CVS48_00015 SM00028 Tetratricopeptide repeats CVS48_00045 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_00045 SM00322 K homology RNA-binding domain CVS48_00050 SM01387 CVS48_00050 CVS48_00130 SM00903 Flavin reductase like domain CVS48_00145 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_00155 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS48_00195 SM00382 ATPases associated with a variety of cellular activities CVS48_00205 SM01119 CVS48_00205 CVS48_00225 SM00382 ATPases associated with a variety of cellular activities CVS48_00230 SM00382 ATPases associated with a variety of cellular activities CVS48_00255 SM00382 ATPases associated with a variety of cellular activities CVS48_00255 SM00843 CVS48_00255 CVS48_00265 SM00463 Small MutS-related domain CVS48_00315 SM00387 Histidine kinase-like ATPases CVS48_00315 SM00388 His Kinase A (phosphoacceptor) domain CVS48_00320 SM00448 cheY-homologous receiver domain CVS48_00320 SM00862 Transcriptional regulatory protein, C terminal CVS48_00335 SM01130 CVS48_00335 CVS48_00340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_00340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_00340 SM01049 CVS48_00340 CVS48_00350 SM01329 CVS48_00350 CVS48_00370 SM00382 ATPases associated with a variety of cellular activities CVS48_00410 SM00271 DnaJ molecular chaperone homology domain CVS48_00490 SM00382 ATPases associated with a variety of cellular activities CVS48_00530 SM00448 cheY-homologous receiver domain CVS48_00530 SM00862 Transcriptional regulatory protein, C terminal CVS48_00535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_00535 SM00387 Histidine kinase-like ATPases CVS48_00535 SM00388 His Kinase A (phosphoacceptor) domain CVS48_00545 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS48_00555 SM00226 Low molecular weight phosphatase family CVS48_00615 SM00953 CVS48_00615 CVS48_00715 SM00382 ATPases associated with a variety of cellular activities CVS48_00780 SM00487 DEAD-like helicases superfamily CVS48_00865 SM00422 helix_turn_helix, mercury resistance CVS48_00920 SM00422 helix_turn_helix, mercury resistance CVS48_00935 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CVS48_00935 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CVS48_00935 SM00493 CVS48_00935 CVS48_01000 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CVS48_01000 SM00495 Chitin-binding domain type 3 CVS48_01005 SM00495 Chitin-binding domain type 3 CVS48_01010 SM00495 Chitin-binding domain type 3 CVS48_01015 SM00387 Histidine kinase-like ATPases CVS48_01020 SM00448 cheY-homologous receiver domain CVS48_01020 SM00862 Transcriptional regulatory protein, C terminal CVS48_01040 SM00965 Secretin and TonB N terminus short domain CVS48_01100 SM00670 Large family of predicted nucleotide-binding domains CVS48_01130 SM00342 helix_turn_helix, arabinose operon control protein CVS48_01165 SM00989 CVS48_01165 CVS48_01210 SM00822 CVS48_01210 CVS48_01230 SM00881 CoA binding domain CVS48_01250 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_01305 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_01310 SM00852 Probable molybdopterin binding domain CVS48_01325 SM00487 DEAD-like helicases superfamily CVS48_01325 SM00490 helicase superfamily c-terminal domain CVS48_01375 SM00831 Cation transporter/ATPase, N-terminus CVS48_01390 SM01011 Aminopeptidase P, N-terminal domain CVS48_01415 SM00798 AICARFT/IMPCHase bienzyme CVS48_01415 SM00851 MGS-like domain CVS48_01425 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CVS48_01440 SM00382 ATPases associated with a variety of cellular activities CVS48_01445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_01445 SM00387 Histidine kinase-like ATPases CVS48_01450 SM00448 cheY-homologous receiver domain CVS48_01450 SM00862 Transcriptional regulatory protein, C terminal CVS48_01460 SM00341 Helicase and RNase D C-terminal CVS48_01460 SM00487 DEAD-like helicases superfamily CVS48_01460 SM00490 helicase superfamily c-terminal domain CVS48_01460 SM00956 CVS48_01460 CVS48_01515 SM00382 ATPases associated with a variety of cellular activities CVS48_01530 SM00382 ATPases associated with a variety of cellular activities CVS48_01535 SM00382 ATPases associated with a variety of cellular activities CVS48_01555 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_01605 SM00822 CVS48_01605 CVS48_01620 SM00382 ATPases associated with a variety of cellular activities CVS48_01625 SM00382 ATPases associated with a variety of cellular activities CVS48_01650 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_01655 SM00382 ATPases associated with a variety of cellular activities CVS48_01705 SM00382 ATPases associated with a variety of cellular activities CVS48_01730 SM00903 Flavin reductase like domain CVS48_01800 SM00646 CVS48_01800 CVS48_01810 SM00853 MutL C terminal dimerisation domain CVS48_01810 SM01340 CVS48_01810 CVS48_01825 SM00382 ATPases associated with a variety of cellular activities CVS48_01920 SM00822 CVS48_01920 CVS48_01965 SM00563 Phosphate acyltransferases CVS48_02005 SM00650 Ribosomal RNA adenine dimethylases CVS48_02045 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_02085 SM00382 ATPases associated with a variety of cellular activities CVS48_02085 SM01086 C-terminal, D2-small domain, of ClpB protein CVS48_02220 SM00244 prohibitin homologues CVS48_02240 SM00822 CVS48_02240 CVS48_02250 SM00267 diguanylate cyclase CVS48_02275 SM00342 helix_turn_helix, arabinose operon control protein CVS48_02295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_02295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_02300 SM00994 ClpX C4-type zinc finger CVS48_02305 SM00869 Autotransporter beta-domain CVS48_02310 SM00869 Autotransporter beta-domain CVS48_02330 SM00382 ATPases associated with a variety of cellular activities CVS48_02330 SM00930 CVS48_02330 CVS48_02375 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS48_02375 SM00924 MgtE intracellular N domain CVS48_02390 SM00344 helix_turn_helix ASNC type CVS48_02410 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_02410 SM00895 CVS48_02410 CVS48_02425 SM00957 SecA DEAD-like domain CVS48_02425 SM00958 SecA preprotein cross-linking domain CVS48_02445 SM00864 Tubulin/FtsZ family, GTPase domain CVS48_02445 SM00865 Tubulin/FtsZ family, C-terminal domain CVS48_02450 SM00842 Cell division protein FtsA CVS48_02460 SM01209 CVS48_02460 CVS48_02520 SM00382 ATPases associated with a variety of cellular activities CVS48_02535 SM00151 SWI complex, BAF60b domains CVS48_02565 SM00344 helix_turn_helix ASNC type CVS48_02660 SM00448 cheY-homologous receiver domain CVS48_02660 SM00862 Transcriptional regulatory protein, C terminal CVS48_02715 SM00382 ATPases associated with a variety of cellular activities CVS48_02730 SM00838 Elongation factor G C-terminus CVS48_02730 SM00889 Elongation factor G, domain IV CVS48_02745 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_02765 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_02765 SM00895 CVS48_02765 CVS48_02825 SM00479 CVS48_02825 CVS48_02850 SM00849 Metallo-beta-lactamase superfamily CVS48_02855 SM00257 Lysin motif CVS48_02910 SM00421 helix_turn_helix, Lux Regulon CVS48_02910 SM00448 cheY-homologous receiver domain CVS48_02945 SM00763 PrkA AAA domain CVS48_02960 SM00342 helix_turn_helix, arabinose operon control protein CVS48_02980 SM00363 S4 RNA-binding domain CVS48_03005 SM00859 Semialdehyde dehydrogenase, NAD binding domain CVS48_03020 SM00382 ATPases associated with a variety of cellular activities CVS48_03025 SM00382 ATPases associated with a variety of cellular activities CVS48_03070 SM00382 ATPases associated with a variety of cellular activities CVS48_03105 SM00344 helix_turn_helix ASNC type CVS48_03180 SM00878 Biotin carboxylase C-terminal domain CVS48_03210 SM00955 CVS48_03210 CVS48_03215 SM00448 cheY-homologous receiver domain CVS48_03215 SM00862 Transcriptional regulatory protein, C terminal CVS48_03220 SM00387 Histidine kinase-like ATPases CVS48_03220 SM00388 His Kinase A (phosphoacceptor) domain CVS48_03235 SM00382 ATPases associated with a variety of cellular activities CVS48_03270 SM00382 ATPases associated with a variety of cellular activities CVS48_03285 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_03305 SM00563 Phosphate acyltransferases CVS48_03325 SM00732 Likely ribonuclease with RNase H fold. CVS48_03395 SM00342 helix_turn_helix, arabinose operon control protein CVS48_03425 SM00822 CVS48_03425 CVS48_03435 SM00052 Putative diguanylate phosphodiesterase CVS48_03435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS48_03435 SM00091 PAS domain CVS48_03435 SM00267 diguanylate cyclase CVS48_03440 SM00267 diguanylate cyclase CVS48_03455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_03455 SM00331 Sigma factor PP2C-like phosphatases CVS48_03460 SM00382 ATPases associated with a variety of cellular activities CVS48_03465 SM00382 ATPases associated with a variety of cellular activities CVS48_03485 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_03575 SM00421 helix_turn_helix, Lux Regulon CVS48_03615 SM00478 endonuclease III CVS48_03620 SM00530 Helix-turn-helix XRE-family like proteins CVS48_03635 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS48_03640 SM00382 ATPases associated with a variety of cellular activities CVS48_03655 SM00829 Enoylreductase CVS48_03665 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_03670 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_03670 SM00895 CVS48_03670 CVS48_03680 SM01018 B12 binding domain CVS48_03740 SM00978 CVS48_03740 CVS48_03750 SM00448 cheY-homologous receiver domain CVS48_03750 SM00862 Transcriptional regulatory protein, C terminal CVS48_03755 SM00387 Histidine kinase-like ATPases CVS48_03755 SM00388 His Kinase A (phosphoacceptor) domain CVS48_03760 SM00448 cheY-homologous receiver domain CVS48_03760 SM00862 Transcriptional regulatory protein, C terminal CVS48_03765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_03765 SM00387 Histidine kinase-like ATPases CVS48_03765 SM00388 His Kinase A (phosphoacceptor) domain CVS48_03805 SM00796 Allophanate hydrolase subunit 1 CVS48_03810 SM00797 Allophanate hydrolase subunit 2 CVS48_03815 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_03815 SM00895 CVS48_03815 CVS48_03855 SM00421 helix_turn_helix, Lux Regulon CVS48_03900 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_03900 SM00895 CVS48_03900 CVS48_03905 SM00382 ATPases associated with a variety of cellular activities CVS48_03910 SM00382 ATPases associated with a variety of cellular activities CVS48_04020 SM00382 ATPases associated with a variety of cellular activities CVS48_04025 SM00382 ATPases associated with a variety of cellular activities CVS48_04060 SM00342 helix_turn_helix, arabinose operon control protein CVS48_04070 SM00487 DEAD-like helicases superfamily CVS48_04070 SM00490 helicase superfamily c-terminal domain CVS48_04090 SM00382 ATPases associated with a variety of cellular activities CVS48_04170 SM00882 Coenzyme A transferase CVS48_04175 SM00882 Coenzyme A transferase CVS48_04190 SM00905 Dihydroneopterin aldolase CVS48_04215 SM00925 MltA specific insert domain CVS48_04255 SM00382 ATPases associated with a variety of cellular activities CVS48_04290 SM00460 Transglutaminase/protease-like homologues CVS48_04330 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CVS48_04400 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_04400 SM00895 CVS48_04400 CVS48_04420 SM01236 CVS48_04420 CVS48_04445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_04445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_04480 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_04480 SM00866 CVS48_04480 CVS48_04490 SM00829 Enoylreductase CVS48_04530 SM00052 Putative diguanylate phosphodiesterase CVS48_04530 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS48_04530 SM00091 PAS domain CVS48_04530 SM00267 diguanylate cyclase CVS48_04545 SM00344 helix_turn_helix ASNC type CVS48_04590 SM00052 Putative diguanylate phosphodiesterase CVS48_04660 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS48_04660 SM00850 LytTr DNA-binding domain CVS48_04695 SM00656 CVS48_04695 CVS48_04735 SM00984 UDP binding domain CVS48_04785 SM00834 Putative regulatory protein CVS48_04795 SM00382 ATPases associated with a variety of cellular activities CVS48_04820 SM00387 Histidine kinase-like ATPases CVS48_04820 SM00388 His Kinase A (phosphoacceptor) domain CVS48_04820 SM00448 cheY-homologous receiver domain CVS48_04825 SM00421 helix_turn_helix, Lux Regulon CVS48_04825 SM00448 cheY-homologous receiver domain CVS48_04875 SM00344 helix_turn_helix ASNC type CVS48_04895 SM00984 UDP binding domain CVS48_05050 SM00382 ATPases associated with a variety of cellular activities CVS48_05075 SM00382 ATPases associated with a variety of cellular activities CVS48_05160 SM00530 Helix-turn-helix XRE-family like proteins CVS48_05165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS48_05225 SM00382 ATPases associated with a variety of cellular activities CVS48_05285 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_05315 SM00342 helix_turn_helix, arabinose operon control protein CVS48_05345 SM00382 ATPases associated with a variety of cellular activities CVS48_05360 SM00487 DEAD-like helicases superfamily CVS48_05360 SM00490 helicase superfamily c-terminal domain CVS48_05400 SM00917 LeuA allosteric (dimerisation) domain CVS48_05410 SM00354 helix_turn _helix lactose operon repressor CVS48_05420 SM00382 ATPases associated with a variety of cellular activities CVS48_05450 SM00836 DALR anticodon binding domain CVS48_05450 SM01016 Arginyl tRNA synthetase N terminal dom CVS48_05490 SM00849 Metallo-beta-lactamase superfamily CVS48_05495 SM00422 helix_turn_helix, mercury resistance CVS48_05525 SM00878 Biotin carboxylase C-terminal domain CVS48_05525 SM01209 CVS48_05525 CVS48_05560 SM00387 Histidine kinase-like ATPases CVS48_05560 SM00388 His Kinase A (phosphoacceptor) domain CVS48_05565 SM00448 cheY-homologous receiver domain CVS48_05570 SM00138 Methyltransferase, chemotaxis proteins CVS48_05575 SM00344 helix_turn_helix ASNC type CVS48_05590 SM00342 helix_turn_helix, arabinose operon control protein CVS48_05600 SM00829 Enoylreductase CVS48_05620 SM01022 CVS48_05620 CVS48_05635 SM00342 helix_turn_helix, arabinose operon control protein CVS48_05655 SM00530 Helix-turn-helix XRE-family like proteins CVS48_05675 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_05690 SM00382 ATPases associated with a variety of cellular activities CVS48_05695 SM01119 CVS48_05695 CVS48_05725 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CVS48_05725 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CVS48_05725 SM00493 CVS48_05725 CVS48_05735 SM00382 ATPases associated with a variety of cellular activities CVS48_05745 SM00822 CVS48_05745 CVS48_05755 SM00344 helix_turn_helix ASNC type CVS48_05765 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain CVS48_05790 SM00903 Flavin reductase like domain CVS48_05805 SM00450 Rhodanese Homology Domain CVS48_05815 SM00382 ATPases associated with a variety of cellular activities CVS48_05870 SM00382 ATPases associated with a variety of cellular activities CVS48_05880 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_05880 SM00866 CVS48_05880 CVS48_05905 SM00342 helix_turn_helix, arabinose operon control protein CVS48_05905 SM00871 Bacterial transcription activator, effector binding domain CVS48_05945 SM00382 ATPases associated with a variety of cellular activities CVS48_05950 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_05980 SM00382 ATPases associated with a variety of cellular activities CVS48_05995 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_06025 SM00387 Histidine kinase-like ATPases CVS48_06025 SM00433 TopoisomeraseII CVS48_06030 SM00480 DNA polymerase III beta subunit CVS48_06035 SM00382 ATPases associated with a variety of cellular activities CVS48_06035 SM00760 Bacterial dnaA protein helix-turn-helix domain CVS48_06050 SM01234 CVS48_06050 CVS48_06060 SM01060 CVS48_06060 CVS48_06070 SM00382 ATPases associated with a variety of cellular activities CVS48_06075 SM00382 ATPases associated with a variety of cellular activities CVS48_06110 SM00448 cheY-homologous receiver domain CVS48_06110 SM00862 Transcriptional regulatory protein, C terminal CVS48_06115 SM00387 Histidine kinase-like ATPases CVS48_06115 SM00388 His Kinase A (phosphoacceptor) domain CVS48_06145 SM00357 Cold shock protein domain CVS48_06150 SM01228 CVS48_06150 CVS48_06170 SM00470 ParB-like nuclease domain CVS48_06175 SM00870 CVS48_06175 CVS48_06195 SM00450 Rhodanese Homology Domain CVS48_06205 SM01230 CVS48_06205 CVS48_06250 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CVS48_06250 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CVS48_06255 SM00649 Ribosomal protein L11/L12 CVS48_06280 SM00663 RNA polymerase I subunit A N-terminus CVS48_06305 SM00257 Lysin motif CVS48_06310 SM00448 cheY-homologous receiver domain CVS48_06310 SM00862 Transcriptional regulatory protein, C terminal CVS48_06315 SM00448 cheY-homologous receiver domain CVS48_06315 SM00862 Transcriptional regulatory protein, C terminal CVS48_06330 SM00838 Elongation factor G C-terminus CVS48_06330 SM00889 Elongation factor G, domain IV CVS48_06340 SM01403 CVS48_06340 CVS48_06350 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_06375 SM00382 ATPases associated with a variety of cellular activities CVS48_06400 SM01382 CVS48_06400 CVS48_06400 SM01383 CVS48_06400 CVS48_06415 SM00322 K homology RNA-binding domain CVS48_06455 SM00382 ATPases associated with a variety of cellular activities CVS48_06460 SM00382 ATPases associated with a variety of cellular activities CVS48_06475 SM00342 helix_turn_helix, arabinose operon control protein CVS48_06490 SM01374 CVS48_06490 CVS48_06565 SM00363 S4 RNA-binding domain CVS48_06565 SM01390 CVS48_06565 CVS48_06570 SM00662 RNA polymerases D CVS48_06600 SM01004 Delta-aminolevulinic acid dehydratase CVS48_06695 SM00382 ATPases associated with a variety of cellular activities CVS48_06695 SM01086 C-terminal, D2-small domain, of ClpB protein CVS48_06700 SM00240 Forkhead associated domain CVS48_06750 SM01219 CVS48_06750 CVS48_06770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS48_06795 SM00912 haemagglutination activity domain CVS48_06800 SM00912 haemagglutination activity domain CVS48_06805 SM00912 haemagglutination activity domain CVS48_06810 SM00912 haemagglutination activity domain CVS48_06820 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS48_06830 SM00342 helix_turn_helix, arabinose operon control protein CVS48_06870 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_06870 SM00895 CVS48_06870 CVS48_06900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS48_06905 SM01130 CVS48_06905 CVS48_06935 SM00834 Putative regulatory protein CVS48_06955 SM00155 Phospholipase D. Active site motifs. CVS48_07030 SM00382 ATPases associated with a variety of cellular activities CVS48_07060 SM00858 CVS48_07060 CVS48_07175 SM00382 ATPases associated with a variety of cellular activities CVS48_07195 SM00936 Penicillin-binding protein 5, C-terminal domain CVS48_07215 SM00671 Sel1-like repeats. CVS48_07225 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_07240 SM00382 ATPases associated with a variety of cellular activities CVS48_07240 SM01086 C-terminal, D2-small domain, of ClpB protein CVS48_07255 SM00833 Cobalamin synthesis protein cobW C-terminal domain CVS48_07265 SM00382 ATPases associated with a variety of cellular activities CVS48_07330 SM00344 helix_turn_helix ASNC type CVS48_07335 SM00382 ATPases associated with a variety of cellular activities CVS48_07355 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_07355 SM00895 CVS48_07355 CVS48_07360 SM00903 Flavin reductase like domain CVS48_07370 SM00530 Helix-turn-helix XRE-family like proteins CVS48_07410 SM00996 S-adenosyl-L-homocysteine hydrolase CVS48_07410 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CVS48_07435 SM00460 Transglutaminase/protease-like homologues CVS48_07470 SM00487 DEAD-like helicases superfamily CVS48_07470 SM00490 helicase superfamily c-terminal domain CVS48_07475 SM00986 Uracil DNA glycosylase superfamily CVS48_07475 SM00987 UreE urease accessory protein, C-terminal domain CVS48_07510 SM00849 Metallo-beta-lactamase superfamily CVS48_07515 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS48_07535 SM00382 ATPases associated with a variety of cellular activities CVS48_07555 SM00382 ATPases associated with a variety of cellular activities CVS48_07565 SM00100 Cyclic nucleotide-monophosphate binding domain CVS48_07570 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_07595 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CVS48_07615 SM00845 GatB domain CVS48_07690 SM00749 bacterial OsmY and nodulation domain CVS48_07735 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_07755 SM00382 ATPases associated with a variety of cellular activities CVS48_07775 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS48_07805 SM00382 ATPases associated with a variety of cellular activities CVS48_07810 SM00382 ATPases associated with a variety of cellular activities CVS48_07865 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_07895 SM01118 CVS48_07895 CVS48_07925 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_07945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_07945 SM00387 Histidine kinase-like ATPases CVS48_07945 SM00388 His Kinase A (phosphoacceptor) domain CVS48_07950 SM00448 cheY-homologous receiver domain CVS48_08010 SM00450 Rhodanese Homology Domain CVS48_08015 SM00855 Phosphoglycerate mutase family CVS48_08025 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS48_08025 SM00245 tail specific protease CVS48_08035 SM00267 diguanylate cyclase CVS48_08040 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_08040 SM00895 CVS48_08040 CVS48_08060 SM00530 Helix-turn-helix XRE-family like proteins CVS48_08065 SM00862 Transcriptional regulatory protein, C terminal CVS48_08070 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CVS48_08090 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_08165 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CVS48_08165 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CVS48_08165 SM00493 CVS48_08165 CVS48_08245 SM00448 cheY-homologous receiver domain CVS48_08245 SM00862 Transcriptional regulatory protein, C terminal CVS48_08250 SM00387 Histidine kinase-like ATPases CVS48_08250 SM00388 His Kinase A (phosphoacceptor) domain CVS48_08255 SM00448 cheY-homologous receiver domain CVS48_08255 SM00862 Transcriptional regulatory protein, C terminal CVS48_08295 SM00487 DEAD-like helicases superfamily CVS48_08465 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS48_08535 SM00382 ATPases associated with a variety of cellular activities CVS48_08535 SM01086 C-terminal, D2-small domain, of ClpB protein CVS48_08575 SM01043 Bacterial transcriptional activator domain CVS48_08595 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CVS48_08600 SM00422 helix_turn_helix, mercury resistance CVS48_08635 SM00822 CVS48_08635 CVS48_08660 SM00671 Sel1-like repeats. CVS48_08700 SM00822 CVS48_08700 CVS48_08705 SM00354 helix_turn _helix lactose operon repressor CVS48_08725 SM00849 Metallo-beta-lactamase superfamily CVS48_08735 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_08735 SM00895 CVS48_08735 CVS48_08740 SM00382 ATPases associated with a variety of cellular activities CVS48_08745 SM00382 ATPases associated with a variety of cellular activities CVS48_08790 SM01007 Class II Aldolase and Adducin N-terminal domain CVS48_08825 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_08825 SM00895 CVS48_08825 CVS48_08850 SM00382 ATPases associated with a variety of cellular activities CVS48_08870 SM00833 Cobalamin synthesis protein cobW C-terminal domain CVS48_08900 SM00822 CVS48_08900 CVS48_08905 SM00861 Transketolase, pyrimidine binding domain CVS48_08910 SM00822 CVS48_08910 CVS48_08915 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_08915 SM00895 CVS48_08915 CVS48_08955 SM00382 ATPases associated with a variety of cellular activities CVS48_08960 SM00382 ATPases associated with a variety of cellular activities CVS48_08995 SM00344 helix_turn_helix ASNC type CVS48_09045 SM00382 ATPases associated with a variety of cellular activities CVS48_09080 SM00937 CVS48_09080 CVS48_09130 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_09165 SM00947 Carbonic anhydrase CVS48_09200 SM00882 Coenzyme A transferase CVS48_09205 SM00882 Coenzyme A transferase CVS48_09210 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_09285 SM00861 Transketolase, pyrimidine binding domain CVS48_09290 SM00822 CVS48_09290 CVS48_09295 SM00382 ATPases associated with a variety of cellular activities CVS48_09300 SM00382 ATPases associated with a variety of cellular activities CVS48_09320 SM00822 CVS48_09320 CVS48_09325 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_09325 SM00895 CVS48_09325 CVS48_09330 SM00858 CVS48_09330 CVS48_09355 SM00382 ATPases associated with a variety of cellular activities CVS48_09360 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_09375 SM00382 ATPases associated with a variety of cellular activities CVS48_09405 SM00830 Chorismate mutase type II CVS48_09470 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_09480 SM01130 CVS48_09480 CVS48_09490 SM00382 ATPases associated with a variety of cellular activities CVS48_09515 SM00530 Helix-turn-helix XRE-family like proteins CVS48_09605 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_09635 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CVS48_09680 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_09740 SM00387 Histidine kinase-like ATPases CVS48_09745 SM00530 Helix-turn-helix XRE-family like proteins CVS48_09755 SM00881 CoA binding domain CVS48_09760 SM00829 Enoylreductase CVS48_09780 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_09785 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_09805 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS48_09820 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_09830 SM00644 CVS48_09830 CVS48_09845 SM00382 ATPases associated with a variety of cellular activities CVS48_09845 SM00962 SRP54-type protein, GTPase domain CVS48_09845 SM00963 SRP54-type protein, helical bundle domain CVS48_09850 SM00257 Lysin motif CVS48_09880 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_09880 SM00895 CVS48_09880 CVS48_09905 SM01130 CVS48_09905 CVS48_09920 SM00382 ATPases associated with a variety of cellular activities CVS48_09925 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_09965 SM00100 Cyclic nucleotide-monophosphate binding domain CVS48_09990 SM00382 ATPases associated with a variety of cellular activities CVS48_09995 SM00829 Enoylreductase CVS48_10045 SM00014 Acid phosphatase homologues CVS48_10080 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_10115 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_10135 SM00966 SpoVT / AbrB like domain CVS48_10150 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_10150 SM00895 CVS48_10150 CVS48_10160 SM00382 ATPases associated with a variety of cellular activities CVS48_10190 SM00849 Metallo-beta-lactamase superfamily CVS48_10195 SM00382 ATPases associated with a variety of cellular activities CVS48_10225 SM00382 ATPases associated with a variety of cellular activities CVS48_10230 SM00382 ATPases associated with a variety of cellular activities CVS48_10245 SM00829 Enoylreductase CVS48_10315 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_10325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_10325 SM00387 Histidine kinase-like ATPases CVS48_10325 SM00388 His Kinase A (phosphoacceptor) domain CVS48_10330 SM00448 cheY-homologous receiver domain CVS48_10330 SM00862 Transcriptional regulatory protein, C terminal CVS48_10400 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_10420 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_10420 SM00895 CVS48_10420 CVS48_10425 SM00382 ATPases associated with a variety of cellular activities CVS48_10430 SM00382 ATPases associated with a variety of cellular activities CVS48_10450 SM00822 CVS48_10450 CVS48_10460 SM00052 Putative diguanylate phosphodiesterase CVS48_10470 SM00862 Transcriptional regulatory protein, C terminal CVS48_10475 SM00530 Helix-turn-helix XRE-family like proteins CVS48_10495 SM00450 Rhodanese Homology Domain CVS48_10545 SM00267 diguanylate cyclase CVS48_10610 SM00382 ATPases associated with a variety of cellular activities CVS48_10645 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_10655 SM00052 Putative diguanylate phosphodiesterase CVS48_10655 SM00267 diguanylate cyclase CVS48_10680 SM00984 UDP binding domain CVS48_10740 SM00448 cheY-homologous receiver domain CVS48_10740 SM00862 Transcriptional regulatory protein, C terminal CVS48_10745 SM00387 Histidine kinase-like ATPases CVS48_10745 SM00388 His Kinase A (phosphoacceptor) domain CVS48_10780 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_10780 SM00895 CVS48_10780 CVS48_10820 SM00849 Metallo-beta-lactamase superfamily CVS48_10825 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CVS48_10825 SM01232 CVS48_10825 CVS48_10830 SM00028 Tetratricopeptide repeats CVS48_10870 SM01400 CVS48_10870 CVS48_10935 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_10980 SM00382 ATPases associated with a variety of cellular activities CVS48_10980 SM00962 SRP54-type protein, GTPase domain CVS48_10980 SM00963 SRP54-type protein, helical bundle domain CVS48_10990 SM00880 CVS48_10990 CVS48_10990 SM01118 CVS48_10990 CVS48_11005 SM00382 ATPases associated with a variety of cellular activities CVS48_11015 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_11055 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CVS48_11070 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_11070 SM00895 CVS48_11070 CVS48_11100 SM00858 CVS48_11100 CVS48_11115 SM00382 ATPases associated with a variety of cellular activities CVS48_11120 SM00382 ATPases associated with a variety of cellular activities CVS48_11165 SM00883 Chaperonin 10 Kd subunit CVS48_11190 SM00881 CoA binding domain CVS48_11200 SM00822 CVS48_11200 CVS48_11295 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS48_11295 SM00267 diguanylate cyclase CVS48_11305 SM00091 PAS domain CVS48_11305 SM00862 Transcriptional regulatory protein, C terminal CVS48_11310 SM00869 Autotransporter beta-domain CVS48_11325 SM00829 Enoylreductase CVS48_11340 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_11395 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_11400 SM00448 cheY-homologous receiver domain CVS48_11400 SM00862 Transcriptional regulatory protein, C terminal CVS48_11405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_11405 SM00387 Histidine kinase-like ATPases CVS48_11405 SM00388 His Kinase A (phosphoacceptor) domain CVS48_11445 SM00342 helix_turn_helix, arabinose operon control protein CVS48_11475 SM00342 helix_turn_helix, arabinose operon control protein CVS48_11480 SM01007 Class II Aldolase and Adducin N-terminal domain CVS48_11490 SM00912 haemagglutination activity domain CVS48_11500 SM00342 helix_turn_helix, arabinose operon control protein CVS48_11500 SM00448 cheY-homologous receiver domain CVS48_11505 SM00387 Histidine kinase-like ATPases CVS48_11505 SM00388 His Kinase A (phosphoacceptor) domain CVS48_11505 SM00448 cheY-homologous receiver domain CVS48_11615 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_11625 SM00450 Rhodanese Homology Domain CVS48_11635 SM00998 Adenylosuccinate lyase C-terminus CVS48_11645 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_11700 SM00965 Secretin and TonB N terminus short domain CVS48_11710 SM00342 helix_turn_helix, arabinose operon control protein CVS48_11765 SM00849 Metallo-beta-lactamase superfamily CVS48_11770 SM00822 CVS48_11770 CVS48_11790 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_11815 SM00998 Adenylosuccinate lyase C-terminus CVS48_11820 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_11820 SM00866 CVS48_11820 CVS48_11830 SM00822 CVS48_11830 CVS48_11840 SM00267 diguanylate cyclase CVS48_11845 SM00448 cheY-homologous receiver domain CVS48_11850 SM00869 Autotransporter beta-domain CVS48_11855 SM00028 Tetratricopeptide repeats CVS48_11885 SM01007 Class II Aldolase and Adducin N-terminal domain CVS48_11890 SM00867 YceI-like domain CVS48_11895 SM00530 Helix-turn-helix XRE-family like proteins CVS48_11940 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_11940 SM00895 CVS48_11940 CVS48_11945 SM00387 Histidine kinase-like ATPases CVS48_11945 SM00388 His Kinase A (phosphoacceptor) domain CVS48_11950 SM00448 cheY-homologous receiver domain CVS48_11950 SM00862 Transcriptional regulatory protein, C terminal CVS48_12020 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_12030 SM00421 helix_turn_helix, Lux Regulon CVS48_12030 SM00448 cheY-homologous receiver domain CVS48_12035 SM00387 Histidine kinase-like ATPases CVS48_12035 SM00388 His Kinase A (phosphoacceptor) domain CVS48_12035 SM00448 cheY-homologous receiver domain CVS48_12040 SM00052 Putative diguanylate phosphodiesterase CVS48_12040 SM00448 cheY-homologous receiver domain CVS48_12045 SM00387 Histidine kinase-like ATPases CVS48_12045 SM00388 His Kinase A (phosphoacceptor) domain CVS48_12045 SM00448 cheY-homologous receiver domain CVS48_12065 SM00248 ankyrin repeats CVS48_12080 SM01400 CVS48_12080 CVS48_12165 SM00342 helix_turn_helix, arabinose operon control protein CVS48_12185 SM00244 prohibitin homologues CVS48_12205 SM00965 Secretin and TonB N terminus short domain CVS48_12225 SM00965 Secretin and TonB N terminus short domain CVS48_12230 SM00387 Histidine kinase-like ATPases CVS48_12230 SM00388 His Kinase A (phosphoacceptor) domain CVS48_12230 SM00448 cheY-homologous receiver domain CVS48_12245 SM00965 Secretin and TonB N terminus short domain CVS48_12255 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_12255 SM00895 CVS48_12255 CVS48_12290 SM00822 CVS48_12290 CVS48_12320 SM00155 Phospholipase D. Active site motifs. CVS48_12325 SM00530 Helix-turn-helix XRE-family like proteins CVS48_12350 SM00822 CVS48_12350 CVS48_12370 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_12380 SM00342 helix_turn_helix, arabinose operon control protein CVS48_12390 SM00919 Malic enzyme, NAD binding domain CVS48_12390 SM01274 CVS48_12390 CVS48_12435 SM00248 ankyrin repeats CVS48_12460 SM00448 cheY-homologous receiver domain CVS48_12465 SM00387 Histidine kinase-like ATPases CVS48_12485 SM00257 Lysin motif CVS48_12490 SM00382 ATPases associated with a variety of cellular activities CVS48_12500 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_12515 SM00344 helix_turn_helix ASNC type CVS48_12560 SM00965 Secretin and TonB N terminus short domain CVS48_12580 SM00382 ATPases associated with a variety of cellular activities CVS48_12595 SM00478 endonuclease III CVS48_12595 SM01009 AlkA N-terminal domain CVS48_12605 SM01329 CVS48_12605 CVS48_12615 SM00014 Acid phosphatase homologues CVS48_12635 SM00382 ATPases associated with a variety of cellular activities CVS48_12650 SM00567 E-Z type HEAT repeats CVS48_12665 SM00796 Allophanate hydrolase subunit 1 CVS48_12665 SM00797 Allophanate hydrolase subunit 2 CVS48_12665 SM00878 Biotin carboxylase C-terminal domain CVS48_12670 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_12670 SM00895 CVS48_12670 CVS48_12715 SM01321 CVS48_12715 CVS48_12755 SM00448 cheY-homologous receiver domain CVS48_12755 SM00862 Transcriptional regulatory protein, C terminal CVS48_12760 SM00387 Histidine kinase-like ATPases CVS48_12820 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CVS48_12820 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVS48_12825 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CVS48_12840 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_12850 SM00852 Probable molybdopterin binding domain CVS48_12855 SM00852 Probable molybdopterin binding domain CVS48_12905 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_12905 SM00876 Biotin and Thiamin Synthesis associated domain CVS48_12910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS48_12910 SM00091 PAS domain CVS48_12910 SM00421 helix_turn_helix, Lux Regulon CVS48_12955 SM01091 Transporter associated domain CVS48_12970 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_12975 SM00014 Acid phosphatase homologues CVS48_12985 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CVS48_13005 SM01323 CVS48_13005 CVS48_13035 SM00448 cheY-homologous receiver domain CVS48_13035 SM01012 CVS48_13035 CVS48_13050 SM00382 ATPases associated with a variety of cellular activities CVS48_13060 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CVS48_13105 SM00919 Malic enzyme, NAD binding domain CVS48_13105 SM01274 CVS48_13105 CVS48_13130 SM00861 Transketolase, pyrimidine binding domain CVS48_13135 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS48_13185 SM00271 DnaJ molecular chaperone homology domain CVS48_13215 SM00852 Probable molybdopterin binding domain CVS48_13235 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_13250 SM00382 ATPases associated with a variety of cellular activities CVS48_13285 SM00072 Guanylate kinase homologues. CVS48_13300 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_13300 SM00866 CVS48_13300 CVS48_13325 SM00382 ATPases associated with a variety of cellular activities CVS48_13330 SM00382 ATPases associated with a variety of cellular activities CVS48_13365 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_13390 SM00382 ATPases associated with a variety of cellular activities CVS48_13420 SM01001 AIR carboxylase CVS48_13435 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_13440 SM00882 Coenzyme A transferase CVS48_13445 SM00882 Coenzyme A transferase CVS48_13455 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_13460 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_13470 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_13480 SM00382 ATPases associated with a variety of cellular activities CVS48_13490 SM00382 ATPases associated with a variety of cellular activities CVS48_13495 SM00382 ATPases associated with a variety of cellular activities CVS48_13525 SM00530 Helix-turn-helix XRE-family like proteins CVS48_13575 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_13575 SM00895 CVS48_13575 CVS48_13580 SM00989 CVS48_13580 CVS48_13600 SM00382 ATPases associated with a variety of cellular activities CVS48_13615 SM00829 Enoylreductase CVS48_13625 SM01130 CVS48_13625 CVS48_13635 SM00822 CVS48_13635 CVS48_13645 SM00829 Enoylreductase CVS48_13680 SM00387 Histidine kinase-like ATPases CVS48_13680 SM00388 His Kinase A (phosphoacceptor) domain CVS48_13680 SM00448 cheY-homologous receiver domain CVS48_13685 SM00421 helix_turn_helix, Lux Regulon CVS48_13685 SM00448 cheY-homologous receiver domain CVS48_13725 SM00382 ATPases associated with a variety of cellular activities CVS48_13735 SM00493 CVS48_13735 CVS48_13750 SM00382 ATPases associated with a variety of cellular activities CVS48_13770 SM00448 cheY-homologous receiver domain CVS48_13775 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS48_13775 SM00387 Histidine kinase-like ATPases CVS48_13775 SM00388 His Kinase A (phosphoacceptor) domain CVS48_13790 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CVS48_13795 SM00851 MGS-like domain CVS48_13795 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CVS48_13805 SM00855 Phosphoglycerate mutase family CVS48_13815 SM00382 ATPases associated with a variety of cellular activities CVS48_13845 SM01103 CVS48_13845 CVS48_13855 SM00382 ATPases associated with a variety of cellular activities CVS48_13900 SM00382 ATPases associated with a variety of cellular activities CVS48_13930 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS48_13955 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_13955 SM00895 CVS48_13955 CVS48_14000 SM00477 DNA/RNA non-specific endonuclease CVS48_14000 SM00892 DNA/RNA non-specific endonuclease CVS48_14065 SM00342 helix_turn_helix, arabinose operon control protein CVS48_14075 SM00860 SMI1 / KNR4 family CVS48_14090 SM00028 Tetratricopeptide repeats CVS48_14095 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CVS48_14120 SM00829 Enoylreductase CVS48_14125 SM00382 ATPases associated with a variety of cellular activities CVS48_14130 SM00382 ATPases associated with a variety of cellular activities CVS48_14165 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_14165 SM00895 CVS48_14165 CVS48_14175 SM00861 Transketolase, pyrimidine binding domain CVS48_14215 SM00342 helix_turn_helix, arabinose operon control protein CVS48_14225 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS48_14225 SM00091 PAS domain CVS48_14225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_14235 SM00479 CVS48_14235 CVS48_14305 SM00382 ATPases associated with a variety of cellular activities CVS48_14305 SM00448 cheY-homologous receiver domain CVS48_14310 SM00387 Histidine kinase-like ATPases CVS48_14310 SM00388 His Kinase A (phosphoacceptor) domain CVS48_14345 SM01209 CVS48_14345 CVS48_14345 SM01210 CVS48_14345 CVS48_14360 SM01329 CVS48_14360 CVS48_14385 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_14400 SM00829 Enoylreductase CVS48_14440 SM00342 helix_turn_helix, arabinose operon control protein CVS48_14460 SM00357 Cold shock protein domain CVS48_14460 SM00382 ATPases associated with a variety of cellular activities CVS48_14460 SM00959 Rho termination factor, N-terminal domain CVS48_14470 SM00387 Histidine kinase-like ATPases CVS48_14470 SM00433 TopoisomeraseII CVS48_14480 SM00434 DNA Topoisomerase IV CVS48_14510 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_14610 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CVS48_14645 SM00530 Helix-turn-helix XRE-family like proteins CVS48_14650 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_14650 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS48_14660 SM00382 ATPases associated with a variety of cellular activities CVS48_14680 SM00562 CVS48_14680 CVS48_14710 SM00564 beta-propeller repeat CVS48_14715 SM00382 ATPases associated with a variety of cellular activities CVS48_14735 SM00244 prohibitin homologues CVS48_14740 SM00244 prohibitin homologues CVS48_14750 SM00788 Adenylosuccinate synthetase CVS48_14765 SM00400 zinc finger CVS48_14765 SM00493 CVS48_14765 CVS48_14765 SM00766 DNA primase DnaG DnaB-binding CVS48_14825 SM00858 CVS48_14825 CVS48_14835 SM00240 Forkhead associated domain CVS48_14865 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS48_14885 SM00448 cheY-homologous receiver domain CVS48_14885 SM00862 Transcriptional regulatory protein, C terminal CVS48_14890 SM00387 Histidine kinase-like ATPases CVS48_14890 SM00388 His Kinase A (phosphoacceptor) domain CVS48_14895 SM00052 Putative diguanylate phosphodiesterase CVS48_14895 SM00267 diguanylate cyclase CVS48_14915 SM00052 Putative diguanylate phosphodiesterase CVS48_14915 SM00267 diguanylate cyclase CVS48_14930 SM00327 von Willebrand factor (vWF) type A domain CVS48_14930 SM00736 Dystroglycan-type cadherin-like domains. CVS48_14935 SM00421 helix_turn_helix, Lux Regulon CVS48_14945 SM00382 ATPases associated with a variety of cellular activities CVS48_14970 SM01329 CVS48_14970 CVS48_14975 SM00859 Semialdehyde dehydrogenase, NAD binding domain CVS48_15005 SM00052 Putative diguanylate phosphodiesterase CVS48_15055 SM00354 helix_turn _helix lactose operon repressor CVS48_15075 SM00382 ATPases associated with a variety of cellular activities CVS48_15100 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_15100 SM00895 CVS48_15100 CVS48_15110 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_15115 SM00421 helix_turn_helix, Lux Regulon CVS48_15115 SM00448 cheY-homologous receiver domain CVS48_15120 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CVS48_15155 SM00938 Nitrogen regulatory protein P-II CVS48_15165 SM00382 ATPases associated with a variety of cellular activities CVS48_15185 SM00873 B3/4 domain CVS48_15185 SM00874 tRNA synthetase B5 domain CVS48_15185 SM00896 Ferredoxin-fold anticodon binding domain CVS48_15190 SM00411 bacterial (prokaryotic) histone like domain CVS48_15195 SM00422 helix_turn_helix, mercury resistance CVS48_15260 SM00344 helix_turn_helix ASNC type CVS48_15330 SM00382 ATPases associated with a variety of cellular activities CVS48_15360 SM00342 helix_turn_helix, arabinose operon control protein CVS48_15370 SM00267 diguanylate cyclase CVS48_15405 SM00825 Beta-ketoacyl synthase CVS48_15410 SM00822 CVS48_15410 CVS48_15420 SM00825 Beta-ketoacyl synthase CVS48_15480 SM00563 Phosphate acyltransferases CVS48_15515 SM00342 helix_turn_helix, arabinose operon control protein CVS48_15585 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_15615 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_15650 SM00822 CVS48_15650 CVS48_15685 SM00986 Uracil DNA glycosylase superfamily CVS48_15685 SM00987 UreE urease accessory protein, C-terminal domain CVS48_15700 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CVS48_15705 SM00028 Tetratricopeptide repeats CVS48_15745 SM00382 ATPases associated with a variety of cellular activities CVS48_15760 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CVS48_15790 SM00966 SpoVT / AbrB like domain CVS48_15800 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_15800 SM00895 CVS48_15800 CVS48_15815 SM00052 Putative diguanylate phosphodiesterase CVS48_15815 SM00091 PAS domain CVS48_15815 SM00267 diguanylate cyclase CVS48_15830 SM00822 CVS48_15830 CVS48_15855 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_15855 SM00866 CVS48_15855 CVS48_15885 SM00342 helix_turn_helix, arabinose operon control protein CVS48_15895 SM00382 ATPases associated with a variety of cellular activities CVS48_15910 SM00382 ATPases associated with a variety of cellular activities CVS48_15920 SM00382 ATPases associated with a variety of cellular activities CVS48_15945 SM00893 Electron transfer flavoprotein domain CVS48_15950 SM00893 Electron transfer flavoprotein domain CVS48_16010 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_16010 SM00895 CVS48_16010 CVS48_16030 SM01007 Class II Aldolase and Adducin N-terminal domain CVS48_16045 SM00422 helix_turn_helix, mercury resistance CVS48_16065 SM00965 Secretin and TonB N terminus short domain CVS48_16075 SM00861 Transketolase, pyrimidine binding domain CVS48_16100 SM00965 Secretin and TonB N terminus short domain CVS48_16130 SM00938 Nitrogen regulatory protein P-II CVS48_16145 SM00382 ATPases associated with a variety of cellular activities CVS48_16260 SM00382 ATPases associated with a variety of cellular activities CVS48_16270 SM01322 CVS48_16270 CVS48_16295 SM00387 Histidine kinase-like ATPases CVS48_16295 SM00388 His Kinase A (phosphoacceptor) domain CVS48_16300 SM00448 cheY-homologous receiver domain CVS48_16300 SM00862 Transcriptional regulatory protein, C terminal CVS48_16315 SM01236 CVS48_16315 CVS48_16320 SM00822 CVS48_16320 CVS48_16390 SM00965 Secretin and TonB N terminus short domain CVS48_16400 SM00829 Enoylreductase CVS48_16455 SM00382 ATPases associated with a variety of cellular activities CVS48_16475 SM00869 Autotransporter beta-domain CVS48_16485 SM00530 Helix-turn-helix XRE-family like proteins CVS48_16500 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_16500 SM00866 CVS48_16500 CVS48_16520 SM00382 ATPases associated with a variety of cellular activities CVS48_16525 SM00382 ATPases associated with a variety of cellular activities CVS48_16595 SM00382 ATPases associated with a variety of cellular activities CVS48_16600 SM00382 ATPases associated with a variety of cellular activities CVS48_16610 SM01012 CVS48_16610 CVS48_16620 SM00363 S4 RNA-binding domain CVS48_16670 SM00421 helix_turn_helix, Lux Regulon CVS48_16670 SM00448 cheY-homologous receiver domain CVS48_16675 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS48_16675 SM00091 PAS domain CVS48_16675 SM00387 Histidine kinase-like ATPases CVS48_16675 SM00388 His Kinase A (phosphoacceptor) domain CVS48_16750 SM00028 Tetratricopeptide repeats CVS48_16785 SM00448 cheY-homologous receiver domain CVS48_16790 SM00073 Histidine Phosphotransfer domain CVS48_16790 SM00260 Two component signalling adaptor domain CVS48_16790 SM00387 Histidine kinase-like ATPases CVS48_16790 SM01231 CVS48_16790 CVS48_16795 SM00260 Two component signalling adaptor domain CVS48_16800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_16800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_16805 SM00138 Methyltransferase, chemotaxis proteins CVS48_16810 SM00448 cheY-homologous receiver domain CVS48_16815 SM00448 cheY-homologous receiver domain CVS48_16825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_16840 SM00382 ATPases associated with a variety of cellular activities CVS48_16840 SM00962 SRP54-type protein, GTPase domain CVS48_16855 SM00858 CVS48_16855 CVS48_16900 SM00047 Lysozyme subfamily 2 CVS48_16915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_16915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_16920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_16920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_16935 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS48_16935 SM00091 PAS domain CVS48_16935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_16935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_16985 SM00382 ATPases associated with a variety of cellular activities CVS48_17045 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_17110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS48_17155 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS48_17165 SM00935 Outer membrane protein (OmpH-like) CVS48_17220 SM00342 helix_turn_helix, arabinose operon control protein CVS48_17235 SM00244 prohibitin homologues CVS48_17240 SM00267 diguanylate cyclase CVS48_17310 SM00248 ankyrin repeats CVS48_17315 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_17320 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_17320 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS48_17330 SM00382 ATPases associated with a variety of cellular activities CVS48_17340 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CVS48_17380 SM00344 helix_turn_helix ASNC type CVS48_17435 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS48_17455 SM00965 Secretin and TonB N terminus short domain CVS48_17465 SM00530 Helix-turn-helix XRE-family like proteins CVS48_17500 SM00869 Autotransporter beta-domain CVS48_17530 SM00869 Autotransporter beta-domain CVS48_17560 SM00448 cheY-homologous receiver domain CVS48_17560 SM00862 Transcriptional regulatory protein, C terminal CVS48_17565 SM00387 Histidine kinase-like ATPases CVS48_17565 SM00388 His Kinase A (phosphoacceptor) domain CVS48_17575 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_17615 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_17645 SM01060 CVS48_17645 CVS48_17750 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_17750 SM00895 CVS48_17750 CVS48_17775 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS48_17795 SM00267 diguanylate cyclase CVS48_17880 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_17885 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_17905 SM00382 ATPases associated with a variety of cellular activities CVS48_17925 SM00450 Rhodanese Homology Domain CVS48_17930 SM00267 diguanylate cyclase CVS48_17945 SM00421 helix_turn_helix, Lux Regulon CVS48_17945 SM00448 cheY-homologous receiver domain CVS48_17950 SM00387 Histidine kinase-like ATPases CVS48_17950 SM00388 His Kinase A (phosphoacceptor) domain CVS48_17955 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS48_17960 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_17970 SM00859 Semialdehyde dehydrogenase, NAD binding domain CVS48_17975 SM00849 Metallo-beta-lactamase superfamily CVS48_18010 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_18010 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS48_18020 SM00382 ATPases associated with a variety of cellular activities CVS48_18055 SM00382 ATPases associated with a variety of cellular activities CVS48_18075 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_18080 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_18080 SM00895 CVS48_18080 CVS48_18085 SM01130 CVS48_18085 CVS48_18095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS48_18095 SM00387 Histidine kinase-like ATPases CVS48_18095 SM00388 His Kinase A (phosphoacceptor) domain CVS48_18095 SM00448 cheY-homologous receiver domain CVS48_18100 SM00138 Methyltransferase, chemotaxis proteins CVS48_18110 SM00387 Histidine kinase-like ATPases CVS48_18110 SM00388 His Kinase A (phosphoacceptor) domain CVS48_18110 SM00448 cheY-homologous receiver domain CVS48_18115 SM00965 Secretin and TonB N terminus short domain CVS48_18135 SM00858 CVS48_18135 CVS48_18155 SM00342 helix_turn_helix, arabinose operon control protein CVS48_18160 SM00100 Cyclic nucleotide-monophosphate binding domain CVS48_18190 SM00460 Transglutaminase/protease-like homologues CVS48_18195 SM00460 Transglutaminase/protease-like homologues CVS48_18205 SM00460 Transglutaminase/protease-like homologues CVS48_18265 SM00382 ATPases associated with a variety of cellular activities CVS48_18270 SM00382 ATPases associated with a variety of cellular activities CVS48_18290 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_18290 SM00895 CVS48_18290 CVS48_18295 SM00100 Cyclic nucleotide-monophosphate binding domain CVS48_18295 SM00419 helix_turn_helix, cAMP Regulatory protein CVS48_18310 SM00382 ATPases associated with a variety of cellular activities CVS48_18345 SM00945 ProQ/FINO family CVS48_18365 SM00642 Alpha-amylase domain CVS48_18375 SM00642 Alpha-amylase domain CVS48_18380 SM00642 Alpha-amylase domain CVS48_18385 SM00642 Alpha-amylase domain CVS48_18390 SM00642 Alpha-amylase domain CVS48_18395 SM00642 Alpha-amylase domain CVS48_18430 SM00155 Phospholipase D. Active site motifs. CVS48_18465 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_18465 SM00895 CVS48_18465 CVS48_18475 SM00796 Allophanate hydrolase subunit 1 CVS48_18475 SM00797 Allophanate hydrolase subunit 2 CVS48_18480 SM00878 Biotin carboxylase C-terminal domain CVS48_18545 SM00831 Cation transporter/ATPase, N-terminus CVS48_18560 SM00849 Metallo-beta-lactamase superfamily CVS48_18560 SM01027 Beta-Casp domain CVS48_18565 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS48_18575 SM00387 Histidine kinase-like ATPases CVS48_18580 SM00421 helix_turn_helix, Lux Regulon CVS48_18580 SM00448 cheY-homologous receiver domain CVS48_18585 SM00100 Cyclic nucleotide-monophosphate binding domain CVS48_18585 SM00419 helix_turn_helix, cAMP Regulatory protein CVS48_18600 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS48_18625 SM00382 ATPases associated with a variety of cellular activities CVS48_18630 SM00382 ATPases associated with a variety of cellular activities CVS48_18710 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_18710 SM00895 CVS48_18710 CVS48_18760 SM00986 Uracil DNA glycosylase superfamily CVS48_18760 SM00987 UreE urease accessory protein, C-terminal domain CVS48_18775 SM00487 DEAD-like helicases superfamily CVS48_18775 SM00490 helicase superfamily c-terminal domain CVS48_18810 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CVS48_18835 SM00530 Helix-turn-helix XRE-family like proteins CVS48_18845 SM00363 S4 RNA-binding domain CVS48_18865 SM00267 diguanylate cyclase CVS48_18890 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_18925 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_18955 SM01091 Transporter associated domain CVS48_18990 SM00052 Putative diguanylate phosphodiesterase CVS48_19070 SM00382 ATPases associated with a variety of cellular activities CVS48_19070 SM00448 cheY-homologous receiver domain CVS48_19075 SM00382 ATPases associated with a variety of cellular activities CVS48_19090 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS48_19090 SM00091 PAS domain CVS48_19090 SM00387 Histidine kinase-like ATPases CVS48_19090 SM00388 His Kinase A (phosphoacceptor) domain CVS48_19090 SM00448 cheY-homologous receiver domain CVS48_19125 SM00052 Putative diguanylate phosphodiesterase CVS48_19125 SM00448 cheY-homologous receiver domain CVS48_19150 SM00448 cheY-homologous receiver domain CVS48_19150 SM00862 Transcriptional regulatory protein, C terminal CVS48_19160 SM00382 ATPases associated with a variety of cellular activities CVS48_19180 SM00344 helix_turn_helix ASNC type CVS48_19200 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_19210 SM00829 Enoylreductase CVS48_19215 SM00953 CVS48_19215 CVS48_19270 SM00382 ATPases associated with a variety of cellular activities CVS48_19275 SM00382 ATPases associated with a variety of cellular activities CVS48_19320 SM00382 ATPases associated with a variety of cellular activities CVS48_19335 SM00822 CVS48_19335 CVS48_19335 SM00823 Phosphopantetheine attachment site CVS48_19335 SM00825 Beta-ketoacyl synthase CVS48_19335 SM00826 CVS48_19335 CVS48_19335 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CVS48_19335 SM00829 Enoylreductase CVS48_19335 SM01294 CVS48_19335 CVS48_19345 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS48_19365 SM00382 ATPases associated with a variety of cellular activities CVS48_19405 SM00487 DEAD-like helicases superfamily CVS48_19405 SM00490 helicase superfamily c-terminal domain CVS48_19450 SM00382 ATPases associated with a variety of cellular activities CVS48_19470 SM00382 ATPases associated with a variety of cellular activities CVS48_19470 SM00448 cheY-homologous receiver domain CVS48_19475 SM00091 PAS domain CVS48_19475 SM00387 Histidine kinase-like ATPases CVS48_19475 SM00388 His Kinase A (phosphoacceptor) domain CVS48_19480 SM01230 CVS48_19480 CVS48_19485 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_19495 SM00052 Putative diguanylate phosphodiesterase CVS48_19495 SM00267 diguanylate cyclase CVS48_19555 SM00822 CVS48_19555 CVS48_19570 SM00072 Guanylate kinase homologues. CVS48_19575 SM01409 CVS48_19575 CVS48_19580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS48_19580 SM00954 Region found in RelA / SpoT proteins CVS48_19585 SM00382 ATPases associated with a variety of cellular activities CVS48_19595 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_19595 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS48_19700 SM00382 ATPases associated with a variety of cellular activities CVS48_19715 SM00382 ATPases associated with a variety of cellular activities CVS48_19770 SM00422 helix_turn_helix, mercury resistance CVS48_19810 SM00257 Lysin motif CVS48_19825 SM01207 CVS48_19825 CVS48_19860 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_19870 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_19875 SM00382 ATPases associated with a variety of cellular activities CVS48_19880 SM00382 ATPases associated with a variety of cellular activities CVS48_19965 SM00344 helix_turn_helix ASNC type CVS48_20025 SM00382 ATPases associated with a variety of cellular activities CVS48_20030 SM00382 ATPases associated with a variety of cellular activities CVS48_20045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS48_20055 SM00829 Enoylreductase CVS48_20070 SM00382 ATPases associated with a variety of cellular activities CVS48_20125 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS48_20145 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_20190 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_20215 SM00481 DNA polymerase alpha chain like domain CVS48_20230 SM00382 ATPases associated with a variety of cellular activities CVS48_20245 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_20265 SM00464 Found in ATP-dependent protease La (LON) CVS48_20280 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_20330 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_20330 SM00895 CVS48_20330 CVS48_20350 SM00382 ATPases associated with a variety of cellular activities CVS48_20355 SM00382 ATPases associated with a variety of cellular activities CVS48_20405 SM00342 helix_turn_helix, arabinose operon control protein CVS48_20455 SM00342 helix_turn_helix, arabinose operon control protein CVS48_20490 SM00822 CVS48_20490 CVS48_20500 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_20555 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_20645 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_20645 SM00895 CVS48_20645 CVS48_20665 SM00267 diguanylate cyclase CVS48_20665 SM00448 cheY-homologous receiver domain CVS48_20670 SM00448 cheY-homologous receiver domain CVS48_20675 SM00073 Histidine Phosphotransfer domain CVS48_20675 SM00260 Two component signalling adaptor domain CVS48_20675 SM00387 Histidine kinase-like ATPases CVS48_20675 SM00448 cheY-homologous receiver domain CVS48_20680 SM00260 Two component signalling adaptor domain CVS48_20685 SM00028 Tetratricopeptide repeats CVS48_20685 SM00138 Methyltransferase, chemotaxis proteins CVS48_20690 SM00260 Two component signalling adaptor domain CVS48_20695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_20695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_20715 SM00491 CVS48_20715 CVS48_20720 SM00990 CVS48_20720 CVS48_20755 SM00966 SpoVT / AbrB like domain CVS48_20835 SM00382 ATPases associated with a variety of cellular activities CVS48_20845 SM00822 CVS48_20845 CVS48_20885 SM00422 helix_turn_helix, mercury resistance CVS48_20935 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS48_20935 SM01240 CVS48_20935 CVS48_20990 SM00947 Carbonic anhydrase CVS48_21025 SM00382 ATPases associated with a variety of cellular activities CVS48_21030 SM00382 ATPases associated with a variety of cellular activities CVS48_21065 SM00382 ATPases associated with a variety of cellular activities CVS48_21075 SM00487 DEAD-like helicases superfamily CVS48_21075 SM00490 helicase superfamily c-terminal domain CVS48_21090 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_21095 SM00903 Flavin reductase like domain CVS48_21180 SM00530 Helix-turn-helix XRE-family like proteins CVS48_21200 SM00671 Sel1-like repeats. CVS48_21285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS48_21285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_21295 SM01211 CVS48_21295 CVS48_21320 SM00481 DNA polymerase alpha chain like domain CVS48_21355 SM00530 Helix-turn-helix XRE-family like proteins CVS48_21385 SM00331 Sigma factor PP2C-like phosphatases CVS48_21385 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CVS48_21395 SM01012 CVS48_21395 CVS48_21405 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_21410 SM00354 helix_turn _helix lactose operon repressor CVS48_21450 SM00912 haemagglutination activity domain CVS48_21465 SM00487 DEAD-like helicases superfamily CVS48_21465 SM00490 helicase superfamily c-terminal domain CVS48_21655 SM00530 Helix-turn-helix XRE-family like proteins CVS48_21685 SM00354 helix_turn _helix lactose operon repressor CVS48_21695 SM00822 CVS48_21695 CVS48_21745 SM00382 ATPases associated with a variety of cellular activities CVS48_21770 SM00448 cheY-homologous receiver domain CVS48_21770 SM00862 Transcriptional regulatory protein, C terminal CVS48_21775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_21775 SM00387 Histidine kinase-like ATPases CVS48_21775 SM00388 His Kinase A (phosphoacceptor) domain CVS48_21790 SM00382 ATPases associated with a variety of cellular activities CVS48_21845 SM00382 ATPases associated with a variety of cellular activities CVS48_21865 SM00382 ATPases associated with a variety of cellular activities CVS48_21915 SM00271 DnaJ molecular chaperone homology domain CVS48_21940 SM00226 Low molecular weight phosphatase family CVS48_21945 SM00487 DEAD-like helicases superfamily CVS48_21945 SM00490 helicase superfamily c-terminal domain CVS48_21960 SM00382 ATPases associated with a variety of cellular activities CVS48_21960 SM00464 Found in ATP-dependent protease La (LON) CVS48_21965 SM00382 ATPases associated with a variety of cellular activities CVS48_21965 SM00994 ClpX C4-type zinc finger CVS48_21965 SM01086 C-terminal, D2-small domain, of ClpB protein CVS48_21990 SM00357 Cold shock protein domain CVS48_22005 SM00357 Cold shock protein domain CVS48_22030 SM01119 CVS48_22030 CVS48_22190 SM00382 ATPases associated with a variety of cellular activities CVS48_22205 SM00965 Secretin and TonB N terminus short domain CVS48_22215 SM00830 Chorismate mutase type II CVS48_22245 SM00904 Riboflavin kinase CVS48_22275 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_22305 SM00382 ATPases associated with a variety of cellular activities CVS48_22320 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_22355 SM00382 ATPases associated with a variety of cellular activities CVS48_22360 SM00382 ATPases associated with a variety of cellular activities CVS48_22400 SM00382 ATPases associated with a variety of cellular activities CVS48_22400 SM01086 C-terminal, D2-small domain, of ClpB protein CVS48_22410 SM01359 CVS48_22410 CVS48_22410 SM01360 CVS48_22410 CVS48_22420 SM00357 Cold shock protein domain CVS48_22485 SM00822 CVS48_22485 CVS48_22535 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_22535 SM00895 CVS48_22535 CVS48_22540 SM01130 CVS48_22540 CVS48_22570 SM00382 ATPases associated with a variety of cellular activities CVS48_22580 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_22620 SM01005 Alanine racemase, C-terminal domain CVS48_22705 SM00382 ATPases associated with a variety of cellular activities CVS48_22705 SM01086 C-terminal, D2-small domain, of ClpB protein CVS48_22715 SM00100 Cyclic nucleotide-monophosphate binding domain CVS48_22715 SM00419 helix_turn_helix, cAMP Regulatory protein CVS48_22725 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS48_22785 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_22790 SM00834 Putative regulatory protein CVS48_22810 SM00344 helix_turn_helix ASNC type CVS48_22815 SM00382 ATPases associated with a variety of cellular activities CVS48_22825 SM00382 ATPases associated with a variety of cellular activities CVS48_22915 SM00382 ATPases associated with a variety of cellular activities CVS48_22935 SM00363 S4 RNA-binding domain CVS48_22975 SM00382 ATPases associated with a variety of cellular activities CVS48_22980 SM00382 ATPases associated with a variety of cellular activities CVS48_23010 SM00342 helix_turn_helix, arabinose operon control protein CVS48_23050 SM00342 helix_turn_helix, arabinose operon control protein CVS48_23080 SM00342 helix_turn_helix, arabinose operon control protein CVS48_23100 SM00382 ATPases associated with a variety of cellular activities CVS48_23105 SM01130 CVS48_23105 CVS48_23110 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS48_23210 SM00829 Enoylreductase CVS48_23245 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CVS48_23245 SM00465 GIY-YIG type nucleases (URI domain) CVS48_23280 SM00862 Transcriptional regulatory protein, C terminal CVS48_23300 SM00382 ATPases associated with a variety of cellular activities CVS48_23350 SM00382 ATPases associated with a variety of cellular activities CVS48_23390 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_23390 SM00895 CVS48_23390 CVS48_23415 SM00881 CoA binding domain CVS48_23425 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_23455 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS48_23550 SM00841 Elongation factor P, C-terminal CVS48_23550 SM01185 CVS48_23550 CVS48_23565 SM00382 ATPases associated with a variety of cellular activities CVS48_23580 SM00028 Tetratricopeptide repeats CVS48_23610 SM00858 CVS48_23610 CVS48_23650 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_23655 SM00382 ATPases associated with a variety of cellular activities CVS48_23675 SM00318 Staphylococcal nuclease homologues CVS48_23695 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_23820 SM00421 helix_turn_helix, Lux Regulon CVS48_23825 SM00421 helix_turn_helix, Lux Regulon CVS48_23895 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_23920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_23920 SM00866 CVS48_23920 CVS48_23940 SM00382 ATPases associated with a variety of cellular activities CVS48_23955 SM00882 Coenzyme A transferase CVS48_23960 SM00882 Coenzyme A transferase CVS48_23985 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_24000 SM00530 Helix-turn-helix XRE-family like proteins CVS48_24025 SM00450 Rhodanese Homology Domain CVS48_24050 SM00478 endonuclease III CVS48_24055 SM00840 CVS48_24055 CVS48_24060 SM00028 Tetratricopeptide repeats CVS48_24080 SM01091 Transporter associated domain CVS48_24100 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_24135 SM01007 Class II Aldolase and Adducin N-terminal domain CVS48_24160 SM00382 ATPases associated with a variety of cellular activities CVS48_24175 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_24175 SM00895 CVS48_24175 CVS48_24215 SM00829 Enoylreductase CVS48_24270 SM00530 Helix-turn-helix XRE-family like proteins CVS48_24435 SM00220 Serine/Threonine protein kinases, catalytic domain CVS48_24460 SM00382 ATPases associated with a variety of cellular activities CVS48_24510 SM00448 cheY-homologous receiver domain CVS48_24520 SM00528 Domain in histone-like proteins of HNS family CVS48_24605 SM00507 HNH nucleases CVS48_24655 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CVS48_24655 SM00534 ATPase domain of DNA mismatch repair MUTS family CVS48_24660 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CVS48_24675 SM01130 CVS48_24675 CVS48_24715 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS48_24895 SM00155 Phospholipase D. Active site motifs. CVS48_24935 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_24935 SM00895 CVS48_24935 CVS48_24950 SM00421 helix_turn_helix, Lux Regulon CVS48_24950 SM00448 cheY-homologous receiver domain CVS48_24965 SM00912 haemagglutination activity domain CVS48_25045 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_25075 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CVS48_25080 SM01092 CO dehydrogenase flavoprotein C-terminal domain CVS48_25105 SM00881 CoA binding domain CVS48_25115 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_25140 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_25145 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_25180 SM00998 Adenylosuccinate lyase C-terminus CVS48_25190 SM00357 Cold shock protein domain CVS48_25235 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_25260 SM00965 Secretin and TonB N terminus short domain CVS48_25300 SM00530 Helix-turn-helix XRE-family like proteins CVS48_25320 SM00062 Bacterial periplasmic substrate-binding proteins CVS48_25325 SM00382 ATPases associated with a variety of cellular activities CVS48_25365 SM00382 ATPases associated with a variety of cellular activities CVS48_25390 SM00091 PAS domain CVS48_25395 SM00421 helix_turn_helix, Lux Regulon CVS48_25395 SM00448 cheY-homologous receiver domain CVS48_25410 SM00382 ATPases associated with a variety of cellular activities CVS48_25415 SM01116 CVS48_25415 CVS48_25465 SM00560 LamG-like jellyroll fold domain CVS48_25475 SM00912 haemagglutination activity domain CVS48_25490 SM00965 Secretin and TonB N terminus short domain CVS48_25505 SM00530 Helix-turn-helix XRE-family like proteins CVS48_25510 SM01007 Class II Aldolase and Adducin N-terminal domain CVS48_25550 SM00878 Biotin carboxylase C-terminal domain CVS48_25580 SM00829 Enoylreductase CVS48_25625 SM00965 Secretin and TonB N terminus short domain CVS48_25630 SM00421 helix_turn_helix, Lux Regulon CVS48_25630 SM00448 cheY-homologous receiver domain CVS48_25635 SM00387 Histidine kinase-like ATPases CVS48_25650 SM00829 Enoylreductase CVS48_25695 SM00822 CVS48_25695 CVS48_25705 SM00382 ATPases associated with a variety of cellular activities CVS48_25705 SM00448 cheY-homologous receiver domain CVS48_25725 SM00091 PAS domain CVS48_25725 SM00138 Methyltransferase, chemotaxis proteins CVS48_25725 SM00387 Histidine kinase-like ATPases CVS48_25725 SM00388 His Kinase A (phosphoacceptor) domain CVS48_25725 SM00448 cheY-homologous receiver domain CVS48_25805 SM00448 cheY-homologous receiver domain CVS48_25885 SM00822 CVS48_25885 CVS48_25895 SM00342 helix_turn_helix, arabinose operon control protein CVS48_25915 SM00382 ATPases associated with a variety of cellular activities CVS48_25960 SM00382 ATPases associated with a variety of cellular activities CVS48_25975 SM00936 Penicillin-binding protein 5, C-terminal domain CVS48_25980 SM00411 bacterial (prokaryotic) histone like domain CVS48_25985 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_26065 SM01007 Class II Aldolase and Adducin N-terminal domain CVS48_26095 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_26105 SM00267 diguanylate cyclase CVS48_26120 SM00382 ATPases associated with a variety of cellular activities CVS48_26170 SM00481 DNA polymerase alpha chain like domain CVS48_26180 SM00382 ATPases associated with a variety of cellular activities CVS48_26180 SM00487 DEAD-like helicases superfamily CVS48_26180 SM00490 helicase superfamily c-terminal domain CVS48_26180 SM00847 Helicase associated domain (HA2) Add an annotation CVS48_26250 SM00382 ATPases associated with a variety of cellular activities CVS48_26290 SM00382 ATPases associated with a variety of cellular activities CVS48_26295 SM00382 ATPases associated with a variety of cellular activities CVS48_26330 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_26330 SM00895 CVS48_26330 CVS48_26390 SM00387 Histidine kinase-like ATPases CVS48_26390 SM00388 His Kinase A (phosphoacceptor) domain CVS48_26395 SM00448 cheY-homologous receiver domain CVS48_26395 SM00862 Transcriptional regulatory protein, C terminal CVS48_26420 SM00411 bacterial (prokaryotic) histone like domain CVS48_26425 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CVS48_26435 SM00967 RNA 2'-O ribose methyltransferase substrate binding CVS48_26440 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_26440 SM00357 Cold shock protein domain CVS48_26440 SM00955 CVS48_26440 CVS48_26455 SM01144 CVS48_26455 CVS48_26495 SM00155 Phospholipase D. Active site motifs. CVS48_26550 SM00267 diguanylate cyclase CVS48_26625 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CVS48_26625 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CVS48_26670 SM00528 Domain in histone-like proteins of HNS family CVS48_26720 SM00670 Large family of predicted nucleotide-binding domains CVS48_26735 SM00886 Stress responsive A/B Barrel Domain CVS48_26745 SM00382 ATPases associated with a variety of cellular activities CVS48_26750 SM00382 ATPases associated with a variety of cellular activities CVS48_26755 SM00822 CVS48_26755 CVS48_26775 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_26815 SM00881 CoA binding domain CVS48_26845 SM00382 ATPases associated with a variety of cellular activities CVS48_26850 SM00448 cheY-homologous receiver domain CVS48_26850 SM00862 Transcriptional regulatory protein, C terminal CVS48_26855 SM00387 Histidine kinase-like ATPases CVS48_26855 SM00388 His Kinase A (phosphoacceptor) domain CVS48_26875 SM00267 diguanylate cyclase CVS48_26930 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_26955 SM00344 helix_turn_helix ASNC type CVS48_26975 SM00382 ATPases associated with a variety of cellular activities CVS48_27015 SM00861 Transketolase, pyrimidine binding domain CVS48_27030 SM00346 helix_turn_helix isocitrate lyase regulation CVS48_27070 SM00382 ATPases associated with a variety of cellular activities CVS48_27085 SM00450 Rhodanese Homology Domain CVS48_27120 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CVS48_27120 SM00474 3'-5' exonuclease CVS48_27120 SM00475 5'-3' exonuclease CVS48_27120 SM00482 DNA polymerase A domain CVS48_27165 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_27175 SM00363 S4 RNA-binding domain CVS48_27195 SM00833 Cobalamin synthesis protein cobW C-terminal domain CVS48_27210 SM00448 cheY-homologous receiver domain CVS48_27210 SM00862 Transcriptional regulatory protein, C terminal CVS48_27215 SM00387 Histidine kinase-like ATPases CVS48_27215 SM00388 His Kinase A (phosphoacceptor) domain CVS48_27220 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS48_27325 SM00479 CVS48_27325 CVS48_27365 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS48_27385 SM00382 ATPases associated with a variety of cellular activities CVS48_27430 SM00893 Electron transfer flavoprotein domain CVS48_27435 SM00893 Electron transfer flavoprotein domain CVS48_27455 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CVS48_27490 SM00411 bacterial (prokaryotic) histone like domain CVS48_27495 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_27520 SM00830 Chorismate mutase type II CVS48_27530 SM00434 DNA Topoisomerase IV CVS48_27575 SM00028 Tetratricopeptide repeats CVS48_27615 SM00382 ATPases associated with a variety of cellular activities CVS48_27625 SM01209 CVS48_27625 CVS48_27640 SM00749 bacterial OsmY and nodulation domain CVS48_27675 SM00822 CVS48_27675 CVS48_27700 SM00491 CVS48_27700 CVS48_27705 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_27705 SM00732 Likely ribonuclease with RNase H fold. CVS48_27740 SM01130 CVS48_27740 CVS48_27765 SM00382 ATPases associated with a variety of cellular activities CVS48_27780 SM00965 Secretin and TonB N terminus short domain CVS48_27810 SM00861 Transketolase, pyrimidine binding domain CVS48_27815 SM00344 helix_turn_helix ASNC type CVS48_27865 SM00919 Malic enzyme, NAD binding domain CVS48_27865 SM01274 CVS48_27865 CVS48_27915 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_27915 SM00866 CVS48_27915 CVS48_27945 SM00981 CVS48_27945 CVS48_27990 SM01192 CVS48_27990 CVS48_27990 SM01193 CVS48_27990 CVS48_28050 SM00382 ATPases associated with a variety of cellular activities CVS48_28070 SM00882 Coenzyme A transferase CVS48_28075 SM00882 Coenzyme A transferase CVS48_28105 SM00382 ATPases associated with a variety of cellular activities CVS48_28130 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_28130 SM00895 CVS48_28130 CVS48_28265 SM00358 Double-stranded RNA binding motif CVS48_28265 SM00535 Ribonuclease III family CVS48_28275 SM00838 Elongation factor G C-terminus CVS48_28280 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS48_28305 SM00825 Beta-ketoacyl synthase CVS48_28315 SM00822 CVS48_28315 CVS48_28320 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CVS48_28355 SM00644 CVS48_28355 CVS48_28375 SM00363 S4 RNA-binding domain CVS48_28380 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_28415 SM00954 Region found in RelA / SpoT proteins CVS48_28460 SM00478 endonuclease III CVS48_28460 SM00525 CVS48_28460 CVS48_28465 SM00382 ATPases associated with a variety of cellular activities CVS48_28470 SM00382 ATPases associated with a variety of cellular activities CVS48_28500 SM00382 ATPases associated with a variety of cellular activities CVS48_28505 SM00382 ATPases associated with a variety of cellular activities CVS48_28530 SM00382 ATPases associated with a variety of cellular activities CVS48_28555 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CVS48_28555 SM00292 breast cancer carboxy-terminal domain CVS48_28555 SM00532 Ligase N family CVS48_28560 SM00771 ZipA, C-terminal domain (FtsZ-binding) CVS48_28565 SM00968 SMC proteins Flexible Hinge Domain CVS48_28575 SM00986 Uracil DNA glycosylase superfamily CVS48_28575 SM00987 UreE urease accessory protein, C-terminal domain CVS48_28585 SM00448 cheY-homologous receiver domain CVS48_28585 SM00862 Transcriptional regulatory protein, C terminal CVS48_28590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS48_28590 SM00387 Histidine kinase-like ATPases CVS48_28590 SM00388 His Kinase A (phosphoacceptor) domain CVS48_28620 SM00487 DEAD-like helicases superfamily CVS48_28620 SM00490 helicase superfamily c-terminal domain CVS48_28620 SM00982 CVS48_28620 CVS48_28620 SM01058 CarD-like/TRCF domain CVS48_28675 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVS48_28680 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CVS48_28730 SM00014 Acid phosphatase homologues CVS48_28740 SM00046 Diacylglycerol kinase catalytic domain (presumed) CVS48_28820 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS48_28820 SM00895 CVS48_28820 CVS48_28825 SM00382 ATPases associated with a variety of cellular activities CVS48_28855 SM00357 Cold shock protein domain CVS48_28890 SM00448 cheY-homologous receiver domain CVS48_28890 SM00862 Transcriptional regulatory protein, C terminal CVS48_28895 SM00387 Histidine kinase-like ATPases CVS48_28895 SM00388 His Kinase A (phosphoacceptor) domain CVS48_28905 SM00421 helix_turn_helix, Lux Regulon CVS48_28960 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS48_28960 SM00267 diguanylate cyclase CVS48_28985 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS48_29010 SM00965 Secretin and TonB N terminus short domain CVS48_29035 SM00829 Enoylreductase CVS48_29070 SM00028 Tetratricopeptide repeats CVS48_29100 SM00316 Ribosomal protein S1-like RNA-binding domain CVS48_29100 SM00322 K homology RNA-binding domain CVS48_29105 SM01387 CVS48_29105