locus-tag class description IUJ48_00015 PF00005 ABC transporter IUJ48_00020 PF07690 Major Facilitator Superfamily IUJ48_00025 PF13378 Enolase C-terminal domain-like IUJ48_00025 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IUJ48_00030 PF01081 KDPG and KHG aldolase IUJ48_00040 PF09339 IclR helix-turn-helix domain IUJ48_00040 PF01614 Bacterial transcriptional regulator IUJ48_00060 PF13657 HipA N-terminal domain IUJ48_00060 PF07804 HipA-like C-terminal domain IUJ48_00075 PF00005 ABC transporter IUJ48_00075 PF00664 ABC transporter transmembrane region IUJ48_00080 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_00085 PF02321 Outer membrane efflux protein IUJ48_00090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_00090 PF03466 LysR substrate binding domain IUJ48_00095 PF00171 Aldehyde dehydrogenase family IUJ48_00100 PF01370 NAD dependent epimerase/dehydratase family IUJ48_00130 PF13417 Glutathione S-transferase, N-terminal domain IUJ48_00130 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_00135 PF01510 N-acetylmuramoyl-L-alanine amidase IUJ48_00145 PF01578 Cytochrome C assembly protein IUJ48_00150 PF02978 Signal peptide binding domain IUJ48_00150 PF02881 SRP54-type protein, helical bundle domain IUJ48_00150 PF00448 SRP54-type protein, GTPase domain IUJ48_00155 PF01476 LysM domain IUJ48_00155 PF04972 BON domain IUJ48_00165 PF05690 Thiazole biosynthesis protein ThiG IUJ48_00165 PF02597 ThiS family IUJ48_00170 PF00561 alpha/beta hydrolase fold IUJ48_00175 PF02390 Putative methyltransferase IUJ48_00180 PF03466 LysR substrate binding domain IUJ48_00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_00185 PF02515 CoA-transferase family III IUJ48_00190 PF00682 HMGL-like IUJ48_00195 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_00220 PF01425 Amidase IUJ48_00230 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_00235 PF13378 Enolase C-terminal domain-like IUJ48_00235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IUJ48_00240 PF00285 Citrate synthase, C-terminal domain IUJ48_00245 PF01425 Amidase IUJ48_00250 PF03737 Aldolase/RraA IUJ48_00255 PF04055 Radical SAM superfamily IUJ48_00270 PF05853 beta-keto acid cleavage enzyme IUJ48_00285 PF00083 Sugar (and other) transporter IUJ48_00285 PF07690 Major Facilitator Superfamily IUJ48_00290 PF13417 Glutathione S-transferase, N-terminal domain IUJ48_00315 PF01494 FAD binding domain IUJ48_00325 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_00325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_00325 PF00672 HAMP domain IUJ48_00330 PF00206 Lyase IUJ48_00330 PF14698 Argininosuccinate lyase C-terminal IUJ48_00335 PF00593 TonB dependent receptor IUJ48_00335 PF07715 TonB-dependent Receptor Plug Domain IUJ48_00335 PF07660 Secretin and TonB N terminus short domain IUJ48_00340 PF16220 Domain of unknown function (DUF4880) IUJ48_00340 PF04773 FecR protein IUJ48_00345 PF08281 Sigma-70, region 4 IUJ48_00345 PF04542 Sigma-70 region 2 IUJ48_00350 PF04303 PrpF protein IUJ48_00355 PF00330 Aconitase family (aconitate hydratase) IUJ48_00355 PF00694 Aconitase C-terminal domain IUJ48_00365 PF00444 Ribosomal protein L36 IUJ48_00385 PF07687 Peptidase dimerisation domain IUJ48_00385 PF01546 Peptidase family M20/M25/M40 IUJ48_00390 PF01979 Amidohydrolase family IUJ48_00395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_00395 PF03466 LysR substrate binding domain IUJ48_00405 PF17392 Urocanase C-terminal domain IUJ48_00405 PF17391 Urocanase N-terminal domain IUJ48_00405 PF01175 Urocanase Rossmann-like domain IUJ48_00410 PF07690 Major Facilitator Superfamily IUJ48_00415 PF12706 Beta-lactamase superfamily domain IUJ48_00420 PF00221 Aromatic amino acid lyase IUJ48_00425 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_00425 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_00430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_00430 PF00034 Cytochrome c IUJ48_00435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_00440 PF03466 LysR substrate binding domain IUJ48_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_00455 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_00470 PF00392 Bacterial regulatory proteins, gntR family IUJ48_00470 PF00155 Aminotransferase class I and II IUJ48_00480 PF02322 Cytochrome bd terminal oxidase subunit II IUJ48_00485 PF01654 Cytochrome bd terminal oxidase subunit I IUJ48_00490 PF00892 EamA-like transporter family IUJ48_00495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_00495 PF03466 LysR substrate binding domain IUJ48_00500 PF00106 short chain dehydrogenase IUJ48_00515 PF00005 ABC transporter IUJ48_00520 PF13533 Biotin-lipoyl like IUJ48_00525 PF02321 Outer membrane efflux protein IUJ48_00530 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IUJ48_00530 PF00561 alpha/beta hydrolase fold IUJ48_00535 PF00440 Bacterial regulatory proteins, tetR family IUJ48_00540 PF12792 CSS motif domain associated with EAL IUJ48_00540 PF00563 EAL domain IUJ48_00555 PF13698 Domain of unknown function (DUF4156) IUJ48_00560 PF02254 TrkA-N domain IUJ48_00560 PF07885 Ion channel IUJ48_00565 PF00072 Response regulator receiver domain IUJ48_00565 PF00486 Transcriptional regulatory protein, C terminal IUJ48_00575 PF01757 Acyltransferase family IUJ48_00590 PF00581 Rhodanese-like domain IUJ48_00590 PF17773 UPF0176 acylphosphatase like domain IUJ48_00595 PF09334 tRNA synthetases class I (M) IUJ48_00595 PF01588 Putative tRNA binding domain IUJ48_00605 PF10609 NUBPL iron-transfer P-loop NTPase IUJ48_00620 PF00692 dUTPase IUJ48_00630 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_00630 PF08448 PAS fold IUJ48_00645 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IUJ48_00645 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IUJ48_00645 PF01276 Orn/Lys/Arg decarboxylase, major domain IUJ48_00655 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IUJ48_00655 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IUJ48_00660 PF02535 ZIP Zinc transporter IUJ48_00665 PF08669 Glycine cleavage T-protein C-terminal barrel domain IUJ48_00665 PF01571 Aminomethyltransferase folate-binding domain IUJ48_00670 PF01597 Glycine cleavage H-protein IUJ48_00675 PF02347 Glycine cleavage system P-protein IUJ48_00715 PF01425 Amidase IUJ48_00720 PF00005 ABC transporter IUJ48_00720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_00725 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_00730 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_00735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_00745 PF00171 Aldehyde dehydrogenase family IUJ48_00750 PF00202 Aminotransferase class-III IUJ48_00755 PF00155 Aminotransferase class I and II IUJ48_00760 PF00186 Dihydrofolate reductase IUJ48_00765 PF03707 Bacterial signalling protein N terminal repeat IUJ48_00765 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_00765 PF00563 EAL domain IUJ48_00770 PF00303 Thymidylate synthase IUJ48_00780 PF03232 Ubiquinone biosynthesis protein COQ7 IUJ48_00785 PF00953 Glycosyl transferase family 4 IUJ48_00790 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IUJ48_00790 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IUJ48_00790 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IUJ48_00795 PF01370 NAD dependent epimerase/dehydratase family IUJ48_00800 PF03023 Lipid II flippase MurJ IUJ48_00805 PF00534 Glycosyl transferases group 1 IUJ48_00810 PF00733 Asparagine synthase IUJ48_00810 PF13537 Glutamine amidotransferase domain IUJ48_00815 PF13439 Glycosyltransferase Family 4 IUJ48_00815 PF00534 Glycosyl transferases group 1 IUJ48_00820 PF13439 Glycosyltransferase Family 4 IUJ48_00820 PF00534 Glycosyl transferases group 1 IUJ48_00825 PF00534 Glycosyl transferases group 1 IUJ48_00825 PF13477 Glycosyl transferase 4-like IUJ48_00835 PF00342 Phosphoglucose isomerase IUJ48_00840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ48_00840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ48_00840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ48_00840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ48_00850 PF02913 FAD linked oxidases, C-terminal domain IUJ48_00850 PF01565 FAD binding domain IUJ48_00855 PF00072 Response regulator receiver domain IUJ48_00855 PF00486 Transcriptional regulatory protein, C terminal IUJ48_00860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_00860 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_00860 PF00672 HAMP domain IUJ48_00870 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_00870 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IUJ48_00880 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_00885 PF08450 SMP-30/Gluconolactonase/LRE-like region IUJ48_00890 PF01370 NAD dependent epimerase/dehydratase family IUJ48_00895 PF00392 Bacterial regulatory proteins, gntR family IUJ48_00895 PF07729 FCD domain IUJ48_00900 PF00884 Sulfatase IUJ48_00905 PF01553 Acyltransferase IUJ48_00915 PF04209 homogentisate 1,2-dioxygenase IUJ48_00920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_00920 PF03466 LysR substrate binding domain IUJ48_00930 PF01494 FAD binding domain IUJ48_00940 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IUJ48_00940 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IUJ48_00940 PF06827 Zinc finger found in FPG and IleRS IUJ48_00950 PF03550 Outer membrane lipoprotein LolB IUJ48_00955 PF00672 HAMP domain IUJ48_00955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_00955 PF02203 Tar ligand binding domain homologue IUJ48_00960 PF08544 GHMP kinases C terminal IUJ48_00960 PF00288 GHMP kinases N terminal domain IUJ48_00970 PF14572 Phosphoribosyl synthetase-associated domain IUJ48_00970 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IUJ48_00975 PF01386 Ribosomal L25p family IUJ48_00975 PF14693 Ribosomal protein TL5, C-terminal domain IUJ48_00980 PF01195 Peptidyl-tRNA hydrolase IUJ48_00990 PF06071 Protein of unknown function (DUF933) IUJ48_00990 PF01926 50S ribosome-binding GTPase IUJ48_01005 PF08463 EcoEI R protein C-terminal IUJ48_01005 PF04851 Type III restriction enzyme, res subunit IUJ48_01005 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IUJ48_01005 PF00271 Helicase conserved C-terminal domain IUJ48_01010 PF02384 N-6 DNA Methylase IUJ48_01010 PF12161 HsdM N-terminal domain IUJ48_01040 PF17761 DUF1016 N-terminal domain IUJ48_01040 PF06250 YhcG PDDEXK nuclease domain IUJ48_01045 PF07715 TonB-dependent Receptor Plug Domain IUJ48_01045 PF00593 TonB dependent receptor IUJ48_01050 PF12848 ABC transporter IUJ48_01050 PF00005 ABC transporter IUJ48_01065 PF07690 Major Facilitator Superfamily IUJ48_01080 PF03594 Benzoate membrane transport protein IUJ48_01085 PF00037 4Fe-4S binding domain IUJ48_01090 PF01467 Cytidylyltransferase-like IUJ48_01100 PF02881 SRP54-type protein, helical bundle domain IUJ48_01100 PF00448 SRP54-type protein, GTPase domain IUJ48_01110 PF03797 Autotransporter beta-domain IUJ48_01110 PF12951 Passenger-associated-transport-repeat IUJ48_01110 PF00082 Subtilase family IUJ48_01115 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_01120 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_01125 PF00005 ABC transporter IUJ48_01145 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IUJ48_01145 PF00925 GTP cyclohydrolase II IUJ48_01150 PF00885 6,7-dimethyl-8-ribityllumazine synthase IUJ48_01155 PF01029 NusB family IUJ48_01160 PF00586 AIR synthase related protein, N-terminal domain IUJ48_01160 PF02769 AIR synthase related protein, C-terminal domain IUJ48_01170 PF02464 Competence-damaged protein IUJ48_01175 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IUJ48_01180 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_01185 PF01219 Prokaryotic diacylglycerol kinase IUJ48_01190 PF08125 Mannitol dehydrogenase C-terminal domain IUJ48_01190 PF01232 Mannitol dehydrogenase Rossmann domain IUJ48_01195 PF00005 ABC transporter IUJ48_01200 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_01200 PF00005 ABC transporter IUJ48_01225 PF06052 3-hydroxyanthranilic acid dioxygenase IUJ48_01230 PF03466 LysR substrate binding domain IUJ48_01230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01235 PF01042 Endoribonuclease L-PSP IUJ48_01240 PF00171 Aldehyde dehydrogenase family IUJ48_01245 PF01047 MarR family IUJ48_01255 PF00118 TCP-1/cpn60 chaperonin family IUJ48_01260 PF00166 Chaperonin 10 Kd subunit IUJ48_01280 PF07715 TonB-dependent Receptor Plug Domain IUJ48_01280 PF07660 Secretin and TonB N terminus short domain IUJ48_01280 PF00593 TonB dependent receptor IUJ48_01290 PF08281 Sigma-70, region 4 IUJ48_01290 PF04542 Sigma-70 region 2 IUJ48_01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01310 PF03466 LysR substrate binding domain IUJ48_01315 PF01323 DSBA-like thioredoxin domain IUJ48_01335 PF00501 AMP-binding enzyme IUJ48_01335 PF13193 AMP-binding enzyme C-terminal domain IUJ48_01340 PF13609 Gram-negative porin IUJ48_01345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_01345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_01345 PF01842 ACT domain IUJ48_01350 PF13378 Enolase C-terminal domain-like IUJ48_01355 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_01360 PF00701 Dihydrodipicolinate synthetase family IUJ48_01365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01365 PF03466 LysR substrate binding domain IUJ48_01390 PF03466 LysR substrate binding domain IUJ48_01390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01395 PF03466 LysR substrate binding domain IUJ48_01395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01400 PF00155 Aminotransferase class I and II IUJ48_01410 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_01415 PF07687 Peptidase dimerisation domain IUJ48_01415 PF01546 Peptidase family M20/M25/M40 IUJ48_01420 PF00892 EamA-like transporter family IUJ48_01425 PF02515 CoA-transferase family III IUJ48_01430 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_01435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_01435 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_01435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_01445 PF13098 Thioredoxin-like domain IUJ48_01455 PF00072 Response regulator receiver domain IUJ48_01455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_01455 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_01455 PF08448 PAS fold IUJ48_01455 PF13426 PAS domain IUJ48_01470 PF00593 TonB dependent receptor IUJ48_01470 PF07660 Secretin and TonB N terminus short domain IUJ48_01470 PF07715 TonB-dependent Receptor Plug Domain IUJ48_01475 PF01068 ATP dependent DNA ligase domain IUJ48_01475 PF04675 DNA ligase N terminus IUJ48_01475 PF04679 ATP dependent DNA ligase C terminal region IUJ48_01480 PF01068 ATP dependent DNA ligase domain IUJ48_01480 PF04675 DNA ligase N terminus IUJ48_01480 PF04679 ATP dependent DNA ligase C terminal region IUJ48_01495 PF00664 ABC transporter transmembrane region IUJ48_01495 PF00005 ABC transporter IUJ48_01500 PF00664 ABC transporter transmembrane region IUJ48_01500 PF00005 ABC transporter IUJ48_01500 PF08021 Siderophore-interacting FAD-binding domain IUJ48_01500 PF04954 Siderophore-interacting protein IUJ48_01510 PF02583 Metal-sensitive transcriptional repressor IUJ48_01515 PF01545 Cation efflux family IUJ48_01535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_01535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_01535 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ48_01560 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ48_01570 PF03466 LysR substrate binding domain IUJ48_01570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_01575 PF01842 ACT domain IUJ48_01575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_01580 PF07690 Major Facilitator Superfamily IUJ48_01585 PF00581 Rhodanese-like domain IUJ48_01590 PF13673 Acetyltransferase (GNAT) domain IUJ48_01595 PF12697 Alpha/beta hydrolase family IUJ48_01600 PF01568 Molydopterin dinucleotide binding domain IUJ48_01600 PF00384 Molybdopterin oxidoreductase IUJ48_01605 PF00701 Dihydrodipicolinate synthetase family IUJ48_01610 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_01615 PF01965 DJ-1/PfpI family IUJ48_01625 PF07690 Major Facilitator Superfamily IUJ48_01635 PF07690 Major Facilitator Superfamily IUJ48_01640 PF00574 Clp protease IUJ48_01650 PF01022 Bacterial regulatory protein, arsR family IUJ48_01655 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_01655 PF13185 GAF domain IUJ48_01660 PF00672 HAMP domain IUJ48_01660 PF02203 Tar ligand binding domain homologue IUJ48_01660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_01675 PF13378 Enolase C-terminal domain-like IUJ48_01680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01680 PF03466 LysR substrate binding domain IUJ48_01685 PF00583 Acetyltransferase (GNAT) family IUJ48_01695 PF01253 Translation initiation factor SUI1 IUJ48_01700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01700 PF03466 LysR substrate binding domain IUJ48_01705 PF00248 Aldo/keto reductase family IUJ48_01720 PF00248 Aldo/keto reductase family IUJ48_01730 PF01568 Molydopterin dinucleotide binding domain IUJ48_01730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ48_01730 PF00384 Molybdopterin oxidoreductase IUJ48_01735 PF13806 Rieske-like [2Fe-2S] domain IUJ48_01735 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_01735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ48_01735 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ48_01735 PF18267 Rubredoxin NAD+ reductase C-terminal domain IUJ48_01735 PF04324 BFD-like [2Fe-2S] binding domain IUJ48_01740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ48_01740 PF04324 BFD-like [2Fe-2S] binding domain IUJ48_01740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ48_01740 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_01740 PF13806 Rieske-like [2Fe-2S] domain IUJ48_01740 PF18267 Rubredoxin NAD+ reductase C-terminal domain IUJ48_01745 PF08376 Nitrate and nitrite sensing IUJ48_01745 PF03861 ANTAR domain IUJ48_01765 PF05506 Domain of unknown function (DUF756) IUJ48_01765 PF04185 Phosphoesterase family IUJ48_01775 PF00196 Bacterial regulatory proteins, luxR family IUJ48_01775 PF00072 Response regulator receiver domain IUJ48_01800 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_01810 PF01022 Bacterial regulatory protein, arsR family IUJ48_01815 PF07690 Major Facilitator Superfamily IUJ48_01825 PF13609 Gram-negative porin IUJ48_01830 PF13609 Gram-negative porin IUJ48_01835 PF13609 Gram-negative porin IUJ48_01845 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IUJ48_01850 PF00510 Cytochrome c oxidase subunit III IUJ48_01855 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ48_01860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IUJ48_01860 PF06481 COX Aromatic Rich Motif IUJ48_01865 PF00083 Sugar (and other) transporter IUJ48_01865 PF07690 Major Facilitator Superfamily IUJ48_01870 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_01875 PF00202 Aminotransferase class-III IUJ48_01885 PF00850 Histone deacetylase domain IUJ48_01900 PF16220 Domain of unknown function (DUF4880) IUJ48_01900 PF04773 FecR protein IUJ48_01905 PF00593 TonB dependent receptor IUJ48_01905 PF07715 TonB-dependent Receptor Plug Domain IUJ48_01930 PF03466 LysR substrate binding domain IUJ48_01930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_01935 PF03741 Integral membrane protein TerC family IUJ48_01950 PF12833 Helix-turn-helix domain IUJ48_01950 PF02311 AraC-like ligand binding domain IUJ48_01955 PF07690 Major Facilitator Superfamily IUJ48_01965 PF02868 Thermolysin metallopeptidase, alpha-helical domain IUJ48_01965 PF16485 Protealysin propeptide IUJ48_01965 PF01447 Thermolysin metallopeptidase, catalytic domain IUJ48_01980 PF01145 SPFH domain / Band 7 family IUJ48_01985 PF13426 PAS domain IUJ48_01985 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_01985 PF00563 EAL domain IUJ48_02005 PF07715 TonB-dependent Receptor Plug Domain IUJ48_02005 PF00593 TonB dependent receptor IUJ48_02010 PF00106 short chain dehydrogenase IUJ48_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_02020 PF04542 Sigma-70 region 2 IUJ48_02020 PF08281 Sigma-70, region 4 IUJ48_02025 PF16220 Domain of unknown function (DUF4880) IUJ48_02025 PF04773 FecR protein IUJ48_02030 PF00593 TonB dependent receptor IUJ48_02030 PF07715 TonB-dependent Receptor Plug Domain IUJ48_02040 PF00694 Aconitase C-terminal domain IUJ48_02040 PF00330 Aconitase family (aconitate hydratase) IUJ48_02045 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA IUJ48_02055 PF13419 Haloacid dehalogenase-like hydrolase IUJ48_02065 PF02308 MgtC family IUJ48_02070 PF04209 homogentisate 1,2-dioxygenase IUJ48_02100 PF13532 2OG-Fe(II) oxygenase superfamily IUJ48_02105 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA IUJ48_02110 PF13091 PLD-like domain IUJ48_02115 PF01381 Helix-turn-helix IUJ48_02115 PF07883 Cupin domain IUJ48_02130 PF00561 alpha/beta hydrolase fold IUJ48_02135 PF03466 LysR substrate binding domain IUJ48_02135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_02160 PF03466 LysR substrate binding domain IUJ48_02160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_02180 PF00892 EamA-like transporter family IUJ48_02195 PF01515 Phosphate acetyl/butaryl transferase IUJ48_02195 PF03949 Malic enzyme, NAD binding domain IUJ48_02195 PF00390 Malic enzyme, N-terminal domain IUJ48_02210 PF04102 SlyX IUJ48_02215 PF07715 TonB-dependent Receptor Plug Domain IUJ48_02215 PF00593 TonB dependent receptor IUJ48_02220 PF04891 NifQ IUJ48_02225 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IUJ48_02230 PF00510 Cytochrome c oxidase subunit III IUJ48_02235 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ48_02240 PF06481 COX Aromatic Rich Motif IUJ48_02240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IUJ48_02245 PF00072 Response regulator receiver domain IUJ48_02250 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_02265 PF02630 SCO1/SenC IUJ48_02285 PF01476 LysM domain IUJ48_02285 PF01551 Peptidase family M23 IUJ48_02290 PF00005 ABC transporter IUJ48_02295 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_02300 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_02305 PF03576 Peptidase family S58 IUJ48_02310 PF03006 Haemolysin-III related IUJ48_02315 PF01037 Lrp/AsnC ligand binding domain IUJ48_02320 PF00266 Aminotransferase class-V IUJ48_02325 PF00324 Amino acid permease IUJ48_02330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_02330 PF03466 LysR substrate binding domain IUJ48_02340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_02340 PF03466 LysR substrate binding domain IUJ48_02355 PF08279 HTH domain IUJ48_02355 PF13280 WYL domain IUJ48_02370 PF08281 Sigma-70, region 4 IUJ48_02370 PF04542 Sigma-70 region 2 IUJ48_02375 PF04773 FecR protein IUJ48_02375 PF16220 Domain of unknown function (DUF4880) IUJ48_02385 PF05171 Haemin-degrading HemS.ChuX domain IUJ48_02390 PF01497 Periplasmic binding protein IUJ48_02395 PF01032 FecCD transport family IUJ48_02400 PF00005 ABC transporter IUJ48_02405 PF04461 Protein of unknown function (DUF520) IUJ48_02410 PF02805 Metal binding domain of Ada IUJ48_02410 PF06029 AlkA N-terminal domain IUJ48_02410 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ48_02410 PF12833 Helix-turn-helix domain IUJ48_02415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ48_02415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ48_02420 PF01569 PAP2 superfamily IUJ48_02425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_02425 PF07730 Histidine kinase IUJ48_02425 PF13492 GAF domain IUJ48_02430 PF00196 Bacterial regulatory proteins, luxR family IUJ48_02430 PF00072 Response regulator receiver domain IUJ48_02435 PF03960 ArsC family IUJ48_02445 PF07715 TonB-dependent Receptor Plug Domain IUJ48_02445 PF00593 TonB dependent receptor IUJ48_02455 PF00005 ABC transporter IUJ48_02460 PF00005 ABC transporter IUJ48_02460 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_02470 PF02653 Branched-chain amino acid transport system / permease component IUJ48_02480 PF01425 Amidase IUJ48_02485 PF02785 Biotin carboxylase C-terminal domain IUJ48_02485 PF00289 Biotin carboxylase, N-terminal domain IUJ48_02485 PF00364 Biotin-requiring enzyme IUJ48_02485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ48_02485 PF02785 Biotin carboxylase C-terminal domain IUJ48_02485 PF00289 Biotin carboxylase, N-terminal domain IUJ48_02485 PF00364 Biotin-requiring enzyme IUJ48_02485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ48_02490 PF07729 FCD domain IUJ48_02490 PF00392 Bacterial regulatory proteins, gntR family IUJ48_02500 PF04542 Sigma-70 region 2 IUJ48_02500 PF08281 Sigma-70, region 4 IUJ48_02510 PF00583 Acetyltransferase (GNAT) family IUJ48_02515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_02515 PF03466 LysR substrate binding domain IUJ48_02520 PF04303 PrpF protein IUJ48_02525 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_02545 PF00127 Copper binding proteins, plastocyanin/azurin family IUJ48_02550 PF07995 Glucose / Sorbosone dehydrogenase IUJ48_02555 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_02555 PF00175 Oxidoreductase NAD-binding domain IUJ48_02555 PF00970 Oxidoreductase FAD-binding domain IUJ48_02570 PF00486 Transcriptional regulatory protein, C terminal IUJ48_02570 PF00072 Response regulator receiver domain IUJ48_02575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_02580 PF00582 Universal stress protein family IUJ48_02585 PF00582 Universal stress protein family IUJ48_02590 PF01177 Asp/Glu/Hydantoin racemase IUJ48_02595 PF03466 LysR substrate binding domain IUJ48_02595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_02615 PF05175 Methyltransferase small domain IUJ48_02620 PF07690 Major Facilitator Superfamily IUJ48_02630 PF02634 FdhD/NarQ family IUJ48_02635 PF01568 Molydopterin dinucleotide binding domain IUJ48_02635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IUJ48_02635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ48_02635 PF12838 4Fe-4S dicluster domain IUJ48_02635 PF00384 Molybdopterin oxidoreductase IUJ48_02640 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IUJ48_02640 PF00037 4Fe-4S binding domain IUJ48_02640 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IUJ48_02655 PF06463 Molybdenum Cofactor Synthesis C IUJ48_02655 PF04055 Radical SAM superfamily IUJ48_02660 PF12804 MobA-like NTP transferase domain IUJ48_02665 PF00994 Probable molybdopterin binding domain IUJ48_02665 PF03453 MoeA N-terminal region (domain I and II) IUJ48_02665 PF03454 MoeA C-terminal region (domain IV) IUJ48_02670 PF00994 Probable molybdopterin binding domain IUJ48_02675 PF02391 MoaE protein IUJ48_02685 PF01967 MoaC family IUJ48_02695 PF01738 Dienelactone hydrolase family IUJ48_02705 PF08534 Redoxin IUJ48_02720 PF06968 Biotin and Thiamin Synthesis associated domain IUJ48_02720 PF04055 Radical SAM superfamily IUJ48_02725 PF00196 Bacterial regulatory proteins, luxR family IUJ48_02760 PF00248 Aldo/keto reductase family IUJ48_02765 PF00795 Carbon-nitrogen hydrolase IUJ48_02770 PF00571 CBS domain IUJ48_02770 PF03471 Transporter associated domain IUJ48_02775 PF02130 Uncharacterized protein family UPF0054 IUJ48_02780 PF02562 PhoH-like protein IUJ48_02785 PF04055 Radical SAM superfamily IUJ48_02785 PF01938 TRAM domain IUJ48_02785 PF00919 Uncharacterized protein family UPF0004 IUJ48_02795 PF02272 DHHA1 domain IUJ48_02795 PF01411 tRNA synthetases class II (A) IUJ48_02795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUJ48_02815 PF02355 Protein export membrane protein IUJ48_02815 PF07549 SecD/SecF GG Motif IUJ48_02820 PF07549 SecD/SecF GG Motif IUJ48_02820 PF13721 SecD export protein N-terminal TM region IUJ48_02820 PF02355 Protein export membrane protein IUJ48_02825 PF02699 Preprotein translocase subunit IUJ48_02830 PF04221 RelB antitoxin IUJ48_02840 PF01702 Queuine tRNA-ribosyltransferase IUJ48_02845 PF02547 Queuosine biosynthesis protein IUJ48_02855 PF00296 Luciferase-like monooxygenase IUJ48_02860 PF01613 Flavin reductase like domain IUJ48_02865 PF13458 Periplasmic binding protein IUJ48_02870 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IUJ48_02880 PF10414 Sirohaem synthase dimerisation region IUJ48_02880 PF14824 Sirohaem biosynthesis protein central IUJ48_02880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ48_02890 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_02895 PF00005 ABC transporter IUJ48_02905 PF05957 Bacterial protein of unknown function (DUF883) IUJ48_02920 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IUJ48_02925 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IUJ48_02925 PF01464 Transglycosylase SLT domain IUJ48_02940 PF00155 Aminotransferase class I and II IUJ48_02950 PF01515 Phosphate acetyl/butaryl transferase IUJ48_02950 PF00390 Malic enzyme, N-terminal domain IUJ48_02950 PF03949 Malic enzyme, NAD binding domain IUJ48_02955 PF01734 Patatin-like phospholipase IUJ48_02960 PF01337 Barstar (barnase inhibitor) IUJ48_02965 PF04452 RNA methyltransferase IUJ48_02975 PF02779 Transketolase, pyrimidine binding domain IUJ48_02975 PF02780 Transketolase, C-terminal domain IUJ48_02975 PF00456 Transketolase, thiamine diphosphate binding domain IUJ48_02980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUJ48_02980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUJ48_02985 PF00162 Phosphoglycerate kinase IUJ48_02990 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_02995 PF01740 STAS domain IUJ48_02995 PF00916 Sulfate permease family IUJ48_03005 PF00871 Acetokinase family IUJ48_03010 PF01515 Phosphate acetyl/butaryl transferase IUJ48_03015 PF11339 Protein of unknown function (DUF3141) IUJ48_03025 PF14834 Glutathione S-transferase, C-terminal domain IUJ48_03025 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_03035 PF00583 Acetyltransferase (GNAT) family IUJ48_03040 PF01556 DnaJ C terminal domain IUJ48_03040 PF00226 DnaJ domain IUJ48_03060 PF01384 Phosphate transporter family IUJ48_03070 PF00994 Probable molybdopterin binding domain IUJ48_03080 PF01476 LysM domain IUJ48_03080 PF08525 Opacity-associated protein A N-terminal motif IUJ48_03080 PF01551 Peptidase family M23 IUJ48_03090 PF01176 Translation initiation factor 1A / IF-1 IUJ48_03100 PF01022 Bacterial regulatory protein, arsR family IUJ48_03110 PF00005 ABC transporter IUJ48_03120 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_03130 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_03140 PF03466 LysR substrate binding domain IUJ48_03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_03150 PF06299 Protein of unknown function (DUF1045) IUJ48_03155 PF07969 Amidohydrolase family IUJ48_03160 PF00392 Bacterial regulatory proteins, gntR family IUJ48_03160 PF07702 UTRA domain IUJ48_03165 PF06754 Phosphonate metabolism protein PhnG IUJ48_03170 PF05845 Bacterial phosphonate metabolism protein (PhnH) IUJ48_03175 PF05861 Bacterial phosphonate metabolism protein (PhnI) IUJ48_03180 PF06007 Phosphonate metabolism protein PhnJ IUJ48_03185 PF00005 ABC transporter IUJ48_03190 PF00005 ABC transporter IUJ48_03195 PF07969 Amidohydrolase family IUJ48_03205 PF00375 Sodium:dicarboxylate symporter family IUJ48_03215 PF01116 Fructose-bisphosphate aldolase class-II IUJ48_03225 PF01259 SAICAR synthetase IUJ48_03235 PF02600 Disulfide bond formation protein DsbB IUJ48_03240 PF00731 AIR carboxylase IUJ48_03245 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IUJ48_03245 PF02222 ATP-grasp domain IUJ48_03250 PF03481 Putative GTP-binding controlling metal-binding IUJ48_03250 PF01300 Telomere recombination IUJ48_03255 PF01614 Bacterial transcriptional regulator IUJ48_03255 PF09339 IclR helix-turn-helix domain IUJ48_03260 PF01144 Coenzyme A transferase IUJ48_03265 PF01144 Coenzyme A transferase IUJ48_03270 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_03275 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_03280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_03280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_03285 PF00005 ABC transporter IUJ48_03290 PF00005 ABC transporter IUJ48_03290 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_03300 PF02653 Branched-chain amino acid transport system / permease component IUJ48_03315 PF00501 AMP-binding enzyme IUJ48_03315 PF13193 AMP-binding enzyme C-terminal domain IUJ48_03325 PF01202 Shikimate kinase IUJ48_03330 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03340 PF00037 4Fe-4S binding domain IUJ48_03340 PF00175 Oxidoreductase NAD-binding domain IUJ48_03340 PF00970 Oxidoreductase FAD-binding domain IUJ48_03365 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_03365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_03365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_03370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_03370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_03370 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ48_03375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_03375 PF03466 LysR substrate binding domain IUJ48_03380 PF02899 Phage integrase, N-terminal SAM-like domain IUJ48_03380 PF00589 Phage integrase family IUJ48_03385 PF04073 Aminoacyl-tRNA editing domain IUJ48_03390 PF01174 SNO glutamine amidotransferase family IUJ48_03395 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_03395 PF00107 Zinc-binding dehydrogenase IUJ48_03405 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ48_03415 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03420 PF13193 AMP-binding enzyme C-terminal domain IUJ48_03420 PF00501 AMP-binding enzyme IUJ48_03425 PF00682 HMGL-like IUJ48_03440 PF02515 CoA-transferase family III IUJ48_03445 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_03460 PF03060 Nitronate monooxygenase IUJ48_03480 PF00580 UvrD/REP helicase N-terminal domain IUJ48_03480 PF13361 UvrD-like helicase C-terminal domain IUJ48_03480 PF12705 PD-(D/E)XK nuclease superfamily IUJ48_03490 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IUJ48_03490 PF12170 DNA polymerase III tau subunit V interacting with alpha IUJ48_03490 PF12169 DNA polymerase III subunits gamma and tau domain III IUJ48_03495 PF02575 YbaB/EbfC DNA-binding family IUJ48_03500 PF02132 RecR protein IUJ48_03500 PF13662 Toprim domain IUJ48_03505 PF02515 CoA-transferase family III IUJ48_03515 PF00005 ABC transporter IUJ48_03520 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_03525 PF01126 Heme oxygenase IUJ48_03535 PF00072 Response regulator receiver domain IUJ48_03535 PF00486 Transcriptional regulatory protein, C terminal IUJ48_03540 PF00360 Phytochrome region IUJ48_03540 PF08446 PAS fold IUJ48_03540 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_03540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_03540 PF01590 GAF domain IUJ48_03550 PF00923 Transaldolase/Fructose-6-phosphate aldolase IUJ48_03555 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IUJ48_03555 PF00117 Glutamine amidotransferase class-I IUJ48_03560 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IUJ48_03560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ48_03560 PF02142 MGS-like domain IUJ48_03570 PF00106 short chain dehydrogenase IUJ48_03575 PF00300 Histidine phosphatase superfamily (branch 1) IUJ48_03580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_03580 PF03466 LysR substrate binding domain IUJ48_03585 PF00005 ABC transporter IUJ48_03585 PF08402 TOBE domain IUJ48_03590 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_03605 PF00860 Permease family IUJ48_03610 PF02203 Tar ligand binding domain homologue IUJ48_03610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_03610 PF00672 HAMP domain IUJ48_03615 PF03449 Transcription elongation factor, N-terminal IUJ48_03615 PF01272 Transcription elongation factor, GreA/GreB, C-term IUJ48_03620 PF01985 CRS1 / YhbY (CRM) domain IUJ48_03625 PF01728 FtsJ-like methyltransferase IUJ48_03630 PF01434 Peptidase family M41 IUJ48_03630 PF06480 FtsH Extracellular IUJ48_03630 PF17862 AAA+ lid domain IUJ48_03630 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_03635 PF00809 Pterin binding enzyme IUJ48_03640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ48_03640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ48_03640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ48_03640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ48_03650 PF02541 Ppx/GppA phosphatase family IUJ48_03655 PF13089 Polyphosphate kinase N-terminal domain IUJ48_03655 PF17941 Polyphosphate kinase C-terminal domain 1 IUJ48_03655 PF13090 Polyphosphate kinase C-terminal domain 2 IUJ48_03655 PF02503 Polyphosphate kinase middle domain IUJ48_03660 PF12849 PBP superfamily domain IUJ48_03665 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_03670 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_03675 PF00005 ABC transporter IUJ48_03680 PF07690 Major Facilitator Superfamily IUJ48_03695 PF03466 LysR substrate binding domain IUJ48_03695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_03700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_03700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_03700 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_03710 PF00108 Thiolase, N-terminal domain IUJ48_03710 PF02803 Thiolase, C-terminal domain IUJ48_03730 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_03730 PF00585 C-terminal regulatory domain of Threonine dehydratase IUJ48_03735 PF12802 MarR family IUJ48_03745 PF08659 KR domain IUJ48_03745 PF14765 Polyketide synthase dehydratase IUJ48_03745 PF00550 Phosphopantetheine attachment site IUJ48_03745 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ48_03745 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ48_03745 PF16197 Ketoacyl-synthetase C-terminal extension IUJ48_03745 PF00107 Zinc-binding dehydrogenase IUJ48_03745 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_03745 PF00698 Acyl transferase domain IUJ48_03750 PF07690 Major Facilitator Superfamily IUJ48_03755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ48_03755 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_03760 PF00501 AMP-binding enzyme IUJ48_03760 PF13193 AMP-binding enzyme C-terminal domain IUJ48_03770 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03775 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03780 PF00892 EamA-like transporter family IUJ48_03785 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03790 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_03790 PF12806 Acetyl-CoA dehydrogenase C-terminal like IUJ48_03790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_03790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_03830 PF01039 Carboxyl transferase domain IUJ48_03835 PF00364 Biotin-requiring enzyme IUJ48_03835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ48_03835 PF00289 Biotin carboxylase, N-terminal domain IUJ48_03835 PF02785 Biotin carboxylase C-terminal domain IUJ48_03840 PF02515 CoA-transferase family III IUJ48_03850 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_03860 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03865 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ48_03895 PF00005 ABC transporter IUJ48_03900 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_03900 PF00005 ABC transporter IUJ48_03910 PF02653 Branched-chain amino acid transport system / permease component IUJ48_03920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ48_03920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ48_03925 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_03930 PF03466 LysR substrate binding domain IUJ48_03935 PF01144 Coenzyme A transferase IUJ48_03940 PF01144 Coenzyme A transferase IUJ48_03945 PF14748 Pyrroline-5-carboxylate reductase dimerisation IUJ48_03945 PF03807 NADP oxidoreductase coenzyme F420-dependent IUJ48_03950 PF00440 Bacterial regulatory proteins, tetR family IUJ48_03960 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_03965 PF00266 Aminotransferase class-V IUJ48_03970 PF00392 Bacterial regulatory proteins, gntR family IUJ48_03970 PF00155 Aminotransferase class I and II IUJ48_03990 PF00534 Glycosyl transferases group 1 IUJ48_03990 PF13439 Glycosyltransferase Family 4 IUJ48_03995 PF02627 Carboxymuconolactone decarboxylase family IUJ48_04000 PF01810 LysE type translocator IUJ48_04010 PF04325 Protein of unknown function (DUF465) IUJ48_04020 PF00857 Isochorismatase family IUJ48_04025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04025 PF03466 LysR substrate binding domain IUJ48_04030 PF06719 AraC-type transcriptional regulator N-terminus IUJ48_04030 PF12833 Helix-turn-helix domain IUJ48_04035 PF00248 Aldo/keto reductase family IUJ48_04050 PF02469 Fasciclin domain IUJ48_04065 PF05724 Thiopurine S-methyltransferase (TPMT) IUJ48_04075 PF06434 Aconitate hydratase 2 N-terminus IUJ48_04075 PF11791 Aconitate B N-terminal domain IUJ48_04075 PF00330 Aconitase family (aconitate hydratase) IUJ48_04095 PF00571 CBS domain IUJ48_04110 PF05544 Proline racemase IUJ48_04115 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_04120 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_04125 PF08402 TOBE domain IUJ48_04125 PF00005 ABC transporter IUJ48_04145 PF13426 PAS domain IUJ48_04145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_04145 PF08447 PAS fold IUJ48_04175 PF12795 Mechanosensitive ion channel porin domain IUJ48_04175 PF12794 Mechanosensitive ion channel inner membrane domain 1 IUJ48_04175 PF00924 Mechanosensitive ion channel IUJ48_04180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04180 PF03466 LysR substrate binding domain IUJ48_04185 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain IUJ48_04185 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain IUJ48_04190 PF03466 LysR substrate binding domain IUJ48_04190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04230 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ48_04240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04240 PF03466 LysR substrate binding domain IUJ48_04255 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_04255 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_04265 PF07690 Major Facilitator Superfamily IUJ48_04275 PF01425 Amidase IUJ48_04295 PF00171 Aldehyde dehydrogenase family IUJ48_04310 PF09334 tRNA synthetases class I (M) IUJ48_04310 PF00133 tRNA synthetases class I (I, L, M and V) IUJ48_04310 PF08264 Anticodon-binding domain of tRNA IUJ48_04310 PF13603 Leucyl-tRNA synthetase, Domain 2 IUJ48_04315 PF07690 Major Facilitator Superfamily IUJ48_04320 PF12802 MarR family IUJ48_04335 PF07943 Penicillin-binding protein 5, C-terminal domain IUJ48_04335 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ48_04350 PF01740 STAS domain IUJ48_04350 PF00916 Sulfate permease family IUJ48_04355 PF00005 ABC transporter IUJ48_04355 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_04365 PF13458 Periplasmic binding protein IUJ48_04370 PF00471 Ribosomal protein L33 IUJ48_04375 PF00830 Ribosomal L28 family IUJ48_04380 PF07690 Major Facilitator Superfamily IUJ48_04395 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_04400 PF00005 ABC transporter IUJ48_04400 PF00571 CBS domain IUJ48_04405 PF01361 Tautomerase enzyme IUJ48_04410 PF00356 Bacterial regulatory proteins, lacI family IUJ48_04415 PF01370 NAD dependent epimerase/dehydratase family IUJ48_04420 PF10282 Lactonase, 7-bladed beta-propeller IUJ48_04425 PF02653 Branched-chain amino acid transport system / permease component IUJ48_04430 PF00005 ABC transporter IUJ48_04435 PF13407 Periplasmic binding protein domain IUJ48_04440 PF04966 Carbohydrate-selective porin, OprB family IUJ48_04445 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_04455 PF02515 CoA-transferase family III IUJ48_04460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04460 PF03466 LysR substrate binding domain IUJ48_04465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_04465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_04465 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_04470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_04470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_04470 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_04475 PF02803 Thiolase, C-terminal domain IUJ48_04475 PF00108 Thiolase, N-terminal domain IUJ48_04485 PF07729 FCD domain IUJ48_04485 PF00392 Bacterial regulatory proteins, gntR family IUJ48_04495 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_04500 PF13193 AMP-binding enzyme C-terminal domain IUJ48_04500 PF00501 AMP-binding enzyme IUJ48_04505 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_04510 PF00248 Aldo/keto reductase family IUJ48_04520 PF02653 Branched-chain amino acid transport system / permease component IUJ48_04525 PF00005 ABC transporter IUJ48_04530 PF01266 FAD dependent oxidoreductase IUJ48_04565 PF02675 S-adenosylmethionine decarboxylase IUJ48_04575 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_04580 PF00005 ABC transporter IUJ48_04580 PF08402 TOBE domain IUJ48_04585 PF03459 TOBE domain IUJ48_04585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_04605 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_04610 PF00873 AcrB/AcrD/AcrF family IUJ48_04615 PF02321 Outer membrane efflux protein IUJ48_04620 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IUJ48_04625 PF01648 4'-phosphopantetheinyl transferase superfamily IUJ48_04630 PF00933 Glycosyl hydrolase family 3 N terminal domain IUJ48_04635 PF01541 GIY-YIG catalytic domain IUJ48_04635 PF02151 UvrB/uvrC motif IUJ48_04635 PF08459 UvrC Helix-hairpin-helix N-terminal IUJ48_04640 PF01066 CDP-alcohol phosphatidyltransferase IUJ48_04650 PF00180 Isocitrate/isopropylmalate dehydrogenase IUJ48_04655 PF03466 LysR substrate binding domain IUJ48_04655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04660 PF03150 Di-haem cytochrome c peroxidase IUJ48_04660 PF00034 Cytochrome c IUJ48_04665 PF14489 QueF-like protein IUJ48_04665 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IUJ48_04670 PF00463 Isocitrate lyase family IUJ48_04690 PF00561 alpha/beta hydrolase fold IUJ48_04695 PF00155 Aminotransferase class I and II IUJ48_04700 PF00202 Aminotransferase class-III IUJ48_04715 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ48_04730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_04730 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IUJ48_04735 PF13746 4Fe-4S dicluster domain IUJ48_04735 PF12801 4Fe-4S binding domain IUJ48_04735 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IUJ48_04750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04750 PF03466 LysR substrate binding domain IUJ48_04755 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_04760 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IUJ48_04765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IUJ48_04765 PF13378 Enolase C-terminal domain-like IUJ48_04770 PF00701 Dihydrodipicolinate synthetase family IUJ48_04780 PF00171 Aldehyde dehydrogenase family IUJ48_04785 PF00005 ABC transporter IUJ48_04790 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_04795 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_04800 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_04805 PF01266 FAD dependent oxidoreductase IUJ48_04865 PF04229 GrpB protein IUJ48_04870 PF00392 Bacterial regulatory proteins, gntR family IUJ48_04870 PF00155 Aminotransferase class I and II IUJ48_04875 PF09335 SNARE associated Golgi protein IUJ48_04880 PF13609 Gram-negative porin IUJ48_04885 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IUJ48_04885 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain IUJ48_04890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_04895 PF00005 ABC transporter IUJ48_04895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_04900 PF00005 ABC transporter IUJ48_04900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_04905 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_04905 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_04910 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_04915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_04915 PF03466 LysR substrate binding domain IUJ48_04920 PF02566 OsmC-like protein IUJ48_04925 PF00672 HAMP domain IUJ48_04925 PF16527 Two-component sensor protein CpxA, periplasmic domain IUJ48_04925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_04925 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_04930 PF00072 Response regulator receiver domain IUJ48_04930 PF00486 Transcriptional regulatory protein, C terminal IUJ48_04940 PF00578 AhpC/TSA family IUJ48_04940 PF02683 Cytochrome C biogenesis protein transmembrane region IUJ48_04940 PF17991 Thioredoxin like C-terminal domain IUJ48_04945 PF02683 Cytochrome C biogenesis protein transmembrane region IUJ48_04945 PF00578 AhpC/TSA family IUJ48_04945 PF17991 Thioredoxin like C-terminal domain IUJ48_04955 PF00595 PDZ domain IUJ48_04965 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_04970 PF07729 FCD domain IUJ48_04970 PF00392 Bacterial regulatory proteins, gntR family IUJ48_04985 PF04542 Sigma-70 region 2 IUJ48_04985 PF08281 Sigma-70, region 4 IUJ48_04995 PF00593 TonB dependent receptor IUJ48_04995 PF07715 TonB-dependent Receptor Plug Domain IUJ48_05005 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ48_05005 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ48_05010 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_05025 PF13091 PLD-like domain IUJ48_05035 PF12167 Arm DNA-binding domain IUJ48_05035 PF00589 Phage integrase family IUJ48_05080 PF03592 Terminase small subunit IUJ48_05105 PF01810 LysE type translocator IUJ48_05110 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_05115 PF00672 HAMP domain IUJ48_05115 PF02203 Tar ligand binding domain homologue IUJ48_05115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_05120 PF12445 Flagellin protein IUJ48_05120 PF00669 Bacterial flagellin N-terminal helical region IUJ48_05120 PF00700 Bacterial flagellin C-terminal helical region IUJ48_05130 PF00723 Glycosyl hydrolases family 15 IUJ48_05140 PF07715 TonB-dependent Receptor Plug Domain IUJ48_05140 PF00593 TonB dependent receptor IUJ48_05165 PF03797 Autotransporter beta-domain IUJ48_05165 PF00082 Subtilase family IUJ48_05175 PF13953 PapC C-terminal domain IUJ48_05175 PF13954 PapC N-terminal domain IUJ48_05175 PF00577 Outer membrane usher protein IUJ48_05180 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ48_05210 PF00072 Response regulator receiver domain IUJ48_05210 PF00196 Bacterial regulatory proteins, luxR family IUJ48_05215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_05215 PF00072 Response regulator receiver domain IUJ48_05215 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_05215 PF09456 RcsC Alpha-Beta-Loop (ABL) IUJ48_05220 PF00563 EAL domain IUJ48_05220 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_05220 PF03707 Bacterial signalling protein N terminal repeat IUJ48_05220 PF13188 PAS domain IUJ48_05235 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ48_05235 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ48_05240 PF13953 PapC C-terminal domain IUJ48_05240 PF00577 Outer membrane usher protein IUJ48_05240 PF13954 PapC N-terminal domain IUJ48_05250 PF01925 Sulfite exporter TauE/SafE IUJ48_05255 PF00486 Transcriptional regulatory protein, C terminal IUJ48_05255 PF00072 Response regulator receiver domain IUJ48_05260 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_05260 PF08521 Two-component sensor kinase N-terminal IUJ48_05260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_05265 PF02195 ParB-like nuclease domain IUJ48_05275 PF11922 Domain of unknown function (DUF3440) IUJ48_05275 PF01507 Phosphoadenosine phosphosulfate reductase family IUJ48_05280 PF01588 Putative tRNA binding domain IUJ48_05340 PF04228 Putative neutral zinc metallopeptidase IUJ48_05345 PF01300 Telomere recombination IUJ48_05350 PF02163 Peptidase family M50 IUJ48_05355 PF00701 Dihydrodipicolinate synthetase family IUJ48_05360 PF06804 NlpB/DapX lipoprotein IUJ48_05370 PF08007 Cupin superfamily protein IUJ48_05375 PF05188 MutS domain II IUJ48_05375 PF05190 MutS family domain IV IUJ48_05375 PF00488 MutS domain V IUJ48_05375 PF01624 MutS domain I IUJ48_05375 PF05192 MutS domain III IUJ48_05430 PF00107 Zinc-binding dehydrogenase IUJ48_05430 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_05435 PF00106 short chain dehydrogenase IUJ48_05440 PF03466 LysR substrate binding domain IUJ48_05440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_05450 PF07311 Dodecin IUJ48_05455 PF03358 NADPH-dependent FMN reductase IUJ48_05470 PF00392 Bacterial regulatory proteins, gntR family IUJ48_05470 PF07729 FCD domain IUJ48_05475 PF01425 Amidase IUJ48_05485 PF00005 ABC transporter IUJ48_05490 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_05495 PF09084 NMT1/THI5 like IUJ48_05500 PF03466 LysR substrate binding domain IUJ48_05500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_05510 PF00083 Sugar (and other) transporter IUJ48_05535 PF00924 Mechanosensitive ion channel IUJ48_05535 PF05552 Conserved TM helix IUJ48_05545 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_05550 PF00588 SpoU rRNA Methylase family IUJ48_05555 PF00459 Inositol monophosphatase family IUJ48_05560 PF06250 YhcG PDDEXK nuclease domain IUJ48_05560 PF17761 DUF1016 N-terminal domain IUJ48_05565 PF02424 ApbE family IUJ48_05575 PF12679 ABC-2 family transporter protein IUJ48_05580 PF00005 ABC transporter IUJ48_05585 PF05048 Periplasmic copper-binding protein (NosD) IUJ48_05590 PF18793 Nitrous oxide reductase propeller repeat 2 IUJ48_05590 PF18764 Nitrous oxide reductase propeller repeat IUJ48_05590 PF13473 Cupredoxin-like domain IUJ48_05595 PF12801 4Fe-4S binding domain IUJ48_05595 PF04205 FMN-binding domain IUJ48_05600 PF00127 Copper binding proteins, plastocyanin/azurin family IUJ48_05605 PF03471 Transporter associated domain IUJ48_05605 PF03741 Integral membrane protein TerC family IUJ48_05610 PF02673 Bacitracin resistance protein BacA IUJ48_05615 PF00149 Calcineurin-like phosphoesterase IUJ48_05620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IUJ48_05630 PF09190 DALR domain IUJ48_05630 PF01406 tRNA synthetases class I (C) catalytic domain IUJ48_05640 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IUJ48_05645 PF01171 PP-loop family IUJ48_05645 PF09179 TilS substrate binding domain IUJ48_05650 PF01842 ACT domain IUJ48_05650 PF13840 ACT domain IUJ48_05650 PF00696 Amino acid kinase family IUJ48_05680 PF13746 4Fe-4S dicluster domain IUJ48_05680 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IUJ48_05680 PF12801 4Fe-4S binding domain IUJ48_05685 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IUJ48_05685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_05700 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ48_05715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_05720 PF00034 Cytochrome c IUJ48_05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_05735 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_05735 PF09456 RcsC Alpha-Beta-Loop (ABL) IUJ48_05735 PF00072 Response regulator receiver domain IUJ48_05740 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_05740 PF00563 EAL domain IUJ48_05740 PF03707 Bacterial signalling protein N terminal repeat IUJ48_05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_05745 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_05745 PF09456 RcsC Alpha-Beta-Loop (ABL) IUJ48_05745 PF00072 Response regulator receiver domain IUJ48_05755 PF00581 Rhodanese-like domain IUJ48_05760 PF00293 NUDIX domain IUJ48_05765 PF04185 Phosphoesterase family IUJ48_05770 PF17932 Tetracyclin repressor-like, C-terminal domain IUJ48_05770 PF00440 Bacterial regulatory proteins, tetR family IUJ48_05775 PF12857 TOBE-like domain IUJ48_05775 PF00005 ABC transporter IUJ48_05805 PF03466 LysR substrate binding domain IUJ48_05805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_05825 PF02146 Sir2 family IUJ48_05830 PF05995 Cysteine dioxygenase type I IUJ48_05835 PF01614 Bacterial transcriptional regulator IUJ48_05835 PF09339 IclR helix-turn-helix domain IUJ48_05840 PF02515 CoA-transferase family III IUJ48_05850 PF01144 Coenzyme A transferase IUJ48_05855 PF01144 Coenzyme A transferase IUJ48_05865 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IUJ48_05870 PF17042 Nucleotide-binding C-terminal domain IUJ48_05870 PF07005 Sugar-binding N-terminal domain IUJ48_05875 PF03812 2-keto-3-deoxygluconate permease IUJ48_05880 PF00664 ABC transporter transmembrane region IUJ48_05880 PF00005 ABC transporter IUJ48_05890 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_05895 PF16347 Domain of unknown function (DUF4976) IUJ48_05895 PF00884 Sulfatase IUJ48_05900 PF13193 AMP-binding enzyme C-terminal domain IUJ48_05900 PF00501 AMP-binding enzyme IUJ48_05915 PF00108 Thiolase, N-terminal domain IUJ48_05915 PF02803 Thiolase, C-terminal domain IUJ48_05920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_05920 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_05920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_05930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_05930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_05930 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_05935 PF02803 Thiolase, C-terminal domain IUJ48_05935 PF00108 Thiolase, N-terminal domain IUJ48_05940 PF09317 Domain of unknown function (DUF1974) IUJ48_05940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_05940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_05945 PF08361 MAATS-type transcriptional repressor, C-terminal region IUJ48_05945 PF00440 Bacterial regulatory proteins, tetR family IUJ48_05955 PF00196 Bacterial regulatory proteins, luxR family IUJ48_05955 PF00072 Response regulator receiver domain IUJ48_05960 PF00072 Response regulator receiver domain IUJ48_05960 PF00196 Bacterial regulatory proteins, luxR family IUJ48_05965 PF00534 Glycosyl transferases group 1 IUJ48_05965 PF13579 Glycosyl transferase 4-like domain IUJ48_05970 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_05975 PF00535 Glycosyl transferase family 2 IUJ48_05980 PF13439 Glycosyltransferase Family 4 IUJ48_05980 PF00534 Glycosyl transferases group 1 IUJ48_05990 PF00535 Glycosyl transferase family 2 IUJ48_06000 PF01370 NAD dependent epimerase/dehydratase family IUJ48_06005 PF16363 GDP-mannose 4,6 dehydratase IUJ48_06015 PF01050 Mannose-6-phosphate isomerase IUJ48_06015 PF00483 Nucleotidyl transferase IUJ48_06020 PF00293 NUDIX domain IUJ48_06025 PF02397 Bacterial sugar transferase IUJ48_06030 PF02563 Polysaccharide biosynthesis/export protein IUJ48_06030 PF10531 SLBB domain IUJ48_06035 PF13614 AAA domain IUJ48_06035 PF02706 Chain length determinant protein IUJ48_06035 PF13807 G-rich domain on putative tyrosine kinase IUJ48_06040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ48_06040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ48_06040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ48_06040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ48_06045 PF00342 Phosphoglucose isomerase IUJ48_06050 PF16363 GDP-mannose 4,6 dehydratase IUJ48_06055 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_06060 PF02146 Sir2 family IUJ48_06065 PF00459 Inositol monophosphatase family IUJ48_06070 PF00171 Aldehyde dehydrogenase family IUJ48_06075 PF00202 Aminotransferase class-III IUJ48_06080 PF00155 Aminotransferase class I and II IUJ48_06080 PF00392 Bacterial regulatory proteins, gntR family IUJ48_06090 PF13361 UvrD-like helicase C-terminal domain IUJ48_06090 PF00580 UvrD/REP helicase N-terminal domain IUJ48_06095 PF01544 CorA-like Mg2+ transporter protein IUJ48_06110 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_06115 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_06115 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_06120 PF00005 ABC transporter IUJ48_06120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_06125 PF01047 MarR family IUJ48_06135 PF08479 POTRA domain, ShlB-type IUJ48_06135 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IUJ48_06140 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_06140 PF00563 EAL domain IUJ48_06140 PF03707 Bacterial signalling protein N terminal repeat IUJ48_06170 PF04972 BON domain IUJ48_06170 PF00263 Bacterial type II and III secretion system protein IUJ48_06170 PF13629 Pilus formation protein N terminal region IUJ48_06180 PF00437 Type II/IV secretion system protein IUJ48_06210 PF00158 Sigma-54 interaction domain IUJ48_06210 PF02954 Bacterial regulatory protein, Fis family IUJ48_06210 PF00072 Response regulator receiver domain IUJ48_06225 PF09285 Elongation factor P, C-terminal IUJ48_06225 PF08207 Elongation factor P (EF-P) KOW-like domain IUJ48_06225 PF01132 Elongation factor P (EF-P) OB domain IUJ48_06240 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IUJ48_06245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_06245 PF03466 LysR substrate binding domain IUJ48_06255 PF07690 Major Facilitator Superfamily IUJ48_06260 PF13533 Biotin-lipoyl like IUJ48_06265 PF02321 Outer membrane efflux protein IUJ48_06270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_06270 PF03466 LysR substrate binding domain IUJ48_06275 PF00691 OmpA family IUJ48_06275 PF01389 OmpA-like transmembrane domain IUJ48_06280 PF00330 Aconitase family (aconitate hydratase) IUJ48_06280 PF00694 Aconitase C-terminal domain IUJ48_06285 PF03466 LysR substrate binding domain IUJ48_06285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_06295 PF00501 AMP-binding enzyme IUJ48_06295 PF13193 AMP-binding enzyme C-terminal domain IUJ48_06300 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_06305 PF03466 LysR substrate binding domain IUJ48_06305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_06315 PF07715 TonB-dependent Receptor Plug Domain IUJ48_06315 PF00593 TonB dependent receptor IUJ48_06325 PF14765 Polyketide synthase dehydratase IUJ48_06325 PF00550 Phosphopantetheine attachment site IUJ48_06325 PF08659 KR domain IUJ48_06325 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ48_06325 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ48_06325 PF16197 Ketoacyl-synthetase C-terminal extension IUJ48_06325 PF00107 Zinc-binding dehydrogenase IUJ48_06325 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_06325 PF00698 Acyl transferase domain IUJ48_06330 PF00005 ABC transporter IUJ48_06335 PF00005 ABC transporter IUJ48_06335 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_06340 PF02653 Branched-chain amino acid transport system / permease component IUJ48_06345 PF13458 Periplasmic binding protein IUJ48_06355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_06355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_06360 PF05853 beta-keto acid cleavage enzyme IUJ48_06365 PF00465 Iron-containing alcohol dehydrogenase IUJ48_06370 PF07729 FCD domain IUJ48_06370 PF00392 Bacterial regulatory proteins, gntR family IUJ48_06375 PF00456 Transketolase, thiamine diphosphate binding domain IUJ48_06380 PF02779 Transketolase, pyrimidine binding domain IUJ48_06380 PF02780 Transketolase, C-terminal domain IUJ48_06385 PF08501 Shikimate dehydrogenase substrate binding domain IUJ48_06385 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IUJ48_06385 PF01488 Shikimate / quinate 5-dehydrogenase IUJ48_06390 PF05199 GMC oxidoreductase IUJ48_06390 PF00732 GMC oxidoreductase IUJ48_06395 PF13378 Enolase C-terminal domain-like IUJ48_06395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IUJ48_06400 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_06405 PF00005 ABC transporter IUJ48_06410 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_06415 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_06420 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IUJ48_06420 PF08666 SAF domain IUJ48_06435 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_06440 PF09339 IclR helix-turn-helix domain IUJ48_06440 PF01614 Bacterial transcriptional regulator IUJ48_06455 PF00561 alpha/beta hydrolase fold IUJ48_06465 PF00196 Bacterial regulatory proteins, luxR family IUJ48_06475 PF00027 Cyclic nucleotide-binding domain IUJ48_06475 PF13545 Crp-like helix-turn-helix domain IUJ48_06485 PF01032 FecCD transport family IUJ48_06490 PF00005 ABC transporter IUJ48_06505 PF00593 TonB dependent receptor IUJ48_06505 PF07715 TonB-dependent Receptor Plug Domain IUJ48_06520 PF07690 Major Facilitator Superfamily IUJ48_06520 PF00083 Sugar (and other) transporter IUJ48_06525 PF00155 Aminotransferase class I and II IUJ48_06525 PF00392 Bacterial regulatory proteins, gntR family IUJ48_06530 PF00202 Aminotransferase class-III IUJ48_06540 PF01546 Peptidase family M20/M25/M40 IUJ48_06540 PF07687 Peptidase dimerisation domain IUJ48_06550 PF01970 Tripartite tricarboxylate transporter TctA family IUJ48_06565 PF00989 PAS fold IUJ48_06565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_06565 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_06570 PF00072 Response regulator receiver domain IUJ48_06570 PF02954 Bacterial regulatory protein, Fis family IUJ48_06570 PF00158 Sigma-54 interaction domain IUJ48_06575 PF18146 Damage-inducible protein CinA KH domain IUJ48_06575 PF02464 Competence-damaged protein IUJ48_06575 PF00994 Probable molybdopterin binding domain IUJ48_06580 PF02735 Ku70/Ku80 beta-barrel domain IUJ48_06585 PF01068 ATP dependent DNA ligase domain IUJ48_06585 PF13298 DNA polymerase Ligase (LigD) IUJ48_06585 PF04679 ATP dependent DNA ligase C terminal region IUJ48_06590 PF00324 Amino acid permease IUJ48_06595 PF00128 Alpha amylase, catalytic domain IUJ48_06600 PF02446 4-alpha-glucanotransferase IUJ48_06605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ48_06605 PF00128 Alpha amylase, catalytic domain IUJ48_06605 PF11941 Domain of unknown function (DUF3459) IUJ48_06610 PF00128 Alpha amylase, catalytic domain IUJ48_06610 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ48_06615 PF00128 Alpha amylase, catalytic domain IUJ48_06615 PF02806 Alpha amylase, C-terminal all-beta domain IUJ48_06615 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ48_06620 PF16657 Maltogenic Amylase, C-terminal domain IUJ48_06620 PF00128 Alpha amylase, catalytic domain IUJ48_06625 PF11896 Domain of unknown function (DUF3416) IUJ48_06625 PF00128 Alpha amylase, catalytic domain IUJ48_06630 PF00534 Glycosyl transferases group 1 IUJ48_06630 PF08323 Starch synthase catalytic domain IUJ48_06635 PF03706 Lysylphosphatidylglycerol synthase TM region IUJ48_06640 PF13091 PLD-like domain IUJ48_06645 PF03372 Endonuclease/Exonuclease/phosphatase family IUJ48_06650 PF01699 Sodium/calcium exchanger protein IUJ48_06680 PF00342 Phosphoglucose isomerase IUJ48_06690 PF00924 Mechanosensitive ion channel IUJ48_06710 PF00005 ABC transporter IUJ48_06710 PF00664 ABC transporter transmembrane region IUJ48_06720 PF00534 Glycosyl transferases group 1 IUJ48_06720 PF13439 Glycosyltransferase Family 4 IUJ48_06740 PF16861 Carbamoyltransferase C-terminus IUJ48_06740 PF02543 Carbamoyltransferase N-terminus IUJ48_06760 PF16363 GDP-mannose 4,6 dehydratase IUJ48_06815 PF02567 Phenazine biosynthesis-like protein IUJ48_06830 PF00155 Aminotransferase class I and II IUJ48_06830 PF00392 Bacterial regulatory proteins, gntR family IUJ48_06835 PF12833 Helix-turn-helix domain IUJ48_06835 PF06719 AraC-type transcriptional regulator N-terminus IUJ48_06840 PF01799 [2Fe-2S] binding domain IUJ48_06840 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_06845 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IUJ48_06850 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_06850 PF14602 Hexapeptide repeat of succinyl-transferase IUJ48_06850 PF12804 MobA-like NTP transferase domain IUJ48_06855 PF02625 XdhC and CoxI family IUJ48_06855 PF13478 XdhC Rossmann domain IUJ48_06865 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IUJ48_06865 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IUJ48_06865 PF01276 Orn/Lys/Arg decarboxylase, major domain IUJ48_06870 PF00392 Bacterial regulatory proteins, gntR family IUJ48_06870 PF00155 Aminotransferase class I and II IUJ48_06875 PF00117 Glutamine amidotransferase class-I IUJ48_06875 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IUJ48_06885 PF17042 Nucleotide-binding C-terminal domain IUJ48_06885 PF07005 Sugar-binding N-terminal domain IUJ48_06890 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain IUJ48_06890 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain IUJ48_06900 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_06905 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_06910 PF00356 Bacterial regulatory proteins, lacI family IUJ48_06925 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_06930 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IUJ48_06935 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_06950 PF00199 Catalase IUJ48_06950 PF06628 Catalase-related immune-responsive IUJ48_06950 PF18011 C-terminal domain found in long catalases IUJ48_06965 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IUJ48_06975 PF07859 alpha/beta hydrolase fold IUJ48_06980 PF01757 Acyltransferase family IUJ48_06985 PF00905 Penicillin binding protein transpeptidase domain IUJ48_06990 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ48_07000 PF03797 Autotransporter beta-domain IUJ48_07005 PF17151 Periplasmic sensor domain IUJ48_07005 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_07020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_07020 PF03466 LysR substrate binding domain IUJ48_07035 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_07040 PF13380 CoA binding domain IUJ48_07040 PF13607 Succinyl-CoA ligase like flavodoxin domain IUJ48_07045 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07075 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07085 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ48_07090 PF08671 Anti-repressor SinI IUJ48_07090 PF01381 Helix-turn-helix IUJ48_07150 PF01618 MotA/TolQ/ExbB proton channel family IUJ48_07155 PF02472 Biopolymer transport protein ExbD/TolR IUJ48_07180 PF09312 SurA N-terminal domain IUJ48_07180 PF00639 PPIC-type PPIASE domain IUJ48_07195 PF08543 Phosphomethylpyrimidine kinase IUJ48_07200 PF02560 Cyanate lyase C-terminal domain IUJ48_07205 PF00005 ABC transporter IUJ48_07210 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_07215 PF00005 ABC transporter IUJ48_07220 PF00072 Response regulator receiver domain IUJ48_07220 PF00196 Bacterial regulatory proteins, luxR family IUJ48_07225 PF07730 Histidine kinase IUJ48_07225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_07225 PF05231 MASE1 IUJ48_07230 PF00005 ABC transporter IUJ48_07235 PF01061 ABC-2 type transporter IUJ48_07240 PF13417 Glutathione S-transferase, N-terminal domain IUJ48_07250 PF00108 Thiolase, N-terminal domain IUJ48_07250 PF02803 Thiolase, C-terminal domain IUJ48_07260 PF00196 Bacterial regulatory proteins, luxR family IUJ48_07260 PF00072 Response regulator receiver domain IUJ48_07265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_07275 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_07280 PF00501 AMP-binding enzyme IUJ48_07280 PF13193 AMP-binding enzyme C-terminal domain IUJ48_07295 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_07295 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ48_07295 PF00550 Phosphopantetheine attachment site IUJ48_07295 PF16197 Ketoacyl-synthetase C-terminal extension IUJ48_07295 PF00698 Acyl transferase domain IUJ48_07295 PF08659 KR domain IUJ48_07295 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ48_07295 PF14765 Polyketide synthase dehydratase IUJ48_07310 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IUJ48_07310 PF00355 Rieske [2Fe-2S] domain IUJ48_07340 PF00313 'Cold-shock' DNA-binding domain IUJ48_07350 PF03006 Haemolysin-III related IUJ48_07360 PF10503 Esterase PHB depolymerase IUJ48_07370 PF18029 Glyoxalase-like domain IUJ48_07380 PF12833 Helix-turn-helix domain IUJ48_07380 PF02805 Metal binding domain of Ada IUJ48_07385 PF07690 Major Facilitator Superfamily IUJ48_07390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_07390 PF03466 LysR substrate binding domain IUJ48_07395 PF07728 AAA domain (dynein-related subfamily) IUJ48_07400 PF02146 Sir2 family IUJ48_07420 PF00350 Dynamin family IUJ48_07450 PF04261 Dyp-type peroxidase family IUJ48_07460 PF00175 Oxidoreductase NAD-binding domain IUJ48_07460 PF00970 Oxidoreductase FAD-binding domain IUJ48_07460 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_07465 PF00155 Aminotransferase class I and II IUJ48_07465 PF00392 Bacterial regulatory proteins, gntR family IUJ48_07470 PF02567 Phenazine biosynthesis-like protein IUJ48_07480 PF01266 FAD dependent oxidoreductase IUJ48_07485 PF00144 Beta-lactamase IUJ48_07490 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_07490 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_07495 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IUJ48_07495 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IUJ48_07505 PF07690 Major Facilitator Superfamily IUJ48_07515 PF03180 NLPA lipoprotein IUJ48_07520 PF09383 NIL domain IUJ48_07520 PF00005 ABC transporter IUJ48_07525 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_07530 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_07545 PF03976 Polyphosphate kinase 2 (PPK2) IUJ48_07550 PF01479 S4 domain IUJ48_07555 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_07555 PF00563 EAL domain IUJ48_07555 PF03707 Bacterial signalling protein N terminal repeat IUJ48_07560 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07565 PF04909 Amidohydrolase IUJ48_07570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_07570 PF03466 LysR substrate binding domain IUJ48_07575 PF00005 ABC transporter IUJ48_07575 PF06472 ABC transporter transmembrane region 2 IUJ48_07580 PF03447 Homoserine dehydrogenase, NAD binding domain IUJ48_07580 PF01958 Domain of unknown function DUF108 IUJ48_07595 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07600 PF01546 Peptidase family M20/M25/M40 IUJ48_07600 PF07687 Peptidase dimerisation domain IUJ48_07605 PF07690 Major Facilitator Superfamily IUJ48_07615 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07620 PF00135 Carboxylesterase family IUJ48_07625 PF00962 Adenosine/AMP deaminase IUJ48_07630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_07630 PF03466 LysR substrate binding domain IUJ48_07640 PF13406 Transglycosylase SLT domain IUJ48_07650 PF13673 Acetyltransferase (GNAT) domain IUJ48_07650 PF00958 GMP synthase C terminal domain IUJ48_07650 PF00117 Glutamine amidotransferase class-I IUJ48_07650 PF13302 Acetyltransferase (GNAT) domain IUJ48_07650 PF03352 Methyladenine glycosylase IUJ48_07660 PF00593 TonB dependent receptor IUJ48_07660 PF07715 TonB-dependent Receptor Plug Domain IUJ48_07670 PF08281 Sigma-70, region 4 IUJ48_07670 PF04542 Sigma-70 region 2 IUJ48_07685 PF13302 Acetyltransferase (GNAT) domain IUJ48_07685 PF00117 Glutamine amidotransferase class-I IUJ48_07685 PF00958 GMP synthase C terminal domain IUJ48_07685 PF03352 Methyladenine glycosylase IUJ48_07685 PF13673 Acetyltransferase (GNAT) domain IUJ48_07695 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_07695 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_07700 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_07705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_07710 PF00005 ABC transporter IUJ48_07710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_07720 PF01037 Lrp/AsnC ligand binding domain IUJ48_07720 PF13404 AsnC-type helix-turn-helix domain IUJ48_07740 PF03069 Acetamidase/Formamidase family IUJ48_07765 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07770 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_07780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_07785 PF03737 Aldolase/RraA IUJ48_07790 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07795 PF04909 Amidohydrolase IUJ48_07800 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_07815 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_07815 PF13417 Glutathione S-transferase, N-terminal domain IUJ48_07825 PF00857 Isochorismatase family IUJ48_07830 PF12843 Putative quorum-sensing-regulated virulence factor IUJ48_07840 PF07690 Major Facilitator Superfamily IUJ48_07845 PF01965 DJ-1/PfpI family IUJ48_07850 PF12833 Helix-turn-helix domain IUJ48_07855 PF07715 TonB-dependent Receptor Plug Domain IUJ48_07855 PF00593 TonB dependent receptor IUJ48_07860 PF07715 TonB-dependent Receptor Plug Domain IUJ48_07860 PF00593 TonB dependent receptor IUJ48_07875 PF00012 Hsp70 protein IUJ48_07880 PF03466 LysR substrate binding domain IUJ48_07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_07885 PF00293 NUDIX domain IUJ48_07905 PF00083 Sugar (and other) transporter IUJ48_07915 PF00027 Cyclic nucleotide-binding domain IUJ48_07915 PF13545 Crp-like helix-turn-helix domain IUJ48_07925 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ48_07925 PF02861 Clp amino terminal domain, pathogenicity island component IUJ48_07925 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_07925 PF07724 AAA domain (Cdc48 subfamily) IUJ48_07925 PF17871 AAA lid domain IUJ48_07955 PF09370 Phosphoenolpyruvate hydrolase-like IUJ48_07965 PF03466 LysR substrate binding domain IUJ48_07965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_07970 PF07969 Amidohydrolase family IUJ48_07985 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IUJ48_08005 PF01168 Alanine racemase, N-terminal domain IUJ48_08005 PF00842 Alanine racemase, C-terminal domain IUJ48_08015 PF03328 HpcH/HpaI aldolase/citrate lyase family IUJ48_08020 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_08025 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_08030 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_08035 PF00171 Aldehyde dehydrogenase family IUJ48_08040 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IUJ48_08055 PF18073 Rubredoxin metal binding domain IUJ48_08070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_08070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_08075 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_08080 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_08090 PF07729 FCD domain IUJ48_08090 PF00392 Bacterial regulatory proteins, gntR family IUJ48_08095 PF02615 Malate/L-lactate dehydrogenase IUJ48_08100 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_08105 PF03328 HpcH/HpaI aldolase/citrate lyase family IUJ48_08110 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ48_08110 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IUJ48_08115 PF03466 LysR substrate binding domain IUJ48_08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_08120 PF01649 Ribosomal protein S20 IUJ48_08130 PF03023 Lipid II flippase MurJ IUJ48_08135 PF00106 short chain dehydrogenase IUJ48_08140 PF05191 Adenylate kinase, active site lid IUJ48_08145 PF02348 Cytidylyltransferase IUJ48_08150 PF03966 Trm112p-like protein IUJ48_08155 PF07095 Intracellular growth attenuator protein IgaA IUJ48_08160 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IUJ48_08170 PF01618 MotA/TolQ/ExbB proton channel family IUJ48_08175 PF13742 OB-fold nucleic acid binding domain IUJ48_08175 PF02601 Exonuclease VII, large subunit IUJ48_08185 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IUJ48_08185 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IUJ48_08190 PF00672 HAMP domain IUJ48_08190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_08190 PF02203 Tar ligand binding domain homologue IUJ48_08195 PF00654 Voltage gated chloride channel IUJ48_08200 PF00108 Thiolase, N-terminal domain IUJ48_08200 PF02803 Thiolase, C-terminal domain IUJ48_08210 PF00313 'Cold-shock' DNA-binding domain IUJ48_08215 PF02617 ATP-dependent Clp protease adaptor protein ClpS IUJ48_08220 PF07703 Alpha-2-macroglobulin bait region domain IUJ48_08220 PF00207 Alpha-2-macroglobulin family IUJ48_08220 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain IUJ48_08220 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain IUJ48_08220 PF11974 Bacterial alpha-2-macroglobulin MG3 domain IUJ48_08220 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain IUJ48_08220 PF17962 Bacterial macroglobulin domain 6 IUJ48_08220 PF01835 MG2 domain IUJ48_08225 PF06832 Penicillin-Binding Protein C-terminus Family IUJ48_08225 PF00912 Transglycosylase IUJ48_08225 PF00905 Penicillin binding protein transpeptidase domain IUJ48_08230 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ48_08230 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_08230 PF07724 AAA domain (Cdc48 subfamily) IUJ48_08230 PF17871 AAA lid domain IUJ48_08230 PF02861 Clp amino terminal domain, pathogenicity island component IUJ48_08235 PF04403 Paraquat-inducible protein A IUJ48_08240 PF02470 MlaD protein IUJ48_08250 PF00171 Aldehyde dehydrogenase family IUJ48_08250 PF01619 Proline dehydrogenase IUJ48_08250 PF14850 DNA-binding domain of Proline dehydrogenase IUJ48_08250 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IUJ48_08255 PF13458 Periplasmic binding protein IUJ48_08260 PF02653 Branched-chain amino acid transport system / permease component IUJ48_08265 PF02653 Branched-chain amino acid transport system / permease component IUJ48_08265 PF11862 Domain of unknown function (DUF3382) IUJ48_08270 PF00005 ABC transporter IUJ48_08270 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_08275 PF00005 ABC transporter IUJ48_08280 PF07690 Major Facilitator Superfamily IUJ48_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_08295 PF03466 LysR substrate binding domain IUJ48_08300 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_08300 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_08305 PF00296 Luciferase-like monooxygenase IUJ48_08310 PF01566 Natural resistance-associated macrophage protein IUJ48_08315 PF02566 OsmC-like protein IUJ48_08320 PF02423 Ornithine cyclodeaminase/mu-crystallin family IUJ48_08330 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_08335 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_08340 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_08345 PF00005 ABC transporter IUJ48_08350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ48_08380 PF03575 Peptidase family S51 IUJ48_08395 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_08400 PF04127 DNA / pantothenate metabolism flavoprotein IUJ48_08400 PF02441 Flavoprotein IUJ48_08405 PF01252 Signal peptidase (SPase) II IUJ48_08410 PF00133 tRNA synthetases class I (I, L, M and V) IUJ48_08410 PF06827 Zinc finger found in FPG and IleRS IUJ48_08410 PF08264 Anticodon-binding domain of tRNA IUJ48_08415 PF06574 FAD synthetase IUJ48_08415 PF01687 Riboflavin kinase IUJ48_08420 PF00551 Formyl transferase IUJ48_08425 PF01189 16S rRNA methyltransferase RsmB/F IUJ48_08425 PF01029 NusB family IUJ48_08435 PF13542 Helix-turn-helix domain of transposase family ISL3 IUJ48_08435 PF01610 Transposase IUJ48_08435 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IUJ48_08440 PF00580 UvrD/REP helicase N-terminal domain IUJ48_08440 PF13361 UvrD-like helicase C-terminal domain IUJ48_08450 PF03150 Di-haem cytochrome c peroxidase IUJ48_08460 PF07715 TonB-dependent Receptor Plug Domain IUJ48_08470 PF07715 TonB-dependent Receptor Plug Domain IUJ48_08475 PF07715 TonB-dependent Receptor Plug Domain IUJ48_08490 PF00005 ABC transporter IUJ48_08490 PF12848 ABC transporter IUJ48_08495 PF05175 Methyltransferase small domain IUJ48_08500 PF07687 Peptidase dimerisation domain IUJ48_08500 PF01546 Peptidase family M20/M25/M40 IUJ48_08505 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IUJ48_08505 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_08505 PF14602 Hexapeptide repeat of succinyl-transferase IUJ48_08510 PF00155 Aminotransferase class I and II IUJ48_08530 PF12961 Domain of unknown function (DUF3850) IUJ48_08540 PF00145 C-5 cytosine-specific DNA methylase IUJ48_08585 PF02195 ParB-like nuclease domain IUJ48_08585 PF17762 HTH domain found in ParB protein IUJ48_08600 PF05067 Manganese containing catalase IUJ48_08605 PF05974 Domain of unknown function (DUF892) IUJ48_08630 PF00717 Peptidase S24-like IUJ48_08630 PF01726 LexA DNA binding domain IUJ48_08715 PF02413 Caudovirales tail fibre assembly protein, lambda gpK IUJ48_08730 PF00574 Clp protease IUJ48_08925 PF00083 Sugar (and other) transporter IUJ48_08930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUJ48_08930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IUJ48_08935 PF01266 FAD dependent oxidoreductase IUJ48_08935 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IUJ48_08940 PF02913 FAD linked oxidases, C-terminal domain IUJ48_08940 PF01565 FAD binding domain IUJ48_08950 PF00230 Major intrinsic protein IUJ48_08965 PF00793 DAHP synthetase I family IUJ48_08985 PF00440 Bacterial regulatory proteins, tetR family IUJ48_08985 PF08361 MAATS-type transcriptional repressor, C-terminal region IUJ48_09000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09000 PF03466 LysR substrate binding domain IUJ48_09005 PF14031 Putative serine dehydratase domain IUJ48_09005 PF01168 Alanine racemase, N-terminal domain IUJ48_09010 PF01042 Endoribonuclease L-PSP IUJ48_09035 PF00313 'Cold-shock' DNA-binding domain IUJ48_09045 PF00313 'Cold-shock' DNA-binding domain IUJ48_09050 PF03350 Uncharacterized protein family, UPF0114 IUJ48_09055 PF01435 Peptidase family M48 IUJ48_09060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ48_09060 PF05697 Bacterial trigger factor protein (TF) IUJ48_09060 PF05698 Bacterial trigger factor protein (TF) C-terminus IUJ48_09065 PF00574 Clp protease IUJ48_09070 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ48_09070 PF07724 AAA domain (Cdc48 subfamily) IUJ48_09070 PF06689 ClpX C4-type zinc finger IUJ48_09075 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_09075 PF05362 Lon protease (S16) C-terminal proteolytic domain IUJ48_09075 PF02190 ATP-dependent protease La (LON) substrate-binding domain IUJ48_09080 PF01726 LexA DNA binding domain IUJ48_09080 PF00717 Peptidase S24-like IUJ48_09085 PF00155 Aminotransferase class I and II IUJ48_09090 PF00271 Helicase conserved C-terminal domain IUJ48_09090 PF17757 UvrB interaction domain IUJ48_09090 PF12344 Ultra-violet resistance protein B IUJ48_09090 PF02151 UvrB/uvrC motif IUJ48_09090 PF04851 Type III restriction enzyme, res subunit IUJ48_09095 PF01451 Low molecular weight phosphotyrosine protein phosphatase IUJ48_09100 PF02082 Transcriptional regulator IUJ48_09105 PF00266 Aminotransferase class-V IUJ48_09110 PF01592 NifU-like N terminal domain IUJ48_09115 PF01521 Iron-sulphur cluster biosynthesis IUJ48_09120 PF07743 HSCB C-terminal oligomerisation domain IUJ48_09125 PF00012 Hsp70 protein IUJ48_09130 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_09135 PF04384 Iron-sulphur cluster assembly IUJ48_09140 PF02142 MGS-like domain IUJ48_09145 PF00593 TonB dependent receptor IUJ48_09145 PF07715 TonB-dependent Receptor Plug Domain IUJ48_09150 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_09155 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_09155 PF00005 ABC transporter IUJ48_09175 PF00005 ABC transporter IUJ48_09180 PF00501 AMP-binding enzyme IUJ48_09185 PF02803 Thiolase, C-terminal domain IUJ48_09185 PF00108 Thiolase, N-terminal domain IUJ48_09190 PF00440 Bacterial regulatory proteins, tetR family IUJ48_09190 PF17932 Tetracyclin repressor-like, C-terminal domain IUJ48_09195 PF01168 Alanine racemase, N-terminal domain IUJ48_09200 PF03594 Benzoate membrane transport protein IUJ48_09205 PF00155 Aminotransferase class I and II IUJ48_09205 PF00392 Bacterial regulatory proteins, gntR family IUJ48_09215 PF00152 tRNA synthetases class II (D, K and N) IUJ48_09215 PF01336 OB-fold nucleic acid binding domain IUJ48_09220 PF00106 short chain dehydrogenase IUJ48_09230 PF07690 Major Facilitator Superfamily IUJ48_09235 PF17768 RecJ OB domain IUJ48_09235 PF01368 DHH family IUJ48_09235 PF02272 DHHA1 domain IUJ48_09245 PF02687 FtsX-like permease family IUJ48_09245 PF12704 MacB-like periplasmic core domain IUJ48_09250 PF00005 ABC transporter IUJ48_09255 PF01026 TatD related DNase IUJ48_09260 PF00672 HAMP domain IUJ48_09260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_09260 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_09260 PF16750 Sensor domain of 2-component histidine kinase IUJ48_09265 PF00072 Response regulator receiver domain IUJ48_09265 PF00486 Transcriptional regulatory protein, C terminal IUJ48_09270 PF00593 TonB dependent receptor IUJ48_09270 PF07715 TonB-dependent Receptor Plug Domain IUJ48_09275 PF01497 Periplasmic binding protein IUJ48_09280 PF01032 FecCD transport family IUJ48_09285 PF01032 FecCD transport family IUJ48_09290 PF00005 ABC transporter IUJ48_09295 PF02872 5'-nucleotidase, C-terminal domain IUJ48_09295 PF00149 Calcineurin-like phosphoesterase IUJ48_09300 PF00593 TonB dependent receptor IUJ48_09300 PF07715 TonB-dependent Receptor Plug Domain IUJ48_09305 PF02110 Hydroxyethylthiazole kinase family IUJ48_09330 PF01613 Flavin reductase like domain IUJ48_09335 PF00005 ABC transporter IUJ48_09345 PF00106 short chain dehydrogenase IUJ48_09350 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_09365 PF00593 TonB dependent receptor IUJ48_09365 PF07660 Secretin and TonB N terminus short domain IUJ48_09365 PF07715 TonB-dependent Receptor Plug Domain IUJ48_09380 PF01810 LysE type translocator IUJ48_09390 PF00884 Sulfatase IUJ48_09405 PF13519 von Willebrand factor type A domain IUJ48_09425 PF07726 ATPase family associated with various cellular activities (AAA) IUJ48_09425 PF17863 AAA lid domain IUJ48_09430 PF03781 Sulfatase-modifying factor enzyme 1 IUJ48_09455 PF00011 Hsp20/alpha crystallin family IUJ48_09465 PF00118 TCP-1/cpn60 chaperonin family IUJ48_09470 PF00166 Chaperonin 10 Kd subunit IUJ48_09480 PF02525 Flavodoxin-like fold IUJ48_09505 PF01381 Helix-turn-helix IUJ48_09510 PF02656 Domain of unknown function (DUF202) IUJ48_09515 PF02656 Domain of unknown function (DUF202) IUJ48_09525 PF00171 Aldehyde dehydrogenase family IUJ48_09530 PF00355 Rieske [2Fe-2S] domain IUJ48_09535 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_09540 PF05199 GMC oxidoreductase IUJ48_09540 PF00732 GMC oxidoreductase IUJ48_09545 PF07702 UTRA domain IUJ48_09545 PF00392 Bacterial regulatory proteins, gntR family IUJ48_09550 PF00884 Sulfatase IUJ48_09560 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_09565 PF01565 FAD binding domain IUJ48_09565 PF09330 D-lactate dehydrogenase, membrane binding IUJ48_09570 PF00700 Bacterial flagellin C-terminal helical region IUJ48_09570 PF00669 Bacterial flagellin N-terminal helical region IUJ48_09580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09580 PF03466 LysR substrate binding domain IUJ48_09585 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_09590 PF00290 Tryptophan synthase alpha chain IUJ48_09595 PF00753 Metallo-beta-lactamase superfamily IUJ48_09595 PF03772 Competence protein IUJ48_09600 PF01546 Peptidase family M20/M25/M40 IUJ48_09600 PF07687 Peptidase dimerisation domain IUJ48_09605 PF00083 Sugar (and other) transporter IUJ48_09605 PF07690 Major Facilitator Superfamily IUJ48_09610 PF03466 LysR substrate binding domain IUJ48_09610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09620 PF03466 LysR substrate binding domain IUJ48_09625 PF00732 GMC oxidoreductase IUJ48_09625 PF05199 GMC oxidoreductase IUJ48_09645 PF02811 PHP domain IUJ48_09650 PF03449 Transcription elongation factor, N-terminal IUJ48_09650 PF01272 Transcription elongation factor, GreA/GreB, C-term IUJ48_09655 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_09660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_09660 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IUJ48_09670 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IUJ48_09670 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IUJ48_09670 PF02769 AIR synthase related protein, C-terminal domain IUJ48_09675 PF07715 TonB-dependent Receptor Plug Domain IUJ48_09675 PF00593 TonB dependent receptor IUJ48_09680 PF04773 FecR protein IUJ48_09680 PF16220 Domain of unknown function (DUF4880) IUJ48_09685 PF04542 Sigma-70 region 2 IUJ48_09685 PF08281 Sigma-70, region 4 IUJ48_09690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_09690 PF02203 Tar ligand binding domain homologue IUJ48_09690 PF00672 HAMP domain IUJ48_09705 PF00072 Response regulator receiver domain IUJ48_09705 PF00486 Transcriptional regulatory protein, C terminal IUJ48_09710 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_09710 PF08521 Two-component sensor kinase N-terminal IUJ48_09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_09715 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_09725 PF03466 LysR substrate binding domain IUJ48_09725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09735 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IUJ48_09745 PF00106 short chain dehydrogenase IUJ48_09750 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_09755 PF00701 Dihydrodipicolinate synthetase family IUJ48_09760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09760 PF03466 LysR substrate binding domain IUJ48_09765 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_09790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_09790 PF00072 Response regulator receiver domain IUJ48_09790 PF07495 Y_Y_Y domain IUJ48_09790 PF12833 Helix-turn-helix domain IUJ48_09790 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_09790 PF07494 Two component regulator propeller IUJ48_09795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_09795 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_09795 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_09795 PF00072 Response regulator receiver domain IUJ48_09800 PF03466 LysR substrate binding domain IUJ48_09800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09805 PF07690 Major Facilitator Superfamily IUJ48_09815 PF00440 Bacterial regulatory proteins, tetR family IUJ48_09835 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IUJ48_09845 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUJ48_09865 PF01636 Phosphotransferase enzyme family IUJ48_09885 PF03466 LysR substrate binding domain IUJ48_09885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09900 PF00593 TonB dependent receptor IUJ48_09900 PF07715 TonB-dependent Receptor Plug Domain IUJ48_09905 PF07715 TonB-dependent Receptor Plug Domain IUJ48_09905 PF00593 TonB dependent receptor IUJ48_09910 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_09910 PF00563 EAL domain IUJ48_09925 PF01070 FMN-dependent dehydrogenase IUJ48_09945 PF07715 TonB-dependent Receptor Plug Domain IUJ48_09945 PF07660 Secretin and TonB N terminus short domain IUJ48_09945 PF00593 TonB dependent receptor IUJ48_09965 PF03466 LysR substrate binding domain IUJ48_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_09970 PF03328 HpcH/HpaI aldolase/citrate lyase family IUJ48_09975 PF02515 CoA-transferase family III IUJ48_09985 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_09990 PF02627 Carboxymuconolactone decarboxylase family IUJ48_10040 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_10045 PF02615 Malate/L-lactate dehydrogenase IUJ48_10050 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_10055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_10055 PF03466 LysR substrate binding domain IUJ48_10070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_10075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_10075 PF00005 ABC transporter IUJ48_10080 PF00005 ABC transporter IUJ48_10080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_10085 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_10085 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_10090 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_10095 PF13454 FAD-NAD(P)-binding IUJ48_10100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_10100 PF03466 LysR substrate binding domain IUJ48_10155 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system IUJ48_10160 PF04381 Putative exonuclease, RdgC IUJ48_10460 PF01425 Amidase IUJ48_10465 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_10470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_10470 PF03466 LysR substrate binding domain IUJ48_10500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_10500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_10505 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_10510 PF03466 LysR substrate binding domain IUJ48_10535 PF00571 CBS domain IUJ48_10535 PF00478 IMP dehydrogenase / GMP reductase domain IUJ48_10540 PF00958 GMP synthase C terminal domain IUJ48_10540 PF00117 Glutamine amidotransferase class-I IUJ48_10540 PF02540 NAD synthase IUJ48_10600 PF01758 Sodium Bile acid symporter family IUJ48_10610 PF03358 NADPH-dependent FMN reductase IUJ48_10620 PF02796 Helix-turn-helix domain of resolvase IUJ48_10620 PF00239 Resolvase, N terminal domain IUJ48_10645 PF00809 Pterin binding enzyme IUJ48_10650 PF13356 Arm DNA-binding domain IUJ48_10650 PF00589 Phage integrase family IUJ48_10685 PF00665 Integrase core domain IUJ48_10690 PF01695 IstB-like ATP binding protein IUJ48_10725 PF04221 RelB antitoxin IUJ48_10730 PF06067 Domain of unknown function (DUF932) IUJ48_10735 PF17762 HTH domain found in ParB protein IUJ48_10735 PF02195 ParB-like nuclease domain IUJ48_10745 PF05284 Protein of unknown function (DUF736) IUJ48_10775 PF13614 AAA domain IUJ48_10790 PF10502 Signal peptidase, peptidase S26 IUJ48_10800 PF00462 Glutaredoxin IUJ48_10810 PF07690 Major Facilitator Superfamily IUJ48_10815 PF13411 MerR HTH family regulatory protein IUJ48_10820 PF02321 Outer membrane efflux protein IUJ48_10825 PF00873 AcrB/AcrD/AcrF family IUJ48_10830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_10835 PF01022 Bacterial regulatory protein, arsR family IUJ48_10840 PF01545 Cation efflux family IUJ48_10845 PF02583 Metal-sensitive transcriptional repressor IUJ48_10850 PF07690 Major Facilitator Superfamily IUJ48_10855 PF01022 Bacterial regulatory protein, arsR family IUJ48_10860 PF00403 Heavy-metal-associated domain IUJ48_10865 PF00376 MerR family regulatory protein IUJ48_10865 PF09278 MerR, DNA binding IUJ48_10870 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_10905 PF01734 Patatin-like phospholipase IUJ48_10925 PF00872 Transposase, Mutator family IUJ48_10930 PF07715 TonB-dependent Receptor Plug Domain IUJ48_10930 PF00593 TonB dependent receptor IUJ48_10940 PF04183 IucA / IucC family IUJ48_10940 PF06276 Ferric iron reductase FhuF-like transporter IUJ48_10965 PF08267 Cobalamin-independent synthase, N-terminal domain IUJ48_10965 PF01717 Cobalamin-independent synthase, Catalytic domain IUJ48_10975 PF03358 NADPH-dependent FMN reductase IUJ48_10980 PF03466 LysR substrate binding domain IUJ48_10980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_10985 PF02219 Methylenetetrahydrofolate reductase IUJ48_10990 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_10990 PF00107 Zinc-binding dehydrogenase IUJ48_11000 PF01022 Bacterial regulatory protein, arsR family IUJ48_11030 PF06719 AraC-type transcriptional regulator N-terminus IUJ48_11030 PF12833 Helix-turn-helix domain IUJ48_11035 PF00106 short chain dehydrogenase IUJ48_11045 PF00561 alpha/beta hydrolase fold IUJ48_11050 PF02311 AraC-like ligand binding domain IUJ48_11050 PF12833 Helix-turn-helix domain IUJ48_11070 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_11070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_11070 PF00672 HAMP domain IUJ48_11080 PF09278 MerR, DNA binding IUJ48_11080 PF00376 MerR family regulatory protein IUJ48_11085 PF03466 LysR substrate binding domain IUJ48_11085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_11095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_11095 PF03466 LysR substrate binding domain IUJ48_11100 PF14698 Argininosuccinate lyase C-terminal IUJ48_11100 PF00206 Lyase IUJ48_11105 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_11120 PF00581 Rhodanese-like domain IUJ48_11125 PF01965 DJ-1/PfpI family IUJ48_11130 PF03466 LysR substrate binding domain IUJ48_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_11135 PF07690 Major Facilitator Superfamily IUJ48_11145 PF13618 Gluconate 2-dehydrogenase subunit 3 IUJ48_11150 PF05199 GMC oxidoreductase IUJ48_11150 PF00732 GMC oxidoreductase IUJ48_11155 PF00034 Cytochrome c IUJ48_11155 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_11165 PF00893 Small Multidrug Resistance protein IUJ48_11185 PF00583 Acetyltransferase (GNAT) family IUJ48_11195 PF08774 VRR-NUC domain IUJ48_11195 PF18081 Fanconi anemia-associated nuclease SAP domain IUJ48_11210 PF07690 Major Facilitator Superfamily IUJ48_11215 PF03466 LysR substrate binding domain IUJ48_11215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_11220 PF00756 Putative esterase IUJ48_11220 PF11806 Domain of unknown function (DUF3327) IUJ48_11230 PF01425 Amidase IUJ48_11235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_11235 PF12729 Four helix bundle sensory module for signal transduction IUJ48_11235 PF00672 HAMP domain IUJ48_11255 PF01627 Hpt domain IUJ48_11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_11255 PF01584 CheW-like domain IUJ48_11255 PF00072 Response regulator receiver domain IUJ48_11260 PF00072 Response regulator receiver domain IUJ48_11260 PF01339 CheB methylesterase IUJ48_11265 PF00563 EAL domain IUJ48_11265 PF01590 GAF domain IUJ48_11265 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_11265 PF00360 Phytochrome region IUJ48_11270 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_11280 PF08402 TOBE domain IUJ48_11280 PF00005 ABC transporter IUJ48_11285 PF13609 Gram-negative porin IUJ48_11290 PF01037 Lrp/AsnC ligand binding domain IUJ48_11295 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_11300 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IUJ48_11300 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_11300 PF00034 Cytochrome c IUJ48_11305 PF00857 Isochorismatase family IUJ48_11315 PF00561 alpha/beta hydrolase fold IUJ48_11320 PF01494 FAD binding domain IUJ48_11325 PF01799 [2Fe-2S] binding domain IUJ48_11325 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_11330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_11330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IUJ48_11330 PF00034 Cytochrome c IUJ48_11335 PF07690 Major Facilitator Superfamily IUJ48_11340 PF12802 MarR family IUJ48_11345 PF07690 Major Facilitator Superfamily IUJ48_11350 PF03466 LysR substrate binding domain IUJ48_11350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_11365 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_11370 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_11375 PF00501 AMP-binding enzyme IUJ48_11375 PF13193 AMP-binding enzyme C-terminal domain IUJ48_11380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_11380 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_11380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_11385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_11385 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_11385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_11390 PF00108 Thiolase, N-terminal domain IUJ48_11390 PF02803 Thiolase, C-terminal domain IUJ48_11395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_11395 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_11395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_11400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_11400 PF03466 LysR substrate binding domain IUJ48_11425 PF00113 Enolase, C-terminal TIM barrel domain IUJ48_11425 PF03952 Enolase, N-terminal domain IUJ48_11430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_11430 PF03466 LysR substrate binding domain IUJ48_11435 PF04286 Protein of unknown function (DUF445) IUJ48_11440 PF00080 Copper/zinc superoxide dismutase (SODC) IUJ48_11445 PF13417 Glutathione S-transferase, N-terminal domain IUJ48_11445 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_11455 PF00557 Metallopeptidase family M24 IUJ48_11480 PF04972 BON domain IUJ48_11480 PF00691 OmpA family IUJ48_11490 PF06744 Type VI secretion protein IcmF C-terminal IUJ48_11490 PF06761 Intracellular multiplication and human macrophage-killing IUJ48_11490 PF14331 ImcF-related N-terminal domain IUJ48_11510 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IUJ48_11510 PF04717 Type VI secretion system, phage-baseplate injector IUJ48_11510 PF13296 Putative type VI secretion system Rhs element Vgr IUJ48_11535 PF04717 Type VI secretion system, phage-baseplate injector IUJ48_11535 PF06715 Gp5 C-terminal repeat (3 copies) IUJ48_11545 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IUJ48_11560 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IUJ48_11565 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IUJ48_11580 PF05947 Type VI secretion system, TssF IUJ48_11590 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ48_11590 PF07724 AAA domain (Cdc48 subfamily) IUJ48_11590 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_11590 PF17871 AAA lid domain IUJ48_11595 PF06715 Gp5 C-terminal repeat (3 copies) IUJ48_11595 PF04717 Type VI secretion system, phage-baseplate injector IUJ48_11625 PF03055 Retinal pigment epithelial membrane protein IUJ48_11635 PF00691 OmpA family IUJ48_11635 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ48_11660 PF14436 Bacterial EndoU nuclease IUJ48_11660 PF05594 Haemagluttinin repeat IUJ48_11660 PF13332 Hemagglutinin repeat IUJ48_11660 PF05860 haemagglutination activity domain IUJ48_11660 PF04829 Pre-toxin domain with VENN motif IUJ48_11665 PF13332 Hemagglutinin repeat IUJ48_11665 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain IUJ48_11665 PF13018 Extended Signal Peptide of Type V secretion system IUJ48_11665 PF05594 Haemagluttinin repeat IUJ48_11665 PF05860 haemagglutination activity domain IUJ48_11690 PF02515 CoA-transferase family III IUJ48_11695 PF00285 Citrate synthase, C-terminal domain IUJ48_11710 PF10127 RNA repair pathway DNA polymerase beta family IUJ48_11715 PF01047 MarR family IUJ48_11725 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_11725 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_11745 PF03466 LysR substrate binding domain IUJ48_11745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_11750 PF07690 Major Facilitator Superfamily IUJ48_11755 PF13419 Haloacid dehalogenase-like hydrolase IUJ48_11765 PF00892 EamA-like transporter family IUJ48_11775 PF04542 Sigma-70 region 2 IUJ48_11775 PF08281 Sigma-70, region 4 IUJ48_11785 PF03795 YCII-related domain IUJ48_11790 PF03795 YCII-related domain IUJ48_11795 PF01381 Helix-turn-helix IUJ48_11795 PF06114 IrrE N-terminal-like domain IUJ48_11795 PF09856 Predicted transcriptional regulator (DUF2083) IUJ48_11805 PF00691 OmpA family IUJ48_11805 PF05736 OprF membrane domain IUJ48_11810 PF01618 MotA/TolQ/ExbB proton channel family IUJ48_11825 PF02311 AraC-like ligand binding domain IUJ48_11825 PF12833 Helix-turn-helix domain IUJ48_11835 PF04463 Protein of unknown function (DUF523) IUJ48_11855 PF00440 Bacterial regulatory proteins, tetR family IUJ48_11860 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_11870 PF00248 Aldo/keto reductase family IUJ48_11875 PF07690 Major Facilitator Superfamily IUJ48_11875 PF00083 Sugar (and other) transporter IUJ48_11880 PF05199 GMC oxidoreductase IUJ48_11880 PF00732 GMC oxidoreductase IUJ48_11885 PF09339 IclR helix-turn-helix domain IUJ48_11885 PF01614 Bacterial transcriptional regulator IUJ48_11895 PF00891 O-methyltransferase domain IUJ48_11895 PF16864 Dimerisation domain IUJ48_11900 PF07715 TonB-dependent Receptor Plug Domain IUJ48_11900 PF00593 TonB dependent receptor IUJ48_11910 PF06772 Bacterial low temperature requirement A protein (LtrA) IUJ48_11915 PF07690 Major Facilitator Superfamily IUJ48_11920 PF06983 3-demethylubiquinone-9 3-methyltransferase IUJ48_11925 PF00795 Carbon-nitrogen hydrolase IUJ48_11930 PF00158 Sigma-54 interaction domain IUJ48_11930 PF13188 PAS domain IUJ48_11930 PF02954 Bacterial regulatory protein, Fis family IUJ48_11935 PF02653 Branched-chain amino acid transport system / permease component IUJ48_11940 PF00005 ABC transporter IUJ48_11940 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_11945 PF00005 ABC transporter IUJ48_11960 PF07364 Metallopeptidase family M81 IUJ48_11960 PF07171 MlrC C-terminus IUJ48_11965 PF02627 Carboxymuconolactone decarboxylase family IUJ48_12000 PF00672 HAMP domain IUJ48_12000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_12000 PF02203 Tar ligand binding domain homologue IUJ48_12025 PF01292 Prokaryotic cytochrome b561 IUJ48_12065 PF03466 LysR substrate binding domain IUJ48_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IUJ48_12080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IUJ48_12080 PF14572 Phosphoribosyl synthetase-associated domain IUJ48_12090 PF00248 Aldo/keto reductase family IUJ48_12095 PF03466 LysR substrate binding domain IUJ48_12095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12100 PF13411 MerR HTH family regulatory protein IUJ48_12100 PF07739 TipAS antibiotic-recognition domain IUJ48_12110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IUJ48_12110 PF07733 Bacterial DNA polymerase III alpha NTPase domain IUJ48_12110 PF14579 Helix-hairpin-helix motif IUJ48_12110 PF02811 PHP domain IUJ48_12125 PF02743 Cache domain IUJ48_12125 PF00672 HAMP domain IUJ48_12125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_12130 PF00324 Amino acid permease IUJ48_12135 PF02230 Phospholipase/Carboxylesterase IUJ48_12150 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_12155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_12155 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ48_12155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_12165 PF02321 Outer membrane efflux protein IUJ48_12170 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_12170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_12175 PF07869 Protein of unknown function (DUF1656) IUJ48_12180 PF04632 Fusaric acid resistance protein family IUJ48_12190 PF01242 6-pyruvoyl tetrahydropterin synthase IUJ48_12200 PF00271 Helicase conserved C-terminal domain IUJ48_12200 PF00270 DEAD/DEAH box helicase IUJ48_12200 PF03880 DbpA RNA binding domain IUJ48_12205 PF01614 Bacterial transcriptional regulator IUJ48_12205 PF09339 IclR helix-turn-helix domain IUJ48_12210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_12210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_12210 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ48_12215 PF01515 Phosphate acetyl/butaryl transferase IUJ48_12220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_12225 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_12230 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_12230 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_12235 PF00005 ABC transporter IUJ48_12235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_12240 PF01979 Amidohydrolase family IUJ48_12245 PF07683 Cobalamin synthesis protein cobW C-terminal domain IUJ48_12245 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUJ48_12255 PF01266 FAD dependent oxidoreductase IUJ48_12260 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ48_12265 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_12270 PF13018 Extended Signal Peptide of Type V secretion system IUJ48_12270 PF03797 Autotransporter beta-domain IUJ48_12270 PF03797 Autotransporter beta-domain IUJ48_12270 PF02395 Immunoglobulin A1 protease IUJ48_12270 PF13018 Extended Signal Peptide of Type V secretion system IUJ48_12270 PF02395 Immunoglobulin A1 protease IUJ48_12275 PF00155 Aminotransferase class I and II IUJ48_12275 PF00392 Bacterial regulatory proteins, gntR family IUJ48_12280 PF08281 Sigma-70, region 4 IUJ48_12280 PF04542 Sigma-70 region 2 IUJ48_12285 PF04773 FecR protein IUJ48_12285 PF16220 Domain of unknown function (DUF4880) IUJ48_12290 PF07715 TonB-dependent Receptor Plug Domain IUJ48_12290 PF00593 TonB dependent receptor IUJ48_12300 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_12305 PF00005 ABC transporter IUJ48_12310 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IUJ48_12315 PF03466 LysR substrate binding domain IUJ48_12315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12325 PF01227 GTP cyclohydrolase I IUJ48_12330 PF00196 Bacterial regulatory proteins, luxR family IUJ48_12330 PF00072 Response regulator receiver domain IUJ48_12335 PF17200 Single Cache domain 2 IUJ48_12335 PF07730 Histidine kinase IUJ48_12340 PF13722 5TM C-terminal transporter carbon starvation CstA IUJ48_12340 PF02554 Carbon starvation protein CstA IUJ48_12345 PF04328 Selenoprotein, putative IUJ48_12350 PF00892 EamA-like transporter family IUJ48_12355 PF00155 Aminotransferase class I and II IUJ48_12355 PF00392 Bacterial regulatory proteins, gntR family IUJ48_12385 PF00210 Ferritin-like domain IUJ48_12395 PF12951 Passenger-associated-transport-repeat IUJ48_12400 PF01625 Peptide methionine sulfoxide reductase IUJ48_12405 PF01641 SelR domain IUJ48_12415 PF00174 Oxidoreductase molybdopterin binding domain IUJ48_12420 PF01292 Prokaryotic cytochrome b561 IUJ48_12425 PF00072 Response regulator receiver domain IUJ48_12425 PF00486 Transcriptional regulatory protein, C terminal IUJ48_12430 PF18698 Histidine kinase sensor domain IUJ48_12430 PF00989 PAS fold IUJ48_12430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_12430 PF00672 HAMP domain IUJ48_12430 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_12435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IUJ48_12435 PF00391 PEP-utilising enzyme, mobile domain IUJ48_12445 PF03060 Nitronate monooxygenase IUJ48_12460 PF00368 Hydroxymethylglutaryl-coenzyme A reductase IUJ48_12465 PF00155 Aminotransferase class I and II IUJ48_12465 PF00392 Bacterial regulatory proteins, gntR family IUJ48_12495 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_12500 PF07687 Peptidase dimerisation domain IUJ48_12500 PF01546 Peptidase family M20/M25/M40 IUJ48_12505 PF03466 LysR substrate binding domain IUJ48_12505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12510 PF00873 AcrB/AcrD/AcrF family IUJ48_12515 PF00873 AcrB/AcrD/AcrF family IUJ48_12520 PF13533 Biotin-lipoyl like IUJ48_12525 PF03466 LysR substrate binding domain IUJ48_12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12530 PF01494 FAD binding domain IUJ48_12545 PF07690 Major Facilitator Superfamily IUJ48_12550 PF07690 Major Facilitator Superfamily IUJ48_12555 PF14710 Respiratory nitrate reductase alpha N-terminal IUJ48_12555 PF00384 Molybdopterin oxidoreductase IUJ48_12555 PF01568 Molydopterin dinucleotide binding domain IUJ48_12560 PF14711 Respiratory nitrate reductase beta C-terminal IUJ48_12560 PF13247 4Fe-4S dicluster domain IUJ48_12565 PF02613 Nitrate reductase delta subunit IUJ48_12570 PF02665 Nitrate reductase gamma subunit IUJ48_12575 PF00639 PPIC-type PPIASE domain IUJ48_12575 PF09312 SurA N-terminal domain IUJ48_12580 PF06463 Molybdenum Cofactor Synthesis C IUJ48_12580 PF04055 Radical SAM superfamily IUJ48_12585 PF00484 Carbonic anhydrase IUJ48_12590 PF03205 Molybdopterin guanine dinucleotide synthesis protein B IUJ48_12595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_12595 PF07730 Histidine kinase IUJ48_12595 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IUJ48_12595 PF00672 HAMP domain IUJ48_12600 PF00196 Bacterial regulatory proteins, luxR family IUJ48_12600 PF00072 Response regulator receiver domain IUJ48_12605 PF01136 Peptidase family U32 IUJ48_12610 PF01136 Peptidase family U32 IUJ48_12615 PF02036 SCP-2 sterol transfer family IUJ48_12620 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_12625 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_12635 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_12640 PF00561 alpha/beta hydrolase fold IUJ48_12645 PF02311 AraC-like ligand binding domain IUJ48_12645 PF12833 Helix-turn-helix domain IUJ48_12660 PF00005 ABC transporter IUJ48_12670 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_12685 PF07729 FCD domain IUJ48_12685 PF00392 Bacterial regulatory proteins, gntR family IUJ48_12690 PF00920 Dehydratase family IUJ48_12695 PF03737 Aldolase/RraA IUJ48_12700 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_12710 PF00701 Dihydrodipicolinate synthetase family IUJ48_12715 PF00392 Bacterial regulatory proteins, gntR family IUJ48_12715 PF07729 FCD domain IUJ48_12720 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_12725 PF13378 Enolase C-terminal domain-like IUJ48_12725 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IUJ48_12730 PF03466 LysR substrate binding domain IUJ48_12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12750 PF08241 Methyltransferase domain IUJ48_12760 PF03466 LysR substrate binding domain IUJ48_12760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12765 PF01042 Endoribonuclease L-PSP IUJ48_12785 PF03466 LysR substrate binding domain IUJ48_12785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12790 PF01470 Pyroglutamyl peptidase IUJ48_12795 PF00561 alpha/beta hydrolase fold IUJ48_12800 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_12805 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_12810 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_12815 PF00155 Aminotransferase class I and II IUJ48_12820 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_12830 PF00005 ABC transporter IUJ48_12840 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_12850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12850 PF03466 LysR substrate binding domain IUJ48_12880 PF00196 Bacterial regulatory proteins, luxR family IUJ48_12880 PF00072 Response regulator receiver domain IUJ48_12885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_12885 PF00989 PAS fold IUJ48_12885 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_12895 PF01047 MarR family IUJ48_12900 PF00654 Voltage gated chloride channel IUJ48_12905 PF03466 LysR substrate binding domain IUJ48_12905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12910 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ48_12920 PF03466 LysR substrate binding domain IUJ48_12920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_12925 PF00501 AMP-binding enzyme IUJ48_12925 PF13193 AMP-binding enzyme C-terminal domain IUJ48_12930 PF00083 Sugar (and other) transporter IUJ48_12935 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUJ48_12935 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUJ48_12945 PF00578 AhpC/TSA family IUJ48_12950 PF03060 Nitronate monooxygenase IUJ48_12955 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_12960 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_12965 PF00005 ABC transporter IUJ48_12970 PF00005 ABC transporter IUJ48_12975 PF01032 FecCD transport family IUJ48_12980 PF01032 FecCD transport family IUJ48_12990 PF07715 TonB-dependent Receptor Plug Domain IUJ48_12990 PF00593 TonB dependent receptor IUJ48_12990 PF07660 Secretin and TonB N terminus short domain IUJ48_12995 PF07690 Major Facilitator Superfamily IUJ48_13015 PF04183 IucA / IucC family IUJ48_13015 PF06276 Ferric iron reductase FhuF-like transporter IUJ48_13025 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IUJ48_13030 PF00005 ABC transporter IUJ48_13035 PF03649 Uncharacterised protein family (UPF0014) IUJ48_13040 PF09335 SNARE associated Golgi protein IUJ48_13045 PF03971 Monomeric isocitrate dehydrogenase IUJ48_13050 PF00486 Transcriptional regulatory protein, C terminal IUJ48_13050 PF00072 Response regulator receiver domain IUJ48_13055 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_13055 PF00585 C-terminal regulatory domain of Threonine dehydratase IUJ48_13060 PF08402 TOBE domain IUJ48_13060 PF00005 ABC transporter IUJ48_13065 PF00127 Copper binding proteins, plastocyanin/azurin family IUJ48_13070 PF01032 FecCD transport family IUJ48_13080 PF00072 Response regulator receiver domain IUJ48_13080 PF00486 Transcriptional regulatory protein, C terminal IUJ48_13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_13085 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_13090 PF00171 Aldehyde dehydrogenase family IUJ48_13095 PF00701 Dihydrodipicolinate synthetase family IUJ48_13100 PF08666 SAF domain IUJ48_13100 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IUJ48_13105 PF08450 SMP-30/Gluconolactonase/LRE-like region IUJ48_13110 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_13130 PF05425 Copper resistance protein D IUJ48_13140 PF00958 GMP synthase C terminal domain IUJ48_13140 PF00117 Glutamine amidotransferase class-I IUJ48_13145 PF00296 Luciferase-like monooxygenase IUJ48_13150 PF00005 ABC transporter IUJ48_13155 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13160 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13165 PF16868 NMT1-like family IUJ48_13175 PF00149 Calcineurin-like phosphoesterase IUJ48_13180 PF00857 Isochorismatase family IUJ48_13185 PF03466 LysR substrate binding domain IUJ48_13185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_13195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_13200 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13205 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13210 PF00005 ABC transporter IUJ48_13210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_13215 PF00005 ABC transporter IUJ48_13215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_13230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_13230 PF03466 LysR substrate binding domain IUJ48_13235 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_13240 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_13245 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13250 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13255 PF00005 ABC transporter IUJ48_13270 PF00593 TonB dependent receptor IUJ48_13270 PF07715 TonB-dependent Receptor Plug Domain IUJ48_13280 PF04264 YceI-like domain IUJ48_13285 PF01022 Bacterial regulatory protein, arsR family IUJ48_13295 PF01758 Sodium Bile acid symporter family IUJ48_13305 PF03358 NADPH-dependent FMN reductase IUJ48_13320 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_13330 PF12706 Beta-lactamase superfamily domain IUJ48_13335 PF06039 Malate:quinone oxidoreductase (Mqo) IUJ48_13345 PF00083 Sugar (and other) transporter IUJ48_13345 PF07690 Major Facilitator Superfamily IUJ48_13350 PF00850 Histone deacetylase domain IUJ48_13355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_13355 PF03466 LysR substrate binding domain IUJ48_13360 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_13360 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_13385 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_13390 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_13400 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_13400 PF14759 Reductase C-terminal IUJ48_13405 PF00355 Rieske [2Fe-2S] domain IUJ48_13410 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IUJ48_13410 PF00355 Rieske [2Fe-2S] domain IUJ48_13415 PF00866 Ring hydroxylating beta subunit IUJ48_13425 PF02423 Ornithine cyclodeaminase/mu-crystallin family IUJ48_13430 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_13445 PF01266 FAD dependent oxidoreductase IUJ48_13450 PF01042 Endoribonuclease L-PSP IUJ48_13455 PF07171 MlrC C-terminus IUJ48_13455 PF07364 Metallopeptidase family M81 IUJ48_13460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_13465 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13470 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_13470 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13475 PF00005 ABC transporter IUJ48_13475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_13480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_13480 PF00005 ABC transporter IUJ48_13485 PF07969 Amidohydrolase family IUJ48_13495 PF13520 Amino acid permease IUJ48_13505 PF10005 zinc-ribbon domain IUJ48_13505 PF15887 Putative zinc-binding metallo-peptidase IUJ48_13510 PF17676 LD-carboxypeptidase C-terminal domain IUJ48_13510 PF02016 LD-carboxypeptidase N-terminal domain IUJ48_13520 PF01594 AI-2E family transporter IUJ48_13540 PF03572 Peptidase family S41 IUJ48_13540 PF00595 PDZ domain IUJ48_13560 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_13565 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IUJ48_13570 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_13575 PF00005 ABC transporter IUJ48_13605 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_13605 PF07694 5TMR of 5TMR-LYT IUJ48_13615 PF09278 MerR, DNA binding IUJ48_13615 PF00376 MerR family regulatory protein IUJ48_13620 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_13655 PF11612 Type II secretion system (T2SS), protein J IUJ48_13655 PF07963 Prokaryotic N-terminal methylation motif IUJ48_13660 PF07963 Prokaryotic N-terminal methylation motif IUJ48_13660 PF02501 Type II secretion system (T2SS), protein I IUJ48_13705 PF12849 PBP superfamily domain IUJ48_13715 PF00482 Type II secretion system (T2SS), protein F IUJ48_13720 PF00437 Type II/IV secretion system protein IUJ48_13745 PF07963 Prokaryotic N-terminal methylation motif IUJ48_13745 PF08334 Type II secretion system (T2SS), protein G IUJ48_13755 PF01970 Tripartite tricarboxylate transporter TctA family IUJ48_13765 PF07690 Major Facilitator Superfamily IUJ48_13775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_13775 PF03466 LysR substrate binding domain IUJ48_13790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_13790 PF00672 HAMP domain IUJ48_13790 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_13800 PF03741 Integral membrane protein TerC family IUJ48_13800 PF03471 Transporter associated domain IUJ48_13805 PF13618 Gluconate 2-dehydrogenase subunit 3 IUJ48_13810 PF05199 GMC oxidoreductase IUJ48_13810 PF00732 GMC oxidoreductase IUJ48_13815 PF00034 Cytochrome c IUJ48_13825 PF02308 MgtC family IUJ48_13835 PF00593 TonB dependent receptor IUJ48_13835 PF07715 TonB-dependent Receptor Plug Domain IUJ48_13850 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_13850 PF00563 EAL domain IUJ48_13850 PF03707 Bacterial signalling protein N terminal repeat IUJ48_13850 PF13188 PAS domain IUJ48_13855 PF12805 FUSC-like inner membrane protein yccS IUJ48_13865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_13865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_13885 PF01965 DJ-1/PfpI family IUJ48_13935 PF02954 Bacterial regulatory protein, Fis family IUJ48_13935 PF00072 Response regulator receiver domain IUJ48_13935 PF00158 Sigma-54 interaction domain IUJ48_13940 PF02954 Bacterial regulatory protein, Fis family IUJ48_13940 PF00158 Sigma-54 interaction domain IUJ48_13945 PF04963 Sigma-54 factor, core binding domain IUJ48_13945 PF00309 Sigma-54 factor, Activator interacting domain (AID) IUJ48_13945 PF04552 Sigma-54, DNA binding domain IUJ48_13955 PF13188 PAS domain IUJ48_13955 PF00072 Response regulator receiver domain IUJ48_13955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_13955 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_13955 PF08448 PAS fold IUJ48_13965 PF05247 Flagellar transcriptional activator (FlhD) IUJ48_13970 PF07690 Major Facilitator Superfamily IUJ48_13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_13975 PF03466 LysR substrate binding domain IUJ48_13985 PF03707 Bacterial signalling protein N terminal repeat IUJ48_13985 PF00563 EAL domain IUJ48_13985 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_13990 PF00793 DAHP synthetase I family IUJ48_13995 PF01266 FAD dependent oxidoreductase IUJ48_14010 PF00486 Transcriptional regulatory protein, C terminal IUJ48_14010 PF00072 Response regulator receiver domain IUJ48_14015 PF03328 HpcH/HpaI aldolase/citrate lyase family IUJ48_14020 PF12848 ABC transporter IUJ48_14020 PF00005 ABC transporter IUJ48_14025 PF02666 Phosphatidylserine decarboxylase IUJ48_14030 PF01070 FMN-dependent dehydrogenase IUJ48_14035 PF00149 Calcineurin-like phosphoesterase IUJ48_14045 PF07690 Major Facilitator Superfamily IUJ48_14050 PF00072 Response regulator receiver domain IUJ48_14050 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_14055 PF03180 NLPA lipoprotein IUJ48_14065 PF00491 Arginase family IUJ48_14080 PF00107 Zinc-binding dehydrogenase IUJ48_14080 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_14085 PF04241 Protein of unknown function (DUF423) IUJ48_14090 PF00892 EamA-like transporter family IUJ48_14100 PF07995 Glucose / Sorbosone dehydrogenase IUJ48_14105 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_14105 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_14110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_14110 PF03466 LysR substrate binding domain IUJ48_14115 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_14120 PF07969 Amidohydrolase family IUJ48_14125 PF01177 Asp/Glu/Hydantoin racemase IUJ48_14135 PF00005 ABC transporter IUJ48_14140 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_14140 PF00005 ABC transporter IUJ48_14145 PF11862 Domain of unknown function (DUF3382) IUJ48_14145 PF02653 Branched-chain amino acid transport system / permease component IUJ48_14150 PF02653 Branched-chain amino acid transport system / permease component IUJ48_14155 PF13458 Periplasmic binding protein IUJ48_14165 PF02592 Putative vitamin uptake transporter IUJ48_14170 PF14748 Pyrroline-5-carboxylate reductase dimerisation IUJ48_14170 PF03807 NADP oxidoreductase coenzyme F420-dependent IUJ48_14175 PF13416 Bacterial extracellular solute-binding protein IUJ48_14180 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_14185 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_14190 PF17912 MalK OB fold domain IUJ48_14190 PF00005 ABC transporter IUJ48_14205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_14205 PF00672 HAMP domain IUJ48_14205 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_14210 PF00486 Transcriptional regulatory protein, C terminal IUJ48_14210 PF00072 Response regulator receiver domain IUJ48_14215 PF13458 Periplasmic binding protein IUJ48_14225 PF00544 Pectate lyase IUJ48_14255 PF00534 Glycosyl transferases group 1 IUJ48_14265 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IUJ48_14265 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IUJ48_14265 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IUJ48_14270 PF00210 Ferritin-like domain IUJ48_14275 PF03466 LysR substrate binding domain IUJ48_14275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_14280 PF17191 RecG wedge domain IUJ48_14280 PF00271 Helicase conserved C-terminal domain IUJ48_14280 PF00270 DEAD/DEAH box helicase IUJ48_14285 PF01042 Endoribonuclease L-PSP IUJ48_14290 PF03466 LysR substrate binding domain IUJ48_14290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_14305 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_14310 PF00970 Oxidoreductase FAD-binding domain IUJ48_14310 PF00175 Oxidoreductase NAD-binding domain IUJ48_14315 PF13416 Bacterial extracellular solute-binding protein IUJ48_14320 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_14325 PF08402 TOBE domain IUJ48_14325 PF00005 ABC transporter IUJ48_14330 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_14340 PF00472 RF-1 domain IUJ48_14345 PF02678 Pirin IUJ48_14345 PF05726 Pirin C-terminal cupin domain IUJ48_14350 PF02678 Pirin IUJ48_14350 PF17954 Quercetinase C-terminal cupin domain IUJ48_14355 PF03466 LysR substrate binding domain IUJ48_14355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_14360 PF00158 Sigma-54 interaction domain IUJ48_14360 PF00072 Response regulator receiver domain IUJ48_14360 PF02954 Bacterial regulatory protein, Fis family IUJ48_14365 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_14365 PF00989 PAS fold IUJ48_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_14370 PF00120 Glutamine synthetase, catalytic domain IUJ48_14370 PF03951 Glutamine synthetase, beta-Grasp domain IUJ48_14375 PF06969 HemN C-terminal domain IUJ48_14375 PF04055 Radical SAM superfamily IUJ48_14380 PF01725 Ham1 family IUJ48_14385 PF00563 EAL domain IUJ48_14385 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_14385 PF03707 Bacterial signalling protein N terminal repeat IUJ48_14395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_14395 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_14395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_14405 PF03725 3' exoribonuclease family, domain 2 IUJ48_14405 PF01138 3' exoribonuclease family, domain 1 IUJ48_14410 PF08340 Domain of unknown function (DUF1732) IUJ48_14410 PF03755 YicC-like family, N-terminal region IUJ48_14415 PF00324 Amino acid permease IUJ48_14420 PF01048 Phosphorylase superfamily IUJ48_14420 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus IUJ48_14430 PF00593 TonB dependent receptor IUJ48_14430 PF07715 TonB-dependent Receptor Plug Domain IUJ48_14435 PF00877 NlpC/P60 family IUJ48_14440 PF04829 Pre-toxin domain with VENN motif IUJ48_14440 PF13332 Hemagglutinin repeat IUJ48_14440 PF13018 Extended Signal Peptide of Type V secretion system IUJ48_14440 PF05860 haemagglutination activity domain IUJ48_14445 PF17287 POTRA domain IUJ48_14445 PF08479 POTRA domain, ShlB-type IUJ48_14445 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IUJ48_14460 PF00034 Cytochrome c IUJ48_14465 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_14470 PF00625 Guanylate kinase IUJ48_14475 PF01192 RNA polymerase Rpb6 IUJ48_14480 PF04607 Region found in RelA / SpoT proteins IUJ48_14480 PF02824 TGS domain IUJ48_14480 PF13291 ACT domain IUJ48_14485 PF01965 DJ-1/PfpI family IUJ48_14485 PF12833 Helix-turn-helix domain IUJ48_14490 PF00857 Isochorismatase family IUJ48_14495 PF00005 ABC transporter IUJ48_14500 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_14505 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_14535 PF05378 Hydantoinase/oxoprolinase N-terminal region IUJ48_14535 PF01968 Hydantoinase/oxoprolinase IUJ48_14545 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain IUJ48_14545 PF09297 NADH pyrophosphatase zinc ribbon domain IUJ48_14545 PF00293 NUDIX domain IUJ48_14560 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_14565 PF13609 Gram-negative porin IUJ48_14570 PF00005 ABC transporter IUJ48_14575 PF00005 ABC transporter IUJ48_14575 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_14585 PF02653 Branched-chain amino acid transport system / permease component IUJ48_14595 PF07286 Protein of unknown function (DUF1445) IUJ48_14600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_14600 PF03466 LysR substrate binding domain IUJ48_14605 PF01425 Amidase IUJ48_14615 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_14630 PF03466 LysR substrate binding domain IUJ48_14630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_14640 PF07055 Enoyl reductase FAD binding domain IUJ48_14640 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IUJ48_14640 PF12241 Trans-2-enoyl-CoA reductase catalytic region IUJ48_14650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_14650 PF03466 LysR substrate binding domain IUJ48_14655 PF08402 TOBE domain IUJ48_14655 PF00005 ABC transporter IUJ48_14660 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_14670 PF00005 ABC transporter IUJ48_14675 PF13472 GDSL-like Lipase/Acylhydrolase family IUJ48_14680 PF13145 PPIC-type PPIASE domain IUJ48_14685 PF07687 Peptidase dimerisation domain IUJ48_14685 PF01546 Peptidase family M20/M25/M40 IUJ48_14690 PF03009 Glycerophosphoryl diester phosphodiesterase family IUJ48_14695 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IUJ48_14700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ48_14700 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_14705 PF00462 Glutaredoxin IUJ48_14705 PF08534 Redoxin IUJ48_14715 PF00403 Heavy-metal-associated domain IUJ48_14720 PF00376 MerR family regulatory protein IUJ48_14720 PF09278 MerR, DNA binding IUJ48_14725 PF05958 tRNA (Uracil-5-)-methyltransferase IUJ48_14730 PF07690 Major Facilitator Superfamily IUJ48_14735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_14735 PF03466 LysR substrate binding domain IUJ48_14755 PF01476 LysM domain IUJ48_14755 PF01551 Peptidase family M23 IUJ48_14765 PF01975 Survival protein SurE IUJ48_14770 PF02660 Glycerol-3-phosphate acyltransferase IUJ48_14775 PF00814 Glycoprotease family IUJ48_14780 PF00860 Permease family IUJ48_14790 PF00296 Luciferase-like monooxygenase IUJ48_14795 PF00085 Thioredoxin IUJ48_14800 PF01205 Uncharacterized protein family UPF0029 IUJ48_14820 PF00005 ABC transporter IUJ48_14825 PF07690 Major Facilitator Superfamily IUJ48_14830 PF12848 ABC transporter IUJ48_14830 PF00005 ABC transporter IUJ48_14835 PF17676 LD-carboxypeptidase C-terminal domain IUJ48_14835 PF02016 LD-carboxypeptidase N-terminal domain IUJ48_14840 PF14437 MafB19-like deaminase IUJ48_14855 PF03334 Na+/H+ antiporter subunit IUJ48_14860 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IUJ48_14865 PF01899 Na+/H+ ion antiporter subunit IUJ48_14870 PF00361 Proton-conducting membrane transporter IUJ48_14875 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IUJ48_14880 PF00361 Proton-conducting membrane transporter IUJ48_14880 PF13244 Domain of unknown function (DUF4040) IUJ48_14880 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IUJ48_14880 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IUJ48_14885 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_14910 PF00149 Calcineurin-like phosphoesterase IUJ48_14910 PF12320 Type 5 capsule protein repressor C-terminal domain IUJ48_14915 PF01266 FAD dependent oxidoreductase IUJ48_14920 PF01037 Lrp/AsnC ligand binding domain IUJ48_14950 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_14950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_14950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_14955 PF02082 Transcriptional regulator IUJ48_14960 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_14960 PF13192 Thioredoxin domain IUJ48_14980 PF13609 Gram-negative porin IUJ48_14985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ48_15005 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_15010 PF00072 Response regulator receiver domain IUJ48_15010 PF00486 Transcriptional regulatory protein, C terminal IUJ48_15030 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_15035 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_15040 PF08402 TOBE domain IUJ48_15040 PF00005 ABC transporter IUJ48_15045 PF17912 MalK OB fold domain IUJ48_15045 PF00005 ABC transporter IUJ48_15050 PF00455 DeoR C terminal sensor domain IUJ48_15050 PF08220 DeoR-like helix-turn-helix domain IUJ48_15055 PF01266 FAD dependent oxidoreductase IUJ48_15055 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IUJ48_15060 PF00072 Response regulator receiver domain IUJ48_15070 PF16884 N-terminal domain of oxidoreductase IUJ48_15070 PF00107 Zinc-binding dehydrogenase IUJ48_15075 PF00440 Bacterial regulatory proteins, tetR family IUJ48_15085 PF00005 ABC transporter IUJ48_15095 PF02321 Outer membrane efflux protein IUJ48_15105 PF04073 Aminoacyl-tRNA editing domain IUJ48_15135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ48_15145 PF00472 RF-1 domain IUJ48_15165 PF00578 AhpC/TSA family IUJ48_15170 PF02515 CoA-transferase family III IUJ48_15180 PF03441 FAD binding domain of DNA photolyase IUJ48_15180 PF00875 DNA photolyase IUJ48_15185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_15185 PF08447 PAS fold IUJ48_15195 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IUJ48_15200 PF17042 Nucleotide-binding C-terminal domain IUJ48_15200 PF07005 Sugar-binding N-terminal domain IUJ48_15205 PF03466 LysR substrate binding domain IUJ48_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_15215 PF07690 Major Facilitator Superfamily IUJ48_15220 PF00255 Glutathione peroxidase IUJ48_15225 PF01037 Lrp/AsnC ligand binding domain IUJ48_15235 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_15235 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_15250 PF10437 Bacterial lipoate protein ligase C-terminus IUJ48_15250 PF03099 Biotin/lipoate A/B protein ligase family IUJ48_15260 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IUJ48_15260 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IUJ48_15265 PF08031 Berberine and berberine like IUJ48_15265 PF01565 FAD binding domain IUJ48_15270 PF00491 Arginase family IUJ48_15275 PF00005 ABC transporter IUJ48_15280 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_15285 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_15300 PF01026 TatD related DNase IUJ48_15305 PF12169 DNA polymerase III subunits gamma and tau domain III IUJ48_15310 PF02223 Thymidylate kinase IUJ48_15315 PF02618 YceG-like family IUJ48_15320 PF01571 Aminomethyltransferase folate-binding domain IUJ48_15335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ48_15335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ48_15340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_15340 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_15340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_15345 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_15345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_15345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_15350 PF03658 RnfH family Ubiquitin IUJ48_15355 PF03364 Polyketide cyclase / dehydrase and lipid transport IUJ48_15360 PF01668 SmpB protein IUJ48_15365 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_15370 PF01145 SPFH domain / Band 7 family IUJ48_15380 PF00117 Glutamine amidotransferase class-I IUJ48_15380 PF00958 GMP synthase C terminal domain IUJ48_15385 PF02805 Metal binding domain of Ada IUJ48_15385 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ48_15385 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ48_15385 PF12833 Helix-turn-helix domain IUJ48_15390 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ48_15390 PF00391 PEP-utilising enzyme, mobile domain IUJ48_15390 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IUJ48_15395 PF03618 Kinase/pyrophosphorylase IUJ48_15405 PF08032 RNA 2'-O ribose methyltransferase substrate binding IUJ48_15405 PF00588 SpoU rRNA Methylase family IUJ48_15410 PF01351 Ribonuclease HII IUJ48_15415 PF02684 Lipid-A-disaccharide synthetase IUJ48_15420 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_15420 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IUJ48_15425 PF07977 FabA-like domain IUJ48_15430 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_15430 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IUJ48_15435 PF03938 Outer membrane protein (OmpH-like) IUJ48_15440 PF01103 Surface antigen IUJ48_15440 PF07244 Surface antigen variable number repeat IUJ48_15445 PF17820 PDZ domain IUJ48_15445 PF02163 Peptidase family M50 IUJ48_15450 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IUJ48_15450 PF13288 DXP reductoisomerase C-terminal domain IUJ48_15450 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IUJ48_15460 PF01255 Putative undecaprenyl diphosphate synthase IUJ48_15465 PF01765 Ribosome recycling factor IUJ48_15470 PF00696 Amino acid kinase family IUJ48_15475 PF00889 Elongation factor TS IUJ48_15480 PF00318 Ribosomal protein S2 IUJ48_15485 PF00557 Metallopeptidase family M24 IUJ48_15490 PF01909 Nucleotidyltransferase domain IUJ48_15490 PF01966 HD domain IUJ48_15490 PF08335 GlnD PII-uridylyltransferase IUJ48_15500 PF02600 Disulfide bond formation protein DsbB IUJ48_15505 PF01863 Protein of unknown function DUF45 IUJ48_15510 PF00156 Phosphoribosyl transferase domain IUJ48_15525 PF08245 Mur ligase middle domain IUJ48_15525 PF02875 Mur ligase family, glutamate ligase domain IUJ48_15535 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_15540 PF02515 CoA-transferase family III IUJ48_15545 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_15545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_15545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_15550 PF01614 Bacterial transcriptional regulator IUJ48_15555 PF03646 FlaG protein IUJ48_15560 PF07195 Flagellar hook-associated protein 2 C-terminus IUJ48_15560 PF02465 Flagellar hook-associated protein 2 N-terminus IUJ48_15565 PF02561 Flagellar protein FliS IUJ48_15580 PF01312 FlhB HrpN YscU SpaS Family IUJ48_15590 PF02049 Flagellar hook-basal body complex protein FliE IUJ48_15595 PF01514 Secretory protein of YscJ/FliF family IUJ48_15595 PF08345 Flagellar M-ring protein C-terminal IUJ48_15600 PF01706 FliG C-terminal domain IUJ48_15600 PF14842 FliG N-terminal domain IUJ48_15600 PF14841 FliG middle domain IUJ48_15610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ48_15610 PF18269 T3SS EscN ATPase C-terminal domain IUJ48_15625 PF03748 Flagellar basal body-associated protein FliL IUJ48_15630 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ48_15630 PF02154 Flagellar motor switch protein FliM IUJ48_15635 PF16973 Flagellar motor switch protein FliN N-terminal IUJ48_15635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ48_15640 PF04347 Flagellar biosynthesis protein, FliO IUJ48_15645 PF00813 FliP family IUJ48_15650 PF01313 Bacterial export proteins, family 3 IUJ48_15655 PF01311 Bacterial export proteins, family 1 IUJ48_15660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_15660 PF08447 PAS fold IUJ48_15665 PF00672 HAMP domain IUJ48_15665 PF02203 Tar ligand binding domain homologue IUJ48_15665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_15675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_15675 PF02203 Tar ligand binding domain homologue IUJ48_15675 PF00672 HAMP domain IUJ48_15680 PF00672 HAMP domain IUJ48_15680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_15680 PF02203 Tar ligand binding domain homologue IUJ48_15685 PF00669 Bacterial flagellin N-terminal helical region IUJ48_15690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ48_15690 PF00460 Flagella basal body rod protein IUJ48_15695 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IUJ48_15695 PF10135 Rod binding protein IUJ48_15700 PF02119 Flagellar P-ring protein IUJ48_15705 PF02107 Flagellar L-ring protein IUJ48_15710 PF00460 Flagella basal body rod protein IUJ48_15710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ48_15715 PF00460 Flagella basal body rod protein IUJ48_15715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ48_15720 PF07559 Flagellar basal body protein FlaE IUJ48_15720 PF00460 Flagella basal body rod protein IUJ48_15720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ48_15725 PF03963 Flagellar hook capping protein - N-terminal region IUJ48_15725 PF13860 FlgD Ig-like domain IUJ48_15725 PF13861 FlgD Tudor-like domain IUJ48_15730 PF00460 Flagella basal body rod protein IUJ48_15730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ48_15735 PF00460 Flagella basal body rod protein IUJ48_15745 PF04316 Anti-sigma-28 factor, FlgM IUJ48_15755 PF00448 SRP54-type protein, GTPase domain IUJ48_15760 PF00771 FHIPEP family IUJ48_15765 PF01312 FlhB HrpN YscU SpaS Family IUJ48_15770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_15770 PF00672 HAMP domain IUJ48_15775 PF04344 Chemotaxis phosphatase, CheZ IUJ48_15780 PF00072 Response regulator receiver domain IUJ48_15785 PF00072 Response regulator receiver domain IUJ48_15785 PF01339 CheB methylesterase IUJ48_15790 PF01739 CheR methyltransferase, SAM binding domain IUJ48_15790 PF03705 CheR methyltransferase, all-alpha domain IUJ48_15795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_15795 PF02203 Tar ligand binding domain homologue IUJ48_15795 PF00672 HAMP domain IUJ48_15800 PF01584 CheW-like domain IUJ48_15805 PF02895 Signal transducing histidine kinase, homodimeric domain IUJ48_15805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_15805 PF01584 CheW-like domain IUJ48_15805 PF01627 Hpt domain IUJ48_15805 PF09078 CheY binding IUJ48_15810 PF00072 Response regulator receiver domain IUJ48_15815 PF00691 OmpA family IUJ48_15815 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ48_15820 PF01618 MotA/TolQ/ExbB proton channel family IUJ48_15825 PF05280 Flagellar transcriptional activator (FlhC) IUJ48_15830 PF05247 Flagellar transcriptional activator (FlhD) IUJ48_15835 PF04542 Sigma-70 region 2 IUJ48_15835 PF04539 Sigma-70 region 3 IUJ48_15835 PF04545 Sigma-70, region 4 IUJ48_15840 PF13847 Methyltransferase domain IUJ48_15840 PF10119 Predicted methyltransferase regulatory domain IUJ48_15845 PF00669 Bacterial flagellin N-terminal helical region IUJ48_15845 PF08884 Flagellin D3 domain IUJ48_15845 PF00700 Bacterial flagellin C-terminal helical region IUJ48_15860 PF03466 LysR substrate binding domain IUJ48_15860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_15870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ48_15870 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_15875 PF00364 Biotin-requiring enzyme IUJ48_15875 PF02817 e3 binding domain IUJ48_15875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ48_15880 PF17831 Pyruvate dehydrogenase E1 component middle domain IUJ48_15880 PF00456 Transketolase, thiamine diphosphate binding domain IUJ48_15885 PF00989 PAS fold IUJ48_15885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_15885 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_15890 PF00196 Bacterial regulatory proteins, luxR family IUJ48_15890 PF00072 Response regulator receiver domain IUJ48_15895 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IUJ48_15895 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IUJ48_15900 PF01432 Peptidase family M3 IUJ48_15910 PF02630 SCO1/SenC IUJ48_15915 PF04226 Transglycosylase associated protein IUJ48_15920 PF02321 Outer membrane efflux protein IUJ48_15925 PF00873 AcrB/AcrD/AcrF family IUJ48_15930 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_15930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_15935 PF03466 LysR substrate binding domain IUJ48_15940 PF01479 S4 domain IUJ48_15940 PF00849 RNA pseudouridylate synthase IUJ48_15945 PF04345 Chorismate lyase IUJ48_15950 PF07690 Major Facilitator Superfamily IUJ48_15965 PF07152 YaeQ protein IUJ48_15970 PF00005 ABC transporter IUJ48_15970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_15975 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_15975 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_15980 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_15985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_15995 PF03466 LysR substrate binding domain IUJ48_15995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16000 PF04185 Phosphoesterase family IUJ48_16000 PF05506 Domain of unknown function (DUF756) IUJ48_16020 PF07963 Prokaryotic N-terminal methylation motif IUJ48_16020 PF08334 Type II secretion system (T2SS), protein G IUJ48_16025 PF12019 Type II transport protein GspH IUJ48_16025 PF07963 Prokaryotic N-terminal methylation motif IUJ48_16030 PF07963 Prokaryotic N-terminal methylation motif IUJ48_16030 PF02501 Type II secretion system (T2SS), protein I IUJ48_16035 PF11612 Type II secretion system (T2SS), protein J IUJ48_16035 PF07963 Prokaryotic N-terminal methylation motif IUJ48_16040 PF03934 Type II secretion system (T2SS), protein K IUJ48_16055 PF01203 Type II secretion system (T2SS), protein N IUJ48_16070 PF00437 Type II/IV secretion system protein IUJ48_16075 PF03958 Bacterial type II/III secretion system short domain IUJ48_16075 PF00263 Bacterial type II and III secretion system protein IUJ48_16080 PF00482 Type II secretion system (T2SS), protein F IUJ48_16085 PF00543 Nitrogen regulatory protein P-II IUJ48_16090 PF02540 NAD synthase IUJ48_16090 PF00795 Carbon-nitrogen hydrolase IUJ48_16095 PF00924 Mechanosensitive ion channel IUJ48_16100 PF14698 Argininosuccinate lyase C-terminal IUJ48_16100 PF00206 Lyase IUJ48_16110 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_16110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ48_16115 PF00364 Biotin-requiring enzyme IUJ48_16115 PF02817 e3 binding domain IUJ48_16115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ48_16120 PF02779 Transketolase, pyrimidine binding domain IUJ48_16120 PF02780 Transketolase, C-terminal domain IUJ48_16125 PF00676 Dehydrogenase E1 component IUJ48_16125 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal IUJ48_16130 PF07715 TonB-dependent Receptor Plug Domain IUJ48_16130 PF00593 TonB dependent receptor IUJ48_16155 PF13411 MerR HTH family regulatory protein IUJ48_16160 PF00403 Heavy-metal-associated domain IUJ48_16165 PF13302 Acetyltransferase (GNAT) domain IUJ48_16170 PF03466 LysR substrate binding domain IUJ48_16170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16175 PF07690 Major Facilitator Superfamily IUJ48_16185 PF00677 Lumazine binding domain IUJ48_16190 PF00171 Aldehyde dehydrogenase family IUJ48_16195 PF00392 Bacterial regulatory proteins, gntR family IUJ48_16195 PF07729 FCD domain IUJ48_16220 PF00149 Calcineurin-like phosphoesterase IUJ48_16245 PF01914 MarC family integral membrane protein IUJ48_16255 PF01425 Amidase IUJ48_16260 PF07690 Major Facilitator Superfamily IUJ48_16265 PF00356 Bacterial regulatory proteins, lacI family IUJ48_16270 PF08241 Methyltransferase domain IUJ48_16280 PF08361 MAATS-type transcriptional repressor, C-terminal region IUJ48_16280 PF00440 Bacterial regulatory proteins, tetR family IUJ48_16285 PF07690 Major Facilitator Superfamily IUJ48_16290 PF07690 Major Facilitator Superfamily IUJ48_16295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16295 PF03466 LysR substrate binding domain IUJ48_16305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16305 PF03466 LysR substrate binding domain IUJ48_16310 PF01266 FAD dependent oxidoreductase IUJ48_16310 PF16350 FAD dependent oxidoreductase central domain IUJ48_16310 PF01571 Aminomethyltransferase folate-binding domain IUJ48_16310 PF08669 Glycine cleavage T-protein C-terminal barrel domain IUJ48_16315 PF03466 LysR substrate binding domain IUJ48_16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16320 PF00664 ABC transporter transmembrane region IUJ48_16320 PF00005 ABC transporter IUJ48_16325 PF01804 Penicillin amidase IUJ48_16330 PF03466 LysR substrate binding domain IUJ48_16330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16355 PF13193 AMP-binding enzyme C-terminal domain IUJ48_16355 PF00501 AMP-binding enzyme IUJ48_16370 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IUJ48_16370 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_16375 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_16380 PF00664 ABC transporter transmembrane region IUJ48_16380 PF00005 ABC transporter IUJ48_16385 PF01810 LysE type translocator IUJ48_16390 PF01037 Lrp/AsnC ligand binding domain IUJ48_16395 PF01965 DJ-1/PfpI family IUJ48_16400 PF01965 DJ-1/PfpI family IUJ48_16415 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_16425 PF00501 AMP-binding enzyme IUJ48_16425 PF13193 AMP-binding enzyme C-terminal domain IUJ48_16430 PF00392 Bacterial regulatory proteins, gntR family IUJ48_16430 PF07702 UTRA domain IUJ48_16440 PF01323 DSBA-like thioredoxin domain IUJ48_16445 PF07690 Major Facilitator Superfamily IUJ48_16445 PF00083 Sugar (and other) transporter IUJ48_16450 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ48_16455 PF03466 LysR substrate binding domain IUJ48_16455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16460 PF07690 Major Facilitator Superfamily IUJ48_16465 PF02909 Tetracyclin repressor-like, C-terminal domain IUJ48_16465 PF00440 Bacterial regulatory proteins, tetR family IUJ48_16470 PF00293 NUDIX domain IUJ48_16470 PF09297 NADH pyrophosphatase zinc ribbon domain IUJ48_16475 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IUJ48_16485 PF00593 TonB dependent receptor IUJ48_16485 PF07660 Secretin and TonB N terminus short domain IUJ48_16485 PF07715 TonB-dependent Receptor Plug Domain IUJ48_16495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16495 PF03466 LysR substrate binding domain IUJ48_16505 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family IUJ48_16510 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_16515 PF02515 CoA-transferase family III IUJ48_16520 PF03466 LysR substrate binding domain IUJ48_16520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16525 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_16540 PF07715 TonB-dependent Receptor Plug Domain IUJ48_16540 PF00593 TonB dependent receptor IUJ48_16545 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_16550 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_16550 PF00563 EAL domain IUJ48_16550 PF13426 PAS domain IUJ48_16555 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_16560 PF00920 Dehydratase family IUJ48_16570 PF03466 LysR substrate binding domain IUJ48_16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_16575 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_16575 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_16580 PF05853 beta-keto acid cleavage enzyme IUJ48_16595 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ48_16595 PF01568 Molydopterin dinucleotide binding domain IUJ48_16595 PF00384 Molybdopterin oxidoreductase IUJ48_16600 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) IUJ48_16605 PF03264 NapC/NirT cytochrome c family, N-terminal region IUJ48_16610 PF00005 ABC transporter IUJ48_16615 PF03379 CcmB protein IUJ48_16620 PF01578 Cytochrome C assembly protein IUJ48_16630 PF03100 CcmE IUJ48_16635 PF01578 Cytochrome C assembly protein IUJ48_16635 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IUJ48_16640 PF08534 Redoxin IUJ48_16645 PF03918 Cytochrome C biogenesis protein IUJ48_16655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ48_16655 PF00384 Molybdopterin oxidoreductase IUJ48_16655 PF01568 Molydopterin dinucleotide binding domain IUJ48_16660 PF03916 Polysulphide reductase, NrfD IUJ48_16665 PF13247 4Fe-4S dicluster domain IUJ48_16670 PF02613 Nitrate reductase delta subunit IUJ48_16680 PF03264 NapC/NirT cytochrome c family, N-terminal region IUJ48_16690 PF00005 ABC transporter IUJ48_16695 PF03379 CcmB protein IUJ48_16700 PF01578 Cytochrome C assembly protein IUJ48_16710 PF03100 CcmE IUJ48_16715 PF01578 Cytochrome C assembly protein IUJ48_16715 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IUJ48_16720 PF08534 Redoxin IUJ48_16725 PF03918 Cytochrome C biogenesis protein IUJ48_16740 PF05726 Pirin C-terminal cupin domain IUJ48_16740 PF02678 Pirin IUJ48_16745 PF00563 EAL domain IUJ48_16745 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_16745 PF00498 FHA domain IUJ48_16755 PF00072 Response regulator receiver domain IUJ48_16755 PF00196 Bacterial regulatory proteins, luxR family IUJ48_16760 PF00989 PAS fold IUJ48_16760 PF01627 Hpt domain IUJ48_16760 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_16760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_16760 PF00072 Response regulator receiver domain IUJ48_16760 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_16765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_16765 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_16765 PF01627 Hpt domain IUJ48_16765 PF00072 Response regulator receiver domain IUJ48_16765 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_16775 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ48_16775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ48_16780 PF00577 Outer membrane usher protein IUJ48_16780 PF13954 PapC N-terminal domain IUJ48_16780 PF13953 PapC C-terminal domain IUJ48_16805 PF04542 Sigma-70 region 2 IUJ48_16805 PF08281 Sigma-70, region 4 IUJ48_16810 PF16220 Domain of unknown function (DUF4880) IUJ48_16810 PF04773 FecR protein IUJ48_16815 PF00593 TonB dependent receptor IUJ48_16815 PF07660 Secretin and TonB N terminus short domain IUJ48_16815 PF07715 TonB-dependent Receptor Plug Domain IUJ48_16825 PF04575 Protein of unknown function (DUF560) IUJ48_16830 PF01070 FMN-dependent dehydrogenase IUJ48_16840 PF03737 Aldolase/RraA IUJ48_16845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_16845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_16845 PF01842 ACT domain IUJ48_16850 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_16855 PF00106 short chain dehydrogenase IUJ48_16865 PF01381 Helix-turn-helix IUJ48_16865 PF00145 C-5 cytosine-specific DNA methylase IUJ48_16870 PF12833 Helix-turn-helix domain IUJ48_16890 PF03275 UDP-galactopyranose mutase IUJ48_16895 PF01613 Flavin reductase like domain IUJ48_16900 PF17885 Styrene monooxygenase A putative substrate binding domain IUJ48_16915 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain IUJ48_16915 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain IUJ48_16920 PF00501 AMP-binding enzyme IUJ48_16920 PF13193 AMP-binding enzyme C-terminal domain IUJ48_16935 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_16940 PF01554 MatE IUJ48_16945 PF01546 Peptidase family M20/M25/M40 IUJ48_16945 PF07687 Peptidase dimerisation domain IUJ48_16955 PF00892 EamA-like transporter family IUJ48_16960 PF00892 EamA-like transporter family IUJ48_16970 PF00155 Aminotransferase class I and II IUJ48_16970 PF00392 Bacterial regulatory proteins, gntR family IUJ48_16975 PF01810 LysE type translocator IUJ48_16985 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_16985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ48_16990 PF17831 Pyruvate dehydrogenase E1 component middle domain IUJ48_16990 PF00456 Transketolase, thiamine diphosphate binding domain IUJ48_16995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_17000 PF07732 Multicopper oxidase IUJ48_17000 PF00394 Multicopper oxidase IUJ48_17015 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ48_17025 PF01177 Asp/Glu/Hydantoin racemase IUJ48_17035 PF13193 AMP-binding enzyme C-terminal domain IUJ48_17035 PF00501 AMP-binding enzyme IUJ48_17040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_17040 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_17040 PF12806 Acetyl-CoA dehydrogenase C-terminal like IUJ48_17040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_17050 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_17055 PF00005 ABC transporter IUJ48_17060 PF07690 Major Facilitator Superfamily IUJ48_17065 PF01638 HxlR-like helix-turn-helix IUJ48_17075 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_17080 PF03466 LysR substrate binding domain IUJ48_17080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_17085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_17085 PF03466 LysR substrate binding domain IUJ48_17105 PF01619 Proline dehydrogenase IUJ48_17110 PF00892 EamA-like transporter family IUJ48_17115 PF01266 FAD dependent oxidoreductase IUJ48_17120 PF02082 Transcriptional regulator IUJ48_17125 PF00970 Oxidoreductase FAD-binding domain IUJ48_17125 PF00042 Globin IUJ48_17125 PF00175 Oxidoreductase NAD-binding domain IUJ48_17145 PF00550 Phosphopantetheine attachment site IUJ48_17150 PF00550 Phosphopantetheine attachment site IUJ48_17160 PF07977 FabA-like domain IUJ48_17190 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ48_17190 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ48_17205 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ48_17205 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ48_17210 PF09424 Yqey-like protein IUJ48_17215 PF11799 impB/mucB/samB family C-terminal domain IUJ48_17215 PF11798 IMS family HHH motif IUJ48_17215 PF00817 impB/mucB/samB family IUJ48_17230 PF00326 Prolyl oligopeptidase family IUJ48_17235 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_17245 PF14883 Hypothetical glycosyl hydrolase family 13 IUJ48_17245 PF01522 Polysaccharide deacetylase IUJ48_17250 PF00535 Glycosyl transferase family 2 IUJ48_17260 PF07690 Major Facilitator Superfamily IUJ48_17265 PF02311 AraC-like ligand binding domain IUJ48_17265 PF12833 Helix-turn-helix domain IUJ48_17270 PF00912 Transglycosylase IUJ48_17270 PF17092 Penicillin-binding protein OB-like domain IUJ48_17270 PF00905 Penicillin binding protein transpeptidase domain IUJ48_17275 PF00149 Calcineurin-like phosphoesterase IUJ48_17290 PF00248 Aldo/keto reductase family IUJ48_17295 PF00005 ABC transporter IUJ48_17295 PF00664 ABC transporter transmembrane region IUJ48_17305 PF13593 SBF-like CPA transporter family (DUF4137) IUJ48_17310 PF03466 LysR substrate binding domain IUJ48_17310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_17325 PF00005 ABC transporter IUJ48_17335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ48_17335 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IUJ48_17335 PF02142 MGS-like domain IUJ48_17350 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_17355 PF03466 LysR substrate binding domain IUJ48_17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_17385 PF01037 Lrp/AsnC ligand binding domain IUJ48_17410 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_17420 PF00583 Acetyltransferase (GNAT) family IUJ48_17425 PF02567 Phenazine biosynthesis-like protein IUJ48_17445 PF00293 NUDIX domain IUJ48_17450 PF07690 Major Facilitator Superfamily IUJ48_17475 PF00216 Bacterial DNA-binding protein IUJ48_17480 PF03147 Ferredoxin-fold anticodon binding domain IUJ48_17480 PF03483 B3/4 domain IUJ48_17480 PF03484 tRNA synthetase B5 domain IUJ48_17480 PF01588 Putative tRNA binding domain IUJ48_17480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IUJ48_17485 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IUJ48_17485 PF01409 tRNA synthetases class II core domain (F) IUJ48_17490 PF00453 Ribosomal protein L20 IUJ48_17495 PF01632 Ribosomal protein L35 IUJ48_17500 PF13335 Magnesium chelatase, subunit ChlI C-terminal IUJ48_17500 PF01078 Magnesium chelatase, subunit ChlI IUJ48_17505 PF04380 Membrane fusogenic activity IUJ48_17515 PF00543 Nitrogen regulatory protein P-II IUJ48_17520 PF00909 Ammonium Transporter Family IUJ48_17525 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ48_17525 PF00391 PEP-utilising enzyme, mobile domain IUJ48_17525 PF05524 PEP-utilising enzyme, N-terminal IUJ48_17530 PF00381 PTS HPr component phosphorylation site IUJ48_17540 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IUJ48_17540 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IUJ48_17545 PF05198 Translation initiation factor IF-3, N-terminal domain IUJ48_17545 PF00707 Translation initiation factor IF-3, C-terminal domain IUJ48_17550 PF02824 TGS domain IUJ48_17550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUJ48_17550 PF03129 Anticodon binding domain IUJ48_17550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ48_17555 PF04321 RmlD substrate binding domain IUJ48_17560 PF00072 Response regulator receiver domain IUJ48_17560 PF00196 Bacterial regulatory proteins, luxR family IUJ48_17565 PF04055 Radical SAM superfamily IUJ48_17565 PF06969 HemN C-terminal domain IUJ48_17580 PF07729 FCD domain IUJ48_17580 PF00392 Bacterial regulatory proteins, gntR family IUJ48_17585 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ48_17585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_17585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_17590 PF07687 Peptidase dimerisation domain IUJ48_17590 PF01546 Peptidase family M20/M25/M40 IUJ48_17595 PF00171 Aldehyde dehydrogenase family IUJ48_17600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_17605 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_17610 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_17610 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_17615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_17615 PF00005 ABC transporter IUJ48_17620 PF07883 Cupin domain IUJ48_17625 PF00850 Histone deacetylase domain IUJ48_17630 PF00892 EamA-like transporter family IUJ48_17635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ48_17635 PF00356 Bacterial regulatory proteins, lacI family IUJ48_17640 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IUJ48_17645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_17650 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_17655 PF00920 Dehydratase family IUJ48_17670 PF01966 HD domain IUJ48_17690 PF00561 alpha/beta hydrolase fold IUJ48_17705 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IUJ48_17710 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_17715 PF01416 tRNA pseudouridine synthase IUJ48_17725 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ48_17725 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUJ48_17730 PF00180 Isocitrate/isopropylmalate dehydrogenase IUJ48_17735 PF00694 Aconitase C-terminal domain IUJ48_17740 PF00330 Aconitase family (aconitate hydratase) IUJ48_17745 PF02321 Outer membrane efflux protein IUJ48_17755 PF00664 ABC transporter transmembrane region IUJ48_17755 PF00005 ABC transporter IUJ48_17755 PF03412 Peptidase C39 family IUJ48_17760 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_17760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_17765 PF00196 Bacterial regulatory proteins, luxR family IUJ48_17765 PF00072 Response regulator receiver domain IUJ48_17785 PF01435 Peptidase family M48 IUJ48_17790 PF01264 Chorismate synthase IUJ48_17795 PF00563 EAL domain IUJ48_17795 PF03707 Bacterial signalling protein N terminal repeat IUJ48_17795 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_17805 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_17805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_17810 PF00486 Transcriptional regulatory protein, C terminal IUJ48_17810 PF00072 Response regulator receiver domain IUJ48_17815 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IUJ48_17825 PF03631 Virulence factor BrkB IUJ48_17835 PF01207 Dihydrouridine synthase (Dus) IUJ48_17840 PF01636 Phosphotransferase enzyme family IUJ48_17860 PF00437 Type II/IV secretion system protein IUJ48_17865 PF00263 Bacterial type II and III secretion system protein IUJ48_17865 PF13629 Pilus formation protein N terminal region IUJ48_17865 PF04972 BON domain IUJ48_17895 PF01757 Acyltransferase family IUJ48_17905 PF00534 Glycosyl transferases group 1 IUJ48_17905 PF13439 Glycosyltransferase Family 4 IUJ48_17915 PF00140 Sigma-70 factor, region 1.2 IUJ48_17915 PF04542 Sigma-70 region 2 IUJ48_17915 PF04539 Sigma-70 region 3 IUJ48_17915 PF04545 Sigma-70, region 4 IUJ48_17915 PF03979 Sigma-70 factor, region 1.1 IUJ48_17915 PF04546 Sigma-70, non-essential region IUJ48_17920 PF10410 DnaB-helicase binding domain of primase IUJ48_17920 PF08278 DNA primase DnaG DnaB-binding IUJ48_17920 PF08275 DNA primase catalytic core, N-terminal domain IUJ48_17920 PF01807 CHC2 zinc finger IUJ48_17925 PF01165 Ribosomal protein S21 IUJ48_17930 PF00156 Phosphoribosyl transferase domain IUJ48_17935 PF00709 Adenylosuccinate synthetase IUJ48_17940 PF13393 Histidyl-tRNA synthetase IUJ48_17945 PF01145 SPFH domain / Band 7 family IUJ48_17950 PF01145 SPFH domain / Band 7 family IUJ48_17950 PF12221 Bacterial membrane protein N terminal IUJ48_17955 PF16360 GTP-binding GTPase Middle Region IUJ48_17955 PF01926 50S ribosome-binding GTPase IUJ48_17955 PF13167 GTP-binding GTPase N-terminal IUJ48_17960 PF17209 Hfq protein IUJ48_17965 PF00155 Aminotransferase class I and II IUJ48_17970 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IUJ48_17970 PF01926 50S ribosome-binding GTPase IUJ48_17975 PF13360 PQQ-like domain IUJ48_17980 PF09976 Tetratricopeptide repeat-like domain IUJ48_17985 PF13393 Histidyl-tRNA synthetase IUJ48_17985 PF03129 Anticodon binding domain IUJ48_17990 PF04551 GcpE protein IUJ48_18005 PF00334 Nucleoside diphosphate kinase IUJ48_18010 PF08264 Anticodon-binding domain of tRNA IUJ48_18010 PF00133 tRNA synthetases class I (I, L, M and V) IUJ48_18010 PF10458 Valyl tRNA synthetase tRNA binding arm IUJ48_18015 PF01266 FAD dependent oxidoreductase IUJ48_18020 PF00005 ABC transporter IUJ48_18025 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_18030 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_18040 PF01746 tRNA (Guanine-1)-methyltransferase IUJ48_18045 PF01782 RimM N-terminal domain IUJ48_18050 PF00886 Ribosomal protein S16 IUJ48_18060 PF01206 Sulfurtransferase TusA IUJ48_18065 PF02272 DHHA1 domain IUJ48_18065 PF01411 tRNA synthetases class II (A) IUJ48_18065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUJ48_18075 PF13416 Bacterial extracellular solute-binding protein IUJ48_18080 PF01266 FAD dependent oxidoreductase IUJ48_18085 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_18085 PF00970 Oxidoreductase FAD-binding domain IUJ48_18085 PF00175 Oxidoreductase NAD-binding domain IUJ48_18090 PF02261 Aspartate decarboxylase IUJ48_18095 PF00893 Small Multidrug Resistance protein IUJ48_18100 PF03473 MOSC domain IUJ48_18100 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_18100 PF03476 MOSC N-terminal beta barrel domain IUJ48_18105 PF05721 Phytanoyl-CoA dioxygenase (PhyH) IUJ48_18110 PF06339 Ectoine synthase IUJ48_18115 PF00202 Aminotransferase class-III IUJ48_18120 PF00583 Acetyltransferase (GNAT) family IUJ48_18125 PF12802 MarR family IUJ48_18135 PF00202 Aminotransferase class-III IUJ48_18140 PF04235 Protein of unknown function (DUF418) IUJ48_18145 PF08362 YcdC-like protein, C-terminal region IUJ48_18145 PF00440 Bacterial regulatory proteins, tetR family IUJ48_18150 PF00521 DNA gyrase/topoisomerase IV, subunit A IUJ48_18160 PF00204 DNA gyrase B IUJ48_18160 PF00986 DNA gyrase B subunit, carboxyl terminus IUJ48_18160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_18160 PF01751 Toprim domain IUJ48_18165 PF00085 Thioredoxin IUJ48_18170 PF07497 Rho termination factor, RNA-binding domain IUJ48_18170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ48_18170 PF07498 Rho termination factor, N-terminal domain IUJ48_18180 PF08335 GlnD PII-uridylyltransferase IUJ48_18180 PF03710 Glutamate-ammonia ligase adenylyltransferase IUJ48_18185 PF02677 Epoxyqueuosine reductase QueH IUJ48_18190 PF14525 AraC-binding-like domain IUJ48_18200 PF02975 Methylamine dehydrogenase, L chain IUJ48_18205 PF00578 AhpC/TSA family IUJ48_18215 PF06433 Methylamine dehydrogenase heavy chain (MADH) IUJ48_18225 PF00171 Aldehyde dehydrogenase family IUJ48_18230 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_18230 PF00107 Zinc-binding dehydrogenase IUJ48_18245 PF01047 MarR family IUJ48_18250 PF02321 Outer membrane efflux protein IUJ48_18255 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_18255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_18260 PF07690 Major Facilitator Superfamily IUJ48_18270 PF00180 Isocitrate/isopropylmalate dehydrogenase IUJ48_18275 PF05872 Bacterial protein of unknown function (DUF853) IUJ48_18280 PF01709 Transcriptional regulator IUJ48_18285 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IUJ48_18285 PF02843 Phosphoribosylglycinamide synthetase, C domain IUJ48_18285 PF02844 Phosphoribosylglycinamide synthetase, N domain IUJ48_18290 PF01218 Coproporphyrinogen III oxidase IUJ48_18295 PF01467 Cytidylyltransferase-like IUJ48_18305 PF02590 Predicted SPOUT methyltransferase IUJ48_18310 PF02545 Maf-like protein IUJ48_18315 PF00375 Sodium:dicarboxylate symporter family IUJ48_18320 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_18320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_18325 PF00158 Sigma-54 interaction domain IUJ48_18325 PF00072 Response regulator receiver domain IUJ48_18325 PF02954 Bacterial regulatory protein, Fis family IUJ48_18355 PF00575 S1 RNA binding domain IUJ48_18355 PF10150 Ribonuclease E/G family IUJ48_18360 PF11254 Protein of unknown function (DUF3053) IUJ48_18365 PF01590 GAF domain IUJ48_18365 PF00360 Phytochrome region IUJ48_18365 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_18365 PF00563 EAL domain IUJ48_18375 PF00999 Sodium/hydrogen exchanger family IUJ48_18375 PF02254 TrkA-N domain IUJ48_18380 PF00005 ABC transporter IUJ48_18380 PF00664 ABC transporter transmembrane region IUJ48_18395 PF03692 Putative zinc- or iron-chelating domain IUJ48_18405 PF01522 Polysaccharide deacetylase IUJ48_18410 PF13439 Glycosyltransferase Family 4 IUJ48_18410 PF00534 Glycosyl transferases group 1 IUJ48_18415 PF00535 Glycosyl transferase family 2 IUJ48_18420 PF01522 Polysaccharide deacetylase IUJ48_18425 PF00534 Glycosyl transferases group 1 IUJ48_18430 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IUJ48_18430 PF01336 OB-fold nucleic acid binding domain IUJ48_18430 PF02811 PHP domain IUJ48_18430 PF07733 Bacterial DNA polymerase III alpha NTPase domain IUJ48_18430 PF14579 Helix-hairpin-helix motif IUJ48_18440 PF00005 ABC transporter IUJ48_18445 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_18450 PF00270 DEAD/DEAH box helicase IUJ48_18450 PF04408 Helicase associated domain (HA2) IUJ48_18450 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IUJ48_18450 PF11898 Domain of unknown function (DUF3418) IUJ48_18450 PF00271 Helicase conserved C-terminal domain IUJ48_18455 PF00583 Acetyltransferase (GNAT) family IUJ48_18455 PF00696 Amino acid kinase family IUJ48_18460 PF04362 Bacterial Fe(2+) trafficking IUJ48_18465 PF05506 Domain of unknown function (DUF756) IUJ48_18465 PF04185 Phosphoesterase family IUJ48_18470 PF01895 PhoU domain IUJ48_18475 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IUJ48_18480 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_18480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_18480 PF18158 Adaptive response protein AidB N-terminal domain IUJ48_18485 PF01425 Amidase IUJ48_18490 PF02646 RmuC family IUJ48_18500 PF02245 Methylpurine-DNA glycosylase (MPG) IUJ48_18510 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_18515 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_18520 PF00005 ABC transporter IUJ48_18520 PF08402 TOBE domain IUJ48_18525 PF13416 Bacterial extracellular solute-binding protein IUJ48_18545 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_18555 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IUJ48_18555 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IUJ48_18565 PF00202 Aminotransferase class-III IUJ48_18570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ48_18570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ48_18575 PF12697 Alpha/beta hydrolase family IUJ48_18595 PF04909 Amidohydrolase IUJ48_18600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_18600 PF03466 LysR substrate binding domain IUJ48_18605 PF00764 Arginosuccinate synthase IUJ48_18610 PF02705 K+ potassium transporter IUJ48_18615 PF08521 Two-component sensor kinase N-terminal IUJ48_18615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_18615 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_18620 PF00072 Response regulator receiver domain IUJ48_18620 PF00486 Transcriptional regulatory protein, C terminal IUJ48_18625 PF02472 Biopolymer transport protein ExbD/TolR IUJ48_18630 PF01618 MotA/TolQ/ExbB proton channel family IUJ48_18645 PF00216 Bacterial DNA-binding protein IUJ48_18650 PF18331 PKHD-type hydroxylase C-terminal domain IUJ48_18650 PF13640 2OG-Fe(II) oxygenase superfamily IUJ48_18655 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_18660 PF00588 SpoU rRNA Methylase family IUJ48_18660 PF08032 RNA 2'-O ribose methyltransferase substrate binding IUJ48_18665 PF00773 RNB domain IUJ48_18665 PF08206 Ribonuclease B OB domain IUJ48_18665 PF08461 Ribonuclease R winged-helix domain IUJ48_18665 PF00575 S1 RNA binding domain IUJ48_18665 PF17876 Cold shock domain IUJ48_18685 PF13673 Acetyltransferase (GNAT) domain IUJ48_18695 PF03547 Membrane transport protein IUJ48_18700 PF04143 Sulphur transport IUJ48_18705 PF01645 Conserved region in glutamate synthase IUJ48_18710 PF13396 Phospholipase_D-nuclease N-terminal IUJ48_18710 PF13091 PLD-like domain IUJ48_18720 PF10017 Histidine-specific methyltransferase, SAM-dependent IUJ48_18755 PF00892 EamA-like transporter family IUJ48_18765 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_18765 PF00563 EAL domain IUJ48_18765 PF03707 Bacterial signalling protein N terminal repeat IUJ48_18785 PF00589 Phage integrase family IUJ48_18870 PF13687 Domain of unknown function (DUF4153) IUJ48_18880 PF01594 AI-2E family transporter IUJ48_18910 PF01322 Cytochrome C' IUJ48_18915 PF08328 Adenylosuccinate lyase C-terminal IUJ48_18915 PF00206 Lyase IUJ48_18920 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_18920 PF13417 Glutathione S-transferase, N-terminal domain IUJ48_18925 PF01925 Sulfite exporter TauE/SafE IUJ48_18935 PF03466 LysR substrate binding domain IUJ48_18935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_18940 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_18950 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IUJ48_18950 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IUJ48_18955 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IUJ48_18960 PF02233 NAD(P) transhydrogenase beta subunit IUJ48_18965 PF13183 4Fe-4S dicluster domain IUJ48_18965 PF02754 Cysteine-rich domain IUJ48_18970 PF01565 FAD binding domain IUJ48_18975 PF02913 FAD linked oxidases, C-terminal domain IUJ48_18975 PF01565 FAD binding domain IUJ48_18980 PF02913 FAD linked oxidases, C-terminal domain IUJ48_18980 PF01565 FAD binding domain IUJ48_18985 PF00793 DAHP synthetase I family IUJ48_18990 PF01523 Putative modulator of DNA gyrase IUJ48_18995 PF00816 H-NS histone family IUJ48_19005 PF01433 Peptidase family M1 domain IUJ48_19005 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IUJ48_19005 PF11940 Domain of unknown function (DUF3458) Ig-like fold IUJ48_19010 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IUJ48_19020 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_19020 PF14821 Threonine synthase N terminus IUJ48_19025 PF00742 Homoserine dehydrogenase IUJ48_19025 PF01842 ACT domain IUJ48_19025 PF03447 Homoserine dehydrogenase, NAD binding domain IUJ48_19030 PF00155 Aminotransferase class I and II IUJ48_19040 PF00578 AhpC/TSA family IUJ48_19045 PF02562 PhoH-like protein IUJ48_19045 PF13638 PIN domain IUJ48_19055 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_19065 PF02653 Branched-chain amino acid transport system / permease component IUJ48_19070 PF00005 ABC transporter IUJ48_19075 PF00005 ABC transporter IUJ48_19075 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_19105 PF00719 Inorganic pyrophosphatase IUJ48_19125 PF03900 Porphobilinogen deaminase, C-terminal domain IUJ48_19125 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IUJ48_19130 PF03741 Integral membrane protein TerC family IUJ48_19135 PF03741 Integral membrane protein TerC family IUJ48_19140 PF02629 CoA binding domain IUJ48_19140 PF00549 CoA-ligase IUJ48_19145 PF08442 ATP-grasp domain IUJ48_19145 PF00549 CoA-ligase IUJ48_19155 PF00550 Phosphopantetheine attachment site IUJ48_19155 PF00668 Condensation domain IUJ48_19155 PF13193 AMP-binding enzyme C-terminal domain IUJ48_19155 PF00501 AMP-binding enzyme IUJ48_19155 PF00975 Thioesterase domain IUJ48_19160 PF08267 Cobalamin-independent synthase, N-terminal domain IUJ48_19160 PF01717 Cobalamin-independent synthase, Catalytic domain IUJ48_19165 PF03466 LysR substrate binding domain IUJ48_19165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_19170 PF02631 RecX family IUJ48_19175 PF00154 recA bacterial DNA recombination protein IUJ48_19180 PF00072 Response regulator receiver domain IUJ48_19180 PF00486 Transcriptional regulatory protein, C terminal IUJ48_19185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_19185 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_19190 PF00083 Sugar (and other) transporter IUJ48_19190 PF08946 Osmosensory transporter coiled coil IUJ48_19200 PF04381 Putative exonuclease, RdgC IUJ48_19205 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_19210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ48_19210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ48_19260 PF00392 Bacterial regulatory proteins, gntR family IUJ48_19260 PF00155 Aminotransferase class I and II IUJ48_19285 PF13404 AsnC-type helix-turn-helix domain IUJ48_19285 PF01037 Lrp/AsnC ligand binding domain IUJ48_19295 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IUJ48_19300 PF13593 SBF-like CPA transporter family (DUF4137) IUJ48_19305 PF03796 DnaB-like helicase C terminal domain IUJ48_19305 PF00772 DnaB-like helicase N terminal domain IUJ48_19315 PF03948 Ribosomal protein L9, C-terminal domain IUJ48_19315 PF01281 Ribosomal protein L9, N-terminal domain IUJ48_19320 PF01084 Ribosomal protein S18 IUJ48_19330 PF01250 Ribosomal protein S6 IUJ48_19335 PF05675 Protein of unknown function (DUF817) IUJ48_19340 PF02649 Type I GTP cyclohydrolase folE2 IUJ48_19345 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IUJ48_19345 PF02779 Transketolase, pyrimidine binding domain IUJ48_19345 PF02780 Transketolase, C-terminal domain IUJ48_19350 PF00348 Polyprenyl synthetase IUJ48_19355 PF02609 Exonuclease VII small subunit IUJ48_19365 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_19380 PF01266 FAD dependent oxidoreductase IUJ48_19390 PF13419 Haloacid dehalogenase-like hydrolase IUJ48_19400 PF00005 ABC transporter IUJ48_19400 PF08402 TOBE domain IUJ48_19405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_19405 PF03466 LysR substrate binding domain IUJ48_19415 PF00581 Rhodanese-like domain IUJ48_19425 PF01435 Peptidase family M48 IUJ48_19430 PF03313 Serine dehydratase alpha chain IUJ48_19430 PF03315 Serine dehydratase beta chain IUJ48_19435 PF02690 Na+/Pi-cotransporter IUJ48_19440 PF01738 Dienelactone hydrolase family IUJ48_19450 PF01612 3'-5' exonuclease IUJ48_19450 PF00476 DNA polymerase family A IUJ48_19450 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IUJ48_19450 PF01367 5'-3' exonuclease, C-terminal SAM fold IUJ48_19455 PF03641 Possible lysine decarboxylase IUJ48_19460 PF01546 Peptidase family M20/M25/M40 IUJ48_19465 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_19470 PF03466 LysR substrate binding domain IUJ48_19470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_19475 PF03466 LysR substrate binding domain IUJ48_19475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_19485 PF03144 Elongation factor Tu domain 2 IUJ48_19485 PF00679 Elongation factor G C-terminus IUJ48_19485 PF00009 Elongation factor Tu GTP binding domain IUJ48_19490 PF16198 tRNA pseudouridylate synthase B C-terminal domain IUJ48_19490 PF01509 TruB family pseudouridylate synthase (N terminal domain) IUJ48_19495 PF02033 Ribosome-binding factor A IUJ48_19500 PF00009 Elongation factor Tu GTP binding domain IUJ48_19500 PF11987 Translation-initiation factor 2 IUJ48_19500 PF08364 Bacterial translation initiation factor IF-2 associated region IUJ48_19500 PF04760 Translation initiation factor IF-2, N-terminal region IUJ48_19505 PF13184 NusA-like KH domain IUJ48_19505 PF08529 NusA N-terminal domain IUJ48_19510 PF02576 RimP N-terminal domain IUJ48_19510 PF17384 RimP C-terminal SH3 domain IUJ48_19515 PF00849 RNA pseudouridylate synthase IUJ48_19515 PF01479 S4 domain IUJ48_19520 PF04079 Segregation and condensation complex subunit ScpB IUJ48_19535 PF03466 LysR substrate binding domain IUJ48_19535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_19540 PF07683 Cobalamin synthesis protein cobW C-terminal domain IUJ48_19540 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUJ48_19545 PF07683 Cobalamin synthesis protein cobW C-terminal domain IUJ48_19545 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUJ48_19560 PF00486 Transcriptional regulatory protein, C terminal IUJ48_19560 PF00072 Response regulator receiver domain IUJ48_19565 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_19565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_19565 PF08521 Two-component sensor kinase N-terminal IUJ48_19570 PF17820 PDZ domain IUJ48_19570 PF13180 PDZ domain IUJ48_19575 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_19575 PF14497 Glutathione S-transferase, C-terminal domain IUJ48_19580 PF02401 LytB protein IUJ48_19590 PF04002 RadC-like JAB domain IUJ48_19595 PF04199 Putative cyclase IUJ48_19600 PF03301 Tryptophan 2,3-dioxygenase IUJ48_19605 PF01197 Ribosomal protein L31 IUJ48_19615 PF01554 MatE IUJ48_19620 PF00501 AMP-binding enzyme IUJ48_19620 PF14535 AMP-binding enzyme C-terminal domain IUJ48_19625 PF03061 Thioesterase superfamily IUJ48_19630 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_19635 PF00171 Aldehyde dehydrogenase family IUJ48_19640 PF00970 Oxidoreductase FAD-binding domain IUJ48_19640 PF00175 Oxidoreductase NAD-binding domain IUJ48_19640 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_19645 PF01883 Iron-sulfur cluster assembly protein IUJ48_19650 PF05138 Phenylacetic acid catabolic protein IUJ48_19655 PF06243 Phenylacetic acid degradation B IUJ48_19660 PF05138 Phenylacetic acid catabolic protein IUJ48_19665 PF07848 PaaX-like protein IUJ48_19665 PF08223 PaaX-like protein C-terminal domain IUJ48_19670 PF03853 YjeF-related protein N-terminus IUJ48_19675 PF00929 Exonuclease IUJ48_19680 PF01435 Peptidase family M48 IUJ48_19685 PF03193 RsgA GTPase IUJ48_19690 PF00293 NUDIX domain IUJ48_19695 PF01245 Ribosomal protein L19 IUJ48_19710 PF04055 Radical SAM superfamily IUJ48_19715 PF00009 Elongation factor Tu GTP binding domain IUJ48_19725 PF17850 CysA C-terminal regulatory domain IUJ48_19725 PF12857 TOBE-like domain IUJ48_19725 PF00005 ABC transporter IUJ48_19730 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_19735 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_19745 PF10417 C-terminal domain of 1-Cys peroxiredoxin IUJ48_19745 PF00578 AhpC/TSA family IUJ48_19750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_19750 PF12806 Acetyl-CoA dehydrogenase C-terminal like IUJ48_19750 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_19750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_19755 PF02080 TrkA-C domain IUJ48_19755 PF06826 Predicted Permease Membrane Region IUJ48_19760 PF00155 Aminotransferase class I and II IUJ48_19765 PF06826 Predicted Permease Membrane Region IUJ48_19770 PF00766 Electron transfer flavoprotein FAD-binding domain IUJ48_19770 PF01012 Electron transfer flavoprotein domain IUJ48_19775 PF01012 Electron transfer flavoprotein domain IUJ48_19780 PF00850 Histone deacetylase domain IUJ48_19785 PF13406 Transglycosylase SLT domain IUJ48_19800 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_19805 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_19815 PF01370 NAD dependent epimerase/dehydratase family IUJ48_19820 PF00294 pfkB family carbohydrate kinase IUJ48_19825 PF18073 Rubredoxin metal binding domain IUJ48_19835 PF00216 Bacterial DNA-binding protein IUJ48_19840 PF00575 S1 RNA binding domain IUJ48_19845 PF02224 Cytidylate kinase IUJ48_19850 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUJ48_19860 PF00155 Aminotransferase class I and II IUJ48_19865 PF01842 ACT domain IUJ48_19865 PF01817 Chorismate mutase type II IUJ48_19865 PF00800 Prephenate dehydratase IUJ48_19870 PF00266 Aminotransferase class-V IUJ48_19875 PF03989 DNA gyrase C-terminal domain, beta-propeller IUJ48_19875 PF00521 DNA gyrase/topoisomerase IV, subunit A IUJ48_19880 PF00691 OmpA family IUJ48_19890 PF13419 Haloacid dehalogenase-like hydrolase IUJ48_19895 PF07690 Major Facilitator Superfamily IUJ48_19905 PF01545 Cation efflux family IUJ48_19910 PF02350 UDP-N-acetylglucosamine 2-epimerase IUJ48_19920 PF13632 Glycosyl transferase family group 2 IUJ48_19920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IUJ48_19930 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX IUJ48_19940 PF03062 MBOAT, membrane-bound O-acyltransferase family IUJ48_19950 PF00501 AMP-binding enzyme IUJ48_19950 PF13193 AMP-binding enzyme C-terminal domain IUJ48_19960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_19960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_19960 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_19975 PF13406 Transglycosylase SLT domain IUJ48_19980 PF03475 3-alpha domain IUJ48_19980 PF03473 MOSC domain IUJ48_19985 PF04305 Protein of unknown function (DUF455) IUJ48_20000 PF00005 ABC transporter IUJ48_20000 PF00664 ABC transporter transmembrane region IUJ48_20005 PF08443 RimK-like ATP-grasp domain IUJ48_20005 PF02875 Mur ligase family, glutamate ligase domain IUJ48_20005 PF08245 Mur ligase middle domain IUJ48_20010 PF02875 Mur ligase family, glutamate ligase domain IUJ48_20010 PF08245 Mur ligase middle domain IUJ48_20010 PF08443 RimK-like ATP-grasp domain IUJ48_20015 PF05532 CsbD-like IUJ48_20025 PF04972 BON domain IUJ48_20030 PF02567 Phenazine biosynthesis-like protein IUJ48_20045 PF13018 Extended Signal Peptide of Type V secretion system IUJ48_20045 PF04829 Pre-toxin domain with VENN motif IUJ48_20045 PF05860 haemagglutination activity domain IUJ48_20045 PF13332 Hemagglutinin repeat IUJ48_20050 PF17287 POTRA domain IUJ48_20050 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IUJ48_20050 PF08479 POTRA domain, ShlB-type IUJ48_20070 PF10634 Fe2+ transport protein IUJ48_20075 PF05233 PHB accumulation regulatory domain IUJ48_20075 PF07879 PHB/PHA accumulation regulator DNA-binding domain IUJ48_20080 PF00106 short chain dehydrogenase IUJ48_20085 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IUJ48_20090 PF02578 Multi-copper polyphenol oxidoreductase laccase IUJ48_20095 PF00849 RNA pseudouridylate synthase IUJ48_20095 PF01479 S4 domain IUJ48_20100 PF13525 Outer membrane lipoprotein IUJ48_20105 PF04851 Type III restriction enzyme, res subunit IUJ48_20105 PF13307 Helicase C-terminal domain IUJ48_20110 PF00575 S1 RNA binding domain IUJ48_20110 PF17674 HHH domain IUJ48_20110 PF16921 Tex protein YqgF-like domain IUJ48_20110 PF09371 Tex-like protein N-terminal domain IUJ48_20120 PF00579 tRNA synthetases class I (W and Y) IUJ48_20145 PF00593 TonB dependent receptor IUJ48_20145 PF07715 TonB-dependent Receptor Plug Domain IUJ48_20150 PF16220 Domain of unknown function (DUF4880) IUJ48_20150 PF04773 FecR protein IUJ48_20155 PF04542 Sigma-70 region 2 IUJ48_20155 PF08281 Sigma-70, region 4 IUJ48_20160 PF03969 AFG1-like ATPase IUJ48_20165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ48_20165 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_20170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ48_20170 PF00364 Biotin-requiring enzyme IUJ48_20170 PF02817 e3 binding domain IUJ48_20175 PF02779 Transketolase, pyrimidine binding domain IUJ48_20175 PF16078 2-oxoglutarate dehydrogenase N-terminus IUJ48_20175 PF00676 Dehydrogenase E1 component IUJ48_20175 PF16870 2-oxoglutarate dehydrogenase C-terminal IUJ48_20180 PF13404 AsnC-type helix-turn-helix domain IUJ48_20180 PF01037 Lrp/AsnC ligand binding domain IUJ48_20185 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_20195 PF07687 Peptidase dimerisation domain IUJ48_20195 PF01546 Peptidase family M20/M25/M40 IUJ48_20200 PF07687 Peptidase dimerisation domain IUJ48_20200 PF01546 Peptidase family M20/M25/M40 IUJ48_20205 PF03169 OPT oligopeptide transporter protein IUJ48_20210 PF00456 Transketolase, thiamine diphosphate binding domain IUJ48_20210 PF17831 Pyruvate dehydrogenase E1 component middle domain IUJ48_20215 PF03949 Malic enzyme, NAD binding domain IUJ48_20215 PF01515 Phosphate acetyl/butaryl transferase IUJ48_20215 PF00390 Malic enzyme, N-terminal domain IUJ48_20230 PF00285 Citrate synthase, C-terminal domain IUJ48_20235 PF03937 Flavinator of succinate dehydrogenase IUJ48_20240 PF13085 2Fe-2S iron-sulfur cluster binding domain IUJ48_20245 PF00890 FAD binding domain IUJ48_20245 PF02910 Fumarate reductase flavoprotein C-term IUJ48_20250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IUJ48_20255 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IUJ48_20260 PF07702 UTRA domain IUJ48_20260 PF00392 Bacterial regulatory proteins, gntR family IUJ48_20265 PF00056 lactate/malate dehydrogenase, NAD binding domain IUJ48_20265 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IUJ48_20275 PF00285 Citrate synthase, C-terminal domain IUJ48_20280 PF03972 MmgE/PrpD family IUJ48_20285 PF03653 Uncharacterised protein family (UPF0093) IUJ48_20290 PF02926 THUMP domain IUJ48_20290 PF01170 Putative RNA methylase family UPF0020 IUJ48_20320 PF13193 AMP-binding enzyme C-terminal domain IUJ48_20320 PF00501 AMP-binding enzyme IUJ48_20330 PF01430 Hsp33 protein IUJ48_20340 PF04977 Septum formation initiator IUJ48_20345 PF00113 Enolase, C-terminal TIM barrel domain IUJ48_20345 PF03952 Enolase, N-terminal domain IUJ48_20355 PF06418 CTP synthase N-terminus IUJ48_20355 PF00117 Glutamine amidotransferase class-I IUJ48_20365 PF01321 Creatinase/Prolidase N-terminal domain IUJ48_20365 PF00557 Metallopeptidase family M24 IUJ48_20375 PF03576 Peptidase family S58 IUJ48_20380 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_20380 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_20385 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_20390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_20395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_20395 PF00005 ABC transporter IUJ48_20400 PF01112 Asparaginase IUJ48_20410 PF13673 Acetyltransferase (GNAT) domain IUJ48_20415 PF01144 Coenzyme A transferase IUJ48_20420 PF01144 Coenzyme A transferase IUJ48_20435 PF01370 NAD dependent epimerase/dehydratase family IUJ48_20440 PF00067 Cytochrome P450 IUJ48_20455 PF00202 Aminotransferase class-III IUJ48_20460 PF01212 Beta-eliminating lyase IUJ48_20465 PF00892 EamA-like transporter family IUJ48_20470 PF00501 AMP-binding enzyme IUJ48_20470 PF13193 AMP-binding enzyme C-terminal domain IUJ48_20470 PF16177 Acetyl-coenzyme A synthetase N-terminus IUJ48_20480 PF03928 Haem-degrading IUJ48_20485 PF13193 AMP-binding enzyme C-terminal domain IUJ48_20485 PF00501 AMP-binding enzyme IUJ48_20485 PF16177 Acetyl-coenzyme A synthetase N-terminus IUJ48_20490 PF00877 NlpC/P60 family IUJ48_20500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_20500 PF03466 LysR substrate binding domain IUJ48_20505 PF00171 Aldehyde dehydrogenase family IUJ48_20515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_20525 PF00883 Cytosol aminopeptidase family, catalytic domain IUJ48_20525 PF02789 Cytosol aminopeptidase family, N-terminal domain IUJ48_20540 PF01027 Inhibitor of apoptosis-promoting Bax1 IUJ48_20555 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_20575 PF11967 Recombination protein O N terminal IUJ48_20575 PF02565 Recombination protein O C terminal IUJ48_20580 PF01926 50S ribosome-binding GTPase IUJ48_20580 PF07650 KH domain IUJ48_20585 PF00035 Double-stranded RNA binding motif IUJ48_20585 PF14622 Ribonuclease-III-like IUJ48_20590 PF10502 Signal peptidase, peptidase S26 IUJ48_20595 PF03144 Elongation factor Tu domain 2 IUJ48_20595 PF00009 Elongation factor Tu GTP binding domain IUJ48_20595 PF00679 Elongation factor G C-terminus IUJ48_20595 PF06421 GTP-binding protein LepA C-terminus IUJ48_20600 PF13180 PDZ domain IUJ48_20615 PF04542 Sigma-70 region 2 IUJ48_20615 PF08281 Sigma-70, region 4 IUJ48_20625 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ48_20625 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ48_20630 PF00550 Phosphopantetheine attachment site IUJ48_20640 PF00698 Acyl transferase domain IUJ48_20645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUJ48_20645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUJ48_20650 PF02504 Fatty acid synthesis protein IUJ48_20655 PF01783 Ribosomal L32p protein family IUJ48_20660 PF02620 Large ribosomal RNA subunit accumulation protein YceD IUJ48_20665 PF02545 Maf-like protein IUJ48_20670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ48_20680 PF01794 Ferric reductase like transmembrane component IUJ48_20685 PF00174 Oxidoreductase molybdopterin binding domain IUJ48_20690 PF13419 Haloacid dehalogenase-like hydrolase IUJ48_20695 PF01479 S4 domain IUJ48_20695 PF00849 RNA pseudouridylate synthase IUJ48_20700 PF12111 Polyribonucleotide phosphorylase C terminal IUJ48_20700 PF10150 Ribonuclease E/G family IUJ48_20700 PF00575 S1 RNA binding domain IUJ48_20705 PF09411 Lipid A 3-O-deacylase (PagL) IUJ48_20710 PF17848 Acetyl-coA carboxylase zinc finger domain IUJ48_20710 PF01039 Carboxyl transferase domain IUJ48_20715 PF00290 Tryptophan synthase alpha chain IUJ48_20720 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_20725 PF01546 Peptidase family M20/M25/M40 IUJ48_20725 PF07687 Peptidase dimerisation domain IUJ48_20730 PF07690 Major Facilitator Superfamily IUJ48_20735 PF04607 Region found in RelA / SpoT proteins IUJ48_20735 PF13291 ACT domain IUJ48_20735 PF02824 TGS domain IUJ48_20740 PF06167 Glucose-regulated metallo-peptidase M90 IUJ48_20750 PF01042 Endoribonuclease L-PSP IUJ48_20755 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IUJ48_20755 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IUJ48_20760 PF00037 4Fe-4S binding domain IUJ48_20760 PF11953 Domain of unknown function (DUF3470) IUJ48_20765 PF00175 Oxidoreductase NAD-binding domain IUJ48_20765 PF00970 Oxidoreductase FAD-binding domain IUJ48_20775 PF04060 Putative Fe-S cluster IUJ48_20780 PF10576 Iron-sulfur binding domain of endonuclease III IUJ48_20780 PF00633 Helix-hairpin-helix motif IUJ48_20780 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ48_20785 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_20785 PF00005 ABC transporter IUJ48_20790 PF00005 ABC transporter IUJ48_20800 PF02653 Branched-chain amino acid transport system / permease component IUJ48_20815 PF01063 Amino-transferase class IV IUJ48_20820 PF05506 Domain of unknown function (DUF756) IUJ48_20820 PF04185 Phosphoesterase family IUJ48_20830 PF00005 ABC transporter IUJ48_20835 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_20835 PF00005 ABC transporter IUJ48_20850 PF02632 BioY family IUJ48_20855 PF02361 Cobalt transport protein IUJ48_20860 PF00005 ABC transporter IUJ48_20865 PF01641 SelR domain IUJ48_20870 PF04279 Intracellular septation protein A IUJ48_20885 PF12826 Helix-hairpin-helix motif IUJ48_20885 PF00533 BRCA1 C Terminus (BRCT) domain IUJ48_20885 PF03120 NAD-dependent DNA ligase OB-fold domain IUJ48_20885 PF01653 NAD-dependent DNA ligase adenylation domain IUJ48_20885 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IUJ48_20895 PF02463 RecF/RecN/SMC N terminal domain IUJ48_20895 PF06470 SMC proteins Flexible Hinge Domain IUJ48_20900 PF07690 Major Facilitator Superfamily IUJ48_20905 PF03167 Uracil DNA glycosylase superfamily IUJ48_20910 PF00814 Glycoprotease family IUJ48_20915 PF00486 Transcriptional regulatory protein, C terminal IUJ48_20915 PF00072 Response regulator receiver domain IUJ48_20920 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_20920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_20920 PF00672 HAMP domain IUJ48_20925 PF00578 AhpC/TSA family IUJ48_20930 PF02627 Carboxymuconolactone decarboxylase family IUJ48_20940 PF02542 YgbB family IUJ48_20945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IUJ48_20950 PF00271 Helicase conserved C-terminal domain IUJ48_20950 PF02559 CarD-like/TRCF domain IUJ48_20950 PF17757 UvrB interaction domain IUJ48_20950 PF03461 TRCF domain IUJ48_20950 PF00270 DEAD/DEAH box helicase IUJ48_20960 PF00593 TonB dependent receptor IUJ48_20960 PF07715 TonB-dependent Receptor Plug Domain IUJ48_20965 PF00593 TonB dependent receptor IUJ48_20965 PF07715 TonB-dependent Receptor Plug Domain IUJ48_20975 PF00361 Proton-conducting membrane transporter IUJ48_20980 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus IUJ48_20980 PF00361 Proton-conducting membrane transporter IUJ48_20985 PF00361 Proton-conducting membrane transporter IUJ48_20985 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IUJ48_20990 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IUJ48_20995 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IUJ48_21000 PF12838 4Fe-4S dicluster domain IUJ48_21005 PF00146 NADH dehydrogenase IUJ48_21010 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IUJ48_21010 PF00384 Molybdopterin oxidoreductase IUJ48_21010 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal IUJ48_21015 PF10531 SLBB domain IUJ48_21015 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IUJ48_21015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IUJ48_21025 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IUJ48_21030 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IUJ48_21035 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IUJ48_21040 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IUJ48_21045 PF13609 Gram-negative porin IUJ48_21070 PF00149 Calcineurin-like phosphoesterase IUJ48_21075 PF00781 Diacylglycerol kinase catalytic domain IUJ48_21085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_21090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_21090 PF03466 LysR substrate binding domain IUJ48_21095 PF08361 MAATS-type transcriptional repressor, C-terminal region IUJ48_21095 PF00440 Bacterial regulatory proteins, tetR family IUJ48_21100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_21100 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_21105 PF00873 AcrB/AcrD/AcrF family IUJ48_21110 PF02321 Outer membrane efflux protein IUJ48_21120 PF02321 Outer membrane efflux protein IUJ48_21125 PF00873 AcrB/AcrD/AcrF family IUJ48_21130 PF13533 Biotin-lipoyl like IUJ48_21135 PF02028 BCCT, betaine/carnitine/choline family transporter IUJ48_21145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_21150 PF00873 AcrB/AcrD/AcrF family IUJ48_21155 PF02321 Outer membrane efflux protein IUJ48_21165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_21170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_21180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_21180 PF00005 ABC transporter IUJ48_21185 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_21185 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_21190 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_21200 PF01037 Lrp/AsnC ligand binding domain IUJ48_21205 PF07715 TonB-dependent Receptor Plug Domain IUJ48_21205 PF07660 Secretin and TonB N terminus short domain IUJ48_21205 PF00593 TonB dependent receptor IUJ48_21210 PF05661 Protein of unknown function (DUF808) IUJ48_21215 PF06906 Protein of unknown function (DUF1272) IUJ48_21220 PF04405 Domain of Unknown function (DUF542) IUJ48_21220 PF01814 Hemerythrin HHE cation binding domain IUJ48_21225 PF00158 Sigma-54 interaction domain IUJ48_21225 PF02954 Bacterial regulatory protein, Fis family IUJ48_21240 PF00072 Response regulator receiver domain IUJ48_21240 PF13426 PAS domain IUJ48_21240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_21245 PF00483 Nucleotidyl transferase IUJ48_21250 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_21250 PF00072 Response regulator receiver domain IUJ48_21255 PF00149 Calcineurin-like phosphoesterase IUJ48_21265 PF00106 short chain dehydrogenase IUJ48_21270 PF03600 Citrate transporter IUJ48_21275 PF00072 Response regulator receiver domain IUJ48_21275 PF00486 Transcriptional regulatory protein, C terminal IUJ48_21280 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_21280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_21295 PF00593 TonB dependent receptor IUJ48_21295 PF07715 TonB-dependent Receptor Plug Domain IUJ48_21300 PF04773 FecR protein IUJ48_21300 PF16220 Domain of unknown function (DUF4880) IUJ48_21305 PF08281 Sigma-70, region 4 IUJ48_21305 PF04542 Sigma-70 region 2 IUJ48_21320 PF00005 ABC transporter IUJ48_21350 PF13195 Protein of unknown function (DUF4011) IUJ48_21350 PF13086 AAA domain IUJ48_21350 PF13195 Protein of unknown function (DUF4011) IUJ48_21350 PF13086 AAA domain IUJ48_21350 PF13087 AAA domain IUJ48_21350 PF13087 AAA domain IUJ48_21355 PF12727 PBP superfamily domain IUJ48_21355 PF12728 Helix-turn-helix domain IUJ48_21375 PF00672 HAMP domain IUJ48_21375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_21375 PF02203 Tar ligand binding domain homologue IUJ48_21400 PF05736 OprF membrane domain IUJ48_21400 PF00691 OmpA family IUJ48_21415 PF03840 Preprotein translocase SecG subunit IUJ48_21420 PF00121 Triosephosphate isomerase IUJ48_21425 PF08990 Erythronolide synthase docking IUJ48_21425 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ48_21425 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ48_21425 PF08659 KR domain IUJ48_21425 PF00550 Phosphopantetheine attachment site IUJ48_21425 PF14765 Polyketide synthase dehydratase IUJ48_21425 PF16197 Ketoacyl-synthetase C-terminal extension IUJ48_21425 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_21425 PF00698 Acyl transferase domain IUJ48_21440 PF07690 Major Facilitator Superfamily IUJ48_21445 PF12833 Helix-turn-helix domain IUJ48_21445 PF12852 Cupin IUJ48_21450 PF03466 LysR substrate binding domain IUJ48_21450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_21455 PF00795 Carbon-nitrogen hydrolase IUJ48_21465 PF13291 ACT domain IUJ48_21465 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_21475 PF00013 KH domain IUJ48_21475 PF01138 3' exoribonuclease family, domain 1 IUJ48_21475 PF03725 3' exoribonuclease family, domain 2 IUJ48_21475 PF00575 S1 RNA binding domain IUJ48_21475 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IUJ48_21480 PF00312 Ribosomal protein S15 IUJ48_21490 PF01066 CDP-alcohol phosphatidyltransferase IUJ48_21495 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IUJ48_21495 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IUJ48_21500 PF10369 Small subunit of acetolactate synthase IUJ48_21505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_21505 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ48_21505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_21510 PF12805 FUSC-like inner membrane protein yccS IUJ48_21515 PF03883 Peroxide stress protein YaaA IUJ48_21520 PF00106 short chain dehydrogenase IUJ48_21525 PF02254 TrkA-N domain IUJ48_21525 PF00999 Sodium/hydrogen exchanger family IUJ48_21540 PF00664 ABC transporter transmembrane region IUJ48_21540 PF00005 ABC transporter IUJ48_21540 PF08021 Siderophore-interacting FAD-binding domain IUJ48_21540 PF04954 Siderophore-interacting protein IUJ48_21545 PF00005 ABC transporter IUJ48_21550 PF01032 FecCD transport family IUJ48_21555 PF01032 FecCD transport family IUJ48_21560 PF00005 ABC transporter IUJ48_21565 PF01497 Periplasmic binding protein IUJ48_21570 PF07715 TonB-dependent Receptor Plug Domain IUJ48_21570 PF00593 TonB dependent receptor IUJ48_21575 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_21580 PF00701 Dihydrodipicolinate synthetase family IUJ48_21585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IUJ48_21585 PF13378 Enolase C-terminal domain-like IUJ48_21595 PF01979 Amidohydrolase family IUJ48_21620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ48_21620 PF02403 Seryl-tRNA synthetase N-terminal domain IUJ48_21625 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_21625 PF16193 AAA C-terminal domain IUJ48_21625 PF12002 MgsA AAA+ ATPase C terminal IUJ48_21630 PF00795 Carbon-nitrogen hydrolase IUJ48_21640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_21645 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_21650 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_21650 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_21655 PF00005 ABC transporter IUJ48_21655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_21660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_21660 PF00005 ABC transporter IUJ48_21665 PF01380 SIS domain IUJ48_21665 PF00571 CBS domain IUJ48_21670 PF07969 Amidohydrolase family IUJ48_21675 PF01042 Endoribonuclease L-PSP IUJ48_21680 PF03548 Outer membrane lipoprotein carrier protein LolA IUJ48_21685 PF17854 FtsK alpha domain IUJ48_21685 PF09397 Ftsk gamma domain IUJ48_21685 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IUJ48_21685 PF01580 FtsK/SpoIIIE family IUJ48_21690 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_21695 PF00488 MutS domain V IUJ48_21695 PF01713 Smr domain IUJ48_21700 PF00893 Small Multidrug Resistance protein IUJ48_21705 PF00474 Sodium:solute symporter family IUJ48_21720 PF03814 Potassium-transporting ATPase A subunit IUJ48_21730 PF02669 K+-transporting ATPase, c chain IUJ48_21735 PF02702 Osmosensitive K+ channel His kinase sensor domain IUJ48_21735 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_21735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_21735 PF13493 Domain of unknown function (DUF4118) IUJ48_21735 PF13492 GAF domain IUJ48_21740 PF00486 Transcriptional regulatory protein, C terminal IUJ48_21740 PF00072 Response regulator receiver domain IUJ48_21755 PF00701 Dihydrodipicolinate synthetase family IUJ48_21760 PF17200 Single Cache domain 2 IUJ48_21760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_21760 PF00672 HAMP domain IUJ48_21775 PF00180 Isocitrate/isopropylmalate dehydrogenase IUJ48_21790 PF00034 Cytochrome c IUJ48_21795 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_21795 PF17862 AAA+ lid domain IUJ48_21795 PF01434 Peptidase family M41 IUJ48_21815 PF13302 Acetyltransferase (GNAT) domain IUJ48_21820 PF00675 Insulinase (Peptidase family M16) IUJ48_21820 PF05193 Peptidase M16 inactive domain IUJ48_21830 PF00684 DnaJ central domain IUJ48_21830 PF00226 DnaJ domain IUJ48_21830 PF01556 DnaJ C terminal domain IUJ48_21835 PF00012 Hsp70 protein IUJ48_21845 PF01025 GrpE IUJ48_21855 PF00762 Ferrochelatase IUJ48_21860 PF01628 HrcA protein C terminal domain IUJ48_21860 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding IUJ48_21865 PF01513 ATP-NAD kinase IUJ48_21870 PF02463 RecF/RecN/SMC N terminal domain IUJ48_21875 PF01475 Ferric uptake regulator family IUJ48_21880 PF04355 SmpA / OmlA family IUJ48_21885 PF05173 Dihydrodipicolinate reductase, C-terminus IUJ48_21885 PF01113 Dihydrodipicolinate reductase, N-terminus IUJ48_21890 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IUJ48_21890 PF01565 FAD binding domain IUJ48_21905 PF00589 Phage integrase family IUJ48_21905 PF13356 Arm DNA-binding domain IUJ48_21910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_21910 PF03466 LysR substrate binding domain IUJ48_21915 PF01648 4'-phosphopantetheinyl transferase superfamily IUJ48_21915 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IUJ48_21920 PF00501 AMP-binding enzyme IUJ48_21920 PF13193 AMP-binding enzyme C-terminal domain IUJ48_21925 PF00975 Thioesterase domain IUJ48_21935 PF00698 Acyl transferase domain IUJ48_21935 PF00668 Condensation domain IUJ48_21935 PF16197 Ketoacyl-synthetase C-terminal extension IUJ48_21935 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ48_21935 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ48_21935 PF00550 Phosphopantetheine attachment site IUJ48_21940 PF08242 Methyltransferase domain IUJ48_21940 PF00550 Phosphopantetheine attachment site IUJ48_21940 PF00668 Condensation domain IUJ48_21940 PF00501 AMP-binding enzyme IUJ48_21945 PF02321 Outer membrane efflux protein IUJ48_21950 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_21965 PF00664 ABC transporter transmembrane region IUJ48_21965 PF00005 ABC transporter IUJ48_21980 PF13649 Methyltransferase domain IUJ48_21985 PF12833 Helix-turn-helix domain IUJ48_21990 PF07690 Major Facilitator Superfamily IUJ48_21995 PF00664 ABC transporter transmembrane region IUJ48_21995 PF04954 Siderophore-interacting protein IUJ48_21995 PF08021 Siderophore-interacting FAD-binding domain IUJ48_21995 PF00005 ABC transporter IUJ48_22000 PF00005 ABC transporter IUJ48_22005 PF00593 TonB dependent receptor IUJ48_22005 PF07715 TonB-dependent Receptor Plug Domain IUJ48_22015 PF07690 Major Facilitator Superfamily IUJ48_22030 PF02627 Carboxymuconolactone decarboxylase family IUJ48_22035 PF01022 Bacterial regulatory protein, arsR family IUJ48_22040 PF00581 Rhodanese-like domain IUJ48_22040 PF11127 Protein of unknown function (DUF2892) IUJ48_22060 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system IUJ48_22100 PF00593 TonB dependent receptor IUJ48_22100 PF07715 TonB-dependent Receptor Plug Domain IUJ48_22110 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_22115 PF00155 Aminotransferase class I and II IUJ48_22120 PF01554 MatE IUJ48_22130 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ48_22135 PF00593 TonB dependent receptor IUJ48_22135 PF07715 TonB-dependent Receptor Plug Domain IUJ48_22140 PF13732 Domain of unknown function (DUF4162) IUJ48_22140 PF00005 ABC transporter IUJ48_22170 PF07715 TonB-dependent Receptor Plug Domain IUJ48_22170 PF00593 TonB dependent receptor IUJ48_22185 PF07690 Major Facilitator Superfamily IUJ48_22205 PF00557 Metallopeptidase family M24 IUJ48_22220 PF01613 Flavin reductase like domain IUJ48_22275 PF00216 Bacterial DNA-binding protein IUJ48_22335 PF12728 Helix-turn-helix domain IUJ48_22345 PF17862 AAA+ lid domain IUJ48_22345 PF01434 Peptidase family M41 IUJ48_22345 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_22345 PF06480 FtsH Extracellular IUJ48_22440 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IUJ48_22465 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IUJ48_22495 PF06067 Domain of unknown function (DUF932) IUJ48_22520 PF00403 Heavy-metal-associated domain IUJ48_22520 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_22520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ48_22525 PF00403 Heavy-metal-associated domain IUJ48_22530 PF02411 MerT mercuric transport protein IUJ48_22535 PF09278 MerR, DNA binding IUJ48_22535 PF00376 MerR family regulatory protein IUJ48_22580 PF01252 Signal peptidase (SPase) II IUJ48_22585 PF00403 Heavy-metal-associated domain IUJ48_22590 PF13411 MerR HTH family regulatory protein IUJ48_22605 PF01751 Toprim domain IUJ48_22605 PF01131 DNA topoisomerase IUJ48_22610 PF00436 Single-strand binding protein family IUJ48_22645 PF13614 AAA domain IUJ48_22690 PF03466 LysR substrate binding domain IUJ48_22690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_22700 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IUJ48_22705 PF04377 Arginine-tRNA-protein transferase, C terminus IUJ48_22705 PF04376 Arginine-tRNA-protein transferase, N terminus IUJ48_22710 PF01180 Dihydroorotate dehydrogenase IUJ48_22720 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_22725 PF01614 Bacterial transcriptional regulator IUJ48_22725 PF09339 IclR helix-turn-helix domain IUJ48_22730 PF02464 Competence-damaged protein IUJ48_22730 PF18146 Damage-inducible protein CinA KH domain IUJ48_22730 PF00994 Probable molybdopterin binding domain IUJ48_22745 PF00270 DEAD/DEAH box helicase IUJ48_22745 PF00271 Helicase conserved C-terminal domain IUJ48_22755 PF07715 TonB-dependent Receptor Plug Domain IUJ48_22755 PF00593 TonB dependent receptor IUJ48_22760 PF07690 Major Facilitator Superfamily IUJ48_22765 PF01494 FAD binding domain IUJ48_22780 PF01063 Amino-transferase class IV IUJ48_22800 PF13181 Tetratricopeptide repeat IUJ48_22800 PF01435 Peptidase family M48 IUJ48_22805 PF00483 Nucleotidyl transferase IUJ48_22815 PF13609 Gram-negative porin IUJ48_22820 PF00690 Cation transporter/ATPase, N-terminus IUJ48_22820 PF00689 Cation transporting ATPase, C-terminus IUJ48_22835 PF05195 Aminopeptidase P, N-terminal domain IUJ48_22835 PF00557 Metallopeptidase family M24 IUJ48_22845 PF01494 FAD binding domain IUJ48_22850 PF01207 Dihydrouridine synthase (Dus) IUJ48_22855 PF02954 Bacterial regulatory protein, Fis family IUJ48_22860 PF02142 MGS-like domain IUJ48_22860 PF01808 AICARFT/IMPCHase bienzyme IUJ48_22865 PF02075 Crossover junction endodeoxyribonuclease RuvC IUJ48_22870 PF01330 RuvA N terminal domain IUJ48_22870 PF07499 RuvA, C-terminal domain IUJ48_22875 PF01370 NAD dependent epimerase/dehydratase family IUJ48_22875 PF08338 Domain of unknown function (DUF1731) IUJ48_22880 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_22885 PF05496 Holliday junction DNA helicase RuvB P-loop domain IUJ48_22885 PF05491 RuvB C-terminal winged helix domain IUJ48_22885 PF17864 RuvB AAA lid domain IUJ48_22890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_22890 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_22895 PF00072 Response regulator receiver domain IUJ48_22895 PF00486 Transcriptional regulatory protein, C terminal IUJ48_22905 PF00570 HRDC domain IUJ48_22905 PF00271 Helicase conserved C-terminal domain IUJ48_22905 PF09382 RQC domain IUJ48_22905 PF16124 RecQ zinc-binding IUJ48_22905 PF00270 DEAD/DEAH box helicase IUJ48_22910 PF02322 Cytochrome bd terminal oxidase subunit II IUJ48_22920 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IUJ48_22920 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ48_22925 PF05209 Septum formation inhibitor MinC, N-terminal domain IUJ48_22925 PF03775 Septum formation inhibitor MinC, C-terminal domain IUJ48_22930 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IUJ48_22935 PF03776 Septum formation topological specificity factor MinE IUJ48_22950 PF01850 PIN domain IUJ48_22960 PF12848 ABC transporter IUJ48_22960 PF00005 ABC transporter IUJ48_22965 PF02522 Aminoglycoside 3-N-acetyltransferase IUJ48_22985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_22985 PF00005 ABC transporter IUJ48_22990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_22990 PF00005 ABC transporter IUJ48_22995 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_22995 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_23000 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_23005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_23025 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_23030 PF00355 Rieske [2Fe-2S] domain IUJ48_23030 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IUJ48_23035 PF00866 Ring hydroxylating beta subunit IUJ48_23040 PF13193 AMP-binding enzyme C-terminal domain IUJ48_23040 PF00501 AMP-binding enzyme IUJ48_23055 PF04199 Putative cyclase IUJ48_23075 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_23075 PF00005 ABC transporter IUJ48_23080 PF00005 ABC transporter IUJ48_23085 PF00535 Glycosyl transferase family 2 IUJ48_23090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23090 PF03466 LysR substrate binding domain IUJ48_23095 PF00294 pfkB family carbohydrate kinase IUJ48_23100 PF01081 KDPG and KHG aldolase IUJ48_23110 PF17760 UvrA interaction domain IUJ48_23110 PF00005 ABC transporter IUJ48_23110 PF17755 UvrA DNA-binding domain IUJ48_23115 PF00425 chorismate binding enzyme IUJ48_23115 PF04715 Anthranilate synthase component I, N terminal region IUJ48_23125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23125 PF03466 LysR substrate binding domain IUJ48_23135 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IUJ48_23135 PF00355 Rieske [2Fe-2S] domain IUJ48_23140 PF13577 SnoaL-like domain IUJ48_23145 PF00355 Rieske [2Fe-2S] domain IUJ48_23150 PF00899 ThiF family IUJ48_23155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_23155 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_23165 PF12704 MacB-like periplasmic core domain IUJ48_23165 PF00005 ABC transporter IUJ48_23165 PF02687 FtsX-like permease family IUJ48_23170 PF00005 ABC transporter IUJ48_23195 PF00005 ABC transporter IUJ48_23195 PF02687 FtsX-like permease family IUJ48_23195 PF12704 MacB-like periplasmic core domain IUJ48_23215 PF03466 LysR substrate binding domain IUJ48_23215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23220 PF02321 Outer membrane efflux protein IUJ48_23225 PF12704 MacB-like periplasmic core domain IUJ48_23225 PF00005 ABC transporter IUJ48_23225 PF02687 FtsX-like permease family IUJ48_23230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_23235 PF07690 Major Facilitator Superfamily IUJ48_23245 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IUJ48_23245 PF01243 Pyridoxamine 5'-phosphate oxidase IUJ48_23250 PF01613 Flavin reductase like domain IUJ48_23255 PF01266 FAD dependent oxidoreductase IUJ48_23260 PF00551 Formyl transferase IUJ48_23265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23265 PF03466 LysR substrate binding domain IUJ48_23270 PF00465 Iron-containing alcohol dehydrogenase IUJ48_23275 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IUJ48_23280 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_23285 PF01070 FMN-dependent dehydrogenase IUJ48_23295 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_23300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23300 PF03466 LysR substrate binding domain IUJ48_23305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_23305 PF18158 Adaptive response protein AidB N-terminal domain IUJ48_23305 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_23310 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_23315 PF02515 CoA-transferase family III IUJ48_23320 PF13520 Amino acid permease IUJ48_23330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23330 PF03466 LysR substrate binding domain IUJ48_23335 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_23345 PF00206 Lyase IUJ48_23345 PF10415 Fumarase C C-terminus IUJ48_23350 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IUJ48_23355 PF11741 AMIN domain IUJ48_23355 PF01520 N-acetylmuramoyl-L-alanine amidase IUJ48_23360 PF07715 TonB-dependent Receptor Plug Domain IUJ48_23360 PF00593 TonB dependent receptor IUJ48_23365 PF09335 SNARE associated Golgi protein IUJ48_23370 PF01119 DNA mismatch repair protein, C-terminal domain IUJ48_23370 PF08676 MutL C terminal dimerisation domain IUJ48_23385 PF00586 AIR synthase related protein, N-terminal domain IUJ48_23385 PF02769 AIR synthase related protein, C-terminal domain IUJ48_23390 PF00308 Bacterial dnaA protein IUJ48_23400 PF12626 Polymerase A arginine-rich C-terminus IUJ48_23400 PF12627 Probable RNA and SrmB- binding site of polymerase A IUJ48_23400 PF01743 Poly A polymerase head domain IUJ48_23405 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IUJ48_23410 PF00294 pfkB family carbohydrate kinase IUJ48_23415 PF03328 HpcH/HpaI aldolase/citrate lyase family IUJ48_23420 PF02515 CoA-transferase family III IUJ48_23430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23430 PF03466 LysR substrate binding domain IUJ48_23435 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_23440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_23440 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_23440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_23445 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_23445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_23445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_23455 PF02803 Thiolase, C-terminal domain IUJ48_23455 PF00108 Thiolase, N-terminal domain IUJ48_23460 PF13193 AMP-binding enzyme C-terminal domain IUJ48_23460 PF00501 AMP-binding enzyme IUJ48_23465 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_23470 PF03060 Nitronate monooxygenase IUJ48_23475 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_23485 PF00106 short chain dehydrogenase IUJ48_23490 PF01575 MaoC like domain IUJ48_23495 PF02515 CoA-transferase family III IUJ48_23505 PF13426 PAS domain IUJ48_23505 PF08447 PAS fold IUJ48_23505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_23515 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_23520 PF02091 Glycyl-tRNA synthetase alpha subunit IUJ48_23525 PF05746 DALR anticodon binding domain IUJ48_23525 PF02092 Glycyl-tRNA synthetase beta subunit IUJ48_23535 PF01553 Acyltransferase IUJ48_23545 PF00266 Aminotransferase class-V IUJ48_23550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ48_23555 PF01327 Polypeptide deformylase IUJ48_23560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_23560 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_23560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_23560 PF09317 Domain of unknown function (DUF1974) IUJ48_23565 PF07670 Nucleoside recognition IUJ48_23570 PF02887 Pyruvate kinase, alpha/beta domain IUJ48_23570 PF00224 Pyruvate kinase, barrel domain IUJ48_23575 PF02595 Glycerate kinase family IUJ48_23580 PF00398 Ribosomal RNA adenine dimethylase IUJ48_23585 PF09312 SurA N-terminal domain IUJ48_23585 PF00639 PPIC-type PPIASE domain IUJ48_23590 PF04453 LPS transport system D IUJ48_23595 PF01636 Phosphotransferase enzyme family IUJ48_23600 PF00483 Nucleotidyl transferase IUJ48_23610 PF01494 FAD binding domain IUJ48_23625 PF01329 Pterin 4 alpha carbinolamine dehydratase IUJ48_23630 PF04972 BON domain IUJ48_23630 PF00691 OmpA family IUJ48_23645 PF02525 Flavodoxin-like fold IUJ48_23670 PF17151 Periplasmic sensor domain IUJ48_23670 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_23675 PF05170 AsmA family IUJ48_23680 PF00884 Sulfatase IUJ48_23685 PF03352 Methyladenine glycosylase IUJ48_23690 PF03692 Putative zinc- or iron-chelating domain IUJ48_23710 PF01475 Ferric uptake regulator family IUJ48_23720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23720 PF03466 LysR substrate binding domain IUJ48_23725 PF02203 Tar ligand binding domain homologue IUJ48_23725 PF00672 HAMP domain IUJ48_23725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_23740 PF00593 TonB dependent receptor IUJ48_23740 PF07715 TonB-dependent Receptor Plug Domain IUJ48_23745 PF16220 Domain of unknown function (DUF4880) IUJ48_23745 PF04773 FecR protein IUJ48_23750 PF08281 Sigma-70, region 4 IUJ48_23750 PF04542 Sigma-70 region 2 IUJ48_23760 PF03180 NLPA lipoprotein IUJ48_23765 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_23770 PF09383 NIL domain IUJ48_23770 PF00005 ABC transporter IUJ48_23775 PF13802 Galactose mutarotase-like IUJ48_23775 PF01055 Glycosyl hydrolases family 31 IUJ48_23780 PF01266 FAD dependent oxidoreductase IUJ48_23780 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IUJ48_23785 PF00459 Inositol monophosphatase family IUJ48_23790 PF00501 AMP-binding enzyme IUJ48_23790 PF13193 AMP-binding enzyme C-terminal domain IUJ48_23795 PF07687 Peptidase dimerisation domain IUJ48_23795 PF01546 Peptidase family M20/M25/M40 IUJ48_23800 PF03466 LysR substrate binding domain IUJ48_23800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_23805 PF03601 Conserved hypothetical protein 698 IUJ48_23810 PF03061 Thioesterase superfamily IUJ48_23815 PF00571 CBS domain IUJ48_23815 PF01769 Divalent cation transporter IUJ48_23815 PF03448 MgtE intracellular N domain IUJ48_23820 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP IUJ48_23830 PF01037 Lrp/AsnC ligand binding domain IUJ48_23835 PF00106 short chain dehydrogenase IUJ48_23845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_23845 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ48_23845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_23850 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_23855 PF00392 Bacterial regulatory proteins, gntR family IUJ48_23855 PF07729 FCD domain IUJ48_23865 PF07516 SecA Wing and Scaffold domain IUJ48_23865 PF01043 SecA preprotein cross-linking domain IUJ48_23865 PF07517 SecA DEAD-like domain IUJ48_23865 PF02810 SEC-C motif IUJ48_23870 PF01551 Peptidase family M23 IUJ48_23870 PF08525 Opacity-associated protein A N-terminal motif IUJ48_23870 PF01476 LysM domain IUJ48_23880 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IUJ48_23885 PF00091 Tubulin/FtsZ family, GTPase domain IUJ48_23885 PF12327 FtsZ family, C-terminal domain IUJ48_23890 PF02491 SHS2 domain inserted in FTSA IUJ48_23895 PF03799 Cell division protein FtsQ IUJ48_23895 PF08478 POTRA domain, FtsQ-type IUJ48_23900 PF01820 D-ala D-ala ligase N-terminus IUJ48_23900 PF07478 D-ala D-ala ligase C-terminus IUJ48_23905 PF08245 Mur ligase middle domain IUJ48_23905 PF01225 Mur ligase family, catalytic domain IUJ48_23905 PF02875 Mur ligase family, glutamate ligase domain IUJ48_23910 PF04101 Glycosyltransferase family 28 C-terminal domain IUJ48_23910 PF03033 Glycosyltransferase family 28 N-terminal domain IUJ48_23915 PF01098 Cell cycle protein IUJ48_23920 PF02875 Mur ligase family, glutamate ligase domain IUJ48_23920 PF08245 Mur ligase middle domain IUJ48_23925 PF00953 Glycosyl transferase family 4 IUJ48_23930 PF02875 Mur ligase family, glutamate ligase domain IUJ48_23930 PF08245 Mur ligase middle domain IUJ48_23935 PF03717 Penicillin-binding Protein dimerisation domain IUJ48_23935 PF00905 Penicillin binding protein transpeptidase domain IUJ48_23940 PF04999 Cell division protein FtsL IUJ48_23945 PF01795 MraW methylase family IUJ48_23950 PF02381 MraZ protein, putative antitoxin-like IUJ48_23960 PF12848 ABC transporter IUJ48_23960 PF16326 ABC transporter C-terminal domain IUJ48_23960 PF00005 ABC transporter IUJ48_23965 PF01979 Amidohydrolase family IUJ48_23970 PF01546 Peptidase family M20/M25/M40 IUJ48_23970 PF07687 Peptidase dimerisation domain IUJ48_23980 PF03466 LysR substrate binding domain IUJ48_23980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_24020 PF01037 Lrp/AsnC ligand binding domain IUJ48_24025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ48_24030 PF01625 Peptide methionine sulfoxide reductase IUJ48_24035 PF00034 Cytochrome c IUJ48_24040 PF00920 Dehydratase family IUJ48_24045 PF01790 Prolipoprotein diacylglyceryl transferase IUJ48_24075 PF01970 Tripartite tricarboxylate transporter TctA family IUJ48_24085 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ48_24085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ48_24090 PF02525 Flavodoxin-like fold IUJ48_24095 PF03466 LysR substrate binding domain IUJ48_24095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_24100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_24105 PF01970 Tripartite tricarboxylate transporter TctA family IUJ48_24115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_24115 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_24120 PF00072 Response regulator receiver domain IUJ48_24120 PF00486 Transcriptional regulatory protein, C terminal IUJ48_24125 PF00293 NUDIX domain IUJ48_24130 PF03129 Anticodon binding domain IUJ48_24130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ48_24130 PF04073 Aminoacyl-tRNA editing domain IUJ48_24135 PF03061 Thioesterase superfamily IUJ48_24140 PF01618 MotA/TolQ/ExbB proton channel family IUJ48_24145 PF02472 Biopolymer transport protein ExbD/TolR IUJ48_24155 PF04052 TolB amino-terminal domain IUJ48_24155 PF07676 WD40-like Beta Propeller Repeat IUJ48_24160 PF00691 OmpA family IUJ48_24170 PF01032 FecCD transport family IUJ48_24175 PF00005 ABC transporter IUJ48_24190 PF01037 Lrp/AsnC ligand binding domain IUJ48_24200 PF03764 Elongation factor G, domain IV IUJ48_24200 PF14492 Elongation Factor G, domain II IUJ48_24200 PF00679 Elongation factor G C-terminus IUJ48_24200 PF00009 Elongation factor Tu GTP binding domain IUJ48_24200 PF03144 Elongation factor Tu domain 2 IUJ48_24205 PF00582 Universal stress protein family IUJ48_24215 PF00155 Aminotransferase class I and II IUJ48_24215 PF00392 Bacterial regulatory proteins, gntR family IUJ48_24220 PF00892 EamA-like transporter family IUJ48_24225 PF01810 LysE type translocator IUJ48_24230 PF04172 LrgB-like family IUJ48_24235 PF03788 LrgA family IUJ48_24240 PF03466 LysR substrate binding domain IUJ48_24240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_24250 PF00701 Dihydrodipicolinate synthetase family IUJ48_24255 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_24255 PF00005 ABC transporter IUJ48_24260 PF00005 ABC transporter IUJ48_24270 PF02653 Branched-chain amino acid transport system / permease component IUJ48_24290 PF03466 LysR substrate binding domain IUJ48_24290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_24305 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IUJ48_24310 PF00535 Glycosyl transferase family 2 IUJ48_24320 PF03616 Sodium/glutamate symporter IUJ48_24335 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IUJ48_24350 PF00929 Exonuclease IUJ48_24355 PF00873 AcrB/AcrD/AcrF family IUJ48_24360 PF13533 Biotin-lipoyl like IUJ48_24365 PF00075 RNase H IUJ48_24370 PF08241 Methyltransferase domain IUJ48_24375 PF00753 Metallo-beta-lactamase superfamily IUJ48_24375 PF16123 Hydroxyacylglutathione hydrolase C-terminus IUJ48_24380 PF01476 LysM domain IUJ48_24380 PF01464 Transglycosylase SLT domain IUJ48_24400 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_24405 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IUJ48_24405 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IUJ48_24420 PF01740 STAS domain IUJ48_24425 PF13581 Histidine kinase-like ATPase domain IUJ48_24430 PF00842 Alanine racemase, C-terminal domain IUJ48_24430 PF01168 Alanine racemase, N-terminal domain IUJ48_24440 PF07228 Stage II sporulation protein E (SpoIIE) IUJ48_24440 PF00672 HAMP domain IUJ48_24455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_24455 PF03466 LysR substrate binding domain IUJ48_24460 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_24470 PF01323 DSBA-like thioredoxin domain IUJ48_24480 PF14552 Tautomerase enzyme IUJ48_24485 PF03466 LysR substrate binding domain IUJ48_24485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_24495 PF04293 SpoVR like protein IUJ48_24500 PF04285 Protein of unknown function (DUF444) IUJ48_24505 PF06798 PrkA serine protein kinase C-terminal domain IUJ48_24505 PF08298 PrkA AAA domain IUJ48_24520 PF01872 RibD C-terminal domain IUJ48_24520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ48_24535 PF03477 ATP cone domain IUJ48_24540 PF00464 Serine hydroxymethyltransferase IUJ48_24545 PF01810 LysE type translocator IUJ48_24555 PF01479 S4 domain IUJ48_24555 PF00579 tRNA synthetases class I (W and Y) IUJ48_24560 PF01476 LysM domain IUJ48_24560 PF01551 Peptidase family M23 IUJ48_24565 PF03702 Anhydro-N-acetylmuramic acid kinase IUJ48_24570 PF01521 Iron-sulphur cluster biosynthesis IUJ48_24580 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ48_24580 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUJ48_24585 PF00380 Ribosomal protein S9/S16 IUJ48_24590 PF00572 Ribosomal protein L13 IUJ48_24595 PF00005 ABC transporter IUJ48_24600 PF00005 ABC transporter IUJ48_24600 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_24605 PF02653 Branched-chain amino acid transport system / permease component IUJ48_24605 PF11862 Domain of unknown function (DUF3382) IUJ48_24615 PF13458 Periplasmic binding protein IUJ48_24620 PF03480 Bacterial extracellular solute-binding protein, family 7 IUJ48_24625 PF01523 Putative modulator of DNA gyrase IUJ48_24630 PF04751 Protein of unknown function (DUF615) IUJ48_24645 PF00005 ABC transporter IUJ48_24650 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_24655 PF00857 Isochorismatase family IUJ48_24660 PF13607 Succinyl-CoA ligase like flavodoxin domain IUJ48_24660 PF13380 CoA binding domain IUJ48_24660 PF00583 Acetyltransferase (GNAT) family IUJ48_24665 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ48_24680 PF03466 LysR substrate binding domain IUJ48_24680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_24690 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_24695 PF01037 Lrp/AsnC ligand binding domain IUJ48_24705 PF03477 ATP cone domain IUJ48_24705 PF00317 Ribonucleotide reductase, all-alpha domain IUJ48_24705 PF02867 Ribonucleotide reductase, barrel domain IUJ48_24710 PF00268 Ribonucleotide reductase, small chain IUJ48_24725 PF13193 AMP-binding enzyme C-terminal domain IUJ48_24725 PF00501 AMP-binding enzyme IUJ48_24730 PF03062 MBOAT, membrane-bound O-acyltransferase family IUJ48_24755 PF00294 pfkB family carbohydrate kinase IUJ48_24755 PF01467 Cytidylyltransferase-like IUJ48_24770 PF00289 Biotin carboxylase, N-terminal domain IUJ48_24770 PF02785 Biotin carboxylase C-terminal domain IUJ48_24770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ48_24775 PF00364 Biotin-requiring enzyme IUJ48_24780 PF01220 Dehydroquinase class II IUJ48_24785 PF08534 Redoxin IUJ48_24790 PF01225 Mur ligase family, catalytic domain IUJ48_24790 PF02875 Mur ligase family, glutamate ligase domain IUJ48_24790 PF08245 Mur ligase middle domain IUJ48_24795 PF05728 Uncharacterised protein family (UPF0227) IUJ48_24800 PF00773 RNB domain IUJ48_24805 PF00486 Transcriptional regulatory protein, C terminal IUJ48_24805 PF00072 Response regulator receiver domain IUJ48_24810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_24810 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_24820 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_24825 PF08402 TOBE domain IUJ48_24825 PF00005 ABC transporter IUJ48_24835 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IUJ48_24835 PF08501 Shikimate dehydrogenase substrate binding domain IUJ48_24835 PF01488 Shikimate / quinate 5-dehydrogenase IUJ48_24840 PF00912 Transglycosylase IUJ48_24850 PF00149 Calcineurin-like phosphoesterase IUJ48_24855 PF00005 ABC transporter IUJ48_24865 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_24870 PF00155 Aminotransferase class I and II IUJ48_24875 PF03737 Aldolase/RraA IUJ48_24885 PF01553 Acyltransferase IUJ48_24890 PF01979 Amidohydrolase family IUJ48_24895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ48_24895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ48_24900 PF03652 Holliday junction resolvase IUJ48_24905 PF02622 Uncharacterized ACR, COG1678 IUJ48_24910 PF00301 Rubredoxin IUJ48_24915 PF08543 Phosphomethylpyrimidine kinase IUJ48_24920 PF02581 Thiamine monophosphate synthase IUJ48_24925 PF00202 Aminotransferase class-III IUJ48_24930 PF01464 Transglycosylase SLT domain IUJ48_24945 PF00857 Isochorismatase family IUJ48_24950 PF00866 Ring hydroxylating beta subunit IUJ48_24955 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IUJ48_24955 PF00355 Rieske [2Fe-2S] domain IUJ48_24960 PF01738 Dienelactone hydrolase family IUJ48_24985 PF13193 AMP-binding enzyme C-terminal domain IUJ48_24985 PF00501 AMP-binding enzyme IUJ48_24990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_24990 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_24990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_24995 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_25005 PF01494 FAD binding domain IUJ48_25010 PF03707 Bacterial signalling protein N terminal repeat IUJ48_25010 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_25010 PF00563 EAL domain IUJ48_25015 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_25020 PF09345 Domain of unknown function (DUF1987) IUJ48_25035 PF00005 ABC transporter IUJ48_25040 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_25040 PF00005 ABC transporter IUJ48_25045 PF02653 Branched-chain amino acid transport system / permease component IUJ48_25045 PF11862 Domain of unknown function (DUF3382) IUJ48_25050 PF02653 Branched-chain amino acid transport system / permease component IUJ48_25070 PF01960 ArgJ family IUJ48_25080 PF00293 NUDIX domain IUJ48_25090 PF00005 ABC transporter IUJ48_25090 PF17912 MalK OB fold domain IUJ48_25095 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_25100 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_25115 PF07969 Amidohydrolase family IUJ48_25120 PF01266 FAD dependent oxidoreductase IUJ48_25125 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_25135 PF00873 AcrB/AcrD/AcrF family IUJ48_25140 PF00873 AcrB/AcrD/AcrF family IUJ48_25145 PF13533 Biotin-lipoyl like IUJ48_25150 PF07072 Cell division protein IUJ48_25155 PF01121 Dephospho-CoA kinase IUJ48_25160 PF06750 Bacterial Peptidase A24 N-terminal domain IUJ48_25160 PF01478 Type IV leader peptidase family IUJ48_25170 PF00196 Bacterial regulatory proteins, luxR family IUJ48_25170 PF00072 Response regulator receiver domain IUJ48_25175 PF02569 Pantoate-beta-alanine ligase IUJ48_25180 PF02616 Segregation and condensation protein ScpA IUJ48_25190 PF07690 Major Facilitator Superfamily IUJ48_25195 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUJ48_25195 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IUJ48_25205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_25205 PF03466 LysR substrate binding domain IUJ48_25210 PF07883 Cupin domain IUJ48_25215 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_25220 PF13417 Glutathione S-transferase, N-terminal domain IUJ48_25225 PF01842 ACT domain IUJ48_25225 PF01817 Chorismate mutase type II IUJ48_25225 PF00800 Prephenate dehydratase IUJ48_25230 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_25240 PF01494 FAD binding domain IUJ48_25250 PF02653 Branched-chain amino acid transport system / permease component IUJ48_25255 PF02653 Branched-chain amino acid transport system / permease component IUJ48_25255 PF11862 Domain of unknown function (DUF3382) IUJ48_25260 PF00005 ABC transporter IUJ48_25265 PF00005 ABC transporter IUJ48_25280 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_25285 PF00005 ABC transporter IUJ48_25290 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_25295 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_25300 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_25305 PF00005 ABC transporter IUJ48_25310 PF18075 FtsX extracellular domain IUJ48_25315 PF03975 CheD chemotactic sensory transduction IUJ48_25320 PF01965 DJ-1/PfpI family IUJ48_25320 PF12833 Helix-turn-helix domain IUJ48_25335 PF14815 NUDIX domain IUJ48_25335 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ48_25335 PF00633 Helix-hairpin-helix motif IUJ48_25335 PF10576 Iron-sulfur binding domain of endonuclease III IUJ48_25345 PF01425 Amidase IUJ48_25350 PF01232 Mannitol dehydrogenase Rossmann domain IUJ48_25350 PF08125 Mannitol dehydrogenase C-terminal domain IUJ48_25355 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IUJ48_25355 PF13378 Enolase C-terminal domain-like IUJ48_25360 PF00005 ABC transporter IUJ48_25365 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_25370 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_25375 PF00107 Zinc-binding dehydrogenase IUJ48_25375 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_25390 PF00392 Bacterial regulatory proteins, gntR family IUJ48_25390 PF07729 FCD domain IUJ48_25395 PF02574 Homocysteine S-methyltransferase IUJ48_25395 PF02310 B12 binding domain IUJ48_25395 PF02607 B12 binding domain IUJ48_25395 PF00809 Pterin binding enzyme IUJ48_25395 PF02965 Vitamin B12 dependent methionine synthase, activation domain IUJ48_25400 PF00593 TonB dependent receptor IUJ48_25400 PF07715 TonB-dependent Receptor Plug Domain IUJ48_25405 PF01497 Periplasmic binding protein IUJ48_25410 PF05690 Thiazole biosynthesis protein ThiG IUJ48_25415 PF08543 Phosphomethylpyrimidine kinase IUJ48_25425 PF02321 Outer membrane efflux protein IUJ48_25430 PF01467 Cytidylyltransferase-like IUJ48_25440 PF03109 ABC1 family IUJ48_25455 PF01209 ubiE/COQ5 methyltransferase family IUJ48_25460 PF00486 Transcriptional regulatory protein, C terminal IUJ48_25460 PF00072 Response regulator receiver domain IUJ48_25465 PF11808 Phosphate regulon sensor protein PhoR IUJ48_25465 PF00989 PAS fold IUJ48_25465 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_25465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_25470 PF00486 Transcriptional regulatory protein, C terminal IUJ48_25470 PF00072 Response regulator receiver domain IUJ48_25475 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_25475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_25475 PF00672 HAMP domain IUJ48_25485 PF07732 Multicopper oxidase IUJ48_25485 PF07731 Multicopper oxidase IUJ48_25485 PF00394 Multicopper oxidase IUJ48_25490 PF05275 Copper resistance protein B precursor (CopB) IUJ48_25500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_25500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_25510 PF03466 LysR substrate binding domain IUJ48_25510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_25520 PF02682 Carboxyltransferase domain, subdomain C and D IUJ48_25525 PF02626 Carboxyltransferase domain, subdomain A and B IUJ48_25530 PF03746 LamB/YcsF family IUJ48_25535 PF00392 Bacterial regulatory proteins, gntR family IUJ48_25535 PF07729 FCD domain IUJ48_25540 PF03458 UPF0126 domain IUJ48_25550 PF07690 Major Facilitator Superfamily IUJ48_25555 PF00561 alpha/beta hydrolase fold IUJ48_25555 PF07021 Methionine biosynthesis protein MetW IUJ48_25560 PF00561 alpha/beta hydrolase fold IUJ48_25565 PF00392 Bacterial regulatory proteins, gntR family IUJ48_25565 PF07702 UTRA domain IUJ48_25570 PF08666 SAF domain IUJ48_25575 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IUJ48_25580 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_25585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_25585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_25590 PF02615 Malate/L-lactate dehydrogenase IUJ48_25615 PF00561 alpha/beta hydrolase fold IUJ48_25620 PF04262 Glutamate-cysteine ligase IUJ48_25630 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IUJ48_25635 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_25640 PF03466 LysR substrate binding domain IUJ48_25640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_25650 PF00392 Bacterial regulatory proteins, gntR family IUJ48_25650 PF07729 FCD domain IUJ48_25655 PF00795 Carbon-nitrogen hydrolase IUJ48_25660 PF00005 ABC transporter IUJ48_25665 PF00005 ABC transporter IUJ48_25670 PF02653 Branched-chain amino acid transport system / permease component IUJ48_25670 PF11862 Domain of unknown function (DUF3382) IUJ48_25675 PF02653 Branched-chain amino acid transport system / permease component IUJ48_25685 PF01557 Fumarylacetoacetate (FAA) hydrolase family IUJ48_25690 PF07883 Cupin domain IUJ48_25700 PF13609 Gram-negative porin IUJ48_25705 PF00753 Metallo-beta-lactamase superfamily IUJ48_25705 PF16123 Hydroxyacylglutathione hydrolase C-terminus IUJ48_25710 PF12680 SnoaL-like domain IUJ48_25710 PF04542 Sigma-70 region 2 IUJ48_25710 PF08281 Sigma-70, region 4 IUJ48_25720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_25720 PF03466 LysR substrate binding domain IUJ48_25725 PF02566 OsmC-like protein IUJ48_25730 PF05368 NmrA-like family IUJ48_25740 PF07690 Major Facilitator Superfamily IUJ48_25750 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_25755 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_25755 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_25755 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain IUJ48_25760 PF02515 CoA-transferase family III IUJ48_25765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_25765 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_25765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_25770 PF00440 Bacterial regulatory proteins, tetR family IUJ48_25775 PF03060 Nitronate monooxygenase IUJ48_25780 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_25785 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_25790 PF01256 Carbohydrate kinase IUJ48_25800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_25805 PF03466 LysR substrate binding domain IUJ48_25805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_25815 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IUJ48_25820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_25825 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_25830 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_25830 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_25835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_25835 PF00005 ABC transporter IUJ48_25840 PF00005 ABC transporter IUJ48_25840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_25850 PF01546 Peptidase family M20/M25/M40 IUJ48_25850 PF07687 Peptidase dimerisation domain IUJ48_25855 PF03976 Polyphosphate kinase 2 (PPK2) IUJ48_25860 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle IUJ48_25860 PF14602 Hexapeptide repeat of succinyl-transferase IUJ48_25865 PF01965 DJ-1/PfpI family IUJ48_25865 PF12833 Helix-turn-helix domain IUJ48_25870 PF00106 short chain dehydrogenase IUJ48_25875 PF01380 SIS domain IUJ48_25880 PF01212 Beta-eliminating lyase IUJ48_25885 PF12833 Helix-turn-helix domain IUJ48_25885 PF12852 Cupin IUJ48_25890 PF00580 UvrD/REP helicase N-terminal domain IUJ48_25890 PF13361 UvrD-like helicase C-terminal domain IUJ48_25895 PF00271 Helicase conserved C-terminal domain IUJ48_25895 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IUJ48_25895 PF18074 Primosomal protein N C-terminal domain IUJ48_25895 PF17764 3′ DNA-binding domain (3′BD) IUJ48_25895 PF00270 DEAD/DEAH box helicase IUJ48_25900 PF01208 Uroporphyrinogen decarboxylase (URO-D) IUJ48_25910 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IUJ48_25915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ48_25915 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ48_25920 PF00231 ATP synthase IUJ48_25925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ48_25925 PF00306 ATP synthase alpha/beta chain, C terminal domain IUJ48_25925 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ48_25930 PF00213 ATP synthase delta (OSCP) subunit IUJ48_25935 PF00430 ATP synthase B/B' CF(0) IUJ48_25940 PF00137 ATP synthase subunit C IUJ48_25945 PF00119 ATP synthase A chain IUJ48_25960 PF00378 Enoyl-CoA hydratase/isomerase IUJ48_25965 PF13180 PDZ domain IUJ48_25970 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_25975 PF01144 Coenzyme A transferase IUJ48_25980 PF01144 Coenzyme A transferase IUJ48_25985 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_25990 PF03466 LysR substrate binding domain IUJ48_25990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_25995 PF17645 Arylmalonate decarboxylase IUJ48_26015 PF07728 AAA domain (dynein-related subfamily) IUJ48_26015 PF08406 CbbQ/NirQ/NorQ C-terminal IUJ48_26020 PF00795 Carbon-nitrogen hydrolase IUJ48_26025 PF00005 ABC transporter IUJ48_26030 PF00005 ABC transporter IUJ48_26030 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_26035 PF02653 Branched-chain amino acid transport system / permease component IUJ48_26040 PF02653 Branched-chain amino acid transport system / permease component IUJ48_26050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_26050 PF03466 LysR substrate binding domain IUJ48_26060 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_26070 PF01171 PP-loop family IUJ48_26075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_26075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ48_26075 PF01842 ACT domain IUJ48_26080 PF13098 Thioredoxin-like domain IUJ48_26080 PF10411 Disulfide bond isomerase protein N-terminus IUJ48_26085 PF01494 FAD binding domain IUJ48_26095 PF04379 ApaG domain IUJ48_26100 PF00834 Ribulose-phosphate 3 epimerase family IUJ48_26105 PF13419 Haloacid dehalogenase-like hydrolase IUJ48_26110 PF00425 chorismate binding enzyme IUJ48_26110 PF04715 Anthranilate synthase component I, N terminal region IUJ48_26115 PF00117 Glutamine amidotransferase class-I IUJ48_26120 PF02885 Glycosyl transferase family, helical bundle domain IUJ48_26120 PF00591 Glycosyl transferase family, a/b domain IUJ48_26125 PF00218 Indole-3-glycerol phosphate synthase IUJ48_26130 PF02954 Bacterial regulatory protein, Fis family IUJ48_26130 PF00158 Sigma-54 interaction domain IUJ48_26130 PF01590 GAF domain IUJ48_26135 PF00171 Aldehyde dehydrogenase family IUJ48_26150 PF01323 DSBA-like thioredoxin domain IUJ48_26160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_26160 PF03466 LysR substrate binding domain IUJ48_26170 PF00586 AIR synthase related protein, N-terminal domain IUJ48_26170 PF02769 AIR synthase related protein, C-terminal domain IUJ48_26175 PF01841 Transglutaminase-like superfamily IUJ48_26180 PF00578 AhpC/TSA family IUJ48_26185 PF00535 Glycosyl transferase family 2 IUJ48_26195 PF09107 Elongation factor SelB, winged helix IUJ48_26195 PF00009 Elongation factor Tu GTP binding domain IUJ48_26195 PF03144 Elongation factor Tu domain 2 IUJ48_26195 PF09106 Elongation factor SelB, winged helix IUJ48_26200 PF03841 L-seryl-tRNA selenium transferase IUJ48_26200 PF12390 Selenocysteine synthase N terminal IUJ48_26205 PF04216 Protein involved in formate dehydrogenase formation IUJ48_26210 PF01292 Prokaryotic cytochrome b561 IUJ48_26215 PF13247 4Fe-4S dicluster domain IUJ48_26215 PF12800 4Fe-4S binding domain IUJ48_26215 PF09163 Formate dehydrogenase N, transmembrane IUJ48_26230 PF03061 Thioesterase superfamily IUJ48_26255 PF11737 Protein of unknown function (DUF3300) IUJ48_26260 PF03459 TOBE domain IUJ48_26265 PF00005 ABC transporter IUJ48_26270 PF03180 NLPA lipoprotein IUJ48_26275 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_26280 PF00005 ABC transporter IUJ48_26280 PF09383 NIL domain IUJ48_26285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_26285 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_26290 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_26295 PF00296 Luciferase-like monooxygenase IUJ48_26300 PF09084 NMT1/THI5 like IUJ48_26305 PF03358 NADPH-dependent FMN reductase IUJ48_26310 PF03180 NLPA lipoprotein IUJ48_26315 PF00296 Luciferase-like monooxygenase IUJ48_26320 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_26320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_26325 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_26325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_26335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_26340 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_26345 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_26345 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_26350 PF00005 ABC transporter IUJ48_26350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_26355 PF00582 Universal stress protein family IUJ48_26360 PF00970 Oxidoreductase FAD-binding domain IUJ48_26360 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ48_26360 PF00175 Oxidoreductase NAD-binding domain IUJ48_26370 PF00171 Aldehyde dehydrogenase family IUJ48_26385 PF00392 Bacterial regulatory proteins, gntR family IUJ48_26385 PF07729 FCD domain IUJ48_26445 PF13953 PapC C-terminal domain IUJ48_26445 PF13954 PapC N-terminal domain IUJ48_26445 PF00577 Outer membrane usher protein IUJ48_26460 PF07690 Major Facilitator Superfamily IUJ48_26465 PF00672 HAMP domain IUJ48_26465 PF02203 Tar ligand binding domain homologue IUJ48_26465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ48_26470 PF01979 Amidohydrolase family IUJ48_26475 PF00221 Aromatic amino acid lyase IUJ48_26480 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IUJ48_26485 PF01175 Urocanase Rossmann-like domain IUJ48_26485 PF17392 Urocanase C-terminal domain IUJ48_26485 PF17391 Urocanase N-terminal domain IUJ48_26490 PF05962 HutD IUJ48_26495 PF00392 Bacterial regulatory proteins, gntR family IUJ48_26495 PF07702 UTRA domain IUJ48_26500 PF02583 Metal-sensitive transcriptional repressor IUJ48_26505 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_26505 PF00107 Zinc-binding dehydrogenase IUJ48_26510 PF02872 5'-nucleotidase, C-terminal domain IUJ48_26510 PF00149 Calcineurin-like phosphoesterase IUJ48_26530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_26530 PF00672 HAMP domain IUJ48_26530 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_26535 PF00486 Transcriptional regulatory protein, C terminal IUJ48_26535 PF00072 Response regulator receiver domain IUJ48_26545 PF02321 Outer membrane efflux protein IUJ48_26550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ48_26550 PF00529 HlyD membrane-fusion protein of T1SS IUJ48_26555 PF00873 AcrB/AcrD/AcrF family IUJ48_26560 PF00535 Glycosyl transferase family 2 IUJ48_26565 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IUJ48_26570 PF00491 Arginase family IUJ48_26575 PF00474 Sodium:solute symporter family IUJ48_26580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_26580 PF03466 LysR substrate binding domain IUJ48_26585 PF02548 Ketopantoate hydroxymethyltransferase IUJ48_26590 PF01926 50S ribosome-binding GTPase IUJ48_26595 PF02423 Ornithine cyclodeaminase/mu-crystallin family IUJ48_26600 PF00795 Carbon-nitrogen hydrolase IUJ48_26605 PF03466 LysR substrate binding domain IUJ48_26605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_26610 PF07690 Major Facilitator Superfamily IUJ48_26615 PF02445 Quinolinate synthetase A protein IUJ48_26620 PF00890 FAD binding domain IUJ48_26620 PF02910 Fumarate reductase flavoprotein C-term IUJ48_26625 PF05643 Putative bacterial lipoprotein (DUF799) IUJ48_26635 PF03783 Curli production assembly/transport component CsgG IUJ48_26645 PF17284 Spermidine synthase tetramerisation domain IUJ48_26660 PF00296 Luciferase-like monooxygenase IUJ48_26665 PF00005 ABC transporter IUJ48_26670 PF01032 FecCD transport family IUJ48_26675 PF01032 FecCD transport family IUJ48_26680 PF01497 Periplasmic binding protein IUJ48_26685 PF00593 TonB dependent receptor IUJ48_26685 PF07715 TonB-dependent Receptor Plug Domain IUJ48_26690 PF14525 AraC-binding-like domain IUJ48_26690 PF12833 Helix-turn-helix domain IUJ48_26700 PF07690 Major Facilitator Superfamily IUJ48_26710 PF04072 Leucine carboxyl methyltransferase IUJ48_26715 PF00107 Zinc-binding dehydrogenase IUJ48_26715 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_26720 PF01380 SIS domain IUJ48_26730 PF13439 Glycosyltransferase Family 4 IUJ48_26730 PF00534 Glycosyl transferases group 1 IUJ48_26735 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IUJ48_26735 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IUJ48_26735 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IUJ48_26740 PF07690 Major Facilitator Superfamily IUJ48_26745 PF12804 MobA-like NTP transferase domain IUJ48_26745 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_26745 PF14602 Hexapeptide repeat of succinyl-transferase IUJ48_26765 PF02630 SCO1/SenC IUJ48_26770 PF01040 UbiA prenyltransferase family IUJ48_26775 PF02628 Cytochrome oxidase assembly protein IUJ48_26795 PF00510 Cytochrome c oxidase subunit III IUJ48_26805 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ48_26810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IUJ48_26810 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IUJ48_26820 PF00999 Sodium/hydrogen exchanger family IUJ48_26825 PF00149 Calcineurin-like phosphoesterase IUJ48_26830 PF04542 Sigma-70 region 2 IUJ48_26830 PF04545 Sigma-70, region 4 IUJ48_26830 PF00140 Sigma-70 factor, region 1.2 IUJ48_26840 PF00756 Putative esterase IUJ48_26850 PF04898 Glutamate synthase central domain IUJ48_26850 PF01645 Conserved region in glutamate synthase IUJ48_26850 PF00310 Glutamine amidotransferases class-II IUJ48_26850 PF01493 GXGXG motif IUJ48_26855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IUJ48_26855 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_26865 PF02626 Carboxyltransferase domain, subdomain A and B IUJ48_26875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ48_26875 PF00289 Biotin carboxylase, N-terminal domain IUJ48_26875 PF02785 Biotin carboxylase C-terminal domain IUJ48_26880 PF00364 Biotin-requiring enzyme IUJ48_26885 PF03746 LamB/YcsF family IUJ48_26890 PF03466 LysR substrate binding domain IUJ48_26890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_26895 PF03922 OmpW family IUJ48_26900 PF03466 LysR substrate binding domain IUJ48_26900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_26905 PF06779 Uncharacterised MFS-type transporter YbfB IUJ48_26910 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_26915 PF03060 Nitronate monooxygenase IUJ48_26920 PF00005 ABC transporter IUJ48_26925 PF02405 Permease MlaE IUJ48_26930 PF02470 MlaD protein IUJ48_26935 PF04333 MlaA lipoprotein IUJ48_26945 PF00005 ABC transporter IUJ48_26950 PF01061 ABC-2 type transporter IUJ48_26960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUJ48_26965 PF01634 ATP phosphoribosyltransferase IUJ48_26970 PF00815 Histidinol dehydrogenase IUJ48_26975 PF00155 Aminotransferase class I and II IUJ48_26980 PF00475 Imidazoleglycerol-phosphate dehydratase IUJ48_26985 PF00117 Glutamine amidotransferase class-I IUJ48_26990 PF00977 Histidine biosynthesis protein IUJ48_26995 PF00977 Histidine biosynthesis protein IUJ48_27000 PF01502 Phosphoribosyl-AMP cyclohydrolase IUJ48_27005 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IUJ48_27010 PF01230 HIT domain IUJ48_27015 PF02416 mttA/Hcf106 family IUJ48_27025 PF00902 Sec-independent protein translocase protein (TatC) IUJ48_27035 PF00595 PDZ domain IUJ48_27040 PF01784 NIF3 (NGG1p interacting factor 3) IUJ48_27045 PF01741 Large-conductance mechanosensitive channel, MscL IUJ48_27050 PF00355 Rieske [2Fe-2S] domain IUJ48_27050 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IUJ48_27055 PF00032 Cytochrome b(C-terminal)/b6/petD IUJ48_27055 PF00033 Cytochrome b/b6/petB IUJ48_27060 PF02167 Cytochrome C1 family IUJ48_27065 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_27065 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_27070 PF04386 Stringent starvation protein B IUJ48_27085 PF02447 GntP family permease IUJ48_27100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_27100 PF03466 LysR substrate binding domain IUJ48_27110 PF00266 Aminotransferase class-V IUJ48_27120 PF06445 GyrI-like small molecule binding domain IUJ48_27120 PF12833 Helix-turn-helix domain IUJ48_27125 PF11067 Protein of unknown function (DUF2868) IUJ48_27130 PF00009 Elongation factor Tu GTP binding domain IUJ48_27130 PF08364 Bacterial translation initiation factor IF-2 associated region IUJ48_27130 PF11987 Translation-initiation factor 2 IUJ48_27130 PF04760 Translation initiation factor IF-2, N-terminal region IUJ48_27135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_27140 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27145 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_27145 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_27150 PF00005 ABC transporter IUJ48_27155 PF01979 Amidohydrolase family IUJ48_27160 PF06097 Bacterial protein of unknown function (DUF945) IUJ48_27165 PF06097 Bacterial protein of unknown function (DUF945) IUJ48_27170 PF00271 Helicase conserved C-terminal domain IUJ48_27170 PF00270 DEAD/DEAH box helicase IUJ48_27175 PF01810 LysE type translocator IUJ48_27180 PF16658 Class II release factor RF3, C-terminal domain IUJ48_27180 PF03144 Elongation factor Tu domain 2 IUJ48_27180 PF00009 Elongation factor Tu GTP binding domain IUJ48_27190 PF00210 Ferritin-like domain IUJ48_27200 PF03466 LysR substrate binding domain IUJ48_27200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_27220 PF00309 Sigma-54 factor, Activator interacting domain (AID) IUJ48_27220 PF04963 Sigma-54 factor, core binding domain IUJ48_27220 PF04552 Sigma-54, DNA binding domain IUJ48_27230 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_27235 PF08502 LeuA allosteric (dimerisation) domain IUJ48_27235 PF00682 HMGL-like IUJ48_27245 PF00356 Bacterial regulatory proteins, lacI family IUJ48_27250 PF00149 Calcineurin-like phosphoesterase IUJ48_27255 PF00005 ABC transporter IUJ48_27255 PF08402 TOBE domain IUJ48_27260 PF13416 Bacterial extracellular solute-binding protein IUJ48_27265 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27270 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27285 PF05746 DALR anticodon binding domain IUJ48_27285 PF00750 tRNA synthetases class I (R) IUJ48_27285 PF03485 Arginyl tRNA synthetase N terminal domain IUJ48_27295 PF01323 DSBA-like thioredoxin domain IUJ48_27295 PF00085 Thioredoxin IUJ48_27305 PF00561 alpha/beta hydrolase fold IUJ48_27310 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_27320 PF01810 LysE type translocator IUJ48_27330 PF00376 MerR family regulatory protein IUJ48_27330 PF09278 MerR, DNA binding IUJ48_27335 PF02694 Uncharacterised BCR, YnfA/UPF0060 family IUJ48_27340 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_27345 PF07687 Peptidase dimerisation domain IUJ48_27345 PF01546 Peptidase family M20/M25/M40 IUJ48_27350 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_27350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_27350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_27355 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) IUJ48_27360 PF02803 Thiolase, C-terminal domain IUJ48_27360 PF00108 Thiolase, N-terminal domain IUJ48_27365 PF01039 Carboxyl transferase domain IUJ48_27370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ48_27370 PF00364 Biotin-requiring enzyme IUJ48_27370 PF00289 Biotin carboxylase, N-terminal domain IUJ48_27370 PF02785 Biotin carboxylase C-terminal domain IUJ48_27385 PF05977 Transmembrane secretion effector IUJ48_27420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ48_27420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ48_27420 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ48_27430 PF13193 AMP-binding enzyme C-terminal domain IUJ48_27430 PF00501 AMP-binding enzyme IUJ48_27435 PF08281 Sigma-70, region 4 IUJ48_27435 PF04542 Sigma-70 region 2 IUJ48_27445 PF07660 Secretin and TonB N terminus short domain IUJ48_27445 PF00593 TonB dependent receptor IUJ48_27445 PF07715 TonB-dependent Receptor Plug Domain IUJ48_27450 PF07690 Major Facilitator Superfamily IUJ48_27455 PF00392 Bacterial regulatory proteins, gntR family IUJ48_27455 PF07729 FCD domain IUJ48_27475 PF01810 LysE type translocator IUJ48_27485 PF06803 Protein of unknown function (DUF1232) IUJ48_27495 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system IUJ48_27505 PF12823 Domain of unknown function (DUF3817) IUJ48_27510 PF01965 DJ-1/PfpI family IUJ48_27530 PF00202 Aminotransferase class-III IUJ48_27535 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_27540 PF07411 Domain of unknown function (DUF1508) IUJ48_27545 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_27550 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27555 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27560 PF00005 ABC transporter IUJ48_27570 PF14031 Putative serine dehydratase domain IUJ48_27570 PF01168 Alanine racemase, N-terminal domain IUJ48_27575 PF16868 NMT1-like family IUJ48_27585 PF04361 Protein of unknown function (DUF494) IUJ48_27590 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ48_27600 PF01131 DNA topoisomerase IUJ48_27600 PF01751 Toprim domain IUJ48_27610 PF00005 ABC transporter IUJ48_27615 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27625 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ48_27625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ48_27625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ48_27630 PF01037 Lrp/AsnC ligand binding domain IUJ48_27635 PF01062 Bestrophin, RFP-TM, chloride channel IUJ48_27645 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IUJ48_27650 PF07690 Major Facilitator Superfamily IUJ48_27655 PF00440 Bacterial regulatory proteins, tetR family IUJ48_27665 PF01613 Flavin reductase like domain IUJ48_27680 PF02558 Ketopantoate reductase PanE/ApbA IUJ48_27680 PF08546 Ketopantoate reductase PanE/ApbA C terminal IUJ48_27690 PF02608 ABC transporter substrate-binding protein PnrA-like IUJ48_27695 PF00005 ABC transporter IUJ48_27700 PF02653 Branched-chain amino acid transport system / permease component IUJ48_27710 PF07969 Amidohydrolase family IUJ48_27715 PF01042 Endoribonuclease L-PSP IUJ48_27725 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_27725 PF04324 BFD-like [2Fe-2S] binding domain IUJ48_27735 PF01266 FAD dependent oxidoreductase IUJ48_27740 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27745 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27750 PF00005 ABC transporter IUJ48_27750 PF08402 TOBE domain IUJ48_27760 PF00392 Bacterial regulatory proteins, gntR family IUJ48_27770 PF05378 Hydantoinase/oxoprolinase N-terminal region IUJ48_27770 PF01968 Hydantoinase/oxoprolinase IUJ48_27775 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_27780 PF03466 LysR substrate binding domain IUJ48_27780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_27790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ48_27805 PF04324 BFD-like [2Fe-2S] binding domain IUJ48_27805 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_27815 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27820 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27825 PF08402 TOBE domain IUJ48_27825 PF00005 ABC transporter IUJ48_27835 PF01070 FMN-dependent dehydrogenase IUJ48_27845 PF00708 Acylphosphatase IUJ48_27850 PF00892 EamA-like transporter family IUJ48_27855 PF01212 Beta-eliminating lyase IUJ48_27860 PF00005 ABC transporter IUJ48_27865 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27870 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_27875 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_27880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_27880 PF03466 LysR substrate binding domain IUJ48_27890 PF07969 Amidohydrolase family IUJ48_27900 PF02678 Pirin IUJ48_27900 PF17954 Quercetinase C-terminal cupin domain IUJ48_27905 PF07690 Major Facilitator Superfamily IUJ48_27915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_27915 PF03466 LysR substrate binding domain IUJ48_27920 PF03466 LysR substrate binding domain IUJ48_27920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_27925 PF07690 Major Facilitator Superfamily IUJ48_27930 PF00986 DNA gyrase B subunit, carboxyl terminus IUJ48_27930 PF00204 DNA gyrase B IUJ48_27930 PF18053 DNA gyrase B subunit insert domain IUJ48_27930 PF01751 Toprim domain IUJ48_27930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_27935 PF00712 DNA polymerase III beta subunit, N-terminal domain IUJ48_27935 PF02767 DNA polymerase III beta subunit, central domain IUJ48_27935 PF02768 DNA polymerase III beta subunit, C-terminal domain IUJ48_27940 PF08299 Bacterial dnaA protein helix-turn-helix IUJ48_27940 PF00308 Bacterial dnaA protein IUJ48_27940 PF11638 DnaA N-terminal domain IUJ48_27945 PF00468 Ribosomal protein L34 IUJ48_27950 PF00825 Ribonuclease P IUJ48_27955 PF01809 Putative membrane protein insertion efficiency factor IUJ48_27960 PF02096 60Kd inner membrane protein IUJ48_27960 PF14849 YidC periplasmic domain IUJ48_27965 PF00199 Catalase IUJ48_27965 PF06628 Catalase-related immune-responsive IUJ48_27970 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_27980 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IUJ48_27985 PF01546 Peptidase family M20/M25/M40 IUJ48_27985 PF07687 Peptidase dimerisation domain IUJ48_27990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_27990 PF00005 ABC transporter IUJ48_27995 PF00005 ABC transporter IUJ48_27995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ48_28000 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_28000 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ48_28005 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_28010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ48_28015 PF10396 GTP-binding protein TrmE N-terminus IUJ48_28015 PF12631 MnmE helical domain IUJ48_28015 PF01926 50S ribosome-binding GTPase IUJ48_28030 PF00654 Voltage gated chloride channel IUJ48_28035 PF00486 Transcriptional regulatory protein, C terminal IUJ48_28035 PF00072 Response regulator receiver domain IUJ48_28040 PF00672 HAMP domain IUJ48_28040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_28040 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_28055 PF01970 Tripartite tricarboxylate transporter TctA family IUJ48_28060 PF00155 Aminotransferase class I and II IUJ48_28065 PF05145 Transition state regulatory protein AbrB IUJ48_28070 PF00313 'Cold-shock' DNA-binding domain IUJ48_28075 PF13932 GidA associated domain IUJ48_28075 PF01134 Glucose inhibited division protein A IUJ48_28080 PF02527 rRNA small subunit methyltransferase G IUJ48_28085 PF13614 AAA domain IUJ48_28095 PF02195 ParB-like nuclease domain IUJ48_28095 PF17762 HTH domain found in ParB protein IUJ48_28100 PF17763 Glutaminase/Asparaginase C-terminal domain IUJ48_28100 PF00710 Asparaginase, N-terminal IUJ48_28105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_28105 PF03466 LysR substrate binding domain IUJ48_28115 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_28125 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_28130 PF00455 DeoR C terminal sensor domain IUJ48_28130 PF08220 DeoR-like helix-turn-helix domain IUJ48_28140 PF08402 TOBE domain IUJ48_28140 PF00005 ABC transporter IUJ48_28150 PF00459 Inositol monophosphatase family IUJ48_28155 PF00120 Glutamine synthetase, catalytic domain IUJ48_28160 PF00171 Aldehyde dehydrogenase family IUJ48_28165 PF00465 Iron-containing alcohol dehydrogenase IUJ48_28185 PF00009 Elongation factor Tu GTP binding domain IUJ48_28185 PF03143 Elongation factor Tu C-terminal domain IUJ48_28185 PF03144 Elongation factor Tu domain 2 IUJ48_28195 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IUJ48_28200 PF00467 KOW motif IUJ48_28200 PF02357 Transcription termination factor nusG IUJ48_28205 PF03946 Ribosomal protein L11, N-terminal domain IUJ48_28205 PF00298 Ribosomal protein L11, RNA binding domain IUJ48_28210 PF00687 Ribosomal protein L1p/L10e family IUJ48_28215 PF00466 Ribosomal protein L10 IUJ48_28220 PF00542 Ribosomal protein L7/L12 C-terminal domain IUJ48_28220 PF16320 Ribosomal protein L7/L12 dimerisation domain IUJ48_28225 PF04563 RNA polymerase beta subunit IUJ48_28225 PF04561 RNA polymerase Rpb2, domain 2 IUJ48_28225 PF04565 RNA polymerase Rpb2, domain 3 IUJ48_28225 PF10385 RNA polymerase beta subunit external 1 domain IUJ48_28225 PF00562 RNA polymerase Rpb2, domain 6 IUJ48_28225 PF04560 RNA polymerase Rpb2, domain 7 IUJ48_28230 PF04998 RNA polymerase Rpb1, domain 5 IUJ48_28230 PF04983 RNA polymerase Rpb1, domain 3 IUJ48_28230 PF05000 RNA polymerase Rpb1, domain 4 IUJ48_28230 PF00623 RNA polymerase Rpb1, domain 2 IUJ48_28230 PF04997 RNA polymerase Rpb1, domain 1 IUJ48_28245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_28245 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_28245 PF00989 PAS fold IUJ48_28245 PF16736 Single Cache-like IUJ48_28255 PF00072 Response regulator receiver domain IUJ48_28255 PF00486 Transcriptional regulatory protein, C terminal IUJ48_28260 PF00072 Response regulator receiver domain IUJ48_28260 PF00486 Transcriptional regulatory protein, C terminal IUJ48_28265 PF00164 Ribosomal protein S12/S23 IUJ48_28270 PF00177 Ribosomal protein S7p/S5e IUJ48_28275 PF14492 Elongation Factor G, domain II IUJ48_28275 PF00009 Elongation factor Tu GTP binding domain IUJ48_28275 PF03144 Elongation factor Tu domain 2 IUJ48_28275 PF00679 Elongation factor G C-terminus IUJ48_28275 PF03764 Elongation factor G, domain IV IUJ48_28280 PF00009 Elongation factor Tu GTP binding domain IUJ48_28280 PF03144 Elongation factor Tu domain 2 IUJ48_28280 PF03143 Elongation factor Tu C-terminal domain IUJ48_28285 PF00338 Ribosomal protein S10p/S20e IUJ48_28290 PF00297 Ribosomal protein L3 IUJ48_28295 PF00573 Ribosomal protein L4/L1 family IUJ48_28300 PF00276 Ribosomal protein L23 IUJ48_28305 PF03947 Ribosomal Proteins L2, C-terminal domain IUJ48_28305 PF00181 Ribosomal Proteins L2, RNA binding domain IUJ48_28310 PF00203 Ribosomal protein S19 IUJ48_28315 PF00237 Ribosomal protein L22p/L17e IUJ48_28320 PF00189 Ribosomal protein S3, C-terminal domain IUJ48_28320 PF07650 KH domain IUJ48_28325 PF00252 Ribosomal protein L16p/L10e IUJ48_28330 PF00831 Ribosomal L29 protein IUJ48_28335 PF00366 Ribosomal protein S17 IUJ48_28360 PF00005 ABC transporter IUJ48_28365 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_28365 PF00005 ABC transporter IUJ48_28375 PF00561 alpha/beta hydrolase fold IUJ48_28385 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ48_28390 PF12833 Helix-turn-helix domain IUJ48_28390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ48_28390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ48_28390 PF02805 Metal binding domain of Ada IUJ48_28395 PF00171 Aldehyde dehydrogenase family IUJ48_28405 PF00238 Ribosomal protein L14p/L23e IUJ48_28410 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IUJ48_28415 PF00281 Ribosomal protein L5 IUJ48_28415 PF00673 ribosomal L5P family C-terminus IUJ48_28420 PF00253 Ribosomal protein S14p/S29e IUJ48_28425 PF00410 Ribosomal protein S8 IUJ48_28430 PF00347 Ribosomal protein L6 IUJ48_28435 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IUJ48_28440 PF00333 Ribosomal protein S5, N-terminal domain IUJ48_28440 PF03719 Ribosomal protein S5, C-terminal domain IUJ48_28445 PF00327 Ribosomal protein L30p/L7e IUJ48_28450 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IUJ48_28455 PF00344 SecY translocase IUJ48_28460 PF01176 Translation initiation factor 1A / IF-1 IUJ48_28465 PF00444 Ribosomal protein L36 IUJ48_28470 PF00416 Ribosomal protein S13/S18 IUJ48_28475 PF00411 Ribosomal protein S11 IUJ48_28480 PF00163 Ribosomal protein S4/S9 N-terminal domain IUJ48_28480 PF01479 S4 domain IUJ48_28485 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IUJ48_28485 PF01000 RNA polymerase Rpb3/RpoA insert domain IUJ48_28485 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IUJ48_28490 PF01196 Ribosomal protein L17 IUJ48_28495 PF01230 HIT domain IUJ48_28500 PF03091 CutA1 divalent ion tolerance protein IUJ48_28505 PF02683 Cytochrome C biogenesis protein transmembrane region IUJ48_28505 PF11412 Disulphide bond corrector protein DsbC IUJ48_28515 PF00490 Delta-aminolevulinic acid dehydratase IUJ48_28520 PF01926 50S ribosome-binding GTPase IUJ48_28530 PF05140 ResB-like family IUJ48_28535 PF01578 Cytochrome C assembly protein IUJ48_28540 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IUJ48_28540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ48_28550 PF01491 Frataxin-like domain IUJ48_28555 PF17092 Penicillin-binding protein OB-like domain IUJ48_28555 PF00912 Transglycosylase IUJ48_28555 PF00905 Penicillin binding protein transpeptidase domain IUJ48_28560 PF01202 Shikimate kinase IUJ48_28565 PF01761 3-dehydroquinate synthase IUJ48_28570 PF01966 HD domain IUJ48_28570 PF13286 Phosphohydrolase-associated domain IUJ48_28575 PF14497 Glutathione S-transferase, C-terminal domain IUJ48_28575 PF02798 Glutathione S-transferase, N-terminal domain IUJ48_28580 PF17760 UvrA interaction domain IUJ48_28580 PF17755 UvrA DNA-binding domain IUJ48_28585 PF07690 Major Facilitator Superfamily IUJ48_28590 PF00436 Single-strand binding protein family IUJ48_28630 PF01274 Malate synthase IUJ48_28635 PF07729 FCD domain IUJ48_28635 PF00392 Bacterial regulatory proteins, gntR family IUJ48_28650 PF06476 Protein of unknown function (DUF1090) IUJ48_28655 PF01040 UbiA prenyltransferase family IUJ48_28660 PF00155 Aminotransferase class I and II IUJ48_28665 PF13185 GAF domain IUJ48_28670 PF00701 Dihydrodipicolinate synthetase family IUJ48_28685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUJ48_28685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUJ48_28710 PF02938 GAD domain IUJ48_28710 PF00152 tRNA synthetases class II (D, K and N) IUJ48_28710 PF01336 OB-fold nucleic acid binding domain IUJ48_28715 PF03372 Endonuclease/Exonuclease/phosphatase family IUJ48_28720 PF13091 PLD-like domain IUJ48_28725 PF16363 GDP-mannose 4,6 dehydratase IUJ48_28730 PF00483 Nucleotidyl transferase IUJ48_28735 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase IUJ48_28740 PF00892 EamA-like transporter family IUJ48_28745 PF07690 Major Facilitator Superfamily IUJ48_28755 PF01370 NAD dependent epimerase/dehydratase family IUJ48_28760 PF00733 Asparagine synthase IUJ48_28760 PF13537 Glutamine amidotransferase domain IUJ48_28770 PF00005 ABC transporter IUJ48_28770 PF14524 Wzt C-terminal domain IUJ48_28775 PF01209 ubiE/COQ5 methyltransferase family IUJ48_28805 PF01507 Phosphoadenosine phosphosulfate reductase family IUJ48_28810 PF00009 Elongation factor Tu GTP binding domain IUJ48_28820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IUJ48_28830 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IUJ48_28835 PF13439 Glycosyltransferase Family 4 IUJ48_28835 PF00534 Glycosyl transferases group 1 IUJ48_28840 PF01370 NAD dependent epimerase/dehydratase family IUJ48_28855 PF13537 Glutamine amidotransferase domain IUJ48_28855 PF00733 Asparagine synthase IUJ48_28865 PF02719 Polysaccharide biosynthesis protein IUJ48_28880 PF00534 Glycosyl transferases group 1 IUJ48_28885 PF02397 Bacterial sugar transferase IUJ48_28890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IUJ48_28900 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IUJ48_28905 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ48_28915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IUJ48_28920 PF00534 Glycosyl transferases group 1 IUJ48_28920 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IUJ48_28930 PF03309 Type III pantothenate kinase IUJ48_28940 PF02405 Permease MlaE IUJ48_28945 PF00005 ABC transporter IUJ48_28965 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ48_28965 PF07943 Penicillin-binding protein 5, C-terminal domain IUJ48_28970 PF01063 Amino-transferase class IV IUJ48_28975 PF04359 Protein of unknown function (DUF493) IUJ48_28980 PF03099 Biotin/lipoate A/B protein ligase family IUJ48_28995 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IUJ48_28995 PF04055 Radical SAM superfamily IUJ48_29000 PF01923 Cobalamin adenosyltransferase IUJ48_29010 PF00004 ATPase family associated with various cellular activities (AAA) IUJ48_29010 PF07724 AAA domain (Cdc48 subfamily) IUJ48_29015 PF00227 Proteasome subunit IUJ48_29020 PF01258 Prokaryotic dksA/traR C4-type zinc finger IUJ48_29025 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUJ48_29025 PF07683 Cobalamin synthesis protein cobW C-terminal domain IUJ48_29030 PF01475 Ferric uptake regulator family IUJ48_29035 PF00005 ABC transporter IUJ48_29040 PF00950 ABC 3 transport family IUJ48_29045 PF01297 Zinc-uptake complex component A periplasmic IUJ48_29055 PF03824 High-affinity nickel-transport protein IUJ48_29060 PF02899 Phage integrase, N-terminal SAM-like domain IUJ48_29060 PF00589 Phage integrase family IUJ48_29070 PF01678 Diaminopimelate epimerase IUJ48_29085 PF02773 S-adenosylmethionine synthetase, C-terminal domain IUJ48_29085 PF02772 S-adenosylmethionine synthetase, central domain IUJ48_29085 PF00438 S-adenosylmethionine synthetase, N-terminal domain IUJ48_29090 PF01425 Amidase IUJ48_29095 PF00083 Sugar (and other) transporter IUJ48_29105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_29105 PF03466 LysR substrate binding domain IUJ48_29110 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_29115 PF00330 Aconitase family (aconitate hydratase) IUJ48_29120 PF00694 Aconitase C-terminal domain IUJ48_29125 PF00561 alpha/beta hydrolase fold IUJ48_29135 PF13439 Glycosyltransferase Family 4 IUJ48_29135 PF00534 Glycosyl transferases group 1 IUJ48_29140 PF05221 S-adenosyl-L-homocysteine hydrolase IUJ48_29140 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IUJ48_29145 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV IUJ48_29150 PF02219 Methylenetetrahydrofolate reductase IUJ48_29155 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_29165 PF01841 Transglutaminase-like superfamily IUJ48_29165 PF08379 Bacterial transglutaminase-like N-terminal region IUJ48_29175 PF14403 Circularly permuted ATP-grasp type 2 IUJ48_29180 PF01812 5-formyltetrahydrofolate cyclo-ligase family IUJ48_29185 PF01464 Transglycosylase SLT domain IUJ48_29185 PF14718 Soluble lytic murein transglycosylase L domain IUJ48_29190 PF12627 Probable RNA and SrmB- binding site of polymerase A IUJ48_29190 PF01743 Poly A polymerase head domain IUJ48_29200 PF00270 DEAD/DEAH box helicase IUJ48_29200 PF00271 Helicase conserved C-terminal domain IUJ48_29205 PF03167 Uracil DNA glycosylase superfamily IUJ48_29210 PF08479 POTRA domain, ShlB-type IUJ48_29210 PF17287 POTRA domain IUJ48_29210 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IUJ48_29275 PF00012 Hsp70 protein IUJ48_29285 PF08543 Phosphomethylpyrimidine kinase IUJ48_29285 PF03070 TENA/THI-4/PQQC family IUJ48_29285 PF02581 Thiamine monophosphate synthase IUJ48_29295 PF01520 N-acetylmuramoyl-L-alanine amidase IUJ48_29310 PF04343 Protein of unknown function, DUF488 IUJ48_29315 PF06965 Na+/H+ antiporter 1 IUJ48_29330 PF03976 Polyphosphate kinase 2 (PPK2) IUJ48_29335 PF00753 Metallo-beta-lactamase superfamily IUJ48_29345 PF04143 Sulphur transport IUJ48_29360 PF00501 AMP-binding enzyme IUJ48_29360 PF14535 AMP-binding enzyme C-terminal domain IUJ48_29365 PF00005 ABC transporter IUJ48_29380 PF02653 Branched-chain amino acid transport system / permease component IUJ48_29385 PF00005 ABC transporter IUJ48_29385 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_29390 PF00501 AMP-binding enzyme IUJ48_29400 PF01047 MarR family IUJ48_29405 PF02566 OsmC-like protein IUJ48_29410 PF00005 ABC transporter IUJ48_29415 PF00005 ABC transporter IUJ48_29415 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_29425 PF13458 Periplasmic binding protein IUJ48_29430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_29430 PF03466 LysR substrate binding domain IUJ48_29435 PF01810 LysE type translocator IUJ48_29440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_29440 PF03466 LysR substrate binding domain IUJ48_29450 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IUJ48_29450 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IUJ48_29455 PF03372 Endonuclease/Exonuclease/phosphatase family IUJ48_29460 PF00156 Phosphoribosyl transferase domain IUJ48_29475 PF02934 GatB/GatE catalytic domain IUJ48_29475 PF02637 GatB domain IUJ48_29480 PF01425 Amidase IUJ48_29485 PF02686 Glu-tRNAGln amidotransferase C subunit IUJ48_29495 PF04085 rod shape-determining protein MreC IUJ48_29505 PF00905 Penicillin binding protein transpeptidase domain IUJ48_29505 PF03717 Penicillin-binding Protein dimerisation domain IUJ48_29510 PF01098 Cell cycle protein IUJ48_29515 PF02615 Malate/L-lactate dehydrogenase IUJ48_29520 PF00939 Sodium:sulfate symporter transmembrane region IUJ48_29525 PF00440 Bacterial regulatory proteins, tetR family IUJ48_29535 PF00696 Amino acid kinase family IUJ48_29540 PF03180 NLPA lipoprotein IUJ48_29545 PF00578 AhpC/TSA family IUJ48_29550 PF04972 BON domain IUJ48_29555 PF13580 SIS domain IUJ48_29560 PF02021 Uncharacterised protein family UPF0102 IUJ48_29565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ48_29570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ48_29570 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ48_29575 PF03330 Lytic transglycolase IUJ48_29575 PF05036 Sporulation related domain IUJ48_29580 PF03668 P-loop ATPase protein family IUJ48_29590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ48_29590 PF00034 Cytochrome c IUJ48_29595 PF00155 Aminotransferase class I and II IUJ48_29595 PF00392 Bacterial regulatory proteins, gntR family IUJ48_29600 PF07475 HPr Serine kinase C-terminal domain IUJ48_29600 PF02603 HPr Serine kinase N terminus IUJ48_29605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ48_29610 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IUJ48_29615 PF00005 ABC transporter IUJ48_29635 PF00571 CBS domain IUJ48_29635 PF01380 SIS domain IUJ48_29640 PF02222 ATP-grasp domain IUJ48_29650 PF01654 Cytochrome bd terminal oxidase subunit I IUJ48_29655 PF02322 Cytochrome bd terminal oxidase subunit II IUJ48_29660 PF08173 Membrane bound YbgT-like protein IUJ48_29665 PF00664 ABC transporter transmembrane region IUJ48_29665 PF00005 ABC transporter IUJ48_29670 PF00664 ABC transporter transmembrane region IUJ48_29670 PF00005 ABC transporter IUJ48_29675 PF00156 Phosphoribosyl transferase domain IUJ48_29680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_29680 PF03466 LysR substrate binding domain IUJ48_29690 PF13609 Gram-negative porin IUJ48_29695 PF00291 Pyridoxal-phosphate dependent enzyme IUJ48_29695 PF00585 C-terminal regulatory domain of Threonine dehydratase IUJ48_29715 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_29720 PF01168 Alanine racemase, N-terminal domain IUJ48_29725 PF00155 Aminotransferase class I and II IUJ48_29730 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_29740 PF00682 HMGL-like IUJ48_29745 PF02481 DNA recombination-mediator protein A IUJ48_29745 PF17782 DprA winged helix domain IUJ48_29750 PF01327 Polypeptide deformylase IUJ48_29755 PF00551 Formyl transferase IUJ48_29755 PF02911 Formyl transferase, C-terminal domain IUJ48_29765 PF13419 Haloacid dehalogenase-like hydrolase IUJ48_29775 PF03641 Possible lysine decarboxylase IUJ48_29785 PF01638 HxlR-like helix-turn-helix IUJ48_29790 PF00893 Small Multidrug Resistance protein IUJ48_29795 PF04055 Radical SAM superfamily IUJ48_29795 PF00919 Uncharacterized protein family UPF0004 IUJ48_29795 PF18693 TRAM domain IUJ48_29800 PF01810 LysE type translocator IUJ48_29805 PF01029 NusB family IUJ48_29805 PF01189 16S rRNA methyltransferase RsmB/F IUJ48_29815 PF00672 HAMP domain IUJ48_29815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_29815 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_29815 PF00989 PAS fold IUJ48_29820 PF02954 Bacterial regulatory protein, Fis family IUJ48_29820 PF00072 Response regulator receiver domain IUJ48_29820 PF00158 Sigma-54 interaction domain IUJ48_29825 PF02254 TrkA-N domain IUJ48_29825 PF02080 TrkA-C domain IUJ48_29830 PF02386 Cation transport protein IUJ48_29835 PF04107 Glutamate-cysteine ligase family 2(GCS2) IUJ48_29840 PF08241 Methyltransferase domain IUJ48_29845 PF00156 Phosphoribosyl transferase domain IUJ48_29850 PF00588 SpoU rRNA Methylase family IUJ48_29855 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_29860 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IUJ48_29860 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IUJ48_29865 PF02556 Preprotein translocase subunit SecB IUJ48_29870 PF00462 Glutaredoxin IUJ48_29875 PF00581 Rhodanese-like domain IUJ48_29875 PF12368 Rhodanase C-terminal IUJ48_29875 PF17773 UPF0176 acylphosphatase like domain IUJ48_29880 PF00300 Histidine phosphatase superfamily (branch 1) IUJ48_29885 PF01551 Peptidase family M23 IUJ48_29890 PF03572 Peptidase family S41 IUJ48_29890 PF13180 PDZ domain IUJ48_29895 PF00899 ThiF family IUJ48_29900 PF05231 MASE1 IUJ48_29900 PF13426 PAS domain IUJ48_29900 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_29900 PF08447 PAS fold IUJ48_29900 PF08448 PAS fold IUJ48_29900 PF00563 EAL domain IUJ48_29905 PF00392 Bacterial regulatory proteins, gntR family IUJ48_29905 PF07729 FCD domain IUJ48_29910 PF01565 FAD binding domain IUJ48_29910 PF02913 FAD linked oxidases, C-terminal domain IUJ48_29915 PF13667 ThiC-associated domain IUJ48_29915 PF01964 Radical SAM ThiC family IUJ48_29920 PF07549 SecD/SecF GG Motif IUJ48_29920 PF02355 Protein export membrane protein IUJ48_29935 PF00696 Amino acid kinase family IUJ48_29935 PF01472 PUA domain IUJ48_29940 PF01018 GTP1/OBG IUJ48_29940 PF01926 50S ribosome-binding GTPase IUJ48_29945 PF01016 Ribosomal L27 protein IUJ48_29950 PF00829 Ribosomal prokaryotic L21 protein IUJ48_29955 PF00348 Polyprenyl synthetase IUJ48_29965 PF10609 NUBPL iron-transfer P-loop NTPase IUJ48_30020 PF01131 DNA topoisomerase IUJ48_30020 PF01751 Toprim domain IUJ48_30030 PF02899 Phage integrase, N-terminal SAM-like domain IUJ48_30030 PF00589 Phage integrase family IUJ48_30070 PF03050 Transposase IS66 family IUJ48_30070 PF13817 IS66 C-terminal element IUJ48_30070 PF13007 Transposase C of IS166 homeodomain IUJ48_30070 PF13005 zinc-finger binding domain of transposase IS66 IUJ48_30095 PF01740 STAS domain IUJ48_30095 PF00916 Sulfate permease family IUJ48_30115 PF00118 TCP-1/cpn60 chaperonin family IUJ48_30125 PF00013 KH domain IUJ48_30125 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IUJ48_30125 PF01138 3' exoribonuclease family, domain 1 IUJ48_30125 PF03725 3' exoribonuclease family, domain 2 IUJ48_30125 PF00575 S1 RNA binding domain IUJ48_30140 PF00009 Elongation factor Tu GTP binding domain IUJ48_30140 PF03144 Elongation factor Tu domain 2 IUJ48_30140 PF16658 Class II release factor RF3, C-terminal domain IUJ48_30145 PF01740 STAS domain IUJ48_30145 PF00916 Sulfate permease family IUJ48_30150 PF00582 Universal stress protein family IUJ48_30165 PF13439 Glycosyltransferase Family 4 IUJ48_30165 PF00534 Glycosyl transferases group 1 IUJ48_30175 PF08534 Redoxin IUJ48_30180 PF02683 Cytochrome C biogenesis protein transmembrane region IUJ48_30200 PF03625 Domain of unknown function DUF302 IUJ48_30200 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IUJ48_30215 PF05114 Protein of unknown function (DUF692) IUJ48_30220 PF01526 Tn3 transposase DDE domain IUJ48_30220 PF13700 Domain of unknown function (DUF4158) IUJ48_30225 PF02796 Helix-turn-helix domain of resolvase IUJ48_30225 PF00239 Resolvase, N terminal domain IUJ48_30230 PF00563 EAL domain IUJ48_30230 PF00990 Diguanylate cyclase, GGDEF domain IUJ48_30230 PF03707 Bacterial signalling protein N terminal repeat IUJ48_30235 PF05052 MerE protein IUJ48_30240 PF13411 MerR HTH family regulatory protein IUJ48_30245 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_30245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ48_30245 PF00403 Heavy-metal-associated domain IUJ48_30250 PF00403 Heavy-metal-associated domain IUJ48_30255 PF02411 MerT mercuric transport protein IUJ48_30260 PF09278 MerR, DNA binding IUJ48_30260 PF00376 MerR family regulatory protein IUJ48_30275 PF06463 Molybdenum Cofactor Synthesis C IUJ48_30275 PF04055 Radical SAM superfamily IUJ48_30280 PF00034 Cytochrome c IUJ48_30285 PF00384 Molybdopterin oxidoreductase IUJ48_30285 PF01568 Molydopterin dinucleotide binding domain IUJ48_30285 PF18465 Rieske 3Fe-4S IUJ48_30290 PF00355 Rieske [2Fe-2S] domain IUJ48_30300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_30300 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_30305 PF00158 Sigma-54 interaction domain IUJ48_30305 PF00072 Response regulator receiver domain IUJ48_30305 PF02954 Bacterial regulatory protein, Fis family IUJ48_30315 PF00743 Flavin-binding monooxygenase-like IUJ48_30325 PF03358 NADPH-dependent FMN reductase IUJ48_30335 PF03960 ArsC family IUJ48_30355 PF12849 PBP superfamily domain IUJ48_30360 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_30365 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_30370 PF00005 ABC transporter IUJ48_30380 PF01451 Low molecular weight phosphotyrosine protein phosphatase IUJ48_30385 PF06953 Arsenical resistance operon trans-acting repressor ArsD IUJ48_30390 PF02374 Anion-transporting ATPase IUJ48_30395 PF02040 Arsenical pump membrane protein IUJ48_30400 PF11398 Protein of unknown function (DUF2813) IUJ48_30460 PF05433 Glycine zipper 2TM domain IUJ48_30500 PF00437 Type II/IV secretion system protein IUJ48_30525 PF03743 Bacterial conjugation TrbI-like protein IUJ48_30560 PF03135 CagE, TrbE, VirB family, component of type IV transporter system IUJ48_30575 PF00437 Type II/IV secretion system protein IUJ48_30580 PF01464 Transglycosylase SLT domain IUJ48_30610 PF02899 Phage integrase, N-terminal SAM-like domain IUJ48_30610 PF00589 Phage integrase family IUJ48_30630 PF00795 Carbon-nitrogen hydrolase IUJ48_30645 PF00107 Zinc-binding dehydrogenase IUJ48_30645 PF08240 Alcohol dehydrogenase GroES-like domain IUJ48_30665 PF12697 Alpha/beta hydrolase family IUJ48_30680 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ48_30685 PF01261 Xylose isomerase-like TIM barrel IUJ48_30690 PF01370 NAD dependent epimerase/dehydratase family IUJ48_30695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ48_30695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ48_30700 PF17042 Nucleotide-binding C-terminal domain IUJ48_30700 PF07005 Sugar-binding N-terminal domain IUJ48_30705 PF07729 FCD domain IUJ48_30705 PF00392 Bacterial regulatory proteins, gntR family IUJ48_30710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_30710 PF03466 LysR substrate binding domain IUJ48_30715 PF07690 Major Facilitator Superfamily IUJ48_30725 PF00593 TonB dependent receptor IUJ48_30725 PF07715 TonB-dependent Receptor Plug Domain IUJ48_30730 PF01261 Xylose isomerase-like TIM barrel IUJ48_30735 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_30740 PF00892 EamA-like transporter family IUJ48_30750 PF01037 Lrp/AsnC ligand binding domain IUJ48_30755 PF01810 LysE type translocator IUJ48_30765 PF01488 Shikimate / quinate 5-dehydrogenase IUJ48_30765 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IUJ48_30765 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IUJ48_30770 PF00472 RF-1 domain IUJ48_30770 PF03462 PCRF domain IUJ48_30775 PF17827 PrmC N-terminal domain IUJ48_30775 PF05175 Methyltransferase small domain IUJ48_30780 PF00462 Glutaredoxin IUJ48_30785 PF02441 Flavoprotein IUJ48_30795 PF03180 NLPA lipoprotein IUJ48_30800 PF03079 ARD/ARD' family IUJ48_30815 PF00501 AMP-binding enzyme IUJ48_30815 PF13193 AMP-binding enzyme C-terminal domain IUJ48_30820 PF03401 Tripartite tricarboxylate transporter family receptor IUJ48_30835 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ48_30835 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ48_30840 PF07690 Major Facilitator Superfamily IUJ48_30845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_30845 PF03466 LysR substrate binding domain IUJ48_30855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_30855 PF03466 LysR substrate binding domain IUJ48_30870 PF00043 Glutathione S-transferase, C-terminal domain IUJ48_30870 PF13417 Glutathione S-transferase, N-terminal domain IUJ48_30875 PF00890 FAD binding domain IUJ48_30890 PF00005 ABC transporter IUJ48_30895 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_30895 PF00005 ABC transporter IUJ48_30900 PF11862 Domain of unknown function (DUF3382) IUJ48_30900 PF02653 Branched-chain amino acid transport system / permease component IUJ48_30905 PF02653 Branched-chain amino acid transport system / permease component IUJ48_30920 PF07729 FCD domain IUJ48_30920 PF00392 Bacterial regulatory proteins, gntR family IUJ48_30925 PF00484 Carbonic anhydrase IUJ48_30945 PF12146 Serine aminopeptidase, S33 IUJ48_30955 PF02426 Muconolactone delta-isomerase IUJ48_30960 PF01144 Coenzyme A transferase IUJ48_30965 PF01144 Coenzyme A transferase IUJ48_30970 PF09339 IclR helix-turn-helix domain IUJ48_30970 PF01614 Bacterial transcriptional regulator IUJ48_30980 PF02667 Short chain fatty acid transporter IUJ48_30985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ48_30985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ48_30990 PF00311 Phosphoenolpyruvate carboxylase IUJ48_30995 PF06508 Queuosine biosynthesis protein QueC IUJ48_31000 PF00563 EAL domain IUJ48_31000 PF12792 CSS motif domain associated with EAL IUJ48_31015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_31015 PF03466 LysR substrate binding domain IUJ48_31020 PF00682 HMGL-like IUJ48_31020 PF08502 LeuA allosteric (dimerisation) domain IUJ48_31030 PF00920 Dehydratase family IUJ48_31035 PF03466 LysR substrate binding domain IUJ48_31035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_31040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ48_31040 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ48_31045 PF00364 Biotin-requiring enzyme IUJ48_31045 PF02817 e3 binding domain IUJ48_31045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ48_31055 PF00676 Dehydrogenase E1 component IUJ48_31065 PF00005 ABC transporter IUJ48_31070 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ48_31070 PF00005 ABC transporter IUJ48_31080 PF02653 Branched-chain amino acid transport system / permease component IUJ48_31085 PF13458 Periplasmic binding protein IUJ48_31090 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IUJ48_31090 PF01488 Shikimate / quinate 5-dehydrogenase IUJ48_31090 PF08501 Shikimate dehydrogenase substrate binding domain IUJ48_31100 PF00392 Bacterial regulatory proteins, gntR family IUJ48_31100 PF07729 FCD domain IUJ48_31110 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) IUJ48_31120 PF02321 Outer membrane efflux protein IUJ48_31125 PF00873 AcrB/AcrD/AcrF family IUJ48_31130 PF13533 Biotin-lipoyl like IUJ48_31135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_31135 PF03466 LysR substrate binding domain IUJ48_31140 PF01594 AI-2E family transporter IUJ48_31155 PF00701 Dihydrodipicolinate synthetase family IUJ48_31160 PF00528 Binding-protein-dependent transport system inner membrane component IUJ48_31165 PF08402 TOBE domain IUJ48_31165 PF00005 ABC transporter IUJ48_31175 PF02913 FAD linked oxidases, C-terminal domain IUJ48_31175 PF01565 FAD binding domain IUJ48_31180 PF01070 FMN-dependent dehydrogenase IUJ48_31185 PF14748 Pyrroline-5-carboxylate reductase dimerisation IUJ48_31185 PF03807 NADP oxidoreductase coenzyme F420-dependent IUJ48_31190 PF07690 Major Facilitator Superfamily IUJ48_31205 PF03551 Transcriptional regulator PadR-like family IUJ48_31210 PF04954 Siderophore-interacting protein IUJ48_31210 PF08021 Siderophore-interacting FAD-binding domain IUJ48_31215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_31215 PF03466 LysR substrate binding domain IUJ48_31235 PF00512 His Kinase A (phospho-acceptor) domain IUJ48_31235 PF18415 Histidine kinase receptor ArcB trans-membrane domain IUJ48_31235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_31235 PF00072 Response regulator receiver domain IUJ48_31235 PF01627 Hpt domain IUJ48_31235 PF00989 PAS fold IUJ48_31340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ48_31340 PF03466 LysR substrate binding domain IUJ48_31355 PF05853 beta-keto acid cleavage enzyme IUJ48_31360 PF05698 Bacterial trigger factor protein (TF) C-terminus IUJ48_31365 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ48_31380 PF00860 Permease family IUJ48_31390 PF00183 Hsp90 protein IUJ48_31390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ48_31395 PF07690 Major Facilitator Superfamily IUJ48_31400 PF07715 TonB-dependent Receptor Plug Domain IUJ48_31400 PF00593 TonB dependent receptor