Acfer_0001 SM00382 ATPases associated with a variety of cellular activities Acfer_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Acfer_0003 SM00382 ATPases associated with a variety of cellular activities Acfer_0003 SM00760 Bacterial dnaA protein helix-turn-helix domain Acfer_0004 SM00480 DNA polymerase III beta subunit Acfer_0008 SM00387 Histidine kinase-like ATPases Acfer_0008 SM00433 TopoisomeraseII Acfer_0009 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Acfer_0011 SM00434 DNA Topoisomerase IV Acfer_0014 SM00919 Malic enzyme, NAD binding domain Acfer_0014 SM01274 Acfer_0014 Acfer_0018 SM00382 ATPases associated with a variety of cellular activities Acfer_0019 SM00382 ATPases associated with a variety of cellular activities Acfer_0020 SM00116 Domain in cystathionine beta-synthase and other proteins. Acfer_0025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acfer_0034 SM00448 cheY-homologous receiver domain Acfer_0034 SM00850 LytTr DNA-binding domain Acfer_0042 SM00267 diguanylate cyclase Acfer_0044 SM00382 ATPases associated with a variety of cellular activities Acfer_0045 SM00998 Adenylosuccinate lyase C-terminus Acfer_0046 SM00788 Adenylosuccinate synthetase Acfer_0071 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Acfer_0082 SM00858 Acfer_0082 Acfer_0086 SM00382 ATPases associated with a variety of cellular activities Acfer_0089 SM00448 cheY-homologous receiver domain Acfer_0089 SM00862 Transcriptional regulatory protein, C terminal Acfer_0090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acfer_0090 SM00387 Histidine kinase-like ATPases Acfer_0090 SM00388 His Kinase A (phosphoacceptor) domain Acfer_0094 SM00903 Flavin reductase like domain Acfer_0098 SM00448 cheY-homologous receiver domain Acfer_0098 SM00862 Transcriptional regulatory protein, C terminal Acfer_0099 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acfer_0099 SM00387 Histidine kinase-like ATPases Acfer_0099 SM00388 His Kinase A (phosphoacceptor) domain Acfer_0104 SM00986 Uracil DNA glycosylase superfamily Acfer_0104 SM00987 UreE urease accessory protein, C-terminal domain Acfer_0111 SM00900 Acfer_0111 Acfer_0114 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_0116 SM00382 ATPases associated with a variety of cellular activities Acfer_0125 SM00387 Histidine kinase-like ATPases Acfer_0125 SM00388 His Kinase A (phosphoacceptor) domain Acfer_0126 SM00448 cheY-homologous receiver domain Acfer_0126 SM00862 Transcriptional regulatory protein, C terminal Acfer_0127 SM00257 Lysin motif Acfer_0143 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acfer_0146 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_0154 SM01329 Acfer_0154 Acfer_0159 SM00448 cheY-homologous receiver domain Acfer_0159 SM00862 Transcriptional regulatory protein, C terminal Acfer_0160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acfer_0160 SM00387 Histidine kinase-like ATPases Acfer_0160 SM00388 His Kinase A (phosphoacceptor) domain Acfer_0189 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acfer_0196 SM00357 Cold shock protein domain Acfer_0197 SM00822 Acfer_0197 Acfer_0213 SM00382 ATPases associated with a variety of cellular activities Acfer_0215 SM00346 helix_turn_helix isocitrate lyase regulation Acfer_0225 SM00876 Biotin and Thiamin Synthesis associated domain Acfer_0228 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Acfer_0231 SM00382 ATPases associated with a variety of cellular activities Acfer_0235 SM01221 Acfer_0235 Acfer_0235 SM01222 Acfer_0235 Acfer_0248 SM00382 ATPases associated with a variety of cellular activities Acfer_0250 SM00849 Metallo-beta-lactamase superfamily Acfer_0251 SM00967 RNA 2'-O ribose methyltransferase substrate binding Acfer_0259 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Acfer_0260 SM00649 Ribosomal protein L11/L12 Acfer_0264 SM00382 ATPases associated with a variety of cellular activities Acfer_0264 SM00930 Acfer_0264 Acfer_0273 SM00382 ATPases associated with a variety of cellular activities Acfer_0278 SM00287 Bacterial SH3 domain homologues Acfer_0307 SM00764 Citrate lyase ligase C-terminal domain Acfer_0309 SM00487 DEAD-like helicases superfamily Acfer_0309 SM00490 helicase superfamily c-terminal domain Acfer_0315 SM00331 Sigma factor PP2C-like phosphatases Acfer_0315 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Acfer_0316 SM00220 Serine/Threonine protein kinases, catalytic domain Acfer_0316 SM00740 Acfer_0316 Acfer_0321 SM00382 ATPases associated with a variety of cellular activities Acfer_0328 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acfer_0338 SM00382 ATPases associated with a variety of cellular activities Acfer_0344 SM00663 RNA polymerase I subunit A N-terminus Acfer_0348 SM00382 ATPases associated with a variety of cellular activities Acfer_0349 SM00382 ATPases associated with a variety of cellular activities Acfer_0358 SM00382 ATPases associated with a variety of cellular activities Acfer_0360 SM00322 K homology RNA-binding domain Acfer_0360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acfer_0390 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acfer_0396 SM00327 von Willebrand factor (vWF) type A domain Acfer_0403 SM00642 Alpha-amylase domain Acfer_0405 SM00642 Alpha-amylase domain Acfer_0421 SM00937 Acfer_0421 Acfer_0431 SM00830 Chorismate mutase type II Acfer_0443 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Acfer_0443 SM00475 5'-3' exonuclease Acfer_0443 SM00482 DNA polymerase A domain Acfer_0444 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Acfer_0444 SM01232 Acfer_0444 Acfer_0454 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_0454 SM00322 K homology RNA-binding domain Acfer_0458 SM00487 DEAD-like helicases superfamily Acfer_0458 SM00490 helicase superfamily c-terminal domain Acfer_0459 SM00838 Elongation factor G C-terminus Acfer_0459 SM00889 Elongation factor G, domain IV Acfer_0461 SM00861 Transketolase, pyrimidine binding domain Acfer_0466 SM00382 ATPases associated with a variety of cellular activities Acfer_0466 SM00962 SRP54-type protein, GTPase domain Acfer_0466 SM00963 SRP54-type protein, helical bundle domain Acfer_0477 SM00382 ATPases associated with a variety of cellular activities Acfer_0483 SM00487 DEAD-like helicases superfamily Acfer_0483 SM00490 helicase superfamily c-terminal domain Acfer_0489 SM00890 Domain of unknown function Acfer_0499 SM00984 UDP binding domain Acfer_0505 SM00382 ATPases associated with a variety of cellular activities Acfer_0505 SM00994 ClpX C4-type zinc finger Acfer_0505 SM01086 C-terminal, D2-small domain, of ClpB protein Acfer_0506 SM00382 ATPases associated with a variety of cellular activities Acfer_0506 SM00464 Found in ATP-dependent protease La (LON) Acfer_0515 SM00487 DEAD-like helicases superfamily Acfer_0515 SM00490 helicase superfamily c-terminal domain Acfer_0516 SM00382 ATPases associated with a variety of cellular activities Acfer_0517 SM00465 GIY-YIG type nucleases (URI domain) Acfer_0551 SM00849 Metallo-beta-lactamase superfamily Acfer_0551 SM01027 Beta-Casp domain Acfer_0552 SM00838 Elongation factor G C-terminus Acfer_0554 SM00481 DNA polymerase alpha chain like domain Acfer_0555 SM00893 Electron transfer flavoprotein domain Acfer_0556 SM00893 Electron transfer flavoprotein domain Acfer_0569 SM00984 UDP binding domain Acfer_0582 SM00382 ATPases associated with a variety of cellular activities Acfer_0604 SM01131 Acfer_0604 Acfer_0606 SM01329 Acfer_0606 Acfer_0615 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acfer_0615 SM00292 breast cancer carboxy-terminal domain Acfer_0615 SM00532 Ligase N family Acfer_0623 SM01091 Transporter associated domain Acfer_0647 SM00636 Acfer_0647 Acfer_0648 SM00062 Bacterial periplasmic substrate-binding proteins Acfer_0648 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Acfer_0649 SM00062 Bacterial periplasmic substrate-binding proteins Acfer_0649 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Acfer_0651 SM00382 ATPases associated with a variety of cellular activities Acfer_0653 SM00957 SecA DEAD-like domain Acfer_0653 SM00958 SecA preprotein cross-linking domain Acfer_0654 SM00937 Acfer_0654 Acfer_0657 SM00382 ATPases associated with a variety of cellular activities Acfer_0660 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acfer_0660 SM00245 tail specific protease Acfer_0661 SM00387 Histidine kinase-like ATPases Acfer_0661 SM00388 His Kinase A (phosphoacceptor) domain Acfer_0662 SM00518 AP endonuclease family 2 Acfer_0668 SM01387 Acfer_0668 Acfer_0674 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acfer_0683 SM00382 ATPases associated with a variety of cellular activities Acfer_0685 SM00091 PAS domain Acfer_0686 SM00052 Putative diguanylate phosphodiesterase Acfer_0686 SM00091 PAS domain Acfer_0686 SM00267 diguanylate cyclase Acfer_0693 SM00919 Malic enzyme, NAD binding domain Acfer_0693 SM01274 Acfer_0693 Acfer_0701 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_0705 SM00271 DnaJ molecular chaperone homology domain Acfer_0707 SM00912 haemagglutination activity domain Acfer_0711 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_0717 SM01058 CarD-like/TRCF domain Acfer_0718 SM00670 Large family of predicted nucleotide-binding domains Acfer_0721 SM00840 Acfer_0721 Acfer_0722 SM00535 Ribonuclease III family Acfer_0725 SM00014 Acid phosphatase homologues Acfer_0755 SM00530 Helix-turn-helix XRE-family like proteins Acfer_0756 SM00487 DEAD-like helicases superfamily Acfer_0772 SM00831 Cation transporter/ATPase, N-terminus Acfer_0777 SM00382 ATPases associated with a variety of cellular activities Acfer_0778 SM00062 Bacterial periplasmic substrate-binding proteins Acfer_0778 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Acfer_0785 SM00859 Semialdehyde dehydrogenase, NAD binding domain Acfer_0787 SM00100 Cyclic nucleotide-monophosphate binding domain Acfer_0787 SM00419 helix_turn_helix, cAMP Regulatory protein Acfer_0797 SM00487 DEAD-like helicases superfamily Acfer_0797 SM00490 helicase superfamily c-terminal domain Acfer_0799 SM00267 diguanylate cyclase Acfer_0802 SM00052 Putative diguanylate phosphodiesterase Acfer_0802 SM00091 PAS domain Acfer_0802 SM00267 diguanylate cyclase Acfer_0809 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acfer_0815 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acfer_0819 SM00529 Helix-turn-helix diphteria tox regulatory element Acfer_0820 SM00448 cheY-homologous receiver domain Acfer_0820 SM00862 Transcriptional regulatory protein, C terminal Acfer_0821 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acfer_0821 SM00387 Histidine kinase-like ATPases Acfer_0821 SM00388 His Kinase A (phosphoacceptor) domain Acfer_0832 SM00421 helix_turn_helix, Lux Regulon Acfer_0832 SM00448 cheY-homologous receiver domain Acfer_0851 SM00861 Transketolase, pyrimidine binding domain Acfer_0852 SM00363 S4 RNA-binding domain Acfer_0859 SM00382 ATPases associated with a variety of cellular activities Acfer_0868 SM00052 Putative diguanylate phosphodiesterase Acfer_0869 SM00849 Metallo-beta-lactamase superfamily Acfer_0873 SM00899 Acfer_0873 Acfer_0878 SM00644 Acfer_0878 Acfer_0882 SM00382 ATPases associated with a variety of cellular activities Acfer_0883 SM00382 ATPases associated with a variety of cellular activities Acfer_0886 SM00873 B3/4 domain Acfer_0886 SM00874 tRNA synthetase B5 domain Acfer_0886 SM00896 Ferredoxin-fold anticodon binding domain Acfer_0888 SM00829 Enoylreductase Acfer_0889 SM00833 Cobalamin synthesis protein cobW C-terminal domain Acfer_0893 SM00382 ATPases associated with a variety of cellular activities Acfer_0894 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Acfer_0897 SM00732 Likely ribonuclease with RNase H fold. Acfer_0902 SM00841 Elongation factor P, C-terminal Acfer_0902 SM01185 Acfer_0902 Acfer_0903 SM00855 Phosphoglycerate mutase family Acfer_0906 SM01211 Acfer_0906 Acfer_0907 SM01264 Acfer_0907 Acfer_0930 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Acfer_0933 SM01192 Acfer_0933 Acfer_0933 SM01193 Acfer_0933 Acfer_0935 SM00954 Region found in RelA / SpoT proteins Acfer_0936 SM00448 cheY-homologous receiver domain Acfer_0936 SM00862 Transcriptional regulatory protein, C terminal Acfer_0937 SM00387 Histidine kinase-like ATPases Acfer_0937 SM00388 His Kinase A (phosphoacceptor) domain Acfer_0962 SM00849 Metallo-beta-lactamase superfamily Acfer_0974 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_0974 SM00357 Cold shock protein domain Acfer_0974 SM00955 Acfer_0974 Acfer_0982 SM00363 S4 RNA-binding domain Acfer_0983 SM00855 Phosphoglycerate mutase family Acfer_0985 SM00893 Electron transfer flavoprotein domain Acfer_0986 SM00893 Electron transfer flavoprotein domain Acfer_0987 SM00479 Acfer_0987 Acfer_0989 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Acfer_1003 SM01001 AIR carboxylase Acfer_1007 SM00382 ATPases associated with a variety of cellular activities Acfer_1015 SM00487 DEAD-like helicases superfamily Acfer_1015 SM00490 helicase superfamily c-terminal domain Acfer_1016 SM00852 Probable molybdopterin binding domain Acfer_1017 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_1019 SM00382 ATPases associated with a variety of cellular activities Acfer_1019 SM00843 Acfer_1019 Acfer_1020 SM00849 Metallo-beta-lactamase superfamily Acfer_1026 SM00481 DNA polymerase alpha chain like domain Acfer_1044 SM00382 ATPases associated with a variety of cellular activities Acfer_1045 SM00382 ATPases associated with a variety of cellular activities Acfer_1047 SM00226 Low molecular weight phosphatase family Acfer_1052 SM00671 Sel1-like repeats. Acfer_1060 SM00271 DnaJ molecular chaperone homology domain Acfer_1074 SM00530 Helix-turn-helix XRE-family like proteins Acfer_1080 SM00470 ParB-like nuclease domain Acfer_1082 SM00507 HNH nucleases Acfer_1085 SM00487 DEAD-like helicases superfamily Acfer_1086 SM00990 Acfer_1086 Acfer_1089 SM00942 Primase C terminal 1 (PriCT-1) Acfer_1093 SM00482 DNA polymerase A domain Acfer_1104 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acfer_1104 SM00895 Acfer_1104 Acfer_1118 SM00530 Helix-turn-helix XRE-family like proteins Acfer_1125 SM00646 Acfer_1125 Acfer_1131 SM00482 DNA polymerase A domain Acfer_1153 SM00857 Resolvase, N terminal domain Acfer_1162 SM00530 Helix-turn-helix XRE-family like proteins Acfer_1165 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_1167 SM01321 Acfer_1167 Acfer_1168 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acfer_1173 SM00487 DEAD-like helicases superfamily Acfer_1177 SM00344 helix_turn_helix ASNC type Acfer_1179 SM00382 ATPases associated with a variety of cellular activities Acfer_1179 SM00930 Acfer_1179 Acfer_1187 SM00448 cheY-homologous receiver domain Acfer_1190 SM00858 Acfer_1190 Acfer_1193 SM01130 Acfer_1193 Acfer_1195 SM00859 Semialdehyde dehydrogenase, NAD binding domain Acfer_1211 SM00853 MutL C terminal dimerisation domain Acfer_1211 SM01340 Acfer_1211 Acfer_1212 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Acfer_1212 SM00534 ATPase domain of DNA mismatch repair MUTS family Acfer_1213 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_1217 SM00382 ATPases associated with a variety of cellular activities Acfer_1231 SM00849 Metallo-beta-lactamase superfamily Acfer_1236 SM01207 Acfer_1236 Acfer_1239 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_1240 SM00563 Phosphate acyltransferases Acfer_1243 SM00363 S4 RNA-binding domain Acfer_1250 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Acfer_1250 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Acfer_1250 SM00493 Acfer_1250 Acfer_1260 SM00487 DEAD-like helicases superfamily Acfer_1260 SM00490 helicase superfamily c-terminal domain Acfer_1271 SM00116 Domain in cystathionine beta-synthase and other proteins. Acfer_1271 SM00924 MgtE intracellular N domain Acfer_1273 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Acfer_1275 SM01240 Acfer_1275 Acfer_1276 SM01209 Acfer_1276 Acfer_1276 SM01210 Acfer_1276 Acfer_1277 SM00851 MGS-like domain Acfer_1281 SM01001 AIR carboxylase Acfer_1283 SM00463 Small MutS-related domain Acfer_1283 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Acfer_1283 SM00534 ATPase domain of DNA mismatch repair MUTS family Acfer_1285 SM00052 Putative diguanylate phosphodiesterase Acfer_1296 SM00864 Tubulin/FtsZ family, GTPase domain Acfer_1296 SM00865 Tubulin/FtsZ family, C-terminal domain Acfer_1300 SM01209 Acfer_1300 Acfer_1312 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Acfer_1315 SM00851 MGS-like domain Acfer_1315 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Acfer_1316 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Acfer_1320 SM00487 DEAD-like helicases superfamily Acfer_1320 SM00490 helicase superfamily c-terminal domain Acfer_1336 SM00450 Rhodanese Homology Domain Acfer_1338 SM00849 Metallo-beta-lactamase superfamily Acfer_1341 SM00917 LeuA allosteric (dimerisation) domain Acfer_1342 SM00798 AICARFT/IMPCHase bienzyme Acfer_1349 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acfer_1349 SM00895 Acfer_1349 Acfer_1350 SM00838 Elongation factor G C-terminus Acfer_1352 SM00904 Riboflavin kinase Acfer_1359 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_1359 SM00322 K homology RNA-binding domain Acfer_1370 SM00481 DNA polymerase alpha chain like domain Acfer_1374 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acfer_1383 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Acfer_1384 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_1386 SM00267 diguanylate cyclase Acfer_1386 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acfer_1387 SM00267 diguanylate cyclase Acfer_1387 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acfer_1388 SM00358 Double-stranded RNA binding motif Acfer_1388 SM00535 Ribonuclease III family Acfer_1389 SM00825 Beta-ketoacyl synthase Acfer_1392 SM00822 Acfer_1392 Acfer_1393 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Acfer_1408 SM00671 Sel1-like repeats. Acfer_1415 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_1419 SM01409 Acfer_1419 Acfer_1420 SM00072 Guanylate kinase homologues. Acfer_1432 SM00883 Chaperonin 10 Kd subunit Acfer_1434 SM00650 Ribosomal RNA adenine dimethylases Acfer_1435 SM00493 Acfer_1435 Acfer_1436 SM01208 Acfer_1436 Acfer_1441 SM00267 diguanylate cyclase Acfer_1445 SM01400 Acfer_1445 Acfer_1449 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acfer_1449 SM00895 Acfer_1449 Acfer_1454 SM00849 Metallo-beta-lactamase superfamily Acfer_1455 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acfer_1457 SM00062 Bacterial periplasmic substrate-binding proteins Acfer_1457 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Acfer_1461 SM01005 Alanine racemase, C-terminal domain Acfer_1464 SM00382 ATPases associated with a variety of cellular activities Acfer_1465 SM00382 ATPases associated with a variety of cellular activities Acfer_1467 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acfer_1467 SM00382 ATPases associated with a variety of cellular activities Acfer_1481 SM00478 endonuclease III Acfer_1481 SM00525 Acfer_1481 Acfer_1492 SM00935 Outer membrane protein (OmpH-like) Acfer_1496 SM00967 RNA 2'-O ribose methyltransferase substrate binding Acfer_1505 SM00382 ATPases associated with a variety of cellular activities Acfer_1505 SM00962 SRP54-type protein, GTPase domain Acfer_1505 SM00963 SRP54-type protein, helical bundle domain Acfer_1506 SM00968 SMC proteins Flexible Hinge Domain Acfer_1508 SM00363 S4 RNA-binding domain Acfer_1515 SM00849 Metallo-beta-lactamase superfamily Acfer_1517 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acfer_1517 SM00954 Region found in RelA / SpoT proteins Acfer_1524 SM01323 Acfer_1524 Acfer_1528 SM00382 ATPases associated with a variety of cellular activities Acfer_1529 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acfer_1537 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_1537 SM00876 Biotin and Thiamin Synthesis associated domain Acfer_1547 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acfer_1549 SM00382 ATPases associated with a variety of cellular activities Acfer_1550 SM00226 Low molecular weight phosphatase family Acfer_1554 SM00850 LytTr DNA-binding domain Acfer_1558 SM00116 Domain in cystathionine beta-synthase and other proteins. Acfer_1558 SM01091 Transporter associated domain Acfer_1563 SM00899 Acfer_1563 Acfer_1564 SM00899 Acfer_1564 Acfer_1570 SM00861 Transketolase, pyrimidine binding domain Acfer_1576 SM00849 Metallo-beta-lactamase superfamily Acfer_1586 SM01230 Acfer_1586 Acfer_1589 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Acfer_1596 SM00382 ATPases associated with a variety of cellular activities Acfer_1599 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_1617 SM00411 bacterial (prokaryotic) histone like domain Acfer_1620 SM00487 DEAD-like helicases superfamily Acfer_1620 SM00490 helicase superfamily c-terminal domain Acfer_1620 SM00982 Acfer_1620 Acfer_1620 SM01058 CarD-like/TRCF domain Acfer_1623 SM00836 DALR anticodon binding domain Acfer_1623 SM01016 Arginyl tRNA synthetase N terminal dom Acfer_1626 SM00909 Sporulation and spore germination Acfer_1627 SM00646 Acfer_1627 Acfer_1630 SM00382 ATPases associated with a variety of cellular activities Acfer_1633 SM00382 ATPases associated with a variety of cellular activities Acfer_1660 SM00287 Bacterial SH3 domain homologues Acfer_1661 SM00287 Bacterial SH3 domain homologues Acfer_1671 SM00732 Likely ribonuclease with RNase H fold. Acfer_1676 SM00382 ATPases associated with a variety of cellular activities Acfer_1681 SM00116 Domain in cystathionine beta-synthase and other proteins. Acfer_1685 SM00382 ATPases associated with a variety of cellular activities Acfer_1693 SM00935 Outer membrane protein (OmpH-like) Acfer_1695 SM00935 Outer membrane protein (OmpH-like) Acfer_1700 SM00382 ATPases associated with a variety of cellular activities Acfer_1710 SM00382 ATPases associated with a variety of cellular activities Acfer_1726 SM00493 Acfer_1726 Acfer_1728 SM00382 ATPases associated with a variety of cellular activities Acfer_1747 SM00858 Acfer_1747 Acfer_1756 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Acfer_1760 SM00845 GatB domain Acfer_1764 SM01329 Acfer_1764 Acfer_1774 SM00382 ATPases associated with a variety of cellular activities Acfer_1777 SM00912 haemagglutination activity domain Acfer_1779 SM00836 DALR anticodon binding domain Acfer_1782 SM00400 zinc finger Acfer_1782 SM00493 Acfer_1782 Acfer_1784 SM00116 Domain in cystathionine beta-synthase and other proteins. Acfer_1786 SM00903 Flavin reductase like domain Acfer_1792 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acfer_1793 SM00849 Metallo-beta-lactamase superfamily Acfer_1798 SM01301 Acfer_1798 Acfer_1818 SM00882 Coenzyme A transferase Acfer_1819 SM00882 Coenzyme A transferase Acfer_1821 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_1823 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_1840 SM00387 Histidine kinase-like ATPases Acfer_1842 SM00028 Tetratricopeptide repeats Acfer_1843 SM01043 Bacterial transcriptional activator domain Acfer_1846 SM00729 Elongator protein 3, MiaB family, Radical SAM Acfer_1850 SM01018 B12 binding domain Acfer_1853 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acfer_1862 SM00382 ATPases associated with a variety of cellular activities Acfer_1864 SM00478 endonuclease III Acfer_1864 SM00525 Acfer_1864 Acfer_1867 SM00797 Allophanate hydrolase subunit 2 Acfer_1868 SM00796 Allophanate hydrolase subunit 1 Acfer_1878 SM00382 ATPases associated with a variety of cellular activities Acfer_1880 SM00098 Alkaline phosphatase homologues Acfer_1882 SM00382 ATPases associated with a variety of cellular activities Acfer_1894 SM00382 ATPases associated with a variety of cellular activities Acfer_1902 SM00662 RNA polymerases D Acfer_1903 SM00363 S4 RNA-binding domain Acfer_1903 SM01390 Acfer_1903 Acfer_1907 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_1918 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Acfer_1919 SM01374 Acfer_1919 Acfer_1923 SM00322 K homology RNA-binding domain Acfer_1926 SM01382 Acfer_1926 Acfer_1926 SM01383 Acfer_1926 Acfer_1930 SM01403 Acfer_1930 Acfer_1932 SM00838 Elongation factor G C-terminus Acfer_1932 SM00889 Elongation factor G, domain IV Acfer_1940 SM00382 ATPases associated with a variety of cellular activities Acfer_1946 SM00530 Helix-turn-helix XRE-family like proteins Acfer_1954 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Acfer_1955 SM00902 Iron hydrogenase small subunit Acfer_1955 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Acfer_1957 SM00854 Bacterial capsule synthesis protein PGA_cap Acfer_1961 SM00382 ATPases associated with a variety of cellular activities Acfer_1961 SM01086 C-terminal, D2-small domain, of ClpB protein Acfer_1962 SM01118 Acfer_1962 Acfer_1968 SM01329 Acfer_1968 Acfer_1988 SM00342 helix_turn_helix, arabinose operon control protein Acfer_1995 SM00382 ATPases associated with a variety of cellular activities Acfer_1999 SM00382 ATPases associated with a variety of cellular activities Acfer_2001 SM00382 ATPases associated with a variety of cellular activities Acfer_2006 SM00346 helix_turn_helix isocitrate lyase regulation Acfer_2012 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acfer_2012 SM00895 Acfer_2012 Acfer_2016 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Acfer_2044 SM00316 Ribosomal protein S1-like RNA-binding domain Acfer_2044 SM00732 Likely ribonuclease with RNase H fold. Acfer_2046 SM00382 ATPases associated with a variety of cellular activities Acfer_2047 SM00382 ATPases associated with a variety of cellular activities Acfer_2065 SM00354 helix_turn _helix lactose operon repressor Acfer_2067 SM01130 Acfer_2067 Acfer_2071 SM00470 ParB-like nuclease domain Acfer_2076 SM01228 Acfer_2076 Acfer_2078 SM00393 Putative single-stranded nucleic acids-binding domain Acfer_2078 SM01245 Acfer_2078 Acfer_2080 SM01234 Acfer_2080 Acfer_2087 SM00870 Acfer_2087 Acfer_2091 SM00052 Putative diguanylate phosphodiesterase Acfer_2091 SM00267 diguanylate cyclase