d24a02d6c8d7e61db591051c 182 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 176 9.3E-52 T 11-10-2018 IPR006286 Deglycase PfpI APT56_14310 bdb6f664d24a02d6c8d7e61db591051c 182 Gene3D G3DSA:3.40.50.880 1 180 3.8E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_14310 bdb6f664d24a02d6c8d7e61db591051c 182 Pfam PF01965 DJ-1/PfpI family 10 175 2.1E-51 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_14310 bdb6f664d24a02d6c8d7e61db591051c 182 SUPERFAMILY SSF52317 9 177 1.02E-46 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_14170 4a0cf63d55f34642c88003750ec9aff8 587 SUPERFAMILY SSF55073 426 583 1.18E-44 T 11-10-2018 IPR029787 Nucleotide cyclase APT56_14170 4a0cf63d55f34642c88003750ec9aff8 587 Gene3D G3DSA:3.30.70.270 410 584 3.4E-52 T 11-10-2018 APT56_14170 4a0cf63d55f34642c88003750ec9aff8 587 Pfam PF00990 Diguanylate cyclase, GGDEF domain 421 580 3.7E-43 T 11-10-2018 IPR000160 GGDEF domain APT56_14170 4a0cf63d55f34642c88003750ec9aff8 587 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 417 583 4.7E-46 T 11-10-2018 IPR000160 GGDEF domain APT56_14170 4a0cf63d55f34642c88003750ec9aff8 587 SMART SM00267 410 584 4.4E-54 T 11-10-2018 IPR000160 GGDEF domain APT56_05725 fdc417694f7b91ee901135408dc5815b 109 Pfam PF00893 Small Multidrug Resistance protein 1 93 9.3E-33 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 APT56_05725 fdc417694f7b91ee901135408dc5815b 109 SUPERFAMILY SSF103481 5 104 7.06E-22 T 11-10-2018 APT56_05725 fdc417694f7b91ee901135408dc5815b 109 Gene3D G3DSA:1.10.3730.20 1 109 5.4E-41 T 11-10-2018 APT56_11895 f0d049b5b2f5fd976c367fdd70541bf9 289 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 282 1.5E-118 T 11-10-2018 IPR022522 Flagellar motor stator, MotA APT56_11895 f0d049b5b2f5fd976c367fdd70541bf9 289 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 11-10-2018 IPR000540 Flagellar motor protein MotA, conserved site APT56_11895 f0d049b5b2f5fd976c367fdd70541bf9 289 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 238 9.5E-11 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APT56_17345 f79389a065d026526f3e55caf41faeb6 307 SUPERFAMILY SSF74653 25 122 1.01E-19 T 11-10-2018 APT56_17345 f79389a065d026526f3e55caf41faeb6 307 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 59 120 1.2E-10 T 11-10-2018 IPR006260 TonB/TolA, C-terminal APT56_17345 f79389a065d026526f3e55caf41faeb6 307 Gene3D G3DSA:3.30.1150.10 14 122 3.3E-21 T 11-10-2018 APT56_17345 f79389a065d026526f3e55caf41faeb6 307 Pfam PF13103 TonB C terminal 30 112 2.0E-11 T 11-10-2018 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 8.4E-12 T 11-10-2018 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 8.4E-12 T 11-10-2018 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 8.4E-12 T 11-10-2018 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 10 291 3.1E-19 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 Gene3D G3DSA:3.50.50.60 122 232 1.4E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 11 33 2.3E-11 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 131 143 2.3E-11 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 2.3E-11 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 284 2.3E-11 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 SUPERFAMILY SSF51905 6 299 1.61E-30 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_15365 72aef9e89dfd805ae8a7837835d33621 319 Gene3D G3DSA:3.50.50.60 10 297 1.4E-95 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_21270 ab3856a1a53b077b10c757c45a853a1b 545 SUPERFAMILY SSF51905 58 540 2.81E-21 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_21270 ab3856a1a53b077b10c757c45a853a1b 545 Gene3D G3DSA:3.50.50.60 56 388 7.2E-21 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_21270 ab3856a1a53b077b10c757c45a853a1b 545 Pfam PF13450 NAD(P)-binding Rossmann-like domain 63 130 5.9E-10 T 11-10-2018 APT56_14080 0249d29f33b229944a614b12e5fc9ffe 382 Pfam PF15887 Putative zinc-binding metallo-peptidase 128 376 1.7E-101 T 11-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase APT56_14080 0249d29f33b229944a614b12e5fc9ffe 382 PIRSF PIRSF012641 27 382 2.3E-126 T 11-10-2018 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase APT56_14080 0249d29f33b229944a614b12e5fc9ffe 382 Pfam PF10005 zinc-ribbon domain 30 122 9.9E-27 T 11-10-2018 IPR011201 Zinc-ribbon domain, bacteria APT56_07565 915aa90f4196c868343de3287174be08 229 SUPERFAMILY SSF52540 13 226 3.28E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07565 915aa90f4196c868343de3287174be08 229 Hamap MF_00238 Cytidylate kinase [cmk]. 13 227 32.404 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 APT56_07565 915aa90f4196c868343de3287174be08 229 TIGRFAM TIGR00017 cmk: cytidylate kinase 13 221 1.1E-71 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 APT56_07565 915aa90f4196c868343de3287174be08 229 Pfam PF02224 Cytidylate kinase 15 222 2.2E-71 T 11-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 APT56_07565 915aa90f4196c868343de3287174be08 229 Gene3D G3DSA:3.40.50.300 8 228 6.2E-77 T 11-10-2018 APT56_14075 d74d3b710509ca596ca1adf97c15b88d 288 Gene3D G3DSA:3.40.50.150 63 220 1.0E-41 T 11-10-2018 APT56_14075 d74d3b710509ca596ca1adf97c15b88d 288 Pfam PF13847 Methyltransferase domain 88 208 3.1E-9 T 11-10-2018 IPR025714 Methyltransferase domain APT56_14075 d74d3b710509ca596ca1adf97c15b88d 288 SUPERFAMILY SSF53335 64 192 6.22E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_20435 6c17b4828ccda79ca98f5319048a6b65 336 Gene3D G3DSA:3.40.50.720 14 324 2.9E-28 T 11-10-2018 APT56_20435 6c17b4828ccda79ca98f5319048a6b65 336 Pfam PF13460 NAD(P)H-binding 18 115 2.2E-10 T 11-10-2018 IPR016040 NAD(P)-binding domain APT56_20435 6c17b4828ccda79ca98f5319048a6b65 336 SUPERFAMILY SSF51735 14 324 1.44E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_14390 6c2ecab2632ef7b6d80a4afd5653dc34 100 Pfam PF05247 Flagellar transcriptional activator (FlhD) 5 85 1.1E-12 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 APT56_14390 6c2ecab2632ef7b6d80a4afd5653dc34 100 Gene3D G3DSA:1.10.4000.10 3 82 1.1E-14 T 11-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily APT56_14390 6c2ecab2632ef7b6d80a4afd5653dc34 100 SUPERFAMILY SSF63592 5 81 8.5E-13 T 11-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily APT56_16425 b465dc80326d6dfa16a7890084e0f9c6 428 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 233 247 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_16425 b465dc80326d6dfa16a7890084e0f9c6 428 Gene3D G3DSA:3.40.640.10 16 289 1.7E-67 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_16425 b465dc80326d6dfa16a7890084e0f9c6 428 Gene3D G3DSA:3.90.1150.10 291 428 7.1E-44 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_16425 b465dc80326d6dfa16a7890084e0f9c6 428 SUPERFAMILY SSF53383 70 426 1.06E-87 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_16425 b465dc80326d6dfa16a7890084e0f9c6 428 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 22 424 7.2E-99 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_16425 b465dc80326d6dfa16a7890084e0f9c6 428 PIRSF PIRSF001434 4 428 4.0E-125 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APT56_19280 90a12542084b0a79088516eadc89116b 331 Gene3D G3DSA:3.40.50.880 3 207 4.2E-58 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_19280 90a12542084b0a79088516eadc89116b 331 SUPERFAMILY SSF46689 211 262 5.12E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_19280 90a12542084b0a79088516eadc89116b 331 SUPERFAMILY SSF46689 265 315 3.14E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_19280 90a12542084b0a79088516eadc89116b 331 Pfam PF12833 Helix-turn-helix domain 234 313 2.6E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_19280 90a12542084b0a79088516eadc89116b 331 SUPERFAMILY SSF52317 6 194 1.8E-49 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_19280 90a12542084b0a79088516eadc89116b 331 Pfam PF01965 DJ-1/PfpI family 47 173 2.8E-18 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_19280 90a12542084b0a79088516eadc89116b 331 SMART SM00342 228 312 1.7E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_19280 90a12542084b0a79088516eadc89116b 331 Gene3D G3DSA:1.10.10.60 212 317 2.0E-25 T 11-10-2018 APT56_21465 215fb1ff5c827bce50fa0b6f8c867f0c 290 Pfam PF13714 Phosphoenolpyruvate phosphomutase 7 253 1.6E-70 T 11-10-2018 APT56_21465 215fb1ff5c827bce50fa0b6f8c867f0c 290 TIGRFAM TIGR02321 Pphn_pyruv_hyd: phosphonopyruvate hydrolase 3 290 2.3E-154 T 11-10-2018 IPR012649 Phosphonopyruvate hydrolase KEGG: 00440+3.11.1.3 APT56_21465 215fb1ff5c827bce50fa0b6f8c867f0c 290 SUPERFAMILY SSF51621 2 289 1.66E-76 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_21465 215fb1ff5c827bce50fa0b6f8c867f0c 290 Gene3D G3DSA:3.20.20.60 1 290 1.4E-94 T 11-10-2018 APT56_08965 13f8ff5567616fc1c297502ee3a82be6 243 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 44 225 6.7E-46 T 11-10-2018 APT56_08965 13f8ff5567616fc1c297502ee3a82be6 243 Gene3D G3DSA:1.10.510.10 144 239 4.0E-12 T 11-10-2018 APT56_08965 13f8ff5567616fc1c297502ee3a82be6 243 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 1 239 27.158 T 11-10-2018 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 APT56_08965 13f8ff5567616fc1c297502ee3a82be6 243 SUPERFAMILY SSF56112 45 194 1.28E-20 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_21315 a7d1127b9bffac90faec8b0566857316 263 Gene3D G3DSA:3.90.226.10 1 207 3.8E-58 T 11-10-2018 APT56_21315 a7d1127b9bffac90faec8b0566857316 263 Gene3D G3DSA:1.10.12.10 208 263 4.3E-12 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APT56_21315 a7d1127b9bffac90faec8b0566857316 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 261 3.3E-41 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_21315 a7d1127b9bffac90faec8b0566857316 263 SUPERFAMILY SSF52096 7 262 1.66E-64 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_15560 d1b890f0ee46c408b5978822c3f89a32 683 Pfam PF04632 Fusaric acid resistance protein family 10 670 1.8E-192 T 11-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 227 242 9.8E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 357 369 9.8E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 305 319 9.8E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 333 346 9.8E-5 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 7 509 8.7E-154 T 11-10-2018 IPR004482 Mg chelatase-related protein APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 Gene3D G3DSA:3.40.50.300 208 511 1.2E-50 T 11-10-2018 APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 SMART SM00382 228 408 1.8E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 159 2.4E-34 T 11-10-2018 APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 SUPERFAMILY SSF52540 209 511 9.69E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 Pfam PF01078 Magnesium chelatase, subunit ChlI 209 406 1.7E-90 T 11-10-2018 IPR000523 Magnesium chelatase ChlI domain APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 SUPERFAMILY SSF54211 8 188 1.9E-22 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_10020 eb15d9ed85281a68984dd3e7ea1ccc76 513 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 417 509 4.8E-28 T 11-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 SUPERFAMILY SSF51735 2 251 1.74E-75 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 Gene3D G3DSA:3.40.50.720 1 252 4.2E-79 T 11-10-2018 APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 1.2E-63 T 11-10-2018 APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.3E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.9E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 3.9E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.9E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.9E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.9E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_06175 09d6cc4e7f36163cc324822ff958bfa6 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.9E-36 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_16875 cf1434d322e30b5244dcb1fee4c06b03 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 46 319 6.2E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_16875 cf1434d322e30b5244dcb1fee4c06b03 323 PIRSF PIRSF017082 1 323 1.3E-81 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_16875 cf1434d322e30b5244dcb1fee4c06b03 323 Gene3D G3DSA:3.40.190.10 124 247 2.6E-110 T 11-10-2018 APT56_16875 cf1434d322e30b5244dcb1fee4c06b03 323 SUPERFAMILY SSF53850 111 282 4.78E-11 T 11-10-2018 APT56_16875 cf1434d322e30b5244dcb1fee4c06b03 323 Gene3D G3DSA:3.40.190.150 26 313 2.6E-110 T 11-10-2018 APT56_19780 30595058bcdeeac5f13bfe4a8312dd2b 317 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 11 314 3.9E-49 T 11-10-2018 IPR017592 Pilus assembly, Flp-type CpaB APT56_19780 30595058bcdeeac5f13bfe4a8312dd2b 317 SMART SM00858 56 117 4.8E-8 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_19780 30595058bcdeeac5f13bfe4a8312dd2b 317 Pfam PF08666 SAF domain 57 116 3.7E-8 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 APT56_19780 30595058bcdeeac5f13bfe4a8312dd2b 317 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 119 231 1.2E-28 T 11-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain APT56_25530 a3a25e66a723a02a4451d8a29b4fcb64 311 Gene3D G3DSA:3.20.20.70 2 311 9.1E-129 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_25530 a3a25e66a723a02a4451d8a29b4fcb64 311 Pfam PF05853 beta-keto acid cleavage enzyme 7 303 2.0E-107 T 11-10-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247 APT56_05285 e4dff2a35c6dbf23b1ce667bc3c6009a 306 Gene3D G3DSA:3.40.50.720 2 273 3.9E-50 T 11-10-2018 APT56_05285 e4dff2a35c6dbf23b1ce667bc3c6009a 306 SUPERFAMILY SSF51735 1 262 1.34E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_05285 e4dff2a35c6dbf23b1ce667bc3c6009a 306 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 217 1.8E-23 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_02965 1232da77f9084c49c573cfddb51ba007 299 SUPERFAMILY SSF161098 13 286 1.72E-57 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02965 1232da77f9084c49c573cfddb51ba007 299 Gene3D G3DSA:1.10.3720.10 10 283 5.2E-53 T 11-10-2018 IPR035906 MetI-like superfamily APT56_02965 1232da77f9084c49c573cfddb51ba007 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 284 1.5E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_10670 6d544662e595e4aefb1f32636516b468 319 Gene3D G3DSA:3.20.20.530 20 313 2.9E-68 T 11-10-2018 APT56_10670 6d544662e595e4aefb1f32636516b468 319 Pfam PF01619 Proline dehydrogenase 44 299 1.6E-18 T 11-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 APT56_10670 6d544662e595e4aefb1f32636516b468 319 SUPERFAMILY SSF51730 37 310 9.81E-47 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like APT56_07575 e05e61667ac642e9d22c05db67e8acec 119 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 2 91 1.9E-37 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 APT56_07575 e05e61667ac642e9d22c05db67e8acec 119 Pfam PF00216 Bacterial DNA-binding protein 1 90 8.0E-28 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_07575 e05e61667ac642e9d22c05db67e8acec 119 Gene3D G3DSA:4.10.520.10 1 94 4.0E-31 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APT56_07575 e05e61667ac642e9d22c05db67e8acec 119 SMART SM00411 1 91 5.2E-36 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_07575 e05e61667ac642e9d22c05db67e8acec 119 SUPERFAMILY SSF47729 1 91 1.62E-28 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APT56_07575 e05e61667ac642e9d22c05db67e8acec 119 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 7.7E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_07575 e05e61667ac642e9d22c05db67e8acec 119 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 7.7E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_07575 e05e61667ac642e9d22c05db67e8acec 119 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 7.7E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APT56_15110 d0388b3820d2f93d4d0173a64eeaf759 249 Gene3D G3DSA:3.20.20.190 12 240 2.9E-76 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 APT56_15110 d0388b3820d2f93d4d0173a64eeaf759 249 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 16 242 2.3E-38 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 APT56_15110 d0388b3820d2f93d4d0173a64eeaf759 249 SUPERFAMILY SSF51695 12 246 2.62E-63 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 APT56_16160 55c59427e22d4dde8dd4b5de9b759f17 259 Gene3D G3DSA:1.25.40.590 26 188 6.7E-42 T 11-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily APT56_16160 55c59427e22d4dde8dd4b5de9b759f17 259 Pfam PF09850 Type VI secretion system protein DotU 30 227 3.4E-59 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU APT56_16160 55c59427e22d4dde8dd4b5de9b759f17 259 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 29 233 2.0E-60 T 11-10-2018 IPR017732 Type IV / VI secretion system, DotU APT56_12420 6b344d7b3377f540452cd404955c880b 229 Pfam PF01988 VIT family 15 222 4.8E-55 T 11-10-2018 IPR008217 Ccc1 family APT56_22570 d4cbf931ad428ac8688db784f07b4b34 314 Gene3D G3DSA:3.40.718.10 6 303 5.4E-98 T 11-10-2018 APT56_22570 d4cbf931ad428ac8688db784f07b4b34 314 Pfam PF01515 Phosphate acetyl/butaryl transferase 85 299 2.7E-43 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APT56_22570 d4cbf931ad428ac8688db784f07b4b34 314 SUPERFAMILY SSF53659 9 303 1.48E-68 T 11-10-2018 APT56_22570 d4cbf931ad428ac8688db784f07b4b34 314 PIRSF PIRSF000428 6 305 6.4E-87 T 11-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APT56_22535 4c0c8d947081936c64be7c14543a0a6b 104 Pfam PF13591 MerR HTH family regulatory protein 19 100 2.6E-13 T 11-10-2018 APT56_22535 4c0c8d947081936c64be7c14543a0a6b 104 Gene3D G3DSA:1.10.1660.10 15 103 1.7E-23 T 11-10-2018 APT56_11725 75bf5b0bc7513de12a24b4f66ac362be 504 PIRSF PIRSF002741 15 503 3.7E-105 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APT56_11725 75bf5b0bc7513de12a24b4f66ac362be 504 Gene3D G3DSA:3.40.190.10 181 486 4.2E-123 T 11-10-2018 APT56_11725 75bf5b0bc7513de12a24b4f66ac362be 504 Gene3D G3DSA:3.90.76.10 32 180 4.2E-123 T 11-10-2018 APT56_11725 75bf5b0bc7513de12a24b4f66ac362be 504 Gene3D G3DSA:3.10.105.10 256 476 4.2E-123 T 11-10-2018 APT56_11725 75bf5b0bc7513de12a24b4f66ac362be 504 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 422 1.6E-82 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APT56_11725 75bf5b0bc7513de12a24b4f66ac362be 504 SUPERFAMILY SSF53850 23 501 8.51E-130 T 11-10-2018 APT56_27335 f69be9beeb2d94daf3bc3dc720c811b2 264 Pfam PF02585 GlcNAc-PI de-N-acetylase 13 134 2.2E-12 T 11-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 APT56_27335 f69be9beeb2d94daf3bc3dc720c811b2 264 SUPERFAMILY SSF102588 10 206 7.32E-18 T 11-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 APT56_27335 f69be9beeb2d94daf3bc3dc720c811b2 264 Gene3D G3DSA:3.40.50.10320 7 203 6.3E-14 T 11-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 APT56_06130 4d0556223e2f41dfefb55017b32c1146 173 SUPERFAMILY SSF88659 93 171 4.67E-12 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_06130 4d0556223e2f41dfefb55017b32c1146 173 Gene3D G3DSA:1.10.10.10 90 172 3.5E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_06130 4d0556223e2f41dfefb55017b32c1146 173 Gene3D G3DSA:1.10.1740.10 3 78 1.1E-8 T 11-10-2018 APT56_06130 4d0556223e2f41dfefb55017b32c1146 173 SUPERFAMILY SSF88946 11 94 2.79E-14 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_06130 4d0556223e2f41dfefb55017b32c1146 173 Pfam PF04542 Sigma-70 region 2 15 81 2.3E-13 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_06130 4d0556223e2f41dfefb55017b32c1146 173 Pfam PF08281 Sigma-70, region 4 115 167 1.1E-11 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_06130 4d0556223e2f41dfefb55017b32c1146 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 169 5.2E-21 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_13945 bb7614b871567a00043a00731b07d3dd 176 SUPERFAMILY SSF46785 3 145 8.49E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13945 bb7614b871567a00043a00731b07d3dd 176 PIRSF PIRSF006707 1 176 8.2E-56 T 11-10-2018 IPR026282 DNA-binding protein, MJ1563 type APT56_13945 bb7614b871567a00043a00731b07d3dd 176 Pfam PF12802 MarR family 26 80 1.0E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_13945 bb7614b871567a00043a00731b07d3dd 176 Gene3D G3DSA:1.10.10.10 1 86 2.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_15270 0df58f90e68243d5ba7e9cd320d50173 93 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 34 85 1.8E-20 T 11-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 APT56_15270 0df58f90e68243d5ba7e9cd320d50173 93 PIRSF PIRSF028784 1 93 7.8E-30 T 11-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 APT56_16960 5d3ed75067d88709cc2d39a6756db490 151 SUPERFAMILY SSF69118 4 126 7.48E-27 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_16960 5d3ed75067d88709cc2d39a6756db490 151 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 122 5.4E-16 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_16960 5d3ed75067d88709cc2d39a6756db490 151 Gene3D G3DSA:1.20.1290.10 4 129 8.2E-31 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_09565 55cf64962117ee08d29dbce184fc5a7f 385 Pfam PF13393 Histidyl-tRNA synthetase 10 316 1.4E-109 T 11-10-2018 APT56_09565 55cf64962117ee08d29dbce184fc5a7f 385 PIRSF PIRSF001549 5 343 3.9E-31 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 APT56_09565 55cf64962117ee08d29dbce184fc5a7f 385 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 16 367 33.675 T 11-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 APT56_09565 55cf64962117ee08d29dbce184fc5a7f 385 Gene3D G3DSA:3.30.930.10 4 328 3.1E-59 T 11-10-2018 APT56_09565 55cf64962117ee08d29dbce184fc5a7f 385 SUPERFAMILY SSF55681 4 319 1.16E-51 T 11-10-2018 APT56_19610 7996f91be247db34b0bcc2799c1f25c0 269 Gene3D G3DSA:3.40.50.10860 8 109 3.4E-75 T 11-10-2018 APT56_19610 7996f91be247db34b0bcc2799c1f25c0 269 SUPERFAMILY SSF53223 3 107 1.84E-23 T 11-10-2018 APT56_19610 7996f91be247db34b0bcc2799c1f25c0 269 SUPERFAMILY SSF51735 110 253 8.99E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_19610 7996f91be247db34b0bcc2799c1f25c0 269 Gene3D G3DSA:3.40.50.720 110 249 3.4E-75 T 11-10-2018 APT56_19610 7996f91be247db34b0bcc2799c1f25c0 269 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 13 96 7.1E-20 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APT56_26500 84e4ed5d9b090a90e93940aff362ee0e 186 SUPERFAMILY SSF54427 13 134 1.21E-8 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_10300 6cea3cdd48a094715f048fda189098bb 221 Pfam PF02586 SOS response associated peptidase (SRAP) 1 220 1.4E-25 T 11-10-2018 IPR003738 SOS response associated peptidase (SRAP) APT56_10300 6cea3cdd48a094715f048fda189098bb 221 Gene3D G3DSA:3.90.1680.10 1 221 2.5E-71 T 11-10-2018 IPR036590 SOS response associated peptidase-like APT56_10300 6cea3cdd48a094715f048fda189098bb 221 SUPERFAMILY SSF143081 2 218 6.8E-49 T 11-10-2018 IPR036590 SOS response associated peptidase-like APT56_06745 e79e7b33ce226a6a6cb426797b71b778 217 Pfam PF01794 Ferric reductase like transmembrane component 64 176 1.2E-15 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain APT56_06745 e79e7b33ce226a6a6cb426797b71b778 217 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 22 216 20.307 T 11-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 APT56_19765 82a353c1c4f4a2b90bdc709f5d46ee86 451 SUPERFAMILY SSF52540 72 404 4.07E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19765 82a353c1c4f4a2b90bdc709f5d46ee86 451 Gene3D G3DSA:3.40.50.300 188 429 1.1E-69 T 11-10-2018 APT56_19765 82a353c1c4f4a2b90bdc709f5d46ee86 451 Pfam PF00437 Type II/IV secretion system protein 92 368 2.4E-78 T 11-10-2018 IPR001482 Type II/IV secretion system protein APT56_19765 82a353c1c4f4a2b90bdc709f5d46ee86 451 Gene3D G3DSA:3.30.450.380 18 187 1.4E-36 T 11-10-2018 APT56_11485 a9686ce085cdb6cd68e0249ef9d8e3d8 260 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 257 3.0E-78 T 11-10-2018 APT56_11485 a9686ce085cdb6cd68e0249ef9d8e3d8 260 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 257 1.3E-76 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 APT56_11485 a9686ce085cdb6cd68e0249ef9d8e3d8 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 250 1.2E-19 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase APT56_11485 a9686ce085cdb6cd68e0249ef9d8e3d8 260 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 214 225 - T 11-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 APT56_11485 a9686ce085cdb6cd68e0249ef9d8e3d8 260 Gene3D G3DSA:3.60.10.10 1 258 4.9E-75 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APT56_11485 a9686ce085cdb6cd68e0249ef9d8e3d8 260 SUPERFAMILY SSF56219 1 258 8.51E-79 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APT56_03795 808ff0d1982dbf37f8f1310f3bf701c8 132 Pfam PF05932 Tir chaperone protein (CesT) family 8 124 9.4E-6 T 11-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 APT56_03795 808ff0d1982dbf37f8f1310f3bf701c8 132 SUPERFAMILY SSF69635 6 126 1.53E-8 T 11-10-2018 APT56_03795 808ff0d1982dbf37f8f1310f3bf701c8 132 Gene3D G3DSA:3.30.1460.10 6 130 1.2E-8 T 11-10-2018 APT56_11140 2d1a56e62b83da4dcf468fbdb81430bd 381 SUPERFAMILY SSF89796 7 375 1.57E-119 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_11140 2d1a56e62b83da4dcf468fbdb81430bd 381 Gene3D G3DSA:3.40.50.10540 8 374 2.3E-113 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_11140 2d1a56e62b83da4dcf468fbdb81430bd 381 Gene3D G3DSA:3.30.1540.10 234 326 2.3E-113 T 11-10-2018 APT56_11140 2d1a56e62b83da4dcf468fbdb81430bd 381 Pfam PF02515 CoA-transferase family III 9 374 5.2E-115 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_19785 c0d2cfb7c3cc964d2f425a086d35fcee 165 Pfam PF07811 TadE-like protein 21 63 7.7E-10 T 11-10-2018 IPR012495 TadE-like APT56_15160 037fb7a53cc0f9a2e2a4f18f7692cabd 259 SUPERFAMILY SSF53098 4 230 1.95E-40 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APT56_15160 037fb7a53cc0f9a2e2a4f18f7692cabd 259 Gene3D G3DSA:3.30.420.10 4 214 1.4E-17 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APT56_15160 037fb7a53cc0f9a2e2a4f18f7692cabd 259 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 47 256 4.3E-90 T 11-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like APT56_12590 297132944a1126a0e4ae017b93560c8a 465 Pfam PF12779 YXWGXW repeat (2 copies) 107 127 0.11 T 11-10-2018 IPR024447 YXWGXW repeat APT56_12590 297132944a1126a0e4ae017b93560c8a 465 Pfam PF12779 YXWGXW repeat (2 copies) 74 99 0.016 T 11-10-2018 IPR024447 YXWGXW repeat APT56_01285 7a25265526ecda6882ba4cc59969a000 325 PIRSF PIRSF017082 1 325 1.7E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_01285 7a25265526ecda6882ba4cc59969a000 325 Gene3D G3DSA:3.40.190.150 29 315 5.3E-116 T 11-10-2018 APT56_01285 7a25265526ecda6882ba4cc59969a000 325 SUPERFAMILY SSF53850 112 286 6.79E-12 T 11-10-2018 APT56_01285 7a25265526ecda6882ba4cc59969a000 325 Gene3D G3DSA:3.40.190.10 127 250 5.3E-116 T 11-10-2018 APT56_01285 7a25265526ecda6882ba4cc59969a000 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 321 2.0E-89 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_24240 cbf93874edb86c567cedf3c463759cae 220 Pfam PF07791 Protein of unknown function (DUF1629) 21 142 2.1E-47 T 11-10-2018 IPR012433 Protein of unknown function DUF1629 APT56_03735 e5c2a69a2b4b0fa7b24c56d54ea1b376 138 Pfam PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI 28 137 8.0E-16 T 11-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 APT56_03735 e5c2a69a2b4b0fa7b24c56d54ea1b376 138 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 101 137 1.7E-8 T 11-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 APT56_15040 b221f102172aef87c6d2a37f97d4a72b 206 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 36 165 1.9E-21 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_13555 ca7702773a2da9ca7cba7bf0eea97a33 237 SUPERFAMILY SSF52317 37 202 2.22E-39 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_13555 ca7702773a2da9ca7cba7bf0eea97a33 237 Pfam PF00117 Glutamine amidotransferase class-I 76 197 1.3E-18 T 11-10-2018 IPR017926 Glutamine amidotransferase APT56_13555 ca7702773a2da9ca7cba7bf0eea97a33 237 PRINTS PR00096 Glutamine amidotransferase superfamily signature 183 196 4.3E-5 T 11-10-2018 APT56_13555 ca7702773a2da9ca7cba7bf0eea97a33 237 PRINTS PR00096 Glutamine amidotransferase superfamily signature 92 103 4.3E-5 T 11-10-2018 APT56_13555 ca7702773a2da9ca7cba7bf0eea97a33 237 Gene3D G3DSA:3.40.50.880 18 222 1.2E-52 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_13580 266fa31a404fd82801b935b61e2d9edf 363 Pfam PF09084 NMT1/THI5 like 65 256 1.2E-15 T 11-10-2018 IPR015168 SsuA/THI5-like APT56_13580 266fa31a404fd82801b935b61e2d9edf 363 Gene3D G3DSA:3.40.190.10 123 225 3.5E-127 T 11-10-2018 APT56_13580 266fa31a404fd82801b935b61e2d9edf 363 SUPERFAMILY SSF53850 43 258 3.02E-38 T 11-10-2018 APT56_13580 266fa31a404fd82801b935b61e2d9edf 363 Gene3D G3DSA:3.40.190.10 32 346 3.5E-127 T 11-10-2018 APT56_27405 ba2878d00809dfe1c9e022655143c7a6 294 SUPERFAMILY SSF103481 185 281 2.09E-12 T 11-10-2018 APT56_27405 ba2878d00809dfe1c9e022655143c7a6 294 SUPERFAMILY SSF103481 38 139 1.44E-18 T 11-10-2018 APT56_27405 ba2878d00809dfe1c9e022655143c7a6 294 Pfam PF00892 EamA-like transporter family 150 281 6.1E-18 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_27405 ba2878d00809dfe1c9e022655143c7a6 294 Pfam PF00892 EamA-like transporter family 9 136 2.4E-23 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_02080 8d935152fb13db7ecdf4de38b4f1ffb7 119 SMART SM00905 6 117 2.2E-31 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT56_02080 8d935152fb13db7ecdf4de38b4f1ffb7 119 SUPERFAMILY SSF55620 3 119 1.5E-29 T 11-10-2018 APT56_02080 8d935152fb13db7ecdf4de38b4f1ffb7 119 Pfam PF02152 Dihydroneopterin aldolase 6 116 1.5E-28 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT56_02080 8d935152fb13db7ecdf4de38b4f1ffb7 119 TIGRFAM TIGR00526 folB_dom: FolB domain 5 117 1.3E-19 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT56_02080 8d935152fb13db7ecdf4de38b4f1ffb7 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 5 116 1.5E-24 T 11-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APT56_02080 8d935152fb13db7ecdf4de38b4f1ffb7 119 Gene3D G3DSA:3.30.1130.10 1 119 7.1E-37 T 11-10-2018 APT56_14530 89324087a2ebe19cd6c6f51dacf52d0a 125 Pfam PF04241 Protein of unknown function (DUF423) 20 106 8.7E-28 T 11-10-2018 IPR006696 Protein of unknown function DUF423 APT56_26545 c694c3657ca52520424bbe28261fed15 413 SUPERFAMILY SSF53383 12 399 1.77E-90 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APT56_26545 c694c3657ca52520424bbe28261fed15 413 Gene3D G3DSA:3.40.640.10 68 290 4.5E-118 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APT56_26545 c694c3657ca52520424bbe28261fed15 413 Pfam PF00155 Aminotransferase class I and II 61 394 3.1E-40 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APT56_26545 c694c3657ca52520424bbe28261fed15 413 Gene3D G3DSA:3.90.1150.10 22 398 4.5E-118 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APT56_01570 df9bf090ba3f5d3022fbaf57ccc7bd2d 369 SUPERFAMILY SSF52540 13 159 3.62E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_01570 df9bf090ba3f5d3022fbaf57ccc7bd2d 369 Gene3D G3DSA:3.40.50.300 14 188 8.6E-24 T 11-10-2018 APT56_01570 df9bf090ba3f5d3022fbaf57ccc7bd2d 369 Pfam PF05128 Domain of unknown function (DUF697) 225 367 4.1E-8 T 11-10-2018 IPR021147 Protein of unknown function DUF697 APT56_01570 df9bf090ba3f5d3022fbaf57ccc7bd2d 369 Pfam PF01926 50S ribosome-binding GTPase 31 151 7.8E-12 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_16870 0c18242a8dd6d39702d3053c44a69905 348 Gene3D G3DSA:3.30.1370.60 75 324 1.6E-104 T 11-10-2018 APT56_16870 0c18242a8dd6d39702d3053c44a69905 348 Pfam PF02615 Malate/L-lactate dehydrogenase 13 341 1.4E-109 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 APT56_16870 0c18242a8dd6d39702d3053c44a69905 348 Gene3D G3DSA:1.10.1530.10 20 344 1.6E-104 T 11-10-2018 APT56_16870 0c18242a8dd6d39702d3053c44a69905 348 SUPERFAMILY SSF89733 11 345 5.36E-104 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 APT56_25580 ae786a512352a563f4ba1f61335b5966 112 Pfam PF05939 Phage minor tail protein 4 110 8.0E-34 T 11-10-2018 IPR010265 Bacteriophage lambda, GpM, minor tail APT56_18710 3b0d1e6ef2a33cb3f396c2b149cc0a6f 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 305 5.0E-43 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_18710 3b0d1e6ef2a33cb3f396c2b149cc0a6f 307 Gene3D G3DSA:1.10.3720.10 86 298 2.5E-26 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18710 3b0d1e6ef2a33cb3f396c2b149cc0a6f 307 SUPERFAMILY SSF161098 92 291 3.27E-19 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00450 f74ed35add1a03c4c53ef95674cd7ee1 579 Pfam PF02538 Hydantoinase B/oxoprolinase 20 543 4.9E-170 T 11-10-2018 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_04180 25082353641b9e0350eb4de9bdc08a39 501 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 7.3E-155 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane APT56_08080 9b18eec8073addeb86342d996a2bae69 124 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 1.9E-33 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08080 9b18eec8073addeb86342d996a2bae69 124 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.908 T 11-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 APT56_08080 9b18eec8073addeb86342d996a2bae69 124 SUPERFAMILY SSF54995 1 103 7.98E-37 T 11-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08080 9b18eec8073addeb86342d996a2bae69 124 Gene3D G3DSA:3.30.70.60 1 92 3.4E-32 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 APT56_08080 9b18eec8073addeb86342d996a2bae69 124 Pfam PF01250 Ribosomal protein S6 3 91 1.7E-27 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_27345 56ddd5b296d451395c9c8bbe867dcdd6 284 SUPERFAMILY SSF53448 15 246 3.26E-37 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_27345 56ddd5b296d451395c9c8bbe867dcdd6 284 Pfam PF00535 Glycosyl transferase family 2 18 170 1.1E-18 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_27345 56ddd5b296d451395c9c8bbe867dcdd6 284 Gene3D G3DSA:3.90.550.10 9 243 1.8E-30 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_19810 5574bb1b0e5fae492a069ac40b3971d6 569 Pfam PF08479 POTRA domain, ShlB-type 75 147 1.4E-17 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type APT56_19810 5574bb1b0e5fae492a069ac40b3971d6 569 Gene3D G3DSA:2.40.160.50 181 565 2.9E-58 T 11-10-2018 APT56_19810 5574bb1b0e5fae492a069ac40b3971d6 569 Gene3D G3DSA:3.10.20.310 65 147 4.2E-14 T 11-10-2018 APT56_19810 5574bb1b0e5fae492a069ac40b3971d6 569 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 240 529 4.8E-18 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal APT56_18955 1437d773e3d2891d08f5ef85ab87329e 167 SUPERFAMILY SSF54593 12 137 3.76E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_18955 1437d773e3d2891d08f5ef85ab87329e 167 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 20 134 1.5E-9 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APT56_18955 1437d773e3d2891d08f5ef85ab87329e 167 Gene3D G3DSA:3.10.180.10 14 148 3.0E-39 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_00020 83f1df1823ecf0154ac31369de14c554 174 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 160 26.394 T 11-10-2018 IPR022973 Ribosomal protein L10 APT56_00020 83f1df1823ecf0154ac31369de14c554 174 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 71 143 9.0E-4 T 11-10-2018 APT56_00020 83f1df1823ecf0154ac31369de14c554 174 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 11-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_00020 83f1df1823ecf0154ac31369de14c554 174 Gene3D G3DSA:3.30.70.1730 3 133 2.7E-33 T 11-10-2018 APT56_00020 83f1df1823ecf0154ac31369de14c554 174 Pfam PF00466 Ribosomal protein L10 4 100 1.4E-21 T 11-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 APT56_00020 83f1df1823ecf0154ac31369de14c554 174 SUPERFAMILY SSF160369 3 171 9.15E-53 T 11-10-2018 APT56_09925 d2c4147496dca6d211ef14e9030be23e 499 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APT56_09925 d2c4147496dca6d211ef14e9030be23e 499 Pfam PF00171 Aldehyde dehydrogenase family 32 492 4.1E-167 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_09925 d2c4147496dca6d211ef14e9030be23e 499 Gene3D G3DSA:3.40.309.10 270 462 1.6E-173 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_09925 d2c4147496dca6d211ef14e9030be23e 499 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_09925 d2c4147496dca6d211ef14e9030be23e 499 SUPERFAMILY SSF53720 8 497 6.54E-164 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_09925 d2c4147496dca6d211ef14e9030be23e 499 Gene3D G3DSA:3.40.605.10 34 492 1.6E-173 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_14345 5ce801c70b3cc6be56a063818b465149 95 Pfam PF04070 Domain of unknown function (DUF378) 33 88 6.0E-10 T 11-10-2018 IPR007211 Protein of unknown function DUF378 APT56_01015 b09d17048541fdb5f447ec4585507c14 490 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 475 1.1E-108 T 11-10-2018 IPR010352 Protein of unknown function DUF945 APT56_07955 388d18cb66fc63d82fe14cbe93b886f6 208 SUPERFAMILY SSF102405 9 188 4.43E-57 T 11-10-2018 APT56_07955 388d18cb66fc63d82fe14cbe93b886f6 208 Gene3D G3DSA:3.40.50.450 3 205 1.4E-62 T 11-10-2018 APT56_07955 388d18cb66fc63d82fe14cbe93b886f6 208 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 17 190 4.3E-44 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG APT56_07955 388d18cb66fc63d82fe14cbe93b886f6 208 Pfam PF03641 Possible lysine decarboxylase 59 189 2.3E-33 T 11-10-2018 IPR031100 LOG family APT56_21490 4639fe45c68c3fe43158886749245ba6 404 SUPERFAMILY SSF103473 10 389 8.63E-50 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_21490 4639fe45c68c3fe43158886749245ba6 404 Pfam PF07690 Major Facilitator Superfamily 21 325 2.3E-27 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_21490 4639fe45c68c3fe43158886749245ba6 404 Gene3D G3DSA:1.20.1250.20 12 386 1.9E-45 T 11-10-2018 APT56_04205 671c68f0844803c3ed5518a44c8638ed 256 Pfam PF04402 Protein of unknown function (DUF541) 51 252 3.7E-26 T 11-10-2018 IPR007497 Protein of unknown function DUF541 APT56_04205 671c68f0844803c3ed5518a44c8638ed 256 Gene3D G3DSA:3.30.110.170 52 250 1.2E-19 T 11-10-2018 APT56_04205 671c68f0844803c3ed5518a44c8638ed 256 Gene3D G3DSA:3.30.70.2970 62 166 1.2E-19 T 11-10-2018 APT56_08660 3f499629999278968cfed17cd0d085c2 302 SUPERFAMILY SSF103481 194 291 1.23E-7 T 11-10-2018 APT56_08660 3f499629999278968cfed17cd0d085c2 302 SUPERFAMILY SSF103481 51 144 2.35E-8 T 11-10-2018 APT56_08660 3f499629999278968cfed17cd0d085c2 302 Pfam PF00892 EamA-like transporter family 165 289 6.6E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_08660 3f499629999278968cfed17cd0d085c2 302 Pfam PF00892 EamA-like transporter family 11 141 1.6E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_05405 fad77ef87e8a1b8e147961ade785c245 691 Pfam PF00593 TonB dependent receptor 273 689 1.2E-47 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_05405 fad77ef87e8a1b8e147961ade785c245 691 Pfam PF07715 TonB-dependent Receptor Plug Domain 45 150 1.2E-16 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_05405 fad77ef87e8a1b8e147961ade785c245 691 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 48 689 4.5E-74 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_05405 fad77ef87e8a1b8e147961ade785c245 691 Gene3D G3DSA:2.40.170.20 37 691 4.0E-185 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_05405 fad77ef87e8a1b8e147961ade785c245 691 SUPERFAMILY SSF56935 22 690 2.56E-104 T 11-10-2018 APT56_06905 e68279dc44418c8dbd309a5f0f11fee4 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 8 356 4.2E-52 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 APT56_06905 e68279dc44418c8dbd309a5f0f11fee4 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 3 355 2.6E-99 T 11-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 APT56_00425 2b18b6328601ddbb7bed7d21388f818d 312 SUPERFAMILY SSF52283 34 124 2.67E-7 T 11-10-2018 APT56_00425 2b18b6328601ddbb7bed7d21388f818d 312 Gene3D G3DSA:3.40.50.720 94 278 1.3E-105 T 11-10-2018 APT56_00425 2b18b6328601ddbb7bed7d21388f818d 312 SUPERFAMILY SSF51735 96 278 1.97E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_00425 2b18b6328601ddbb7bed7d21388f818d 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 103 277 2.1E-45 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_00425 2b18b6328601ddbb7bed7d21388f818d 312 Gene3D G3DSA:3.40.50.720 16 312 1.3E-105 T 11-10-2018 APT56_25130 d02b822a64e1570abd2702122440ccb9 650 SUPERFAMILY SSF50998 319 606 5.18E-13 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily APT56_25130 d02b822a64e1570abd2702122440ccb9 650 Gene3D G3DSA:2.130.10.10 498 624 8.8E-8 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_05175 25698060e5f2c0ae792b917c573edd0f 295 SUPERFAMILY SSF103481 33 135 4.05E-15 T 11-10-2018 APT56_05175 25698060e5f2c0ae792b917c573edd0f 295 SUPERFAMILY SSF103481 184 282 3.01E-15 T 11-10-2018 APT56_05175 25698060e5f2c0ae792b917c573edd0f 295 Pfam PF00892 EamA-like transporter family 149 278 5.2E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_05175 25698060e5f2c0ae792b917c573edd0f 295 Pfam PF00892 EamA-like transporter family 2 133 3.6E-22 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_11320 5a45f403fd6205ad7b0ad0d1da8de3a7 129 Gene3D G3DSA:3.30.1330.80 5 127 8.2E-15 T 11-10-2018 APT56_11320 5a45f403fd6205ad7b0ad0d1da8de3a7 129 SUPERFAMILY SSF117856 7 124 2.22E-20 T 11-10-2018 APT56_11320 5a45f403fd6205ad7b0ad0d1da8de3a7 129 Pfam PF03479 Domain of unknown function (DUF296) 14 124 5.4E-14 T 11-10-2018 IPR005175 PPC domain APT56_26060 e43c17e1c81cb81554a8c5b85f83008b 444 Pfam PF11299 Protein of unknown function (DUF3100) 31 270 2.1E-87 T 11-10-2018 IPR021450 Protein of unknown function DUF3100 APT56_23935 3b04513156e3e40309836a3c8911e21a 358 Pfam PF01545 Cation efflux family 26 283 1.3E-34 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT56_23935 3b04513156e3e40309836a3c8911e21a 358 Gene3D G3DSA:1.20.1510.10 19 155 5.6E-19 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APT56_23935 3b04513156e3e40309836a3c8911e21a 358 Gene3D G3DSA:1.20.1510.10 213 283 1.2E-8 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APT56_23935 3b04513156e3e40309836a3c8911e21a 358 SUPERFAMILY SSF161111 16 284 5.1E-50 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APT56_23935 3b04513156e3e40309836a3c8911e21a 358 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 19 335 7.4E-67 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APT56_16755 6036bb4f34a6e25329b61085aa532d35 321 Gene3D G3DSA:3.40.50.720 22 314 6.4E-118 T 11-10-2018 APT56_16755 6036bb4f34a6e25329b61085aa532d35 321 Gene3D G3DSA:3.40.50.720 107 292 6.4E-118 T 11-10-2018 APT56_16755 6036bb4f34a6e25329b61085aa532d35 321 SUPERFAMILY SSF51735 109 289 3.39E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_16755 6036bb4f34a6e25329b61085aa532d35 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 115 289 2.3E-54 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_16755 6036bb4f34a6e25329b61085aa532d35 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 38 320 7.5E-19 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_16755 6036bb4f34a6e25329b61085aa532d35 321 SUPERFAMILY SSF52283 12 141 2.46E-29 T 11-10-2018 APT56_22255 a617d50c9dda0136a1422ae6148c1470 302 Gene3D G3DSA:3.40.800.10 4 294 8.7E-75 T 11-10-2018 APT56_22255 a617d50c9dda0136a1422ae6148c1470 302 SUPERFAMILY SSF52768 13 287 3.78E-72 T 11-10-2018 IPR023696 Ureohydrolase domain superfamily APT56_22255 a617d50c9dda0136a1422ae6148c1470 302 Pfam PF00491 Arginase family 15 285 2.2E-67 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_22255 a617d50c9dda0136a1422ae6148c1470 302 PIRSF PIRSF036979 8 292 1.5E-64 T 11-10-2018 IPR006035 Ureohydrolase GO:0046872 APT56_00185 0f8f72f8b148603986fa9cc9388daba5 145 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 6 137 3.9E-20 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 APT56_04535 34972c4a944b85bdddeff733e43526be 287 Pfam PF12697 Alpha/beta hydrolase family 9 241 9.0E-13 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_04535 34972c4a944b85bdddeff733e43526be 287 PIRSF PIRSF017388 2 157 8.1E-23 T 11-10-2018 IPR012354 Esterase/lipase GO:0052689 APT56_04535 34972c4a944b85bdddeff733e43526be 287 PIRSF PIRSF017388 159 255 1.3E-14 T 11-10-2018 IPR012354 Esterase/lipase GO:0052689 APT56_04535 34972c4a944b85bdddeff733e43526be 287 Gene3D G3DSA:3.40.50.1820 1 253 2.7E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_04535 34972c4a944b85bdddeff733e43526be 287 SUPERFAMILY SSF53474 8 252 1.66E-30 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_04075 27146133fb438269abc3ecfe25d3daa0 165 SUPERFAMILY SSF55826 14 161 6.02E-32 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APT56_04075 27146133fb438269abc3ecfe25d3daa0 165 Pfam PF04073 Aminoacyl-tRNA editing domain 36 151 1.5E-25 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT56_04075 27146133fb438269abc3ecfe25d3daa0 165 Gene3D G3DSA:3.90.960.10 9 164 1.1E-39 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APT56_22455 44f46a41e23ca4f7457e15909eefd838 163 Gene3D G3DSA:3.30.450.40 24 154 8.5E-7 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_22455 44f46a41e23ca4f7457e15909eefd838 163 SUPERFAMILY SSF55781 26 148 9.16E-10 T 11-10-2018 APT56_21815 15cf5af331b65292750ba8127def5e32 200 Pfam PF01810 LysE type translocator 13 198 1.5E-40 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_19550 a14b461c3bf94f8f39b0ecb6f939c608 378 Pfam PF01966 HD domain 48 140 1.9E-5 T 11-10-2018 IPR006674 HD domain APT56_19550 a14b461c3bf94f8f39b0ecb6f939c608 378 Gene3D G3DSA:3.40.50.300 232 378 1.2E-23 T 11-10-2018 APT56_19550 a14b461c3bf94f8f39b0ecb6f939c608 378 SUPERFAMILY SSF52540 238 371 2.32E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19550 a14b461c3bf94f8f39b0ecb6f939c608 378 Gene3D G3DSA:1.10.3210.10 32 186 1.6E-10 T 11-10-2018 APT56_19550 a14b461c3bf94f8f39b0ecb6f939c608 378 Pfam PF13671 AAA domain 239 362 1.5E-12 T 11-10-2018 APT56_19550 a14b461c3bf94f8f39b0ecb6f939c608 378 SUPERFAMILY SSF109604 41 176 1.47E-15 T 11-10-2018 APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 Gene3D G3DSA:2.120.10.30 2 291 9.8E-85 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 SUPERFAMILY SSF63829 9 288 3.11E-56 T 11-10-2018 APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 95 116 1.3E-26 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 161 181 1.3E-26 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 16 33 1.3E-26 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 138 160 1.3E-26 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 244 262 1.3E-26 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 202 219 1.3E-26 T 11-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) APT56_24580 ecaefb329dc1024e6bbe4b91064fc62a 293 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 15 262 4.8E-70 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region APT56_24295 0999fb196529b753d8c5992ea9f96cb4 183 Pfam PF06052 3-hydroxyanthranilic acid dioxygenase 6 154 1.0E-44 T 11-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 APT56_24295 0999fb196529b753d8c5992ea9f96cb4 183 TIGRFAM TIGR03037 anthran_nbaC: 3-hydroxyanthranilate 3,4-dioxygenase 8 166 1.6E-77 T 11-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 APT56_24295 0999fb196529b753d8c5992ea9f96cb4 183 Gene3D G3DSA:2.60.120.10 9 174 1.0E-63 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_24295 0999fb196529b753d8c5992ea9f96cb4 183 Hamap MF_00825 3-hydroxyanthranilate 3,4-dioxygenase [nbaC]. 4 172 33.317 T 11-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 APT56_24295 0999fb196529b753d8c5992ea9f96cb4 183 SUPERFAMILY SSF51182 5 172 7.97E-52 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_20810 c5c160cd1e4c3eaebef1b7b4bbe00185 218 SMART SM00345 15 73 4.3E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20810 c5c160cd1e4c3eaebef1b7b4bbe00185 218 Gene3D G3DSA:1.10.10.10 7 74 1.7E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_20810 c5c160cd1e4c3eaebef1b7b4bbe00185 218 Pfam PF07729 FCD domain 83 204 3.3E-29 T 11-10-2018 IPR011711 GntR, C-terminal APT56_20810 c5c160cd1e4c3eaebef1b7b4bbe00185 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 73 2.8E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APT56_20810 c5c160cd1e4c3eaebef1b7b4bbe00185 218 SUPERFAMILY SSF48008 79 212 1.62E-28 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_20810 c5c160cd1e4c3eaebef1b7b4bbe00185 218 SUPERFAMILY SSF46785 9 98 3.42E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_20810 c5c160cd1e4c3eaebef1b7b4bbe00185 218 SMART SM00895 83 205 1.1E-22 T 11-10-2018 IPR011711 GntR, C-terminal APT56_20810 c5c160cd1e4c3eaebef1b7b4bbe00185 218 Gene3D G3DSA:1.20.120.530 77 217 1.2E-34 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APT56_15275 bc9f0d68503973058e814a8a27007efa 160 Pfam PF01899 Na+/H+ ion antiporter subunit 11 158 2.4E-39 T 11-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 APT56_15275 bc9f0d68503973058e814a8a27007efa 160 PIRSF PIRSF019239 2 160 8.4E-35 T 11-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 APT56_01440 ece493007afcbe2557f63176339aced0 201 SUPERFAMILY SSF52833 45 200 2.88E-52 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_01440 ece493007afcbe2557f63176339aced0 201 Gene3D G3DSA:3.40.30.10 39 198 1.0E-54 T 11-10-2018 APT56_01440 ece493007afcbe2557f63176339aced0 201 Pfam PF02630 SCO1/SenC 41 177 1.6E-45 T 11-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_23495 458d5d80be6f90974b6d460a2ae78f6c 172 Pfam PF02308 MgtC family 32 156 2.3E-39 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_23495 458d5d80be6f90974b6d460a2ae78f6c 172 PRINTS PR01837 MgtC/SapB protein signature 81 103 4.4E-42 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_23495 458d5d80be6f90974b6d460a2ae78f6c 172 PRINTS PR01837 MgtC/SapB protein signature 35 54 4.4E-42 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_23495 458d5d80be6f90974b6d460a2ae78f6c 172 PRINTS PR01837 MgtC/SapB protein signature 110 134 4.4E-42 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_23495 458d5d80be6f90974b6d460a2ae78f6c 172 PRINTS PR01837 MgtC/SapB protein signature 54 72 4.4E-42 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 APT56_21520 7778663e10299b21257735484880c8c8 260 SUPERFAMILY SSF56529 12 257 3.36E-38 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_21520 7778663e10299b21257735484880c8c8 260 Gene3D G3DSA:3.90.850.10 10 259 2.2E-53 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_01515 a9f1780742aca9de7349bb109c464f3a 481 Pfam PF02219 Methylenetetrahydrofolate reductase 71 207 7.7E-7 T 11-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 APT56_01515 a9f1780742aca9de7349bb109c464f3a 481 SUPERFAMILY SSF51730 2 277 3.14E-26 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like APT56_01515 a9f1780742aca9de7349bb109c464f3a 481 Gene3D G3DSA:3.20.20.220 6 276 1.3E-13 T 11-10-2018 APT56_01515 a9f1780742aca9de7349bb109c464f3a 481 Pfam PF12225 Methylene-tetrahydrofolate reductase C terminal 377 452 2.0E-18 T 11-10-2018 IPR022026 Methylene-tetrahydrofolate reductase C-terminal APT56_21275 336c656629f6d04d4f4fe050a581ffc1 416 Gene3D G3DSA:3.50.50.60 90 403 6.3E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_21275 336c656629f6d04d4f4fe050a581ffc1 416 Gene3D G3DSA:3.50.50.60 5 52 5.0E-13 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_21275 336c656629f6d04d4f4fe050a581ffc1 416 Gene3D G3DSA:3.30.9.10 135 357 6.3E-38 T 11-10-2018 APT56_21275 336c656629f6d04d4f4fe050a581ffc1 416 SUPERFAMILY SSF51905 4 415 8.93E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_21275 336c656629f6d04d4f4fe050a581ffc1 416 Pfam PF01266 FAD dependent oxidoreductase 5 396 4.1E-50 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_10630 655decbb458cb3b03c58c587ff9bf4a3 86 SUPERFAMILY SSF47336 1 83 1.7E-14 T 11-10-2018 IPR036736 ACP-like superfamily APT56_10630 655decbb458cb3b03c58c587ff9bf4a3 86 Gene3D G3DSA:1.10.1200.10 3 86 9.3E-21 T 11-10-2018 IPR036736 ACP-like superfamily APT56_10630 655decbb458cb3b03c58c587ff9bf4a3 86 Pfam PF00550 Phosphopantetheine attachment site 7 80 2.5E-10 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APT56_02385 da26a7b15307060ebfd52225e9aa3bc5 303 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 90 301 4.4E-68 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 APT56_02385 da26a7b15307060ebfd52225e9aa3bc5 303 SUPERFAMILY SSF56529 78 302 1.44E-71 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_02385 da26a7b15307060ebfd52225e9aa3bc5 303 Gene3D G3DSA:3.90.850.10 84 303 7.5E-80 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 APT56_24170 cd3791a4937c8cde4a5eaf660faed2ff 420 Gene3D G3DSA:1.20.1250.20 217 402 4.7E-16 T 11-10-2018 APT56_24170 cd3791a4937c8cde4a5eaf660faed2ff 420 Pfam PF07690 Major Facilitator Superfamily 19 298 1.6E-19 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_24170 cd3791a4937c8cde4a5eaf660faed2ff 420 Gene3D G3DSA:1.20.1250.20 10 190 3.7E-13 T 11-10-2018 APT56_24170 cd3791a4937c8cde4a5eaf660faed2ff 420 SUPERFAMILY SSF103473 13 399 1.7E-35 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_13575 40a9a614dfbeef3adb3784856c7453c9 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 255 3.3E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_13575 40a9a614dfbeef3adb3784856c7453c9 269 SUPERFAMILY SSF161098 62 248 6.02E-32 T 11-10-2018 IPR035906 MetI-like superfamily APT56_13575 40a9a614dfbeef3adb3784856c7453c9 269 Gene3D G3DSA:1.10.3720.10 63 255 2.9E-24 T 11-10-2018 IPR035906 MetI-like superfamily APT56_11225 2add8aa8e655da87913177f94e40b5bd 405 Pfam PF13458 Periplasmic binding protein 29 365 7.6E-95 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_11225 2add8aa8e655da87913177f94e40b5bd 405 SUPERFAMILY SSF53822 29 400 5.38E-94 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_11225 2add8aa8e655da87913177f94e40b5bd 405 Gene3D G3DSA:3.40.50.2300 52 358 8.5E-110 T 11-10-2018 APT56_11225 2add8aa8e655da87913177f94e40b5bd 405 Gene3D G3DSA:3.40.50.2300 148 365 8.5E-110 T 11-10-2018 APT56_03605 19c9858e9b5affbff84a3e358ec0339d 321 Gene3D G3DSA:1.10.10.60 219 320 7.6E-17 T 11-10-2018 APT56_03605 19c9858e9b5affbff84a3e358ec0339d 321 Pfam PF12833 Helix-turn-helix domain 241 317 2.4E-14 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_03605 19c9858e9b5affbff84a3e358ec0339d 321 SUPERFAMILY SSF52317 1 199 1.01E-25 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_03605 19c9858e9b5affbff84a3e358ec0339d 321 Pfam PF01965 DJ-1/PfpI family 1 182 2.9E-7 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_03605 19c9858e9b5affbff84a3e358ec0339d 321 Gene3D G3DSA:3.40.50.880 1 207 1.9E-34 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_03605 19c9858e9b5affbff84a3e358ec0339d 321 SMART SM00342 234 316 1.5E-9 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_19955 8d8026c1a6085abed2394f5301cb8408 300 SUPERFAMILY SSF53448 31 232 6.47E-51 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_19955 8d8026c1a6085abed2394f5301cb8408 300 Pfam PF00535 Glycosyl transferase family 2 34 189 8.0E-27 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_19955 8d8026c1a6085abed2394f5301cb8408 300 Gene3D G3DSA:3.90.550.10 8 255 7.0E-50 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_19535 66adcf4bbf9be1896bec9e2eeae30fe8 399 Gene3D G3DSA:1.20.58.710 160 257 3.0E-77 T 11-10-2018 APT56_19535 66adcf4bbf9be1896bec9e2eeae30fe8 399 Gene3D G3DSA:3.40.710.10 107 380 3.0E-77 T 11-10-2018 APT56_19535 66adcf4bbf9be1896bec9e2eeae30fe8 399 SUPERFAMILY SSF56601 54 388 4.69E-69 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_19535 66adcf4bbf9be1896bec9e2eeae30fe8 399 Pfam PF00144 Beta-lactamase 114 395 7.9E-23 T 11-10-2018 IPR001466 Beta-lactamase-related APT56_08335 720738594da12e7c386d495c67f5fa7e 253 Gene3D G3DSA:3.40.50.300 4 250 2.3E-52 T 11-10-2018 APT56_08335 720738594da12e7c386d495c67f5fa7e 253 SUPERFAMILY SSF52540 6 247 5.63E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08335 720738594da12e7c386d495c67f5fa7e 253 SMART SM00382 31 225 4.2E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08335 720738594da12e7c386d495c67f5fa7e 253 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 247 2.1E-5 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_08335 720738594da12e7c386d495c67f5fa7e 253 Pfam PF00005 ABC transporter 23 178 6.0E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19545 07f26b7322ed3e8c636a4913b5938df5 289 SUPERFAMILY SSF56091 15 244 4.03E-40 T 11-10-2018 APT56_19545 07f26b7322ed3e8c636a4913b5938df5 289 Gene3D G3DSA:3.30.470.30 37 204 3.3E-18 T 11-10-2018 APT56_19545 07f26b7322ed3e8c636a4913b5938df5 289 Pfam PF09414 RNA ligase 48 230 2.6E-30 T 11-10-2018 IPR021122 RNA ligase domain, REL/Rln2 APT56_03525 a6c4b97008e0c74474cf17625b6c3d30 212 PIRSF PIRSF006324 1 209 9.9E-53 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_03525 a6c4b97008e0c74474cf17625b6c3d30 212 Pfam PF01810 LysE type translocator 17 206 8.1E-31 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_26175 ec0631fe718269e7c92c347ae2a6162f 207 PIRSF PIRSF006324 1 202 2.3E-46 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_26175 ec0631fe718269e7c92c347ae2a6162f 207 Pfam PF01810 LysE type translocator 9 200 1.6E-30 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_16730 7b2a274affd9ec646d7abfaf73be5334 129 Pfam PF04134 Protein of unknown function, DUF393 11 116 1.5E-9 T 11-10-2018 IPR007263 Protein of unknown function DUF393 APT56_18540 60a2baaa6d871e7a48c0ea9c35af81e3 132 SUPERFAMILY SSF51182 55 116 5.58E-11 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_18540 60a2baaa6d871e7a48c0ea9c35af81e3 132 Pfam PF07883 Cupin domain 55 115 2.6E-7 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_18540 60a2baaa6d871e7a48c0ea9c35af81e3 132 Gene3D G3DSA:2.60.120.10 29 117 2.4E-13 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_18175 63a76af3b94c94dd00effd7ed7d10968 554 Pfam PF02470 MlaD protein 54 141 1.6E-10 T 11-10-2018 IPR003399 Mce/MlaD APT56_18175 63a76af3b94c94dd00effd7ed7d10968 554 Pfam PF02470 MlaD protein 172 232 5.4E-8 T 11-10-2018 IPR003399 Mce/MlaD APT56_18175 63a76af3b94c94dd00effd7ed7d10968 554 Pfam PF02470 MlaD protein 303 408 4.8E-12 T 11-10-2018 IPR003399 Mce/MlaD APT56_12010 a7b07bc18526333d2ae9abc0b9f8d5b7 230 PRINTS PR01008 Flagellar L-ring protein signature 191 205 6.3E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 APT56_12010 a7b07bc18526333d2ae9abc0b9f8d5b7 230 PRINTS PR01008 Flagellar L-ring protein signature 207 221 6.3E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 APT56_12010 a7b07bc18526333d2ae9abc0b9f8d5b7 230 PRINTS PR01008 Flagellar L-ring protein signature 170 186 6.3E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 APT56_12010 a7b07bc18526333d2ae9abc0b9f8d5b7 230 PRINTS PR01008 Flagellar L-ring protein signature 72 84 6.3E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 APT56_12010 a7b07bc18526333d2ae9abc0b9f8d5b7 230 PRINTS PR01008 Flagellar L-ring protein signature 144 159 6.3E-27 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 APT56_12010 a7b07bc18526333d2ae9abc0b9f8d5b7 230 Hamap MF_00415 Flagellar L-ring protein [flgH]. 6 228 26.353 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 APT56_12010 a7b07bc18526333d2ae9abc0b9f8d5b7 230 Pfam PF02107 Flagellar L-ring protein 48 229 1.2E-57 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 APT56_11550 20a95553022b22e37fa3863d28f74999 170 SUPERFAMILY SSF88946 13 100 4.32E-14 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APT56_11550 20a95553022b22e37fa3863d28f74999 170 SUPERFAMILY SSF88659 89 162 1.66E-12 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APT56_11550 20a95553022b22e37fa3863d28f74999 170 Pfam PF04542 Sigma-70 region 2 15 79 3.9E-14 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APT56_11550 20a95553022b22e37fa3863d28f74999 170 Pfam PF08281 Sigma-70, region 4 111 159 1.6E-13 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APT56_11550 20a95553022b22e37fa3863d28f74999 170 Gene3D G3DSA:1.10.10.10 106 169 3.1E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_11550 20a95553022b22e37fa3863d28f74999 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 161 2.6E-24 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APT56_11550 20a95553022b22e37fa3863d28f74999 170 Gene3D G3DSA:1.10.1740.10 5 80 2.8E-7 T 11-10-2018 APT56_26200 542aeb38aeab351ae0211ba93c87c78f 363 SUPERFAMILY SSF53187 58 319 5.54E-16 T 11-10-2018 APT56_26200 542aeb38aeab351ae0211ba93c87c78f 363 Pfam PF10994 Protein of unknown function (DUF2817) 8 347 1.2E-120 T 11-10-2018 IPR021259 Protein of unknown function DUF2817 APT56_10080 4ad6da6d66da42793adb42c898334426 325 SUPERFAMILY SSF52980 12 210 5.04E-19 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APT56_10080 4ad6da6d66da42793adb42c898334426 325 Pfam PF09588 YqaJ-like viral recombinase domain 12 165 9.6E-14 T 11-10-2018 IPR019080 YqaJ viral recombinase APT56_10080 4ad6da6d66da42793adb42c898334426 325 Gene3D G3DSA:3.90.320.10 10 209 1.4E-20 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal APT56_05380 371d81fe621b229ca1c6c09e3400da35 306 Gene3D G3DSA:3.20.10.10 133 295 8.2E-50 T 11-10-2018 APT56_05380 371d81fe621b229ca1c6c09e3400da35 306 SUPERFAMILY SSF56752 1 303 4.45E-99 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 APT56_05380 371d81fe621b229ca1c6c09e3400da35 306 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 306 3.3E-133 T 11-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 APT56_05380 371d81fe621b229ca1c6c09e3400da35 306 Gene3D G3DSA:3.30.470.10 7 132 1.2E-40 T 11-10-2018 APT56_05380 371d81fe621b229ca1c6c09e3400da35 306 Pfam PF01063 Amino-transferase class IV 37 267 1.4E-51 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 APT56_16080 51203ed69d41e612c74c7b66b0d9dd78 232 Pfam PF11445 Protein of unknown function (DUF2894) 17 208 6.5E-57 T 11-10-2018 IPR021549 Protein of unknown function DUF2894 APT56_19075 b4a94818830272abb7b5a54c5032eb1f 307 Gene3D G3DSA:3.40.50.300 1 234 4.1E-65 T 11-10-2018 APT56_19075 b4a94818830272abb7b5a54c5032eb1f 307 SMART SM00382 30 211 1.9E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_19075 b4a94818830272abb7b5a54c5032eb1f 307 Pfam PF00005 ABC transporter 21 163 1.9E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_19075 b4a94818830272abb7b5a54c5032eb1f 307 SUPERFAMILY SSF52540 2 229 1.74E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_19075 b4a94818830272abb7b5a54c5032eb1f 307 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_23990 593d4b271734425f1a02f3155f4915e5 140 SUPERFAMILY SSF52833 3 138 3.2E-40 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_23990 593d4b271734425f1a02f3155f4915e5 140 Gene3D G3DSA:3.40.30.10 1 140 5.4E-58 T 11-10-2018 APT56_23990 593d4b271734425f1a02f3155f4915e5 140 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 8.5E-42 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 APT56_23990 593d4b271734425f1a02f3155f4915e5 140 Pfam PF03960 ArsC family 7 115 6.6E-20 T 11-10-2018 IPR006660 Arsenate reductase-like APT56_19950 c6a8a96ed4fc066d4140c5f1e6ea6679 438 Pfam PF01943 Polysaccharide biosynthesis protein 15 291 4.8E-18 T 11-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 APT56_19450 33c8dcfea4290eae2e408fb2b443a721 359 SUPERFAMILY SSF56112 19 336 5.12E-54 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_19450 33c8dcfea4290eae2e408fb2b443a721 359 Pfam PF01636 Phosphotransferase enzyme family 44 279 6.4E-28 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase APT56_19450 33c8dcfea4290eae2e408fb2b443a721 359 Gene3D G3DSA:3.90.1200.10 130 325 5.4E-25 T 11-10-2018 APT56_00445 aad6280554ba79ab2d1a88d8ab7f2f3f 685 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 3 181 3.4E-61 T 11-10-2018 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_00445 aad6280554ba79ab2d1a88d8ab7f2f3f 685 Pfam PF01968 Hydantoinase/oxoprolinase 202 488 1.8E-92 T 11-10-2018 IPR002821 Hydantoinase A/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 APT56_00445 aad6280554ba79ab2d1a88d8ab7f2f3f 685 Gene3D G3DSA:3.30.420.40 1 93 2.6E-7 T 11-10-2018 APT56_00445 aad6280554ba79ab2d1a88d8ab7f2f3f 685 SUPERFAMILY SSF53067 1 482 3.44E-13 T 11-10-2018 APT56_14285 c0052a86067743f013d52718ae3c9cde 301 SMART SM00052 10 256 1.6E-61 T 11-10-2018 IPR001633 EAL domain APT56_14285 c0052a86067743f013d52718ae3c9cde 301 SUPERFAMILY SSF141868 25 261 2.09E-66 T 11-10-2018 IPR035919 EAL domain superfamily APT56_14285 c0052a86067743f013d52718ae3c9cde 301 Gene3D G3DSA:3.20.20.450 20 268 8.7E-72 T 11-10-2018 IPR035919 EAL domain superfamily APT56_14285 c0052a86067743f013d52718ae3c9cde 301 Pfam PF00563 EAL domain 26 251 3.5E-60 T 11-10-2018 IPR001633 EAL domain APT56_12210 34edf50b063a3c135cb17027c0f2073e 166 Pfam PF01863 Protein of unknown function DUF45 93 152 2.2E-10 T 11-10-2018 IPR002725 Protein of unknown function DUF45 APT56_12210 34edf50b063a3c135cb17027c0f2073e 166 Gene3D G3DSA:3.30.2010.10 70 159 3.0E-6 T 11-10-2018 APT56_26910 dc31b7e29d6ce6958f7ed0c5a722255f 422 Pfam PF00501 AMP-binding enzyme 138 287 5.3E-14 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APT56_26910 dc31b7e29d6ce6958f7ed0c5a722255f 422 SUPERFAMILY SSF56801 122 390 1.16E-33 T 11-10-2018 APT56_26910 dc31b7e29d6ce6958f7ed0c5a722255f 422 Gene3D G3DSA:3.40.50.12780 2 326 3.9E-65 T 11-10-2018 APT56_26910 dc31b7e29d6ce6958f7ed0c5a722255f 422 Gene3D G3DSA:3.30.300.30 327 420 9.5E-13 T 11-10-2018 APT56_15090 57c5f050b08ac8a164fd51b0ca0fa1c5 223 Gene3D G3DSA:3.40.50.300 5 223 4.5E-67 T 11-10-2018 APT56_15090 57c5f050b08ac8a164fd51b0ca0fa1c5 223 Pfam PF00005 ABC transporter 26 171 1.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_15090 57c5f050b08ac8a164fd51b0ca0fa1c5 223 SUPERFAMILY SSF52540 7 221 9.09E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15090 57c5f050b08ac8a164fd51b0ca0fa1c5 223 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_15090 57c5f050b08ac8a164fd51b0ca0fa1c5 223 SMART SM00382 35 220 2.8E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_15405 311aca97683206e51300d73a9168820a 120 SUPERFAMILY SSF46894 11 115 6.24E-18 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_15405 311aca97683206e51300d73a9168820a 120 Pfam PF00486 Transcriptional regulatory protein, C terminal 34 115 1.8E-15 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_15405 311aca97683206e51300d73a9168820a 120 SMART SM00862 34 115 8.3E-12 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_15405 311aca97683206e51300d73a9168820a 120 Gene3D G3DSA:1.10.10.10 11 119 1.4E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18135 ca946e2645ad39ecab0559a22fbe802b 265 Gene3D G3DSA:3.40.50.1820 13 264 5.8E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18135 ca946e2645ad39ecab0559a22fbe802b 265 SUPERFAMILY SSF53474 16 262 6.31E-50 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18135 ca946e2645ad39ecab0559a22fbe802b 265 Pfam PF12697 Alpha/beta hydrolase family 28 254 6.4E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_01445 616f9755cdf910d2cad6cb46362d7deb 73 Pfam PF12512 Protein of unknown function (DUF3717) 4 68 5.1E-27 T 11-10-2018 IPR022191 Protein of unknown function DUF3717 APT56_04080 3e4f5ed852eedae0ad1b9bd29356a3f0 267 Gene3D G3DSA:3.40.50.300 2 258 2.8E-60 T 11-10-2018 APT56_04080 3e4f5ed852eedae0ad1b9bd29356a3f0 267 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_04080 3e4f5ed852eedae0ad1b9bd29356a3f0 267 SUPERFAMILY SSF52540 8 234 4.69E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_04080 3e4f5ed852eedae0ad1b9bd29356a3f0 267 Pfam PF00005 ABC transporter 33 171 3.2E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_04080 3e4f5ed852eedae0ad1b9bd29356a3f0 267 SMART SM00382 35 230 1.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_05350 567f5f77bd00bd07e1f661ad4882c5ec 288 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 28 261 3.5E-51 T 11-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related APT56_20385 34d04355d53ce5b23fdb094f6c2b71c7 184 Pfam PF03358 NADPH-dependent FMN reductase 5 146 2.1E-33 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 APT56_20385 34d04355d53ce5b23fdb094f6c2b71c7 184 SUPERFAMILY SSF52218 5 175 1.48E-43 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_20385 34d04355d53ce5b23fdb094f6c2b71c7 184 Gene3D G3DSA:3.40.50.360 4 183 2.1E-48 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_11595 1611d19851b33945e1a7d12f4ac780f6 443 Pfam PF00924 Mechanosensitive ion channel 146 397 3.9E-43 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APT56_11595 1611d19851b33945e1a7d12f4ac780f6 443 SUPERFAMILY SSF50182 185 252 1.08E-10 T 11-10-2018 IPR010920 LSM domain superfamily APT56_22785 c6d03d45c4b16bc67eb32dc22a9dee50 543 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 68 489 2.0E-88 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 APT56_22785 c6d03d45c4b16bc67eb32dc22a9dee50 543 SUPERFAMILY SSF56317 240 519 3.53E-32 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_22785 c6d03d45c4b16bc67eb32dc22a9dee50 543 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 9 527 20.987 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 APT56_22785 c6d03d45c4b16bc67eb32dc22a9dee50 543 Pfam PF00795 Carbon-nitrogen hydrolase 244 513 1.6E-22 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_22785 c6d03d45c4b16bc67eb32dc22a9dee50 543 Gene3D G3DSA:3.60.110.10 258 507 2.1E-12 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_00650 996a1db717947e70343ee97b730019eb 293 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 3 272 1.2E-111 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 APT56_00650 996a1db717947e70343ee97b730019eb 293 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 3 293 43.642 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 APT56_00650 996a1db717947e70343ee97b730019eb 293 Gene3D G3DSA:3.40.50.620 78 228 1.4E-90 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_00650 996a1db717947e70343ee97b730019eb 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.6E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_00650 996a1db717947e70343ee97b730019eb 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 196 204 1.6E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_00650 996a1db717947e70343ee97b730019eb 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 180 190 1.6E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_00650 996a1db717947e70343ee97b730019eb 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.6E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_00650 996a1db717947e70343ee97b730019eb 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.6E-13 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APT56_00650 996a1db717947e70343ee97b730019eb 293 Gene3D G3DSA:3.40.50.620 3 287 1.4E-90 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_00650 996a1db717947e70343ee97b730019eb 293 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 246 3.3E-37 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 APT56_00650 996a1db717947e70343ee97b730019eb 293 SUPERFAMILY SSF52374 3 266 1.1E-77 T 11-10-2018 APT56_13990 88e6eb5665bf9aec9f02736acfbdce19 163 Pfam PF00866 Ring hydroxylating beta subunit 24 154 2.3E-15 T 11-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 APT56_13990 88e6eb5665bf9aec9f02736acfbdce19 163 SUPERFAMILY SSF54427 9 162 3.4E-44 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_13990 88e6eb5665bf9aec9f02736acfbdce19 163 Gene3D G3DSA:3.10.450.50 4 163 8.1E-42 T 11-10-2018 APT56_20105 862582214f871582afa8ee588fc5fde8 387 Gene3D G3DSA:3.30.1540.10 227 318 1.9E-132 T 11-10-2018 APT56_20105 862582214f871582afa8ee588fc5fde8 387 Pfam PF02515 CoA-transferase family III 7 373 6.2E-130 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_20105 862582214f871582afa8ee588fc5fde8 387 SUPERFAMILY SSF89796 6 380 1.07E-134 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_20105 862582214f871582afa8ee588fc5fde8 387 Gene3D G3DSA:3.40.50.10540 7 336 1.9E-132 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_09385 1105602f346df4d7a4d5aa247e2f4e88 186 Pfam PF00583 Acetyltransferase (GNAT) family 58 143 6.2E-10 T 11-10-2018 IPR000182 GNAT domain APT56_09385 1105602f346df4d7a4d5aa247e2f4e88 186 TIGRFAM TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase 26 182 3.2E-67 T 11-10-2018 IPR012772 L-2,4-diaminobutyric acid acetyltransferase GO:0019491|GO:0033816 KEGG: 00260+2.3.1.178 APT56_09385 1105602f346df4d7a4d5aa247e2f4e88 186 Gene3D G3DSA:3.40.630.30 24 185 4.3E-52 T 11-10-2018 APT56_09385 1105602f346df4d7a4d5aa247e2f4e88 186 SUPERFAMILY SSF55729 25 145 5.32E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_17745 6e1863aa544a78ac2ad54bafd579b5a2 181 Pfam PF03350 Uncharacterized protein family, UPF0114 16 132 1.8E-40 T 11-10-2018 IPR005134 Uncharacterised protein family UPF0114 APT56_17745 6e1863aa544a78ac2ad54bafd579b5a2 181 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 181 90.913 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria APT56_17745 6e1863aa544a78ac2ad54bafd579b5a2 181 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 12 181 1.3E-57 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria APT56_13280 6c8f352f141b386a6f742d68f7e9affb 303 Gene3D G3DSA:3.40.190.10 168 267 2.0E-37 T 11-10-2018 APT56_13280 6c8f352f141b386a6f742d68f7e9affb 303 Gene3D G3DSA:3.40.190.10 94 277 2.0E-37 T 11-10-2018 APT56_13280 6c8f352f141b386a6f742d68f7e9affb 303 SUPERFAMILY SSF46785 4 113 3.85E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_13280 6c8f352f141b386a6f742d68f7e9affb 303 Pfam PF03466 LysR substrate binding domain 90 289 1.3E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_13280 6c8f352f141b386a6f742d68f7e9affb 303 SUPERFAMILY SSF53850 90 292 5.67E-36 T 11-10-2018 APT56_13280 6c8f352f141b386a6f742d68f7e9affb 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.2E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_13280 6c8f352f141b386a6f742d68f7e9affb 303 Gene3D G3DSA:1.10.10.10 3 92 8.2E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_07280 467a47283dd346156a96a3862be3012e 93 Pfam PF12365 Protein of unknown function (DUF3649) 60 85 1.8E-11 T 11-10-2018 IPR022109 Protein of unknown function DUF3649 APT56_01420 b9b1e642f45a48dba1399eba36156a8f 265 Pfam PF02104 SURF1 family 20 238 9.1E-28 T 11-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_13310 932d2318f6d3fc4acb25b929136879a9 437 Gene3D G3DSA:1.20.1250.20 21 435 3.0E-59 T 11-10-2018 APT56_13310 932d2318f6d3fc4acb25b929136879a9 437 SUPERFAMILY SSF103473 19 434 1.31E-58 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_13310 932d2318f6d3fc4acb25b929136879a9 437 ProSitePatterns PS00217 Sugar transport proteins signature 2. 136 161 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_13310 932d2318f6d3fc4acb25b929136879a9 437 Pfam PF07690 Major Facilitator Superfamily 68 392 4.8E-24 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_04005 fa172cb8229d9b3e71a268cff282bf93 303 Gene3D G3DSA:3.20.20.70 3 299 1.3E-81 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_04005 fa172cb8229d9b3e71a268cff282bf93 303 PIRSF PIRSF001365 2 302 4.3E-80 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_04005 fa172cb8229d9b3e71a268cff282bf93 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 5.7E-13 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_04005 fa172cb8229d9b3e71a268cff282bf93 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 5.7E-13 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_04005 fa172cb8229d9b3e71a268cff282bf93 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 5.7E-13 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_04005 fa172cb8229d9b3e71a268cff282bf93 303 Pfam PF00701 Dihydrodipicolinate synthetase family 7 291 7.5E-56 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_04005 fa172cb8229d9b3e71a268cff282bf93 303 SUPERFAMILY SSF51569 5 291 9.11E-82 T 11-10-2018 APT56_04005 fa172cb8229d9b3e71a268cff282bf93 303 SMART SM01130 5 293 2.1E-84 T 11-10-2018 IPR002220 DapA-like GO:0016829 APT56_14175 c8cf57fc81b5bdee21fa0b4ca3d32d57 189 SUPERFAMILY SSF46689 3 87 1.08E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_14175 c8cf57fc81b5bdee21fa0b4ca3d32d57 189 Gene3D G3DSA:1.10.357.10 6 189 3.0E-57 T 11-10-2018 APT56_14175 c8cf57fc81b5bdee21fa0b4ca3d32d57 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.0E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_14175 c8cf57fc81b5bdee21fa0b4ca3d32d57 189 SUPERFAMILY SSF48498 84 188 7.56E-18 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_16990 10b1459aab77c8771f2a04aae7c90819 291 Pfam PF00800 Prephenate dehydratase 27 203 8.3E-35 T 11-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT56_16990 10b1459aab77c8771f2a04aae7c90819 291 PIRSF PIRSF001500 4 289 7.7E-36 T 11-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APT56_16990 10b1459aab77c8771f2a04aae7c90819 291 Gene3D G3DSA:3.40.190.10 105 192 3.9E-30 T 11-10-2018 APT56_16990 10b1459aab77c8771f2a04aae7c90819 291 Gene3D G3DSA:3.40.190.10 29 200 3.9E-30 T 11-10-2018 APT56_16990 10b1459aab77c8771f2a04aae7c90819 291 Gene3D G3DSA:3.30.70.260 203 290 8.1E-9 T 11-10-2018 APT56_16990 10b1459aab77c8771f2a04aae7c90819 291 SUPERFAMILY SSF53850 26 210 5.54E-31 T 11-10-2018 APT56_22185 cbee1a545d45e48401ef25d66dba59eb 553 Gene3D G3DSA:3.90.226.10 8 553 5.3E-294 T 11-10-2018 APT56_22185 cbee1a545d45e48401ef25d66dba59eb 553 TIGRFAM TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase 8 553 6.0E-297 T 11-10-2018 IPR017633 Benzoyl-CoA-dihydrodiol lyase KEGG: 00362+4.1.2.44|MetaCyc: PWY-1361 APT56_22185 cbee1a545d45e48401ef25d66dba59eb 553 SUPERFAMILY SSF52096 16 264 9.27E-32 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_22185 cbee1a545d45e48401ef25d66dba59eb 553 SUPERFAMILY SSF52096 302 547 2.05E-16 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_22185 cbee1a545d45e48401ef25d66dba59eb 553 Pfam PF00378 Enoyl-CoA hydratase/isomerase 49 238 1.2E-22 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_22185 cbee1a545d45e48401ef25d66dba59eb 553 Gene3D G3DSA:3.90.226.10 259 488 5.3E-294 T 11-10-2018 APT56_27380 6099b2d05e6f272e387af8692f023aa7 230 Gene3D G3DSA:3.40.50.2000 57 222 2.4E-9 T 11-10-2018 APT56_27380 6099b2d05e6f272e387af8692f023aa7 230 SUPERFAMILY SSF53756 30 219 9.42E-9 T 11-10-2018 APT56_18045 ea502dc4d856753953242473074871c0 216 Pfam PF08761 dUTPase 8 169 3.0E-24 T 11-10-2018 IPR014871 dUTPase/dCTP pyrophosphatase KEGG: 00240+3.6.1.12 APT56_18045 ea502dc4d856753953242473074871c0 216 SUPERFAMILY SSF101386 5 214 6.54E-50 T 11-10-2018 APT56_18045 ea502dc4d856753953242473074871c0 216 Gene3D G3DSA:1.10.4010.10 1 216 3.6E-59 T 11-10-2018 APT56_04660 2e0b7e197772277cd83321e21cd0ea76 409 PIRSF PIRSF036542 1 409 1.1E-208 T 11-10-2018 IPR011415 Predicted bifunctional spore maturation protein, fused SpmA/SpmB APT56_04660 2e0b7e197772277cd83321e21cd0ea76 409 Pfam PF07670 Nucleoside recognition 276 379 1.4E-5 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 APT56_04660 2e0b7e197772277cd83321e21cd0ea76 409 Pfam PF07670 Nucleoside recognition 52 158 2.7E-9 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 APT56_19255 ede0b8451dfc4240dcc69547bac23a93 327 SUPERFAMILY SSF161098 96 308 6.15E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19255 ede0b8451dfc4240dcc69547bac23a93 327 Gene3D G3DSA:1.10.3720.10 93 321 3.5E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19255 ede0b8451dfc4240dcc69547bac23a93 327 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 325 1.0E-38 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_17960 dfbac02988f47f5800e2b3e5f15163af 763 Gene3D G3DSA:1.10.10.160 110 182 2.3E-92 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily APT56_17960 dfbac02988f47f5800e2b3e5f15163af 763 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 266 8.0E-74 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 APT56_17960 dfbac02988f47f5800e2b3e5f15163af 763 Gene3D G3DSA:3.40.50.300 6 267 2.3E-92 T 11-10-2018 APT56_17960 dfbac02988f47f5800e2b3e5f15163af 763 Pfam PF13361 UvrD-like helicase C-terminal domain 272 632 8.1E-71 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APT56_17960 dfbac02988f47f5800e2b3e5f15163af 763 SUPERFAMILY SSF52540 3 657 6.36E-177 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_02635 a94f754902a5c803457973bec17a5332 258 Pfam PF01209 ubiE/COQ5 methyltransferase family 30 255 2.4E-82 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APT56_02635 a94f754902a5c803457973bec17a5332 258 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 45 60 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 APT56_02635 a94f754902a5c803457973bec17a5332 258 SUPERFAMILY SSF53335 23 254 1.72E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_02635 a94f754902a5c803457973bec17a5332 258 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 165 179 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 APT56_02635 a94f754902a5c803457973bec17a5332 258 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 25 256 35.699 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APT56_02635 a94f754902a5c803457973bec17a5332 258 Gene3D G3DSA:3.40.50.150 40 257 9.5E-67 T 11-10-2018 APT56_02635 a94f754902a5c803457973bec17a5332 258 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 34 254 2.2E-73 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APT56_08310 bec944d629574255ca8c896073aa082e 278 Pfam PF01614 Bacterial transcriptional regulator 122 242 1.4E-11 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_08310 bec944d629574255ca8c896073aa082e 278 SMART SM00346 1 90 2.7E-6 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_08310 bec944d629574255ca8c896073aa082e 278 SUPERFAMILY SSF46785 2 72 3.04E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_08310 bec944d629574255ca8c896073aa082e 278 Gene3D G3DSA:1.10.10.10 1 71 4.7E-12 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_08310 bec944d629574255ca8c896073aa082e 278 Pfam PF09339 IclR helix-turn-helix domain 5 51 4.8E-7 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_08310 bec944d629574255ca8c896073aa082e 278 Gene3D G3DSA:3.30.450.40 72 239 1.6E-34 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_08310 bec944d629574255ca8c896073aa082e 278 SUPERFAMILY SSF55781 58 245 5.3E-30 T 11-10-2018 APT56_13380 531453733e3766d532a38e82b2479cfd 333 Gene3D G3DSA:1.10.10.60 230 333 2.7E-22 T 11-10-2018 APT56_13380 531453733e3766d532a38e82b2479cfd 333 SUPERFAMILY SSF46689 287 332 4.44E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_13380 531453733e3766d532a38e82b2479cfd 333 SMART SM00342 251 333 1.9E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_13380 531453733e3766d532a38e82b2479cfd 333 Pfam PF12833 Helix-turn-helix domain 257 332 1.4E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_13380 531453733e3766d532a38e82b2479cfd 333 SUPERFAMILY SSF46689 235 285 5.61E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_09025 858eda75f2d5ab15dab6754069a03772 241 Pfam PF01895 PhoU domain 21 106 6.1E-19 T 11-10-2018 IPR026022 PhoU domain APT56_09025 858eda75f2d5ab15dab6754069a03772 241 Pfam PF01895 PhoU domain 124 209 5.4E-18 T 11-10-2018 IPR026022 PhoU domain APT56_09025 858eda75f2d5ab15dab6754069a03772 241 Gene3D G3DSA:1.20.58.220 118 234 1.1E-35 T 11-10-2018 IPR038078 PhoU-like domain superfamily APT56_09025 858eda75f2d5ab15dab6754069a03772 241 Gene3D G3DSA:1.20.58.220 1 117 8.3E-34 T 11-10-2018 IPR038078 PhoU-like domain superfamily APT56_09025 858eda75f2d5ab15dab6754069a03772 241 PIRSF PIRSF003107 2 223 6.7E-65 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 APT56_09025 858eda75f2d5ab15dab6754069a03772 241 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 7 217 1.8E-64 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 APT56_09025 858eda75f2d5ab15dab6754069a03772 241 SUPERFAMILY SSF109755 7 226 3.35E-67 T 11-10-2018 APT56_17105 cc5b7779c32fece7f3af11d081b4eedf 710 Pfam PF07715 TonB-dependent Receptor Plug Domain 68 168 7.7E-20 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_17105 cc5b7779c32fece7f3af11d081b4eedf 710 Gene3D G3DSA:2.40.170.20 178 710 5.7E-136 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_17105 cc5b7779c32fece7f3af11d081b4eedf 710 Pfam PF00593 TonB dependent receptor 252 709 4.1E-60 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_17105 cc5b7779c32fece7f3af11d081b4eedf 710 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 70 710 1.4E-114 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APT56_17105 cc5b7779c32fece7f3af11d081b4eedf 710 SUPERFAMILY SSF56935 25 710 6.35E-138 T 11-10-2018 APT56_17105 cc5b7779c32fece7f3af11d081b4eedf 710 Gene3D G3DSA:2.170.130.10 45 177 8.4E-40 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_19425 66263ec26c4b04aa983b4159505c6e25 122 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 1 117 2.1E-19 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 APT56_04390 fd127466f46ea5a46371275c60d18929 239 Pfam PF13468 Glyoxalase-like domain 10 184 2.8E-31 T 11-10-2018 IPR025870 Glyoxalase-like domain APT56_04390 fd127466f46ea5a46371275c60d18929 239 SUPERFAMILY SSF54593 6 107 8.32E-8 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_05780 9d1fd679d1a39724744d0be9b1da2bdd 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 313 5.8E-46 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_05780 9d1fd679d1a39724744d0be9b1da2bdd 313 Gene3D G3DSA:1.10.3720.10 85 305 9.8E-27 T 11-10-2018 IPR035906 MetI-like superfamily APT56_05780 9d1fd679d1a39724744d0be9b1da2bdd 313 SUPERFAMILY SSF161098 97 298 9.16E-21 T 11-10-2018 IPR035906 MetI-like superfamily APT56_04030 c45cd895c6e05b3a25d453b181af8ddb 214 Pfam PF01810 LysE type translocator 30 202 2.3E-17 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_27110 4e995d8f5ac719fbb1bddbdf70fd0ec1 324 Gene3D G3DSA:3.40.190.10 125 249 1.1E-108 T 11-10-2018 APT56_27110 4e995d8f5ac719fbb1bddbdf70fd0ec1 324 SUPERFAMILY SSF53850 111 288 9.05E-8 T 11-10-2018 APT56_27110 4e995d8f5ac719fbb1bddbdf70fd0ec1 324 Gene3D G3DSA:3.40.190.150 28 314 1.1E-108 T 11-10-2018 APT56_27110 4e995d8f5ac719fbb1bddbdf70fd0ec1 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 320 5.8E-83 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_27110 4e995d8f5ac719fbb1bddbdf70fd0ec1 324 PIRSF PIRSF017082 1 324 6.5E-79 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 PRINTS PR00143 Citrate synthase signature 155 168 2.7E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 PRINTS PR00143 Citrate synthase signature 227 255 2.7E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 PRINTS PR00143 Citrate synthase signature 280 300 2.7E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 PRINTS PR00143 Citrate synthase signature 337 353 2.7E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 PRINTS PR00143 Citrate synthase signature 205 220 2.7E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 PRINTS PR00143 Citrate synthase signature 357 371 2.7E-35 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 PIRSF PIRSF001369 31 405 1.4E-110 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type APT56_07140 6f3f898032515452848e53abadd3f0ba 405 Pfam PF00285 Citrate synthase, C-terminal domain 38 387 3.7E-113 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 ProSitePatterns PS00480 Citrate synthase signature. 287 299 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 SUPERFAMILY SSF48256 38 398 6.41E-123 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 37 404 4.2E-158 T 11-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 Gene3D G3DSA:1.10.580.10 58 384 1.1E-125 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 APT56_07140 6f3f898032515452848e53abadd3f0ba 405 Gene3D G3DSA:1.10.230.10 253 351 1.1E-125 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain APT56_01910 253e2fefd275656354c7ddb6aca0c875 337 Pfam PF04116 Fatty acid hydroxylase superfamily 135 274 1.6E-30 T 11-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 APT56_19795 79fc332520d455fbde6cf3b9c5638dcf 155 Pfam PF01478 Type IV leader peptidase family 2 102 1.8E-12 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 APT56_12220 11f64335b47fa3b4282d1fcc7fad7651 160 Pfam PF02600 Disulfide bond formation protein DsbB 7 152 1.6E-29 T 11-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 APT56_12220 11f64335b47fa3b4282d1fcc7fad7651 160 Gene3D G3DSA:1.20.1550.10 1 158 8.9E-25 T 11-10-2018 IPR023380 DsbB-like superfamily APT56_12220 11f64335b47fa3b4282d1fcc7fad7651 160 SUPERFAMILY SSF158442 10 152 7.19E-26 T 11-10-2018 IPR023380 DsbB-like superfamily APT56_14940 62b62562763bcaede78cb457b7d0d4c2 218 SUPERFAMILY SSF161098 13 201 3.01E-40 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14940 62b62562763bcaede78cb457b7d0d4c2 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 1.5E-30 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APT56_14940 62b62562763bcaede78cb457b7d0d4c2 218 Gene3D G3DSA:1.10.3720.10 1 217 1.4E-50 T 11-10-2018 IPR035906 MetI-like superfamily APT56_14940 62b62562763bcaede78cb457b7d0d4c2 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 216 1.3E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_03020 7843eff4db7e14e5a861daba937181f8 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 32 293 2.1E-37 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_26495 e08a9ee69ca4db6940f34d0d8721c8e7 200 SUPERFAMILY SSF102405 3 176 2.9E-61 T 11-10-2018 APT56_26495 e08a9ee69ca4db6940f34d0d8721c8e7 200 Pfam PF03641 Possible lysine decarboxylase 48 176 1.4E-42 T 11-10-2018 IPR031100 LOG family APT56_26495 e08a9ee69ca4db6940f34d0d8721c8e7 200 Gene3D G3DSA:3.40.50.450 1 197 1.5E-76 T 11-10-2018 APT56_26495 e08a9ee69ca4db6940f34d0d8721c8e7 200 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 4 179 2.0E-59 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG APT56_11905 860a60e2239431c91bb80409f7740cd4 126 SMART SM00448 3 116 2.4E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_11905 860a60e2239431c91bb80409f7740cd4 126 Pfam PF00072 Response regulator receiver domain 5 114 1.2E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_11905 860a60e2239431c91bb80409f7740cd4 126 SUPERFAMILY SSF52172 4 121 7.68E-37 T 11-10-2018 IPR011006 CheY-like superfamily APT56_11905 860a60e2239431c91bb80409f7740cd4 126 Gene3D G3DSA:3.40.50.12740 1 125 1.2E-37 T 11-10-2018 APT56_03745 bda92b2cc5128eb92d2959246aa7b142 218 Pfam PF06578 YOP proteins translocation protein K (YscK) 48 210 2.9E-11 T 11-10-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 APT56_10015 927b99e839c4e5d5b699a66e8e979aac 83 Pfam PF04380 Membrane fusogenic activity 4 75 1.8E-25 T 11-10-2018 IPR007475 Membrane fusogenic activity APT56_27605 26a9721883495d93acd1c4e5d8e4a91b 63 Pfam PF13627 Prokaryotic lipoprotein-attachment site 17 35 3.2E-8 T 11-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site APT56_10625 f4d3cfb38a8585131c76954997c74997 85 Gene3D G3DSA:1.10.1200.10 1 85 2.2E-19 T 11-10-2018 IPR036736 ACP-like superfamily APT56_10625 f4d3cfb38a8585131c76954997c74997 85 Pfam PF00550 Phosphopantetheine attachment site 10 75 8.0E-12 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APT56_10625 f4d3cfb38a8585131c76954997c74997 85 SUPERFAMILY SSF47336 2 82 3.53E-19 T 11-10-2018 IPR036736 ACP-like superfamily APT56_09635 d06c02418207fa9bbb7492824af1ce75 199 Pfam PF07811 TadE-like protein 10 52 2.0E-5 T 11-10-2018 IPR012495 TadE-like APT56_00870 c42bbd7fd0455530767d5fa3eec53d76 208 Pfam PF01810 LysE type translocator 16 205 1.4E-37 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_00870 c42bbd7fd0455530767d5fa3eec53d76 208 PIRSF PIRSF006324 1 208 2.8E-52 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_26715 78a81936c9108635a820703f965f192e 197 Gene3D G3DSA:3.40.50.10490 1 196 4.4E-72 T 11-10-2018 APT56_26715 78a81936c9108635a820703f965f192e 197 SUPERFAMILY SSF53697 2 191 5.26E-55 T 11-10-2018 APT56_26715 78a81936c9108635a820703f965f192e 197 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 3 192 35.997 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 APT56_26715 78a81936c9108635a820703f965f192e 197 Pfam PF13580 SIS domain 11 146 3.1E-33 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_12775 2c6ab6793d3f31a183c3bdf64044fc20 104 TIGRFAM TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein 55 104 1.0E-12 T 11-10-2018 IPR014299 Pentapeptide MXKDX repeat protein APT56_12775 2c6ab6793d3f31a183c3bdf64044fc20 104 TIGRFAM TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein 4 76 1.1E-20 T 11-10-2018 IPR014299 Pentapeptide MXKDX repeat protein APT56_20080 a0c2fb4a459e51ca41aa78e00eeb1355 350 SUPERFAMILY SSF53659 10 336 2.19E-93 T 11-10-2018 APT56_20080 a0c2fb4a459e51ca41aa78e00eeb1355 350 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 12 334 1.5E-96 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 APT56_20080 a0c2fb4a459e51ca41aa78e00eeb1355 350 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 41 328 1.5E-90 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 APT56_20080 a0c2fb4a459e51ca41aa78e00eeb1355 350 Gene3D G3DSA:3.40.718.10 2 335 7.3E-114 T 11-10-2018 APT56_20995 d03d627c1dd92bc07f674b7c22179667 263 SMART SM00062 37 258 1.3E-38 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_20995 d03d627c1dd92bc07f674b7c22179667 263 Gene3D G3DSA:3.40.190.10 34 247 7.2E-48 T 11-10-2018 APT56_20995 d03d627c1dd92bc07f674b7c22179667 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 255 8.3E-38 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_20995 d03d627c1dd92bc07f674b7c22179667 263 Gene3D G3DSA:3.40.190.10 124 216 7.2E-48 T 11-10-2018 APT56_20995 d03d627c1dd92bc07f674b7c22179667 263 SUPERFAMILY SSF53850 7 257 1.65E-48 T 11-10-2018 APT56_22865 25337263244700094d8e270aadc1d3b2 162 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 6 162 32.292 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_22865 25337263244700094d8e270aadc1d3b2 162 SUPERFAMILY SSF55040 15 159 3.66E-55 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_22865 25337263244700094d8e270aadc1d3b2 162 Gene3D G3DSA:3.30.70.640 6 162 2.2E-62 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_22865 25337263244700094d8e270aadc1d3b2 162 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 8 156 4.4E-54 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_22865 25337263244700094d8e270aadc1d3b2 162 Pfam PF01967 MoaC family 19 154 1.6E-47 T 11-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APT56_06365 2585ed1bb7b6a22e980918cd3be9f9f3 255 Gene3D G3DSA:1.20.144.10 157 253 8.6E-21 T 11-10-2018 APT56_06365 2585ed1bb7b6a22e980918cd3be9f9f3 255 Gene3D G3DSA:1.20.144.10 49 156 3.9E-8 T 11-10-2018 APT56_06365 2585ed1bb7b6a22e980918cd3be9f9f3 255 SMART SM00014 126 238 1.1E-15 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT56_06365 2585ed1bb7b6a22e980918cd3be9f9f3 255 SUPERFAMILY SSF48317 52 243 4.84E-31 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily APT56_06365 2585ed1bb7b6a22e980918cd3be9f9f3 255 Pfam PF01569 PAP2 superfamily 130 242 2.9E-20 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APT56_21405 3e746f78cc6a10346e95f6ace1684e4b 124 Pfam PF01361 Tautomerase enzyme 68 114 5.1E-8 T 11-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 APT56_21405 3e746f78cc6a10346e95f6ace1684e4b 124 Pfam PF01361 Tautomerase enzyme 2 55 2.5E-11 T 11-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 APT56_21405 3e746f78cc6a10346e95f6ace1684e4b 124 Gene3D G3DSA:3.30.429.10 62 124 4.2E-13 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_21405 3e746f78cc6a10346e95f6ace1684e4b 124 SUPERFAMILY SSF55331 2 118 1.83E-24 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_21405 3e746f78cc6a10346e95f6ace1684e4b 124 Gene3D G3DSA:3.30.429.10 1 61 1.4E-16 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_23975 24e80dedc8b57208c249098f9fdbf5e3 334 Gene3D G3DSA:3.60.15.10 14 165 2.3E-17 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_23975 24e80dedc8b57208c249098f9fdbf5e3 334 SUPERFAMILY SSF56281 11 327 1.17E-58 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APT56_23975 24e80dedc8b57208c249098f9fdbf5e3 334 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 5 333 1.1E-140 T 11-10-2018 IPR026360 Putative exonuclease, DNA ligase-associated APT56_09525 c332c24f55ff2a771bdaab6f1985fa99 212 PIRSF PIRSF006170 1 212 1.4E-49 T 11-10-2018 IPR026039 Uncharacterised protein family UPF0070 APT56_09525 c332c24f55ff2a771bdaab6f1985fa99 212 SUPERFAMILY SSF48452 97 190 1.66E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_09525 c332c24f55ff2a771bdaab6f1985fa99 212 Gene3D G3DSA:1.25.40.10 98 203 9.2E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_09525 c332c24f55ff2a771bdaab6f1985fa99 212 Pfam PF09976 Tetratricopeptide repeat-like domain 15 210 5.8E-54 T 11-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 APT56_14515 daf698017eea652000a5d4e5d79d35fb 246 Pfam PF09339 IclR helix-turn-helix domain 6 53 3.3E-9 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_14515 daf698017eea652000a5d4e5d79d35fb 246 SUPERFAMILY SSF55781 76 242 1.31E-36 T 11-10-2018 APT56_14515 daf698017eea652000a5d4e5d79d35fb 246 Gene3D G3DSA:1.10.10.10 2 71 6.0E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_14515 daf698017eea652000a5d4e5d79d35fb 246 Gene3D G3DSA:3.30.450.40 74 244 8.8E-38 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_14515 daf698017eea652000a5d4e5d79d35fb 246 SUPERFAMILY SSF46785 3 70 1.34E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_14515 daf698017eea652000a5d4e5d79d35fb 246 Pfam PF01614 Bacterial transcriptional regulator 124 242 2.5E-17 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_22855 7a88c6dc600cfbba2c9c6b4d29d181e4 294 Gene3D G3DSA:3.40.50.1820 49 289 1.6E-60 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_22855 7a88c6dc600cfbba2c9c6b4d29d181e4 294 SUPERFAMILY SSF53474 55 289 2.8E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_22855 7a88c6dc600cfbba2c9c6b4d29d181e4 294 Pfam PF01738 Dienelactone hydrolase family 65 289 1.6E-62 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 APT56_16910 e5c151e6d72a7e12a3333a9be1d42e4f 169 SUPERFAMILY SSF81901 4 125 1.44E-5 T 11-10-2018 APT56_16910 e5c151e6d72a7e12a3333a9be1d42e4f 169 Gene3D G3DSA:1.25.40.10 1 133 5.3E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_24850 569e48eca1a95dd08d42f3a3a28fee4c 245 SMART SM00450 119 220 3.4E-9 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_24850 569e48eca1a95dd08d42f3a3a28fee4c 245 SUPERFAMILY SSF52821 97 235 2.49E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_24850 569e48eca1a95dd08d42f3a3a28fee4c 245 Gene3D G3DSA:3.30.70.100 1 96 6.5E-29 T 11-10-2018 APT56_24850 569e48eca1a95dd08d42f3a3a28fee4c 245 Hamap MF_00469 UPF0176 protein YceA [yceA]. 2 245 33.001 T 11-10-2018 IPR020936 Uncharacterised protein family UPF0176 APT56_24850 569e48eca1a95dd08d42f3a3a28fee4c 245 Pfam PF00581 Rhodanese-like domain 119 214 1.7E-5 T 11-10-2018 IPR001763 Rhodanese-like domain APT56_24850 569e48eca1a95dd08d42f3a3a28fee4c 245 Gene3D G3DSA:3.40.250.10 100 244 7.4E-34 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APT56_08720 06ea4335eabf08182193df8558725c55 314 Pfam PF03547 Membrane transport protein 159 304 4.9E-17 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APT56_08720 06ea4335eabf08182193df8558725c55 314 Pfam PF03547 Membrane transport protein 4 135 5.6E-17 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APT56_03600 57ec2d3e8827f9513c42c186ac5da17d 238 SUPERFAMILY SSF55729 108 221 4.56E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_03600 57ec2d3e8827f9513c42c186ac5da17d 238 Gene3D G3DSA:3.40.630.30 3 229 9.7E-64 T 11-10-2018 APT56_03600 57ec2d3e8827f9513c42c186ac5da17d 238 Pfam PF08445 FR47-like protein 138 220 2.6E-20 T 11-10-2018 IPR013653 FR47-like GO:0016747 APT56_08145 7e544e83efd51ce0d8f44d6890f07cf8 187 Pfam PF09335 SNARE associated Golgi protein 25 146 5.0E-18 T 11-10-2018 IPR032816 SNARE associated Golgi protein APT56_18470 78378e59012fa2f0fb07f29bf4cc4d67 221 Gene3D G3DSA:1.10.357.10 13 180 3.2E-14 T 11-10-2018 APT56_18470 78378e59012fa2f0fb07f29bf4cc4d67 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 71 4.2E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_18470 78378e59012fa2f0fb07f29bf4cc4d67 221 ProSitePatterns PS01081 TetR-type HTH domain signature. 38 68 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APT56_18470 78378e59012fa2f0fb07f29bf4cc4d67 221 SUPERFAMILY SSF46689 19 91 4.29E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_09315 d741fda1b563e5cf8b16e75d4e7f2bde 224 Pfam PF02677 Uncharacterized BCR, COG1636 18 192 1.0E-64 T 11-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 APT56_09315 d741fda1b563e5cf8b16e75d4e7f2bde 224 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 18 194 33.099 T 11-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 APT56_15945 9b664f7f09173895f50688fe1138c138 117 SUPERFAMILY SSF54909 1 114 1.53E-33 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_15945 9b664f7f09173895f50688fe1138c138 117 Gene3D G3DSA:3.30.70.1060 1 114 4.4E-35 T 11-10-2018 APT56_15945 9b664f7f09173895f50688fe1138c138 117 Pfam PF03795 YCII-related domain 1 112 8.9E-20 T 11-10-2018 IPR005545 YCII-related APT56_07420 764ad02c287afcb354a2232f7ffbdb28 379 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 13 375 3.2E-152 T 11-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition APT56_07420 764ad02c287afcb354a2232f7ffbdb28 379 Gene3D G3DSA:3.40.630.30 175 328 2.2E-9 T 11-10-2018 APT56_07420 764ad02c287afcb354a2232f7ffbdb28 379 SUPERFAMILY SSF55729 177 348 2.86E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_24950 1e08643304c8fef82fbdc4116b838f5f 478 PIRSF PIRSF006446 1 461 4.0E-214 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APT56_24950 1e08643304c8fef82fbdc4116b838f5f 478 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 436 6.8E-165 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APT56_24060 149df80cf9373028443d62fa808a71b6 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 255 269 9.2E-18 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT56_24060 149df80cf9373028443d62fa808a71b6 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 117 146 9.2E-18 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT56_24060 149df80cf9373028443d62fa808a71b6 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 34 54 9.2E-18 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT56_24060 149df80cf9373028443d62fa808a71b6 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 79 99 9.2E-18 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT56_24060 149df80cf9373028443d62fa808a71b6 310 PRINTS PR00075 Fatty acid desaturase family 1 signature 212 233 9.2E-18 T 11-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 APT56_24060 149df80cf9373028443d62fa808a71b6 310 Pfam PF00487 Fatty acid desaturase 59 287 1.6E-24 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 APT56_13525 0e46405cd73159778172abfe00bfdaa3 325 Gene3D G3DSA:3.40.190.10 129 250 1.9E-95 T 11-10-2018 APT56_13525 0e46405cd73159778172abfe00bfdaa3 325 PIRSF PIRSF017082 1 325 6.3E-72 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13525 0e46405cd73159778172abfe00bfdaa3 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 320 1.2E-67 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_13525 0e46405cd73159778172abfe00bfdaa3 325 SUPERFAMILY SSF53850 32 241 8.68E-9 T 11-10-2018 APT56_13525 0e46405cd73159778172abfe00bfdaa3 325 Gene3D G3DSA:3.40.190.150 31 315 1.9E-95 T 11-10-2018 APT56_07075 cadd41461297ceaa1afb134bf8b48f33 143 Pfam PF04977 Septum formation initiator 11 88 3.7E-25 T 11-10-2018 IPR007060 Septum formation initiator FtsL/DivIC APT56_07075 cadd41461297ceaa1afb134bf8b48f33 143 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 35.68 T 11-10-2018 IPR023081 Cell division protein FtsB APT56_19090 ba49c75135f726204b156542c1e3f763 461 Gene3D G3DSA:3.40.190.10 108 444 9.7E-116 T 11-10-2018 APT56_19090 ba49c75135f726204b156542c1e3f763 461 Gene3D G3DSA:3.40.190.10 195 449 9.7E-116 T 11-10-2018 APT56_19090 ba49c75135f726204b156542c1e3f763 461 SUPERFAMILY SSF53850 104 336 4.75E-41 T 11-10-2018 APT56_19090 ba49c75135f726204b156542c1e3f763 461 Pfam PF13379 NMT1-like family 103 341 8.4E-79 T 11-10-2018 APT56_12370 5be4f7d84f9f37e559745ec58cb83032 146 Pfam PF01957 NfeD-like C-terminal, partner-binding 3 138 3.8E-7 T 11-10-2018 IPR002810 NfeD-like, C-terminal domain APT56_14145 7b426c983db8fd42a9eb41e66b687e9a 264 Gene3D G3DSA:3.40.30.10 38 222 2.7E-5 T 11-10-2018 APT56_14145 7b426c983db8fd42a9eb41e66b687e9a 264 SUPERFAMILY SSF52833 40 149 6.4E-11 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_14145 7b426c983db8fd42a9eb41e66b687e9a 264 Pfam PF05988 Bacterial protein of unknown function (DUF899) 1 253 7.0E-91 T 11-10-2018 IPR010296 Protein of unknown function DUF899, thioredoxin-like APT56_15310 35bd65ac822aaf7c43ca2ae1c6c57e38 875 SUPERFAMILY SSF52540 1 859 3.6E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_15310 35bd65ac822aaf7c43ca2ae1c6c57e38 875 Gene3D G3DSA:3.40.50.300 1 264 5.2E-21 T 11-10-2018 APT56_15310 35bd65ac822aaf7c43ca2ae1c6c57e38 875 Gene3D G3DSA:3.40.50.300 505 868 3.4E-11 T 11-10-2018 APT56_15310 35bd65ac822aaf7c43ca2ae1c6c57e38 875 Pfam PF13476 AAA domain 5 309 7.7E-8 T 11-10-2018 IPR038729 Rad50/SbcC-type AAA domain APT56_19190 8f7c9c8d86175049c896c740be84d951 332 Pfam PF16220 Domain of unknown function (DUF4880) 20 60 3.8E-11 T 11-10-2018 IPR032623 FecR, N-terminal APT56_19190 8f7c9c8d86175049c896c740be84d951 332 PIRSF PIRSF018266 10 332 3.2E-59 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_19190 8f7c9c8d86175049c896c740be84d951 332 Pfam PF04773 FecR protein 120 221 1.9E-9 T 11-10-2018 IPR006860 FecR protein APT56_12720 f051805723d8f50b12ae887787cd7859 65 Pfam PF04328 Selenoprotein, putative 7 65 8.5E-30 T 11-10-2018 IPR007423 Selenoprotein, putative APT56_27295 b4d73d9635c4a2870676a3e7b5a05026 199 SUPERFAMILY SSF159594 28 191 1.86E-25 T 11-10-2018 APT56_27295 b4d73d9635c4a2870676a3e7b5a05026 199 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 54 184 1.9E-11 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component APT56_27295 b4d73d9635c4a2870676a3e7b5a05026 199 Gene3D G3DSA:3.40.50.10610 21 197 6.3E-22 T 11-10-2018 APT56_22220 c7fbb490a81e8cb381f47a9712f8e687 349 Pfam PF02653 Branched-chain amino acid transport system / permease component 28 286 2.8E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_05475 10cee9400308b1d51f96851a4fe7ec78 134 Pfam PF07681 DoxX 11 87 7.5E-18 T 11-10-2018 IPR032808 DoxX family APT56_17945 aadd2185c3aa31c992ce9ecf56dcd14e 879 Gene3D G3DSA:2.40.170.20 290 879 7.8E-21 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APT56_17945 aadd2185c3aa31c992ce9ecf56dcd14e 879 SMART SM00965 58 109 5.3E-11 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 APT56_17945 aadd2185c3aa31c992ce9ecf56dcd14e 879 SUPERFAMILY SSF56935 118 879 1.83E-41 T 11-10-2018 APT56_17945 aadd2185c3aa31c992ce9ecf56dcd14e 879 Gene3D G3DSA:3.55.50.30 29 130 9.9E-22 T 11-10-2018 APT56_17945 aadd2185c3aa31c992ce9ecf56dcd14e 879 Pfam PF07715 TonB-dependent Receptor Plug Domain 136 250 5.7E-6 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_17535 bacffcbffd3765b14905b7f0f2aea9ae 271 Gene3D G3DSA:3.20.20.140 1 261 2.6E-68 T 11-10-2018 APT56_17535 bacffcbffd3765b14905b7f0f2aea9ae 271 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APT56_17535 bacffcbffd3765b14905b7f0f2aea9ae 271 Pfam PF01026 TatD related DNase 3 260 6.2E-60 T 11-10-2018 IPR001130 TatD family GO:0016788 APT56_17535 bacffcbffd3765b14905b7f0f2aea9ae 271 PIRSF PIRSF005902 1 263 4.3E-58 T 11-10-2018 IPR001130 TatD family GO:0016788 APT56_17535 bacffcbffd3765b14905b7f0f2aea9ae 271 SUPERFAMILY SSF51556 2 260 1.52E-69 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_20360 4f44f3e04fbf01f6ff85fd92311ee691 60 Pfam PF13318 Protein of unknown function (DUF4089) 9 58 7.6E-10 T 11-10-2018 IPR025148 Protein of unknown function DUF4089 APT56_24595 1ea9d159124896f2426f4014bb1172dd 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 1.1E-118 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_24595 1ea9d159124896f2426f4014bb1172dd 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 416 4.8E-100 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_24595 1ea9d159124896f2426f4014bb1172dd 427 PIRSF PIRSF006066 1 427 7.1E-138 T 11-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 APT56_03630 da84b58e0162b1d3fbf14659b6fc7843 492 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 88 213 2.3E-9 T 11-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APT56_03630 da84b58e0162b1d3fbf14659b6fc7843 492 Gene3D G3DSA:3.30.590.20 2 256 1.7E-18 T 11-10-2018 APT56_03630 da84b58e0162b1d3fbf14659b6fc7843 492 Gene3D G3DSA:3.30.590.20 374 482 4.2E-7 T 11-10-2018 APT56_03630 da84b58e0162b1d3fbf14659b6fc7843 492 SUPERFAMILY SSF55931 6 472 6.28E-16 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APT56_05920 8856a182d06636357f726985f79f51a5 207 Pfam PF13470 PIN domain 14 112 1.6E-16 T 11-10-2018 IPR002716 PIN domain APT56_23560 d8210501e829c490618b86c28e0d30d6 157 Gene3D G3DSA:3.10.450.160 53 157 8.9E-38 T 11-10-2018 APT56_23560 d8210501e829c490618b86c28e0d30d6 157 Pfam PF11776 Nickel/cobalt transporter regulator 122 150 9.8E-6 T 11-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB APT56_17550 2e7b56858e1e6a8e18af2da8193c1b3f 312 PIRSF PIRSF015283 225 308 8.8E-7 T 11-10-2018 IPR016631 Regulatory, RpfE APT56_17550 2e7b56858e1e6a8e18af2da8193c1b3f 312 PIRSF PIRSF015283 1 234 2.4E-72 T 11-10-2018 IPR016631 Regulatory, RpfE APT56_17550 2e7b56858e1e6a8e18af2da8193c1b3f 312 Gene3D G3DSA:3.30.70.2130 92 219 2.6E-5 T 11-10-2018 APT56_18820 0b2e524c93d7dd638cf521d370c03ebe 610 SUPERFAMILY SSF90123 42 373 1.57E-14 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APT56_18820 0b2e524c93d7dd638cf521d370c03ebe 610 Pfam PF00005 ABC transporter 409 544 2.0E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_18820 0b2e524c93d7dd638cf521d370c03ebe 610 SUPERFAMILY SSF52540 392 588 1.33E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_18820 0b2e524c93d7dd638cf521d370c03ebe 610 SMART SM00382 418 589 4.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_18820 0b2e524c93d7dd638cf521d370c03ebe 610 Gene3D G3DSA:3.40.50.300 387 599 6.8E-37 T 11-10-2018 APT56_18820 0b2e524c93d7dd638cf521d370c03ebe 610 Pfam PF06472 ABC transporter transmembrane region 2 38 325 4.7E-76 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APT56_03015 a676a7fe224fc7f2c2b0aa2e5f2e80f2 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 294 2.1E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_11240 d74aaaf4512950793b9f488e8174faf8 344 Gene3D G3DSA:3.50.30.50 57 344 6.8E-10 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_11240 d74aaaf4512950793b9f488e8174faf8 344 SUPERFAMILY SSF102198 95 343 1.96E-13 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_11240 d74aaaf4512950793b9f488e8174faf8 344 Pfam PF04199 Putative cyclase 85 272 7.4E-15 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_19210 345ec6040af4ed671ef8abfc91575c22 121 Gene3D G3DSA:2.60.120.10 17 120 5.7E-30 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_19210 345ec6040af4ed671ef8abfc91575c22 121 Pfam PF05899 Protein of unknown function (DUF861) 42 115 7.9E-16 T 11-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 APT56_19210 345ec6040af4ed671ef8abfc91575c22 121 SUPERFAMILY SSF51182 19 118 2.31E-16 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_22085 b3b2054449b6392cbecba08aa8345f49 316 SUPERFAMILY SSF51569 4 303 1.25E-56 T 11-10-2018 APT56_22085 b3b2054449b6392cbecba08aa8345f49 316 Gene3D G3DSA:3.20.20.70 2 305 8.0E-96 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_22085 b3b2054449b6392cbecba08aa8345f49 316 Pfam PF00682 HMGL-like 6 284 8.2E-34 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 APT56_03090 e493c872469eeb7f73c3045474c5782f 134 SUPERFAMILY SSF55298 2 133 1.88E-32 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_03090 e493c872469eeb7f73c3045474c5782f 134 Pfam PF01042 Endoribonuclease L-PSP 26 132 7.8E-22 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APT56_03090 e493c872469eeb7f73c3045474c5782f 134 Gene3D G3DSA:3.30.1330.40 8 133 1.4E-31 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APT56_20735 e2cc4dc10420337162e94455fcbf8a77 435 Pfam PF02321 Outer membrane efflux protein 41 218 6.2E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_20735 e2cc4dc10420337162e94455fcbf8a77 435 Pfam PF02321 Outer membrane efflux protein 250 429 4.5E-7 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_20735 e2cc4dc10420337162e94455fcbf8a77 435 SUPERFAMILY SSF56954 6 430 6.28E-48 T 11-10-2018 APT56_20735 e2cc4dc10420337162e94455fcbf8a77 435 Gene3D G3DSA:1.20.1600.10 24 433 1.9E-46 T 11-10-2018 APT56_21980 f7832e0c46b50bfe0339bd36c206179e 121 Gene3D G3DSA:3.40.50.2300 2 121 3.8E-27 T 11-10-2018 APT56_21980 f7832e0c46b50bfe0339bd36c206179e 121 SUPERFAMILY SSF52172 7 120 9.53E-28 T 11-10-2018 IPR011006 CheY-like superfamily APT56_21980 f7832e0c46b50bfe0339bd36c206179e 121 Pfam PF00072 Response regulator receiver domain 9 117 8.5E-18 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_21980 f7832e0c46b50bfe0339bd36c206179e 121 SMART SM00448 7 117 4.4E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_17205 b8a6bda1a52dc39bff433c77cee15bec 252 Pfam PF07277 SapC 19 235 4.6E-71 T 11-10-2018 IPR010836 SapC APT56_18050 82ea996a47eb622422ee6a8e7a8f43b6 370 Gene3D G3DSA:3.20.20.70 1 354 4.3E-121 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_18050 82ea996a47eb622422ee6a8e7a8f43b6 370 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 338 2.3E-67 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 APT56_18050 82ea996a47eb622422ee6a8e7a8f43b6 370 SUPERFAMILY SSF51395 1 352 4.28E-115 T 11-10-2018 APT56_03645 4357e5523782c456c6b107f9ecd4ba64 139 Gene3D G3DSA:3.30.1460.10 1 116 9.0E-18 T 11-10-2018 APT56_03645 4357e5523782c456c6b107f9ecd4ba64 139 SUPERFAMILY SSF69635 2 128 1.53E-16 T 11-10-2018 APT56_03645 4357e5523782c456c6b107f9ecd4ba64 139 Pfam PF05932 Tir chaperone protein (CesT) family 2 114 1.9E-14 T 11-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 APT56_18890 7b0fadddb59b0ceaca5d8edf683b8c1e 439 SUPERFAMILY SSF56601 84 437 2.91E-93 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_18890 7b0fadddb59b0ceaca5d8edf683b8c1e 439 Pfam PF00144 Beta-lactamase 89 436 1.3E-72 T 11-10-2018 IPR001466 Beta-lactamase-related APT56_18890 7b0fadddb59b0ceaca5d8edf683b8c1e 439 ProSitePatterns PS00336 Beta-lactamase class-C active site. 137 144 - T 11-10-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 APT56_18890 7b0fadddb59b0ceaca5d8edf683b8c1e 439 Gene3D G3DSA:3.40.710.10 74 439 1.9E-129 T 11-10-2018 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 Gene3D G3DSA:4.10.640.10 5 90 4.5E-25 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 SUPERFAMILY SSF46911 14 89 1.57E-27 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 36 85 7.0E-22 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 Pfam PF01084 Ribosomal protein S18 34 83 2.2E-22 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 PRINTS PR00974 Ribosomal protein S18 family signature 53 60 6.3E-15 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 PRINTS PR00974 Ribosomal protein S18 family signature 61 75 6.3E-15 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 PRINTS PR00974 Ribosomal protein S18 family signature 43 53 6.3E-15 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 PRINTS PR00974 Ribosomal protein S18 family signature 75 85 6.3E-15 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 TIGRFAM TIGR00165 S18: ribosomal protein bS18 20 87 6.2E-33 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 ProSitePatterns PS00057 Ribosomal protein S18 signature. 36 59 - T 11-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_08090 00a1d4e325050f9a9ee2e93040ab8e38 90 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 7 88 20.184 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APT56_16785 1ff97670ea689be021591f0332f6b3d0 462 Gene3D G3DSA:3.40.50.1100 107 229 8.1E-165 T 11-10-2018 APT56_16785 1ff97670ea689be021591f0332f6b3d0 462 Gene3D G3DSA:3.40.50.1100 34 436 8.1E-165 T 11-10-2018 APT56_16785 1ff97670ea689be021591f0332f6b3d0 462 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 455 195.445 T 11-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 APT56_16785 1ff97670ea689be021591f0332f6b3d0 462 SUPERFAMILY SSF53686 66 398 2.1E-46 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APT56_16785 1ff97670ea689be021591f0332f6b3d0 462 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 14 436 3.6E-153 T 11-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 APT56_16785 1ff97670ea689be021591f0332f6b3d0 462 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 69 391 1.2E-50 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APT56_07620 58750e109895cee40ae04996bde34438 349 Gene3D G3DSA:3.50.30.50 163 348 1.8E-9 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_07620 58750e109895cee40ae04996bde34438 349 Pfam PF04199 Putative cyclase 88 277 3.9E-13 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_07620 58750e109895cee40ae04996bde34438 349 SUPERFAMILY SSF102198 97 348 7.85E-11 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_18505 ab22ba22ef7173c8a2be15b8cf0580d5 383 SUPERFAMILY SSF53474 81 216 7.59E-8 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_18505 ab22ba22ef7173c8a2be15b8cf0580d5 383 Gene3D G3DSA:3.40.50.1820 52 370 1.9E-60 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_12415 36c4776958cae4baf9c925116a182ad7 145 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 23 127 1.2E-15 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 APT56_12415 36c4776958cae4baf9c925116a182ad7 145 Gene3D G3DSA:3.10.129.10 7 142 3.6E-33 T 11-10-2018 APT56_12415 36c4776958cae4baf9c925116a182ad7 145 SUPERFAMILY SSF54637 13 138 2.27E-27 T 11-10-2018 IPR029069 HotDog domain superfamily APT56_12415 36c4776958cae4baf9c925116a182ad7 145 Pfam PF03061 Thioesterase superfamily 53 128 1.2E-13 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APT56_19335 1139092262987a6971b35d173d57aa38 340 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 40 311 1.5E-70 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_19335 1139092262987a6971b35d173d57aa38 340 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 40 293 1.5E-71 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_19335 1139092262987a6971b35d173d57aa38 340 Gene3D G3DSA:3.40.190.170 32 340 2.6E-106 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_19335 1139092262987a6971b35d173d57aa38 340 PIRSF PIRSF006470 7 337 1.9E-70 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 APT56_12460 6bf15e70168e9378f56ef7e68203caea 247 SMART SM00062 28 245 8.8E-71 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_12460 6bf15e70168e9378f56ef7e68203caea 247 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_12460 6bf15e70168e9378f56ef7e68203caea 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 243 7.6E-64 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_12460 6bf15e70168e9378f56ef7e68203caea 247 SUPERFAMILY SSF53850 9 243 1.02E-71 T 11-10-2018 APT56_12460 6bf15e70168e9378f56ef7e68203caea 247 Gene3D G3DSA:3.40.190.10 33 242 3.4E-70 T 11-10-2018 APT56_12460 6bf15e70168e9378f56ef7e68203caea 247 SMART SM00079 28 244 1.2E-6 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 APT56_12460 6bf15e70168e9378f56ef7e68203caea 247 Gene3D G3DSA:3.40.190.10 112 204 3.4E-70 T 11-10-2018 APT56_01425 295c594963dcece91cc10dd59e807e1b 204 SUPERFAMILY SSF52833 60 198 1.12E-12 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_01425 295c594963dcece91cc10dd59e807e1b 204 Gene3D G3DSA:3.40.30.10 52 198 2.7E-7 T 11-10-2018 APT56_25615 4620e0f2e32ec4d2be9a26e079391231 489 Gene3D G3DSA:2.60.120.1600 365 489 1.3E-38 T 11-10-2018 APT56_25615 4620e0f2e32ec4d2be9a26e079391231 489 Pfam PF06863 Protein of unknown function (DUF1254) 99 226 7.7E-32 T 11-10-2018 IPR010679 Domain of unknown function DUF1254 APT56_25615 4620e0f2e32ec4d2be9a26e079391231 489 Pfam PF06742 Protein of unknown function (DUF1214) 362 471 7.7E-32 T 11-10-2018 IPR010621 Domain of unknown function DUF1214 APT56_25615 4620e0f2e32ec4d2be9a26e079391231 489 SUPERFAMILY SSF160935 56 487 4.32E-105 T 11-10-2018 APT56_06075 8cda2a02f20481f92df6099246b3af0f 71 Gene3D G3DSA:2.60.120.10 1 63 3.2E-7 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_26275 384f54e29f4a77cc96741074e343b7f1 269 Pfam PF00795 Carbon-nitrogen hydrolase 2 253 9.3E-57 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APT56_26275 384f54e29f4a77cc96741074e343b7f1 269 SUPERFAMILY SSF56317 1 263 5.49E-78 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_26275 384f54e29f4a77cc96741074e343b7f1 269 Gene3D G3DSA:3.60.110.10 1 268 7.4E-91 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APT56_09375 1a1bfc05769aeffb53055720e27775ea 313 SUPERFAMILY SSF53697 109 241 8.9E-16 T 11-10-2018 APT56_09375 1a1bfc05769aeffb53055720e27775ea 313 Gene3D G3DSA:3.40.50.10490 105 296 1.3E-26 T 11-10-2018 APT56_09375 1a1bfc05769aeffb53055720e27775ea 313 SUPERFAMILY SSF46689 3 77 2.15E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_09375 1a1bfc05769aeffb53055720e27775ea 313 Pfam PF01380 SIS domain 134 240 1.8E-11 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APT56_09375 1a1bfc05769aeffb53055720e27775ea 313 Gene3D G3DSA:1.10.10.10 3 81 4.4E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18695 ac612b90d16eca915990bad6b2a6b444 170 Gene3D G3DSA:1.10.10.10 8 166 2.9E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18695 ac612b90d16eca915990bad6b2a6b444 170 SUPERFAMILY SSF46785 24 158 9.78E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18695 ac612b90d16eca915990bad6b2a6b444 170 Pfam PF13463 Winged helix DNA-binding domain 52 117 1.2E-18 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_18695 ac612b90d16eca915990bad6b2a6b444 170 PIRSF PIRSF036158 1 170 2.7E-70 T 11-10-2018 IPR014601 Transcriptional regulator with MarR-type HTH domain APT56_04150 fdadc032c8cd734c1faa03b832fb2e85 507 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 22 441 4.7E-133 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane APT56_09815 bf8d17559d8dac17987259fa65419989 217 SUPERFAMILY SSF51366 3 211 5.18E-56 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APT56_09815 bf8d17559d8dac17987259fa65419989 217 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 208 3.4E-41 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 APT56_09815 bf8d17559d8dac17987259fa65419989 217 Gene3D G3DSA:3.20.20.70 1 217 5.9E-65 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_09815 bf8d17559d8dac17987259fa65419989 217 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 213 39.021 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 APT56_11065 3247d7d791204aea5a637da3ca8d8f8f 255 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APT56_11065 3247d7d791204aea5a637da3ca8d8f8f 255 Pfam PF13247 4Fe-4S dicluster domain 103 198 5.2E-29 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APT56_11065 3247d7d791204aea5a637da3ca8d8f8f 255 SUPERFAMILY SSF54862 53 233 6.7E-66 T 11-10-2018 APT56_11065 3247d7d791204aea5a637da3ca8d8f8f 255 Gene3D G3DSA:3.30.70.20 48 250 3.2E-66 T 11-10-2018 APT56_20915 14162c0847435f7a089b7db0dd4af0fd 699 Pfam PF04632 Fusaric acid resistance protein family 34 684 4.2E-135 T 11-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 APT56_20925 cf51ece13f60ff5c6c8fabc241e5924e 306 Pfam PF13437 HlyD family secretion protein 155 236 1.9E-8 T 11-10-2018 APT56_20925 cf51ece13f60ff5c6c8fabc241e5924e 306 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 214 1.2E-28 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APT56_20925 cf51ece13f60ff5c6c8fabc241e5924e 306 Pfam PF13533 Biotin-lipoyl like 47 95 5.1E-18 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APT56_20925 cf51ece13f60ff5c6c8fabc241e5924e 306 SUPERFAMILY SSF111369 42 205 3.92E-20 T 11-10-2018 APT56_20925 cf51ece13f60ff5c6c8fabc241e5924e 306 Gene3D G3DSA:2.40.50.100 46 111 1.6E-12 T 11-10-2018 APT56_20925 cf51ece13f60ff5c6c8fabc241e5924e 306 Gene3D G3DSA:2.40.30.170 170 292 4.6E-25 T 11-10-2018 APT56_22705 651ec1e42637a291017ad7def8d5a911 384 Gene3D G3DSA:3.40.50.2300 28 366 5.8E-110 T 11-10-2018 APT56_22705 651ec1e42637a291017ad7def8d5a911 384 Pfam PF13458 Periplasmic binding protein 25 379 1.8E-50 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_22705 651ec1e42637a291017ad7def8d5a911 384 SUPERFAMILY SSF53822 26 382 2.16E-71 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_22705 651ec1e42637a291017ad7def8d5a911 384 Gene3D G3DSA:3.40.50.2300 143 375 5.8E-110 T 11-10-2018 APT56_15415 176befc3670272a66bee2cff15aebd46 576 Gene3D G3DSA:3.40.190.10 186 507 1.8E-46 T 11-10-2018 APT56_15415 176befc3670272a66bee2cff15aebd46 576 Pfam PF01547 Bacterial extracellular solute-binding protein 82 424 2.7E-11 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APT56_15415 176befc3670272a66bee2cff15aebd46 576 Gene3D G3DSA:3.40.190.10 84 464 1.8E-46 T 11-10-2018 APT56_15415 176befc3670272a66bee2cff15aebd46 576 SUPERFAMILY SSF53850 66 516 4.92E-62 T 11-10-2018 APT56_15415 176befc3670272a66bee2cff15aebd46 576 PIRSF PIRSF035859 1 575 0.0 T 11-10-2018 IPR014597 ABC transporter, periplasmic substrate-binding protein, predicted GO:0005215 APT56_16400 ccd9c068e9b5c1f9604fa494a89c123c 357 SUPERFAMILY SSF144052 20 337 7.06E-16 T 11-10-2018 APT56_20920 1188f233a0f054f5137df8b623e37c78 64 Pfam PF07869 Protein of unknown function (DUF1656) 4 59 4.0E-19 T 11-10-2018 IPR012451 Protein of unknown function DUF1656 APT56_11680 cdcc59fe4fbd1dfb4031b6f6dc3525a0 162 Pfam PF12019 Type II transport protein GspH 47 152 5.7E-7 T 11-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 APT56_11680 cdcc59fe4fbd1dfb4031b6f6dc3525a0 162 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 10 159 3.0E-27 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 APT56_11680 cdcc59fe4fbd1dfb4031b6f6dc3525a0 162 PRINTS PR00885 Bacterial general secretion pathway protein H signature 8 22 5.2E-7 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 APT56_11680 cdcc59fe4fbd1dfb4031b6f6dc3525a0 162 PRINTS PR00885 Bacterial general secretion pathway protein H signature 23 37 5.2E-7 T 11-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 APT56_11680 cdcc59fe4fbd1dfb4031b6f6dc3525a0 162 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 5.8E-9 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11680 cdcc59fe4fbd1dfb4031b6f6dc3525a0 162 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 32 1.5E-8 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11680 cdcc59fe4fbd1dfb4031b6f6dc3525a0 162 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APT56_11680 cdcc59fe4fbd1dfb4031b6f6dc3525a0 162 SUPERFAMILY SSF54523 13 96 2.98E-8 T 11-10-2018 APT56_04115 a49db9c0ab291dc425e7b3e261ea3d9d 226 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 7 226 39.722 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 APT56_04115 a49db9c0ab291dc425e7b3e261ea3d9d 226 TIGRFAM TIGR02796 tolQ: protein TolQ 8 223 5.5E-84 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 APT56_04115 a49db9c0ab291dc425e7b3e261ea3d9d 226 Pfam PF01618 MotA/TolQ/ExbB proton channel family 80 211 4.9E-42 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APT56_27785 53076252f620d3a275cff27e7e52b521 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 322 9.8E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_26835 f5bcf6c620bfd0781184c4c6f2da2916 121 Gene3D G3DSA:3.30.70.100 16 107 3.5E-16 T 11-10-2018 APT56_26835 f5bcf6c620bfd0781184c4c6f2da2916 121 Pfam PF03992 Antibiotic biosynthesis monooxygenase 26 91 7.8E-6 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain APT56_26835 f5bcf6c620bfd0781184c4c6f2da2916 121 SUPERFAMILY SSF54909 13 113 2.23E-22 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_08110 f260fd08a65553c38e23cb7258b56750 325 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 317 2.5E-96 T 11-10-2018 IPR016833 Putative sodium bile acid cotransporter APT56_08110 f260fd08a65553c38e23cb7258b56750 325 Gene3D G3DSA:1.20.1530.20 6 325 3.9E-34 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APT56_08110 f260fd08a65553c38e23cb7258b56750 325 PIRSF PIRSF026166 1 325 2.6E-133 T 11-10-2018 IPR016833 Putative sodium bile acid cotransporter APT56_19815 12acf80c1dde16e69979a551f32da37c 547 Pfam PF15984 Bacterial collagen, middle region 201 350 2.3E-8 T 11-10-2018 IPR031929 Bacterial collagen-like protein, middle domain APT56_19815 12acf80c1dde16e69979a551f32da37c 547 Pfam PF15984 Bacterial collagen, middle region 73 190 1.6E-14 T 11-10-2018 IPR031929 Bacterial collagen-like protein, middle domain APT56_15430 ebb0cb8ee896b67a56ac034af7a1f80e 296 SUPERFAMILY SSF161098 50 275 9.94E-46 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15430 ebb0cb8ee896b67a56ac034af7a1f80e 296 Gene3D G3DSA:1.10.3720.10 45 286 7.9E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_15430 ebb0cb8ee896b67a56ac034af7a1f80e 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 280 7.8E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_18995 acadd7038458d1152848b0fa04be4bfe 203 Pfam PF01810 LysE type translocator 14 188 1.1E-8 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_10695 91e6f22e03fdee4e8d0e841c7d6f5fa6 444 SUPERFAMILY SSF103473 12 438 1.22E-52 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_10695 91e6f22e03fdee4e8d0e841c7d6f5fa6 444 Gene3D G3DSA:1.20.1250.20 17 215 2.2E-28 T 11-10-2018 APT56_10695 91e6f22e03fdee4e8d0e841c7d6f5fa6 444 Gene3D G3DSA:1.20.1250.20 248 441 1.6E-19 T 11-10-2018 APT56_10695 91e6f22e03fdee4e8d0e841c7d6f5fa6 444 Pfam PF07690 Major Facilitator Superfamily 34 408 2.6E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_00375 e0ccf66d4465cf116ea456eda11eb88b 298 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 15 223 4.7E-27 T 11-10-2018 IPR008775 Phytanoyl-CoA dioxygenase APT56_00375 e0ccf66d4465cf116ea456eda11eb88b 298 SUPERFAMILY SSF51197 4 234 1.74E-46 T 11-10-2018 APT56_00375 e0ccf66d4465cf116ea456eda11eb88b 298 Gene3D G3DSA:2.60.120.620 1 246 3.0E-62 T 11-10-2018 APT56_11180 25fd54ecc91f57951061448a0b5d6fec 252 Pfam PF02311 AraC-like ligand binding domain 12 137 6.8E-7 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 APT56_11180 25fd54ecc91f57951061448a0b5d6fec 252 Gene3D G3DSA:2.60.120.10 3 85 9.2E-8 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_11180 25fd54ecc91f57951061448a0b5d6fec 252 SUPERFAMILY SSF46689 201 248 1.12E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_11180 25fd54ecc91f57951061448a0b5d6fec 252 Gene3D G3DSA:1.10.10.60 147 250 4.1E-19 T 11-10-2018 APT56_11180 25fd54ecc91f57951061448a0b5d6fec 252 SMART SM00342 164 246 7.2E-19 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_11180 25fd54ecc91f57951061448a0b5d6fec 252 Pfam PF12833 Helix-turn-helix domain 172 247 1.5E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_11180 25fd54ecc91f57951061448a0b5d6fec 252 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 201 242 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APT56_11180 25fd54ecc91f57951061448a0b5d6fec 252 SUPERFAMILY SSF51182 9 170 2.36E-13 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_18975 47dfa4795c439768c4ae144e23bf3cfa 217 Pfam PF03006 Haemolysin-III related 10 206 3.1E-41 T 11-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 APT56_18975 47dfa4795c439768c4ae144e23bf3cfa 217 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 12 212 1.5E-61 T 11-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 APT56_24915 1c7d23b19b9e47c14fb02998ff80aed0 502 SUPERFAMILY SSF53474 142 433 2.37E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_24915 1c7d23b19b9e47c14fb02998ff80aed0 502 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 18 184 4.2E-44 T 11-10-2018 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 APT56_17475 6c15fc7f7fa11c87dd5cf3a2e1fa1c73 107 ProDom PD052090 YDCA PRECURSOR SIGNAL ECS2024 17 55 2.0E-8 T 11-10-2018 APT56_17475 6c15fc7f7fa11c87dd5cf3a2e1fa1c73 107 Pfam PF08789 PBCV-specific basic adaptor domain 87 107 3.0E-4 T 11-10-2018 IPR014897 PBCV-specific basic adaptor domain APT56_07705 aaa6359956f3c57a7567418427cfa536 450 SUPERFAMILY SSF102114 84 319 1.15E-12 T 11-10-2018 APT56_07705 aaa6359956f3c57a7567418427cfa536 450 SMART SM00729 104 332 6.0E-5 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APT56_07705 aaa6359956f3c57a7567418427cfa536 450 Pfam PF04055 Radical SAM superfamily 108 286 3.4E-11 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APT56_07705 aaa6359956f3c57a7567418427cfa536 450 Gene3D G3DSA:3.80.30.30 149 321 3.2E-7 T 11-10-2018 APT56_08540 116c0be477a7accf3bc533519d16299b 605 Pfam PF13687 Domain of unknown function (DUF4153) 159 390 8.2E-18 T 11-10-2018 IPR025291 Protein of unknown function DUF4153 APT56_27880 7aa7c70f886e094320797308202772fe 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 2.4E-15 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_27880 7aa7c70f886e094320797308202772fe 238 SUPERFAMILY SSF52172 2 186 5.27E-36 T 11-10-2018 IPR011006 CheY-like superfamily APT56_27880 7aa7c70f886e094320797308202772fe 238 Gene3D G3DSA:1.10.10.10 130 233 2.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_27880 7aa7c70f886e094320797308202772fe 238 Pfam PF00072 Response regulator receiver domain 6 113 9.8E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_27880 7aa7c70f886e094320797308202772fe 238 Gene3D G3DSA:3.40.50.2300 1 129 3.5E-32 T 11-10-2018 APT56_27880 7aa7c70f886e094320797308202772fe 238 SMART SM00862 148 224 1.5E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APT56_27880 7aa7c70f886e094320797308202772fe 238 SMART SM00448 1 113 2.5E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APT56_23115 52d53a82d0e648bd9de86d4e325fbb68 511 Pfam PF03929 PepSY-associated TM region 27 504 1.8E-18 T 11-10-2018 IPR005625 PepSY-associated TM protein APT56_16085 f4094eb521c304a3e190adbea040f980 443 Pfam PF03055 Retinal pigment epithelial membrane protein 12 439 1.3E-90 T 11-10-2018 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 APT56_04775 0f2d7958bb3389367abfd68e85373112 132 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 17 52 1.5E-11 T 11-10-2018 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal APT56_04775 0f2d7958bb3389367abfd68e85373112 132 SUPERFAMILY SSF50249 10 120 4.63E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APT56_04775 0f2d7958bb3389367abfd68e85373112 132 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 54 113 4.2E-18 T 11-10-2018 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal APT56_26355 34fe007dd584403e9dd71002f2c03a57 637 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 137 602 1.3E-212 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 APT56_26355 34fe007dd584403e9dd71002f2c03a57 637 Pfam PF13667 ThiC-associated domain 21 98 1.5E-31 T 11-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 APT56_26355 34fe007dd584403e9dd71002f2c03a57 637 Gene3D G3DSA:3.20.20.540 221 534 4.9E-152 T 11-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 APT56_26355 34fe007dd584403e9dd71002f2c03a57 637 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 137 603 99.115 T 11-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 APT56_26355 34fe007dd584403e9dd71002f2c03a57 637 Pfam PF01964 Radical SAM ThiC family 139 598 9.8E-198 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 APT56_11875 52a4faf8af61271c1ae6e1ac0ae89a94 532 SUPERFAMILY SSF53335 15 164 3.95E-29 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_11875 52a4faf8af61271c1ae6e1ac0ae89a94 532 Pfam PF10119 Predicted methyltransferase regulatory domain 221 305 9.4E-27 T 11-10-2018 IPR018773 Methyltransferase regulatory domain, predicted APT56_11875 52a4faf8af61271c1ae6e1ac0ae89a94 532 Pfam PF13847 Methyltransferase domain 50 155 5.8E-15 T 11-10-2018 IPR025714 Methyltransferase domain APT56_11875 52a4faf8af61271c1ae6e1ac0ae89a94 532 Gene3D G3DSA:3.40.50.150 12 212 5.3E-26 T 11-10-2018 APT56_14070 39e72aa66564b2069129d08b68d69d7f 433 Pfam PF13520 Amino acid permease 3 393 9.4E-39 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_14070 39e72aa66564b2069129d08b68d69d7f 433 PIRSF PIRSF006060 1 427 5.4E-58 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APT56_14070 39e72aa66564b2069129d08b68d69d7f 433 Gene3D G3DSA:1.20.1740.10 1 427 2.7E-69 T 11-10-2018 APT56_23580 6b796b074239721199ae677a6c2b8e6f 386 Pfam PF07690 Major Facilitator Superfamily 12 326 1.4E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_23580 6b796b074239721199ae677a6c2b8e6f 386 SUPERFAMILY SSF103473 7 366 9.81E-36 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_23580 6b796b074239721199ae677a6c2b8e6f 386 Gene3D G3DSA:1.20.1250.20 184 366 3.4E-14 T 11-10-2018 APT56_23580 6b796b074239721199ae677a6c2b8e6f 386 Gene3D G3DSA:1.20.1250.20 4 174 4.6E-13 T 11-10-2018 APT56_10415 3913206cace4fb75b4dd40a57dc3a67f 292 Pfam PF05013 N-formylglutamate amidohydrolase 20 252 7.0E-65 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase APT56_10415 3913206cace4fb75b4dd40a57dc3a67f 292 SUPERFAMILY SSF53187 9 282 4.19E-84 T 11-10-2018 APT56_10415 3913206cace4fb75b4dd40a57dc3a67f 292 Gene3D G3DSA:3.40.630.40 1 285 4.6E-109 T 11-10-2018 APT56_14950 4202aabb5b22ce9edb986ce97e3f899f 353 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 109 332 1.7E-51 T 11-10-2018 IPR005079 Peptidase C45 APT56_14950 4202aabb5b22ce9edb986ce97e3f899f 353 Gene3D G3DSA:3.60.60.10 78 341 2.7E-49 T 11-10-2018 APT56_09295 50431588243135dde705d737245bb067 212 Gene3D G3DSA:3.40.30.10 45 205 6.6E-16 T 11-10-2018 APT56_09295 50431588243135dde705d737245bb067 212 SUPERFAMILY SSF52833 46 168 3.12E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_09295 50431588243135dde705d737245bb067 212 TIGRFAM TIGR02661 MauD: methylamine dehydrogenase accessory protein MauD 4 191 2.8E-62 T 11-10-2018 IPR013478 Methylamine dehydrogenase accessory protein MauD GO:0030416 APT56_09295 50431588243135dde705d737245bb067 212 Pfam PF13098 Thioredoxin-like domain 76 175 2.4E-7 T 11-10-2018 IPR012336 Thioredoxin-like fold APT56_27175 991179d1b098f2a3f65890de34027b82 296 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 17 287 9.1E-67 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APT56_27175 991179d1b098f2a3f65890de34027b82 296 PIRSF PIRSF026649 1 296 6.2E-79 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APT56_21045 9c530bf0d0fa833965d24c8d3123f711 78 Pfam PF05751 FixH 17 47 2.1E-5 T 11-10-2018 IPR008620 Nitrogen fixation protein FixH APT56_13770 6a51cd387f0b6f2ff5390c08de6acbe9 152 PIRSF PIRSF006276 3 152 1.0E-17 T 11-10-2018 IPR006015 Universal stress protein A APT56_13770 6a51cd387f0b6f2ff5390c08de6acbe9 152 Pfam PF00582 Universal stress protein family 6 150 4.5E-34 T 11-10-2018 IPR006016 UspA APT56_13770 6a51cd387f0b6f2ff5390c08de6acbe9 152 PRINTS PR01438 Universal stress protein signature 5 23 3.2E-20 T 11-10-2018 IPR006015 Universal stress protein A APT56_13770 6a51cd387f0b6f2ff5390c08de6acbe9 152 PRINTS PR01438 Universal stress protein signature 128 150 3.2E-20 T 11-10-2018 IPR006015 Universal stress protein A APT56_13770 6a51cd387f0b6f2ff5390c08de6acbe9 152 PRINTS PR01438 Universal stress protein signature 110 122 3.2E-20 T 11-10-2018 IPR006015 Universal stress protein A APT56_13770 6a51cd387f0b6f2ff5390c08de6acbe9 152 Gene3D G3DSA:3.40.50.620 3 151 1.5E-39 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_13770 6a51cd387f0b6f2ff5390c08de6acbe9 152 SUPERFAMILY SSF52402 6 150 1.51E-37 T 11-10-2018 APT56_14335 4bba6d0797b4ca78d6e76a9950d19f0e 206 Pfam PF13628 Domain of unknown function (DUF4142) 33 169 4.4E-30 T 11-10-2018 IPR025419 Domain of unknown function DUF4142 APT56_21000 d3c708aae4bda4f7e49fc0c60fb72858 251 Pfam PF00005 ABC transporter 30 176 3.0E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_21000 d3c708aae4bda4f7e49fc0c60fb72858 251 Gene3D G3DSA:3.40.50.300 6 251 1.5E-76 T 11-10-2018 APT56_21000 d3c708aae4bda4f7e49fc0c60fb72858 251 SMART SM00382 37 232 3.1E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_21000 d3c708aae4bda4f7e49fc0c60fb72858 251 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_21000 d3c708aae4bda4f7e49fc0c60fb72858 251 PIRSF PIRSF039085 4 251 5.6E-97 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_21000 d3c708aae4bda4f7e49fc0c60fb72858 251 SUPERFAMILY SSF52540 7 246 1.86E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_05090 c6c5cd62a888caa321b5f259e2a292ae 261 Gene3D G3DSA:3.50.30.50 1 261 1.2E-89 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_05090 c6c5cd62a888caa321b5f259e2a292ae 261 SUPERFAMILY SSF102198 18 257 2.09E-52 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_05090 c6c5cd62a888caa321b5f259e2a292ae 261 Pfam PF04199 Putative cyclase 21 197 3.4E-31 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_22095 f421ac08fc5d70ebd1371bf4b79348b8 254 Gene3D G3DSA:3.90.226.10 5 250 2.0E-76 T 11-10-2018 APT56_22095 f421ac08fc5d70ebd1371bf4b79348b8 254 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 245 4.9E-51 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_22095 f421ac08fc5d70ebd1371bf4b79348b8 254 SUPERFAMILY SSF52096 3 247 2.34E-74 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_24070 3526ed2b0cf2480458e638f2aca96616 284 SUPERFAMILY SSF53474 31 257 2.89E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_24070 3526ed2b0cf2480458e638f2aca96616 284 Gene3D G3DSA:3.40.50.1820 21 257 1.6E-60 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_24070 3526ed2b0cf2480458e638f2aca96616 284 Pfam PF00135 Carboxylesterase family 45 147 5.4E-17 T 11-10-2018 IPR002018 Carboxylesterase, type B APT56_17635 6007db76b67ed2fe03a7a803c99a84b1 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 276 1.1E-34 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_10155 deed2978762d3e2928c35d981bf439cf 279 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 164 262 2.3E-18 T 11-10-2018 IPR006528 Phage head morphogenesis domain APT56_10155 deed2978762d3e2928c35d981bf439cf 279 Pfam PF04233 Phage Mu protein F like protein 161 262 7.3E-20 T 11-10-2018 IPR006528 Phage head morphogenesis domain APT56_01530 06b8eea871d7feeb02794591cce7f41f 265 Pfam PF01564 Spermine/spermidine synthase domain 62 206 1.6E-11 T 11-10-2018 APT56_01530 06b8eea871d7feeb02794591cce7f41f 265 SUPERFAMILY SSF53335 30 234 8.2E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_01530 06b8eea871d7feeb02794591cce7f41f 265 Gene3D G3DSA:3.40.50.150 31 252 9.5E-43 T 11-10-2018 APT56_26745 83946f5250c955309c13aed254bc2cee 191 Gene3D G3DSA:1.10.357.10 7 190 3.5E-47 T 11-10-2018 APT56_26745 83946f5250c955309c13aed254bc2cee 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 56 6.2E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_26745 83946f5250c955309c13aed254bc2cee 191 SUPERFAMILY SSF48498 83 179 5.56E-8 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily APT56_26745 83946f5250c955309c13aed254bc2cee 191 SUPERFAMILY SSF46689 4 72 3.07E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_00405 e45fdef6dcf628e2453cdd4d6f3a40af 109 Gene3D G3DSA:3.10.20.440 3 98 3.2E-8 T 11-10-2018 APT56_00405 e45fdef6dcf628e2453cdd4d6f3a40af 109 SUPERFAMILY SSF54292 15 90 1.73E-17 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_00405 e45fdef6dcf628e2453cdd4d6f3a40af 109 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 14 90 2.0E-21 T 11-10-2018 APT56_03010 e3798229e0bd13b7337b580da9192ba2 387 Gene3D G3DSA:3.40.50.2300 23 350 2.5E-91 T 11-10-2018 APT56_03010 e3798229e0bd13b7337b580da9192ba2 387 Gene3D G3DSA:3.40.50.2300 140 360 2.5E-91 T 11-10-2018 APT56_03010 e3798229e0bd13b7337b580da9192ba2 387 SUPERFAMILY SSF53822 22 385 2.05E-83 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_03010 e3798229e0bd13b7337b580da9192ba2 387 Pfam PF13458 Periplasmic binding protein 22 358 3.5E-68 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_05145 f565f105cf9e1d85230e11e982b4f523 329 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 8.3E-42 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_05145 f565f105cf9e1d85230e11e982b4f523 329 SUPERFAMILY SSF161098 89 305 5.63E-18 T 11-10-2018 IPR035906 MetI-like superfamily APT56_05145 f565f105cf9e1d85230e11e982b4f523 329 Gene3D G3DSA:1.10.3720.10 83 313 2.8E-22 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24805 3889ea17f5e2cbf22f57e5f5bc97053a 153 SUPERFAMILY SSF55729 9 150 1.67E-30 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_24805 3889ea17f5e2cbf22f57e5f5bc97053a 153 Gene3D G3DSA:3.40.630.30 1 150 7.2E-38 T 11-10-2018 APT56_24805 3889ea17f5e2cbf22f57e5f5bc97053a 153 Pfam PF00583 Acetyltransferase (GNAT) family 11 124 7.0E-18 T 11-10-2018 IPR000182 GNAT domain APT56_13630 74a4017051d165170be82a834353f289 71 Gene3D G3DSA:3.40.50.300 1 71 8.1E-16 T 11-10-2018 APT56_13630 74a4017051d165170be82a834353f289 71 SUPERFAMILY SSF52540 2 67 1.67E-14 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_20555 6b8bde48fb96b540f5a7551d4757827a 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 185 25.004 T 11-10-2018 IPR022929 Putative manganese efflux pump MntP APT56_20555 6b8bde48fb96b540f5a7551d4757827a 189 Pfam PF02659 Putative manganese efflux pump 31 182 6.9E-52 T 11-10-2018 IPR003810 Putative manganese efflux pump APT56_17665 e4677c036bded9ccc9de7ef9d72e469b 113 SUPERFAMILY SSF54292 8 109 2.06E-27 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APT56_17665 e4677c036bded9ccc9de7ef9d72e469b 113 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 43 53 - T 11-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 APT56_17665 e4677c036bded9ccc9de7ef9d72e469b 113 Gene3D G3DSA:3.10.20.30 1 113 7.3E-31 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APT56_17665 e4677c036bded9ccc9de7ef9d72e469b 113 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 6.9E-52 T 11-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 APT56_17665 e4677c036bded9ccc9de7ef9d72e469b 113 PRINTS PR00355 Adrenodoxin signature 84 92 3.1E-9 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 APT56_17665 e4677c036bded9ccc9de7ef9d72e469b 113 PRINTS PR00355 Adrenodoxin signature 61 75 3.1E-9 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 APT56_17665 e4677c036bded9ccc9de7ef9d72e469b 113 PRINTS PR00355 Adrenodoxin signature 43 53 3.1E-9 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 APT56_17665 e4677c036bded9ccc9de7ef9d72e469b 113 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 19 93 5.7E-12 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APT56_08525 6f724a2b90989b7d0f58f45405c9df01 234 Pfam PF11254 Protein of unknown function (DUF3053) 12 224 5.7E-47 T 11-10-2018 IPR021413 Protein of unknown function DUF3053 APT56_00460 bae8e447ffaeea432fb58a56f1fdf4c4 343 Gene3D G3DSA:3.40.190.10 40 309 2.4E-80 T 11-10-2018 APT56_00460 bae8e447ffaeea432fb58a56f1fdf4c4 343 Gene3D G3DSA:3.40.190.10 127 337 2.4E-80 T 11-10-2018 APT56_00460 bae8e447ffaeea432fb58a56f1fdf4c4 343 Pfam PF13343 Bacterial extracellular solute-binding protein 77 329 2.1E-32 T 11-10-2018 APT56_00460 bae8e447ffaeea432fb58a56f1fdf4c4 343 SUPERFAMILY SSF53850 25 338 1.46E-58 T 11-10-2018 APT56_18935 ee2fb2c39972fe00c8968bca622c6029 268 SUPERFAMILY SSF109854 107 255 1.26E-21 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes APT56_18935 ee2fb2c39972fe00c8968bca622c6029 268 Pfam PF12867 DinB superfamily 114 248 1.2E-9 T 11-10-2018 IPR024775 DinB-like domain APT56_18935 ee2fb2c39972fe00c8968bca622c6029 268 Gene3D G3DSA:1.20.120.450 107 256 1.7E-23 T 11-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes APT56_23465 4a74321a28905a06fa5778bf389d32bc 231 Gene3D G3DSA:2.60.120.620 20 227 2.5E-8 T 11-10-2018 APT56_23465 4a74321a28905a06fa5778bf389d32bc 231 Pfam PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA 60 230 4.4E-83 T 11-10-2018 IPR018655 Protein of unknown function DUF2086 APT56_12950 ff0cf619a8ed06450f1f1b0de423761a 338 ProSitePatterns PS01276 Peptidase family U32 signature. 168 186 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 APT56_12950 ff0cf619a8ed06450f1f1b0de423761a 338 Pfam PF01136 Peptidase family U32 83 337 7.3E-64 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 APT56_13220 bb9fff2879ef06be28d13234f20b7205 217 Pfam PF16357 Putative PepSY_TM-like 21 202 2.4E-12 T 11-10-2018 IPR032307 Putative PepSY TM-like protein APT56_24045 6863beea3faddf107529afc2cfc894c5 424 SUPERFAMILY SSF53335 25 363 5.31E-76 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_24045 6863beea3faddf107529afc2cfc894c5 424 Gene3D G3DSA:3.40.50.150 141 414 3.1E-101 T 11-10-2018 APT56_24045 6863beea3faddf107529afc2cfc894c5 424 Pfam PF02353 Mycolic acid cyclopropane synthetase 137 404 2.8E-79 T 11-10-2018 APT56_24045 6863beea3faddf107529afc2cfc894c5 424 PIRSF PIRSF003085 22 423 3.5E-116 T 11-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 APT56_22625 0dfdb3d45c56381afa55e0d317f14fcf 388 Gene3D G3DSA:3.40.1090.10 1 117 3.9E-18 T 11-10-2018 APT56_22625 0dfdb3d45c56381afa55e0d317f14fcf 388 Pfam PF01734 Patatin-like phospholipase 1 223 2.7E-20 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 APT56_22625 0dfdb3d45c56381afa55e0d317f14fcf 388 SUPERFAMILY SSF52151 1 260 1.46E-46 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APT56_08615 4c7950bad88883f8d22ea95ece6b0b67 221 Pfam PF11041 Protein of unknown function (DUF2612) 9 187 4.7E-58 T 11-10-2018 IPR021283 Protein of unknown function DUF2612 APT56_25390 306c03aad50e92fad6ef3a823a6ab433 85 Gene3D G3DSA:1.10.260.40 10 83 1.3E-11 T 11-10-2018 APT56_25390 306c03aad50e92fad6ef3a823a6ab433 85 Pfam PF13560 Helix-turn-helix domain 19 75 5.7E-7 T 11-10-2018 APT56_25390 306c03aad50e92fad6ef3a823a6ab433 85 SUPERFAMILY SSF47413 13 80 1.94E-9 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APT56_27570 9128bba9de55459df535ac02508a9b75 375 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 4 372 38.626 T 11-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 APT56_27570 9128bba9de55459df535ac02508a9b75 375 SMART SM00471 60 208 8.4E-11 T 11-10-2018 IPR003607 HD/PDEase domain APT56_27570 9128bba9de55459df535ac02508a9b75 375 Pfam PF13286 Phosphohydrolase-associated domain 285 370 1.3E-30 T 11-10-2018 IPR026875 Phosphohydrolase-associated domain APT56_27570 9128bba9de55459df535ac02508a9b75 375 Pfam PF01966 HD domain 64 198 3.4E-15 T 11-10-2018 IPR006674 HD domain APT56_27570 9128bba9de55459df535ac02508a9b75 375 Gene3D G3DSA:1.10.3210.10 1 373 1.4E-133 T 11-10-2018 APT56_27570 9128bba9de55459df535ac02508a9b75 375 SUPERFAMILY SSF109604 15 373 4.94E-91 T 11-10-2018 APT56_27570 9128bba9de55459df535ac02508a9b75 375 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 26 168 1.7E-56 T 11-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 APT56_14710 57ccf1a558100f093b7fff00d998090a 166 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 48 64 2.5E-11 T 11-10-2018 IPR002177 DNA-binding protein Dps APT56_14710 57ccf1a558100f093b7fff00d998090a 166 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 72 88 2.5E-11 T 11-10-2018 IPR002177 DNA-binding protein Dps APT56_14710 57ccf1a558100f093b7fff00d998090a 166 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 143 161 2.5E-11 T 11-10-2018 IPR002177 DNA-binding protein Dps APT56_14710 57ccf1a558100f093b7fff00d998090a 166 SUPERFAMILY SSF47240 14 166 7.63E-49 T 11-10-2018 IPR009078 Ferritin-like superfamily APT56_14710 57ccf1a558100f093b7fff00d998090a 166 Gene3D G3DSA:1.20.1260.10 5 166 3.8E-58 T 11-10-2018 IPR012347 Ferritin-like APT56_14710 57ccf1a558100f093b7fff00d998090a 166 Pfam PF00210 Ferritin-like domain 30 166 1.1E-31 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APT56_14710 57ccf1a558100f093b7fff00d998090a 166 ProSitePatterns PS00819 Dps protein family signature 2. 74 88 - T 11-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APT56_14710 57ccf1a558100f093b7fff00d998090a 166 PIRSF PIRSF005900 5 166 1.8E-45 T 11-10-2018 IPR002177 DNA-binding protein Dps APT56_21810 97786e7c00b8047b4ad3bf1cb8a30f35 83 Pfam PF13991 BssS protein family 14 74 1.9E-8 T 11-10-2018 IPR025730 Biofilm regulator BssS APT56_15880 6ad44dd244d222c23bf5f99ae619b2ea 352 SUPERFAMILY SSF56601 45 332 4.28E-55 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APT56_15880 6ad44dd244d222c23bf5f99ae619b2ea 352 Gene3D G3DSA:3.40.710.10 38 338 1.0E-45 T 11-10-2018 APT56_15880 6ad44dd244d222c23bf5f99ae619b2ea 352 Pfam PF00144 Beta-lactamase 72 328 5.6E-19 T 11-10-2018 IPR001466 Beta-lactamase-related APT56_14935 69fa0f6b123beb098000a18e0b7bbd21 242 SUPERFAMILY SSF52540 3 237 2.2E-80 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_14935 69fa0f6b123beb098000a18e0b7bbd21 242 PIRSF PIRSF039085 1 242 4.0E-111 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APT56_14935 69fa0f6b123beb098000a18e0b7bbd21 242 Pfam PF00005 ABC transporter 19 167 1.3E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_14935 69fa0f6b123beb098000a18e0b7bbd21 242 SMART SM00382 28 215 5.2E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14935 69fa0f6b123beb098000a18e0b7bbd21 242 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_14935 69fa0f6b123beb098000a18e0b7bbd21 242 Gene3D G3DSA:3.40.50.300 2 242 5.6E-78 T 11-10-2018 APT56_04540 2b31d5165311cfc03fc075989d19ffca 157 Pfam PF03692 Putative zinc- or iron-chelating domain 27 120 2.2E-9 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein APT56_26025 84c8242c08715d745ee9d6b91193ebbc 254 Pfam PF00005 ABC transporter 23 176 1.2E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_26025 84c8242c08715d745ee9d6b91193ebbc 254 Gene3D G3DSA:3.40.50.300 2 249 3.0E-61 T 11-10-2018 APT56_26025 84c8242c08715d745ee9d6b91193ebbc 254 SUPERFAMILY SSF52540 5 248 7.28E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26025 84c8242c08715d745ee9d6b91193ebbc 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 248 3.5E-14 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APT56_26025 84c8242c08715d745ee9d6b91193ebbc 254 SMART SM00382 31 226 8.9E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_14505 337a209af497a1bb998e821f6fb2b5d9 268 Gene3D G3DSA:3.40.190.10 29 261 2.3E-70 T 11-10-2018 APT56_14505 337a209af497a1bb998e821f6fb2b5d9 268 SUPERFAMILY SSF53850 29 268 2.27E-65 T 11-10-2018 APT56_14505 337a209af497a1bb998e821f6fb2b5d9 268 Gene3D G3DSA:3.40.190.10 110 213 2.3E-70 T 11-10-2018 APT56_14505 337a209af497a1bb998e821f6fb2b5d9 268 Pfam PF03180 NLPA lipoprotein 29 261 2.7E-66 T 11-10-2018 IPR004872 Lipoprotein NlpA family APT56_25745 7f48e31561cb60b974ebbd273cc6194d 257 Gene3D G3DSA:2.60.120.620 1 256 5.6E-54 T 11-10-2018 APT56_25745 7f48e31561cb60b974ebbd273cc6194d 257 SUPERFAMILY SSF51197 3 246 3.57E-59 T 11-10-2018 APT56_25745 7f48e31561cb60b974ebbd273cc6194d 257 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 14 224 1.2E-33 T 11-10-2018 IPR008775 Phytanoyl-CoA dioxygenase APT56_17775 554c37e8798f0224ee869b674f43318d 96 Pfam PF10711 Hypothetical protein (DUF2513) 3 83 2.6E-7 T 11-10-2018 IPR019650 Protein of unknown function DUF2513 APT56_24435 ea2bbbde51fc3d34d18a43884dd70d6d 406 TIGRFAM TIGR00843 benE: benzoate transporter 24 397 2.0E-105 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 APT56_24435 ea2bbbde51fc3d34d18a43884dd70d6d 406 Pfam PF03594 Benzoate membrane transport protein 21 397 7.7E-131 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 APT56_16375 12e5f703e094eb53475bffd0830a3224 438 Pfam PF07690 Major Facilitator Superfamily 34 396 1.1E-44 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_16375 12e5f703e094eb53475bffd0830a3224 438 Gene3D G3DSA:1.20.1250.20 17 438 2.5E-81 T 11-10-2018 APT56_16375 12e5f703e094eb53475bffd0830a3224 438 SUPERFAMILY SSF103473 15 437 4.97E-77 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_16375 12e5f703e094eb53475bffd0830a3224 438 ProSitePatterns PS00216 Sugar transport proteins signature 1. 310 325 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APT56_11620 28d8c3ceef51e7417ac4dd808b1ca9ed 59 SUPERFAMILY SSF47598 4 52 9.89E-8 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 APT56_11620 28d8c3ceef51e7417ac4dd808b1ca9ed 59 Gene3D G3DSA:1.10.1220.10 2 49 4.3E-5 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APT56_11620 28d8c3ceef51e7417ac4dd808b1ca9ed 59 Pfam PF01402 Ribbon-helix-helix protein, copG family 9 45 5.1E-6 T 11-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 APT56_17020 2b4d96bb3c90e7c360e1d26251bc7ffb 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 262 1.4E-53 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_17020 2b4d96bb3c90e7c360e1d26251bc7ffb 263 SUPERFAMILY SSF52096 9 263 1.19E-76 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_17020 2b4d96bb3c90e7c360e1d26251bc7ffb 263 Gene3D G3DSA:3.90.226.10 6 263 6.3E-79 T 11-10-2018 APT56_25405 1f7fd8db6e4a0d9de28978220a940adb 463 Pfam PF00860 Permease family 38 429 1.1E-91 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 APT56_25405 1f7fd8db6e4a0d9de28978220a940adb 463 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 376 396 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APT56_25405 1f7fd8db6e4a0d9de28978220a940adb 463 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 33 456 1.2E-119 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APT56_25405 1f7fd8db6e4a0d9de28978220a940adb 463 TIGRFAM TIGR03173 pbuX: xanthine permease 41 460 7.2E-126 T 11-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 APT56_13255 68d42f6dbad7833cf094afcc28e95058 162 Gene3D G3DSA:3.30.450.150 11 156 2.2E-39 T 11-10-2018 IPR038084 GlcG-like domain superfamily APT56_13255 68d42f6dbad7833cf094afcc28e95058 162 SUPERFAMILY SSF143744 23 155 2.22E-35 T 11-10-2018 IPR038084 GlcG-like domain superfamily APT56_13255 68d42f6dbad7833cf094afcc28e95058 162 Pfam PF03928 Haem-degrading 30 154 1.6E-28 T 11-10-2018 IPR005624 Haem-degrading APT56_18080 44349623d00397c41b9c44b2c12a41db 314 PIRSF PIRSF001439 1 312 4.2E-72 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 APT56_18080 44349623d00397c41b9c44b2c12a41db 314 SUPERFAMILY SSF51735 1 309 4.24E-92 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_18080 44349623d00397c41b9c44b2c12a41db 314 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 6 308 9.1E-68 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 APT56_18080 44349623d00397c41b9c44b2c12a41db 314 Gene3D G3DSA:3.40.50.720 121 293 2.5E-88 T 11-10-2018 APT56_18080 44349623d00397c41b9c44b2c12a41db 314 Gene3D G3DSA:3.30.1780.10 6 308 2.5E-88 T 11-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 APT56_27630 84c61715f4faeba3410c7d7e9e8275a1 207 SUPERFAMILY SSF52540 7 201 2.14E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_27630 84c61715f4faeba3410c7d7e9e8275a1 207 Gene3D G3DSA:3.40.50.300 1 205 3.2E-50 T 11-10-2018 APT56_27630 84c61715f4faeba3410c7d7e9e8275a1 207 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 7 197 5.7E-60 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 APT56_27630 84c61715f4faeba3410c7d7e9e8275a1 207 Pfam PF01926 50S ribosome-binding GTPase 26 151 6.5E-18 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APT56_27630 84c61715f4faeba3410c7d7e9e8275a1 207 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 12 201 26.024 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 APT56_22545 3ac8dc84639d9b1c9c0281a9ff8ccc58 161 Gene3D G3DSA:3.40.630.30 11 154 1.9E-29 T 11-10-2018 APT56_22545 3ac8dc84639d9b1c9c0281a9ff8ccc58 161 Pfam PF00583 Acetyltransferase (GNAT) family 45 140 4.4E-17 T 11-10-2018 IPR000182 GNAT domain APT56_22545 3ac8dc84639d9b1c9c0281a9ff8ccc58 161 SUPERFAMILY SSF55729 11 141 3.71E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_14290 331e31920d07536ebc77aac2578cf73a 703 Pfam PF13515 Fusaric acid resistance protein-like 404 529 1.8E-17 T 11-10-2018 APT56_14290 331e31920d07536ebc77aac2578cf73a 703 Pfam PF12805 FUSC-like inner membrane protein yccS 69 299 7.4E-9 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal APT56_19525 cba8abda0e2e1484de7c52a254cabdee 257 Pfam PF12697 Alpha/beta hydrolase family 35 247 4.3E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_19525 cba8abda0e2e1484de7c52a254cabdee 257 Gene3D G3DSA:3.40.50.1820 29 255 8.6E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_19525 cba8abda0e2e1484de7c52a254cabdee 257 SUPERFAMILY SSF53474 27 252 4.51E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_27545 959aaf10dc5e42c2677424ee2fab49ed 242 Gene3D G3DSA:3.40.50.150 24 242 5.3E-67 T 11-10-2018 APT56_27545 959aaf10dc5e42c2677424ee2fab49ed 242 Pfam PF08241 Methyltransferase domain 47 141 6.1E-21 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 APT56_27545 959aaf10dc5e42c2677424ee2fab49ed 242 SUPERFAMILY SSF53335 6 219 8.29E-39 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_05605 d54e7e032cfbb75dd199a80dc5f037f7 129 Pfam PF13663 Domain of unknown function (DUF4148) 1 54 8.8E-8 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_05605 d54e7e032cfbb75dd199a80dc5f037f7 129 Pfam PF13663 Domain of unknown function (DUF4148) 95 125 2.6E-7 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_16260 2dc2bad43f9d3a62081656b41df0598b 406 Gene3D G3DSA:1.20.1250.20 6 392 1.5E-34 T 11-10-2018 APT56_16260 2dc2bad43f9d3a62081656b41df0598b 406 Pfam PF05977 Transmembrane secretion effector 8 398 9.9E-28 T 11-10-2018 IPR010290 Transmembrane secretion effector APT56_16260 2dc2bad43f9d3a62081656b41df0598b 406 SUPERFAMILY SSF103473 9 399 2.35E-39 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_18630 24bec25fde1501ba0c37f6a510ae9b6f 315 SUPERFAMILY SSF51735 105 287 6.11E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_18630 24bec25fde1501ba0c37f6a510ae9b6f 315 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 17 310 3.3E-22 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APT56_18630 24bec25fde1501ba0c37f6a510ae9b6f 315 Gene3D G3DSA:3.40.50.720 15 309 2.7E-93 T 11-10-2018 APT56_18630 24bec25fde1501ba0c37f6a510ae9b6f 315 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 196 218 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT56_18630 24bec25fde1501ba0c37f6a510ae9b6f 315 SUPERFAMILY SSF52283 12 140 1.68E-24 T 11-10-2018 APT56_18630 24bec25fde1501ba0c37f6a510ae9b6f 315 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 286 1.2E-56 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_18630 24bec25fde1501ba0c37f6a510ae9b6f 315 Gene3D G3DSA:3.40.50.720 105 284 2.7E-93 T 11-10-2018 APT56_18630 24bec25fde1501ba0c37f6a510ae9b6f 315 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 225 241 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APT56_23475 5f68450fe8c21e7ec04d344f0d6b8f27 331 Pfam PF03781 Sulfatase-modifying factor enzyme 1 35 327 6.5E-64 T 11-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 APT56_23475 5f68450fe8c21e7ec04d344f0d6b8f27 331 Gene3D G3DSA:3.90.1580.10 19 331 8.3E-82 T 11-10-2018 APT56_23475 5f68450fe8c21e7ec04d344f0d6b8f27 331 SUPERFAMILY SSF56436 32 329 1.95E-74 T 11-10-2018 IPR016187 C-type lectin fold APT56_04625 cd43dc0152ba4209d263c0d9dba46eb4 228 SUPERFAMILY SSF53448 1 223 2.21E-56 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_04625 cd43dc0152ba4209d263c0d9dba46eb4 228 Gene3D G3DSA:3.90.550.10 1 225 6.0E-57 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_04625 cd43dc0152ba4209d263c0d9dba46eb4 228 Pfam PF00483 Nucleotidyl transferase 3 219 1.8E-22 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APT56_02005 38db17ed0987e189bb7045bcbbc0d4ad 125 Pfam PF05610 Protein of unknown function (DUF779) 17 110 2.5E-48 T 11-10-2018 IPR008497 Protein of unknown function DUF779 APT56_02005 38db17ed0987e189bb7045bcbbc0d4ad 125 PIRSF PIRSF009151 3 124 1.0E-57 T 11-10-2018 IPR008497 Protein of unknown function DUF779 APT56_08995 5a779777fd077b99c3f55ebd2b3dc396 241 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 20 204 3.3E-33 T 11-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APT56_08995 5a779777fd077b99c3f55ebd2b3dc396 241 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 18 212 23.051 T 11-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APT56_08995 5a779777fd077b99c3f55ebd2b3dc396 241 Gene3D G3DSA:3.10.300.10 11 211 1.5E-35 T 11-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APT56_08995 5a779777fd077b99c3f55ebd2b3dc396 241 SUPERFAMILY SSF50486 15 219 1.02E-50 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 APT56_11860 a6e060560f8eabce50e551b7854636a5 64 Pfam PF14070 Putative motility protein 14 62 1.1E-9 T 11-10-2018 IPR025906 Putative motility protein APT56_16510 aaf1f8b8fa715edcc93c45b276ca0b9e 137 SUPERFAMILY SSF46458 5 116 1.87E-24 T 11-10-2018 IPR009050 Globin-like superfamily APT56_16510 aaf1f8b8fa715edcc93c45b276ca0b9e 137 Gene3D G3DSA:1.10.490.10 3 119 3.1E-36 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 APT56_12920 9fcf7f1c800b32e6734a8719d6506bd6 252 Gene3D G3DSA:1.10.4030.30 74 204 4.0E-20 T 11-10-2018 APT56_12920 9fcf7f1c800b32e6734a8719d6506bd6 252 SUPERFAMILY SSF54534 89 195 2.49E-22 T 11-10-2018 APT56_12920 9fcf7f1c800b32e6734a8719d6506bd6 252 Pfam PF00639 PPIC-type PPIASE domain 99 191 3.2E-17 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 APT56_12920 9fcf7f1c800b32e6734a8719d6506bd6 252 Gene3D G3DSA:3.10.50.40 93 194 4.0E-20 T 11-10-2018 APT56_12920 9fcf7f1c800b32e6734a8719d6506bd6 252 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 131 151 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 APT56_00310 b43a8087d73387147fa6959fe4fcdb69 530 SUPERFAMILY SSF103473 17 403 2.49E-48 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_00310 b43a8087d73387147fa6959fe4fcdb69 530 Pfam PF05977 Transmembrane secretion effector 11 527 5.2E-207 T 11-10-2018 IPR010290 Transmembrane secretion effector APT56_00310 b43a8087d73387147fa6959fe4fcdb69 530 Gene3D G3DSA:1.20.1250.20 14 402 2.2E-40 T 11-10-2018 APT56_07445 36ab0188dd6cdff2f5623f2a8dda616f 315 Gene3D G3DSA:3.20.20.80 11 314 1.5E-16 T 11-10-2018 APT56_07445 36ab0188dd6cdff2f5623f2a8dda616f 315 Pfam PF14488 Domain of unknown function (DUF4434) 22 188 1.1E-28 T 11-10-2018 IPR027849 Protein of unknown function DUF4434 APT56_08010 fa928fbf8d00aea1d4fac21bde835ad8 376 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_08010 fa928fbf8d00aea1d4fac21bde835ad8 376 SMART SM00382 52 235 2.8E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_08010 fa928fbf8d00aea1d4fac21bde835ad8 376 SUPERFAMILY SSF52540 28 267 6.53E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_08010 fa928fbf8d00aea1d4fac21bde835ad8 376 Pfam PF00005 ABC transporter 43 185 6.5E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_08010 fa928fbf8d00aea1d4fac21bde835ad8 376 Gene3D G3DSA:3.40.50.300 23 262 4.8E-78 T 11-10-2018 APT56_08010 fa928fbf8d00aea1d4fac21bde835ad8 376 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 27 376 7.2E-156 T 11-10-2018 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 APT56_12190 035b7ddfd8f0d921791d42f8ea34c81d 436 Gene3D G3DSA:3.40.1190.10 6 292 6.3E-88 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_12190 035b7ddfd8f0d921791d42f8ea34c81d 436 Pfam PF08245 Mur ligase middle domain 53 267 6.5E-11 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APT56_12190 035b7ddfd8f0d921791d42f8ea34c81d 436 SUPERFAMILY SSF53623 13 289 5.76E-85 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APT56_12190 035b7ddfd8f0d921791d42f8ea34c81d 436 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 430 2.3E-97 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 APT56_12190 035b7ddfd8f0d921791d42f8ea34c81d 436 Gene3D G3DSA:3.90.190.20 293 435 1.6E-30 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_12190 035b7ddfd8f0d921791d42f8ea34c81d 436 SUPERFAMILY SSF53244 291 431 3.85E-31 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APT56_12190 035b7ddfd8f0d921791d42f8ea34c81d 436 PIRSF PIRSF001563 9 436 4.9E-102 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 APT56_06270 30e367717a8f594b4e46736241ac7059 378 Gene3D G3DSA:3.60.60.10 13 354 4.7E-86 T 11-10-2018 APT56_06270 30e367717a8f594b4e46736241ac7059 378 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 128 351 4.4E-13 T 11-10-2018 IPR005079 Peptidase C45 APT56_06270 30e367717a8f594b4e46736241ac7059 378 Gene3D G3DSA:1.10.10.2120 28 100 4.7E-86 T 11-10-2018 APT56_27200 7c1ea571ad42770f9e28a3d7c494e5f0 227 Pfam PF06226 Protein of unknown function (DUF1007) 15 226 5.8E-56 T 11-10-2018 IPR010412 Protein of unknown function DUF1007 APT56_14765 6062b8e446560419660b382df691493c 347 Gene3D G3DSA:3.40.190.10 34 307 1.2E-126 T 11-10-2018 APT56_14765 6062b8e446560419660b382df691493c 347 Pfam PF13343 Bacterial extracellular solute-binding protein 79 305 3.2E-18 T 11-10-2018 APT56_14765 6062b8e446560419660b382df691493c 347 PIRSF PIRSF002825 4 347 1.6E-86 T 11-10-2018 IPR026045 Ferric binding protein APT56_14765 6062b8e446560419660b382df691493c 347 SUPERFAMILY SSF53850 30 344 2.5E-74 T 11-10-2018 APT56_14765 6062b8e446560419660b382df691493c 347 Gene3D G3DSA:3.40.190.10 127 340 1.2E-126 T 11-10-2018 APT56_14915 9be71a4a74ea1b19fbbfb29a20d1fca9 309 SUPERFAMILY SSF46626 46 156 1.56E-29 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14915 9be71a4a74ea1b19fbbfb29a20d1fca9 309 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 173 253 1.5E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_14915 9be71a4a74ea1b19fbbfb29a20d1fca9 309 Gene3D G3DSA:1.10.760.10 163 277 3.0E-40 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14915 9be71a4a74ea1b19fbbfb29a20d1fca9 309 SUPERFAMILY SSF46626 161 265 5.3E-20 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_14915 9be71a4a74ea1b19fbbfb29a20d1fca9 309 Gene3D G3DSA:1.10.760.10 30 160 2.7E-39 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 9 132 3.0E-48 T 11-10-2018 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 Gene3D G3DSA:1.10.10.10 4 141 1.0E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 SUPERFAMILY SSF46785 6 142 2.03E-28 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 Pfam PF01047 MarR family 35 90 6.8E-14 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 SMART SM00347 27 127 3.9E-21 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 6.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 6.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_18370 61320f0c197eb1839dd72e9e5ddbd6a8 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 6.6E-8 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 APT56_08925 c0eec1e5b3c5ed4f95ed31abd04e987b 495 SUPERFAMILY SSF51338 352 468 4.63E-23 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_08925 c0eec1e5b3c5ed4f95ed31abd04e987b 495 Gene3D G3DSA:2.30.40.10 25 441 1.8E-88 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_08925 c0eec1e5b3c5ed4f95ed31abd04e987b 495 Pfam PF01979 Amidohydrolase family 105 440 1.2E-33 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_08925 c0eec1e5b3c5ed4f95ed31abd04e987b 495 SUPERFAMILY SSF51556 91 390 4.33E-53 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_08925 c0eec1e5b3c5ed4f95ed31abd04e987b 495 SUPERFAMILY SSF51338 12 410 1.01E-8 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APT56_08925 c0eec1e5b3c5ed4f95ed31abd04e987b 495 Gene3D G3DSA:3.20.20.140 63 391 1.8E-88 T 11-10-2018 APT56_14685 58045dc0ea998b56ca2a27036dc3dbe5 446 Pfam PF01061 ABC-2 type transporter 202 408 9.2E-10 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APT56_14685 58045dc0ea998b56ca2a27036dc3dbe5 446 PRINTS PR00164 ABC-2 type transport system membrane protein signature 220 241 3.3E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_14685 58045dc0ea998b56ca2a27036dc3dbe5 446 PRINTS PR00164 ABC-2 type transport system membrane protein signature 365 384 3.3E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_14685 58045dc0ea998b56ca2a27036dc3dbe5 446 PRINTS PR00164 ABC-2 type transport system membrane protein signature 385 404 3.3E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_14685 58045dc0ea998b56ca2a27036dc3dbe5 446 PRINTS PR00164 ABC-2 type transport system membrane protein signature 328 352 3.3E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APT56_03485 6315effc41977e4a5a508a63c7bef98b 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 11-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 APT56_03485 6315effc41977e4a5a508a63c7bef98b 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 31.332 T 11-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid APT56_03485 6315effc41977e4a5a508a63c7bef98b 130 SUPERFAMILY SSF54211 5 130 3.79E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APT56_03485 6315effc41977e4a5a508a63c7bef98b 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 3.1E-45 T 11-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 APT56_03485 6315effc41977e4a5a508a63c7bef98b 130 Gene3D G3DSA:3.30.230.10 2 130 1.4E-50 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APT56_00985 be2c59ebac6bb5a488270ae371cf251b 287 SUPERFAMILY SSF103481 38 139 4.84E-15 T 11-10-2018 APT56_00985 be2c59ebac6bb5a488270ae371cf251b 287 Pfam PF00892 EamA-like transporter family 2 136 3.6E-25 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_00985 be2c59ebac6bb5a488270ae371cf251b 287 Pfam PF00892 EamA-like transporter family 150 282 2.4E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_00985 be2c59ebac6bb5a488270ae371cf251b 287 SUPERFAMILY SSF103481 185 285 6.8E-10 T 11-10-2018 APT56_07970 5d0c90158ea8353f9a07452361ec8ede 262 Gene3D G3DSA:3.40.50.1820 21 261 3.7E-63 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_07970 5d0c90158ea8353f9a07452361ec8ede 262 Pfam PF01738 Dienelactone hydrolase family 36 262 5.8E-65 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 APT56_07970 5d0c90158ea8353f9a07452361ec8ede 262 SUPERFAMILY SSF53474 26 262 3.7E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_27075 2d01c0c9917c2c28111951f79ad0e233 111 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 1 103 6.3E-33 T 11-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV APT56_07145 93855c5326a56753f6f87c815cb4eddf 296 Pfam PF13714 Phosphoenolpyruvate phosphomutase 12 255 5.8E-53 T 11-10-2018 APT56_07145 93855c5326a56753f6f87c815cb4eddf 296 ProSitePatterns PS00161 Isocitrate lyase signature. 122 127 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 APT56_07145 93855c5326a56753f6f87c815cb4eddf 296 SUPERFAMILY SSF51621 5 291 1.93E-101 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_07145 93855c5326a56753f6f87c815cb4eddf 296 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 8 292 8.5E-127 T 11-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 APT56_07145 93855c5326a56753f6f87c815cb4eddf 296 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 5 293 48.521 T 11-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 APT56_07145 93855c5326a56753f6f87c815cb4eddf 296 Gene3D G3DSA:3.20.20.60 5 296 1.2E-103 T 11-10-2018 APT56_00595 bd4c712031421ac55f35a60532045ae2 239 Gene3D G3DSA:3.90.870.10 14 223 1.2E-78 T 11-10-2018 APT56_00595 bd4c712031421ac55f35a60532045ae2 239 SUPERFAMILY SSF55821 21 219 1.03E-76 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APT56_00595 bd4c712031421ac55f35a60532045ae2 239 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 26 215 3.0E-75 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_00595 bd4c712031421ac55f35a60532045ae2 239 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 19 221 40.784 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_00595 bd4c712031421ac55f35a60532045ae2 239 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 23 216 1.8E-67 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APT56_01660 9a4f1d4d45f842b272d5632e1884dbdc 208 SUPERFAMILY SSF51182 5 176 9.78E-53 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_01660 9a4f1d4d45f842b272d5632e1884dbdc 208 Gene3D G3DSA:2.60.120.10 15 117 8.4E-57 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_01660 9a4f1d4d45f842b272d5632e1884dbdc 208 Gene3D G3DSA:2.60.120.10 10 177 8.4E-57 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_01660 9a4f1d4d45f842b272d5632e1884dbdc 208 Pfam PF05962 HutD 12 178 2.3E-52 T 11-10-2018 IPR010282 Uncharacterised protein family HutD/Ves APT56_21725 91aaa85f2f2c49ee10d95dc057f72cd5 254 Pfam PF01925 Sulfite exporter TauE/SafE 10 242 2.2E-14 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_13585 edb2f8238a5d71289b91884fa7ffde1f 508 SUPERFAMILY SSF51556 21 481 1.25E-37 T 11-10-2018 IPR032466 Metal-dependent hydrolase APT56_13585 edb2f8238a5d71289b91884fa7ffde1f 508 Pfam PF04909 Amidohydrolase 95 324 2.5E-13 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APT56_22125 6e444d608cd7cf31d3d18435290e8ccb 162 SUPERFAMILY SSF55826 10 159 1.22E-43 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APT56_22125 6e444d608cd7cf31d3d18435290e8ccb 162 Gene3D G3DSA:3.90.960.10 3 161 7.9E-49 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APT56_22125 6e444d608cd7cf31d3d18435290e8ccb 162 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 10 155 1.6E-48 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC APT56_22125 6e444d608cd7cf31d3d18435290e8ccb 162 Pfam PF04073 Aminoacyl-tRNA editing domain 37 150 1.8E-27 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APT56_22125 6e444d608cd7cf31d3d18435290e8ccb 162 PIRSF PIRSF006181 5 162 6.5E-48 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC APT56_22950 a7bffd02fd866f6223bee2f977d6383d 192 Pfam PF02417 Chromate transporter 21 178 3.1E-29 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT56_08420 a3858764f903adc62189d4f90c7a4963 486 SUPERFAMILY SSF111283 28 485 6.02E-131 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 APT56_08420 a3858764f903adc62189d4f90c7a4963 486 PIRSF PIRSF004919 23 486 7.8E-136 T 11-10-2018 IPR025502 TldD APT56_08420 a3858764f903adc62189d4f90c7a4963 486 Gene3D G3DSA:3.30.2290.10 19 240 1.6E-17 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal APT56_08420 a3858764f903adc62189d4f90c7a4963 486 Pfam PF01523 Putative modulator of DNA gyrase 43 337 5.3E-67 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APT56_26195 f7d8b8b3816fa1bcdf951f3a9f1a16c6 695 Gene3D G3DSA:2.170.130.10 53 170 1.9E-31 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APT56_26195 f7d8b8b3816fa1bcdf951f3a9f1a16c6 695 Pfam PF00593 TonB dependent receptor 332 694 6.6E-43 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APT56_26195 f7d8b8b3816fa1bcdf951f3a9f1a16c6 695 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 160 6.1E-21 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APT56_26195 f7d8b8b3816fa1bcdf951f3a9f1a16c6 695 SUPERFAMILY SSF56935 44 694 1.21E-98 T 11-10-2018 APT56_18090 685086181b84bec04cc07c4e452d07c6 429 Pfam PF01566 Natural resistance-associated macrophage protein 45 401 4.3E-95 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 APT56_18090 685086181b84bec04cc07c4e452d07c6 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 104 130 2.0E-38 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 APT56_18090 685086181b84bec04cc07c4e452d07c6 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 372 391 2.0E-38 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 APT56_18090 685086181b84bec04cc07c4e452d07c6 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 157 178 2.0E-38 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 APT56_18090 685086181b84bec04cc07c4e452d07c6 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 132 151 2.0E-38 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 APT56_18090 685086181b84bec04cc07c4e452d07c6 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 209 232 2.0E-38 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 APT56_18090 685086181b84bec04cc07c4e452d07c6 429 PRINTS PR00447 Natural resistance-associated macrophage protein signature 311 330 2.0E-38 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 APT56_23490 d18169668e1302fffcd1c9edaa5f7866 122 Pfam PF07883 Cupin domain 40 94 3.3E-11 T 11-10-2018 IPR013096 Cupin 2, conserved barrel APT56_23490 d18169668e1302fffcd1c9edaa5f7866 122 SUPERFAMILY SSF51182 1 110 2.65E-23 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_23490 d18169668e1302fffcd1c9edaa5f7866 122 Gene3D G3DSA:2.60.120.10 4 105 2.5E-34 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_14695 bc79ba79c94da9d7367e9978da4f26e9 687 Gene3D G3DSA:3.40.50.2000 463 651 1.1E-39 T 11-10-2018 APT56_14695 bc79ba79c94da9d7367e9978da4f26e9 687 Pfam PF13439 Glycosyltransferase Family 4 258 463 7.4E-7 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APT56_14695 bc79ba79c94da9d7367e9978da4f26e9 687 Gene3D G3DSA:3.40.50.2000 361 660 1.1E-39 T 11-10-2018 APT56_14695 bc79ba79c94da9d7367e9978da4f26e9 687 SUPERFAMILY SSF53756 248 663 3.04E-48 T 11-10-2018 APT56_14695 bc79ba79c94da9d7367e9978da4f26e9 687 Pfam PF00534 Glycosyl transferases group 1 487 628 2.5E-21 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APT56_13120 21fcd0038377850cae29dee12917f431 277 Pfam PF13827 Domain of unknown function (DUF4189) 34 125 1.0E-15 T 11-10-2018 IPR025240 Domain of unknown function DUF4189 APT56_13120 21fcd0038377850cae29dee12917f431 277 Pfam PF13827 Domain of unknown function (DUF4189) 165 255 8.8E-8 T 11-10-2018 IPR025240 Domain of unknown function DUF4189 APT56_12545 bbca4a93542ac5f9cb0a75a8224ec626 107 SUPERFAMILY SSF48452 4 78 2.85E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_12545 bbca4a93542ac5f9cb0a75a8224ec626 107 Gene3D G3DSA:1.25.40.10 1 105 1.4E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_18260 4f65453bed93133b1d2ee92a0ea2b825 745 Pfam PF07095 Intracellular growth attenuator protein IgaA 13 733 5.7E-34 T 11-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 APT56_18260 4f65453bed93133b1d2ee92a0ea2b825 745 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 308 678 4.0E-6 T 11-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 APT56_17400 af3ac133fc9b44f0d45db9d708f2d797 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 4 92 8.6E-26 T 11-10-2018 IPR007711 Toxin HigB-1 APT56_17400 af3ac133fc9b44f0d45db9d708f2d797 92 SUPERFAMILY SSF143011 1 92 4.71E-15 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily APT56_17400 af3ac133fc9b44f0d45db9d708f2d797 92 Gene3D G3DSA:3.30.2310.20 1 92 2.8E-35 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily APT56_22945 0a2ae1b22e164d61f27bb522402a622f 174 Pfam PF02417 Chromate transporter 8 169 8.1E-33 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT56_22945 0a2ae1b22e164d61f27bb522402a622f 174 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 18 32 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APT56_20895 2d1e26485b5fe294985ae8d64031c99a 338 PRINTS PR00184 Neisseria sp. porin signature 296 320 8.1E-6 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_20895 2d1e26485b5fe294985ae8d64031c99a 338 PRINTS PR00184 Neisseria sp. porin signature 59 84 8.1E-6 T 11-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 APT56_20895 2d1e26485b5fe294985ae8d64031c99a 338 SUPERFAMILY SSF56935 29 338 4.27E-67 T 11-10-2018 APT56_20895 2d1e26485b5fe294985ae8d64031c99a 338 Gene3D G3DSA:2.40.160.10 29 338 3.4E-79 T 11-10-2018 IPR023614 Porin domain superfamily APT56_20895 2d1e26485b5fe294985ae8d64031c99a 338 Pfam PF13609 Gram-negative porin 14 321 4.0E-53 T 11-10-2018 APT56_07585 cb734c6bca7f8a5cc51d70b6af5b364c 405 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 6 403 32.979 T 11-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 APT56_07585 cb734c6bca7f8a5cc51d70b6af5b364c 405 SUPERFAMILY SSF48452 40 176 1.07E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_07585 cb734c6bca7f8a5cc51d70b6af5b364c 405 Gene3D G3DSA:1.25.40.10 19 173 9.1E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_18595 42109d18fdb2498c8712cc864e1c8150 157 SUPERFAMILY SSF82784 4 151 2.09E-44 T 11-10-2018 IPR036102 OsmC/Ohr superfamily APT56_18595 42109d18fdb2498c8712cc864e1c8150 157 Pfam PF02566 OsmC-like protein 51 146 4.3E-10 T 11-10-2018 IPR003718 OsmC/Ohr family APT56_18595 42109d18fdb2498c8712cc864e1c8150 157 Gene3D G3DSA:3.30.300.20 1 150 2.0E-49 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_26030 a2f10a276ba230a42fe8c82cd13e31e1 239 Gene3D G3DSA:3.40.50.300 1 239 1.4E-62 T 11-10-2018 APT56_26030 a2f10a276ba230a42fe8c82cd13e31e1 239 SMART SM00382 30 218 1.8E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_26030 a2f10a276ba230a42fe8c82cd13e31e1 239 PIRSF PIRSF039137 1 239 2.3E-103 T 11-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 APT56_26030 a2f10a276ba230a42fe8c82cd13e31e1 239 SUPERFAMILY SSF52540 4 236 3.55E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_26030 a2f10a276ba230a42fe8c82cd13e31e1 239 Pfam PF00005 ABC transporter 21 166 2.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_07470 f55997bb5d9feb068d86bc01fb9cdea6 526 PIRSF PIRSF500217 1 526 3.4E-122 T 11-10-2018 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 APT56_07470 f55997bb5d9feb068d86bc01fb9cdea6 526 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 144 306 1.7E-17 T 11-10-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT APT56_07470 f55997bb5d9feb068d86bc01fb9cdea6 526 PIRSF PIRSF016636 1 526 2.9E-123 T 11-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB APT56_12095 9a3012da421bc569b6ce0b9e55238137 456 Gene3D G3DSA:3.30.750.140 306 422 4.1E-34 T 11-10-2018 IPR038610 FliK-like, C-terminal domain superfamily APT56_12095 9a3012da421bc569b6ce0b9e55238137 456 Pfam PF02120 Flagellar hook-length control protein FliK 332 409 3.1E-22 T 11-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal APT56_12885 ebb0f192b6b9900159d105a1be088299 416 Pfam PF05940 NnrS protein 23 393 5.5E-91 T 11-10-2018 IPR010266 NnrS APT56_03045 f541e18619e5e51f323ed8f1fa504afe 125 Pfam PF09345 Domain of unknown function (DUF1987) 6 122 2.8E-38 T 11-10-2018 IPR018530 Domain of unknown function DUF1987 APT56_06295 fa7725c81bbe912bd3893a7690ec1008 656 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 14 495 1.4E-197 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 APT56_06295 fa7725c81bbe912bd3893a7690ec1008 656 ProSitePatterns PS01303 BCCT family of transporters signature. 314 323 - T 11-10-2018 IPR018093 BCCT transporter, conserved site APT56_06295 fa7725c81bbe912bd3893a7690ec1008 656 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 52 497 6.4E-160 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 APT56_08215 30c2ad2da9a0c70ab592c8339c179a30 69 Pfam PF11381 Protein of unknown function (DUF3185) 2 61 3.4E-5 T 11-10-2018 IPR021521 Protein of unknown function DUF3185 APT56_22040 288a7cc53a7d1f9db5f9435478e1cb7c 887 SUPERFAMILY SSF52540 220 565 2.3E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22040 288a7cc53a7d1f9db5f9435478e1cb7c 887 TIGRFAM TIGR03623 TIGR03623: probable DNA repair protein 24 880 4.5E-243 T 11-10-2018 IPR019925 DNA repair protein, predicted APT56_22040 288a7cc53a7d1f9db5f9435478e1cb7c 887 Pfam PF12705 PD-(D/E)XK nuclease superfamily 608 872 1.5E-18 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type APT56_08395 6027f161d4738cc56fa4c45ee237945c 73 Gene3D G3DSA:2.30.30.100 20 73 6.7E-18 T 11-10-2018 APT56_08395 6027f161d4738cc56fa4c45ee237945c 73 SUPERFAMILY SSF50182 22 72 4.2E-13 T 11-10-2018 IPR010920 LSM domain superfamily APT56_08395 6027f161d4738cc56fa4c45ee237945c 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 71 4.1E-17 T 11-10-2018 IPR010305 Protein of unknown function DUF903 APT56_25365 56182350a3ae4c2471617203071648b0 462 Pfam PF12679 ABC-2 family transporter protein 4 292 1.1E-24 T 11-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 APT56_17740 167625cbe6d6b775dd3de9e09f6d92b1 251 Pfam PF01435 Peptidase family M48 73 246 1.1E-25 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT56_17740 167625cbe6d6b775dd3de9e09f6d92b1 251 Gene3D G3DSA:3.30.2010.10 61 147 6.3E-8 T 11-10-2018 APT56_03455 5571d102956525f53bfc0f14ad7e7c4e 384 Gene3D G3DSA:3.40.50.2300 29 330 4.5E-95 T 11-10-2018 APT56_03455 5571d102956525f53bfc0f14ad7e7c4e 384 Gene3D G3DSA:3.40.50.2300 144 276 4.5E-95 T 11-10-2018 APT56_03455 5571d102956525f53bfc0f14ad7e7c4e 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 89 99 4.5E-12 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_03455 5571d102956525f53bfc0f14ad7e7c4e 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 4.5E-12 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_03455 5571d102956525f53bfc0f14ad7e7c4e 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 280 293 4.5E-12 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_03455 5571d102956525f53bfc0f14ad7e7c4e 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 4.5E-12 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_03455 5571d102956525f53bfc0f14ad7e7c4e 384 Pfam PF13458 Periplasmic binding protein 26 361 1.5E-59 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_03455 5571d102956525f53bfc0f14ad7e7c4e 384 SUPERFAMILY SSF53822 26 360 8.64E-82 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_03305 e672975b63b51cf30a8d3c1946b6828b 308 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 301 1.1E-62 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APT56_03305 e672975b63b51cf30a8d3c1946b6828b 308 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 307 5.5E-82 T 11-10-2018 APT56_03305 e672975b63b51cf30a8d3c1946b6828b 308 Gene3D G3DSA:3.40.50.150 109 308 2.7E-54 T 11-10-2018 APT56_03305 e672975b63b51cf30a8d3c1946b6828b 308 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 1 307 31.266 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APT56_03305 e672975b63b51cf30a8d3c1946b6828b 308 SUPERFAMILY SSF53335 90 303 2.34E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_03305 e672975b63b51cf30a8d3c1946b6828b 308 PIRSF PIRSF000401 1 308 3.2E-84 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APT56_24075 4c749abae40a7f3f0173a4e5540e5c76 223 Pfam PF10099 Anti-sigma-K factor rskA 62 218 2.6E-26 T 11-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 APT56_03960 2e6197bc1cc2e154aad50c872773ba4e 272 Gene3D G3DSA:3.20.20.370 1 267 2.3E-28 T 11-10-2018 APT56_03960 2e6197bc1cc2e154aad50c872773ba4e 272 Pfam PF04794 YdjC-like protein 4 258 6.9E-45 T 11-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like APT56_03960 2e6197bc1cc2e154aad50c872773ba4e 272 SUPERFAMILY SSF88713 2 265 2.0E-53 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_25300 5d4b10f54e16a5a71d45ef0f75fe6641 452 Gene3D G3DSA:1.20.1600.10 30 451 2.3E-83 T 11-10-2018 APT56_25300 5d4b10f54e16a5a71d45ef0f75fe6641 452 SUPERFAMILY SSF56954 29 446 3.79E-72 T 11-10-2018 APT56_25300 5d4b10f54e16a5a71d45ef0f75fe6641 452 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 27 449 1.5E-88 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 APT56_25300 5d4b10f54e16a5a71d45ef0f75fe6641 452 Pfam PF02321 Outer membrane efflux protein 251 430 5.3E-24 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_25300 5d4b10f54e16a5a71d45ef0f75fe6641 452 Pfam PF02321 Outer membrane efflux protein 31 222 5.0E-21 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_10715 0b272fb110d02f204fa50c740679cc47 307 Gene3D G3DSA:2.30.110.10 159 283 4.5E-15 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_10715 0b272fb110d02f204fa50c740679cc47 307 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 162 254 1.4E-13 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APT56_10715 0b272fb110d02f204fa50c740679cc47 307 SUPERFAMILY SSF50475 159 275 6.93E-11 T 11-10-2018 APT56_24540 40aba31af30f204b96067f5e75228613 72 Pfam PF10932 Protein of unknown function (DUF2783) 2 59 2.4E-30 T 11-10-2018 IPR021233 Protein of unknown function DUF2783 APT56_16060 169e4d5a3ba8a4db8e06503745adf3a6 213 SUPERFAMILY SSF50969 18 209 1.8E-24 T 11-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like APT56_16060 169e4d5a3ba8a4db8e06503745adf3a6 213 Gene3D G3DSA:2.130.10.10 10 210 1.9E-15 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 APT56_16060 169e4d5a3ba8a4db8e06503745adf3a6 213 Pfam PF13360 PQQ-like domain 73 207 1.7E-4 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat APT56_19095 36906f4761a4f53ff8381ce8d7538c43 280 SUPERFAMILY SSF161098 84 269 2.88E-23 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19095 36906f4761a4f53ff8381ce8d7538c43 280 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 73 270 7.7E-72 T 11-10-2018 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 APT56_19095 36906f4761a4f53ff8381ce8d7538c43 280 Gene3D G3DSA:1.10.3720.10 86 276 3.4E-18 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19095 36906f4761a4f53ff8381ce8d7538c43 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 276 3.6E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_12505 2e1117bac5d20dd485f491961f274bcd 154 Pfam PF00583 Acetyltransferase (GNAT) family 43 143 5.9E-17 T 11-10-2018 IPR000182 GNAT domain APT56_12505 2e1117bac5d20dd485f491961f274bcd 154 Gene3D G3DSA:3.40.630.30 5 154 4.2E-40 T 11-10-2018 APT56_12505 2e1117bac5d20dd485f491961f274bcd 154 SUPERFAMILY SSF55729 2 148 1.89E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_01995 c9d7a8450d6b33ffa6aae1cdc91eff1d 84 Pfam PF11142 Protein of unknown function (DUF2917) 12 70 3.3E-14 T 11-10-2018 IPR021317 Protein of unknown function DUF2917 APT56_10885 ed9c832056bb13c58f5bbee9e976a48c 297 Pfam PF13557 Putative MetA-pathway of phenol degradation 65 292 6.6E-61 T 11-10-2018 IPR025737 MetA-pathway of phenol degradation, putative APT56_04990 43f1338897f96ea0734fad6e0b843d43 493 Gene3D G3DSA:1.20.1600.10 44 486 8.9E-74 T 11-10-2018 APT56_04990 43f1338897f96ea0734fad6e0b843d43 493 SUPERFAMILY SSF56954 2 485 1.44E-62 T 11-10-2018 APT56_04990 43f1338897f96ea0734fad6e0b843d43 493 Pfam PF02321 Outer membrane efflux protein 294 477 1.0E-19 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_04990 43f1338897f96ea0734fad6e0b843d43 493 Pfam PF02321 Outer membrane efflux protein 57 270 3.9E-15 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APT56_21950 e6d5d1d6a83e5cbd9cc9d0a3378e62bf 298 Gene3D G3DSA:2.60.120.330 43 228 4.2E-43 T 11-10-2018 IPR027443 Isopenicillin N synthase-like APT56_21950 e6d5d1d6a83e5cbd9cc9d0a3378e62bf 298 SUPERFAMILY SSF51197 98 224 3.02E-19 T 11-10-2018 APT56_21950 e6d5d1d6a83e5cbd9cc9d0a3378e62bf 298 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 71 222 1.2E-45 T 11-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 APT56_14495 0642aa7acc9da4e467744b5a24ba0f22 403 SUPERFAMILY SSF103473 12 397 1.03E-52 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_14495 0642aa7acc9da4e467744b5a24ba0f22 403 Pfam PF07690 Major Facilitator Superfamily 25 247 1.3E-21 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_14495 0642aa7acc9da4e467744b5a24ba0f22 403 Gene3D G3DSA:1.20.1250.20 18 388 3.8E-44 T 11-10-2018 APT56_12500 f37f87d2ca1dc7697636558bdd2a4a4a 91 SUPERFAMILY SSF82649 5 61 5.23E-5 T 11-10-2018 APT56_12500 f37f87d2ca1dc7697636558bdd2a4a4a 91 Gene3D G3DSA:3.30.390.50 1 88 1.7E-22 T 11-10-2018 APT56_12500 f37f87d2ca1dc7697636558bdd2a4a4a 91 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 7 63 9.9E-6 T 11-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 APT56_10395 6f7171ca2b113c1004aa446e0fb3be7d 368 Gene3D G3DSA:1.50.10.10 2 366 8.8E-58 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 APT56_10395 6f7171ca2b113c1004aa446e0fb3be7d 368 SUPERFAMILY SSF48208 12 365 2.18E-79 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 APT56_10395 6f7171ca2b113c1004aa446e0fb3be7d 368 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 42 360 3.4E-37 T 11-10-2018 APT56_26820 ed5ce7df0729d12a4bf8f069f59f637f 163 SUPERFAMILY SSF110087 6 149 4.58E-48 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily APT56_26820 ed5ce7df0729d12a4bf8f069f59f637f 163 Gene3D G3DSA:2.60.40.1890 35 151 2.9E-39 T 11-10-2018 IPR036182 Copper chaperone PCuAC superfamily APT56_26820 ed5ce7df0729d12a4bf8f069f59f637f 163 Pfam PF04314 Copper chaperone PCu(A)C 32 141 1.3E-41 T 11-10-2018 IPR007410 Copper chaperone PCuAC APT56_08945 c09467019c156ca1a9129db5c9a70712 166 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 151 1.3E-28 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_13920 26d52446198b8354b4bc4f64b6c9ba71 441 SUPERFAMILY SSF103473 13 429 1.22E-55 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_13920 26d52446198b8354b4bc4f64b6c9ba71 441 Pfam PF00083 Sugar (and other) transporter 16 227 3.1E-21 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 APT56_13920 26d52446198b8354b4bc4f64b6c9ba71 441 Gene3D G3DSA:1.20.1250.20 11 438 1.5E-51 T 11-10-2018 APT56_19835 1682154771f0e74e04d7faa5431f7232 325 SUPERFAMILY SSF161098 109 306 1.8E-11 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19835 1682154771f0e74e04d7faa5431f7232 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 130 323 1.3E-27 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_19835 1682154771f0e74e04d7faa5431f7232 325 Gene3D G3DSA:1.10.3720.10 106 317 5.0E-13 T 11-10-2018 IPR035906 MetI-like superfamily APT56_19970 c72df50a9a0293f9715e84b52a36b782 295 Pfam PF00535 Glycosyl transferase family 2 8 132 6.6E-12 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APT56_19970 c72df50a9a0293f9715e84b52a36b782 295 Gene3D G3DSA:3.90.550.10 2 253 5.2E-18 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_19970 c72df50a9a0293f9715e84b52a36b782 295 SUPERFAMILY SSF53448 2 191 1.97E-18 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APT56_04335 2a4b3149242c65fd006b4cd9270372b1 397 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 28 387 1.8E-121 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04335 2a4b3149242c65fd006b4cd9270372b1 397 Pfam PF01098 Cell cycle protein 30 389 1.2E-99 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_04335 2a4b3149242c65fd006b4cd9270372b1 397 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 23 396 38.837 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APT56_18435 7cab0492427f08e7101f77ad1937228b 184 Pfam PF03729 Short repeat of unknown function (DUF308) 19 88 4.0E-12 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane APT56_18435 7cab0492427f08e7101f77ad1937228b 184 Pfam PF03729 Short repeat of unknown function (DUF308) 133 180 1.1E-6 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane APT56_18435 7cab0492427f08e7101f77ad1937228b 184 Pfam PF03729 Short repeat of unknown function (DUF308) 76 146 6.9E-15 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane APT56_21005 93d9273d238db7b9761c0284f572637f 500 SUPERFAMILY SSF53720 18 487 1.2E-133 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APT56_21005 93d9273d238db7b9761c0284f572637f 500 Pfam PF00171 Aldehyde dehydrogenase family 23 479 1.8E-130 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APT56_21005 93d9273d238db7b9761c0284f572637f 500 Gene3D G3DSA:3.40.309.10 257 451 1.5E-141 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APT56_21005 93d9273d238db7b9761c0284f572637f 500 Gene3D G3DSA:3.40.605.10 24 476 1.5E-141 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APT56_21005 93d9273d238db7b9761c0284f572637f 500 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APT56_03815 baef060e25860fec4d58f8c9fb9c567f 395 Pfam PF04392 ABC transporter substrate binding protein 136 391 1.2E-17 T 11-10-2018 IPR007487 ABC transporter, substrate-binding protein APT56_03815 baef060e25860fec4d58f8c9fb9c567f 395 Gene3D G3DSA:3.40.50.2300 203 388 1.5E-32 T 11-10-2018 APT56_03815 baef060e25860fec4d58f8c9fb9c567f 395 Gene3D G3DSA:3.40.50.2300 129 363 1.5E-32 T 11-10-2018 APT56_14180 c48625e7e4909497b02a8ec9861127c6 159 Pfam PF07080 Protein of unknown function (DUF1348) 12 141 1.3E-63 T 11-10-2018 IPR009783 Protein of unknown function DUF1348 APT56_14180 c48625e7e4909497b02a8ec9861127c6 159 Gene3D G3DSA:3.10.450.50 15 159 2.7E-75 T 11-10-2018 APT56_14180 c48625e7e4909497b02a8ec9861127c6 159 SUPERFAMILY SSF54427 7 159 3.8E-78 T 11-10-2018 IPR032710 NTF2-like domain superfamily APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 SUPERFAMILY SSF51735 6 254 9.36E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 PIRSF PIRSF000094 1 260 8.4E-114 T 11-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 Gene3D G3DSA:3.40.50.720 2 258 3.6E-57 T 11-10-2018 APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 3.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 3.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 3.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 3.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_03875 9c9086e5640469ba89ba91c6a48d7af6 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 2.0E-87 T 11-10-2018 APT56_03130 1888937bc3326340d27f469ca2a82772 571 Pfam PF03961 Flagellar Assembly Protein A 108 568 5.0E-113 T 11-10-2018 IPR005646 Flagellar assembly protein A APT56_08260 3e383616b45ba8c91f41ccab3628317c 200 Pfam PF11136 Protein of unknown function (DUF2889) 14 138 8.1E-45 T 11-10-2018 IPR021312 Protein of unknown function DUF2889 APT56_21235 caf5ed221c9f68e1cc5917b00d48be94 227 SUPERFAMILY SSF161098 3 215 2.09E-51 T 11-10-2018 IPR035906 MetI-like superfamily APT56_21235 caf5ed221c9f68e1cc5917b00d48be94 227 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 11 212 7.6E-71 T 11-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 APT56_21235 caf5ed221c9f68e1cc5917b00d48be94 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 215 9.9E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_21235 caf5ed221c9f68e1cc5917b00d48be94 227 Gene3D G3DSA:1.10.3720.10 1 217 4.1E-60 T 11-10-2018 IPR035906 MetI-like superfamily APT56_03940 5800638afd6fa5417d4ac06e056925ed 163 Pfam PF00583 Acetyltransferase (GNAT) family 28 133 6.8E-10 T 11-10-2018 IPR000182 GNAT domain APT56_03940 5800638afd6fa5417d4ac06e056925ed 163 SUPERFAMILY SSF55729 3 137 5.15E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APT56_03940 5800638afd6fa5417d4ac06e056925ed 163 Gene3D G3DSA:3.40.630.30 1 142 3.2E-18 T 11-10-2018 APT56_07515 2c09f113e3344b1785d6dfd6098a5489 391 Pfam PF07690 Major Facilitator Superfamily 10 319 4.3E-35 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_07515 2c09f113e3344b1785d6dfd6098a5489 391 Gene3D G3DSA:1.20.1250.20 4 378 1.8E-46 T 11-10-2018 APT56_07515 2c09f113e3344b1785d6dfd6098a5489 391 SUPERFAMILY SSF103473 4 381 5.75E-56 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_12030 55e7d516887fd436a90f93999a0b875c 419 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 416 1.3E-84 T 11-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 APT56_12030 55e7d516887fd436a90f93999a0b875c 419 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 140 1.6E-18 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 APT56_12030 55e7d516887fd436a90f93999a0b875c 419 Gene3D G3DSA:1.20.1330.10 267 366 1.2E-13 T 11-10-2018 APT56_12030 55e7d516887fd436a90f93999a0b875c 419 Gene3D G3DSA:1.20.1330.10 40 224 3.1E-43 T 11-10-2018 APT56_12030 55e7d516887fd436a90f93999a0b875c 419 SUPERFAMILY SSF64518 1 417 1.01E-65 T 11-10-2018 APT56_22515 bcaf3fce65b4a8f66f02c54c27dc9b73 374 Pfam PF04914 DltD protein 65 372 6.7E-42 T 11-10-2018 IPR006998 DltD APT56_00475 113fa2542b58ccc4ca4d51d4d2dd4adc 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 254 5.0E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_00475 113fa2542b58ccc4ca4d51d4d2dd4adc 266 SUPERFAMILY SSF161098 9 255 5.14E-57 T 11-10-2018 IPR035906 MetI-like superfamily APT56_00475 113fa2542b58ccc4ca4d51d4d2dd4adc 266 Gene3D G3DSA:1.10.3720.10 8 264 5.2E-55 T 11-10-2018 IPR035906 MetI-like superfamily APT56_01740 98bfef8d44c5353fe5b79f1c75a6ec68 143 Pfam PF10990 Protein of unknown function (DUF2809) 33 111 2.0E-16 T 11-10-2018 IPR021257 Protein of unknown function DUF2809 APT56_20855 7130ccc31c179d0e825057d928c77e44 141 SUPERFAMILY SSF82784 5 139 9.16E-38 T 11-10-2018 IPR036102 OsmC/Ohr superfamily APT56_20855 7130ccc31c179d0e825057d928c77e44 141 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 9 139 8.7E-45 T 11-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 APT56_20855 7130ccc31c179d0e825057d928c77e44 141 Pfam PF02566 OsmC-like protein 41 138 1.0E-15 T 11-10-2018 IPR003718 OsmC/Ohr family APT56_20855 7130ccc31c179d0e825057d928c77e44 141 Gene3D G3DSA:3.30.300.20 46 141 1.6E-30 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APT56_20855 7130ccc31c179d0e825057d928c77e44 141 Gene3D G3DSA:2.20.25.10 1 45 4.8E-17 T 11-10-2018 APT56_10945 f613edc1b5ebbcbd8381db2eff2af468 86 Gene3D G3DSA:3.40.50.720 1 55 1.4E-29 T 11-10-2018 APT56_10945 f613edc1b5ebbcbd8381db2eff2af468 86 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 1 52 6.8E-18 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APT56_10945 f613edc1b5ebbcbd8381db2eff2af468 86 Gene3D G3DSA:3.40.50.720 56 78 1.4E-29 T 11-10-2018 APT56_10945 f613edc1b5ebbcbd8381db2eff2af468 86 SUPERFAMILY SSF51735 1 53 3.35E-16 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_20805 73baef1ae615689e91be8898e7c83add 293 Pfam PF00892 EamA-like transporter family 148 276 5.5E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_20805 73baef1ae615689e91be8898e7c83add 293 Pfam PF00892 EamA-like transporter family 8 135 5.5E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_20805 73baef1ae615689e91be8898e7c83add 293 SUPERFAMILY SSF103481 182 277 8.24E-10 T 11-10-2018 APT56_20805 73baef1ae615689e91be8898e7c83add 293 SUPERFAMILY SSF103481 41 139 6.93E-12 T 11-10-2018 APT56_12195 548bd75b61e9921d46364e6eef12ac57 279 Pfam PF05036 Sporulation related domain 201 276 7.1E-18 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 APT56_12195 548bd75b61e9921d46364e6eef12ac57 279 SUPERFAMILY SSF110997 202 276 1.01E-14 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APT56_12195 548bd75b61e9921d46364e6eef12ac57 279 Gene3D G3DSA:3.30.70.1070 199 279 1.9E-11 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APT56_02250 9a601a3dfed41d7d5391fd3651cb41bd 301 SUPERFAMILY SSF53474 32 271 7.43E-18 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_02250 9a601a3dfed41d7d5391fd3651cb41bd 301 Gene3D G3DSA:3.40.50.1820 1 301 2.9E-102 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_25790 b75708799a99fcdc8bdb804f5e7a2b95 170 SMART SM00972 110 167 1.6E-16 T 11-10-2018 IPR007893 Spore coat protein U APT56_25790 b75708799a99fcdc8bdb804f5e7a2b95 170 Pfam PF05229 Spore Coat Protein U domain 18 167 1.4E-30 T 11-10-2018 IPR007893 Spore coat protein U APT56_23340 192a7eeb16c0946d964fbfffb651ed6f 141 Pfam PF13160 Protein of unknown function (DUF3995) 13 131 5.8E-31 T 11-10-2018 IPR025058 Protein of unknown function DUF3995 APT56_07015 1bc7396cb71e5f215261eece04dded7d 326 Gene3D G3DSA:3.60.20.30 193 326 5.5E-52 T 11-10-2018 APT56_07015 1bc7396cb71e5f215261eece04dded7d 326 SUPERFAMILY SSF56235 3 324 2.03E-100 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APT56_07015 1bc7396cb71e5f215261eece04dded7d 326 Pfam PF01112 Asparaginase 4 325 3.5E-122 T 11-10-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 APT56_09695 d8babd9ea96b10e23165423c4de80704 123 Pfam PF09842 Predicted membrane protein (DUF2069) 13 114 1.8E-35 T 11-10-2018 IPR018643 Protein of unknown function DUF2069, membrane APT56_20715 1ce8bf0af60ef9d5835bdbeea4608e04 431 Pfam PF01391 Collagen triple helix repeat (20 copies) 143 201 1.1E-7 T 11-10-2018 IPR008160 Collagen triple helix repeat APT56_09660 52fa20d104e5b652ece09bbcdb408bf3 281 Pfam PF00482 Type II secretion system (T2SS), protein F 114 238 4.0E-19 T 11-10-2018 IPR018076 Type II secretion system F domain APT56_09660 52fa20d104e5b652ece09bbcdb408bf3 281 Gene3D G3DSA:1.20.81.30 101 217 2.2E-11 T 11-10-2018 APT56_11465 1a1d98bf535e6893031ab6d4781f656e 261 Gene3D G3DSA:3.30.930.10 1 260 8.7E-48 T 11-10-2018 APT56_11465 1a1d98bf535e6893031ab6d4781f656e 261 SUPERFAMILY SSF55681 84 250 4.5E-11 T 11-10-2018 APT56_24355 2578dd5281dd2468883e32e45ed9e7c5 168 Pfam PF04608 Phosphatidylglycerophosphatase A 21 161 1.5E-46 T 11-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 APT56_24355 2578dd5281dd2468883e32e45ed9e7c5 168 PIRSF PIRSF006162 11 167 1.0E-38 T 11-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 APT56_24355 2578dd5281dd2468883e32e45ed9e7c5 168 SUPERFAMILY SSF101307 15 162 9.03E-35 T 11-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 APT56_16890 e610a35cc2126317906ddbcefc9379fb 282 SUPERFAMILY SSF53335 42 177 9.35E-13 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_16890 e610a35cc2126317906ddbcefc9379fb 282 Pfam PF13679 Methyltransferase domain 35 179 2.6E-44 T 11-10-2018 IPR025714 Methyltransferase domain APT56_16890 e610a35cc2126317906ddbcefc9379fb 282 Gene3D G3DSA:3.40.50.150 62 199 1.1E-6 T 11-10-2018 APT56_15605 13c02b93bfd95b4168733f43527676e0 239 SUPERFAMILY SSF53474 14 214 1.36E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_15605 13c02b93bfd95b4168733f43527676e0 239 Gene3D G3DSA:3.40.50.1820 12 218 3.9E-34 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_15605 13c02b93bfd95b4168733f43527676e0 239 Pfam PF02230 Phospholipase/Carboxylesterase 12 216 2.1E-31 T 11-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 APT56_23505 cbb79c0d58cd65480424f64b056528d3 229 SUPERFAMILY SSF56784 5 223 3.14E-52 T 11-10-2018 IPR036412 HAD-like superfamily APT56_23505 cbb79c0d58cd65480424f64b056528d3 229 Gene3D G3DSA:1.10.150.240 21 87 8.7E-58 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APT56_23505 cbb79c0d58cd65480424f64b056528d3 229 Gene3D G3DSA:3.40.50.1000 8 211 8.7E-58 T 11-10-2018 IPR023214 HAD superfamily APT56_23505 cbb79c0d58cd65480424f64b056528d3 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 189 2.0E-21 T 11-10-2018 APT56_23505 cbb79c0d58cd65480424f64b056528d3 229 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 96 190 3.2E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APT56_15935 7c738e6a41910f05bbe7b44766687294 287 Pfam PF01618 MotA/TolQ/ExbB proton channel family 102 221 2.7E-19 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APT56_02355 733e208edd42f4e8f5ecba4e755ab371 368 SUPERFAMILY SSF46894 300 367 3.16E-11 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APT56_02355 733e208edd42f4e8f5ecba4e755ab371 368 Gene3D G3DSA:1.10.10.10 207 368 1.3E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_02355 733e208edd42f4e8f5ecba4e755ab371 368 SMART SM00421 307 365 3.9E-4 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APT56_07160 6aa9aa497ca01a2a2753a9a02eb9723f 138 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 21 130 1.5E-26 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07160 6aa9aa497ca01a2a2753a9a02eb9723f 138 PIRSF PIRSF000178 20 135 6.4E-24 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07160 6aa9aa497ca01a2a2753a9a02eb9723f 138 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 23 131 8.5E-33 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07160 6aa9aa497ca01a2a2753a9a02eb9723f 138 Gene3D G3DSA:1.20.1300.10 3 135 6.3E-32 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_07160 6aa9aa497ca01a2a2753a9a02eb9723f 138 SUPERFAMILY SSF81343 7 134 3.92E-26 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APT56_14325 2571053c802d502767d39e9629d30c7b 113 Pfam PF05957 Bacterial protein of unknown function (DUF883) 33 112 6.5E-20 T 11-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 APT56_09300 45da50ad15a8238e975b4bc37cd26d57 171 Gene3D G3DSA:2.60.30.10 42 169 4.1E-60 T 11-10-2018 IPR036560 Methylamine/Aralkylamine dehydrogenase light chain superfamily GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 APT56_09300 45da50ad15a8238e975b4bc37cd26d57 171 Pfam PF02975 Methylamine dehydrogenase, L chain 56 165 2.9E-52 T 11-10-2018 IPR013504 Methylamine/Aralkylamine dehydrogenase light chain, C-terminal domain GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 APT56_09300 45da50ad15a8238e975b4bc37cd26d57 171 SUPERFAMILY SSF57561 52 167 7.85E-56 T 11-10-2018 IPR036560 Methylamine/Aralkylamine dehydrogenase light chain superfamily GO:0009308|GO:0016638|GO:0042597|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 APT56_09300 45da50ad15a8238e975b4bc37cd26d57 171 PIRSF PIRSF000192 2 168 6.8E-47 T 11-10-2018 IPR016008 Amine dehydrogenase light chain GO:0009308|GO:0030058|GO:0055114 KEGG: 00680+1.4.9.1|MetaCyc: PWY-6967 APT56_20250 f532b464c91c53dc349453cc29e7b226 214 SUPERFAMILY SSF48150 35 207 3.49E-43 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APT56_20250 f532b464c91c53dc349453cc29e7b226 214 Gene3D G3DSA:1.10.1670.40 19 205 8.4E-61 T 11-10-2018 APT56_20250 f532b464c91c53dc349453cc29e7b226 214 SMART SM00478 55 208 5.6E-16 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_20250 f532b464c91c53dc349453cc29e7b226 214 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 52 177 1.4E-10 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APT56_20250 f532b464c91c53dc349453cc29e7b226 214 Gene3D G3DSA:1.10.340.30 45 155 8.4E-61 T 11-10-2018 APT56_16670 dbe9a22d7b14bf7b3dc97f0aec667d38 218 SUPERFAMILY SSF52499 7 200 1.7E-48 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_16670 dbe9a22d7b14bf7b3dc97f0aec667d38 218 Gene3D G3DSA:3.40.50.850 8 208 2.2E-48 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_16670 dbe9a22d7b14bf7b3dc97f0aec667d38 218 Pfam PF00857 Isochorismatase family 16 166 8.9E-28 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_01415 a546c5a3bb9a6965b9a85bf5dad2f017 66 Pfam PF11137 Protein of unknown function (DUF2909) 1 60 1.5E-24 T 11-10-2018 IPR021313 Protein of unknown function DUF2909 APT56_24405 72cdf317c69b4ea2fed4d81dd4bb1510 274 SUPERFAMILY SSF161098 77 264 2.22E-34 T 11-10-2018 IPR035906 MetI-like superfamily APT56_24405 72cdf317c69b4ea2fed4d81dd4bb1510 274 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 24 273 3.3E-88 T 11-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 APT56_24405 72cdf317c69b4ea2fed4d81dd4bb1510 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 264 4.1E-13 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APT56_24405 72cdf317c69b4ea2fed4d81dd4bb1510 274 Gene3D G3DSA:1.10.3720.10 79 273 5.6E-28 T 11-10-2018 IPR035906 MetI-like superfamily APT56_18400 bcea5b4afd2322e60825c98123c7ef48 266 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 6 254 1.3E-119 T 11-10-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 APT56_18400 bcea5b4afd2322e60825c98123c7ef48 266 SUPERFAMILY SSF51621 3 257 1.11E-83 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_18400 bcea5b4afd2322e60825c98123c7ef48 266 Gene3D G3DSA:3.20.20.60 2 263 7.4E-94 T 11-10-2018 APT56_18400 bcea5b4afd2322e60825c98123c7ef48 266 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 243 5.9E-62 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 APT56_22160 a19974005b5e18d2dc6431f407802197 550 Gene3D G3DSA:3.90.1340.10 238 320 4.0E-8 T 11-10-2018 IPR037053 Phage tail collar domain superfamily APT56_22160 a19974005b5e18d2dc6431f407802197 550 SUPERFAMILY SSF88874 234 420 1.92E-15 T 11-10-2018 APT56_18150 b44c96bc731f5b4187e175bd8f9c60bf 362 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 318 8.0E-53 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_10350 bc8d9b023be9d1e0b1b1ca7b8f371d7f 333 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 329 5.9E-77 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_10350 bc8d9b023be9d1e0b1b1ca7b8f371d7f 333 SUPERFAMILY SSF53850 113 287 5.79E-8 T 11-10-2018 APT56_10350 bc8d9b023be9d1e0b1b1ca7b8f371d7f 333 PIRSF PIRSF017082 5 333 4.9E-78 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_10350 bc8d9b023be9d1e0b1b1ca7b8f371d7f 333 Gene3D G3DSA:3.40.190.10 134 257 8.5E-104 T 11-10-2018 APT56_10350 bc8d9b023be9d1e0b1b1ca7b8f371d7f 333 Gene3D G3DSA:3.40.190.150 36 322 8.5E-104 T 11-10-2018 APT56_01430 9b603f6e7be344527b922b9939fe50a3 344 Pfam PF02628 Cytochrome oxidase assembly protein 10 320 3.6E-80 T 11-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 APT56_24030 51d0f50784e197c7691592401c394d27 360 Pfam PF02353 Mycolic acid cyclopropane synthetase 80 343 2.0E-37 T 11-10-2018 APT56_24030 51d0f50784e197c7691592401c394d27 360 SUPERFAMILY SSF53335 83 359 1.12E-57 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APT56_24030 51d0f50784e197c7691592401c394d27 360 Gene3D G3DSA:3.40.50.150 70 354 2.5E-74 T 11-10-2018 APT56_11010 9817813956a463c53d73ec774516ba8b 170 Pfam PF03918 Cytochrome C biogenesis protein 13 140 1.6E-43 T 11-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family APT56_11010 9817813956a463c53d73ec774516ba8b 170 Gene3D G3DSA:1.10.8.640 28 109 9.1E-28 T 11-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily APT56_15155 4f7217c31639109834e0033a4e8691ce 202 Gene3D G3DSA:1.20.120.1490 65 177 4.3E-6 T 11-10-2018 APT56_21450 11764b8a442dbce8962765de81faa79c 625 Pfam PF02653 Branched-chain amino acid transport system / permease component 348 605 4.5E-28 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_21450 11764b8a442dbce8962765de81faa79c 625 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 290 7.8E-38 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_05665 72a8477fb0f985bdcf6509ad110ba294 423 Pfam PF04932 O-Antigen ligase 191 342 1.6E-20 T 11-10-2018 IPR007016 O-antigen ligase-related APT56_17630 361f578a056f9f0bd54deeb045abec85 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 320 1.4E-33 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_27055 29f668a5d41f8493aa67f2b6339d275b 267 SMART SM00460 158 220 8.7E-16 T 11-10-2018 IPR002931 Transglutaminase-like APT56_27055 29f668a5d41f8493aa67f2b6339d275b 267 Pfam PF01841 Transglutaminase-like superfamily 130 217 4.9E-23 T 11-10-2018 IPR002931 Transglutaminase-like APT56_27055 29f668a5d41f8493aa67f2b6339d275b 267 Gene3D G3DSA:3.10.620.30 88 254 1.2E-45 T 11-10-2018 APT56_27055 29f668a5d41f8493aa67f2b6339d275b 267 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 5 78 1.5E-20 T 11-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal APT56_27055 29f668a5d41f8493aa67f2b6339d275b 267 SUPERFAMILY SSF54001 7 246 4.12E-39 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APT56_13040 fa88443d4ccc6233ceb2f8c0f9054d68 236 Pfam PF03737 Aldolase/RraA 14 179 3.3E-33 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein APT56_13040 fa88443d4ccc6233ceb2f8c0f9054d68 236 SUPERFAMILY SSF89562 12 190 3.53E-43 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily APT56_13040 fa88443d4ccc6233ceb2f8c0f9054d68 236 Gene3D G3DSA:3.50.30.100 2 201 1.7E-52 T 11-10-2018 APT56_18105 8fda97d8a525b862bba3447ffd31b9cf 64 Pfam PF07869 Protein of unknown function (DUF1656) 4 58 1.4E-19 T 11-10-2018 IPR012451 Protein of unknown function DUF1656 APT56_18250 45582f0dd7d622d6784dd8f4dcf6e595 137 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 134 1.1E-25 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 APT56_18250 45582f0dd7d622d6784dd8f4dcf6e595 137 Gene3D G3DSA:3.30.420.270 59 131 6.2E-7 T 11-10-2018 APT56_03575 f8d32d3976cd1f6b5e313531015a06a4 516 Pfam PF04293 SpoVR like protein 25 455 3.6E-172 T 11-10-2018 IPR007390 Sporulation stage V, protein R APT56_03720 81afee4d0a540235aeb0ea2108e10f18 427 Pfam PF04888 Secretion system effector C (SseC) like family 87 420 1.5E-36 T 11-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 APT56_12805 fea9d200d13d4fafbf40783cade47a09 462 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 435 3.4E-38 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane APT56_23170 f817de233e38a01d017efbcf03d157e1 332 Pfam PF04773 FecR protein 122 217 9.3E-16 T 11-10-2018 IPR006860 FecR protein APT56_23170 f817de233e38a01d017efbcf03d157e1 332 Gene3D G3DSA:2.60.120.1440 114 244 1.3E-12 T 11-10-2018 APT56_23170 f817de233e38a01d017efbcf03d157e1 332 PIRSF PIRSF018266 15 328 1.6E-82 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component APT56_23170 f817de233e38a01d017efbcf03d157e1 332 Pfam PF16220 Domain of unknown function (DUF4880) 25 67 1.3E-11 T 11-10-2018 IPR032623 FecR, N-terminal APT56_16190 90ccd3da81065c601bd85a2ad36059d7 259 Pfam PF11745 Protein of unknown function (DUF3304) 15 136 1.7E-15 T 11-10-2018 IPR021733 Protein of unknown function DUF3304 APT56_18535 5caaec080eb8c15f9d1d2ae51bf9a23b 390 Pfam PF13000 Acetyl-coenzyme A transporter 1 4 143 6.5E-18 T 11-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 APT56_18535 5caaec080eb8c15f9d1d2ae51bf9a23b 390 TIGRFAM TIGR02718 sider_RhtX_FptX: siderophore transporter, RhtX/FptX family 2 380 4.0E-131 T 11-10-2018 IPR014090 Siderophore transporter, RhtX/FptX family APT56_18535 5caaec080eb8c15f9d1d2ae51bf9a23b 390 SUPERFAMILY SSF103473 2 388 4.05E-22 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_18535 5caaec080eb8c15f9d1d2ae51bf9a23b 390 Gene3D G3DSA:1.20.1250.20 1 387 1.7E-19 T 11-10-2018 APT56_15095 035985ad29c91e269c030862ed9d6967 219 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 43 203 1.2E-25 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain APT56_15095 035985ad29c91e269c030862ed9d6967 219 Gene3D G3DSA:3.40.50.1110 39 219 1.3E-68 T 11-10-2018 IPR036514 SGNH hydrolase superfamily APT56_15095 035985ad29c91e269c030862ed9d6967 219 SUPERFAMILY SSF52266 38 218 6.11E-50 T 11-10-2018 APT56_15695 904d79e73854a7e1f6ed2dc1c861a9a1 273 SMART SM00062 35 257 1.4E-58 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_15695 904d79e73854a7e1f6ed2dc1c861a9a1 273 SUPERFAMILY SSF53850 1 256 3.83E-58 T 11-10-2018 APT56_15695 904d79e73854a7e1f6ed2dc1c861a9a1 273 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 255 9.2E-55 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APT56_15695 904d79e73854a7e1f6ed2dc1c861a9a1 273 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APT56_15695 904d79e73854a7e1f6ed2dc1c861a9a1 273 Gene3D G3DSA:3.40.190.10 123 214 2.4E-59 T 11-10-2018 APT56_15695 904d79e73854a7e1f6ed2dc1c861a9a1 273 Gene3D G3DSA:3.40.190.10 25 259 2.4E-59 T 11-10-2018 APT56_05445 28365ae0eff362c22912f7a85025778f 193 Pfam PF09361 Phasin protein 7 105 1.4E-24 T 11-10-2018 IPR018968 Phasin APT56_05445 28365ae0eff362c22912f7a85025778f 193 TIGRFAM TIGR01841 phasin: phasin family protein 27 112 1.2E-22 T 11-10-2018 IPR010127 Phasin, subfamily 1 APT56_25285 5e191a77eca5ebe35dc89836449f2c70 344 Gene3D G3DSA:3.40.50.720 15 334 6.1E-72 T 11-10-2018 APT56_25285 5e191a77eca5ebe35dc89836449f2c70 344 Pfam PF01370 NAD dependent epimerase/dehydratase family 17 255 7.9E-45 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APT56_25285 5e191a77eca5ebe35dc89836449f2c70 344 SUPERFAMILY SSF51735 12 336 4.59E-71 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_03660 2f77e9ab829e296eb38fa16f6ce22ea8 441 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 277 434 2.3E-8 T 11-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain APT56_03660 2f77e9ab829e296eb38fa16f6ce22ea8 441 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 6 441 1.9E-60 T 11-10-2018 IPR012843 Type III secretion system YscD/HrpQ APT56_03660 2f77e9ab829e296eb38fa16f6ce22ea8 441 Gene3D G3DSA:2.60.200.20 2 82 1.4E-6 T 11-10-2018 APT56_06960 61521cc6c6ff7b083ac3688a81f25722 282 SUPERFAMILY SSF103481 31 127 1.96E-14 T 11-10-2018 APT56_06960 61521cc6c6ff7b083ac3688a81f25722 282 SUPERFAMILY SSF103481 173 275 3.66E-16 T 11-10-2018 APT56_06960 61521cc6c6ff7b083ac3688a81f25722 282 Pfam PF00892 EamA-like transporter family 3 126 1.5E-21 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_06960 61521cc6c6ff7b083ac3688a81f25722 282 Pfam PF00892 EamA-like transporter family 137 273 5.6E-27 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APT56_15985 45c3d0c900aba80904c24e18e58caff9 402 SUPERFAMILY SSF103473 13 396 9.81E-46 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_15985 45c3d0c900aba80904c24e18e58caff9 402 Gene3D G3DSA:1.20.1250.20 14 198 1.1E-19 T 11-10-2018 APT56_15985 45c3d0c900aba80904c24e18e58caff9 402 Gene3D G3DSA:1.20.1250.20 218 397 4.9E-20 T 11-10-2018 APT56_15985 45c3d0c900aba80904c24e18e58caff9 402 Pfam PF07690 Major Facilitator Superfamily 27 340 9.6E-28 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_27835 ca9a02868754c54e11a3c32af932a6a3 98 SUPERFAMILY SSF54189 2 92 3.31E-30 T 11-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 APT56_27835 ca9a02868754c54e11a3c32af932a6a3 98 Pfam PF00276 Ribosomal protein L23 8 94 1.8E-30 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 APT56_27835 ca9a02868754c54e11a3c32af932a6a3 98 Gene3D G3DSA:3.30.70.330 1 97 7.5E-33 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily APT56_27835 ca9a02868754c54e11a3c32af932a6a3 98 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 22.008 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 APT56_07130 3002253a3120b27e7f24024306a71a0a 140 PIRSF PIRSF004638 1 140 5.6E-51 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 APT56_07130 3002253a3120b27e7f24024306a71a0a 140 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 140 1.7E-46 T 11-10-2018 IPR005265 Uncharacterised protein family UPF0093 APT56_16290 583fd153638ac0e3691e87833c33d5f6 160 Gene3D G3DSA:3.40.1490.10 24 159 1.2E-14 T 11-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 APT56_16290 583fd153638ac0e3691e87833c33d5f6 160 SUPERFAMILY SSF102462 26 160 2.67E-27 T 11-10-2018 IPR023476 Peptidyl-tRNA hydrolase II domain superfamily MetaCyc: PWY-6308 APT56_16290 583fd153638ac0e3691e87833c33d5f6 160 Pfam PF09391 Protein of unknown function (DUF2000) 26 160 1.6E-33 T 11-10-2018 IPR018988 Protein of unknown function DUF2000 APT56_11115 caeb547982db561ed32cf4c9b28630e9 294 SUPERFAMILY SSF52096 25 266 1.93E-32 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_11115 caeb547982db561ed32cf4c9b28630e9 294 Pfam PF00378 Enoyl-CoA hydratase/isomerase 111 207 2.0E-14 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APT56_11115 caeb547982db561ed32cf4c9b28630e9 294 Gene3D G3DSA:3.90.226.10 3 226 3.0E-81 T 11-10-2018 APT56_06585 259739b38f180da329fd0d2cf8ba2ab2 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 330 1.9E-21 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_01135 e53eb11d71d74370a7213fcd64ee836f 284 Pfam PF02167 Cytochrome C1 family 35 282 4.0E-19 T 11-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 APT56_01135 e53eb11d71d74370a7213fcd64ee836f 284 SUPERFAMILY SSF46626 20 248 1.45E-47 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_01135 e53eb11d71d74370a7213fcd64ee836f 284 Gene3D G3DSA:1.10.760.10 25 207 4.7E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APT56_06380 a5da30744c9ea3c4b900f1ece4aa1ebb 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.3E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06380 a5da30744c9ea3c4b900f1ece4aa1ebb 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.3E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06380 a5da30744c9ea3c4b900f1ece4aa1ebb 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 8.4E-14 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_06380 a5da30744c9ea3c4b900f1ece4aa1ebb 204 SUPERFAMILY SSF46689 12 83 5.34E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_06380 a5da30744c9ea3c4b900f1ece4aa1ebb 204 Gene3D G3DSA:1.10.357.10 6 203 1.8E-26 T 11-10-2018 APT56_05180 62da6899b0dcc7952a4fb4e0a222ba07 272 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 35 264 2.7E-73 T 11-10-2018 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 APT56_05180 62da6899b0dcc7952a4fb4e0a222ba07 272 SUPERFAMILY SSF110710 8 266 1.73E-81 T 11-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like APT56_12165 7d8432660a1278cee2a479956e12ead8 245 Gene3D G3DSA:3.30.450.40 79 245 2.2E-33 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_12165 7d8432660a1278cee2a479956e12ead8 245 Pfam PF09339 IclR helix-turn-helix domain 7 54 2.1E-7 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APT56_12165 7d8432660a1278cee2a479956e12ead8 245 Pfam PF01614 Bacterial transcriptional regulator 128 239 1.1E-17 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APT56_12165 7d8432660a1278cee2a479956e12ead8 245 Gene3D G3DSA:1.10.10.10 1 76 2.0E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_12165 7d8432660a1278cee2a479956e12ead8 245 SUPERFAMILY SSF46785 3 75 1.95E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_12165 7d8432660a1278cee2a479956e12ead8 245 SUPERFAMILY SSF55781 77 243 3.34E-35 T 11-10-2018 APT56_20830 acb7297d1e4375fb6c71bbb9d14c9072 420 Pfam PF02040 Arsenical pump membrane protein 16 415 8.1E-26 T 11-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 APT56_20830 acb7297d1e4375fb6c71bbb9d14c9072 420 PRINTS PR00758 Arsenical pump membrane protein signature 276 300 6.3E-16 T 11-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 APT56_20830 acb7297d1e4375fb6c71bbb9d14c9072 420 PRINTS PR00758 Arsenical pump membrane protein signature 107 131 6.3E-16 T 11-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 APT56_20830 acb7297d1e4375fb6c71bbb9d14c9072 420 PRINTS PR00758 Arsenical pump membrane protein signature 358 383 6.3E-16 T 11-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 APT56_26750 ca3e0d435d025513141e34efa9d9785b 499 Pfam PF00939 Sodium:sulfate symporter transmembrane region 24 499 6.5E-126 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APT56_26750 ca3e0d435d025513141e34efa9d9785b 499 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 38 493 1.6E-70 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APT56_26750 ca3e0d435d025513141e34efa9d9785b 499 PIRSF PIRSF002457 5 499 2.8E-130 T 11-10-2018 IPR030676 Citrate carrier CitT-related APT56_21665 3bcdf7d491d69f4800f721369ca20ef5 74 Gene3D G3DSA:2.30.30.320 3 74 1.9E-15 T 11-10-2018 IPR037135 DUF1653-like domain superfamily APT56_21665 3bcdf7d491d69f4800f721369ca20ef5 74 Pfam PF07866 Protein of unknown function (DUF1653) 11 68 2.7E-19 T 11-10-2018 IPR023387 DUF1653-like domain APT56_27195 8be772a25682386a2192a5f8cb44e9aa 383 Pfam PF03824 High-affinity nickel-transport protein 85 379 5.1E-58 T 11-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 APT56_19060 a63930eefd1df672d98ec9eafbb20b57 131 Pfam PF13767 Domain of unknown function (DUF4168) 44 119 4.8E-18 T 11-10-2018 IPR025433 Domain of unknown function DUF4168 APT56_08865 299591f5c2f7b06cda31fef3730023d7 176 Pfam PF02627 Carboxymuconolactone decarboxylase family 42 102 2.8E-10 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APT56_08865 299591f5c2f7b06cda31fef3730023d7 176 Gene3D G3DSA:1.20.1290.10 35 174 4.3E-42 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_08865 299591f5c2f7b06cda31fef3730023d7 176 SUPERFAMILY SSF69118 14 174 1.01E-37 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APT56_25970 884058bf2cd4a23206e09a55123acb8a 98 Gene3D G3DSA:3.30.70.1060 1 95 8.5E-26 T 11-10-2018 APT56_25970 884058bf2cd4a23206e09a55123acb8a 98 Pfam PF03795 YCII-related domain 1 88 2.3E-19 T 11-10-2018 IPR005545 YCII-related APT56_25970 884058bf2cd4a23206e09a55123acb8a 98 SUPERFAMILY SSF54909 1 90 5.36E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_26460 628a130bd8b087cf51316f86ff85a614 203 Pfam PF14334 Domain of unknown function (DUF4390) 39 191 3.4E-49 T 11-10-2018 IPR025500 Protein of unknown function DUF4390 APT56_08185 fc2cec4f1270fc6eb8ba1b093ec37fb0 43 Pfam PF08085 Entericidin EcnA/B family 21 41 9.7E-10 T 11-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 APT56_16725 fdefe5266f4a158eaaea5f1ebf96fb6d 206 Pfam PF09998 Uncharacterized protein conserved in bacteria (DUF2239) 8 200 3.9E-80 T 11-10-2018 IPR018715 Protein of unknown function DUF2239 APT56_17320 c4181cf9a86159767e9e97c91de7e623 182 Pfam PF13238 AAA domain 5 112 5.4E-8 T 11-10-2018 APT56_17320 c4181cf9a86159767e9e97c91de7e623 182 Gene3D G3DSA:3.40.50.300 1 181 1.0E-13 T 11-10-2018 APT56_17320 c4181cf9a86159767e9e97c91de7e623 182 SUPERFAMILY SSF52540 4 179 4.02E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_03590 428b9de3a6a8cdf60bc97bccb0df43f0 126 Pfam PF14552 Tautomerase enzyme 38 119 1.4E-30 T 11-10-2018 IPR037479 Tautomerase, MSAD family APT56_03590 428b9de3a6a8cdf60bc97bccb0df43f0 126 Gene3D G3DSA:3.30.429.10 2 126 5.3E-45 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_03590 428b9de3a6a8cdf60bc97bccb0df43f0 126 SUPERFAMILY SSF55331 2 125 4.42E-41 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily APT56_16155 db2f419f8c996d3d89e43012584e799f 448 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 6 447 1.3E-141 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 APT56_16155 db2f419f8c996d3d89e43012584e799f 448 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 446 6.8E-139 T 11-10-2018 IPR010263 Type VI secretion protein, VC_A0114 APT56_03595 1a680a65289f6600e15b082ff9f8b368 218 Pfam PF03407 Nucleotide-diphospho-sugar transferase 63 157 2.3E-8 T 11-10-2018 IPR005069 Nucleotide-diphospho-sugar transferase APT56_17160 d35f59cce890fbc6220f351120180ab8 483 Gene3D G3DSA:1.10.4160.10 3 460 4.3E-104 T 11-10-2018 IPR038271 Purine-cytosine permease superfamily APT56_17160 d35f59cce890fbc6220f351120180ab8 483 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 17 443 1.0E-73 T 11-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 APT56_16045 aefd189d80180a53fdfeed483f30e3cf 474 SUPERFAMILY SSF89796 30 206 3.4E-22 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_16045 aefd189d80180a53fdfeed483f30e3cf 474 SUPERFAMILY SSF89796 212 466 8.63E-56 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_16045 aefd189d80180a53fdfeed483f30e3cf 474 Pfam PF02515 CoA-transferase family III 215 406 4.8E-45 T 11-10-2018 IPR003673 CoA-transferase family III GO:0003824 APT56_16045 aefd189d80180a53fdfeed483f30e3cf 474 Gene3D G3DSA:3.40.50.10540 209 469 6.9E-57 T 11-10-2018 IPR023606 CoA-transferase family III domain superfamily APT56_19230 b8dbedd4df49f1165a147b99eb6f3afc 318 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 42 313 3.1E-84 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_19230 b8dbedd4df49f1165a147b99eb6f3afc 318 Gene3D G3DSA:3.40.190.10 120 243 2.2E-107 T 11-10-2018 APT56_19230 b8dbedd4df49f1165a147b99eb6f3afc 318 SUPERFAMILY SSF53850 109 279 1.09E-13 T 11-10-2018 APT56_19230 b8dbedd4df49f1165a147b99eb6f3afc 318 Gene3D G3DSA:3.40.190.150 23 308 2.2E-107 T 11-10-2018 APT56_19230 b8dbedd4df49f1165a147b99eb6f3afc 318 PIRSF PIRSF017082 1 318 5.4E-80 T 11-10-2018 IPR005064 Bordetella uptake gene GO:0030288 APT56_06570 0432520ca1f8ca7d4eefb0a8be79dc20 198 Pfam PF02361 Cobalt transport protein 13 196 4.7E-15 T 11-10-2018 IPR003339 ABC/ECF transporter, transmembrane component APT56_02145 57087885e95afb4575ddb980a0389169 137 Pfam PF03899 ATP synthase I chain 28 121 1.1E-9 T 11-10-2018 IPR005598 ATP synthase protein I APT56_21530 213408792ccecf6312ff6c07d09e4030 467 Gene3D G3DSA:3.90.1300.10 2 465 2.3E-110 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_21530 213408792ccecf6312ff6c07d09e4030 467 SUPERFAMILY SSF75304 3 455 1.83E-109 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_21530 213408792ccecf6312ff6c07d09e4030 467 ProSitePatterns PS00571 Amidases signature. 153 184 - T 11-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 APT56_21530 213408792ccecf6312ff6c07d09e4030 467 Pfam PF01425 Amidase 25 446 4.8E-77 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 APT56_07985 623451d585193c02ab6bde5079a2365c 293 Gene3D G3DSA:3.30.2010.10 74 164 8.6E-31 T 11-10-2018 APT56_07985 623451d585193c02ab6bde5079a2365c 293 Hamap MF_00188 Protease HtpX [htpX]. 1 290 24.483 T 11-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 APT56_07985 623451d585193c02ab6bde5079a2365c 293 Pfam PF01435 Peptidase family M48 81 289 2.1E-38 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APT56_09060 b3d6946201d6a954c72f9bce1a61aec1 299 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 69 222 1.4E-51 T 11-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 APT56_09060 b3d6946201d6a954c72f9bce1a61aec1 299 SUPERFAMILY SSF51197 101 225 3.84E-19 T 11-10-2018 APT56_09060 b3d6946201d6a954c72f9bce1a61aec1 299 Gene3D G3DSA:2.60.120.330 45 225 2.0E-43 T 11-10-2018 IPR027443 Isopenicillin N synthase-like APT56_22110 57bdf3d5d5e52ea5425b49900cb33d45 129 Pfam PF13467 Ribbon-helix-helix domain 16 82 4.8E-26 T 11-10-2018 IPR027373 Ribbon-helix-helix domain APT56_22110 57bdf3d5d5e52ea5425b49900cb33d45 129 Gene3D G3DSA:1.10.3990.20 8 116 6.1E-46 T 11-10-2018 IPR038268 Ribbon-helix-helix domain superfamily APT56_06435 1ff90759ab9fddc8f971e443ff70bbb0 213 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 19 162 4.2E-32 T 11-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06435 1ff90759ab9fddc8f971e443ff70bbb0 213 Gene3D G3DSA:1.20.120.1200 4 164 6.1E-40 T 11-10-2018 APT56_06165 bc9d8418899edd6b72eeb8725365bbd0 446 Pfam PF03600 Citrate transporter 14 387 4.9E-52 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 APT56_06165 bc9d8418899edd6b72eeb8725365bbd0 446 TIGRFAM TIGR00784 citMHS: citrate transporter 2 438 1.6E-187 T 11-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 APT56_14095 f09ddd77d7b9fbee2717a2d07feeecbb 368 Pfam PF01594 AI-2E family transporter 17 347 6.8E-33 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like APT56_14575 b1277ead768c7fb6af83e97cb6f735c9 136 Pfam PF07007 Lysozyme inhibitor LprI 42 106 4.8E-5 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal APT56_14465 35c092c0486f45c185270d77366ba448 719 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 46 282 4.2E-11 T 11-10-2018 IPR018712 Domain of unknown function DUF2235 APT56_14465 35c092c0486f45c185270d77366ba448 719 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 305 417 7.0E-18 T 11-10-2018 IPR018712 Domain of unknown function DUF2235 APT56_09290 fb3f60606a7734a6e20ecddeef24502c 185 Pfam PF07291 Methylamine utilisation protein MauE 2 173 1.4E-15 T 11-10-2018 IPR009908 Methylamine utilisation protein, MauE GO:0016021|GO:0030416 APT56_12225 bfc4a5479cdf97405d4bd5dae9d596ad 237 Pfam PF01914 MarC family integral membrane protein 13 220 2.2E-35 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APT56_12225 bfc4a5479cdf97405d4bd5dae9d596ad 237 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 14 216 7.5E-33 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APT56_16235 04e21e07e94c48ca5632e375319e57d0 369 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 3 360 2.6E-119 T 11-10-2018 IPR017740 Type VI secretion system-associated, ImpA APT56_16235 04e21e07e94c48ca5632e375319e57d0 369 Pfam PF06812 ImpA, N-terminal, type VI secretion system 8 130 2.6E-39 T 11-10-2018 IPR010657 ImpA, N-terminal APT56_08785 cad659e0b5f27d009bc05afbe87adf8b 326 Pfam PF01618 MotA/TolQ/ExbB proton channel family 167 284 3.7E-34 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APT56_14975 cbe237536927facbf53f2d30f7318430 166 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 154 1.2E-23 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_13545 c9d03a8516a55a5bd306cdf02d729b37 213 Pfam PF05425 Copper resistance protein D 108 207 1.2E-19 T 11-10-2018 IPR008457 Copper resistance protein D GO:0016021 APT56_06455 ca2c75a3921f3a1822432f204f0da360 494 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 10 478 1.2E-139 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 APT56_06455 ca2c75a3921f3a1822432f204f0da360 494 Pfam PF00361 Proton-conducting membrane transporter 127 429 1.2E-74 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_06455 ca2c75a3921f3a1822432f204f0da360 494 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 481 18.359 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 APT56_06455 ca2c75a3921f3a1822432f204f0da360 494 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 310 322 5.9E-5 T 11-10-2018 APT56_06455 ca2c75a3921f3a1822432f204f0da360 494 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 218 239 5.9E-5 T 11-10-2018 APT56_06455 ca2c75a3921f3a1822432f204f0da360 494 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 423 442 5.9E-5 T 11-10-2018 APT56_06455 ca2c75a3921f3a1822432f204f0da360 494 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 74 99 5.9E-5 T 11-10-2018 APT56_26920 d1bc45b73d0393983a0a76cbd6f749b8 145 Pfam PF04143 Sulphur transport 45 131 3.3E-7 T 11-10-2018 IPR007272 Sulphur transport domain APT56_19745 47b21c35c8b42f44afe2b38e59c67ed0 148 Pfam PF12266 Protein of unknown function (DUF3613) 79 141 7.5E-11 T 11-10-2018 IPR022053 Protein of unknown function DUF3613 APT56_09700 46be51fa59bf09c474f602e58c2d77f3 495 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 7 481 43.68 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 APT56_09700 46be51fa59bf09c474f602e58c2d77f3 495 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 9 463 1.2E-133 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 APT56_23595 91af0889386076bda7b5e338f471ae01 237 SUPERFAMILY SSF53474 3 227 1.22E-20 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_23595 91af0889386076bda7b5e338f471ae01 237 Gene3D G3DSA:3.40.50.1820 2 227 2.2E-21 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_23595 91af0889386076bda7b5e338f471ae01 237 Pfam PF12146 Serine aminopeptidase, S33 51 194 2.8E-8 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 APT56_06460 698292b7cb02a88e4b3ee7e60baaf969 109 Pfam PF10993 Protein of unknown function (DUF2818) 6 102 1.0E-34 T 11-10-2018 IPR016768 Uncharacterised conserved protein UCP019883, membrane APT56_06460 698292b7cb02a88e4b3ee7e60baaf969 109 PIRSF PIRSF019883 1 106 2.6E-43 T 11-10-2018 IPR016768 Uncharacterised conserved protein UCP019883, membrane APT56_10140 3c6e85ceff1a35b31fe1ca5a2c8d0fc3 157 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 1 102 3.2E-41 T 11-10-2018 IPR018738 Protein of unknown function DUF2280 APT56_22550 9d890950ba27c0ba4528a87e1d41ed28 109 Gene3D G3DSA:2.60.120.10 5 109 1.2E-6 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_22550 9d890950ba27c0ba4528a87e1d41ed28 109 SUPERFAMILY SSF51182 30 91 8.46E-10 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_10480 4ddf8e1329e3659c63f301145d3d45ec 391 Pfam PF03929 PepSY-associated TM region 13 365 4.3E-61 T 11-10-2018 IPR005625 PepSY-associated TM protein APT56_24460 91183ed0fa5feea1a3e0abd515deb90c 165 Pfam PF11158 Protein of unknown function (DUF2938) 10 158 2.8E-65 T 11-10-2018 IPR021329 Protein of unknown function DUF2938 APT56_24040 35ac2de79b8350d20dd1f2853a57eefe 170 Pfam PF11086 Protein of unknown function (DUF2878) 4 156 2.7E-41 T 11-10-2018 IPR021306 Protein of unknown function DUF2878 APT56_03730 7eed5ab34be01583acf6b2b4b9cceb9d 149 Gene3D G3DSA:1.25.40.10 10 146 2.4E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_03730 7eed5ab34be01583acf6b2b4b9cceb9d 149 SUPERFAMILY SSF48452 19 144 8.26E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APT56_27185 602bc16ed1e6684bc32e982e05d9f99a 225 SUPERFAMILY SSF55781 84 217 1.28E-6 T 11-10-2018 APT56_27185 602bc16ed1e6684bc32e982e05d9f99a 225 Pfam PF04340 Protein of unknown function, DUF484 2 217 1.4E-29 T 11-10-2018 IPR007435 Protein of unknown function DUF484 APT56_27185 602bc16ed1e6684bc32e982e05d9f99a 225 Gene3D G3DSA:3.30.450.40 41 221 1.6E-44 T 11-10-2018 IPR029016 GAF-like domain superfamily APT56_22940 f6a38b75e867c76a77a19e6642f18a81 229 Pfam PF07077 Protein of unknown function (DUF1345) 54 220 3.0E-53 T 11-10-2018 IPR009781 Protein of unknown function DUF1345 APT56_20740 075688d8e96fbfe99ecd9d1cfe18f526 71 SUPERFAMILY SSF52743 1 50 1.11E-6 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 APT56_20740 075688d8e96fbfe99ecd9d1cfe18f526 71 Gene3D G3DSA:3.40.50.200 1 69 2.0E-5 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 APT56_13955 291da795e20cd97376478f8abc628f99 157 Pfam PF10027 Predicted integral membrane protein (DUF2269) 6 155 7.0E-60 T 11-10-2018 IPR018729 Protein of unknown function DUF2269, transmembrane APT56_19620 39290db62bc5d24a5b0ef18b7f9066af 285 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 20 264 6.3E-42 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APT56_19620 39290db62bc5d24a5b0ef18b7f9066af 285 SUPERFAMILY SSF52518 10 278 6.57E-76 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APT56_19620 39290db62bc5d24a5b0ef18b7f9066af 285 Gene3D G3DSA:3.40.50.970 7 284 1.8E-88 T 11-10-2018 APT56_06765 4cb49281e4646d8f32229863b3988c4d 215 Pfam PF02620 Uncharacterized ACR, COG1399 78 212 6.0E-16 T 11-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD APT56_20645 f05ba74ebf82e4e90cc223dafd065f00 211 Pfam PF06551 Protein of unknown function (DUF1120) 29 86 1.2E-9 T 11-10-2018 IPR010546 Protein of unknown function DUF1120 APT56_20645 f05ba74ebf82e4e90cc223dafd065f00 211 SUPERFAMILY SSF110296 130 169 8.37E-5 T 11-10-2018 APT56_13190 89fbce7645b5a0ec5ff692f729cfe5d7 115 Gene3D G3DSA:3.10.180.10 9 115 7.2E-14 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_13190 89fbce7645b5a0ec5ff692f729cfe5d7 115 SUPERFAMILY SSF54593 12 114 4.51E-15 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APT56_10105 8ebc4a698e45f45ea0a19f3e45611c4f 132 Gene3D G3DSA:1.10.260.40 1 61 2.4E-6 T 11-10-2018 APT56_00505 1693c6a039e92f9fa9489a05b9a8f37e 567 Pfam PF17287 POTRA domain 148 200 5.5E-11 T 11-10-2018 IPR035251 ShlB, POTRA domain APT56_00505 1693c6a039e92f9fa9489a05b9a8f37e 567 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 205 523 3.3E-87 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal APT56_00505 1693c6a039e92f9fa9489a05b9a8f37e 567 Gene3D G3DSA:2.40.160.50 178 567 2.1E-78 T 11-10-2018 APT56_00505 1693c6a039e92f9fa9489a05b9a8f37e 567 PIRSF PIRSF029745 1 567 6.0E-112 T 11-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 APT56_00505 1693c6a039e92f9fa9489a05b9a8f37e 567 Pfam PF08479 POTRA domain, ShlB-type 74 147 6.4E-12 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type APT56_14105 486f3304fc899207e3306e8ebca3e84e 119 Gene3D G3DSA:1.10.890.40 43 119 1.2E-23 T 11-10-2018 APT56_26890 f3fdf33b43b11d11f157c6e8660c5db2 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 295 1.4E-29 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_23780 6014ecffcecc16982fec67959eef937a 300 Gene3D G3DSA:3.40.190.10 93 291 8.8E-62 T 11-10-2018 APT56_23780 6014ecffcecc16982fec67959eef937a 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.1E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APT56_23780 6014ecffcecc16982fec67959eef937a 300 Gene3D G3DSA:1.10.10.10 3 90 1.2E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_23780 6014ecffcecc16982fec67959eef937a 300 SUPERFAMILY SSF53850 90 296 1.61E-40 T 11-10-2018 APT56_23780 6014ecffcecc16982fec67959eef937a 300 SUPERFAMILY SSF46785 4 112 7.39E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_23780 6014ecffcecc16982fec67959eef937a 300 Gene3D G3DSA:3.40.190.10 164 264 8.8E-62 T 11-10-2018 APT56_23780 6014ecffcecc16982fec67959eef937a 300 Pfam PF03466 LysR substrate binding domain 89 293 3.1E-39 T 11-10-2018 IPR005119 LysR, substrate-binding APT56_18015 16ba3e642775cf40a4235c41baa7ccd9 309 Pfam PF06675 Protein of unknown function (DUF1177) 41 302 1.6E-114 T 11-10-2018 IPR009561 Protein of unknown function DUF1177 APT56_05555 3f47864b4ee23c06aad7cfa092d3626f 139 Gene3D G3DSA:1.10.10.10 1 83 2.0E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APT56_05555 3f47864b4ee23c06aad7cfa092d3626f 139 SUPERFAMILY SSF46785 5 133 7.32E-43 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APT56_05555 3f47864b4ee23c06aad7cfa092d3626f 139 Gene3D G3DSA:3.30.1490.190 85 138 4.6E-26 T 11-10-2018 APT56_05555 3f47864b4ee23c06aad7cfa092d3626f 139 Pfam PF01475 Ferric uptake regulator family 10 129 5.4E-47 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 APT56_02880 8e5e0b373a4c31fe63dd15b34097d234 62 Pfam PF11943 Protein of unknown function (DUF3460) 4 60 2.3E-28 T 11-10-2018 IPR021853 Protein of unknown function DUF3460 APT56_10980 67c4e58cf4a0916978abc30733390fe3 293 SUPERFAMILY SSF53474 17 284 2.61E-18 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_10980 67c4e58cf4a0916978abc30733390fe3 293 Gene3D G3DSA:3.40.50.1820 7 292 7.4E-54 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_14205 f57a82b4a2e4103778453777a9922d29 157 Pfam PF04657 Putative inner membrane exporter, YdcZ 11 146 1.0E-36 T 11-10-2018 IPR006750 Putative inner membrane exporter, YdcZ APT56_15280 8b9991d895cafbee872c4b510b6ddabe 543 Pfam PF00361 Proton-conducting membrane transporter 137 437 2.4E-34 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_01260 23075e9ffa4a9fd3d1a6ace896c36e90 267 PRINTS PR01805 VacJ lipoprotein signature 49 65 1.3E-26 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APT56_01260 23075e9ffa4a9fd3d1a6ace896c36e90 267 PRINTS PR01805 VacJ lipoprotein signature 136 153 1.3E-26 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APT56_01260 23075e9ffa4a9fd3d1a6ace896c36e90 267 PRINTS PR01805 VacJ lipoprotein signature 32 45 1.3E-26 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APT56_01260 23075e9ffa4a9fd3d1a6ace896c36e90 267 PRINTS PR01805 VacJ lipoprotein signature 100 117 1.3E-26 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APT56_01260 23075e9ffa4a9fd3d1a6ace896c36e90 267 Pfam PF04333 MlaA lipoprotein 31 227 6.2E-72 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APT56_06815 d57ac46e920b2f05ded6f86ab314b4f3 169 SUPERFAMILY SSF89069 16 79 3.53E-13 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 APT56_06815 d57ac46e920b2f05ded6f86ab314b4f3 169 Gene3D G3DSA:1.10.10.880 16 79 3.2E-11 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 APT56_06815 d57ac46e920b2f05ded6f86ab314b4f3 169 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 17 80 4.2E-12 T 11-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 APT56_18985 61d206cab6a877750fcaa2e85cd0b3de 271 Pfam PF01925 Sulfite exporter TauE/SafE 6 268 2.8E-38 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_16140 2aef9828f6d50e49e179acf715dfe7a0 174 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 164 2.2E-60 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 APT56_16140 2aef9828f6d50e49e179acf715dfe7a0 174 PIRSF PIRSF028301 2 174 6.1E-66 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 APT56_16140 2aef9828f6d50e49e179acf715dfe7a0 174 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 166 1.5E-58 T 11-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 APT56_01360 c47b1bbd084f59028fc0bbbd08d9382a 272 SUPERFAMILY SSF143422 35 107 9.42E-5 T 11-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 APT56_01360 c47b1bbd084f59028fc0bbbd08d9382a 272 Gene3D G3DSA:3.30.70.1290 29 167 1.3E-11 T 11-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 APT56_22000 cd56aecad3389b3a6dd76765a02c906b 270 SUPERFAMILY SSF52540 7 228 2.37E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_22000 cd56aecad3389b3a6dd76765a02c906b 270 SMART SM00382 37 217 1.2E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APT56_22000 cd56aecad3389b3a6dd76765a02c906b 270 Gene3D G3DSA:3.40.50.300 3 220 3.2E-60 T 11-10-2018 APT56_22000 cd56aecad3389b3a6dd76765a02c906b 270 Pfam PF00005 ABC transporter 29 167 2.3E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APT56_22000 cd56aecad3389b3a6dd76765a02c906b 270 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APT56_24250 2dd042ad10dc285f652145e8c7dde880 167 Gene3D G3DSA:3.30.1390.10 4 66 5.2E-5 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APT56_22645 6f2a90755c37634ce7c390f66d81983f 272 SUPERFAMILY SSF53955 140 256 9.38E-24 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_22645 6f2a90755c37634ce7c390f66d81983f 272 Gene3D G3DSA:1.10.530.10 132 259 1.3E-20 T 11-10-2018 APT56_22645 6f2a90755c37634ce7c390f66d81983f 272 Pfam PF01464 Transglycosylase SLT domain 157 239 1.4E-13 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 APT56_19760 76dbe4d66f8fd00278fd81bf904c2a74 309 Pfam PF00482 Type II secretion system (T2SS), protein F 142 268 8.9E-14 T 11-10-2018 IPR018076 Type II secretion system F domain APT56_05400 16bba1f66dc4d4ddf4f9a13042e874eb 418 SUPERFAMILY SSF103473 12 409 1.44E-33 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_05400 16bba1f66dc4d4ddf4f9a13042e874eb 418 Gene3D G3DSA:1.20.1250.20 9 403 1.5E-25 T 11-10-2018 APT56_05400 16bba1f66dc4d4ddf4f9a13042e874eb 418 Pfam PF07690 Major Facilitator Superfamily 27 293 5.9E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APT56_09000 2d18d8952ecb6de8ac77a1815b1f7321 244 Pfam PF10707 PhoP regulatory network protein YrbL 23 224 1.7E-69 T 11-10-2018 IPR019647 PhoP regulatory network protein YrbL APT56_16185 b7c693c96ea17ba048935fb5a97968ee 770 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 314 435 1.6E-9 T 11-10-2018 IPR018712 Domain of unknown function DUF2235 APT56_07475 44bc07b024ebca7fd8623d46fbfaa971 366 Gene3D G3DSA:3.40.50.1110 102 216 1.1E-7 T 11-10-2018 IPR036514 SGNH hydrolase superfamily APT56_07475 44bc07b024ebca7fd8623d46fbfaa971 366 SUPERFAMILY SSF52266 117 218 3.66E-7 T 11-10-2018 APT56_07475 44bc07b024ebca7fd8623d46fbfaa971 366 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 91 347 4.4E-62 T 11-10-2018 IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain APT56_01335 07c43d8ce139345d0ce53b310d018f9d 445 Gene3D G3DSA:1.10.4160.10 8 436 1.4E-9 T 11-10-2018 IPR038271 Purine-cytosine permease superfamily APT56_10890 301df4fcc0b3e97b64e15a907ff68bf8 124 Gene3D G3DSA:3.40.30.10 21 120 7.3E-13 T 11-10-2018 APT56_10890 301df4fcc0b3e97b64e15a907ff68bf8 124 Pfam PF13417 Glutathione S-transferase, N-terminal domain 45 122 4.8E-13 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APT56_10890 301df4fcc0b3e97b64e15a907ff68bf8 124 ProSitePatterns PS00195 Glutaredoxin active site. 45 61 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 APT56_10890 301df4fcc0b3e97b64e15a907ff68bf8 124 SUPERFAMILY SSF52833 44 122 2.21E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APT56_13840 2ef9147cac3e7798647158831164a118 404 Pfam PF01566 Natural resistance-associated macrophage protein 17 379 1.6E-78 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 APT56_17805 a3d58d0d6025f8598125c810b4cbf892 396 Gene3D G3DSA:1.20.1250.20 214 393 1.0E-8 T 11-10-2018 APT56_17805 a3d58d0d6025f8598125c810b4cbf892 396 Gene3D G3DSA:1.20.1250.20 9 197 3.6E-8 T 11-10-2018 APT56_17805 a3d58d0d6025f8598125c810b4cbf892 396 SUPERFAMILY SSF103473 14 391 2.62E-24 T 11-10-2018 IPR036259 MFS transporter superfamily APT56_22195 b109daf90d7b7b185944eaf3d8d770a7 156 Pfam PF16155 Domain of unknown function (DUF4863) 10 153 3.3E-57 T 11-10-2018 IPR032345 Protein of unknown function DUF4863 APT56_04755 22e9455339439c3373f65d6e95b56f94 317 Gene3D G3DSA:3.20.20.70 6 315 4.3E-68 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_04755 22e9455339439c3373f65d6e95b56f94 317 SUPERFAMILY SSF51412 8 292 1.34E-59 T 11-10-2018 APT56_04755 22e9455339439c3373f65d6e95b56f94 317 Pfam PF03060 Nitronate monooxygenase 10 304 2.7E-25 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APT56_00180 4eb51608caac516ad7aca150341f8cb4 508 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 21 445 7.9E-139 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane APT56_25665 8f2778b2087f7d35400fa5728fff2aeb 962 SUPERFAMILY SSF69360 91 171 6.28E-7 T 11-10-2018 APT56_25665 8f2778b2087f7d35400fa5728fff2aeb 962 Pfam PF14903 WG containing repeat 598 630 0.0097 T 11-10-2018 IPR032774 WG containing repeat APT56_25665 8f2778b2087f7d35400fa5728fff2aeb 962 Pfam PF14903 WG containing repeat 126 161 1.4E-11 T 11-10-2018 IPR032774 WG containing repeat APT56_25665 8f2778b2087f7d35400fa5728fff2aeb 962 Pfam PF14903 WG containing repeat 92 126 1.1E-10 T 11-10-2018 IPR032774 WG containing repeat APT56_25665 8f2778b2087f7d35400fa5728fff2aeb 962 Pfam PF14903 WG containing repeat 635 658 0.0017 T 11-10-2018 IPR032774 WG containing repeat APT56_12780 91169ace24e0ddb93ee3177c17ca8128 263 SUPERFAMILY SSF56524 59 262 5.1E-64 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 APT56_12780 91169ace24e0ddb93ee3177c17ca8128 263 Gene3D G3DSA:3.90.420.10 88 262 1.0E-49 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 APT56_12780 91169ace24e0ddb93ee3177c17ca8128 263 Pfam PF00174 Oxidoreductase molybdopterin binding domain 109 252 4.4E-32 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APT56_09855 adbbfb3780b50944e73caa029672f1dd 138 Pfam PF04304 Protein of unknown function (DUF454) 2 116 3.5E-36 T 11-10-2018 IPR007401 Protein of unknown function DUF454 APT56_09855 adbbfb3780b50944e73caa029672f1dd 138 PIRSF PIRSF016789 1 122 1.4E-36 T 11-10-2018 IPR007401 Protein of unknown function DUF454 APT56_00785 e4e354b3ea6ed4410476d89320f9ac84 202 Gene3D G3DSA:3.40.50.850 5 195 6.5E-37 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_00785 e4e354b3ea6ed4410476d89320f9ac84 202 Pfam PF00857 Isochorismatase family 13 184 2.4E-19 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_00785 e4e354b3ea6ed4410476d89320f9ac84 202 SUPERFAMILY SSF52499 5 190 2.75E-37 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_23805 84c7c182f4edb03f89c22217017cee0e 503 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 436 9.0E-130 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane APT56_04685 21e586f73efce6dd1e02a118eb4a8d77 268 Gene3D G3DSA:3.30.2010.10 173 260 3.0E-18 T 11-10-2018 APT56_04685 21e586f73efce6dd1e02a118eb4a8d77 268 Pfam PF01863 Protein of unknown function DUF45 46 260 5.2E-60 T 11-10-2018 IPR002725 Protein of unknown function DUF45 APT56_21780 adb96266f57c0b2b9deb23b9ae376feb 315 SMART SM00342 221 304 8.7E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_21780 adb96266f57c0b2b9deb23b9ae376feb 315 SUPERFAMILY SSF46689 205 254 1.34E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_21780 adb96266f57c0b2b9deb23b9ae376feb 315 Pfam PF06719 AraC-type transcriptional regulator N-terminus 41 191 1.4E-46 T 11-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal APT56_21780 adb96266f57c0b2b9deb23b9ae376feb 315 Pfam PF12833 Helix-turn-helix domain 227 301 1.1E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APT56_21780 adb96266f57c0b2b9deb23b9ae376feb 315 Gene3D G3DSA:1.10.10.60 200 309 1.6E-26 T 11-10-2018 APT56_21780 adb96266f57c0b2b9deb23b9ae376feb 315 SUPERFAMILY SSF46689 257 307 2.33E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_12830 c9a6e1a959f5f7007738bbac41ad04e8 60 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 22 55 1.2E-8 T 11-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 APT56_26250 1780880a402bbcbabeb9f6bb17ab1d24 144 Gene3D G3DSA:3.30.1360.200 21 116 5.3E-7 T 11-10-2018 APT56_09105 9f62ddb2f64b01a2b01fa0c660d2619f 254 Pfam PF02698 DUF218 domain 79 244 1.7E-32 T 11-10-2018 IPR003848 Domain of unknown function DUF218 APT56_09105 9f62ddb2f64b01a2b01fa0c660d2619f 254 Gene3D G3DSA:3.40.50.620 119 216 3.5E-5 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APT56_27470 4cc5e8f1ecbeca04bbe8a9a32ff5f252 258 Pfam PF04116 Fatty acid hydroxylase superfamily 105 234 1.5E-21 T 11-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 APT56_21915 bd9484046fffd442b9ae9d4ff886a66f 143 Pfam PF14282 FlxA-like protein 63 130 5.3E-7 T 11-10-2018 IPR025577 FlxA-like protein APT56_21080 9549ca72420762c02e671defa122994d 324 Pfam PF00122 E1-E2 ATPase 168 239 4.7E-9 T 11-10-2018 APT56_10010 c01842c9ab07e5ec9ca90c64bb9332fd 144 Pfam PF17274 Family of unknown function (DUF5339) 75 142 6.6E-9 T 11-10-2018 IPR020493 Uncharacterised protein family HI0310 APT56_27300 39f8873c1ff9d371f6a89e122599c929 317 Pfam PF02470 MlaD protein 41 111 2.5E-11 T 11-10-2018 IPR003399 Mce/MlaD APT56_10515 ca390627e5c91ac240fadb2390e702b2 677 Pfam PF01522 Polysaccharide deacetylase 105 273 1.3E-26 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 APT56_10515 ca390627e5c91ac240fadb2390e702b2 677 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 52 671 1.3E-264 T 11-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 APT56_10515 ca390627e5c91ac240fadb2390e702b2 677 SUPERFAMILY SSF88713 69 280 5.19E-35 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APT56_10515 ca390627e5c91ac240fadb2390e702b2 677 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 321 651 3.5E-149 T 11-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal APT56_10515 ca390627e5c91ac240fadb2390e702b2 677 Gene3D G3DSA:3.20.20.80 312 677 2.4E-145 T 11-10-2018 APT56_10515 ca390627e5c91ac240fadb2390e702b2 677 Gene3D G3DSA:3.20.20.370 47 311 1.2E-68 T 11-10-2018 APT56_08875 6d97dd3529c26bd8c9329a699873df26 253 Pfam PF12697 Alpha/beta hydrolase family 20 243 4.1E-12 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APT56_08875 6d97dd3529c26bd8c9329a699873df26 253 SUPERFAMILY SSF53474 7 247 6.74E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_08875 6d97dd3529c26bd8c9329a699873df26 253 Gene3D G3DSA:3.40.50.1820 3 249 2.3E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_15460 9f5bab86968145db85b7af0f926cbc6d 226 Pfam PF01965 DJ-1/PfpI family 25 222 2.8E-17 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 APT56_15460 9f5bab86968145db85b7af0f926cbc6d 226 Gene3D G3DSA:3.40.50.880 1 225 4.8E-82 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_15460 9f5bab86968145db85b7af0f926cbc6d 226 SUPERFAMILY SSF52317 2 224 7.03E-77 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APT56_20565 5594e1da5af3275f93cffd7680893012 211 SUPERFAMILY SSF110849 50 183 2.09E-17 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily APT56_20565 5594e1da5af3275f93cffd7680893012 211 Pfam PF02195 ParB-like nuclease domain 53 123 1.6E-10 T 11-10-2018 IPR003115 ParB/Sulfiredoxin APT56_20565 5594e1da5af3275f93cffd7680893012 211 SMART SM00470 52 150 7.8E-4 T 11-10-2018 IPR003115 ParB/Sulfiredoxin APT56_00305 f53dd924c79fc7e97f574d39bd18c96f 228 Pfam PF00857 Isochorismatase family 16 169 7.7E-28 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 APT56_00305 f53dd924c79fc7e97f574d39bd18c96f 228 SUPERFAMILY SSF52499 5 207 7.06E-45 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_00305 f53dd924c79fc7e97f574d39bd18c96f 228 Gene3D G3DSA:3.40.50.850 5 208 2.2E-46 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 APT56_15150 e9f471b24b7b8a8b2dc3dc0c22d1af62 250 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 29 250 1.2E-49 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 APT56_15150 e9f471b24b7b8a8b2dc3dc0c22d1af62 250 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 1 250 5.9E-50 T 11-10-2018 IPR010239 Conserved hypothetical protein CHP02001 APT56_04025 24756808891c9f20e747df5709c46b24 230 Pfam PF04172 LrgB-like family 14 225 6.1E-65 T 11-10-2018 IPR007300 CidB/LrgB family APT56_06935 34c80b70fe54c9d9d8ea9fc678f691bd 219 Pfam PF00877 NlpC/P60 family 100 206 3.1E-28 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain APT56_06935 34c80b70fe54c9d9d8ea9fc678f691bd 219 Gene3D G3DSA:3.90.1720.10 83 214 2.2E-41 T 11-10-2018 APT56_06935 34c80b70fe54c9d9d8ea9fc678f691bd 219 SUPERFAMILY SSF54001 88 207 7.85E-40 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APT56_05720 b8ecb4ce25d18e007ce795c893343ae8 697 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 48 685 5.6E-233 T 11-10-2018 IPR019899 Sodium/solute symporter, VC2705 subfamily APT56_05720 b8ecb4ce25d18e007ce795c893343ae8 697 Gene3D G3DSA:1.20.1730.10 338 674 2.1E-26 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily APT56_05720 b8ecb4ce25d18e007ce795c893343ae8 697 Gene3D G3DSA:1.20.1730.10 63 268 9.1E-38 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily APT56_05720 b8ecb4ce25d18e007ce795c893343ae8 697 Pfam PF00474 Sodium:solute symporter family 495 610 1.2E-15 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 APT56_05720 b8ecb4ce25d18e007ce795c893343ae8 697 Pfam PF00474 Sodium:solute symporter family 73 232 1.7E-28 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 APT56_00910 7656b66e1b247da25f3b1e709a90d180 114 Pfam PF08895 Domain of unknown function (DUF1840) 1 108 1.5E-27 T 11-10-2018 IPR014991 Protein of unknown function DUF1840 APT56_12670 a7df4747bb9f0c2fc79ee81bdbdb91e6 357 Pfam PF13343 Bacterial extracellular solute-binding protein 84 316 7.4E-29 T 11-10-2018 APT56_12670 a7df4747bb9f0c2fc79ee81bdbdb91e6 357 Gene3D G3DSA:3.40.190.10 137 348 1.8E-62 T 11-10-2018 APT56_12670 a7df4747bb9f0c2fc79ee81bdbdb91e6 357 SUPERFAMILY SSF53850 31 349 5.67E-50 T 11-10-2018 APT56_12670 a7df4747bb9f0c2fc79ee81bdbdb91e6 357 Gene3D G3DSA:3.40.190.10 47 317 1.8E-62 T 11-10-2018 APT56_09435 5ce610ee86f958919ba1a1aa2c50a51c 146 Gene3D G3DSA:2.60.40.2500 35 143 1.7E-12 T 11-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily APT56_09435 5ce610ee86f958919ba1a1aa2c50a51c 146 Pfam PF03524 Conjugal transfer protein 39 112 3.9E-12 T 11-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX APT56_14190 9ecb780d57a8d0598c6b8faed78eb029 509 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 441 3.2E-137 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane APT56_19130 1fb0f0f664c0555f536bbe1ab390f8a0 161 Pfam PF10722 Putative bacterial sensory transduction regulator 12 130 1.9E-9 T 11-10-2018 IPR019660 Putative sensory transduction regulator YbjN APT56_21715 73e6a1302cd029e9b9526c547b402ecf 111 PIRSF PIRSF028744 5 111 4.5E-31 T 11-10-2018 IPR014056 Addiction module killer protein, predicted APT56_21715 73e6a1302cd029e9b9526c547b402ecf 111 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 13 106 1.5E-28 T 11-10-2018 IPR014056 Addiction module killer protein, predicted APT56_13215 ef408f3bc2c339166f8f7e156808e820 399 Gene3D G3DSA:2.120.10.30 37 226 2.9E-7 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APT56_13215 ef408f3bc2c339166f8f7e156808e820 399 SUPERFAMILY SSF69304 58 314 1.44E-10 T 11-10-2018 APT56_02600 b080f0659061c99ae5a9d84dc36fe26a 302 Pfam PF05275 Copper resistance protein B precursor (CopB) 97 302 8.7E-81 T 11-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 APT56_02775 e014f2fccaa280a253589bb5123ff776 258 Gene3D G3DSA:3.30.1330.200 20 178 1.9E-50 T 11-10-2018 IPR038592 CheD-like superfamily APT56_02775 e014f2fccaa280a253589bb5123ff776 258 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 18 171 29.449 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 APT56_02775 e014f2fccaa280a253589bb5123ff776 258 Pfam PF03975 CheD chemotactic sensory transduction 65 167 3.2E-31 T 11-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 APT56_02775 e014f2fccaa280a253589bb5123ff776 258 SUPERFAMILY SSF64438 23 169 2.29E-49 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic APT56_24620 589a67b834f75a9982d6029fe6ad7137 209 Gene3D G3DSA:3.30.470.20 30 119 4.6E-6 T 11-10-2018 APT56_02400 0f55ed95bf4b0b42bd96dec6f51090f1 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 37 309 1.1E-32 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_00480 3c6089c9fcc021098def24553436bdc6 385 SUPERFAMILY SSF54373 241 323 1.15E-10 T 11-10-2018 APT56_00480 3c6089c9fcc021098def24553436bdc6 385 SUPERFAMILY SSF51905 18 381 2.1E-40 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00480 3c6089c9fcc021098def24553436bdc6 385 Gene3D G3DSA:3.30.9.10 105 324 7.7E-75 T 11-10-2018 APT56_00480 3c6089c9fcc021098def24553436bdc6 385 Gene3D G3DSA:3.50.50.60 19 363 7.7E-75 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_00480 3c6089c9fcc021098def24553436bdc6 385 Pfam PF01266 FAD dependent oxidoreductase 19 360 2.0E-47 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_26895 f1862c44233878e2c53128d3db4ff122 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 329 7.5E-30 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_05630 9dde4f4bca9d22099b56d3a74ecf0ab0 390 Pfam PF05762 VWA domain containing CoxE-like protein 184 269 2.9E-7 T 11-10-2018 IPR008912 Uncharacterised protein family CoxE-like APT56_05810 bea32fc79b6d1928826b3db4e546a139 111 Pfam PF12778 PXPV repeat (3 copies) 37 56 2.4E-5 T 11-10-2018 IPR024446 PXPV repeat APT56_05810 bea32fc79b6d1928826b3db4e546a139 111 Pfam PF12778 PXPV repeat (3 copies) 57 76 0.0021 T 11-10-2018 IPR024446 PXPV repeat APT56_14265 8d730ef86431c31eac4f2045e2172d90 134 Pfam PF11162 Protein of unknown function (DUF2946) 18 128 1.1E-5 T 11-10-2018 IPR021333 Protein of unknown function DUF2946 APT56_21940 c2a4f677eac92ca6430b55896f4c0ee4 214 PIRSF PIRSF000709 1 119 4.3E-8 T 11-10-2018 APT56_21940 c2a4f677eac92ca6430b55896f4c0ee4 214 SUPERFAMILY SSF53254 1 207 8.12E-57 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APT56_21940 c2a4f677eac92ca6430b55896f4c0ee4 214 SMART SM00855 3 161 1.5E-21 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APT56_21940 c2a4f677eac92ca6430b55896f4c0ee4 214 Gene3D G3DSA:3.40.50.1240 1 211 8.0E-57 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APT56_21940 c2a4f677eac92ca6430b55896f4c0ee4 214 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 200 3.9E-60 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APT56_15005 a9fa7e0a3f7609c0473fb3ec7464a921 283 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 272 8.8E-43 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_03980 ae134fdfcfefa590bfba30bc25541ebb 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 295 2.8E-32 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_13865 f5187c38e8eb87c49feb82244fb180e0 141 Pfam PF00011 Hsp20/alpha crystallin family 40 136 1.2E-17 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain APT56_13865 f5187c38e8eb87c49feb82244fb180e0 141 Gene3D G3DSA:2.60.40.790 2 141 3.7E-32 T 11-10-2018 IPR008978 HSP20-like chaperone APT56_13865 f5187c38e8eb87c49feb82244fb180e0 141 SUPERFAMILY SSF49764 17 140 1.15E-33 T 11-10-2018 IPR008978 HSP20-like chaperone APT56_00320 bd61982c9c1fc92c5ce273e84e929cd7 86 TIGRFAM TIGR03510 XapX: XapX domain 4 48 4.8E-19 T 11-10-2018 IPR020017 XapX domain APT56_00320 bd61982c9c1fc92c5ce273e84e929cd7 86 Pfam PF07235 Protein of unknown function (DUF1427) 2 83 3.5E-39 T 11-10-2018 IPR009872 Protein of unknown function DUF1427 APT56_17595 1fe8365a4b76e496c10d92ce4a9c136c 417 TIGRFAM TIGR00843 benE: benzoate transporter 18 387 3.2E-115 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 APT56_17595 1fe8365a4b76e496c10d92ce4a9c136c 417 Pfam PF03594 Benzoate membrane transport protein 18 386 2.8E-132 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 APT56_16195 844846db9c7c6bdc76d78f8b6a9397f4 322 Pfam PF13503 Domain of unknown function (DUF4123) 29 164 1.7E-11 T 11-10-2018 IPR025391 Domain of unknown function DUF4123 APT56_16970 28cc905cc5c82a72ff6decb38c922b09 332 Gene3D G3DSA:3.50.30.50 71 332 1.1E-9 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_16970 28cc905cc5c82a72ff6decb38c922b09 332 Pfam PF04199 Putative cyclase 50 260 1.5E-14 T 11-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_16970 28cc905cc5c82a72ff6decb38c922b09 332 SUPERFAMILY SSF102198 94 331 5.23E-10 T 11-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 APT56_00635 4b02d117084e4f51217cd176666668e2 351 SUPERFAMILY SSF53850 40 278 1.61E-32 T 11-10-2018 APT56_00635 4b02d117084e4f51217cd176666668e2 351 Pfam PF09084 NMT1/THI5 like 51 269 5.6E-22 T 11-10-2018 IPR015168 SsuA/THI5-like APT56_00635 4b02d117084e4f51217cd176666668e2 351 Gene3D G3DSA:3.40.190.10 50 310 1.9E-48 T 11-10-2018 APT56_00635 4b02d117084e4f51217cd176666668e2 351 Gene3D G3DSA:3.40.190.10 121 232 1.9E-48 T 11-10-2018 APT56_18740 216ba7e9f4528233860548c67d19c71c 68 Pfam PF09791 Oxidoreductase-like protein, N-terminal 23 61 3.4E-14 T 11-10-2018 IPR019180 Oxidoreductase-like, N-terminal APT56_01535 160793e610a8282ddfc1fdd6f6dfa211 300 Pfam PF14080 Domain of unknown function (DUF4261) 207 283 1.2E-12 T 11-10-2018 IPR025357 Domain of unknown function DUF4261 APT56_22660 b138502a37169e2574e5327d43680ca7 138 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 10 118 3.7E-19 T 11-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III APT56_12265 c16388ee99d802ec6e721a56dddf6245 285 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 242 268 - T 11-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 APT56_12265 c16388ee99d802ec6e721a56dddf6245 285 Pfam PF01148 Cytidylyltransferase family 4 280 7.4E-52 T 11-10-2018 APT56_24445 8abdb62a9d4b3dded0006b7240ffa1ff 833 Pfam PF05170 AsmA family 1 722 3.5E-63 T 11-10-2018 IPR007844 AsmA APT56_18460 444ca4d36aebcada19aaffa86dcd3cf3 276 SUPERFAMILY SSF51621 3 197 2.13E-85 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APT56_18460 444ca4d36aebcada19aaffa86dcd3cf3 276 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 9 274 1.2E-132 T 11-10-2018 IPR009215 TIM-barrel domain, IGPS-like APT56_18460 444ca4d36aebcada19aaffa86dcd3cf3 276 PIRSF PIRSF034452 1 276 2.2E-153 T 11-10-2018 IPR009215 TIM-barrel domain, IGPS-like APT56_18460 444ca4d36aebcada19aaffa86dcd3cf3 276 Gene3D G3DSA:3.20.20.70 1 252 6.0E-121 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APT56_19805 2c3006334ae4c7889f692c0026137c7d 276 Pfam PF03707 Bacterial signalling protein N terminal repeat 60 117 2.7E-17 T 11-10-2018 IPR005330 MHYT domain APT56_19805 2c3006334ae4c7889f692c0026137c7d 276 Pfam PF03707 Bacterial signalling protein N terminal repeat 123 181 5.2E-16 T 11-10-2018 IPR005330 MHYT domain APT56_10685 772dfe4d51df98c97ed915428f35cfb6 220 Pfam PF02525 Flavodoxin-like fold 8 167 7.0E-19 T 11-10-2018 IPR003680 Flavodoxin-like fold APT56_10685 772dfe4d51df98c97ed915428f35cfb6 220 SUPERFAMILY SSF52218 8 208 3.71E-30 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_10685 772dfe4d51df98c97ed915428f35cfb6 220 Gene3D G3DSA:3.40.50.360 6 188 2.8E-29 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APT56_27385 cf9d1841f79fdad5981fc73ecc107044 112 SUPERFAMILY SSF103481 29 109 2.35E-9 T 11-10-2018 APT56_11695 4f01470dac75d183cfbb8dd689f69b36 652 Pfam PF05787 Bacterial protein of unknown function (DUF839) 204 560 3.2E-20 T 11-10-2018 IPR008557 Protein of unknown function DUF839 APT56_12145 6566061ee1086d244d85a7bcee7b6542 117 Gene3D G3DSA:1.20.58.380 9 97 6.6E-31 T 11-10-2018 APT56_12145 6566061ee1086d244d85a7bcee7b6542 117 Pfam PF05400 Flagellar protein FliT 25 110 2.8E-21 T 11-10-2018 IPR008622 Flagellar protein FliT APT56_23255 c702f42b6d89e5aef2793d374403fb78 348 Gene3D G3DSA:3.60.70.12 2 335 2.5E-111 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_23255 c702f42b6d89e5aef2793d374403fb78 348 SUPERFAMILY SSF56266 29 343 2.09E-68 T 11-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 APT56_23255 c702f42b6d89e5aef2793d374403fb78 348 Pfam PF03576 Peptidase family S58 30 340 6.8E-59 T 11-10-2018 IPR005321 Peptidase S58, DmpA APT56_20325 c3b4b9751c98da40c3c212313225bfa6 432 Pfam PF09375 Imelysin 36 404 2.4E-102 T 11-10-2018 IPR018976 Imelysin-like domain APT56_20325 c3b4b9751c98da40c3c212313225bfa6 432 Gene3D G3DSA:1.20.1420.20 16 409 1.2E-87 T 11-10-2018 IPR038352 Imelysin-like domain superfamily APT56_20980 7843d317e1e8681e80da760d581b660b 430 Gene3D G3DSA:3.30.9.10 124 344 4.5E-66 T 11-10-2018 APT56_20980 7843d317e1e8681e80da760d581b660b 430 SUPERFAMILY SSF51905 30 401 1.29E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_20980 7843d317e1e8681e80da760d581b660b 430 Gene3D G3DSA:3.50.50.60 31 383 4.5E-66 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APT56_20980 7843d317e1e8681e80da760d581b660b 430 Pfam PF01266 FAD dependent oxidoreductase 31 381 6.6E-55 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APT56_21250 1cead5b339e1774897dc63efbda2d076 489 Pfam PF13785 Domain of unknown function (DUF4178) 278 413 1.3E-14 T 11-10-2018 IPR025235 Domain of unknown function DUF4178 APT56_21250 1cead5b339e1774897dc63efbda2d076 489 Pfam PF13785 Domain of unknown function (DUF4178) 57 194 2.4E-19 T 11-10-2018 IPR025235 Domain of unknown function DUF4178 APT56_15725 f996f89b5eed6c59d968edca33a97131 88 Pfam PF01527 Transposase 2 71 1.9E-18 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 APT56_15725 f996f89b5eed6c59d968edca33a97131 88 SUPERFAMILY SSF46689 2 73 7.35E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_14655 8419eee541478be289b87c8a7d00192a 375 Pfam PF13458 Periplasmic binding protein 30 366 8.6E-62 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_14655 8419eee541478be289b87c8a7d00192a 375 SUPERFAMILY SSF53822 30 370 8.07E-94 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_14655 8419eee541478be289b87c8a7d00192a 375 Gene3D G3DSA:3.40.50.2300 150 278 2.2E-113 T 11-10-2018 APT56_14655 8419eee541478be289b87c8a7d00192a 375 Gene3D G3DSA:3.40.50.2300 32 351 2.2E-113 T 11-10-2018 APT56_14655 8419eee541478be289b87c8a7d00192a 375 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 260 278 1.6E-34 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14655 8419eee541478be289b87c8a7d00192a 375 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 335 350 1.6E-34 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14655 8419eee541478be289b87c8a7d00192a 375 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 283 296 1.6E-34 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14655 8419eee541478be289b87c8a7d00192a 375 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 93 103 1.6E-34 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14655 8419eee541478be289b87c8a7d00192a 375 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 1.6E-34 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14655 8419eee541478be289b87c8a7d00192a 375 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 1.6E-34 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_14655 8419eee541478be289b87c8a7d00192a 375 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 72 90 1.6E-34 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 APT56_17390 a1f5f93e62c0642087edb8b15f021e58 167 Gene3D G3DSA:1.20.1330.10 78 124 1.5E-35 T 11-10-2018 APT56_17390 a1f5f93e62c0642087edb8b15f021e58 167 SUPERFAMILY SSF64518 36 165 5.75E-28 T 11-10-2018 APT56_17390 a1f5f93e62c0642087edb8b15f021e58 167 Gene3D G3DSA:1.20.58.1830 130 164 1.5E-35 T 11-10-2018 APT56_17390 a1f5f93e62c0642087edb8b15f021e58 167 Pfam PF00700 Bacterial flagellin C-terminal helical region 80 164 5.2E-24 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 APT56_00775 f27014a0742e3fc226c88dd243bcc4f7 210 PIRSF PIRSF006324 1 209 8.1E-53 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_00775 f27014a0742e3fc226c88dd243bcc4f7 210 Pfam PF01810 LysE type translocator 16 207 1.3E-34 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_26585 de436b220cb26c8cfae7169c41fb2896 127 Pfam PF13663 Domain of unknown function (DUF4148) 56 86 1.0E-7 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_26585 de436b220cb26c8cfae7169c41fb2896 127 Pfam PF13663 Domain of unknown function (DUF4148) 92 123 1.7E-8 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_26585 de436b220cb26c8cfae7169c41fb2896 127 Pfam PF13663 Domain of unknown function (DUF4148) 1 51 1.0E-10 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_16180 149bd72ba8f8b8378ba59ae8a27dc839 259 Pfam PF11745 Protein of unknown function (DUF3304) 15 136 9.6E-10 T 11-10-2018 IPR021733 Protein of unknown function DUF3304 APT56_14100 4f50bf487d5e24342ffe3f9447bcad26 349 Pfam PF11740 Plasmid replication region DNA-binding N-term 7 123 8.4E-26 T 11-10-2018 IPR021104 KfrA, N-terminal DNA-binding domain APT56_18730 9afd2f25c72bade163ab037735d11c93 91 SUPERFAMILY SSF143011 2 88 7.45E-6 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily APT56_18730 9afd2f25c72bade163ab037735d11c93 91 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 90 6.5E-15 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APT56_18730 9afd2f25c72bade163ab037735d11c93 91 Gene3D G3DSA:3.30.2310.20 1 90 1.5E-11 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily APT56_12840 dc3a0121347cfc30467e08bb20b53372 116 Pfam PF11804 Protein of unknown function (DUF3325) 11 108 2.0E-31 T 11-10-2018 IPR021762 Protein of unknown function DUF3325 APT56_25490 7f7cb9f0e486724b5d6afe83674e0579 107 Pfam PF12779 YXWGXW repeat (2 copies) 52 76 3.6E-8 T 11-10-2018 IPR024447 YXWGXW repeat APT56_23670 86ca2f2af53d221cc579036f21af56ec 242 Pfam PF02104 SURF1 family 11 222 6.3E-42 T 11-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.7E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 4.7E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.7E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 4.7E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 4.7E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 4.7E-24 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 Gene3D G3DSA:3.40.50.720 1 258 3.9E-62 T 11-10-2018 APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 SUPERFAMILY SSF51735 7 253 9.21E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APT56_04415 1e8f41ca2e711483b4cb590f77c220ef 259 Pfam PF00106 short chain dehydrogenase 8 193 2.1E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APT56_22665 4902ec6fb5c2892639401ee895ce1296 105 Pfam PF05957 Bacterial protein of unknown function (DUF883) 13 105 8.4E-31 T 11-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 APT56_02820 74d0a89764e38b516a337061ef050cd2 391 Gene3D G3DSA:3.40.50.2300 144 360 2.2E-85 T 11-10-2018 APT56_02820 74d0a89764e38b516a337061ef050cd2 391 Pfam PF13458 Periplasmic binding protein 27 364 3.6E-65 T 11-10-2018 IPR028081 Leucine-binding protein domain APT56_02820 74d0a89764e38b516a337061ef050cd2 391 Gene3D G3DSA:3.40.50.2300 30 354 2.2E-85 T 11-10-2018 APT56_02820 74d0a89764e38b516a337061ef050cd2 391 SUPERFAMILY SSF53822 27 389 4.37E-76 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_23080 bcfce3e88775b3d08a16207bc9376d34 417 SUPERFAMILY SSF53822 31 410 1.36E-90 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APT56_23080 bcfce3e88775b3d08a16207bc9376d34 417 Pfam PF13433 Periplasmic binding protein domain 32 408 1.1E-171 T 11-10-2018 APT56_23080 bcfce3e88775b3d08a16207bc9376d34 417 Gene3D G3DSA:3.40.50.2300 34 376 5.0E-138 T 11-10-2018 APT56_23080 bcfce3e88775b3d08a16207bc9376d34 417 Gene3D G3DSA:3.40.50.2300 147 396 5.0E-138 T 11-10-2018 APT56_23080 bcfce3e88775b3d08a16207bc9376d34 417 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 32 405 1.7E-178 T 11-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like APT56_04145 85360387b8177bdd82493f5f5c382811 159 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 15 154 3.3E-20 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 APT56_08600 9c26d6d9ad38c253e9a011d9c0827f80 247 Gene3D G3DSA:2.40.50.230 26 129 1.2E-20 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily APT56_17415 6c1c945cfaa68301969c7ccdcbced042 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 4.1E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17415 6c1c945cfaa68301969c7ccdcbced042 199 SUPERFAMILY SSF46689 10 84 2.41E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APT56_17415 6c1c945cfaa68301969c7ccdcbced042 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 8.5E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17415 6c1c945cfaa68301969c7ccdcbced042 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 8.5E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APT56_17415 6c1c945cfaa68301969c7ccdcbced042 199 Gene3D G3DSA:1.10.357.10 7 199 1.5E-23 T 11-10-2018 APT56_25565 2da9e178b93584711d59aa6ec1d62bc4 201 Pfam PF06805 Bacteriophage lambda tail assembly protein I 5 89 3.0E-9 T 11-10-2018 IPR010654 Bacteriophage lambda tail assembly I APT56_23345 6ce44279188e810990c3eb004eae9fcf 205 Pfam PF04891 NifQ 48 200 3.6E-35 T 11-10-2018 IPR006975 NifQ GO:0009399|GO:0030151 APT56_06885 d02c5bdd74db1852aa05d961c8d4d927 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 25 228 4.6E-41 T 11-10-2018 IPR006214 Bax inhibitor 1-related APT56_14595 840fca82879788e2cf667a20bb90af2b 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 5.4E-51 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_11275 16ea2d3056e67dadc2e07537a33fed34 209 Pfam PF01810 LysE type translocator 13 208 2.8E-33 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_11275 16ea2d3056e67dadc2e07537a33fed34 209 PIRSF PIRSF006324 1 209 6.8E-49 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APT56_07495 dd36a831a3af3e189fcf02e1e9606143 737 Gene3D G3DSA:2.60.120.260 46 175 4.6E-6 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily APT56_07495 dd36a831a3af3e189fcf02e1e9606143 737 Pfam PF03170 Bacterial cellulose synthase subunit 47 184 1.0E-6 T 11-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 APT56_08560 680c221707c3121ad5b468428d38ce53 491 Pfam PF11863 Protein of unknown function (DUF3383) 7 489 7.1E-194 T 11-10-2018 IPR021808 Protein of unknown function DUF3383 APT56_05250 d9258939eec6d52db6cbab2069aa12ee 351 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 20 334 1.6E-60 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APT56_23250 1c9ea12dfd05482b14b03e19dfa69c15 207 Pfam PF03006 Haemolysin-III related 4 197 1.1E-35 T 11-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 APT56_23250 1c9ea12dfd05482b14b03e19dfa69c15 207 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 5 202 2.1E-52 T 11-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 APT56_18475 f1272935e7ea1bddbdec8515b9444fec 549 SUPERFAMILY SSF89550 57 366 9.81E-16 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APT56_19035 fc30f0e4cad5748fe5b020336cedb08e 176 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 160 6.9E-21 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_26570 6597cc6148d2bc2dedf34572734a1749 174 Pfam PF09335 SNARE associated Golgi protein 56 161 2.6E-11 T 11-10-2018 IPR032816 SNARE associated Golgi protein APT56_19790 5c1b0046b863074afd8eae4ea68539b7 146 Pfam PF07811 TadE-like protein 2 32 3.7E-5 T 11-10-2018 IPR012495 TadE-like APT56_22520 6a77b537ac5066c258b31a07345dfc32 491 Pfam PF01384 Phosphate transporter family 30 479 2.4E-84 T 11-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 APT56_25630 912f6e3d51348a2954aa1c88371057b6 160 SUPERFAMILY SSF55961 38 138 3.5E-8 T 11-10-2018 APT56_25630 912f6e3d51348a2954aa1c88371057b6 160 Gene3D G3DSA:3.30.530.20 33 153 6.0E-8 T 11-10-2018 IPR023393 START-like domain superfamily APT56_25600 854db3ca9a7498a76164f859275d49a0 155 Gene3D G3DSA:2.30.110.60 2 149 1.7E-15 T 11-10-2018 APT56_12075 e447cf7f071b71aa98d276262889e135 107 Pfam PF04347 Flagellar biosynthesis protein, FliO 25 105 1.4E-20 T 11-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 APT56_12075 e447cf7f071b71aa98d276262889e135 107 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 13 80 5.1E-23 T 11-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 APT56_24310 29946aeb5648ee9902a3d36e06914a0f 306 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 293 7.7E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_21385 a9aa43d985129f3ac12265417df3b1ea 395 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 384 1.9E-48 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_23180 86c859410ffe720eee979cbe276f7fbb 155 Pfam PF05425 Copper resistance protein D 47 154 2.2E-12 T 11-10-2018 IPR008457 Copper resistance protein D GO:0016021 APT56_01595 fb3e900e630c72b99f18613f27bc170a 484 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 63 222 3.9E-21 T 11-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like APT56_05385 a8cd17d5fb3e69485790f5b55c4c4912 249 Pfam PF03591 AzlC protein 33 177 1.8E-31 T 11-10-2018 IPR011606 Branched-chain amino acid transport, permease APT56_09235 2811b19cfca233e41efbb5ab6538eae6 327 ProDom PD024016 LIPOPOLYSACCHARIDE BIOSYNTHESIS CORE RFAZ WAAZ 87 316 1.0E-10 T 11-10-2018 APT56_08000 74b04a954e3b0aeb68e8811a9d8a7179 189 Pfam PF01966 HD domain 29 101 8.5E-5 T 11-10-2018 IPR006674 HD domain APT56_08000 74b04a954e3b0aeb68e8811a9d8a7179 189 TIGRFAM TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein 3 178 6.2E-75 T 11-10-2018 IPR017670 Phosphonate degradation operon associated HDIG domain protein APT56_08000 74b04a954e3b0aeb68e8811a9d8a7179 189 SUPERFAMILY SSF109604 6 63 8.13E-9 T 11-10-2018 APT56_08000 74b04a954e3b0aeb68e8811a9d8a7179 189 Gene3D G3DSA:1.10.3210.10 2 184 3.0E-54 T 11-10-2018 APT56_08955 5333969ea45dfb4a21eeeb8d61ba0d06 843 Pfam PF02687 FtsX-like permease family 302 385 8.5E-9 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APT56_08955 5333969ea45dfb4a21eeeb8d61ba0d06 843 Pfam PF02687 FtsX-like permease family 747 836 6.6E-8 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APT56_10200 06d2518feb14a86bf507bc7dbce51d57 452 Pfam PF11863 Protein of unknown function (DUF3383) 5 446 2.6E-67 T 11-10-2018 IPR021808 Protein of unknown function DUF3383 APT56_22835 69fd0dc47c717b27335b2917593e86aa 292 SUPERFAMILY SSF103481 41 138 1.83E-8 T 11-10-2018 APT56_22835 69fd0dc47c717b27335b2917593e86aa 292 SUPERFAMILY SSF103481 193 290 3.79E-6 T 11-10-2018 APT56_15995 e714ea3f7690f9125c7ebcfccad1805b 268 Pfam PF02596 Uncharacterised ArCR, COG2043 23 231 4.6E-37 T 11-10-2018 IPR003748 Protein of unknown function DUF169 APT56_07455 f98f10563e18840784478d8f1b79c7cf 226 Pfam PF11182 Alginate O-acetyl transferase AlgF 14 180 4.2E-14 T 11-10-2018 IPR035422 Alginate O-acetyl transferase AlgF GO:0042121 APT56_19960 ea9d9bde6cfce2094d3456629a08f3f3 430 Pfam PF04932 O-Antigen ligase 190 332 7.1E-14 T 11-10-2018 IPR007016 O-antigen ligase-related APT56_25595 45f1d4e082ddb22d4c063573d6b9fb5a 157 Gene3D G3DSA:3.30.2220.20 10 149 6.0E-38 T 11-10-2018 IPR038556 Tail assembly chaperone Gp13-like superfamily APT56_25595 45f1d4e082ddb22d4c063573d6b9fb5a 157 Pfam PF06222 Phage tail assembly chaperone 14 141 5.2E-28 T 11-10-2018 IPR010411 Phage tail assembly chaperone Gp13-like APT56_22215 79f0607ca5e7d107420e6473423a2908 293 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 282 5.5E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_10050 b0b1a95a94c2126446be633343144dfc 143 Gene3D G3DSA:1.10.1660.10 13 87 9.7E-22 T 11-10-2018 APT56_10050 b0b1a95a94c2126446be633343144dfc 143 SUPERFAMILY SSF46955 17 117 2.66E-19 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APT56_10050 b0b1a95a94c2126446be633343144dfc 143 Pfam PF13411 MerR HTH family regulatory protein 19 85 6.8E-22 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_10050 b0b1a95a94c2126446be633343144dfc 143 SMART SM00422 19 89 6.0E-9 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APT56_00800 b75c8a29c3d1ac4f8cc4f0a825290d6f 255 Pfam PF01925 Sulfite exporter TauE/SafE 13 242 2.6E-25 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_15420 16c7dc9145b227a921fe86f9d5d08dd9 102 Pfam PF09928 Predicted small integral membrane protein (DUF2160) 4 102 5.3E-38 T 11-10-2018 IPR018678 Protein of unknown function DUF2160, transmembrane APT56_05815 d710197d015199a5f1ead13de38dd192 167 Pfam PF04266 ASCH domain 6 116 2.2E-4 T 11-10-2018 IPR007374 ASCH domain APT56_21745 85d6246501d253e50622294054642fe1 199 SUPERFAMILY SSF53955 6 161 9.52E-24 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APT56_21745 85d6246501d253e50622294054642fe1 199 Gene3D G3DSA:1.10.530.10 33 192 5.0E-12 T 11-10-2018 APT56_19575 df86b85494846c1d12dabe68797177d7 410 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 8 394 9.3E-118 T 11-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 APT56_08485 b2cb741e045a719d84ca87a09556b361 272 Pfam PF01925 Sulfite exporter TauE/SafE 9 262 4.9E-55 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_11425 ad39497f694352815c802239b5010468 354 Pfam PF13387 Domain of unknown function (DUF4105) 140 290 5.4E-42 T 11-10-2018 IPR025178 Domain of unknown function DUF4105 APT56_13210 3dee7b242418528a0bbc13e81a32cafe 419 Pfam PF04143 Sulphur transport 58 411 3.2E-59 T 11-10-2018 IPR007272 Sulphur transport domain APT56_19755 4b8b7a56ab2daf127fb4c7b7520557f3 334 Pfam PF00482 Type II secretion system (T2SS), protein F 189 315 3.2E-13 T 11-10-2018 IPR018076 Type II secretion system F domain APT56_15670 8be2db9251b50427a5c0795f0894c981 227 Pfam PF07007 Lysozyme inhibitor LprI 23 95 3.5E-8 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal APT56_09140 4f82354f79838d86c2bad35b9aacd517 234 Pfam PF11254 Protein of unknown function (DUF3053) 11 227 3.5E-74 T 11-10-2018 IPR021413 Protein of unknown function DUF3053 APT56_19725 444aff4db6d44b3ab671c0d4a62d20f2 152 PIRSF PIRSF032131 3 150 5.6E-46 T 11-10-2018 IPR009562 Protein of unknown function DUF1178 APT56_19725 444aff4db6d44b3ab671c0d4a62d20f2 152 Pfam PF06676 Protein of unknown function (DUF1178) 4 144 1.8E-50 T 11-10-2018 IPR009562 Protein of unknown function DUF1178 APT56_07255 03e47deb034a20615ea1c954ab84e73a 363 Gene3D G3DSA:3.40.50.300 1 187 5.7E-21 T 11-10-2018 APT56_07255 03e47deb034a20615ea1c954ab84e73a 363 SUPERFAMILY SSF52540 45 192 2.67E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APT56_07255 03e47deb034a20615ea1c954ab84e73a 363 Pfam PF03969 AFG1-like ATPase 3 355 3.3E-128 T 11-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 APT56_22990 6876f993eb44ee5396ab44010bfeed9d 111 Pfam PF13670 Peptidase propeptide and YPEB domain 34 107 3.2E-12 T 11-10-2018 IPR025711 PepSY domain APT56_18900 490a09873a3924ac93d4570c38e87948 247 Pfam PF01925 Sulfite exporter TauE/SafE 8 235 3.8E-27 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_07580 24843606cad7866a4df84abb71205f23 104 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 86 3.4E-16 T 11-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 APT56_09350 f236cd245fe3d12db7b7c25166468c65 202 Pfam PF14317 YcxB-like protein 128 187 9.5E-11 T 11-10-2018 IPR025588 YcxB-like protein APT56_26425 9236e80ba11daae4b103fccbf95cd974 183 Pfam PF00156 Phosphoribosyl transferase domain 81 178 5.6E-7 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APT56_26425 9236e80ba11daae4b103fccbf95cd974 183 SUPERFAMILY SSF53271 5 180 4.33E-32 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APT56_26425 9236e80ba11daae4b103fccbf95cd974 183 Gene3D G3DSA:3.40.50.2020 51 182 6.2E-17 T 11-10-2018 APT56_06970 c0f5bb8ba0d87193530b2ccf5fb82f37 114 Gene3D G3DSA:3.30.70.100 1 93 6.2E-21 T 11-10-2018 APT56_06970 c0f5bb8ba0d87193530b2ccf5fb82f37 114 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 77 1.5E-11 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain APT56_06970 c0f5bb8ba0d87193530b2ccf5fb82f37 114 SUPERFAMILY SSF54909 1 99 2.24E-25 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APT56_23420 9ef6570aafe0661d789772b944308ae6 256 Pfam PF01925 Sulfite exporter TauE/SafE 19 248 7.5E-28 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_13390 e9b884b62ca18b520937777b1b421570 263 TIGRFAM TIGR03950 sidero_Fe_reduc: siderophore ferric iron reductase, AHA_1954 family 23 245 1.2E-58 T 11-10-2018 IPR023998 Siderophore ferric iron reductase, AHA1954 family APT56_03675 8258a3b1534800e2b7286cce378f0430 135 Pfam PF09474 Type III secretion system YscX (type_III_YscX) 10 116 3.7E-22 T 11-10-2018 IPR012672 Type III secretion system YscX APT56_03920 937123c5181fcf1bbc6a3e05d7418de4 155 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 32.269 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 APT56_03920 937123c5181fcf1bbc6a3e05d7418de4 155 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 145 6.2E-50 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 APT56_12200 db858b5b1d1e4a0792034ca0ddbd2172 162 Pfam PF02674 Colicin V production protein 4 142 7.7E-36 T 11-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 APT56_24825 523a8fb2d08aceb787b06bfd92ce1235 1284 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 951 1280 1.7E-32 T 11-10-2018 IPR007452 Translocation and assembly module TamB APT56_21290 1665b116e94765253a0f2923fd31ea0c 296 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 279 5.2E-31 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_08100 0fc858da1cd80d5bea5a0467dcb346e6 279 Pfam PF01163 RIO1 family 86 177 6.5E-6 T 11-10-2018 APT56_08100 0fc858da1cd80d5bea5a0467dcb346e6 279 SUPERFAMILY SSF56112 11 239 5.62E-14 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APT56_24680 c28d523881ed7b88535a61fcbcbed4be 367 Pfam PF00953 Glycosyl transferase family 4 76 230 9.6E-28 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 APT56_04935 d053e7e305bda08af604f5c11b5818d4 174 Gene3D G3DSA:2.30.110.10 6 169 6.4E-48 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APT56_04935 d053e7e305bda08af604f5c11b5818d4 174 Pfam PF01613 Flavin reductase like domain 18 160 2.4E-34 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_04935 d053e7e305bda08af604f5c11b5818d4 174 SUPERFAMILY SSF50475 9 160 5.4E-46 T 11-10-2018 APT56_04935 d053e7e305bda08af604f5c11b5818d4 174 SMART SM00903 17 162 2.2E-57 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APT56_20900 863c801b7b4cf90e68733feaeb9bcccf 174 Pfam PF09335 SNARE associated Golgi protein 43 166 3.6E-12 T 11-10-2018 IPR032816 SNARE associated Golgi protein APT56_01095 51a4f5b24de4a5bdd32157fe8f3b5e25 462 PIRSF PIRSF002746 4 460 1.5E-145 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 APT56_01095 51a4f5b24de4a5bdd32157fe8f3b5e25 462 Pfam PF02447 GntP family permease 9 457 1.6E-124 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 APT56_01095 51a4f5b24de4a5bdd32157fe8f3b5e25 462 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 8 458 4.9E-119 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 APT56_12330 fb8ee8a753d3b5aa5788578d1eef27ec 159 Pfam PF11008 Protein of unknown function (DUF2846) 26 116 5.8E-10 T 11-10-2018 IPR022548 Domain of unknown function DUF2846 APT56_04410 6bda9dc32426fe8b302877c100a67808 178 Gene3D G3DSA:2.60.120.10 46 170 5.3E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APT56_04410 6bda9dc32426fe8b302877c100a67808 178 SUPERFAMILY SSF51182 25 162 2.94E-34 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APT56_04410 6bda9dc32426fe8b302877c100a67808 178 Pfam PF05995 Cysteine dioxygenase type I 56 157 1.3E-11 T 11-10-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 APT56_24035 edf8d78afbab7e080fcf2e0894bb4534 255 Pfam PF06966 Protein of unknown function (DUF1295) 21 245 4.3E-66 T 11-10-2018 IPR010721 Protein of unknown function DUF1295 APT56_24035 edf8d78afbab7e080fcf2e0894bb4534 255 Gene3D G3DSA:1.20.120.1630 59 252 6.5E-14 T 11-10-2018 APT56_10640 4f324295c76fba0fe85cfc3eb47d82ec 238 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 22 234 1.6E-70 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal APT56_06120 96f7660341863e6dca2134fc34ede451 184 Pfam PF14081 Domain of unknown function (DUF4262) 28 151 1.3E-33 T 11-10-2018 IPR025358 Protein of unknown function DUF4262 APT56_23810 4b3b5049188ca56f16b5c6505b2eb4dc 142 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 9 140 1.1E-10 T 11-10-2018 IPR009936 Protein of unknown function DUF1468 APT56_08210 02459e39d549effb86addf6cbad6af21 299 Pfam PF04381 Putative exonuclease, RdgC 1 296 1.5E-119 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 APT56_08210 02459e39d549effb86addf6cbad6af21 299 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 298 36.799 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 APT56_13715 b04fe2fa32e90d345dfa778782c59ad5 118 Pfam PF04120 Low affinity iron permease 1 114 7.6E-45 T 11-10-2018 IPR007251 Low affinity iron permease, Fet4 GO:0055085 APT56_05715 e4d4fb52427851155b1c0a7cf70aceef 91 Pfam PF13937 Domain of unknown function (DUF4212) 14 83 2.5E-24 T 11-10-2018 IPR019886 Sodium symporter small subunit, predicted APT56_05715 e4d4fb52427851155b1c0a7cf70aceef 91 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 14 83 8.0E-27 T 11-10-2018 IPR019886 Sodium symporter small subunit, predicted APT56_27050 d67ce283e0609b85c3e33022f1ffe02f 330 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 325 3.8E-102 T 11-10-2018 IPR007296 Domain of unknown function DUF403 APT56_09630 d761a2de63413c3174ab28d2ab4b6294 459 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 16 61 1.0E-6 T 11-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal APT56_05710 1f12d820b80bc2598c0eca1e8e470a56 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 6 29 2.4E-11 T 11-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 APT56_05710 1f12d820b80bc2598c0eca1e8e470a56 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 29 3.1E-10 T 11-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 APT56_02535 edfb7b68747e8f7d6f1034f07659dba0 212 Pfam PF03458 UPF0126 domain 13 86 1.3E-17 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 APT56_02535 edfb7b68747e8f7d6f1034f07659dba0 212 Pfam PF03458 UPF0126 domain 98 169 5.1E-20 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 APT56_05855 8e99d32a741bae1857e01e317d5656e1 414 Pfam PF00999 Sodium/hydrogen exchanger family 5 367 1.3E-58 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APT56_05855 8e99d32a741bae1857e01e317d5656e1 414 Gene3D G3DSA:1.20.1530.20 1 376 1.3E-77 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APT56_10285 45b892604e7bd7ffc67897a3bc278f7d 254 SMART SM01040 13 100 1.3E-35 T 11-10-2018 IPR003497 BRO N-terminal domain APT56_10285 45b892604e7bd7ffc67897a3bc278f7d 254 Pfam PF02498 BRO family, N-terminal domain 13 100 6.6E-24 T 11-10-2018 IPR003497 BRO N-terminal domain APT56_00660 19c4f417c5c713ac16bfdc079a4751d1 674 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 139 588 5.5E-115 T 11-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit APT56_00660 19c4f417c5c713ac16bfdc079a4751d1 674 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 29 664 2.9E-212 T 11-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ APT56_10215 242a93fdea6caa88584d7a14e3e916a7 820 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 264 334 3.5E-8 T 11-10-2018 IPR013491 Caudovirus, tape measure, N-terminal APT56_06200 de8bc3d8f4e35a0703a9599dbf0cfa76 117 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 11 116 6.7E-9 T 11-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like APT56_06200 de8bc3d8f4e35a0703a9599dbf0cfa76 117 Gene3D G3DSA:3.10.490.10 2 117 1.5E-18 T 11-10-2018 APT56_06200 de8bc3d8f4e35a0703a9599dbf0cfa76 117 SUPERFAMILY SSF110857 8 116 1.31E-11 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily APT56_25515 6c167ffd4b4e0fee880bcf2737dd3d23 314 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 298 6.7E-40 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_10125 2a9bb91833289fea74b0431bfa8befab 164 SUPERFAMILY SSF103084 38 149 5.36E-18 T 11-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 APT56_10125 2a9bb91833289fea74b0431bfa8befab 164 Pfam PF05866 Endodeoxyribonuclease RusA 11 148 3.0E-30 T 11-10-2018 IPR008822 Holliday junction resolvase RusA-like GO:0000287|GO:0006281|GO:0006310 APT56_02500 9e3ff4106e6e62d118c768b7d2aee5f7 391 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 9 387 1.6E-127 T 11-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 APT56_05375 70ef6696cd2678219038e2ccb1933f48 70 Gene3D G3DSA:2.60.260.40 7 61 7.5E-12 T 11-10-2018 APT56_05375 70ef6696cd2678219038e2ccb1933f48 70 Pfam PF10276 Zinc-finger domain 23 58 1.3E-9 T 11-10-2018 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APT56_15410 59038376dc816d4f40ff324da1cfcc47 101 Pfam PF13663 Domain of unknown function (DUF4148) 6 59 1.6E-6 T 11-10-2018 IPR025421 Protein of unknown function DUF4148 APT56_16065 3910d6ea0b39a25791d1eba15014b6ea 295 Pfam PF11828 Protein of unknown function (DUF3348) 1 293 1.5E-92 T 11-10-2018 IPR021783 Protein of unknown function DUF3348 APT56_14660 11e0c3cea6c4d43b4580ea1a3daa3fa4 201 Pfam PF06821 Serine hydrolase 6 171 2.6E-65 T 11-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 APT56_14660 11e0c3cea6c4d43b4580ea1a3daa3fa4 201 SUPERFAMILY SSF53474 6 171 1.49E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_14660 11e0c3cea6c4d43b4580ea1a3daa3fa4 201 Gene3D G3DSA:3.40.50.1820 2 179 1.4E-54 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APT56_15285 499900ed46c1e0aefe4fb6805fae3d27 114 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 109 1.4E-27 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like APT56_23665 293f59ecd89b0f58b9f1a53b439205a7 131 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 24 120 4.4E-34 T 11-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 APT56_23665 293f59ecd89b0f58b9f1a53b439205a7 131 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 31 104 8.9E-18 T 11-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 APT56_25845 9fad9133ad247982a1cacc8dfb732136 424 Pfam PF02653 Branched-chain amino acid transport system / permease component 37 303 4.2E-27 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_22380 f66168db4331c999fa0e3c1c08e2e0c4 180 Gene3D G3DSA:2.40.33.20 1 180 3.7E-32 T 11-10-2018 APT56_22380 f66168db4331c999fa0e3c1c08e2e0c4 180 SUPERFAMILY SSF50800 3 169 2.09E-38 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily APT56_26975 36f56d4b566803f7a366cb08b942b87a 389 SUPERFAMILY SSF52096 47 185 1.59E-6 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APT56_10170 b72e8f45bf5f626441f82ea3165b449a 319 Pfam PF09950 Uncharacterized protein conserved in bacteria (DUF2184) 80 318 3.0E-72 T 11-10-2018 IPR020049 Protein of unknown function DUF2184 APT56_10170 b72e8f45bf5f626441f82ea3165b449a 319 PIRSF PIRSF029202 25 318 6.2E-52 T 11-10-2018 IPR020049 Protein of unknown function DUF2184 APT56_08360 2ac38273a31679e238b5908986426d01 43 Pfam PF08085 Entericidin EcnA/B family 21 41 2.1E-10 T 11-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 APT56_09665 6ca8d992ac0393936dc999afadfaa42b 302 Pfam PF00482 Type II secretion system (T2SS), protein F 164 289 5.9E-15 T 11-10-2018 IPR018076 Type II secretion system F domain APT56_05200 cacc402b34b344b65231bb92837d8cbb 74 ProDom PD052686 LIPOPROTEIN INDUCIBLE OSMOTICALLY B PRECURSOR SIGNAL MEMBRANE PALMITATE TRANSMEMBRANE SURFACE 8 35 9.0E-5 T 11-10-2018 APT56_05200 cacc402b34b344b65231bb92837d8cbb 74 Pfam PF05433 Glycine zipper 2TM domain 34 72 1.8E-7 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 APT56_03680 fd1e97234b4ff82771a5744b17d4aa33 126 SUPERFAMILY SSF69635 4 122 7.46E-10 T 11-10-2018 APT56_03680 fd1e97234b4ff82771a5744b17d4aa33 126 Gene3D G3DSA:3.30.1460.10 2 124 1.9E-9 T 11-10-2018 APT56_19730 e7868445e3371ed0afb3f132ca4098ab 235 Pfam PF11180 Protein of unknown function (DUF2968) 43 222 3.9E-68 T 11-10-2018 IPR021350 Protein of unknown function DUF2968 APT56_13785 35cb2f70e4e5ebd0c815b9ecf24ef609 266 SUPERFAMILY SSF141523 83 197 5.49E-5 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like APT56_17145 ea673fc44f77062e4bb92587ee4af893 143 Pfam PF08818 Domain of unknown function (DU1801) 31 122 4.6E-19 T 11-10-2018 IPR014922 Domain of unknown function DUF1801 APT56_17145 ea673fc44f77062e4bb92587ee4af893 143 SUPERFAMILY SSF159888 21 129 2.62E-17 T 11-10-2018 APT56_20640 992de7c81f82b55857761fc5bae51d57 223 Pfam PF06551 Protein of unknown function (DUF1120) 28 93 1.0E-12 T 11-10-2018 IPR010546 Protein of unknown function DUF1120 APT56_11440 219283ad65442543e62c994a92d656dc 254 Pfam PF01925 Sulfite exporter TauE/SafE 10 246 5.0E-33 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_15855 f45c023124611488e47462eaf00f6330 391 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 19 377 4.0E-111 T 11-10-2018 IPR010640 Low temperature requirement A APT56_18485 2ccf9a9253a628297b99dc7368617aa6 129 Pfam PF07849 Protein of unknown function (DUF1641) 80 117 1.0E-6 T 11-10-2018 IPR012440 Protein of unknown function DUF1641 APT56_27495 a6444ddb8d616177e17bb86e43db3d54 136 Pfam PF06476 Protein of unknown function (DUF1090) 25 127 1.8E-33 T 11-10-2018 IPR009468 Protein of unknown function DUF1090 APT56_00605 2353b8cf94477a1e0890e4727d5dbfcb 306 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 1 284 3.0E-62 T 11-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 APT56_18245 2f0f7c8e614508be542b8fd72521da4f 205 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 186 3.1E-28 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APT56_23015 dc5c9413fd4c82d2082ba1240e315525 520 Pfam PF08811 Protein of unknown function (DUF1800) 26 517 1.1E-85 T 11-10-2018 IPR014917 Protein of unknown function DUF1800 APT56_05485 670a5cd4a8e1fe974f6cdfb513ec1381 196 Pfam PF11161 Protein of unknown function (DUF2946) 1 194 1.5E-59 T 11-10-2018 IPR021332 Protein of unknown function DUF2944 APT56_17965 b2d9249482a50e149b7a62429538268d 402 Pfam PF01610 Transposase 293 401 4.6E-8 T 11-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain APT56_17965 b2d9249482a50e149b7a62429538268d 402 Pfam PF00487 Fatty acid desaturase 17 219 2.0E-11 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 APT56_12130 f98b54fb4082f2d7248c72f270e8053d 265 Gene3D G3DSA:2.40.10.220 126 218 1.8E-14 T 11-10-2018 APT56_07290 163f722724cc48f6bc101fdd82635370 107 Pfam PF11804 Protein of unknown function (DUF3325) 3 102 4.8E-34 T 11-10-2018 IPR021762 Protein of unknown function DUF3325 APT56_22060 fdc5a8aee502ecad243179b36d1e8a52 84 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 5 59 2.0E-7 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APT56_22060 fdc5a8aee502ecad243179b36d1e8a52 84 SUPERFAMILY SSF143120 4 74 1.57E-10 T 11-10-2018 IPR036165 YefM-like superfamily APT56_11395 e1e5bc29c41360537d301fb8edc2c7d7 126 Pfam PF13788 Domain of unknown function (DUF4180) 12 121 5.1E-41 T 11-10-2018 IPR025438 Domain of unknown function DUF4180 APT56_26015 7d104bbf0a9ac0ba318f5012b178c1ad 300 Pfam PF02653 Branched-chain amino acid transport system / permease component 14 283 3.0E-33 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_14970 3b5173c3ddb28600e0e21c6354e5840b 324 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 293 9.5E-42 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 APT56_14970 3b5173c3ddb28600e0e21c6354e5840b 324 SUPERFAMILY SSF53850 106 282 2.35E-6 T 11-10-2018 APT56_14970 3b5173c3ddb28600e0e21c6354e5840b 324 Gene3D G3DSA:3.40.190.170 24 324 2.2E-111 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily APT56_01775 d89cba71b9670d6fede81de4de70ae5c 245 Pfam PF01925 Sulfite exporter TauE/SafE 15 234 4.9E-16 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_19430 032b94b1d59d8214700a76450331ecb2 504 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 439 7.1E-143 T 11-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane APT56_00735 e7b7c52350563c7d4fc6688ff62417e3 125 Pfam PF12823 Domain of unknown function (DUF3817) 32 116 6.6E-21 T 11-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane APT56_00735 e7b7c52350563c7d4fc6688ff62417e3 125 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 33 115 1.7E-26 T 11-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane APT56_14305 4a03f1273bca21ecdb89f1d72b5f9f6d 392 Pfam PF03929 PepSY-associated TM region 16 371 4.7E-53 T 11-10-2018 IPR005625 PepSY-associated TM protein APT56_08565 9b1cf30a14064bef90b3302e432948db 146 Pfam PF11681 Protein of unknown function (DUF3277) 1 144 1.1E-63 T 11-10-2018 IPR021695 Bacteriophage rv5, Orf52 APT56_23910 39298c7e5a0c28094b6d7430f912638b 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 10 93 7.9E-20 T 11-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 APT56_18355 23bea378c88b44ca8928b667ec8e424e 257 Pfam PF01925 Sulfite exporter TauE/SafE 10 251 1.1E-43 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APT56_13420 5379ef07ad875b424baca8c5766ca86e 213 Pfam PF09335 SNARE associated Golgi protein 47 170 5.9E-21 T 11-10-2018 IPR032816 SNARE associated Golgi protein APT56_19440 b61e966a892caea798aca9da19e9dfad 419 Pfam PF07399 Putative Na+/H+ antiporter 6 419 2.1E-174 T 11-10-2018 IPR009978 Putative Na+/H+ antiporter APT56_24590 44123af627d6d6da8104ca3b9e04366b 149 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 12 140 2.8E-28 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ APT56_00540 dfa4d230916fd4a3e02a085a2909804d 357 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 342 1.1E-36 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APT56_19995 b49f73caabbac027da79259d10bd0e20 534 SUPERFAMILY SSF75005 294 454 1.44E-11 T 11-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily APT56_13615 1f8c8aa90c3a98d107c39b183d97125e 132 Pfam PF11162 Protein of unknown function (DUF2946) 11 129 2.3E-5 T 11-10-2018 IPR021333 Protein of unknown function DUF2946 APT56_15740 5e6029c82369fea138f87fd0c0d0f0a3 183 SUPERFAMILY SSF81342 8 183 5.34E-34 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APT56_15740 5e6029c82369fea138f87fd0c0d0f0a3 183 Pfam PF01292 Prokaryotic cytochrome b561 10 181 1.5E-24 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APT56_05650 27a94088807537c027f9304d8cd60c0c 141 Pfam PF08897 Domain of unknown function (DUF1841) 5 136 2.4E-57 T 11-10-2018 IPR014993 Protein of unknown function DUF1841 APT56_02470 d9c62d95d1f3145105b9c341962d8deb 299 Pfam PF03547 Membrane transport protein 152 291 1.2E-13 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APT56_02470 d9c62d95d1f3145105b9c341962d8deb 299 Pfam PF03547 Membrane transport protein 37 151 1.2E-7 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APT56_05980 bc6888e748939b74d57d1d601559760b 349 Pfam PF06271 RDD family 41 195 2.1E-10 T 11-10-2018 IPR010432 RDD APT56_15485 17fa337645d005f21e5bf8d08e450912 381 Pfam PF12698 ABC-2 family transporter protein 33 373 2.2E-48 T 11-10-2018 APT56_12715 94fbe9e699e424e888d1be1cb3d7e6f0 695 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 467 595 8.7E-36 T 11-10-2018 IPR025299 CstA, C-terminal domain APT56_12715 94fbe9e699e424e888d1be1cb3d7e6f0 695 Pfam PF02554 Carbon starvation protein CstA 36 412 1.6E-173 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 APT56_01340 24a49c844e5ad3282d9e7d3ce6b94f6c 175 Pfam PF02417 Chromate transporter 8 169 2.8E-37 T 11-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 APT56_09620 d82636884ab8649895e0ff6a853571b0 393 Pfam PF01757 Acyltransferase family 22 369 1.1E-29 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 APT56_14240 41e07142be085c88f31821ec13e000f1 256 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 65 218 5.5E-36 T 11-10-2018 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 APT56_21260 05092145324bb03653c8c2bddcabe30b 128 Pfam PF03994 Domain of Unknown Function (DUF350) 75 127 1.4E-8 T 11-10-2018 IPR007140 Protein of unknown function DUF350 APT56_21260 05092145324bb03653c8c2bddcabe30b 128 Pfam PF03994 Domain of Unknown Function (DUF350) 10 63 1.5E-10 T 11-10-2018 IPR007140 Protein of unknown function DUF350 APT56_27450 654f6d8ee2a9f8ebc4ab64214ae69af8 427 Pfam PF07399 Putative Na+/H+ antiporter 5 425 4.7E-180 T 11-10-2018 IPR009978 Putative Na+/H+ antiporter APT56_07480 55598d3ce814ece0c51ed124906e1376 332 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 39 298 1.7E-67 T 11-10-2018 IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain APT56_00765 7c7ced9d66a0f653c992a08637c0be5b 128 Pfam PF06803 Protein of unknown function (DUF1232) 34 69 7.4E-13 T 11-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 APT56_23730 d2f6b5115b5e4e9aa62afacdb1e9b536 470 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 47 450 9.8E-143 T 11-10-2018 IPR018721 Protein of unknown function DUF2252 APT56_26965 786a8b3e0c0f7cb6e469d85cd4e35e71 133 Pfam PF04343 Protein of unknown function, DUF488 8 117 1.9E-29 T 11-10-2018 IPR007438 Protein of unknown function DUF488 APT56_03330 a9cc2b010988fa275104c4ff4daba40b 392 Pfam PF04914 DltD protein 73 390 8.1E-58 T 11-10-2018 IPR006998 DltD APT56_11355 b6cd6ae9a9f7b532758d0d8c37923aef 150 Pfam PF16310 Domian of unknown function (DUF4952) 30 100 1.3E-20 T 11-10-2018 IPR032537 Protein of unknown function DUF4952