locus-tag class description Acfer_0001 PF08299 Bacterial dnaA protein helix-turn-helix Acfer_0001 PF00308 Bacterial dnaA protein Acfer_0001 PF11638 DnaA N-terminal domain Acfer_0003 PF00308 Bacterial dnaA protein Acfer_0003 PF08299 Bacterial dnaA protein helix-turn-helix Acfer_0003 PF11638 DnaA N-terminal domain Acfer_0004 PF02767 DNA polymerase III beta subunit, central domain Acfer_0004 PF02768 DNA polymerase III beta subunit, C-terminal domain Acfer_0004 PF00712 DNA polymerase III beta subunit, N-terminal domain Acfer_0005 PF02463 RecF/RecN/SMC N terminal domain Acfer_0008 PF00204 DNA gyrase B Acfer_0008 PF00986 DNA gyrase B subunit, carboxyl terminus Acfer_0008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0008 PF01751 Toprim domain Acfer_0010 PF01925 Sulfite exporter TauE/SafE Acfer_0011 PF00521 DNA gyrase/topoisomerase IV, subunit A Acfer_0011 PF03989 DNA gyrase C-terminal domain, beta-propeller Acfer_0013 PF03466 LysR substrate binding domain Acfer_0013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0014 PF00390 Malic enzyme, N-terminal domain Acfer_0014 PF03949 Malic enzyme, NAD binding domain Acfer_0015 PF13458 Periplasmic binding protein Acfer_0016 PF02653 Branched-chain amino acid transport system / permease component Acfer_0017 PF02653 Branched-chain amino acid transport system / permease component Acfer_0017 PF11862 Domain of unknown function (DUF3382) Acfer_0018 PF12399 Branched-chain amino acid ATP-binding cassette transporter Acfer_0018 PF00005 ABC transporter Acfer_0019 PF00005 ABC transporter Acfer_0020 PF00571 CBS domain Acfer_0024 PF11146 Protein of unknown function (DUF2905) Acfer_0027 PF00293 NUDIX domain Acfer_0028 PF03806 AbgT putative transporter family Acfer_0030 PF01546 Peptidase family M20/M25/M40 Acfer_0030 PF07687 Peptidase dimerisation domain Acfer_0031 PF01177 Asp/Glu/Hydantoin racemase Acfer_0034 PF04397 LytTr DNA-binding domain Acfer_0034 PF00072 Response regulator receiver domain Acfer_0035 PF00395 S-layer homology domain Acfer_0037 PF00266 Aminotransferase class-V Acfer_0038 PF01250 Ribosomal protein S6 Acfer_0039 PF00436 Single-strand binding protein family Acfer_0040 PF01084 Ribosomal protein S18 Acfer_0042 PF01368 DHH family Acfer_0042 PF02272 DHHA1 domain Acfer_0044 PF00772 DnaB-like helicase N terminal domain Acfer_0044 PF03796 DnaB-like helicase C terminal domain Acfer_0045 PF00206 Lyase Acfer_0045 PF10397 Adenylosuccinate lyase C-terminus Acfer_0046 PF00709 Adenylosuccinate synthetase Acfer_0047 PF03616 Sodium/glutamate symporter Acfer_0049 PF04960 Glutaminase Acfer_0050 PF01235 Sodium:alanine symporter family Acfer_0051 PF03466 LysR substrate binding domain Acfer_0051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0052 PF01226 Formate/nitrite transporter Acfer_0053 PF00465 Iron-containing alcohol dehydrogenase Acfer_0056 PF02632 BioY family Acfer_0058 PF00202 Aminotransferase class-III Acfer_0061 PF02659 Putative manganese efflux pump Acfer_0062 PF00817 impB/mucB/samB family Acfer_0062 PF11799 impB/mucB/samB family C-terminal domain Acfer_0062 PF11798 IMS family HHH motif Acfer_0063 PF00892 EamA-like transporter family Acfer_0064 PF01053 Cys/Met metabolism PLP-dependent enzyme Acfer_0066 PF07687 Peptidase dimerisation domain Acfer_0066 PF01546 Peptidase family M20/M25/M40 Acfer_0068 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Acfer_0068 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acfer_0068 PF01842 ACT domain Acfer_0070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0070 PF03466 LysR substrate binding domain Acfer_0071 PF13378 Enolase C-terminal domain-like Acfer_0072 PF02447 GntP family permease Acfer_0073 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acfer_0073 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Acfer_0073 PF01842 ACT domain Acfer_0075 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Acfer_0075 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Acfer_0075 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Acfer_0076 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Acfer_0078 PF00920 Dehydratase family Acfer_0080 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Acfer_0080 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Acfer_0082 PF08666 SAF domain Acfer_0082 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Acfer_0083 PF03553 Na+/H+ antiporter family Acfer_0084 PF01475 Ferric uptake regulator family Acfer_0085 PF00950 ABC 3 transport family Acfer_0086 PF00005 ABC transporter Acfer_0087 PF01297 Zinc-uptake complex component A periplasmic Acfer_0089 PF00072 Response regulator receiver domain Acfer_0089 PF00486 Transcriptional regulatory protein, C terminal Acfer_0090 PF00512 His Kinase A (phospho-acceptor) domain Acfer_0090 PF00672 HAMP domain Acfer_0090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0093 PF01638 HxlR-like helix-turn-helix Acfer_0095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0095 PF03466 LysR substrate binding domain Acfer_0096 PF00694 Aconitase C-terminal domain Acfer_0096 PF00330 Aconitase family (aconitate hydratase) Acfer_0097 PF03600 Citrate transporter Acfer_0098 PF00072 Response regulator receiver domain Acfer_0098 PF00486 Transcriptional regulatory protein, C terminal Acfer_0099 PF00512 His Kinase A (phospho-acceptor) domain Acfer_0099 PF08521 Two-component sensor kinase N-terminal Acfer_0099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0103 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Acfer_0103 PF01871 AMMECR1 Acfer_0107 PF02424 ApbE family Acfer_0108 PF13187 4Fe-4S dicluster domain Acfer_0108 PF04060 Putative Fe-S cluster Acfer_0109 PF02508 Rnf-Nqr subunit, membrane protein Acfer_0110 PF02508 Rnf-Nqr subunit, membrane protein Acfer_0111 PF04205 FMN-binding domain Acfer_0112 PF03116 NQR2, RnfD, RnfE family Acfer_0113 PF10531 SLBB domain Acfer_0113 PF13375 RnfC Barrel sandwich hybrid domain Acfer_0113 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Acfer_0113 PF13237 4Fe-4S dicluster domain Acfer_0116 PF02954 Bacterial regulatory protein, Fis family Acfer_0116 PF00072 Response regulator receiver domain Acfer_0116 PF00158 Sigma-54 interaction domain Acfer_0117 PF02390 Putative methyltransferase Acfer_0118 PF01098 Cell cycle protein Acfer_0119 PF03717 Penicillin-binding Protein dimerisation domain Acfer_0119 PF03793 PASTA domain Acfer_0119 PF00905 Penicillin binding protein transpeptidase domain Acfer_0120 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Acfer_0120 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Acfer_0124 PF02664 S-Ribosylhomocysteinase (LuxS) Acfer_0125 PF00989 PAS fold Acfer_0125 PF16736 Single Cache-like Acfer_0125 PF00512 His Kinase A (phospho-acceptor) domain Acfer_0125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0126 PF00072 Response regulator receiver domain Acfer_0126 PF00486 Transcriptional regulatory protein, C terminal Acfer_0130 PF02554 Carbon starvation protein CstA Acfer_0131 PF02913 FAD linked oxidases, C-terminal domain Acfer_0131 PF01565 FAD binding domain Acfer_0133 PF02146 Sir2 family Acfer_0134 PF02403 Seryl-tRNA synthetase N-terminal domain Acfer_0134 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Acfer_0135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Acfer_0135 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Acfer_0136 PF01979 Amidohydrolase family Acfer_0137 PF13580 SIS domain Acfer_0138 PF02378 Phosphotransferase system, EIIC Acfer_0138 PF00367 phosphotransferase system, EIIB Acfer_0140 PF06071 Protein of unknown function (DUF933) Acfer_0140 PF01926 50S ribosome-binding GTPase Acfer_0142 PF01467 Cytidylyltransferase-like Acfer_0143 PF01966 HD domain Acfer_0144 PF03816 Cell envelope-related transcriptional attenuator domain Acfer_0146 PF13509 S1 domain Acfer_0146 PF17783 CvfB-like winged helix domain Acfer_0147 PF00665 Integrase core domain Acfer_0147 PF13333 Integrase core domain Acfer_0147 PF13276 HTH-like domain Acfer_0150 PF03466 LysR substrate binding domain Acfer_0150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0152 PF00330 Aconitase family (aconitate hydratase) Acfer_0153 PF00694 Aconitase C-terminal domain Acfer_0154 PF00180 Isocitrate/isopropylmalate dehydrogenase Acfer_0155 PF13673 Acetyltransferase (GNAT) domain Acfer_0155 PF13302 Acetyltransferase (GNAT) domain Acfer_0155 PF03352 Methyladenine glycosylase Acfer_0155 PF00117 Glutamine amidotransferase class-I Acfer_0155 PF00958 GMP synthase C terminal domain Acfer_0156 PF10369 Small subunit of acetolactate synthase Acfer_0156 PF01842 ACT domain Acfer_0157 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Acfer_0157 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Acfer_0157 PF00205 Thiamine pyrophosphate enzyme, central domain Acfer_0158 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Acfer_0158 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Acfer_0159 PF00486 Transcriptional regulatory protein, C terminal Acfer_0159 PF00072 Response regulator receiver domain Acfer_0160 PF00512 His Kinase A (phospho-acceptor) domain Acfer_0160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0160 PF00672 HAMP domain Acfer_0161 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Acfer_0161 PF00205 Thiamine pyrophosphate enzyme, central domain Acfer_0161 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Acfer_0162 PF10369 Small subunit of acetolactate synthase Acfer_0162 PF01842 ACT domain Acfer_0164 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Acfer_0164 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Acfer_0166 PF05662 Coiled stalk of trimeric autotransporter adhesin Acfer_0166 PF05658 Head domain of trimeric autotransporter adhesin Acfer_0166 PF03895 YadA-like membrane anchor domain Acfer_0166 PF13018 Extended Signal Peptide of Type V secretion system Acfer_0167 PF01717 Cobalamin-independent synthase, Catalytic domain Acfer_0168 PF01869 BadF/BadG/BcrA/BcrD ATPase family Acfer_0169 PF01943 Polysaccharide biosynthesis protein Acfer_0169 PF14667 Polysaccharide biosynthesis C-terminal domain Acfer_0172 PF00155 Aminotransferase class I and II Acfer_0173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0173 PF03466 LysR substrate binding domain Acfer_0174 PF01551 Peptidase family M23 Acfer_0175 PF10400 Virulence activator alpha C-term Acfer_0175 PF03551 Transcriptional regulator PadR-like family Acfer_0176 PF00326 Prolyl oligopeptidase family Acfer_0176 PF07676 WD40-like Beta Propeller Repeat Acfer_0177 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Acfer_0178 PF00171 Aldehyde dehydrogenase family Acfer_0179 PF02073 Thermophilic metalloprotease (M29) Acfer_0181 PF01496 V-type ATPase 116kDa subunit family Acfer_0182 PF00137 ATP synthase subunit C Acfer_0185 PF01990 ATP synthase (F/14-kDa) subunit Acfer_0186 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Acfer_0186 PF16886 ATPsynthase alpha/beta subunit N-term extension Acfer_0186 PF02874 ATP synthase alpha/beta family, beta-barrel domain Acfer_0189 PF00392 Bacterial regulatory proteins, gntR family Acfer_0189 PF00155 Aminotransferase class I and II Acfer_0192 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acfer_0194 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Acfer_0195 PF01541 GIY-YIG catalytic domain Acfer_0196 PF00313 'Cold-shock' DNA-binding domain Acfer_0198 PF05525 Branched-chain amino acid transport protein Acfer_0203 PF00206 Lyase Acfer_0203 PF10415 Fumarase C C-terminus Acfer_0204 PF03788 LrgA family Acfer_0205 PF04172 LrgB-like family Acfer_0206 PF07687 Peptidase dimerisation domain Acfer_0206 PF01546 Peptidase family M20/M25/M40 Acfer_0207 PF03606 C4-dicarboxylate anaerobic carrier Acfer_0208 PF01758 Sodium Bile acid symporter family Acfer_0210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Acfer_0210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Acfer_0212 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_0213 PF08402 TOBE domain Acfer_0213 PF00005 ABC transporter Acfer_0214 PF01042 Endoribonuclease L-PSP Acfer_0215 PF09339 IclR helix-turn-helix domain Acfer_0215 PF01614 Bacterial transcriptional regulator Acfer_0216 PF00491 Arginase family Acfer_0217 PF12822 ECF transporter, substrate-specific component Acfer_0221 PF00266 Aminotransferase class-V Acfer_0222 PF03616 Sodium/glutamate symporter Acfer_0223 PF04011 LemA family Acfer_0227 PF01926 50S ribosome-binding GTPase Acfer_0227 PF01018 GTP1/OBG Acfer_0227 PF09269 Domain of unknown function (DUF1967) Acfer_0228 PF01472 PUA domain Acfer_0228 PF00696 Amino acid kinase family Acfer_0229 PF00171 Aldehyde dehydrogenase family Acfer_0230 PF13533 Biotin-lipoyl like Acfer_0231 PF00005 ABC transporter Acfer_0232 PF02687 FtsX-like permease family Acfer_0232 PF12704 MacB-like periplasmic core domain Acfer_0232 PF00005 ABC transporter Acfer_0235 PF02971 Formiminotransferase domain Acfer_0235 PF07837 Formiminotransferase domain, N-terminal subdomain Acfer_0236 PF01268 Formate--tetrahydrofolate ligase Acfer_0237 PF04961 Formiminotransferase-cyclodeaminase Acfer_0241 PF00221 Aromatic amino acid lyase Acfer_0242 PF13726 Na+-H+ antiporter family Acfer_0242 PF03553 Na+/H+ antiporter family Acfer_0243 PF00221 Aromatic amino acid lyase Acfer_0244 PF02913 FAD linked oxidases, C-terminal domain Acfer_0244 PF01565 FAD binding domain Acfer_0246 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acfer_0246 PF00529 HlyD membrane-fusion protein of T1SS Acfer_0247 PF00873 AcrB/AcrD/AcrF family Acfer_0248 PF06472 ABC transporter transmembrane region 2 Acfer_0248 PF00005 ABC transporter Acfer_0249 PF01235 Sodium:alanine symporter family Acfer_0250 PF00753 Metallo-beta-lactamase superfamily Acfer_0250 PF00258 Flavodoxin Acfer_0250 PF00301 Rubredoxin Acfer_0251 PF08032 RNA 2'-O ribose methyltransferase substrate binding Acfer_0251 PF00588 SpoU rRNA Methylase family Acfer_0252 PF08281 Sigma-70, region 4 Acfer_0252 PF04542 Sigma-70 region 2 Acfer_0254 PF00365 Phosphofructokinase Acfer_0255 PF02673 Bacitracin resistance protein BacA Acfer_0256 PF03144 Elongation factor Tu domain 2 Acfer_0256 PF03143 Elongation factor Tu C-terminal domain Acfer_0256 PF00009 Elongation factor Tu GTP binding domain Acfer_0258 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Acfer_0259 PF00467 KOW motif Acfer_0259 PF02357 Transcription termination factor nusG Acfer_0260 PF03946 Ribosomal protein L11, N-terminal domain Acfer_0260 PF00298 Ribosomal protein L11, RNA binding domain Acfer_0261 PF00687 Ribosomal protein L1p/L10e family Acfer_0262 PF00466 Ribosomal protein L10 Acfer_0263 PF00542 Ribosomal protein L7/L12 C-terminal domain Acfer_0263 PF16320 Ribosomal protein L7/L12 dimerisation domain Acfer_0264 PF00005 ABC transporter Acfer_0264 PF09383 NIL domain Acfer_0265 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_0266 PF03180 NLPA lipoprotein Acfer_0267 PF01546 Peptidase family M20/M25/M40 Acfer_0267 PF07687 Peptidase dimerisation domain Acfer_0268 PF04284 Protein of unknown function (DUF441) Acfer_0269 PF00258 Flavodoxin Acfer_0271 PF02321 Outer membrane efflux protein Acfer_0272 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acfer_0273 PF00005 ABC transporter Acfer_0282 PF00591 Glycosyl transferase family, a/b domain Acfer_0282 PF00117 Glutamine amidotransferase class-I Acfer_0282 PF02885 Glycosyl transferase family, helical bundle domain Acfer_0283 PF02885 Glycosyl transferase family, helical bundle domain Acfer_0283 PF00591 Glycosyl transferase family, a/b domain Acfer_0285 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Acfer_0286 PF00291 Pyridoxal-phosphate dependent enzyme Acfer_0287 PF00290 Tryptophan synthase alpha chain Acfer_0288 PF03816 Cell envelope-related transcriptional attenuator domain Acfer_0290 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Acfer_0290 PF08501 Shikimate dehydrogenase substrate binding domain Acfer_0292 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Acfer_0293 PF03480 Bacterial extracellular solute-binding protein, family 7 Acfer_0294 PF01487 Type I 3-dehydroquinase Acfer_0296 PF07687 Peptidase dimerisation domain Acfer_0296 PF01546 Peptidase family M20/M25/M40 Acfer_0298 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Acfer_0300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0300 PF03466 LysR substrate binding domain Acfer_0301 PF02632 BioY family Acfer_0302 PF03900 Porphobilinogen deaminase, C-terminal domain Acfer_0302 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Acfer_0304 PF14824 Sirohaem biosynthesis protein central Acfer_0304 PF10414 Sirohaem synthase dimerisation region Acfer_0304 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Acfer_0305 PF02915 Rubrerythrin Acfer_0307 PF08218 Citrate lyase ligase C-terminal domain Acfer_0308 PF02773 S-adenosylmethionine synthetase, C-terminal domain Acfer_0308 PF02772 S-adenosylmethionine synthetase, central domain Acfer_0308 PF00438 S-adenosylmethionine synthetase, N-terminal domain Acfer_0309 PF17764 3′ DNA-binding domain (3′BD) Acfer_0309 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Acfer_0309 PF00271 Helicase conserved C-terminal domain Acfer_0309 PF04851 Type III restriction enzyme, res subunit Acfer_0309 PF18074 Primosomal protein N C-terminal domain Acfer_0310 PF01327 Polypeptide deformylase Acfer_0311 PF02911 Formyl transferase, C-terminal domain Acfer_0311 PF00551 Formyl transferase Acfer_0313 PF01029 NusB family Acfer_0313 PF01189 16S rRNA methyltransferase RsmB/F Acfer_0314 PF04055 Radical SAM superfamily Acfer_0316 PF00069 Protein kinase domain Acfer_0316 PF03793 PASTA domain Acfer_0317 PF03193 RsgA GTPase Acfer_0317 PF16745 RsgA N-terminal domain Acfer_0318 PF00834 Ribulose-phosphate 3 epimerase family Acfer_0321 PF00005 ABC transporter Acfer_0322 PF01618 MotA/TolQ/ExbB proton channel family Acfer_0323 PF02472 Biopolymer transport protein ExbD/TolR Acfer_0327 PF01758 Sodium Bile acid symporter family Acfer_0328 PF01022 Bacterial regulatory protein, arsR family Acfer_0329 PF00149 Calcineurin-like phosphoesterase Acfer_0329 PF16656 Purple acid Phosphatase, N-terminal domain Acfer_0330 PF01638 HxlR-like helix-turn-helix Acfer_0333 PF00155 Aminotransferase class I and II Acfer_0335 PF13416 Bacterial extracellular solute-binding protein Acfer_0336 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_0337 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_0338 PF08402 TOBE domain Acfer_0338 PF00005 ABC transporter Acfer_0339 PF00829 Ribosomal prokaryotic L21 protein Acfer_0341 PF01016 Ribosomal L27 protein Acfer_0343 PF04560 RNA polymerase Rpb2, domain 7 Acfer_0343 PF10385 RNA polymerase beta subunit external 1 domain Acfer_0343 PF04565 RNA polymerase Rpb2, domain 3 Acfer_0343 PF04563 RNA polymerase beta subunit Acfer_0343 PF00562 RNA polymerase Rpb2, domain 6 Acfer_0343 PF04561 RNA polymerase Rpb2, domain 2 Acfer_0344 PF05000 RNA polymerase Rpb1, domain 4 Acfer_0344 PF04983 RNA polymerase Rpb1, domain 3 Acfer_0344 PF04998 RNA polymerase Rpb1, domain 5 Acfer_0344 PF04997 RNA polymerase Rpb1, domain 1 Acfer_0344 PF00623 RNA polymerase Rpb1, domain 2 Acfer_0346 PF03806 AbgT putative transporter family Acfer_0347 PF03806 AbgT putative transporter family Acfer_0348 PF00005 ABC transporter Acfer_0349 PF00005 ABC transporter Acfer_0350 PF02361 Cobalt transport protein Acfer_0352 PF07715 TonB-dependent Receptor Plug Domain Acfer_0352 PF00593 TonB dependent receptor Acfer_0353 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Acfer_0353 PF01872 RibD C-terminal domain Acfer_0354 PF00677 Lumazine binding domain Acfer_0355 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Acfer_0355 PF00925 GTP cyclohydrolase II Acfer_0356 PF00885 6,7-dimethyl-8-ribityllumazine synthase Acfer_0357 PF01430 Hsp33 protein Acfer_0358 PF00154 recA bacterial DNA recombination protein Acfer_0360 PF00013 KH domain Acfer_0360 PF12072 Domain of unknown function (DUF3552) Acfer_0360 PF01966 HD domain Acfer_0363 PF01048 Phosphorylase superfamily Acfer_0364 PF01676 Metalloenzyme superfamily Acfer_0366 PF02535 ZIP Zinc transporter Acfer_0367 PF03063 Prismane/CO dehydrogenase family Acfer_0369 PF04343 Protein of unknown function, DUF488 Acfer_0371 PF00375 Sodium:dicarboxylate symporter family Acfer_0372 PF12706 Beta-lactamase superfamily domain Acfer_0373 PF03466 LysR substrate binding domain Acfer_0373 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0374 PF02632 BioY family Acfer_0376 PF13193 AMP-binding enzyme C-terminal domain Acfer_0376 PF00501 AMP-binding enzyme Acfer_0379 PF01980 tRNA-methyltransferase O Acfer_0379 PF18389 TrmO C-terminal domain Acfer_0380 PF03895 YadA-like membrane anchor domain Acfer_0380 PF05662 Coiled stalk of trimeric autotransporter adhesin Acfer_0380 PF13018 Extended Signal Peptide of Type V secretion system Acfer_0380 PF05658 Head domain of trimeric autotransporter adhesin Acfer_0384 PF04074 YhcH/YjgK/YiaL Acfer_0385 PF07715 TonB-dependent Receptor Plug Domain Acfer_0385 PF00593 TonB dependent receptor Acfer_0390 PF01022 Bacterial regulatory protein, arsR family Acfer_0393 PF08279 HTH domain Acfer_0393 PF02829 3H domain Acfer_0396 PF00092 von Willebrand factor type A domain Acfer_0397 PF00133 tRNA synthetases class I (I, L, M and V) Acfer_0397 PF10458 Valyl tRNA synthetase tRNA binding arm Acfer_0397 PF08264 Anticodon-binding domain of tRNA Acfer_0398 PF08245 Mur ligase middle domain Acfer_0398 PF02875 Mur ligase family, glutamate ligase domain Acfer_0401 PF00483 Nucleotidyl transferase Acfer_0402 PF00343 Carbohydrate phosphorylase Acfer_0403 PF02806 Alpha amylase, C-terminal all-beta domain Acfer_0403 PF00128 Alpha amylase, catalytic domain Acfer_0403 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Acfer_0404 PF00534 Glycosyl transferases group 1 Acfer_0404 PF08323 Starch synthase catalytic domain Acfer_0405 PF00128 Alpha amylase, catalytic domain Acfer_0405 PF02903 Alpha amylase, N-terminal ig-like domain Acfer_0406 PF03600 Citrate transporter Acfer_0407 PF03600 Citrate transporter Acfer_0408 PF04223 Citrate lyase, alpha subunit (CitF) Acfer_0409 PF03328 HpcH/HpaI aldolase/citrate lyase family Acfer_0410 PF06857 Malonate decarboxylase delta subunit (MdcD) Acfer_0411 PF03466 LysR substrate binding domain Acfer_0411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0412 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Acfer_0413 PF03601 Conserved hypothetical protein 698 Acfer_0415 PF03313 Serine dehydratase alpha chain Acfer_0416 PF03315 Serine dehydratase beta chain Acfer_0416 PF01842 ACT domain Acfer_0417 PF00375 Sodium:dicarboxylate symporter family Acfer_0418 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0418 PF03466 LysR substrate binding domain Acfer_0419 PF01197 Ribosomal protein L31 Acfer_0420 PF07136 Protein of unknown function (DUF1385) Acfer_0421 PF03462 PCRF domain Acfer_0421 PF00472 RF-1 domain Acfer_0422 PF17827 PrmC N-terminal domain Acfer_0422 PF05175 Methyltransferase small domain Acfer_0423 PF03481 Putative GTP-binding controlling metal-binding Acfer_0423 PF01300 Telomere recombination Acfer_0424 PF02502 Ribose/Galactose Isomerase Acfer_0425 PF04260 Protein of unknown function (DUF436) Acfer_0426 PF00464 Serine hydroxymethyltransferase Acfer_0428 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Acfer_0435 PF00582 Universal stress protein family Acfer_0436 PF00582 Universal stress protein family Acfer_0437 PF00582 Universal stress protein family Acfer_0438 PF00582 Universal stress protein family Acfer_0439 PF00582 Universal stress protein family Acfer_0440 PF03553 Na+/H+ antiporter family Acfer_0441 PF01235 Sodium:alanine symporter family Acfer_0442 PF00155 Aminotransferase class I and II Acfer_0443 PF01367 5'-3' exonuclease, C-terminal SAM fold Acfer_0443 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Acfer_0443 PF00476 DNA polymerase family A Acfer_0444 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Acfer_0444 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Acfer_0444 PF06827 Zinc finger found in FPG and IleRS Acfer_0445 PF01121 Dephospho-CoA kinase Acfer_0448 PF02447 GntP family permease Acfer_0449 PF00005 ABC transporter Acfer_0450 PF01458 Uncharacterized protein family (UPF0051) Acfer_0452 PF00266 Aminotransferase class-V Acfer_0453 PF01592 NifU-like N terminal domain Acfer_0454 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Acfer_0454 PF01138 3' exoribonuclease family, domain 1 Acfer_0454 PF03725 3' exoribonuclease family, domain 2 Acfer_0454 PF00575 S1 RNA binding domain Acfer_0454 PF00013 KH domain Acfer_0455 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Acfer_0457 PF00830 Ribosomal L28 family Acfer_0458 PF00270 DEAD/DEAH box helicase Acfer_0458 PF17191 RecG wedge domain Acfer_0458 PF00271 Helicase conserved C-terminal domain Acfer_0459 PF03144 Elongation factor Tu domain 2 Acfer_0459 PF00009 Elongation factor Tu GTP binding domain Acfer_0459 PF03764 Elongation factor G, domain IV Acfer_0459 PF14492 Elongation Factor G, domain II Acfer_0459 PF00679 Elongation factor G C-terminus Acfer_0461 PF02780 Transketolase, C-terminal domain Acfer_0461 PF02779 Transketolase, pyrimidine binding domain Acfer_0461 PF00456 Transketolase, thiamine diphosphate binding domain Acfer_0462 PF08543 Phosphomethylpyrimidine kinase Acfer_0463 PF02581 Thiamine monophosphate synthase Acfer_0465 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Acfer_0466 PF02978 Signal peptide binding domain Acfer_0466 PF00448 SRP54-type protein, GTPase domain Acfer_0466 PF02881 SRP54-type protein, helical bundle domain Acfer_0467 PF00886 Ribosomal protein S16 Acfer_0470 PF05239 PRC-barrel domain Acfer_0470 PF01782 RimM N-terminal domain Acfer_0471 PF01746 tRNA (Guanine-1)-methyltransferase Acfer_0472 PF01245 Ribosomal protein L19 Acfer_0473 PF10502 Signal peptidase, peptidase S26 Acfer_0474 PF01926 50S ribosome-binding GTPase Acfer_0475 PF01351 Ribonuclease HII Acfer_0476 PF02021 Uncharacterised protein family UPF0102 Acfer_0477 PF13335 Magnesium chelatase, subunit ChlI C-terminal Acfer_0477 PF01078 Magnesium chelatase, subunit ChlI Acfer_0478 PF01478 Type IV leader peptidase family Acfer_0478 PF06750 Bacterial Peptidase A24 N-terminal domain Acfer_0480 PF00155 Aminotransferase class I and II Acfer_0481 PF00485 Phosphoribulokinase / Uridine kinase family Acfer_0482 PF00155 Aminotransferase class I and II Acfer_0483 PF00270 DEAD/DEAH box helicase Acfer_0483 PF00271 Helicase conserved C-terminal domain Acfer_0484 PF00749 tRNA synthetases class I (E and Q), catalytic domain Acfer_0485 PF00480 ROK family Acfer_0486 PF00572 Ribosomal protein L13 Acfer_0488 PF01964 Radical SAM ThiC family Acfer_0489 PF10371 Domain of unknown function Acfer_0489 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Acfer_0489 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Acfer_0489 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Acfer_0489 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Acfer_0490 PF02690 Na+/Pi-cotransporter Acfer_0491 PF03641 Possible lysine decarboxylase Acfer_0492 PF00535 Glycosyl transferase family 2 Acfer_0493 PF01501 Glycosyl transferase family 8 Acfer_0495 PF00535 Glycosyl transferase family 2 Acfer_0497 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Acfer_0497 PF17191 RecG wedge domain Acfer_0497 PF00270 DEAD/DEAH box helicase Acfer_0499 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Acfer_0499 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Acfer_0500 PF01370 NAD dependent epimerase/dehydratase family Acfer_0501 PF00795 Carbon-nitrogen hydrolase Acfer_0502 PF01235 Sodium:alanine symporter family Acfer_0503 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Acfer_0503 PF05698 Bacterial trigger factor protein (TF) C-terminus Acfer_0503 PF05697 Bacterial trigger factor protein (TF) Acfer_0504 PF00574 Clp protease Acfer_0505 PF07724 AAA domain (Cdc48 subfamily) Acfer_0505 PF06689 ClpX C4-type zinc finger Acfer_0505 PF10431 C-terminal, D2-small domain, of ClpB protein Acfer_0506 PF05362 Lon protease (S16) C-terminal proteolytic domain Acfer_0506 PF00004 ATPase family associated with various cellular activities (AAA) Acfer_0506 PF02190 ATP-dependent protease La (LON) substrate-binding domain Acfer_0507 PF01926 50S ribosome-binding GTPase Acfer_0508 PF00293 NUDIX domain Acfer_0509 PF00263 Bacterial type II and III secretion system protein Acfer_0509 PF03958 Bacterial type II/III secretion system short domain Acfer_0511 PF00437 Type II/IV secretion system protein Acfer_0512 PF03458 UPF0126 domain Acfer_0513 PF04461 Protein of unknown function (DUF520) Acfer_0515 PF12344 Ultra-violet resistance protein B Acfer_0515 PF02151 UvrB/uvrC motif Acfer_0515 PF17757 UvrB interaction domain Acfer_0515 PF00271 Helicase conserved C-terminal domain Acfer_0515 PF04851 Type III restriction enzyme, res subunit Acfer_0516 PF17760 UvrA interaction domain Acfer_0516 PF17755 UvrA DNA-binding domain Acfer_0517 PF02151 UvrB/uvrC motif Acfer_0517 PF01541 GIY-YIG catalytic domain Acfer_0517 PF08459 UvrC Helix-hairpin-helix N-terminal Acfer_0518 PF00301 Rubredoxin Acfer_0519 PF03466 LysR substrate binding domain Acfer_0519 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0520 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Acfer_0521 PF00465 Iron-containing alcohol dehydrogenase Acfer_0522 PF12706 Beta-lactamase superfamily domain Acfer_0523 PF03466 LysR substrate binding domain Acfer_0523 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0524 PF00248 Aldo/keto reductase family Acfer_0525 PF00248 Aldo/keto reductase family Acfer_0532 PF02416 mttA/Hcf106 family Acfer_0533 PF00902 Sec-independent protein translocase protein (TatC) Acfer_0537 PF02627 Carboxymuconolactone decarboxylase family Acfer_0539 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0539 PF03466 LysR substrate binding domain Acfer_0543 PF03668 P-loop ATPase protein family Acfer_0544 PF01933 Uncharacterised protein family UPF0052 Acfer_0545 PF10298 WhiA N-terminal LAGLIDADG-like domain Acfer_0545 PF14527 WhiA LAGLIDADG-like domain Acfer_0545 PF02650 WhiA C-terminal HTH domain Acfer_0549 PF00378 Enoyl-CoA hydratase/isomerase Acfer_0551 PF00753 Metallo-beta-lactamase superfamily Acfer_0551 PF10996 Beta-Casp domain Acfer_0551 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Acfer_0554 PF14579 Helix-hairpin-helix motif Acfer_0554 PF07733 Bacterial DNA polymerase III alpha NTPase domain Acfer_0554 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Acfer_0554 PF02811 PHP domain Acfer_0554 PF01336 OB-fold nucleic acid binding domain Acfer_0555 PF01012 Electron transfer flavoprotein domain Acfer_0556 PF00766 Electron transfer flavoprotein FAD-binding domain Acfer_0556 PF01012 Electron transfer flavoprotein domain Acfer_0557 PF02887 Pyruvate kinase, alpha/beta domain Acfer_0557 PF00391 PEP-utilising enzyme, mobile domain Acfer_0557 PF00224 Pyruvate kinase, barrel domain Acfer_0560 PF02254 TrkA-N domain Acfer_0560 PF02080 TrkA-C domain Acfer_0561 PF02386 Cation transport protein Acfer_0565 PF13614 AAA domain Acfer_0566 PF02397 Bacterial sugar transferase Acfer_0567 PF00535 Glycosyl transferase family 2 Acfer_0569 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Acfer_0569 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Acfer_0569 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Acfer_0570 PF13439 Glycosyltransferase Family 4 Acfer_0570 PF00534 Glycosyl transferases group 1 Acfer_0572 PF00132 Bacterial transferase hexapeptide (six repeats) Acfer_0573 PF00535 Glycosyl transferase family 2 Acfer_0576 PF00483 Nucleotidyl transferase Acfer_0578 PF16363 GDP-mannose 4,6 dehydratase Acfer_0579 PF04321 RmlD substrate binding domain Acfer_0580 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Acfer_0593 PF00342 Phosphoglucose isomerase Acfer_0594 PF00905 Penicillin binding protein transpeptidase domain Acfer_0594 PF00912 Transglycosylase Acfer_0595 PF00696 Amino acid kinase family Acfer_0596 PF00202 Aminotransferase class-III Acfer_0597 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Acfer_0597 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Acfer_0598 PF00764 Arginosuccinate synthase Acfer_0599 PF00206 Lyase Acfer_0599 PF14698 Argininosuccinate lyase C-terminal Acfer_0600 PF07687 Peptidase dimerisation domain Acfer_0600 PF01546 Peptidase family M20/M25/M40 Acfer_0601 PF02457 DisA bacterial checkpoint controller nucleotide-binding Acfer_0604 PF01368 DHH family Acfer_0604 PF02833 DHHA2 domain Acfer_0606 PF00180 Isocitrate/isopropylmalate dehydrogenase Acfer_0612 PF03313 Serine dehydratase alpha chain Acfer_0613 PF00860 Permease family Acfer_0614 PF13361 UvrD-like helicase C-terminal domain Acfer_0614 PF00580 UvrD/REP helicase N-terminal domain Acfer_0615 PF03120 NAD-dependent DNA ligase OB-fold domain Acfer_0615 PF12826 Helix-hairpin-helix motif Acfer_0615 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Acfer_0615 PF00533 BRCA1 C Terminus (BRCT) domain Acfer_0615 PF01653 NAD-dependent DNA ligase adenylation domain Acfer_0616 PF02554 Carbon starvation protein CstA Acfer_0616 PF13722 5TM C-terminal transporter carbon starvation CstA Acfer_0618 PF01557 Fumarylacetoacetate (FAA) hydrolase family Acfer_0619 PF02562 PhoH-like protein Acfer_0620 PF02130 Uncharacterized protein family UPF0054 Acfer_0621 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Acfer_0622 PF07650 KH domain Acfer_0622 PF01926 50S ribosome-binding GTPase Acfer_0623 PF01595 Cyclin M transmembrane N-terminal domain Acfer_0623 PF00571 CBS domain Acfer_0623 PF03471 Transporter associated domain Acfer_0624 PF11967 Recombination protein O N terminal Acfer_0624 PF02565 Recombination protein O C terminal Acfer_0626 PF03372 Endonuclease/Exonuclease/phosphatase family Acfer_0628 PF03466 LysR substrate binding domain Acfer_0628 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0629 PF04303 PrpF protein Acfer_0631 PF00694 Aconitase C-terminal domain Acfer_0631 PF00330 Aconitase family (aconitate hydratase) Acfer_0632 PF01790 Prolipoprotein diacylglyceryl transferase Acfer_0635 PF01276 Orn/Lys/Arg decarboxylase, major domain Acfer_0635 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Acfer_0636 PF02223 Thymidylate kinase Acfer_0637 PF09115 DNA polymerase III, delta subunit, C terminal Acfer_0638 PF04468 PSP1 C-terminal conserved region Acfer_0639 PF05175 Methyltransferase small domain Acfer_0640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Acfer_0641 PF03466 LysR substrate binding domain Acfer_0641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0642 PF03601 Conserved hypothetical protein 698 Acfer_0643 PF01554 MatE Acfer_0645 PF00578 AhpC/TSA family Acfer_0646 PF03883 Peroxide stress protein YaaA Acfer_0647 PF00704 Glycosyl hydrolases family 18 Acfer_0648 PF00497 Bacterial extracellular solute-binding proteins, family 3 Acfer_0649 PF00497 Bacterial extracellular solute-binding proteins, family 3 Acfer_0650 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_0651 PF00005 ABC transporter Acfer_0652 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Acfer_0652 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Acfer_0653 PF02810 SEC-C motif Acfer_0653 PF07516 SecA Wing and Scaffold domain Acfer_0653 PF01043 SecA preprotein cross-linking domain Acfer_0653 PF07517 SecA DEAD-like domain Acfer_0654 PF00472 RF-1 domain Acfer_0654 PF03462 PCRF domain Acfer_0657 PF00005 ABC transporter Acfer_0658 PF18075 FtsX extracellular domain Acfer_0658 PF02687 FtsX-like permease family Acfer_0659 PF01551 Peptidase family M23 Acfer_0660 PF03572 Peptidase family S41 Acfer_0660 PF13180 PDZ domain Acfer_0661 PF00512 His Kinase A (phospho-acceptor) domain Acfer_0661 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0661 PF01627 Hpt domain Acfer_0661 PF00072 Response regulator receiver domain Acfer_0662 PF01261 Xylose isomerase-like TIM barrel Acfer_0663 PF09515 Thiamine transporter protein (Thia_YuaJ) Acfer_0664 PF00707 Translation initiation factor IF-3, C-terminal domain Acfer_0664 PF05198 Translation initiation factor IF-3, N-terminal domain Acfer_0665 PF01632 Ribosomal protein L35 Acfer_0668 PF00312 Ribosomal protein S15 Acfer_0669 PF00860 Permease family Acfer_0670 PF00958 GMP synthase C terminal domain Acfer_0670 PF00117 Glutamine amidotransferase class-I Acfer_0674 PF01022 Bacterial regulatory protein, arsR family Acfer_0676 PF02417 Chromate transporter Acfer_0677 PF01554 MatE Acfer_0678 PF07687 Peptidase dimerisation domain Acfer_0678 PF01546 Peptidase family M20/M25/M40 Acfer_0681 PF01872 RibD C-terminal domain Acfer_0683 PF00005 ABC transporter Acfer_0683 PF17755 UvrA DNA-binding domain Acfer_0683 PF17760 UvrA interaction domain Acfer_0684 PF01814 Hemerythrin HHE cation binding domain Acfer_0684 PF04405 Domain of Unknown function (DUF542) Acfer_0686 PF03707 Bacterial signalling protein N terminal repeat Acfer_0686 PF00990 Diguanylate cyclase, GGDEF domain Acfer_0686 PF00563 EAL domain Acfer_0687 PF02082 Transcriptional regulator Acfer_0691 PF01725 Ham1 family Acfer_0693 PF00390 Malic enzyme, N-terminal domain Acfer_0693 PF03949 Malic enzyme, NAD binding domain Acfer_0694 PF03180 NLPA lipoprotein Acfer_0699 PF00939 Sodium:sulfate symporter transmembrane region Acfer_0700 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Acfer_0700 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Acfer_0700 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Acfer_0701 PF04055 Radical SAM superfamily Acfer_0701 PF06969 HemN C-terminal domain Acfer_0702 PF01628 HrcA protein C terminal domain Acfer_0703 PF01025 GrpE Acfer_0704 PF00012 Hsp70 protein Acfer_0705 PF00684 DnaJ central domain Acfer_0705 PF01556 DnaJ C terminal domain Acfer_0705 PF00226 DnaJ domain Acfer_0710 PF04452 RNA methyltransferase Acfer_0711 PF01938 TRAM domain Acfer_0711 PF04055 Radical SAM superfamily Acfer_0711 PF00919 Uncharacterized protein family UPF0004 Acfer_0712 PF01230 HIT domain Acfer_0713 PF01165 Ribosomal protein S21 Acfer_0714 PF09424 Yqey-like protein Acfer_0715 PF00155 Aminotransferase class I and II Acfer_0716 PF01435 Peptidase family M48 Acfer_0717 PF02559 CarD-like/TRCF domain Acfer_0719 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Acfer_0719 PF02542 YgbB family Acfer_0720 PF00749 tRNA synthetases class I (E and Q), catalytic domain Acfer_0721 PF09190 DALR domain Acfer_0721 PF01406 tRNA synthetases class I (C) catalytic domain Acfer_0722 PF00636 Ribonuclease III domain Acfer_0723 PF02511 Thymidylate synthase complementing protein Acfer_0726 PF02397 Bacterial sugar transferase Acfer_0731 PF03275 UDP-galactopyranose mutase Acfer_0740 PF13333 Integrase core domain Acfer_0740 PF13276 HTH-like domain Acfer_0740 PF00665 Integrase core domain Acfer_0743 PF04991 LicD family Acfer_0744 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Acfer_0745 PF16363 GDP-mannose 4,6 dehydratase Acfer_0746 PF01501 Glycosyl transferase family 8 Acfer_0746 PF00535 Glycosyl transferase family 2 Acfer_0747 PF00535 Glycosyl transferase family 2 Acfer_0748 PF01501 Glycosyl transferase family 8 Acfer_0748 PF00535 Glycosyl transferase family 2 Acfer_0757 PF09704 CRISPR-associated protein (Cas_Cas5) Acfer_0761 PF01867 CRISPR associated protein Cas1 Acfer_0762 PF09827 CRISPR associated protein Cas2 Acfer_0767 PF16658 Class II release factor RF3, C-terminal domain Acfer_0767 PF03144 Elongation factor Tu domain 2 Acfer_0767 PF00009 Elongation factor Tu GTP binding domain Acfer_0768 PF03808 Glycosyl transferase WecB/TagA/CpsF family Acfer_0769 PF02666 Phosphatidylserine decarboxylase Acfer_0772 PF00690 Cation transporter/ATPase, N-terminus Acfer_0772 PF00689 Cation transporting ATPase, C-terminus Acfer_0775 PF01758 Sodium Bile acid symporter family Acfer_0777 PF00005 ABC transporter Acfer_0778 PF00497 Bacterial extracellular solute-binding proteins, family 3 Acfer_0779 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_0780 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_0783 PF00817 impB/mucB/samB family Acfer_0783 PF11799 impB/mucB/samB family C-terminal domain Acfer_0783 PF11798 IMS family HHH motif Acfer_0785 PF01118 Semialdehyde dehydrogenase, NAD binding domain Acfer_0786 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Acfer_0786 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Acfer_0788 PF04055 Radical SAM superfamily Acfer_0789 PF01228 Glycine radical Acfer_0789 PF02901 Pyruvate formate lyase-like Acfer_0790 PF03180 NLPA lipoprotein Acfer_0791 PF01546 Peptidase family M20/M25/M40 Acfer_0791 PF07687 Peptidase dimerisation domain Acfer_0792 PF00849 RNA pseudouridylate synthase Acfer_0792 PF01479 S4 domain Acfer_0799 PF05230 MASE2 domain Acfer_0799 PF00990 Diguanylate cyclase, GGDEF domain Acfer_0802 PF00360 Phytochrome region Acfer_0802 PF00990 Diguanylate cyclase, GGDEF domain Acfer_0802 PF01590 GAF domain Acfer_0802 PF00563 EAL domain Acfer_0804 PF02110 Hydroxyethylthiazole kinase family Acfer_0805 PF03806 AbgT putative transporter family Acfer_0806 PF01979 Amidohydrolase family Acfer_0807 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Acfer_0807 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acfer_0808 PF03577 Peptidase family C69 Acfer_0810 PF00381 PTS HPr component phosphorylation site Acfer_0811 PF02896 PEP-utilising enzyme, TIM barrel domain Acfer_0811 PF00391 PEP-utilising enzyme, mobile domain Acfer_0811 PF05524 PEP-utilising enzyme, N-terminal Acfer_0813 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Acfer_0814 PF01784 NIF3 (NGG1p interacting factor 3) Acfer_0816 PF00085 Thioredoxin Acfer_0817 PF00535 Glycosyl transferase family 2 Acfer_0818 PF08239 Bacterial SH3 domain Acfer_0818 PF01476 LysM domain Acfer_0818 PF00877 NlpC/P60 family Acfer_0820 PF00486 Transcriptional regulatory protein, C terminal Acfer_0820 PF00072 Response regulator receiver domain Acfer_0821 PF18698 Histidine kinase sensor domain Acfer_0821 PF00989 PAS fold Acfer_0821 PF00672 HAMP domain Acfer_0821 PF00512 His Kinase A (phospho-acceptor) domain Acfer_0821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0823 PF06133 Control of competence regulator ComK, YlbF/YmcA Acfer_0824 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Acfer_0824 PF01565 FAD binding domain Acfer_0825 PF00892 EamA-like transporter family Acfer_0826 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Acfer_0827 PF01741 Large-conductance mechanosensitive channel, MscL Acfer_0828 PF00579 tRNA synthetases class I (W and Y) Acfer_0829 PF00501 AMP-binding enzyme Acfer_0829 PF13193 AMP-binding enzyme C-terminal domain Acfer_0831 PF07730 Histidine kinase Acfer_0831 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Acfer_0831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0831 PF00672 HAMP domain Acfer_0832 PF00196 Bacterial regulatory proteins, luxR family Acfer_0832 PF00072 Response regulator receiver domain Acfer_0834 PF02872 5'-nucleotidase, C-terminal domain Acfer_0834 PF00149 Calcineurin-like phosphoesterase Acfer_0843 PF03780 Asp23 family, cell envelope-related function Acfer_0846 PF01029 NusB family Acfer_0847 PF00814 Glycoprotease family Acfer_0848 PF02601 Exonuclease VII, large subunit Acfer_0848 PF13742 OB-fold nucleic acid binding domain Acfer_0849 PF02609 Exonuclease VII small subunit Acfer_0850 PF00348 Polyprenyl synthetase Acfer_0851 PF02779 Transketolase, pyrimidine binding domain Acfer_0851 PF02780 Transketolase, C-terminal domain Acfer_0851 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Acfer_0852 PF01479 S4 domain Acfer_0852 PF01728 FtsJ-like methyltransferase Acfer_0853 PF01513 ATP-NAD kinase Acfer_0854 PF02863 Arginine repressor, C-terminal domain Acfer_0854 PF01316 Arginine repressor, DNA binding domain Acfer_0855 PF02463 RecF/RecN/SMC N terminal domain Acfer_0856 PF00293 NUDIX domain Acfer_0857 PF04232 Stage V sporulation protein S (SpoVS) Acfer_0859 PF00005 ABC transporter Acfer_0860 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_0862 PF01970 Tripartite tricarboxylate transporter TctA family Acfer_0865 PF00465 Iron-containing alcohol dehydrogenase Acfer_0866 PF01554 MatE Acfer_0868 PF13426 PAS domain Acfer_0868 PF00563 EAL domain Acfer_0868 PF00990 Diguanylate cyclase, GGDEF domain Acfer_0869 PF00301 Rubredoxin Acfer_0869 PF00258 Flavodoxin Acfer_0869 PF00753 Metallo-beta-lactamase superfamily Acfer_0874 PF17910 FeoB cytosolic helical domain Acfer_0874 PF07670 Nucleoside recognition Acfer_0874 PF07664 Ferrous iron transport protein B C terminus Acfer_0874 PF02421 Ferrous iron transport protein B Acfer_0876 PF00403 Heavy-metal-associated domain Acfer_0882 PF00005 ABC transporter Acfer_0882 PF00664 ABC transporter transmembrane region Acfer_0883 PF00664 ABC transporter transmembrane region Acfer_0883 PF00005 ABC transporter Acfer_0885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Acfer_0885 PF01409 tRNA synthetases class II core domain (F) Acfer_0886 PF01588 Putative tRNA binding domain Acfer_0886 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Acfer_0886 PF03147 Ferredoxin-fold anticodon binding domain Acfer_0886 PF03484 tRNA synthetase B5 domain Acfer_0886 PF03483 B3/4 domain Acfer_0888 PF00107 Zinc-binding dehydrogenase Acfer_0888 PF08240 Alcohol dehydrogenase GroES-like domain Acfer_0889 PF07683 Cobalamin synthesis protein cobW C-terminal domain Acfer_0889 PF02492 CobW/HypB/UreG, nucleotide-binding domain Acfer_0892 PF05848 CtsR N-terminal HTH domain Acfer_0892 PF17727 CtsR C-terminal dimerization domain Acfer_0893 PF18073 Rubredoxin metal binding domain Acfer_0894 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Acfer_0894 PF01411 tRNA synthetases class II (A) Acfer_0894 PF02272 DHHA1 domain Acfer_0896 PF06135 IreB regulatory phosphoprotein Acfer_0897 PF03652 Holliday junction resolvase Acfer_0898 PF06949 Protein of unknown function (DUF1292) Acfer_0899 PF02618 YceG-like family Acfer_0901 PF01321 Creatinase/Prolidase N-terminal domain Acfer_0901 PF00557 Metallopeptidase family M24 Acfer_0902 PF01132 Elongation factor P (EF-P) OB domain Acfer_0902 PF08207 Elongation factor P (EF-P) KOW-like domain Acfer_0902 PF09285 Elongation factor P, C-terminal Acfer_0903 PF00300 Histidine phosphatase superfamily (branch 1) Acfer_0906 PF02769 AIR synthase related protein, C-terminal domain Acfer_0906 PF00586 AIR synthase related protein, N-terminal domain Acfer_0906 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Acfer_0907 PF08367 Peptidase M16C associated Acfer_0907 PF00675 Insulinase (Peptidase family M16) Acfer_0907 PF05193 Peptidase M16 inactive domain Acfer_0908 PF00793 DAHP synthetase I family Acfer_0911 PF13291 ACT domain Acfer_0911 PF02824 TGS domain Acfer_0911 PF04607 Region found in RelA / SpoT proteins Acfer_0912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0912 PF03466 LysR substrate binding domain Acfer_0913 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acfer_0913 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Acfer_0914 PF01371 Trp repressor protein Acfer_0915 PF13393 Histidyl-tRNA synthetase Acfer_0916 PF01634 ATP phosphoribosyltransferase Acfer_0917 PF00815 Histidinol dehydrogenase Acfer_0918 PF00155 Aminotransferase class I and II Acfer_0919 PF00475 Imidazoleglycerol-phosphate dehydratase Acfer_0920 PF00117 Glutamine amidotransferase class-I Acfer_0921 PF00977 Histidine biosynthesis protein Acfer_0922 PF00977 Histidine biosynthesis protein Acfer_0923 PF01502 Phosphoribosyl-AMP cyclohydrolase Acfer_0923 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Acfer_0924 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Acfer_0924 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Acfer_0924 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acfer_0924 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Acfer_0925 PF01380 SIS domain Acfer_0926 PF02445 Quinolinate synthetase A protein Acfer_0927 PF00890 FAD binding domain Acfer_0927 PF02910 Fumarate reductase flavoprotein C-term Acfer_0928 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Acfer_0928 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Acfer_0929 PF04198 Putative sugar-binding domain Acfer_0930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Acfer_0930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Acfer_0931 PF00121 Triosephosphate isomerase Acfer_0931 PF00162 Phosphoglycerate kinase Acfer_0932 PF01676 Metalloenzyme superfamily Acfer_0932 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Acfer_0933 PF00113 Enolase, C-terminal TIM barrel domain Acfer_0933 PF03952 Enolase, N-terminal domain Acfer_0934 PF01966 HD domain Acfer_0935 PF04607 Region found in RelA / SpoT proteins Acfer_0936 PF00486 Transcriptional regulatory protein, C terminal Acfer_0936 PF00072 Response regulator receiver domain Acfer_0937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acfer_0937 PF00512 His Kinase A (phospho-acceptor) domain Acfer_0938 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Acfer_0938 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Acfer_0942 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Acfer_0944 PF07690 Major Facilitator Superfamily Acfer_0950 PF00795 Carbon-nitrogen hydrolase Acfer_0952 PF03466 LysR substrate binding domain Acfer_0952 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0957 PF03358 NADPH-dependent FMN reductase Acfer_0959 PF01327 Polypeptide deformylase Acfer_0960 PF00440 Bacterial regulatory proteins, tetR family Acfer_0961 PF01323 DSBA-like thioredoxin domain Acfer_0962 PF00753 Metallo-beta-lactamase superfamily Acfer_0965 PF18089 DAPG hydrolase PhiG domain Acfer_0966 PF03466 LysR substrate binding domain Acfer_0966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_0971 PF03840 Preprotein translocase SecG subunit Acfer_0972 PF12146 Serine aminopeptidase, S33 Acfer_0974 PF08206 Ribonuclease B OB domain Acfer_0974 PF00773 RNB domain Acfer_0974 PF17876 Cold shock domain Acfer_0974 PF00575 S1 RNA binding domain Acfer_0975 PF01668 SmpB protein Acfer_0976 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acfer_0976 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Acfer_0977 PF03976 Polyphosphate kinase 2 (PPK2) Acfer_0979 PF01168 Alanine racemase, N-terminal domain Acfer_0981 PF14748 Pyrroline-5-carboxylate reductase dimerisation Acfer_0981 PF03807 NADP oxidoreductase coenzyme F420-dependent Acfer_0985 PF01012 Electron transfer flavoprotein domain Acfer_0986 PF00766 Electron transfer flavoprotein FAD-binding domain Acfer_0986 PF01012 Electron transfer flavoprotein domain Acfer_0987 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Acfer_0987 PF02811 PHP domain Acfer_0987 PF14579 Helix-hairpin-helix motif Acfer_0987 PF11490 DNA polymerase III polC-type N-terminus II Acfer_0987 PF01336 OB-fold nucleic acid binding domain Acfer_0987 PF00929 Exonuclease Acfer_0987 PF14480 DNA polymerase III polC-type N-terminus I Acfer_0987 PF07733 Bacterial DNA polymerase III alpha NTPase domain Acfer_0989 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Acfer_0989 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Acfer_0989 PF02824 TGS domain Acfer_0989 PF03129 Anticodon binding domain Acfer_0990 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain Acfer_0990 PF01113 Dihydrodipicolinate reductase, N-terminus Acfer_0994 PF02915 Rubrerythrin Acfer_0995 PF02463 RecF/RecN/SMC N terminal domain Acfer_0997 PF00440 Bacterial regulatory proteins, tetR family Acfer_0997 PF17932 Tetracyclin repressor-like, C-terminal domain Acfer_0998 PF01116 Fructose-bisphosphate aldolase class-II Acfer_0999 PF00849 RNA pseudouridylate synthase Acfer_1000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Acfer_1002 PF02540 NAD synthase Acfer_1003 PF00731 AIR carboxylase Acfer_1004 PF01969 Protein of unknown function DUF111 Acfer_1005 PF13190 PDGLE domain Acfer_1005 PF01891 Cobalt uptake substrate-specific transmembrane region Acfer_1007 PF00005 ABC transporter Acfer_1009 PF00578 AhpC/TSA family Acfer_1010 PF02683 Cytochrome C biogenesis protein transmembrane region Acfer_1011 PF00375 Sodium:dicarboxylate symporter family Acfer_1012 PF00717 Peptidase S24-like Acfer_1012 PF01726 LexA DNA binding domain Acfer_1013 PF06838 Methionine gamma-lyase Acfer_1014 PF01926 50S ribosome-binding GTPase Acfer_1014 PF13167 GTP-binding GTPase N-terminal Acfer_1014 PF16360 GTP-binding GTPase Middle Region Acfer_1015 PF00271 Helicase conserved C-terminal domain Acfer_1015 PF00270 DEAD/DEAH box helicase Acfer_1016 PF00994 Probable molybdopterin binding domain Acfer_1016 PF02464 Competence-damaged protein Acfer_1016 PF18146 Damage-inducible protein CinA KH domain Acfer_1017 PF04055 Radical SAM superfamily Acfer_1017 PF00919 Uncharacterized protein family UPF0004 Acfer_1017 PF18693 TRAM domain Acfer_1018 PF13464 Domain of unknown function (DUF4115) Acfer_1019 PF01580 FtsK/SpoIIIE family Acfer_1019 PF09397 Ftsk gamma domain Acfer_1019 PF17854 FtsK alpha domain Acfer_1020 PF00753 Metallo-beta-lactamase superfamily Acfer_1020 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Acfer_1020 PF17770 Ribonuclease J C-terminal domain Acfer_1021 PF16868 NMT1-like family Acfer_1022 PF16363 GDP-mannose 4,6 dehydratase Acfer_1024 PF01351 Ribonuclease HII Acfer_1024 PF11858 Domain of unknown function (DUF3378) Acfer_1026 PF02811 PHP domain Acfer_1029 PF07690 Major Facilitator Superfamily Acfer_1033 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Acfer_1033 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Acfer_1034 PF00294 pfkB family carbohydrate kinase Acfer_1035 PF04794 YdjC-like protein Acfer_1036 PF12822 ECF transporter, substrate-specific component Acfer_1037 PF00056 lactate/malate dehydrogenase, NAD binding domain Acfer_1037 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Acfer_1038 PF02127 Aminopeptidase I zinc metalloprotease (M18) Acfer_1039 PF13520 Amino acid permease Acfer_1040 PF03051 Peptidase C1-like family Acfer_1044 PF00005 ABC transporter Acfer_1044 PF00664 ABC transporter transmembrane region Acfer_1045 PF00664 ABC transporter transmembrane region Acfer_1045 PF00005 ABC transporter Acfer_1046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1046 PF03466 LysR substrate binding domain Acfer_1047 PF01451 Low molecular weight phosphotyrosine protein phosphatase Acfer_1049 PF13276 HTH-like domain Acfer_1049 PF13333 Integrase core domain Acfer_1049 PF00665 Integrase core domain Acfer_1057 PF00589 Phage integrase family Acfer_1057 PF02920 DNA binding domain of tn916 integrase Acfer_1058 PF09035 Excisionase from transposon Tn916 Acfer_1060 PF01556 DnaJ C terminal domain Acfer_1060 PF00684 DnaJ central domain Acfer_1060 PF00226 DnaJ domain Acfer_1068 PF03466 LysR substrate binding domain Acfer_1068 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1070 PF03600 Citrate transporter Acfer_1072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1072 PF03466 LysR substrate binding domain Acfer_1073 PF05973 Phage derived protein Gp49-like (DUF891) Acfer_1080 PF02195 ParB-like nuclease domain Acfer_1100 PF00795 Carbon-nitrogen hydrolase Acfer_1101 PF03401 Tripartite tricarboxylate transporter family receptor Acfer_1102 PF01970 Tripartite tricarboxylate transporter TctA family Acfer_1104 PF07729 FCD domain Acfer_1104 PF00392 Bacterial regulatory proteins, gntR family Acfer_1109 PF00293 NUDIX domain Acfer_1122 PF00589 Phage integrase family Acfer_1122 PF02920 DNA binding domain of tn916 integrase Acfer_1123 PF09035 Excisionase from transposon Tn916 Acfer_1125 PF01520 N-acetylmuramoyl-L-alanine amidase Acfer_1150 PF00230 Major intrinsic protein Acfer_1151 PF13018 Extended Signal Peptide of Type V secretion system Acfer_1151 PF05662 Coiled stalk of trimeric autotransporter adhesin Acfer_1151 PF05658 Head domain of trimeric autotransporter adhesin Acfer_1151 PF03895 YadA-like membrane anchor domain Acfer_1160 PF13276 HTH-like domain Acfer_1160 PF00665 Integrase core domain Acfer_1160 PF13333 Integrase core domain Acfer_1161 PF05973 Phage derived protein Gp49-like (DUF891) Acfer_1166 PF07282 Putative transposase DNA-binding domain Acfer_1166 PF12323 Helix-turn-helix domain Acfer_1166 PF01385 Probable transposase Acfer_1173 PF18766 SWI2/SNF2 ATPase Acfer_1173 PF12008 Type I restriction and modification enzyme - subunit R C terminal Acfer_1173 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Acfer_1174 PF01420 Type I restriction modification DNA specificity domain Acfer_1175 PF01420 Type I restriction modification DNA specificity domain Acfer_1176 PF12161 HsdM N-terminal domain Acfer_1176 PF02384 N-6 DNA Methylase Acfer_1177 PF01037 Lrp/AsnC ligand binding domain Acfer_1178 PF12706 Beta-lactamase superfamily domain Acfer_1179 PF09383 NIL domain Acfer_1179 PF00005 ABC transporter Acfer_1180 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_1183 PF00437 Type II/IV secretion system protein Acfer_1188 PF01883 Iron-sulfur cluster assembly protein Acfer_1188 PF10609 NUBPL iron-transfer P-loop NTPase Acfer_1189 PF13629 Pilus formation protein N terminal region Acfer_1189 PF04972 BON domain Acfer_1189 PF00263 Bacterial type II and III secretion system protein Acfer_1191 PF01593 Flavin containing amine oxidoreductase Acfer_1193 PF00701 Dihydrodipicolinate synthetase family Acfer_1194 PF00696 Amino acid kinase family Acfer_1194 PF13840 ACT domain Acfer_1195 PF01118 Semialdehyde dehydrogenase, NAD binding domain Acfer_1195 PF02774 Semialdehyde dehydrogenase, dimerisation domain Acfer_1196 PF05173 Dihydrodipicolinate reductase, C-terminus Acfer_1196 PF01113 Dihydrodipicolinate reductase, N-terminus Acfer_1198 PF00692 dUTPase Acfer_1200 PF02581 Thiamine monophosphate synthase Acfer_1201 PF06397 Desulfoferrodoxin, N-terminal domain Acfer_1201 PF01880 Desulfoferrodoxin Acfer_1203 PF03477 ATP cone domain Acfer_1203 PF13597 Anaerobic ribonucleoside-triphosphate reductase Acfer_1205 PF03616 Sodium/glutamate symporter Acfer_1206 PF01435 Peptidase family M48 Acfer_1207 PF00589 Phage integrase family Acfer_1207 PF02899 Phage integrase, N-terminal SAM-like domain Acfer_1208 PF17209 Hfq protein Acfer_1211 PF08676 MutL C terminal dimerisation domain Acfer_1211 PF01119 DNA mismatch repair protein, C-terminal domain Acfer_1215 PF18273 Type III R-M EcoP15I C-terminal domain Acfer_1215 PF01555 DNA methylase Acfer_1217 PF01695 IstB-like ATP binding protein Acfer_1217 PF07319 Primosomal protein DnaI N-terminus Acfer_1224 PF02152 Dihydroneopterin aldolase Acfer_1224 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Acfer_1225 PF00809 Pterin binding enzyme Acfer_1226 PF02649 Type I GTP cyclohydrolase folE2 Acfer_1227 PF01242 6-pyruvoyl tetrahydropterin synthase Acfer_1228 PF00588 SpoU rRNA Methylase family Acfer_1230 PF00474 Sodium:solute symporter family Acfer_1231 PF12706 Beta-lactamase superfamily domain Acfer_1232 PF08544 GHMP kinases C terminal Acfer_1232 PF00288 GHMP kinases N terminal domain Acfer_1233 PF03447 Homoserine dehydrogenase, NAD binding domain Acfer_1233 PF01842 ACT domain Acfer_1233 PF00742 Homoserine dehydrogenase Acfer_1235 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Acfer_1235 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Acfer_1236 PF02660 Glycerol-3-phosphate acyltransferase Acfer_1237 PF01926 50S ribosome-binding GTPase Acfer_1237 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Acfer_1238 PF01070 FMN-dependent dehydrogenase Acfer_1239 PF00575 S1 RNA binding domain Acfer_1239 PF02401 LytB protein Acfer_1241 PF02224 Cytidylate kinase Acfer_1243 PF01479 S4 domain Acfer_1243 PF00849 RNA pseudouridylate synthase Acfer_1244 PF04079 Segregation and condensation complex subunit ScpB Acfer_1245 PF02616 Segregation and condensation protein ScpA Acfer_1246 PF02163 Peptidase family M50 Acfer_1247 PF06018 CodY GAF-like domain Acfer_1247 PF08222 CodY helix-turn-helix domain Acfer_1248 PF00589 Phage integrase family Acfer_1248 PF02899 Phage integrase, N-terminal SAM-like domain Acfer_1250 PF01396 Topoisomerase DNA binding C4 zinc finger Acfer_1250 PF01131 DNA topoisomerase Acfer_1250 PF01751 Toprim domain Acfer_1251 PF17782 DprA winged helix domain Acfer_1251 PF02481 DNA recombination-mediator protein A Acfer_1252 PF10396 GTP-binding protein TrmE N-terminus Acfer_1252 PF12631 MnmE helical domain Acfer_1252 PF01926 50S ribosome-binding GTPase Acfer_1255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Acfer_1260 PF00176 SNF2 family N-terminal domain Acfer_1260 PF00271 Helicase conserved C-terminal domain Acfer_1260 PF12419 SNF2 Helicase protein Acfer_1262 PF00691 OmpA family Acfer_1262 PF13677 Membrane MotB of proton-channel complex MotA/MotB Acfer_1267 PF01554 MatE Acfer_1268 PF00579 tRNA synthetases class I (W and Y) Acfer_1269 PF00375 Sodium:dicarboxylate symporter family Acfer_1270 PF01758 Sodium Bile acid symporter family Acfer_1271 PF00571 CBS domain Acfer_1271 PF01769 Divalent cation transporter Acfer_1271 PF03448 MgtE intracellular N domain Acfer_1273 PF10672 S-adenosylmethionine-dependent methyltransferase Acfer_1273 PF17785 PUA-like domain Acfer_1275 PF00478 IMP dehydrogenase / GMP reductase domain Acfer_1275 PF00571 CBS domain Acfer_1276 PF02843 Phosphoribosylglycinamide synthetase, C domain Acfer_1276 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Acfer_1276 PF02844 Phosphoribosylglycinamide synthetase, N domain Acfer_1277 PF01808 AICARFT/IMPCHase bienzyme Acfer_1277 PF02142 MGS-like domain Acfer_1278 PF00551 Formyl transferase Acfer_1279 PF02769 AIR synthase related protein, C-terminal domain Acfer_1279 PF00586 AIR synthase related protein, N-terminal domain Acfer_1280 PF00156 Phosphoribosyl transferase domain Acfer_1281 PF00731 AIR carboxylase Acfer_1283 PF01713 Smr domain Acfer_1283 PF00488 MutS domain V Acfer_1285 PF00990 Diguanylate cyclase, GGDEF domain Acfer_1285 PF00563 EAL domain Acfer_1285 PF00360 Phytochrome region Acfer_1285 PF01590 GAF domain Acfer_1293 PF08334 Type II secretion system (T2SS), protein G Acfer_1293 PF07963 Prokaryotic N-terminal methylation motif Acfer_1295 PF03477 ATP cone domain Acfer_1296 PF00091 Tubulin/FtsZ family, GTPase domain Acfer_1296 PF12327 FtsZ family, C-terminal domain Acfer_1297 PF06947 Protein of unknown function (DUF1290) Acfer_1298 PF05949 Bacterial protein of unknown function (DUF881) Acfer_1300 PF07478 D-ala D-ala ligase C-terminus Acfer_1300 PF01820 D-ala D-ala ligase N-terminus Acfer_1301 PF02875 Mur ligase family, glutamate ligase domain Acfer_1301 PF01225 Mur ligase family, catalytic domain Acfer_1301 PF08245 Mur ligase middle domain Acfer_1302 PF04101 Glycosyltransferase family 28 C-terminal domain Acfer_1302 PF03033 Glycosyltransferase family 28 N-terminal domain Acfer_1303 PF08245 Mur ligase middle domain Acfer_1303 PF02875 Mur ligase family, glutamate ligase domain Acfer_1304 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Acfer_1304 PF00953 Glycosyl transferase family 4 Acfer_1305 PF08245 Mur ligase middle domain Acfer_1305 PF02875 Mur ligase family, glutamate ligase domain Acfer_1305 PF01225 Mur ligase family, catalytic domain Acfer_1306 PF02875 Mur ligase family, glutamate ligase domain Acfer_1306 PF01225 Mur ligase family, catalytic domain Acfer_1306 PF08245 Mur ligase middle domain Acfer_1308 PF01795 MraW methylase family Acfer_1309 PF02381 MraZ protein, putative antitoxin-like Acfer_1311 PF00156 Phosphoribosyl transferase domain Acfer_1312 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Acfer_1313 PF01180 Dihydroorotate dehydrogenase Acfer_1314 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Acfer_1315 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Acfer_1315 PF02142 MGS-like domain Acfer_1315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Acfer_1316 PF00117 Glutamine amidotransferase class-I Acfer_1316 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Acfer_1317 PF01979 Amidohydrolase family Acfer_1318 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Acfer_1318 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Acfer_1320 PF04851 Type III restriction enzyme, res subunit Acfer_1320 PF00271 Helicase conserved C-terminal domain Acfer_1321 PF07687 Peptidase dimerisation domain Acfer_1321 PF01546 Peptidase family M20/M25/M40 Acfer_1325 PF00691 OmpA family Acfer_1325 PF05736 OprF membrane domain Acfer_1327 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acfer_1327 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Acfer_1328 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Acfer_1328 PF00175 Oxidoreductase NAD-binding domain Acfer_1329 PF01979 Amidohydrolase family Acfer_1330 PF01048 Phosphorylase superfamily Acfer_1331 PF13419 Haloacid dehalogenase-like hydrolase Acfer_1332 PF12705 PD-(D/E)XK nuclease superfamily Acfer_1332 PF00580 UvrD/REP helicase N-terminal domain Acfer_1332 PF13361 UvrD-like helicase C-terminal domain Acfer_1333 PF12705 PD-(D/E)XK nuclease superfamily Acfer_1336 PF01171 PP-loop family Acfer_1338 PF12706 Beta-lactamase superfamily domain Acfer_1340 PF03749 Sugar fermentation stimulation protein RE domain Acfer_1340 PF17746 SfsA N-terminal OB domain Acfer_1341 PF08502 LeuA allosteric (dimerisation) domain Acfer_1341 PF00682 HMGL-like Acfer_1342 PF01808 AICARFT/IMPCHase bienzyme Acfer_1342 PF02142 MGS-like domain Acfer_1346 PF05683 Fumarase C-terminus Acfer_1347 PF05681 Fumarate hydratase (Fumerase) Acfer_1348 PF00939 Sodium:sulfate symporter transmembrane region Acfer_1349 PF00392 Bacterial regulatory proteins, gntR family Acfer_1349 PF07729 FCD domain Acfer_1350 PF00679 Elongation factor G C-terminus Acfer_1350 PF06421 GTP-binding protein LepA C-terminus Acfer_1350 PF03144 Elongation factor Tu domain 2 Acfer_1350 PF00009 Elongation factor Tu GTP binding domain Acfer_1351 PF01649 Ribosomal protein S20 Acfer_1352 PF06574 FAD synthetase Acfer_1352 PF01687 Riboflavin kinase Acfer_1353 PF01509 TruB family pseudouridylate synthase (N terminal domain) Acfer_1353 PF16198 tRNA pseudouridylate synthase B C-terminal domain Acfer_1354 PF02272 DHHA1 domain Acfer_1354 PF01368 DHH family Acfer_1355 PF02033 Ribosome-binding factor A Acfer_1356 PF00009 Elongation factor Tu GTP binding domain Acfer_1356 PF11987 Translation-initiation factor 2 Acfer_1356 PF04760 Translation initiation factor IF-2, N-terminal region Acfer_1356 PF00009 Elongation factor Tu GTP binding domain Acfer_1356 PF11987 Translation-initiation factor 2 Acfer_1356 PF04760 Translation initiation factor IF-2, N-terminal region Acfer_1358 PF04296 Protein of unknown function (DUF448) Acfer_1359 PF00575 S1 RNA binding domain Acfer_1359 PF13184 NusA-like KH domain Acfer_1359 PF08529 NusA N-terminal domain Acfer_1360 PF02576 RimP N-terminal domain Acfer_1360 PF17384 RimP C-terminal SH3 domain Acfer_1361 PF00912 Transglycosylase Acfer_1361 PF00905 Penicillin binding protein transpeptidase domain Acfer_1362 PF02436 Conserved carboxylase domain Acfer_1362 PF00682 HMGL-like Acfer_1363 PF01546 Peptidase family M20/M25/M40 Acfer_1365 PF02574 Homocysteine S-methyltransferase Acfer_1367 PF13276 HTH-like domain Acfer_1367 PF00665 Integrase core domain Acfer_1367 PF13333 Integrase core domain Acfer_1368 PF01235 Sodium:alanine symporter family Acfer_1369 PF01546 Peptidase family M20/M25/M40 Acfer_1370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Acfer_1370 PF14579 Helix-hairpin-helix motif Acfer_1370 PF02811 PHP domain Acfer_1370 PF00929 Exonuclease Acfer_1370 PF07733 Bacterial DNA polymerase III alpha NTPase domain Acfer_1370 PF11490 DNA polymerase III polC-type N-terminus II Acfer_1371 PF02308 MgtC family Acfer_1372 PF04073 Aminoacyl-tRNA editing domain Acfer_1372 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Acfer_1372 PF03129 Anticodon binding domain Acfer_1373 PF04551 GcpE protein Acfer_1374 PF02163 Peptidase family M50 Acfer_1374 PF17820 PDZ domain Acfer_1375 PF13288 DXP reductoisomerase C-terminal domain Acfer_1375 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Acfer_1375 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Acfer_1377 PF01255 Putative undecaprenyl diphosphate synthase Acfer_1379 PF01765 Ribosome recycling factor Acfer_1380 PF00696 Amino acid kinase family Acfer_1381 PF00889 Elongation factor TS Acfer_1382 PF00318 Ribosomal protein S2 Acfer_1383 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Acfer_1383 PF01411 tRNA synthetases class II (A) Acfer_1383 PF02272 DHHA1 domain Acfer_1385 PF01063 Amino-transferase class IV Acfer_1386 PF00563 EAL domain Acfer_1386 PF00990 Diguanylate cyclase, GGDEF domain Acfer_1386 PF03707 Bacterial signalling protein N terminal repeat Acfer_1387 PF13185 GAF domain Acfer_1387 PF00990 Diguanylate cyclase, GGDEF domain Acfer_1388 PF14622 Ribonuclease-III-like Acfer_1388 PF00035 Double-stranded RNA binding motif Acfer_1389 PF02801 Beta-ketoacyl synthase, C-terminal domain Acfer_1389 PF00109 Beta-ketoacyl synthase, N-terminal domain Acfer_1390 PF03060 Nitronate monooxygenase Acfer_1391 PF00550 Phosphopantetheine attachment site Acfer_1393 PF00698 Acyl transferase domain Acfer_1394 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Acfer_1394 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Acfer_1395 PF02504 Fatty acid synthesis protein Acfer_1396 PF03061 Thioesterase superfamily Acfer_1397 PF00923 Transaldolase/Fructose-6-phosphate aldolase Acfer_1398 PF01783 Ribosomal L32p protein family Acfer_1401 PF05636 HIGH Nucleotidyl Transferase Acfer_1403 PF01467 Cytidylyltransferase-like Acfer_1411 PF01546 Peptidase family M20/M25/M40 Acfer_1415 PF06968 Biotin and Thiamin Synthesis associated domain Acfer_1415 PF04055 Radical SAM superfamily Acfer_1418 PF04127 DNA / pantothenate metabolism flavoprotein Acfer_1418 PF02441 Flavoprotein Acfer_1420 PF00625 Guanylate kinase Acfer_1421 PF04025 Domain of unknown function (DUF370) Acfer_1422 PF03755 YicC-like family, N-terminal region Acfer_1422 PF08340 Domain of unknown function (DUF1732) Acfer_1425 PF00920 Dehydratase family Acfer_1427 PF01336 OB-fold nucleic acid binding domain Acfer_1427 PF00152 tRNA synthetases class II (D, K and N) Acfer_1428 PF01272 Transcription elongation factor, GreA/GreB, C-term Acfer_1428 PF03449 Transcription elongation factor, N-terminal Acfer_1429 PF03600 Citrate transporter Acfer_1430 PF08534 Redoxin Acfer_1431 PF00118 TCP-1/cpn60 chaperonin family Acfer_1432 PF00166 Chaperonin 10 Kd subunit Acfer_1434 PF00398 Ribosomal RNA adenine dimethylase Acfer_1435 PF13662 Toprim domain Acfer_1435 PF13331 Domain of unknown function (DUF4093) Acfer_1436 PF06725 3D domain Acfer_1436 PF01476 LysM domain Acfer_1437 PF01026 TatD related DNase Acfer_1438 PF01588 Putative tRNA binding domain Acfer_1438 PF08264 Anticodon-binding domain of tRNA Acfer_1438 PF09334 tRNA synthetases class I (M) Acfer_1441 PF00990 Diguanylate cyclase, GGDEF domain Acfer_1443 PF00483 Nucleotidyl transferase Acfer_1444 PF01195 Peptidyl-tRNA hydrolase Acfer_1445 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Acfer_1445 PF14572 Phosphoribosyl synthetase-associated domain Acfer_1446 PF00132 Bacterial transferase hexapeptide (six repeats) Acfer_1446 PF12804 MobA-like NTP transferase domain Acfer_1447 PF13291 ACT domain Acfer_1447 PF00291 Pyridoxal-phosphate dependent enzyme Acfer_1448 PF00156 Phosphoribosyl transferase domain Acfer_1448 PF09182 Bacterial purine repressor, N-terminal Acfer_1449 PF00392 Bacterial regulatory proteins, gntR family Acfer_1449 PF07729 FCD domain Acfer_1450 PF08544 GHMP kinases C terminal Acfer_1450 PF00288 GHMP kinases N terminal domain Acfer_1451 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Acfer_1451 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Acfer_1452 PF03616 Sodium/glutamate symporter Acfer_1455 PF10531 SLBB domain Acfer_1456 PF13344 Haloacid dehalogenase-like hydrolase Acfer_1457 PF00497 Bacterial extracellular solute-binding proteins, family 3 Acfer_1458 PF11849 Domain of unknown function (DUF3369) Acfer_1460 PF04474 Protein of unknown function (DUF554) Acfer_1461 PF00842 Alanine racemase, C-terminal domain Acfer_1461 PF01168 Alanine racemase, N-terminal domain Acfer_1464 PF00664 ABC transporter transmembrane region Acfer_1464 PF00005 ABC transporter Acfer_1465 PF00664 ABC transporter transmembrane region Acfer_1465 PF00005 ABC transporter Acfer_1467 PF14490 Helix-hairpin-helix containing domain Acfer_1467 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Acfer_1467 PF13538 UvrD-like helicase C-terminal domain Acfer_1471 PF01515 Phosphate acetyl/butaryl transferase Acfer_1473 PF02127 Aminopeptidase I zinc metalloprotease (M18) Acfer_1475 PF00378 Enoyl-CoA hydratase/isomerase Acfer_1476 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Acfer_1476 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Acfer_1477 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Acfer_1477 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Acfer_1477 PF02770 Acyl-CoA dehydrogenase, middle domain Acfer_1478 PF02803 Thiolase, C-terminal domain Acfer_1478 PF00108 Thiolase, N-terminal domain Acfer_1481 PF00633 Helix-hairpin-helix motif Acfer_1481 PF00730 HhH-GPD superfamily base excision DNA repair protein Acfer_1482 PF05167 Uncharacterised ACR (DUF711) Acfer_1485 PF01259 SAICAR synthetase Acfer_1486 PF01048 Phosphorylase superfamily Acfer_1489 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acfer_1490 PF00085 Thioredoxin Acfer_1494 PF02583 Metal-sensitive transcriptional repressor Acfer_1495 PF08264 Anticodon-binding domain of tRNA Acfer_1495 PF00133 tRNA synthetases class I (I, L, M and V) Acfer_1495 PF06827 Zinc finger found in FPG and IleRS Acfer_1496 PF08032 RNA 2'-O ribose methyltransferase substrate binding Acfer_1496 PF00588 SpoU rRNA Methylase family Acfer_1497 PF02080 TrkA-C domain Acfer_1497 PF02254 TrkA-N domain Acfer_1498 PF02386 Cation transport protein Acfer_1499 PF01070 FMN-dependent dehydrogenase Acfer_1500 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Acfer_1505 PF00448 SRP54-type protein, GTPase domain Acfer_1505 PF02881 SRP54-type protein, helical bundle domain Acfer_1506 PF02463 RecF/RecN/SMC N terminal domain Acfer_1506 PF06470 SMC proteins Flexible Hinge Domain Acfer_1508 PF01479 S4 domain Acfer_1508 PF00849 RNA pseudouridylate synthase Acfer_1509 PF01252 Signal peptidase (SPase) II Acfer_1510 PF13419 Haloacid dehalogenase-like hydrolase Acfer_1512 PF00152 tRNA synthetases class II (D, K and N) Acfer_1512 PF02938 GAD domain Acfer_1512 PF01336 OB-fold nucleic acid binding domain Acfer_1513 PF13393 Histidyl-tRNA synthetase Acfer_1513 PF03129 Anticodon binding domain Acfer_1514 PF01594 AI-2E family transporter Acfer_1515 PF00753 Metallo-beta-lactamase superfamily Acfer_1516 PF02580 D-Tyr-tRNA(Tyr) deacylase Acfer_1517 PF02824 TGS domain Acfer_1517 PF13291 ACT domain Acfer_1517 PF04607 Region found in RelA / SpoT proteins Acfer_1518 PF01368 DHH family Acfer_1518 PF02272 DHHA1 domain Acfer_1518 PF17768 RecJ OB domain Acfer_1518 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Acfer_1520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acfer_1521 PF02355 Protein export membrane protein Acfer_1521 PF07549 SecD/SecF GG Motif Acfer_1522 PF07549 SecD/SecF GG Motif Acfer_1522 PF02355 Protein export membrane protein Acfer_1524 PF02699 Preprotein translocase subunit Acfer_1525 PF01702 Queuine tRNA-ribosyltransferase Acfer_1526 PF02547 Queuosine biosynthesis protein Acfer_1527 PF04122 Putative cell wall binding repeat 2 Acfer_1527 PF08486 Stage II sporulation protein Acfer_1528 PF05496 Holliday junction DNA helicase RuvB P-loop domain Acfer_1528 PF17864 RuvB AAA lid domain Acfer_1528 PF05491 RuvB C-terminal winged helix domain Acfer_1530 PF02075 Crossover junction endodeoxyribonuclease RuvC Acfer_1531 PF01709 Transcriptional regulator Acfer_1533 PF00291 Pyridoxal-phosphate dependent enzyme Acfer_1533 PF14821 Threonine synthase N terminus Acfer_1534 PF00795 Carbon-nitrogen hydrolase Acfer_1534 PF02540 NAD synthase Acfer_1537 PF04055 Radical SAM superfamily Acfer_1537 PF06968 Biotin and Thiamin Synthesis associated domain Acfer_1538 PF02915 Rubrerythrin Acfer_1541 PF03180 NLPA lipoprotein Acfer_1542 PF01717 Cobalamin-independent synthase, Catalytic domain Acfer_1547 PF01022 Bacterial regulatory protein, arsR family Acfer_1548 PF06953 Arsenical resistance operon trans-acting repressor ArsD Acfer_1549 PF02374 Anion-transporting ATPase Acfer_1550 PF01451 Low molecular weight phosphotyrosine protein phosphatase Acfer_1551 PF01758 Sodium Bile acid symporter family Acfer_1554 PF04397 LytTr DNA-binding domain Acfer_1554 PF00072 Response regulator receiver domain Acfer_1557 PF01863 Protein of unknown function DUF45 Acfer_1558 PF01595 Cyclin M transmembrane N-terminal domain Acfer_1558 PF00571 CBS domain Acfer_1558 PF03471 Transporter associated domain Acfer_1561 PF00557 Metallopeptidase family M24 Acfer_1565 PF07670 Nucleoside recognition Acfer_1565 PF07664 Ferrous iron transport protein B C terminus Acfer_1565 PF02421 Ferrous iron transport protein B Acfer_1565 PF17910 FeoB cytosolic helical domain Acfer_1570 PF02780 Transketolase, C-terminal domain Acfer_1570 PF02779 Transketolase, pyrimidine binding domain Acfer_1570 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Acfer_1574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1574 PF03466 LysR substrate binding domain Acfer_1575 PF02770 Acyl-CoA dehydrogenase, middle domain Acfer_1575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Acfer_1575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Acfer_1576 PF00753 Metallo-beta-lactamase superfamily Acfer_1576 PF00258 Flavodoxin Acfer_1578 PF00814 Glycoprotease family Acfer_1580 PF00814 Glycoprotease family Acfer_1581 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Acfer_1582 PF01293 Phosphoenolpyruvate carboxykinase Acfer_1583 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Acfer_1583 PF02770 Acyl-CoA dehydrogenase, middle domain Acfer_1583 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Acfer_1585 PF06725 3D domain Acfer_1585 PF01476 LysM domain Acfer_1586 PF03951 Glutamine synthetase, beta-Grasp domain Acfer_1586 PF00120 Glutamine synthetase, catalytic domain Acfer_1589 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Acfer_1589 PF13378 Enolase C-terminal domain-like Acfer_1590 PF01546 Peptidase family M20/M25/M40 Acfer_1591 PF00144 Beta-lactamase Acfer_1592 PF01207 Dihydrouridine synthase (Dus) Acfer_1593 PF03309 Type III pantothenate kinase Acfer_1594 PF02632 BioY family Acfer_1595 PF03099 Biotin/lipoate A/B protein ligase family Acfer_1595 PF02237 Biotin protein ligase C terminal domain Acfer_1595 PF08279 HTH domain Acfer_1596 PF00004 ATPase family associated with various cellular activities (AAA) Acfer_1596 PF17862 AAA+ lid domain Acfer_1596 PF06480 FtsH Extracellular Acfer_1596 PF01434 Peptidase family M41 Acfer_1598 PF01171 PP-loop family Acfer_1598 PF11734 TilS substrate C-terminal domain Acfer_1599 PF00575 S1 RNA binding domain Acfer_1600 PF00403 Heavy-metal-associated domain Acfer_1604 PF13660 Domain of unknown function (DUF4147) Acfer_1604 PF05161 MOFRL family Acfer_1605 PF00924 Mechanosensitive ion channel Acfer_1606 PF01202 Shikimate kinase Acfer_1607 PF08501 Shikimate dehydrogenase substrate binding domain Acfer_1608 PF01817 Chorismate mutase type II Acfer_1608 PF00800 Prephenate dehydratase Acfer_1609 PF01264 Chorismate synthase Acfer_1610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Acfer_1611 PF01761 3-dehydroquinate synthase Acfer_1612 PF02153 Prephenate dehydrogenase Acfer_1613 PF18152 DAHP synthase ferredoxin-like domain Acfer_1613 PF00793 DAHP synthetase I family Acfer_1615 PF10609 NUBPL iron-transfer P-loop NTPase Acfer_1617 PF00216 Bacterial DNA-binding protein Acfer_1618 PF03819 MazG nucleotide pyrophosphohydrolase domain Acfer_1619 PF01943 Polysaccharide biosynthesis protein Acfer_1619 PF14667 Polysaccharide biosynthesis C-terminal domain Acfer_1620 PF17757 UvrB interaction domain Acfer_1620 PF02559 CarD-like/TRCF domain Acfer_1620 PF00270 DEAD/DEAH box helicase Acfer_1620 PF00271 Helicase conserved C-terminal domain Acfer_1620 PF03461 TRCF domain Acfer_1621 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Acfer_1622 PF00117 Glutamine amidotransferase class-I Acfer_1622 PF06418 CTP synthase N-terminus Acfer_1623 PF03485 Arginyl tRNA synthetase N terminal domain Acfer_1623 PF00750 tRNA synthetases class I (R) Acfer_1623 PF05746 DALR anticodon binding domain Acfer_1625 PF00474 Sodium:solute symporter family Acfer_1627 PF01520 N-acetylmuramoyl-L-alanine amidase Acfer_1627 PF08239 Bacterial SH3 domain Acfer_1628 PF03853 YjeF-related protein N-terminus Acfer_1628 PF01256 Carbohydrate kinase Acfer_1629 PF01648 4'-phosphopantetheinyl transferase superfamily Acfer_1630 PF12002 MgsA AAA+ ATPase C terminal Acfer_1630 PF16193 AAA C-terminal domain Acfer_1630 PF00004 ATPase family associated with various cellular activities (AAA) Acfer_1631 PF00654 Voltage gated chloride channel Acfer_1632 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Acfer_1632 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Acfer_1633 PF00005 ABC transporter Acfer_1634 PF02653 Branched-chain amino acid transport system / permease component Acfer_1638 PF01435 Peptidase family M48 Acfer_1639 PF00149 Calcineurin-like phosphoesterase Acfer_1639 PF12320 Type 5 capsule protein repressor C-terminal domain Acfer_1640 PF13476 AAA domain Acfer_1641 PF04055 Radical SAM superfamily Acfer_1643 PF06508 Queuosine biosynthesis protein QueC Acfer_1644 PF14489 QueF-like protein Acfer_1646 PF03806 AbgT putative transporter family Acfer_1648 PF12127 SigmaW regulon antibacterial Acfer_1651 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Acfer_1653 PF01370 NAD dependent epimerase/dehydratase family Acfer_1654 PF00294 pfkB family carbohydrate kinase Acfer_1654 PF01467 Cytidylyltransferase-like Acfer_1655 PF13580 SIS domain Acfer_1658 PF04393 Protein of unknown function (DUF535) Acfer_1662 PF01205 Uncharacterized protein family UPF0029 Acfer_1662 PF09186 Domain of unknown function (DUF1949) Acfer_1664 PF00665 Integrase core domain Acfer_1664 PF13333 Integrase core domain Acfer_1664 PF13276 HTH-like domain Acfer_1666 PF00395 S-layer homology domain Acfer_1668 PF00395 S-layer homology domain Acfer_1669 PF00395 S-layer homology domain Acfer_1670 PF00395 S-layer homology domain Acfer_1672 PF11283 Protein of unknown function (DUF3084) Acfer_1676 PF00005 ABC transporter Acfer_1681 PF00571 CBS domain Acfer_1681 PF01380 SIS domain Acfer_1682 PF00793 DAHP synthetase I family Acfer_1683 PF02348 Cytidylyltransferase Acfer_1684 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Acfer_1685 PF00664 ABC transporter transmembrane region Acfer_1685 PF00005 ABC transporter Acfer_1686 PF02684 Lipid-A-disaccharide synthetase Acfer_1687 PF06230 LpxI C-terminal domain Acfer_1687 PF17930 LpxI N-terminal domain Acfer_1688 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Acfer_1688 PF00132 Bacterial transferase hexapeptide (six repeats) Acfer_1689 PF07977 FabA-like domain Acfer_1689 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Acfer_1692 PF00132 Bacterial transferase hexapeptide (six repeats) Acfer_1692 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Acfer_1696 PF01103 Surface antigen Acfer_1696 PF07244 Surface antigen variable number repeat Acfer_1700 PF00005 ABC transporter Acfer_1701 PF02405 Permease MlaE Acfer_1702 PF17820 PDZ domain Acfer_1702 PF05580 SpoIVB peptidase S55 Acfer_1704 PF12708 Pectate lyase superfamily protein Acfer_1704 PF09992 Phosphodiester glycosidase Acfer_1706 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Acfer_1709 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Acfer_1710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Acfer_1710 PF02874 ATP synthase alpha/beta family, beta-barrel domain Acfer_1711 PF00231 ATP synthase Acfer_1712 PF02874 ATP synthase alpha/beta family, beta-barrel domain Acfer_1712 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Acfer_1712 PF00306 ATP synthase alpha/beta chain, C terminal domain Acfer_1713 PF00430 ATP synthase B/B' CF(0) Acfer_1714 PF00137 ATP synthase subunit C Acfer_1715 PF00119 ATP synthase A chain Acfer_1717 PF02350 UDP-N-acetylglucosamine 2-epimerase Acfer_1718 PF00953 Glycosyl transferase family 4 Acfer_1721 PF01554 MatE Acfer_1722 PF01676 Metalloenzyme superfamily Acfer_1722 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Acfer_1726 PF02132 RecR protein Acfer_1726 PF13662 Toprim domain Acfer_1727 PF02575 YbaB/EbfC DNA-binding family Acfer_1728 PF12169 DNA polymerase III subunits gamma and tau domain III Acfer_1729 PF02913 FAD linked oxidases, C-terminal domain Acfer_1729 PF01565 FAD binding domain Acfer_1730 PF14437 MafB19-like deaminase Acfer_1731 PF04204 Homoserine O-succinyltransferase Acfer_1734 PF00149 Calcineurin-like phosphoesterase Acfer_1735 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Acfer_1736 PF01938 TRAM domain Acfer_1736 PF05958 tRNA (Uracil-5-)-methyltransferase Acfer_1737 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Acfer_1737 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Acfer_1740 PF00106 short chain dehydrogenase Acfer_1741 PF00583 Acetyltransferase (GNAT) family Acfer_1745 PF00375 Sodium:dicarboxylate symporter family Acfer_1746 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Acfer_1746 PF08666 SAF domain Acfer_1747 PF08666 SAF domain Acfer_1747 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Acfer_1749 PF07687 Peptidase dimerisation domain Acfer_1749 PF01546 Peptidase family M20/M25/M40 Acfer_1750 PF03606 C4-dicarboxylate anaerobic carrier Acfer_1753 PF02829 3H domain Acfer_1753 PF08279 HTH domain Acfer_1754 PF01177 Asp/Glu/Hydantoin racemase Acfer_1756 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Acfer_1756 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Acfer_1758 PF08331 Domain of unknown function (DUF1730) Acfer_1760 PF02934 GatB/GatE catalytic domain Acfer_1760 PF02637 GatB domain Acfer_1761 PF01425 Amidase Acfer_1762 PF02686 Glu-tRNAGln amidotransferase C subunit Acfer_1763 PF01053 Cys/Met metabolism PLP-dependent enzyme Acfer_1764 PF00180 Isocitrate/isopropylmalate dehydrogenase Acfer_1765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1765 PF03466 LysR substrate binding domain Acfer_1767 PF13332 Hemagglutinin repeat Acfer_1767 PF05860 haemagglutination activity domain Acfer_1767 PF04829 Pre-toxin domain with VENN motif Acfer_1770 PF04829 Pre-toxin domain with VENN motif Acfer_1770 PF05860 haemagglutination activity domain Acfer_1770 PF13332 Hemagglutinin repeat Acfer_1770 PF13018 Extended Signal Peptide of Type V secretion system Acfer_1773 PF04829 Pre-toxin domain with VENN motif Acfer_1773 PF05860 haemagglutination activity domain Acfer_1773 PF13018 Extended Signal Peptide of Type V secretion system Acfer_1773 PF13332 Hemagglutinin repeat Acfer_1774 PF01695 IstB-like ATP binding protein Acfer_1776 PF13332 Hemagglutinin repeat Acfer_1776 PF04829 Pre-toxin domain with VENN motif Acfer_1776 PF05860 haemagglutination activity domain Acfer_1776 PF13018 Extended Signal Peptide of Type V secretion system Acfer_1777 PF05594 Haemagluttinin repeat Acfer_1777 PF04829 Pre-toxin domain with VENN motif Acfer_1777 PF13332 Hemagglutinin repeat Acfer_1777 PF05860 haemagglutination activity domain Acfer_1777 PF15526 Novel toxin 21 Acfer_1778 PF17287 POTRA domain Acfer_1778 PF08479 POTRA domain, ShlB-type Acfer_1778 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Acfer_1779 PF05746 DALR anticodon binding domain Acfer_1779 PF02092 Glycyl-tRNA synthetase beta subunit Acfer_1780 PF02091 Glycyl-tRNA synthetase alpha subunit Acfer_1781 PF04545 Sigma-70, region 4 Acfer_1781 PF00140 Sigma-70 factor, region 1.2 Acfer_1781 PF03979 Sigma-70 factor, region 1.1 Acfer_1781 PF04542 Sigma-70 region 2 Acfer_1781 PF04539 Sigma-70 region 3 Acfer_1782 PF01807 CHC2 zinc finger Acfer_1782 PF10410 DnaB-helicase binding domain of primase Acfer_1782 PF08275 DNA primase catalytic core, N-terminal domain Acfer_1783 PF03618 Kinase/pyrophosphorylase Acfer_1784 PF00571 CBS domain Acfer_1784 PF08279 HTH domain Acfer_1785 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Acfer_1785 PF02896 PEP-utilising enzyme, TIM barrel domain Acfer_1785 PF00391 PEP-utilising enzyme, mobile domain Acfer_1786 PF01613 Flavin reductase like domain Acfer_1787 PF01032 FecCD transport family Acfer_1790 PF04015 Domain of unknown function (DUF362) Acfer_1791 PF02590 Predicted SPOUT methyltransferase Acfer_1792 PF13180 PDZ domain Acfer_1793 PF00753 Metallo-beta-lactamase superfamily Acfer_1796 PF06426 Serine acetyltransferase, N-terminal Acfer_1796 PF00132 Bacterial transferase hexapeptide (six repeats) Acfer_1797 PF00291 Pyridoxal-phosphate dependent enzyme Acfer_1801 PF00209 Sodium:neurotransmitter symporter family Acfer_1802 PF00209 Sodium:neurotransmitter symporter family Acfer_1804 PF03061 Thioesterase superfamily Acfer_1808 PF03477 ATP cone domain Acfer_1808 PF13597 Anaerobic ribonucleoside-triphosphate reductase Acfer_1810 PF03606 C4-dicarboxylate anaerobic carrier Acfer_1811 PF03466 LysR substrate binding domain Acfer_1811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1812 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Acfer_1812 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Acfer_1814 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Acfer_1815 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Acfer_1816 PF01869 BadF/BadG/BcrA/BcrD ATPase family Acfer_1817 PF01039 Carboxyl transferase domain Acfer_1818 PF01144 Coenzyme A transferase Acfer_1819 PF01144 Coenzyme A transferase Acfer_1820 PF01743 Poly A polymerase head domain Acfer_1820 PF12627 Probable RNA and SrmB- binding site of polymerase A Acfer_1820 PF13735 tRNA nucleotidyltransferase domain 2 putative Acfer_1821 PF00575 S1 RNA binding domain Acfer_1821 PF10150 Ribonuclease E/G family Acfer_1824 PF01098 Cell cycle protein Acfer_1825 PF00905 Penicillin binding protein transpeptidase domain Acfer_1825 PF03717 Penicillin-binding Protein dimerisation domain Acfer_1829 PF04002 RadC-like JAB domain Acfer_1830 PF02545 Maf-like protein Acfer_1834 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Acfer_1835 PF00364 Biotin-requiring enzyme Acfer_1836 PF04277 Oxaloacetate decarboxylase, gamma chain Acfer_1837 PF01039 Carboxyl transferase domain Acfer_1838 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Acfer_1838 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Acfer_1840 PF13581 Histidine kinase-like ATPase domain Acfer_1844 PF01979 Amidohydrolase family Acfer_1845 PF17391 Urocanase N-terminal domain Acfer_1845 PF01175 Urocanase Rossmann-like domain Acfer_1845 PF17392 Urocanase C-terminal domain Acfer_1846 PF06968 Biotin and Thiamin Synthesis associated domain Acfer_1846 PF04055 Radical SAM superfamily Acfer_1848 PF13520 Amino acid permease Acfer_1849 PF07722 Peptidase C26 Acfer_1850 PF02310 B12 binding domain Acfer_1850 PF02607 B12 binding domain Acfer_1850 PF02574 Homocysteine S-methyltransferase Acfer_1850 PF02965 Vitamin B12 dependent methionine synthase, activation domain Acfer_1850 PF00809 Pterin binding enzyme Acfer_1852 PF02219 Methylenetetrahydrofolate reductase Acfer_1853 PF00155 Aminotransferase class I and II Acfer_1853 PF00392 Bacterial regulatory proteins, gntR family Acfer_1854 PF03591 AzlC protein Acfer_1855 PF05437 Branched-chain amino acid transport protein (AzlD) Acfer_1856 PF00156 Phosphoribosyl transferase domain Acfer_1858 PF17941 Polyphosphate kinase C-terminal domain 1 Acfer_1858 PF13089 Polyphosphate kinase N-terminal domain Acfer_1858 PF02503 Polyphosphate kinase middle domain Acfer_1858 PF13090 Polyphosphate kinase C-terminal domain 2 Acfer_1860 PF02541 Ppx/GppA phosphatase family Acfer_1862 PF01434 Peptidase family M41 Acfer_1862 PF06480 FtsH Extracellular Acfer_1862 PF17862 AAA+ lid domain Acfer_1862 PF00004 ATPase family associated with various cellular activities (AAA) Acfer_1863 PF03806 AbgT putative transporter family Acfer_1864 PF14815 NUDIX domain Acfer_1864 PF00730 HhH-GPD superfamily base excision DNA repair protein Acfer_1865 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Acfer_1865 PF09297 NADH pyrophosphatase zinc ribbon domain Acfer_1865 PF00293 NUDIX domain Acfer_1866 PF07687 Peptidase dimerisation domain Acfer_1866 PF01546 Peptidase family M20/M25/M40 Acfer_1867 PF02626 Carboxyltransferase domain, subdomain A and B Acfer_1868 PF02682 Carboxyltransferase domain, subdomain C and D Acfer_1869 PF01566 Natural resistance-associated macrophage protein Acfer_1870 PF03746 LamB/YcsF family Acfer_1871 PF01566 Natural resistance-associated macrophage protein Acfer_1872 PF00395 S-layer homology domain Acfer_1873 PF08279 HTH domain Acfer_1873 PF02829 3H domain Acfer_1874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1874 PF03466 LysR substrate binding domain Acfer_1878 PF00005 ABC transporter Acfer_1880 PF00245 Alkaline phosphatase Acfer_1881 PF01895 PhoU domain Acfer_1882 PF00005 ABC transporter Acfer_1883 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_1885 PF12849 PBP superfamily domain Acfer_1886 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Acfer_1887 PF16653 Saccharopine dehydrogenase C-terminal domain Acfer_1887 PF03435 Saccharopine dehydrogenase NADP binding domain Acfer_1888 PF00491 Arginase family Acfer_1889 PF17284 Spermidine synthase tetramerisation domain Acfer_1890 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Acfer_1890 PF01276 Orn/Lys/Arg decarboxylase, major domain Acfer_1894 PF12848 ABC transporter Acfer_1894 PF00005 ABC transporter Acfer_1895 PF17179 4Fe-4S dicluster domain Acfer_1896 PF00175 Oxidoreductase NAD-binding domain Acfer_1896 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Acfer_1897 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Acfer_1897 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Acfer_1897 PF13187 4Fe-4S dicluster domain Acfer_1898 PF12850 Calcineurin-like phosphoesterase superfamily domain Acfer_1901 PF01196 Ribosomal protein L17 Acfer_1902 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Acfer_1902 PF01000 RNA polymerase Rpb3/RpoA insert domain Acfer_1902 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Acfer_1903 PF00163 Ribosomal protein S4/S9 N-terminal domain Acfer_1903 PF01479 S4 domain Acfer_1904 PF00411 Ribosomal protein S11 Acfer_1905 PF00416 Ribosomal protein S13/S18 Acfer_1906 PF00444 Ribosomal protein L36 Acfer_1907 PF01176 Translation initiation factor 1A / IF-1 Acfer_1908 PF05191 Adenylate kinase, active site lid Acfer_1909 PF00344 SecY translocase Acfer_1910 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Acfer_1911 PF00327 Ribosomal protein L30p/L7e Acfer_1912 PF00333 Ribosomal protein S5, N-terminal domain Acfer_1912 PF03719 Ribosomal protein S5, C-terminal domain Acfer_1913 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Acfer_1914 PF00347 Ribosomal protein L6 Acfer_1915 PF00410 Ribosomal protein S8 Acfer_1916 PF00253 Ribosomal protein S14p/S29e Acfer_1917 PF00673 ribosomal L5P family C-terminus Acfer_1917 PF00281 Ribosomal protein L5 Acfer_1918 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Acfer_1918 PF00467 KOW motif Acfer_1920 PF00366 Ribosomal protein S17 Acfer_1921 PF00831 Ribosomal L29 protein Acfer_1922 PF00252 Ribosomal protein L16p/L10e Acfer_1923 PF07650 KH domain Acfer_1923 PF00189 Ribosomal protein S3, C-terminal domain Acfer_1924 PF00237 Ribosomal protein L22p/L17e Acfer_1926 PF00181 Ribosomal Proteins L2, RNA binding domain Acfer_1926 PF03947 Ribosomal Proteins L2, C-terminal domain Acfer_1927 PF00276 Ribosomal protein L23 Acfer_1928 PF00573 Ribosomal protein L4/L1 family Acfer_1929 PF00297 Ribosomal protein L3 Acfer_1930 PF00338 Ribosomal protein S10p/S20e Acfer_1931 PF00009 Elongation factor Tu GTP binding domain Acfer_1931 PF03144 Elongation factor Tu domain 2 Acfer_1931 PF03143 Elongation factor Tu C-terminal domain Acfer_1932 PF14492 Elongation Factor G, domain II Acfer_1932 PF00009 Elongation factor Tu GTP binding domain Acfer_1932 PF03144 Elongation factor Tu domain 2 Acfer_1932 PF00679 Elongation factor G C-terminus Acfer_1932 PF03764 Elongation factor G, domain IV Acfer_1933 PF00177 Ribosomal protein S7p/S5e Acfer_1934 PF00164 Ribosomal protein S12/S23 Acfer_1935 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Acfer_1940 PF16326 ABC transporter C-terminal domain Acfer_1940 PF12848 ABC transporter Acfer_1940 PF00005 ABC transporter Acfer_1941 PF16363 GDP-mannose 4,6 dehydratase Acfer_1942 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Acfer_1942 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acfer_1942 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Acfer_1942 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Acfer_1945 PF14659 Phage integrase, N-terminal SAM-like domain Acfer_1945 PF00589 Phage integrase family Acfer_1953 PF02082 Transcriptional regulator Acfer_1954 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Acfer_1954 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acfer_1955 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Acfer_1955 PF02906 Iron only hydrogenase large subunit, C-terminal domain Acfer_1955 PF00037 4Fe-4S binding domain Acfer_1955 PF02256 Iron hydrogenase small subunit Acfer_1956 PF01470 Pyroglutamyl peptidase Acfer_1957 PF09587 Bacterial capsule synthesis protein PGA_cap Acfer_1958 PF07690 Major Facilitator Superfamily Acfer_1958 PF07690 Major Facilitator Superfamily Acfer_1961 PF00004 ATPase family associated with various cellular activities (AAA) Acfer_1961 PF02861 Clp amino terminal domain, pathogenicity island component Acfer_1961 PF17871 AAA lid domain Acfer_1961 PF07724 AAA domain (Cdc48 subfamily) Acfer_1961 PF10431 C-terminal, D2-small domain, of ClpB protein Acfer_1963 PF01475 Ferric uptake regulator family Acfer_1966 PF03466 LysR substrate binding domain Acfer_1966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1967 PF03466 LysR substrate binding domain Acfer_1968 PF18324 Hypothetical protein TT1725 Acfer_1968 PF00180 Isocitrate/isopropylmalate dehydrogenase Acfer_1970 PF10282 Lactonase, 7-bladed beta-propeller Acfer_1971 PF00330 Aconitase family (aconitate hydratase) Acfer_1972 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1972 PF03466 LysR substrate binding domain Acfer_1973 PF00330 Aconitase family (aconitate hydratase) Acfer_1973 PF00694 Aconitase C-terminal domain Acfer_1974 PF04303 PrpF protein Acfer_1976 PF04909 Amidohydrolase Acfer_1979 PF00881 Nitroreductase family Acfer_1980 PF01979 Amidohydrolase family Acfer_1981 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Acfer_1982 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Acfer_1983 PF03466 LysR substrate binding domain Acfer_1983 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_1985 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acfer_1985 PF04324 BFD-like [2Fe-2S] binding domain Acfer_1986 PF01266 FAD dependent oxidoreductase Acfer_1986 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Acfer_1987 PF00939 Sodium:sulfate symporter transmembrane region Acfer_1988 PF12833 Helix-turn-helix domain Acfer_1988 PF02311 AraC-like ligand binding domain Acfer_1990 PF01042 Endoribonuclease L-PSP Acfer_1991 PF07969 Amidohydrolase family Acfer_1992 PF00474 Sodium:solute symporter family Acfer_1993 PF07687 Peptidase dimerisation domain Acfer_1993 PF01546 Peptidase family M20/M25/M40 Acfer_1994 PF00291 Pyridoxal-phosphate dependent enzyme Acfer_1996 PF00375 Sodium:dicarboxylate symporter family Acfer_1997 PF12697 Alpha/beta hydrolase family Acfer_1999 PF08402 TOBE domain Acfer_1999 PF00005 ABC transporter Acfer_2000 PF00528 Binding-protein-dependent transport system inner membrane component Acfer_2001 PF00005 ABC transporter Acfer_2001 PF08402 TOBE domain Acfer_2004 PF00491 Arginase family Acfer_2005 PF01566 Natural resistance-associated macrophage protein Acfer_2006 PF01614 Bacterial transcriptional regulator Acfer_2006 PF09339 IclR helix-turn-helix domain Acfer_2007 PF01546 Peptidase family M20/M25/M40 Acfer_2008 PF07687 Peptidase dimerisation domain Acfer_2008 PF01546 Peptidase family M20/M25/M40 Acfer_2011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_2011 PF03466 LysR substrate binding domain Acfer_2012 PF07729 FCD domain Acfer_2012 PF00392 Bacterial regulatory proteins, gntR family Acfer_2013 PF03480 Bacterial extracellular solute-binding protein, family 7 Acfer_2015 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Acfer_2016 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Acfer_2016 PF13378 Enolase C-terminal domain-like Acfer_2018 PF13333 Integrase core domain Acfer_2018 PF13276 HTH-like domain Acfer_2018 PF00665 Integrase core domain Acfer_2023 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_2023 PF03466 LysR substrate binding domain Acfer_2028 PF02080 TrkA-C domain Acfer_2028 PF03600 Citrate transporter Acfer_2029 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Acfer_2029 PF01842 ACT domain Acfer_2029 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acfer_2031 PF03737 Aldolase/RraA Acfer_2032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acfer_2032 PF03466 LysR substrate binding domain Acfer_2034 PF01842 ACT domain Acfer_2034 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acfer_2034 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Acfer_2035 PF02646 RmuC family Acfer_2036 PF00440 Bacterial regulatory proteins, tetR family Acfer_2039 PF05658 Head domain of trimeric autotransporter adhesin Acfer_2039 PF05662 Coiled stalk of trimeric autotransporter adhesin Acfer_2039 PF13018 Extended Signal Peptide of Type V secretion system Acfer_2039 PF03895 YadA-like membrane anchor domain Acfer_2043 PF01546 Peptidase family M20/M25/M40 Acfer_2043 PF07687 Peptidase dimerisation domain Acfer_2044 PF17674 HHH domain Acfer_2044 PF00575 S1 RNA binding domain Acfer_2044 PF09371 Tex-like protein N-terminal domain Acfer_2044 PF16921 Tex protein YqgF-like domain Acfer_2046 PF00005 ABC transporter Acfer_2047 PF00005 ABC transporter Acfer_2048 PF17099 Tryptophan transporter TrpP Acfer_2049 PF00440 Bacterial regulatory proteins, tetR family Acfer_2049 PF02909 Tetracyclin repressor-like, C-terminal domain Acfer_2050 PF00011 Hsp20/alpha crystallin family Acfer_2053 PF00206 Lyase Acfer_2053 PF10415 Fumarase C C-terminus Acfer_2054 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Acfer_2057 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acfer_2057 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Acfer_2061 PF07722 Peptidase C26 Acfer_2062 PF00309 Sigma-54 factor, Activator interacting domain (AID) Acfer_2062 PF04963 Sigma-54 factor, core binding domain Acfer_2062 PF04552 Sigma-54, DNA binding domain Acfer_2063 PF00155 Aminotransferase class I and II Acfer_2065 PF00356 Bacterial regulatory proteins, lacI family Acfer_2067 PF00701 Dihydrodipicolinate synthetase family Acfer_2071 PF02195 ParB-like nuclease domain Acfer_2071 PF17762 HTH domain found in ParB protein Acfer_2072 PF13614 AAA domain Acfer_2073 PF07687 Peptidase dimerisation domain Acfer_2073 PF01546 Peptidase family M20/M25/M40 Acfer_2075 PF02527 rRNA small subunit methyltransferase G Acfer_2076 PF13932 GidA associated domain Acfer_2076 PF01134 Glucose inhibited division protein A Acfer_2077 PF01926 50S ribosome-binding GTPase Acfer_2077 PF12631 MnmE helical domain Acfer_2077 PF10396 GTP-binding protein TrmE N-terminus Acfer_2078 PF14804 Jag N-terminus Acfer_2078 PF01424 R3H domain Acfer_2079 PF02096 60Kd inner membrane protein Acfer_2079 PF14849 YidC periplasmic domain Acfer_2080 PF01809 Putative membrane protein insertion efficiency factor Acfer_2081 PF00825 Ribonuclease P Acfer_2082 PF00468 Ribosomal protein L34 Acfer_2084 PF01546 Peptidase family M20/M25/M40 Acfer_2085 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Acfer_2085 PF01926 50S ribosome-binding GTPase Acfer_2086 PF01926 50S ribosome-binding GTPase Acfer_2087 PF00710 Asparaginase, N-terminal Acfer_2087 PF17763 Glutaminase/Asparaginase C-terminal domain Acfer_2089 PF00860 Permease family Acfer_2090 PF00156 Phosphoribosyl transferase domain Acfer_2091 PF13188 PAS domain Acfer_2091 PF03707 Bacterial signalling protein N terminal repeat Acfer_2091 PF00990 Diguanylate cyclase, GGDEF domain Acfer_2091 PF00563 EAL domain Acfer_2092 PF07722 Peptidase C26