locus-tag class description NQ562_00005 PF00308 Bacterial dnaA protein NQ562_00005 PF08299 Bacterial dnaA protein helix-turn-helix NQ562_00005 PF11638 DnaA N-terminal domain NQ562_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NQ562_00010 PF02767 DNA polymerase III beta subunit, central domain NQ562_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NQ562_00015 PF02463 RecF/RecN/SMC N terminal domain NQ562_00030 PF00204 DNA gyrase B NQ562_00030 PF00986 DNA gyrase B subunit, carboxyl terminus NQ562_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ562_00030 PF01751 Toprim domain NQ562_00040 PF01925 Sulfite exporter TauE/SafE NQ562_00045 PF03989 DNA gyrase C-terminal domain, beta-propeller NQ562_00045 PF00521 DNA gyrase/topoisomerase IV, subunit A NQ562_00055 PF13333 Integrase core domain NQ562_00055 PF00665 Integrase core domain NQ562_00055 PF13276 HTH-like domain NQ562_00060 PF01527 Transposase NQ562_00100 PF10369 Small subunit of acetolactate synthase NQ562_00105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NQ562_00105 PF00205 Thiamine pyrophosphate enzyme, central domain NQ562_00105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ562_00110 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NQ562_00110 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NQ562_00120 PF01758 Sodium Bile acid symporter family NQ562_00125 PF00920 Dehydratase family NQ562_00140 PF00392 Bacterial regulatory proteins, gntR family NQ562_00140 PF00155 Aminotransferase class I and II NQ562_00150 PF01297 Zinc-uptake complex component A periplasmic NQ562_00155 PF00005 ABC transporter NQ562_00160 PF00950 ABC 3 transport family NQ562_00165 PF01475 Ferric uptake regulator family NQ562_00175 PF03466 LysR substrate binding domain NQ562_00175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_00180 PF03600 Citrate transporter NQ562_00205 PF13458 Periplasmic binding protein NQ562_00220 PF02653 Branched-chain amino acid transport system / permease component NQ562_00225 PF02653 Branched-chain amino acid transport system / permease component NQ562_00225 PF11862 Domain of unknown function (DUF3382) NQ562_00230 PF12399 Branched-chain amino acid ATP-binding cassette transporter NQ562_00230 PF00005 ABC transporter NQ562_00235 PF00005 ABC transporter NQ562_00250 PF03606 C4-dicarboxylate anaerobic carrier NQ562_00260 PF01546 Peptidase family M20/M25/M40 NQ562_00265 PF01969 Protein of unknown function DUF111 NQ562_00270 PF00731 AIR carboxylase NQ562_00280 PF02632 BioY family NQ562_00290 PF00202 Aminotransferase class-III NQ562_00305 PF02659 Putative manganese efflux pump NQ562_00310 PF00817 impB/mucB/samB family NQ562_00310 PF11799 impB/mucB/samB family C-terminal domain NQ562_00310 PF11798 IMS family HHH motif NQ562_00330 PF00266 Aminotransferase class-V NQ562_00335 PF01250 Ribosomal protein S6 NQ562_00340 PF00436 Single-strand binding protein family NQ562_00345 PF01084 Ribosomal protein S18 NQ562_00355 PF02321 Outer membrane efflux protein NQ562_00360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NQ562_00365 PF00005 ABC transporter NQ562_00385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_00385 PF03466 LysR substrate binding domain NQ562_00390 PF04303 PrpF protein NQ562_00395 PF00330 Aconitase family (aconitate hydratase) NQ562_00395 PF00694 Aconitase C-terminal domain NQ562_00405 PF10282 Lactonase, 7-bladed beta-propeller NQ562_00410 PF00364 Biotin-requiring enzyme NQ562_00410 PF00682 HMGL-like NQ562_00410 PF02436 Conserved carboxylase domain NQ562_00415 PF17099 Tryptophan transporter TrpP NQ562_00420 PF00005 ABC transporter NQ562_00425 PF00005 ABC transporter NQ562_00440 PF01496 V-type ATPase 116kDa subunit family NQ562_00445 PF00137 ATP synthase subunit C NQ562_00450 PF01991 ATP synthase (E/31 kDa) subunit NQ562_00460 PF01990 ATP synthase (F/14-kDa) subunit NQ562_00465 PF16886 ATPsynthase alpha/beta subunit N-term extension NQ562_00465 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ562_00465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ562_00470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ562_00470 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ562_00475 PF01813 ATP synthase subunit D NQ562_00485 PF00072 Response regulator receiver domain NQ562_00485 PF00486 Transcriptional regulatory protein, C terminal NQ562_00490 PF00672 HAMP domain NQ562_00490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ562_00490 PF00512 His Kinase A (phospho-acceptor) domain NQ562_00500 PF01871 AMMECR1 NQ562_00500 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NQ562_00505 PF03167 Uracil DNA glycosylase superfamily NQ562_00520 PF02424 ApbE family NQ562_00525 PF13187 4Fe-4S dicluster domain NQ562_00525 PF04060 Putative Fe-S cluster NQ562_00530 PF02508 Rnf-Nqr subunit, membrane protein NQ562_00535 PF02508 Rnf-Nqr subunit, membrane protein NQ562_00540 PF04205 FMN-binding domain NQ562_00545 PF03116 NQR2, RnfD, RnfE family NQ562_00550 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NQ562_00550 PF13237 4Fe-4S dicluster domain NQ562_00550 PF13375 RnfC Barrel sandwich hybrid domain NQ562_00550 PF10531 SLBB domain NQ562_00560 PF00877 NlpC/P60 family NQ562_00565 PF02954 Bacterial regulatory protein, Fis family NQ562_00565 PF00072 Response regulator receiver domain NQ562_00565 PF00158 Sigma-54 interaction domain NQ562_00570 PF02390 Putative methyltransferase NQ562_00575 PF01098 Cell cycle protein NQ562_00580 PF03717 Penicillin-binding Protein dimerisation domain NQ562_00580 PF03793 PASTA domain NQ562_00580 PF00905 Penicillin binding protein transpeptidase domain NQ562_00585 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NQ562_00585 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NQ562_00595 PF13193 AMP-binding enzyme C-terminal domain NQ562_00595 PF00501 AMP-binding enzyme NQ562_00620 PF02554 Carbon starvation protein CstA NQ562_00625 PF01063 Amino-transferase class IV NQ562_00630 PF05736 OprF membrane domain NQ562_00630 PF00691 OmpA family NQ562_00635 PF01565 FAD binding domain NQ562_00635 PF02913 FAD linked oxidases, C-terminal domain NQ562_00645 PF02146 Sir2 family NQ562_00650 PF02403 Seryl-tRNA synthetase N-terminal domain NQ562_00650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NQ562_00655 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NQ562_00655 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NQ562_00670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NQ562_00670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NQ562_00680 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_00685 PF00005 ABC transporter NQ562_00685 PF08402 TOBE domain NQ562_00690 PF01042 Endoribonuclease L-PSP NQ562_00710 PF00491 Arginase family NQ562_00715 PF09339 IclR helix-turn-helix domain NQ562_00715 PF01614 Bacterial transcriptional regulator NQ562_00735 PF00266 Aminotransferase class-V NQ562_00740 PF08240 Alcohol dehydrogenase GroES-like domain NQ562_00740 PF00107 Zinc-binding dehydrogenase NQ562_00745 PF07683 Cobalamin synthesis protein cobW C-terminal domain NQ562_00745 PF02492 CobW/HypB/UreG, nucleotide-binding domain NQ562_00750 PF04011 LemA family NQ562_00770 PF01527 Transposase NQ562_00775 PF13276 HTH-like domain NQ562_00775 PF00665 Integrase core domain NQ562_00775 PF13333 Integrase core domain NQ562_00780 PF02535 ZIP Zinc transporter NQ562_00795 PF09269 Domain of unknown function (DUF1967) NQ562_00795 PF01018 GTP1/OBG NQ562_00795 PF01926 50S ribosome-binding GTPase NQ562_00800 PF01472 PUA domain NQ562_00800 PF00696 Amino acid kinase family NQ562_00805 PF00171 Aldehyde dehydrogenase family NQ562_00815 PF00005 ABC transporter NQ562_00820 PF02687 FtsX-like permease family NQ562_00820 PF00005 ABC transporter NQ562_00820 PF12704 MacB-like periplasmic core domain NQ562_00830 PF03746 LamB/YcsF family NQ562_00835 PF01566 Natural resistance-associated macrophage protein NQ562_00840 PF02682 Carboxyltransferase domain, subdomain C and D NQ562_00845 PF02626 Carboxyltransferase domain, subdomain A and B NQ562_00855 PF03806 AbgT putative transporter family NQ562_00865 PF00730 HhH-GPD superfamily base excision DNA repair protein NQ562_00865 PF14815 NUDIX domain NQ562_00870 PF17862 AAA+ lid domain NQ562_00870 PF06480 FtsH Extracellular NQ562_00870 PF01434 Peptidase family M41 NQ562_00870 PF00004 ATPase family associated with various cellular activities (AAA) NQ562_00880 PF01226 Formate/nitrite transporter NQ562_00890 PF07837 Formiminotransferase domain, N-terminal subdomain NQ562_00890 PF02971 Formiminotransferase domain NQ562_00895 PF01268 Formate--tetrahydrofolate ligase NQ562_00905 PF01527 Transposase NQ562_00910 PF13276 HTH-like domain NQ562_00910 PF00665 Integrase core domain NQ562_00910 PF13333 Integrase core domain NQ562_00915 PF02954 Bacterial regulatory protein, Fis family NQ562_00915 PF13426 PAS domain NQ562_00915 PF00158 Sigma-54 interaction domain NQ562_00920 PF02028 BCCT, betaine/carnitine/choline family transporter NQ562_00925 PF00221 Aromatic amino acid lyase NQ562_00930 PF03553 Na+/H+ antiporter family NQ562_00930 PF13726 Na+-H+ antiporter family NQ562_00935 PF00221 Aromatic amino acid lyase NQ562_00940 PF17391 Urocanase N-terminal domain NQ562_00940 PF17392 Urocanase C-terminal domain NQ562_00940 PF01175 Urocanase Rossmann-like domain NQ562_00945 PF01979 Amidohydrolase family NQ562_00960 PF13581 Histidine kinase-like ATPase domain NQ562_00970 PF01039 Carboxyl transferase domain NQ562_00975 PF04277 Oxaloacetate decarboxylase, gamma chain NQ562_00980 PF00364 Biotin-requiring enzyme NQ562_00985 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit NQ562_01010 PF02545 Maf-like protein NQ562_01015 PF04002 RadC-like JAB domain NQ562_01035 PF00905 Penicillin binding protein transpeptidase domain NQ562_01035 PF03717 Penicillin-binding Protein dimerisation domain NQ562_01040 PF01098 Cell cycle protein NQ562_01055 PF00575 S1 RNA binding domain NQ562_01055 PF10150 Ribonuclease E/G family NQ562_01060 PF01743 Poly A polymerase head domain NQ562_01060 PF12627 Probable RNA and SrmB- binding site of polymerase A NQ562_01060 PF13735 tRNA nucleotidyltransferase domain 2 putative NQ562_01065 PF01144 Coenzyme A transferase NQ562_01070 PF01144 Coenzyme A transferase NQ562_01075 PF01039 Carboxyl transferase domain NQ562_01080 PF01869 BadF/BadG/BcrA/BcrD ATPase family NQ562_01085 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NQ562_01090 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component NQ562_01095 PF03477 ATP cone domain NQ562_01095 PF13597 Anaerobic ribonucleoside-triphosphate reductase NQ562_01105 PF13333 Integrase core domain NQ562_01105 PF00665 Integrase core domain NQ562_01105 PF13276 HTH-like domain NQ562_01110 PF01527 Transposase NQ562_01115 PF07687 Peptidase dimerisation domain NQ562_01115 PF01546 Peptidase family M20/M25/M40 NQ562_01130 PF03061 Thioesterase superfamily NQ562_01140 PF00209 Sodium:neurotransmitter symporter family NQ562_01155 PF04284 Protein of unknown function (DUF441) NQ562_01160 PF03734 L,D-transpeptidase catalytic domain NQ562_01170 PF01475 Ferric uptake regulator family NQ562_01175 PF00753 Metallo-beta-lactamase superfamily NQ562_01185 PF13180 PDZ domain NQ562_01190 PF02590 Predicted SPOUT methyltransferase NQ562_01200 PF04015 Domain of unknown function (DUF362) NQ562_01205 PF08218 Citrate lyase ligase C-terminal domain NQ562_01210 PF00665 Integrase core domain NQ562_01210 PF13276 HTH-like domain NQ562_01210 PF13333 Integrase core domain NQ562_01215 PF01527 Transposase NQ562_01220 PF02773 S-adenosylmethionine synthetase, C-terminal domain NQ562_01220 PF02772 S-adenosylmethionine synthetase, central domain NQ562_01220 PF00438 S-adenosylmethionine synthetase, N-terminal domain NQ562_01225 PF00271 Helicase conserved C-terminal domain NQ562_01225 PF18074 Primosomal protein N C-terminal domain NQ562_01225 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NQ562_01225 PF04851 Type III restriction enzyme, res subunit NQ562_01225 PF17764 3′ DNA-binding domain (3′BD) NQ562_01230 PF01327 Polypeptide deformylase NQ562_01235 PF00551 Formyl transferase NQ562_01235 PF02911 Formyl transferase, C-terminal domain NQ562_01245 PF01029 NusB family NQ562_01245 PF01189 16S rRNA methyltransferase RsmB/F NQ562_01250 PF04055 Radical SAM superfamily NQ562_01260 PF03793 PASTA domain NQ562_01260 PF00069 Protein kinase domain NQ562_01265 PF16745 RsgA N-terminal domain NQ562_01265 PF03193 RsgA GTPase NQ562_01270 PF00834 Ribulose-phosphate 3 epimerase family NQ562_01280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NQ562_01280 PF01872 RibD C-terminal domain NQ562_01285 PF00677 Lumazine binding domain NQ562_01290 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NQ562_01290 PF00925 GTP cyclohydrolase II NQ562_01295 PF00885 6,7-dimethyl-8-ribityllumazine synthase NQ562_01300 PF01430 Hsp33 protein NQ562_01305 PF00154 recA bacterial DNA recombination protein NQ562_01315 PF01966 HD domain NQ562_01315 PF00013 KH domain NQ562_01315 PF12072 Domain of unknown function (DUF3552) NQ562_01330 PF01048 Phosphorylase superfamily NQ562_01335 PF01676 Metalloenzyme superfamily NQ562_01345 PF03063 Prismane/CO dehydrogenase family NQ562_01365 PF01678 Diaminopimelate epimerase NQ562_01370 PF00155 Aminotransferase class I and II NQ562_01380 PF01883 Iron-sulfur cluster assembly protein NQ562_01380 PF10609 NUBPL iron-transfer P-loop NTPase NQ562_01390 PF18152 DAHP synthase ferredoxin-like domain NQ562_01390 PF00793 DAHP synthetase I family NQ562_01400 PF01761 3-dehydroquinate synthase NQ562_01405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NQ562_01410 PF01264 Chorismate synthase NQ562_01415 PF01817 Chorismate mutase type II NQ562_01415 PF00800 Prephenate dehydratase NQ562_01420 PF01488 Shikimate / quinate 5-dehydrogenase NQ562_01420 PF08501 Shikimate dehydrogenase substrate binding domain NQ562_01425 PF01202 Shikimate kinase NQ562_01430 PF00682 HMGL-like NQ562_01440 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NQ562_01440 PF01488 Shikimate / quinate 5-dehydrogenase NQ562_01440 PF08501 Shikimate dehydrogenase substrate binding domain NQ562_01450 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NQ562_01450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NQ562_01455 PF03480 Bacterial extracellular solute-binding protein, family 7 NQ562_01465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_01465 PF03466 LysR substrate binding domain NQ562_01470 PF00205 Thiamine pyrophosphate enzyme, central domain NQ562_01470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NQ562_01470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ562_01480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_01480 PF03466 LysR substrate binding domain NQ562_01485 PF00465 Iron-containing alcohol dehydrogenase NQ562_01485 PF00171 Aldehyde dehydrogenase family NQ562_01490 PF10431 C-terminal, D2-small domain, of ClpB protein NQ562_01490 PF02861 Clp amino terminal domain, pathogenicity island component NQ562_01490 PF17871 AAA lid domain NQ562_01490 PF07724 AAA domain (Cdc48 subfamily) NQ562_01490 PF00004 ATPase family associated with various cellular activities (AAA) NQ562_01500 PF01487 Type I 3-dehydroquinase NQ562_01505 PF01202 Shikimate kinase NQ562_01510 PF00924 Mechanosensitive ion channel NQ562_01515 PF13660 Domain of unknown function (DUF4147) NQ562_01515 PF05161 MOFRL family NQ562_01535 PF01964 Radical SAM ThiC family NQ562_01540 PF10371 Domain of unknown function NQ562_01540 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NQ562_01540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ562_01540 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NQ562_01540 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NQ562_01555 PF16868 NMT1-like family NQ562_01560 PF02690 Na+/Pi-cotransporter NQ562_01565 PF00317 Ribonucleotide reductase, all-alpha domain NQ562_01565 PF02867 Ribonucleotide reductase, barrel domain NQ562_01565 PF03477 ATP cone domain NQ562_01610 PF00795 Carbon-nitrogen hydrolase NQ562_01615 PF01370 NAD dependent epimerase/dehydratase family NQ562_01640 PF04343 Protein of unknown function, DUF488 NQ562_01650 PF01235 Sodium:alanine symporter family NQ562_01655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NQ562_01655 PF05698 Bacterial trigger factor protein (TF) C-terminus NQ562_01655 PF05697 Bacterial trigger factor protein (TF) NQ562_01660 PF00574 Clp protease NQ562_01665 PF07724 AAA domain (Cdc48 subfamily) NQ562_01665 PF06689 ClpX C4-type zinc finger NQ562_01665 PF10431 C-terminal, D2-small domain, of ClpB protein NQ562_01670 PF05362 Lon protease (S16) C-terminal proteolytic domain NQ562_01670 PF00004 ATPase family associated with various cellular activities (AAA) NQ562_01670 PF02190 ATP-dependent protease La (LON) substrate-binding domain NQ562_01675 PF01926 50S ribosome-binding GTPase NQ562_01680 PF00293 NUDIX domain NQ562_01685 PF01545 Cation efflux family NQ562_01685 PF16916 Dimerisation domain of Zinc Transporter NQ562_01690 PF11741 AMIN domain NQ562_01690 PF00263 Bacterial type II and III secretion system protein NQ562_01690 PF03958 Bacterial type II/III secretion system short domain NQ562_01690 PF07660 Secretin and TonB N terminus short domain NQ562_01700 PF00437 Type II/IV secretion system protein NQ562_01705 PF03458 UPF0126 domain NQ562_01715 PF04461 Protein of unknown function (DUF520) NQ562_01725 PF00271 Helicase conserved C-terminal domain NQ562_01725 PF04851 Type III restriction enzyme, res subunit NQ562_01725 PF17757 UvrB interaction domain NQ562_01725 PF12344 Ultra-violet resistance protein B NQ562_01725 PF02151 UvrB/uvrC motif NQ562_01730 PF17760 UvrA interaction domain NQ562_01730 PF17755 UvrA DNA-binding domain NQ562_01735 PF02151 UvrB/uvrC motif NQ562_01735 PF08459 UvrC Helix-hairpin-helix N-terminal NQ562_01735 PF01541 GIY-YIG catalytic domain NQ562_01740 PF00301 Rubredoxin NQ562_01750 PF03668 P-loop ATPase protein family NQ562_01755 PF01933 Uncharacterised protein family UPF0052 NQ562_01760 PF02650 WhiA C-terminal HTH domain NQ562_01760 PF14527 WhiA LAGLIDADG-like domain NQ562_01760 PF10298 WhiA N-terminal LAGLIDADG-like domain NQ562_01805 PF02447 GntP family permease NQ562_01810 PF00005 ABC transporter NQ562_01815 PF01458 Uncharacterized protein family (UPF0051) NQ562_01820 PF01458 Uncharacterized protein family (UPF0051) NQ562_01825 PF00266 Aminotransferase class-V NQ562_01830 PF01592 NifU-like N terminal domain NQ562_01835 PF01138 3' exoribonuclease family, domain 1 NQ562_01835 PF00575 S1 RNA binding domain NQ562_01835 PF03725 3' exoribonuclease family, domain 2 NQ562_01835 PF00013 KH domain NQ562_01835 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NQ562_01840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQ562_01840 PF02378 Phosphotransferase system, EIIC NQ562_01840 PF00367 phosphotransferase system, EIIB NQ562_01850 PF00830 Ribosomal L28 family NQ562_01855 PF00271 Helicase conserved C-terminal domain NQ562_01855 PF17191 RecG wedge domain NQ562_01855 PF00270 DEAD/DEAH box helicase NQ562_01865 PF03144 Elongation factor Tu domain 2 NQ562_01865 PF00009 Elongation factor Tu GTP binding domain NQ562_01865 PF03764 Elongation factor G, domain IV NQ562_01865 PF14492 Elongation Factor G, domain II NQ562_01865 PF00679 Elongation factor G C-terminus NQ562_01870 PF02780 Transketolase, C-terminal domain NQ562_01870 PF00456 Transketolase, thiamine diphosphate binding domain NQ562_01870 PF02779 Transketolase, pyrimidine binding domain NQ562_01875 PF08543 Phosphomethylpyrimidine kinase NQ562_01880 PF02110 Hydroxyethylthiazole kinase family NQ562_01885 PF02581 Thiamine monophosphate synthase NQ562_01895 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NQ562_01900 PF02881 SRP54-type protein, helical bundle domain NQ562_01900 PF00448 SRP54-type protein, GTPase domain NQ562_01900 PF02978 Signal peptide binding domain NQ562_01905 PF00886 Ribosomal protein S16 NQ562_01920 PF05239 PRC-barrel domain NQ562_01920 PF01782 RimM N-terminal domain NQ562_01925 PF01746 tRNA (Guanine-1)-methyltransferase NQ562_01930 PF01245 Ribosomal protein L19 NQ562_01935 PF10502 Signal peptidase, peptidase S26 NQ562_01940 PF01926 50S ribosome-binding GTPase NQ562_01950 PF01351 Ribonuclease HII NQ562_01955 PF02021 Uncharacterised protein family UPF0102 NQ562_01960 PF01078 Magnesium chelatase, subunit ChlI NQ562_01960 PF13335 Magnesium chelatase, subunit ChlI C-terminal NQ562_01980 PF00155 Aminotransferase class I and II NQ562_01985 PF00485 Phosphoribulokinase / Uridine kinase family NQ562_01990 PF00155 Aminotransferase class I and II NQ562_02000 PF00270 DEAD/DEAH box helicase NQ562_02000 PF00271 Helicase conserved C-terminal domain NQ562_02005 PF00749 tRNA synthetases class I (E and Q), catalytic domain NQ562_02010 PF00480 ROK family NQ562_02015 PF00572 Ribosomal protein L13 NQ562_02020 PF00380 Ribosomal protein S9/S16 NQ562_02045 PF00005 ABC transporter NQ562_02050 PF00005 ABC transporter NQ562_02055 PF02361 Cobalt transport protein NQ562_02060 PF01416 tRNA pseudouridine synthase NQ562_02065 PF07715 TonB-dependent Receptor Plug Domain NQ562_02065 PF00593 TonB dependent receptor NQ562_02075 PF00005 ABC transporter NQ562_02080 PF01618 MotA/TolQ/ExbB proton channel family NQ562_02105 PF02632 BioY family NQ562_02110 PF00108 Thiolase, N-terminal domain NQ562_02110 PF02803 Thiolase, C-terminal domain NQ562_02115 PF00550 Phosphopantetheine attachment site NQ562_02115 PF00668 Condensation domain NQ562_02115 PF13193 AMP-binding enzyme C-terminal domain NQ562_02115 PF00501 AMP-binding enzyme NQ562_02115 PF00975 Thioesterase domain NQ562_02130 PF01980 tRNA-methyltransferase O NQ562_02130 PF18389 TrmO C-terminal domain NQ562_02150 PF04074 YhcH/YjgK/YiaL NQ562_02185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_02185 PF03466 LysR substrate binding domain NQ562_02190 PF14489 QueF-like protein NQ562_02195 PF06508 Queuosine biosynthesis protein QueC NQ562_02205 PF04055 Radical SAM superfamily NQ562_02220 PF00144 Beta-lactamase NQ562_02225 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NQ562_02225 PF13378 Enolase C-terminal domain-like NQ562_02240 PF03951 Glutamine synthetase, beta-Grasp domain NQ562_02240 PF00120 Glutamine synthetase, catalytic domain NQ562_02245 PF01476 LysM domain NQ562_02245 PF06725 3D domain NQ562_02255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NQ562_02255 PF02770 Acyl-CoA dehydrogenase, middle domain NQ562_02255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NQ562_02265 PF01293 Phosphoenolpyruvate carboxykinase NQ562_02270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NQ562_02275 PF00814 Glycoprotease family NQ562_02285 PF00814 Glycoprotease family NQ562_02290 PF02397 Bacterial sugar transferase NQ562_02295 PF00483 Nucleotidyl transferase NQ562_02300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NQ562_02300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NQ562_02305 PF00465 Iron-containing alcohol dehydrogenase NQ562_02310 PF00753 Metallo-beta-lactamase superfamily NQ562_02310 PF00258 Flavodoxin NQ562_02315 PF00301 Rubredoxin NQ562_02335 PF17910 FeoB cytosolic helical domain NQ562_02335 PF02421 Ferrous iron transport protein B NQ562_02335 PF07670 Nucleoside recognition NQ562_02335 PF07664 Ferrous iron transport protein B C terminus NQ562_02355 PF00557 Metallopeptidase family M24 NQ562_02370 PF00860 Permease family NQ562_02375 PF01171 PP-loop family NQ562_02380 PF00580 UvrD/REP helicase N-terminal domain NQ562_02380 PF13361 UvrD-like helicase C-terminal domain NQ562_02385 PF12826 Helix-hairpin-helix motif NQ562_02385 PF00533 BRCA1 C Terminus (BRCT) domain NQ562_02385 PF01653 NAD-dependent DNA ligase adenylation domain NQ562_02385 PF03120 NAD-dependent DNA ligase OB-fold domain NQ562_02385 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NQ562_02395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NQ562_02395 PF02811 PHP domain NQ562_02395 PF00929 Exonuclease NQ562_02395 PF14579 Helix-hairpin-helix motif NQ562_02395 PF11490 DNA polymerase III polC-type N-terminus II NQ562_02395 PF07733 Bacterial DNA polymerase III alpha NTPase domain NQ562_02395 PF14480 DNA polymerase III polC-type N-terminus I NQ562_02400 PF02554 Carbon starvation protein CstA NQ562_02400 PF13722 5TM C-terminal transporter carbon starvation CstA NQ562_02405 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NQ562_02405 PF00056 lactate/malate dehydrogenase, NAD binding domain NQ562_02410 PF01557 Fumarylacetoacetate (FAA) hydrolase family NQ562_02420 PF09861 Lactate racemase N-terminal domain NQ562_02480 PF01555 DNA methylase NQ562_02505 PF01131 DNA topoisomerase NQ562_02505 PF01751 Toprim domain NQ562_02510 PF18840 Large polyvalent protein associated domain 25 NQ562_02535 PF03432 Relaxase/Mobilisation nuclease domain NQ562_02555 PF04055 Radical SAM superfamily NQ562_02590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NQ562_02595 PF02562 PhoH-like protein NQ562_02600 PF02130 Uncharacterized protein family UPF0054 NQ562_02605 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NQ562_02610 PF07650 KH domain NQ562_02610 PF01926 50S ribosome-binding GTPase NQ562_02615 PF00571 CBS domain NQ562_02615 PF03471 Transporter associated domain NQ562_02615 PF01595 Cyclin M transmembrane N-terminal domain NQ562_02630 PF03372 Endonuclease/Exonuclease/phosphatase family NQ562_02640 PF00293 NUDIX domain NQ562_02650 PF01790 Prolipoprotein diacylglyceryl transferase NQ562_02660 PF09334 tRNA synthetases class I (M) NQ562_02660 PF08264 Anticodon-binding domain of tRNA NQ562_02660 PF13603 Leucyl-tRNA synthetase, Domain 2 NQ562_02660 PF00133 tRNA synthetases class I (I, L, M and V) NQ562_02665 PF10531 SLBB domain NQ562_02670 PF03772 Competence protein NQ562_02670 PF13567 Domain of unknown function (DUF4131) NQ562_02670 PF00753 Metallo-beta-lactamase superfamily NQ562_02680 PF03616 Sodium/glutamate symporter NQ562_02690 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NQ562_02690 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NQ562_02695 PF08544 GHMP kinases C terminal NQ562_02695 PF00288 GHMP kinases N terminal domain NQ562_02700 PF00392 Bacterial regulatory proteins, gntR family NQ562_02700 PF07729 FCD domain NQ562_02705 PF00156 Phosphoribosyl transferase domain NQ562_02705 PF09182 Bacterial purine repressor, N-terminal NQ562_02710 PF13291 ACT domain NQ562_02710 PF00291 Pyridoxal-phosphate dependent enzyme NQ562_02715 PF00132 Bacterial transferase hexapeptide (six repeats) NQ562_02715 PF12804 MobA-like NTP transferase domain NQ562_02720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NQ562_02720 PF14572 Phosphoribosyl synthetase-associated domain NQ562_02725 PF01195 Peptidyl-tRNA hydrolase NQ562_02730 PF03313 Serine dehydratase alpha chain NQ562_02735 PF01842 ACT domain NQ562_02735 PF03315 Serine dehydratase beta chain NQ562_02740 PF00375 Sodium:dicarboxylate symporter family NQ562_02745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_02745 PF03466 LysR substrate binding domain NQ562_02750 PF01197 Ribosomal protein L31 NQ562_02755 PF07136 Protein of unknown function (DUF1385) NQ562_02760 PF03462 PCRF domain NQ562_02760 PF00472 RF-1 domain NQ562_02765 PF17827 PrmC N-terminal domain NQ562_02765 PF05175 Methyltransferase small domain NQ562_02770 PF03481 Putative GTP-binding controlling metal-binding NQ562_02770 PF01300 Telomere recombination NQ562_02775 PF02502 Ribose/Galactose Isomerase NQ562_02780 PF04260 Protein of unknown function (DUF436) NQ562_02790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NQ562_02805 PF00180 Isocitrate/isopropylmalate dehydrogenase NQ562_02825 PF00582 Universal stress protein family NQ562_02830 PF00582 Universal stress protein family NQ562_02835 PF00582 Universal stress protein family NQ562_02840 PF00582 Universal stress protein family NQ562_02845 PF08264 Anticodon-binding domain of tRNA NQ562_02845 PF10458 Valyl tRNA synthetase tRNA binding arm NQ562_02845 PF00133 tRNA synthetases class I (I, L, M and V) NQ562_02850 PF02875 Mur ligase family, glutamate ligase domain NQ562_02850 PF08245 Mur ligase middle domain NQ562_02860 PF04223 Citrate lyase, alpha subunit (CitF) NQ562_02865 PF03328 HpcH/HpaI aldolase/citrate lyase family NQ562_02870 PF06857 Malonate decarboxylase delta subunit (MdcD) NQ562_02875 PF03466 LysR substrate binding domain NQ562_02875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_02880 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NQ562_02885 PF03600 Citrate transporter NQ562_02900 PF01527 Transposase NQ562_02905 PF13333 Integrase core domain NQ562_02905 PF13276 HTH-like domain NQ562_02905 PF00665 Integrase core domain NQ562_02910 PF13416 Bacterial extracellular solute-binding protein NQ562_02915 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_02920 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_02925 PF00005 ABC transporter NQ562_02925 PF08402 TOBE domain NQ562_02935 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NQ562_02935 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NQ562_02940 PF01638 HxlR-like helix-turn-helix NQ562_02945 PF07687 Peptidase dimerisation domain NQ562_02945 PF01546 Peptidase family M20/M25/M40 NQ562_02965 PF03606 C4-dicarboxylate anaerobic carrier NQ562_02970 PF07687 Peptidase dimerisation domain NQ562_02970 PF01546 Peptidase family M20/M25/M40 NQ562_02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_02975 PF03466 LysR substrate binding domain NQ562_02980 PF00330 Aconitase family (aconitate hydratase) NQ562_02985 PF10282 Lactonase, 7-bladed beta-propeller NQ562_02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_02995 PF03466 LysR substrate binding domain NQ562_03005 PF00881 Nitroreductase family NQ562_03020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_03020 PF03466 LysR substrate binding domain NQ562_03025 PF03358 NADPH-dependent FMN reductase NQ562_03030 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NQ562_03035 PF01047 MarR family NQ562_03045 PF01177 Asp/Glu/Hydantoin racemase NQ562_03060 PF07687 Peptidase dimerisation domain NQ562_03060 PF01546 Peptidase family M20/M25/M40 NQ562_03065 PF01070 FMN-dependent dehydrogenase NQ562_03075 PF07670 Nucleoside recognition NQ562_03080 PF09339 IclR helix-turn-helix domain NQ562_03080 PF01614 Bacterial transcriptional regulator NQ562_03085 PF07670 Nucleoside recognition NQ562_03095 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NQ562_03095 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NQ562_03095 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NQ562_03110 PF02515 CoA-transferase family III NQ562_03115 PF02684 Lipid-A-disaccharide synthetase NQ562_03120 PF00664 ABC transporter transmembrane region NQ562_03120 PF00005 ABC transporter NQ562_03125 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NQ562_03130 PF02348 Cytidylyltransferase NQ562_03135 PF00793 DAHP synthetase I family NQ562_03140 PF00571 CBS domain NQ562_03140 PF01380 SIS domain NQ562_03165 PF00005 ABC transporter NQ562_03175 PF02229 Transcriptional Coactivator p15 (PC4) NQ562_03180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NQ562_03190 PF01368 DHH family NQ562_03190 PF02272 DHHA1 domain NQ562_03190 PF17768 RecJ OB domain NQ562_03190 PF10141 Single-strand DNA-specific exonuclease, C terminal domain NQ562_03195 PF02824 TGS domain NQ562_03195 PF04607 Region found in RelA / SpoT proteins NQ562_03195 PF13291 ACT domain NQ562_03200 PF02580 D-Tyr-tRNA(Tyr) deacylase NQ562_03205 PF00753 Metallo-beta-lactamase superfamily NQ562_03210 PF01594 AI-2E family transporter NQ562_03215 PF03129 Anticodon binding domain NQ562_03215 PF13393 Histidyl-tRNA synthetase NQ562_03220 PF02938 GAD domain NQ562_03220 PF00152 tRNA synthetases class II (D, K and N) NQ562_03220 PF01336 OB-fold nucleic acid binding domain NQ562_03230 PF01252 Signal peptidase (SPase) II NQ562_03235 PF01479 S4 domain NQ562_03235 PF00849 RNA pseudouridylate synthase NQ562_03240 PF00156 Phosphoribosyl transferase domain NQ562_03245 PF06470 SMC proteins Flexible Hinge Domain NQ562_03245 PF02463 RecF/RecN/SMC N terminal domain NQ562_03250 PF00448 SRP54-type protein, GTPase domain NQ562_03250 PF02881 SRP54-type protein, helical bundle domain NQ562_03255 PF00085 Thioredoxin NQ562_03265 PF04402 Protein of unknown function (DUF541) NQ562_03270 PF01048 Phosphorylase superfamily NQ562_03280 PF03797 Autotransporter beta-domain NQ562_03280 PF03212 Pertactin NQ562_03330 PF01555 DNA methylase NQ562_03330 PF18273 Type III R-M EcoP15I C-terminal domain NQ562_03340 PF08774 VRR-NUC domain NQ562_03340 PF04851 Type III restriction enzyme, res subunit NQ562_03345 PF01451 Low molecular weight phosphotyrosine protein phosphatase NQ562_03350 PF01966 HD domain NQ562_03360 PF00005 ABC transporter NQ562_03360 PF17755 UvrA DNA-binding domain NQ562_03360 PF17760 UvrA interaction domain NQ562_03385 PF07690 Major Facilitator Superfamily NQ562_03390 PF00679 Elongation factor G C-terminus NQ562_03390 PF14492 Elongation Factor G, domain II NQ562_03390 PF03764 Elongation factor G, domain IV NQ562_03390 PF00009 Elongation factor Tu GTP binding domain NQ562_03400 PF08241 Methyltransferase domain NQ562_03405 PF04542 Sigma-70 region 2 NQ562_03405 PF04539 Sigma-70 region 3 NQ562_03405 PF04545 Sigma-70, region 4 NQ562_03435 PF01695 IstB-like ATP binding protein NQ562_03450 PF07690 Major Facilitator Superfamily NQ562_03465 PF01047 MarR family NQ562_03470 PF01259 SAICAR synthetase NQ562_03480 PF05167 Uncharacterised ACR (DUF711) NQ562_03485 PF10576 Iron-sulfur binding domain of endonuclease III NQ562_03485 PF00633 Helix-hairpin-helix motif NQ562_03485 PF00730 HhH-GPD superfamily base excision DNA repair protein NQ562_03500 PF12833 Helix-turn-helix domain NQ562_03505 PF07687 Peptidase dimerisation domain NQ562_03505 PF01546 Peptidase family M20/M25/M40 NQ562_03515 PF00291 Pyridoxal-phosphate dependent enzyme NQ562_03520 PF01235 Sodium:alanine symporter family NQ562_03525 PF01546 Peptidase family M20/M25/M40 NQ562_03525 PF07687 Peptidase dimerisation domain NQ562_03535 PF02803 Thiolase, C-terminal domain NQ562_03535 PF00108 Thiolase, N-terminal domain NQ562_03540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NQ562_03540 PF02770 Acyl-CoA dehydrogenase, middle domain NQ562_03540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NQ562_03545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NQ562_03545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NQ562_03550 PF00378 Enoyl-CoA hydratase/isomerase NQ562_03555 PF02127 Aminopeptidase I zinc metalloprotease (M18) NQ562_03560 PF00171 Aldehyde dehydrogenase family NQ562_03570 PF01205 Uncharacterized protein family UPF0029 NQ562_03570 PF09186 Domain of unknown function (DUF1949) NQ562_03585 PF04393 Protein of unknown function (DUF535) NQ562_03595 PF00395 S-layer homology domain NQ562_03600 PF00395 S-layer homology domain NQ562_03610 PF00375 Sodium:dicarboxylate symporter family NQ562_03615 PF08348 YheO-like PAS domain NQ562_03615 PF13309 HTH domain NQ562_03630 PF00005 ABC transporter NQ562_03630 PF12848 ABC transporter NQ562_03670 PF02915 Rubrerythrin NQ562_03675 PF00301 Rubredoxin NQ562_03675 PF00258 Flavodoxin NQ562_03675 PF00753 Metallo-beta-lactamase superfamily NQ562_03685 PF02540 NAD synthase NQ562_03685 PF00795 Carbon-nitrogen hydrolase NQ562_03690 PF14821 Threonine synthase N terminus NQ562_03690 PF00291 Pyridoxal-phosphate dependent enzyme NQ562_03695 PF02906 Iron only hydrogenase large subunit, C-terminal domain NQ562_03695 PF02256 Iron hydrogenase small subunit NQ562_03695 PF12838 4Fe-4S dicluster domain NQ562_03700 PF01709 Transcriptional regulator NQ562_03705 PF02075 Crossover junction endodeoxyribonuclease RuvC NQ562_03710 PF01330 RuvA N terminal domain NQ562_03710 PF07499 RuvA, C-terminal domain NQ562_03715 PF05496 Holliday junction DNA helicase RuvB P-loop domain NQ562_03715 PF17864 RuvB AAA lid domain NQ562_03715 PF05491 RuvB C-terminal winged helix domain NQ562_03720 PF02677 Epoxyqueuosine reductase QueH NQ562_03725 PF08486 Stage II sporulation protein NQ562_03730 PF02547 Queuosine biosynthesis protein NQ562_03735 PF01702 Queuine tRNA-ribosyltransferase NQ562_03740 PF02699 Preprotein translocase subunit NQ562_03750 PF07549 SecD/SecF GG Motif NQ562_03750 PF02355 Protein export membrane protein NQ562_03755 PF02355 Protein export membrane protein NQ562_03755 PF07549 SecD/SecF GG Motif NQ562_03785 PF12127 SigmaW regulon antibacterial NQ562_03795 PF13419 Haloacid dehalogenase-like hydrolase NQ562_03800 PF00571 CBS domain NQ562_03800 PF03471 Transporter associated domain NQ562_03800 PF01595 Cyclin M transmembrane N-terminal domain NQ562_03820 PF06961 Protein of unknown function (DUF1294) NQ562_03825 PF01336 OB-fold nucleic acid binding domain NQ562_03825 PF07733 Bacterial DNA polymerase III alpha NTPase domain NQ562_03825 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NQ562_03825 PF14579 Helix-hairpin-helix motif NQ562_03825 PF02811 PHP domain NQ562_03830 PF01012 Electron transfer flavoprotein domain NQ562_03835 PF00766 Electron transfer flavoprotein FAD-binding domain NQ562_03835 PF01012 Electron transfer flavoprotein domain NQ562_03840 PF00391 PEP-utilising enzyme, mobile domain NQ562_03840 PF00224 Pyruvate kinase, barrel domain NQ562_03840 PF02887 Pyruvate kinase, alpha/beta domain NQ562_03860 PF02080 TrkA-C domain NQ562_03860 PF02254 TrkA-N domain NQ562_03865 PF02386 Cation transport protein NQ562_03880 PF04452 RNA methyltransferase NQ562_03885 PF04055 Radical SAM superfamily NQ562_03885 PF00919 Uncharacterized protein family UPF0004 NQ562_03885 PF01938 TRAM domain NQ562_03890 PF01230 HIT domain NQ562_03895 PF01165 Ribosomal protein S21 NQ562_03900 PF09424 Yqey-like protein NQ562_03915 PF07859 alpha/beta hydrolase fold NQ562_03935 PF00578 AhpC/TSA family NQ562_03940 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ562_03960 PF01467 Cytidylyltransferase-like NQ562_03975 PF05636 HIGH Nucleotidyl Transferase NQ562_03980 PF00871 Acetokinase family NQ562_03990 PF01783 Ribosomal L32p protein family NQ562_03995 PF03061 Thioesterase superfamily NQ562_04000 PF02504 Fatty acid synthesis protein NQ562_04005 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NQ562_04005 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NQ562_04010 PF00698 Acyl transferase domain NQ562_04020 PF00550 Phosphopantetheine attachment site NQ562_04025 PF03060 Nitronate monooxygenase NQ562_04030 PF00109 Beta-ketoacyl synthase, N-terminal domain NQ562_04030 PF02801 Beta-ketoacyl synthase, C-terminal domain NQ562_04035 PF14622 Ribonuclease-III-like NQ562_04035 PF00035 Double-stranded RNA binding motif NQ562_04040 PF00583 Acetyltransferase (GNAT) family NQ562_04040 PF04055 Radical SAM superfamily NQ562_04040 PF16199 Radical_SAM C-terminal domain NQ562_04045 PF02272 DHHA1 domain NQ562_04045 PF01411 tRNA synthetases class II (A) NQ562_04045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NQ562_04050 PF00318 Ribosomal protein S2 NQ562_04055 PF00889 Elongation factor TS NQ562_04060 PF00696 Amino acid kinase family NQ562_04065 PF01765 Ribosome recycling factor NQ562_04080 PF01255 Putative undecaprenyl diphosphate synthase NQ562_04090 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NQ562_04090 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NQ562_04090 PF13288 DXP reductoisomerase C-terminal domain NQ562_04095 PF17820 PDZ domain NQ562_04095 PF02163 Peptidase family M50 NQ562_04100 PF04551 GcpE protein NQ562_04105 PF03129 Anticodon binding domain NQ562_04105 PF04073 Aminoacyl-tRNA editing domain NQ562_04105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NQ562_04110 PF02308 MgtC family NQ562_04115 PF01336 OB-fold nucleic acid binding domain NQ562_04115 PF14579 Helix-hairpin-helix motif NQ562_04115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NQ562_04115 PF07733 Bacterial DNA polymerase III alpha NTPase domain NQ562_04115 PF11490 DNA polymerase III polC-type N-terminus II NQ562_04115 PF00929 Exonuclease NQ562_04115 PF02811 PHP domain NQ562_04125 PF10996 Beta-Casp domain NQ562_04125 PF00753 Metallo-beta-lactamase superfamily NQ562_04125 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NQ562_04130 PF00679 Elongation factor G C-terminus NQ562_04130 PF00009 Elongation factor Tu GTP binding domain NQ562_04130 PF03144 Elongation factor Tu domain 2 NQ562_04145 PF02576 RimP N-terminal domain NQ562_04145 PF17384 RimP C-terminal SH3 domain NQ562_04150 PF00575 S1 RNA binding domain NQ562_04150 PF13184 NusA-like KH domain NQ562_04150 PF08529 NusA N-terminal domain NQ562_04155 PF04296 Protein of unknown function (DUF448) NQ562_04160 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NQ562_04165 PF04760 Translation initiation factor IF-2, N-terminal region NQ562_04165 PF00009 Elongation factor Tu GTP binding domain NQ562_04165 PF11987 Translation-initiation factor 2 NQ562_04165 PF04760 Translation initiation factor IF-2, N-terminal region NQ562_04165 PF11987 Translation-initiation factor 2 NQ562_04165 PF00009 Elongation factor Tu GTP binding domain NQ562_04170 PF02033 Ribosome-binding factor A NQ562_04175 PF02272 DHHA1 domain NQ562_04175 PF01368 DHH family NQ562_04180 PF01509 TruB family pseudouridylate synthase (N terminal domain) NQ562_04180 PF16198 tRNA pseudouridylate synthase B C-terminal domain NQ562_04185 PF06574 FAD synthetase NQ562_04185 PF01687 Riboflavin kinase NQ562_04190 PF00312 Ribosomal protein S15 NQ562_04195 PF01546 Peptidase family M20/M25/M40 NQ562_04195 PF07687 Peptidase dimerisation domain NQ562_04205 PF00005 ABC transporter NQ562_04210 PF03649 Uncharacterised protein family (UPF0014) NQ562_04215 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NQ562_04215 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain NQ562_04215 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NQ562_04225 PF03466 LysR substrate binding domain NQ562_04225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_04230 PF13378 Enolase C-terminal domain-like NQ562_04235 PF02447 GntP family permease NQ562_04240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NQ562_04240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NQ562_04250 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NQ562_04250 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NQ562_04250 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NQ562_04255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ562_04265 PF00920 Dehydratase family NQ562_04280 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NQ562_04280 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NQ562_04285 PF03358 NADPH-dependent FMN reductase NQ562_04295 PF01554 MatE NQ562_04305 PF07286 Protein of unknown function (DUF1445) NQ562_04310 PF03641 Possible lysine decarboxylase NQ562_04315 PF12850 Calcineurin-like phosphoesterase superfamily domain NQ562_04325 PF03972 MmgE/PrpD family NQ562_04330 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ562_04335 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_04340 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_04345 PF00005 ABC transporter NQ562_04350 PF00583 Acetyltransferase (GNAT) family NQ562_04360 PF00155 Aminotransferase class I and II NQ562_04365 PF05662 Coiled stalk of trimeric autotransporter adhesin NQ562_04365 PF05658 Head domain of trimeric autotransporter adhesin NQ562_04365 PF03895 YadA-like membrane anchor domain NQ562_04375 PF06968 Biotin and Thiamin Synthesis associated domain NQ562_04375 PF04055 Radical SAM superfamily NQ562_04380 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NQ562_04380 PF08666 SAF domain NQ562_04395 PF02381 MraZ protein, putative antitoxin-like NQ562_04400 PF01795 MraW methylase family NQ562_04405 PF04999 Cell division protein FtsL NQ562_04410 PF01225 Mur ligase family, catalytic domain NQ562_04410 PF08245 Mur ligase middle domain NQ562_04410 PF02875 Mur ligase family, glutamate ligase domain NQ562_04415 PF08245 Mur ligase middle domain NQ562_04415 PF02875 Mur ligase family, glutamate ligase domain NQ562_04415 PF01225 Mur ligase family, catalytic domain NQ562_04420 PF00953 Glycosyl transferase family 4 NQ562_04425 PF08245 Mur ligase middle domain NQ562_04425 PF02875 Mur ligase family, glutamate ligase domain NQ562_04430 PF04101 Glycosyltransferase family 28 C-terminal domain NQ562_04430 PF03033 Glycosyltransferase family 28 N-terminal domain NQ562_04435 PF02875 Mur ligase family, glutamate ligase domain NQ562_04435 PF01225 Mur ligase family, catalytic domain NQ562_04435 PF08245 Mur ligase middle domain NQ562_04440 PF01820 D-ala D-ala ligase N-terminus NQ562_04440 PF07478 D-ala D-ala ligase C-terminus NQ562_04450 PF05949 Bacterial protein of unknown function (DUF881) NQ562_04455 PF06947 Protein of unknown function (DUF1290) NQ562_04460 PF00091 Tubulin/FtsZ family, GTPase domain NQ562_04460 PF12327 FtsZ family, C-terminal domain NQ562_04465 PF03477 ATP cone domain NQ562_04480 PF07963 Prokaryotic N-terminal methylation motif NQ562_04480 PF08334 Type II secretion system (T2SS), protein G NQ562_04510 PF13276 HTH-like domain NQ562_04510 PF00665 Integrase core domain NQ562_04510 PF13333 Integrase core domain NQ562_04515 PF01527 Transposase NQ562_04520 PF05670 NFACT protein RNA binding domain NQ562_04530 PF03755 YicC-like family, N-terminal region NQ562_04530 PF08340 Domain of unknown function (DUF1732) NQ562_04535 PF04025 Domain of unknown function (DUF370) NQ562_04540 PF00625 Guanylate kinase NQ562_04545 PF01192 RNA polymerase Rpb6 NQ562_04550 PF04127 DNA / pantothenate metabolism flavoprotein NQ562_04550 PF02441 Flavoprotein NQ562_04570 PF06968 Biotin and Thiamin Synthesis associated domain NQ562_04570 PF04055 Radical SAM superfamily NQ562_04600 PF00892 EamA-like transporter family NQ562_04625 PF13344 Haloacid dehalogenase-like hydrolase NQ562_04630 PF00209 Sodium:neurotransmitter symporter family NQ562_04640 PF05726 Pirin C-terminal cupin domain NQ562_04640 PF02678 Pirin NQ562_04645 PF00375 Sodium:dicarboxylate symporter family NQ562_04650 PF04198 Putative sugar-binding domain NQ562_04655 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NQ562_04655 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NQ562_04660 PF00162 Phosphoglycerate kinase NQ562_04660 PF00121 Triosephosphate isomerase NQ562_04665 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NQ562_04665 PF01676 Metalloenzyme superfamily NQ562_04670 PF00113 Enolase, C-terminal TIM barrel domain NQ562_04670 PF03952 Enolase, N-terminal domain NQ562_04675 PF01380 SIS domain NQ562_04690 PF01565 FAD binding domain NQ562_04690 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NQ562_04700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NQ562_04705 PF01022 Bacterial regulatory protein, arsR family NQ562_04710 PF03466 LysR substrate binding domain NQ562_04710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_04715 PF00390 Malic enzyme, N-terminal domain NQ562_04715 PF03949 Malic enzyme, NAD binding domain NQ562_04745 PF12706 Beta-lactamase superfamily domain NQ562_04750 PF00474 Sodium:solute symporter family NQ562_04755 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NQ562_04760 PF00588 SpoU rRNA Methylase family NQ562_04765 PF01242 6-pyruvoyl tetrahydropterin synthase NQ562_04770 PF02649 Type I GTP cyclohydrolase folE2 NQ562_04775 PF00809 Pterin binding enzyme NQ562_04780 PF02152 Dihydroneopterin aldolase NQ562_04780 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NQ562_04800 PF07687 Peptidase dimerisation domain NQ562_04800 PF01546 Peptidase family M20/M25/M40 NQ562_04805 PF00860 Permease family NQ562_04810 PF00117 Glutamine amidotransferase class-I NQ562_04810 PF00958 GMP synthase C terminal domain NQ562_04815 PF00248 Aldo/keto reductase family NQ562_04825 PF00248 Aldo/keto reductase family NQ562_04830 PF00005 ABC transporter NQ562_04840 PF06736 Protein of unknown function (DUF1211) NQ562_04845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_04845 PF03466 LysR substrate binding domain NQ562_04855 PF00248 Aldo/keto reductase family NQ562_04860 PF01613 Flavin reductase like domain NQ562_04875 PF07690 Major Facilitator Superfamily NQ562_04880 PF03051 Peptidase C1-like family NQ562_04890 PF09297 NADH pyrophosphatase zinc ribbon domain NQ562_04890 PF00293 NUDIX domain NQ562_04895 PF02001 Protein of unknown function DUF134 NQ562_04910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NQ562_04910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NQ562_04915 PF02805 Metal binding domain of Ada NQ562_04915 PF06029 AlkA N-terminal domain NQ562_04915 PF00730 HhH-GPD superfamily base excision DNA repair protein NQ562_04915 PF12833 Helix-turn-helix domain NQ562_04920 PF04794 YdjC-like protein NQ562_04925 PF00294 pfkB family carbohydrate kinase NQ562_04930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NQ562_04930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NQ562_04935 PF13333 Integrase core domain NQ562_04935 PF00665 Integrase core domain NQ562_04935 PF13276 HTH-like domain NQ562_04940 PF01527 Transposase NQ562_04975 PF01235 Sodium:alanine symporter family NQ562_04980 PF02574 Homocysteine S-methyltransferase NQ562_04985 PF00578 AhpC/TSA family NQ562_05000 PF17910 FeoB cytosolic helical domain NQ562_05000 PF07664 Ferrous iron transport protein B C terminus NQ562_05000 PF07670 Nucleoside recognition NQ562_05000 PF02421 Ferrous iron transport protein B NQ562_05010 PF00403 Heavy-metal-associated domain NQ562_05015 PF01118 Semialdehyde dehydrogenase, NAD binding domain NQ562_05020 PF02915 Rubrerythrin NQ562_05025 PF00072 Response regulator receiver domain NQ562_05025 PF00486 Transcriptional regulatory protein, C terminal NQ562_05030 PF00672 HAMP domain NQ562_05030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ562_05030 PF00512 His Kinase A (phospho-acceptor) domain NQ562_05040 PF06133 Control of competence regulator ComK, YlbF/YmcA NQ562_05045 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NQ562_05045 PF01565 FAD binding domain NQ562_05050 PF12705 PD-(D/E)XK nuclease superfamily NQ562_05055 PF00580 UvrD/REP helicase N-terminal domain NQ562_05055 PF12705 PD-(D/E)XK nuclease superfamily NQ562_05055 PF13361 UvrD-like helicase C-terminal domain NQ562_05060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_05060 PF03466 LysR substrate binding domain NQ562_05065 PF02567 Phenazine biosynthesis-like protein NQ562_05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_05075 PF03466 LysR substrate binding domain NQ562_05085 PF00375 Sodium:dicarboxylate symporter family NQ562_05095 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ562_05105 PF00155 Aminotransferase class I and II NQ562_05105 PF00392 Bacterial regulatory proteins, gntR family NQ562_05110 PF02567 Phenazine biosynthesis-like protein NQ562_05115 PF01042 Endoribonuclease L-PSP NQ562_05120 PF00107 Zinc-binding dehydrogenase NQ562_05120 PF08240 Alcohol dehydrogenase GroES-like domain NQ562_05130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NQ562_05130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NQ562_05135 PF01758 Sodium Bile acid symporter family NQ562_05140 PF02261 Aspartate decarboxylase NQ562_05145 PF02569 Pantoate-beta-alanine ligase NQ562_05210 PF09588 YqaJ-like viral recombinase domain NQ562_05215 PF03837 RecT family NQ562_05235 PF05866 Endodeoxyribonuclease RusA NQ562_05270 PF04466 Phage terminase large subunit NQ562_05270 PF17288 Terminase RNAseH like domain NQ562_05440 PF17876 Cold shock domain NQ562_05440 PF00773 RNB domain NQ562_05440 PF00575 S1 RNA binding domain NQ562_05440 PF08206 Ribonuclease B OB domain NQ562_05445 PF01668 SmpB protein NQ562_05450 PF06397 Desulfoferrodoxin, N-terminal domain NQ562_05450 PF01880 Desulfoferrodoxin NQ562_05455 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NQ562_05455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NQ562_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_05460 PF03466 LysR substrate binding domain NQ562_05465 PF04303 PrpF protein NQ562_05475 PF00180 Isocitrate/isopropylmalate dehydrogenase NQ562_05475 PF18324 Hypothetical protein TT1725 NQ562_05480 PF00330 Aconitase family (aconitate hydratase) NQ562_05480 PF00694 Aconitase C-terminal domain NQ562_05485 PF00155 Aminotransferase class I and II NQ562_05490 PF01411 tRNA synthetases class II (A) NQ562_05490 PF02272 DHHA1 domain NQ562_05490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NQ562_05500 PF06135 IreB regulatory phosphoprotein NQ562_05505 PF03652 Holliday junction resolvase NQ562_05510 PF06949 Protein of unknown function (DUF1292) NQ562_05515 PF02618 YceG-like family NQ562_05520 PF01136 Peptidase family U32 NQ562_05520 PF16325 Peptidase family U32 C-terminal domain NQ562_05525 PF01321 Creatinase/Prolidase N-terminal domain NQ562_05525 PF00557 Metallopeptidase family M24 NQ562_05530 PF01132 Elongation factor P (EF-P) OB domain NQ562_05530 PF08207 Elongation factor P (EF-P) KOW-like domain NQ562_05530 PF09285 Elongation factor P, C-terminal NQ562_05535 PF00300 Histidine phosphatase superfamily (branch 1) NQ562_05550 PF00586 AIR synthase related protein, N-terminal domain NQ562_05550 PF02769 AIR synthase related protein, C-terminal domain NQ562_05550 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NQ562_05555 PF08367 Peptidase M16C associated NQ562_05555 PF00675 Insulinase (Peptidase family M16) NQ562_05555 PF05193 Peptidase M16 inactive domain NQ562_05560 PF03749 Sugar fermentation stimulation protein RE domain NQ562_05560 PF17746 SfsA N-terminal OB domain NQ562_05565 PF12631 MnmE helical domain NQ562_05565 PF01926 50S ribosome-binding GTPase NQ562_05565 PF10396 GTP-binding protein TrmE N-terminus NQ562_05570 PF02481 DNA recombination-mediator protein A NQ562_05570 PF17782 DprA winged helix domain NQ562_05575 PF01131 DNA topoisomerase NQ562_05575 PF01751 Toprim domain NQ562_05575 PF01396 Topoisomerase DNA binding C4 zinc finger NQ562_05580 PF01134 Glucose inhibited division protein A NQ562_05585 PF00589 Phage integrase family NQ562_05585 PF02899 Phage integrase, N-terminal SAM-like domain NQ562_05590 PF08222 CodY helix-turn-helix domain NQ562_05590 PF06018 CodY GAF-like domain NQ562_05595 PF02163 Peptidase family M50 NQ562_05600 PF02616 Segregation and condensation protein ScpA NQ562_05605 PF04079 Segregation and condensation complex subunit ScpB NQ562_05610 PF01479 S4 domain NQ562_05610 PF00849 RNA pseudouridylate synthase NQ562_05620 PF02224 Cytidylate kinase NQ562_05625 PF01553 Acyltransferase NQ562_05630 PF00575 S1 RNA binding domain NQ562_05630 PF02401 LytB protein NQ562_05635 PF01070 FMN-dependent dehydrogenase NQ562_05640 PF01926 50S ribosome-binding GTPase NQ562_05640 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NQ562_05645 PF02660 Glycerol-3-phosphate acyltransferase NQ562_05650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NQ562_05650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NQ562_05660 PF00742 Homoserine dehydrogenase NQ562_05660 PF03447 Homoserine dehydrogenase, NAD binding domain NQ562_05660 PF01842 ACT domain NQ562_05665 PF00288 GHMP kinases N terminal domain NQ562_05665 PF08544 GHMP kinases C terminal NQ562_05675 PF03144 Elongation factor Tu domain 2 NQ562_05675 PF16658 Class II release factor RF3, C-terminal domain NQ562_05675 PF00009 Elongation factor Tu GTP binding domain NQ562_05680 PF03808 Glycosyl transferase WecB/TagA/CpsF family NQ562_05685 PF02666 Phosphatidylserine decarboxylase NQ562_05710 PF07687 Peptidase dimerisation domain NQ562_05710 PF01546 Peptidase family M20/M25/M40 NQ562_05715 PF13419 Haloacid dehalogenase-like hydrolase NQ562_05720 PF01048 Phosphorylase superfamily NQ562_05725 PF01979 Amidohydrolase family NQ562_05735 PF00717 Peptidase S24-like NQ562_05735 PF01726 LexA DNA binding domain NQ562_05745 PF06838 Methionine gamma-lyase NQ562_05750 PF13167 GTP-binding GTPase N-terminal NQ562_05750 PF16360 GTP-binding GTPase Middle Region NQ562_05750 PF01926 50S ribosome-binding GTPase NQ562_05755 PF00270 DEAD/DEAH box helicase NQ562_05755 PF00271 Helicase conserved C-terminal domain NQ562_05760 PF02464 Competence-damaged protein NQ562_05760 PF18146 Damage-inducible protein CinA KH domain NQ562_05760 PF00994 Probable molybdopterin binding domain NQ562_05765 PF04055 Radical SAM superfamily NQ562_05765 PF00919 Uncharacterized protein family UPF0004 NQ562_05765 PF18693 TRAM domain NQ562_05770 PF13464 Domain of unknown function (DUF4115) NQ562_05775 PF17854 FtsK alpha domain NQ562_05775 PF09397 Ftsk gamma domain NQ562_05775 PF01580 FtsK/SpoIIIE family NQ562_05780 PF17770 Ribonuclease J C-terminal domain NQ562_05780 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NQ562_05780 PF00753 Metallo-beta-lactamase superfamily NQ562_05790 PF16363 GDP-mannose 4,6 dehydratase NQ562_05800 PF11858 Domain of unknown function (DUF3378) NQ562_05800 PF01351 Ribonuclease HII NQ562_05810 PF02811 PHP domain NQ562_05815 PF00701 Dihydrodipicolinate synthetase family NQ562_05820 PF00696 Amino acid kinase family NQ562_05820 PF13840 ACT domain NQ562_05825 PF01118 Semialdehyde dehydrogenase, NAD binding domain NQ562_05825 PF02774 Semialdehyde dehydrogenase, dimerisation domain NQ562_05830 PF05173 Dihydrodipicolinate reductase, C-terminus NQ562_05830 PF01113 Dihydrodipicolinate reductase, N-terminus NQ562_05840 PF00692 dUTPase NQ562_05850 PF00849 RNA pseudouridylate synthase NQ562_05855 PF01116 Fructose-bisphosphate aldolase class-II NQ562_05875 PF01970 Tripartite tricarboxylate transporter TctA family NQ562_05885 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_05890 PF00005 ABC transporter NQ562_05905 PF04232 Stage V sporulation protein S (SpoVS) NQ562_05910 PF00293 NUDIX domain NQ562_05915 PF02463 RecF/RecN/SMC N terminal domain NQ562_05920 PF02863 Arginine repressor, C-terminal domain NQ562_05920 PF01316 Arginine repressor, DNA binding domain NQ562_05925 PF01513 ATP-NAD kinase NQ562_05930 PF01728 FtsJ-like methyltransferase NQ562_05930 PF01479 S4 domain NQ562_05935 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NQ562_05935 PF02779 Transketolase, pyrimidine binding domain NQ562_05935 PF02780 Transketolase, C-terminal domain NQ562_05940 PF00348 Polyprenyl synthetase NQ562_05945 PF02609 Exonuclease VII small subunit NQ562_05950 PF13742 OB-fold nucleic acid binding domain NQ562_05950 PF02601 Exonuclease VII, large subunit NQ562_05955 PF00814 Glycoprotease family NQ562_05960 PF01029 NusB family NQ562_05980 PF03616 Sodium/glutamate symporter NQ562_05990 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NQ562_05990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NQ562_05995 PF00871 Acetokinase family NQ562_06000 PF03390 2-hydroxycarboxylate transporter family NQ562_06005 PF01515 Phosphate acetyl/butaryl transferase NQ562_06010 PF00330 Aconitase family (aconitate hydratase) NQ562_06020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ562_06020 PF10371 Domain of unknown function NQ562_06020 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NQ562_06020 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NQ562_06020 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NQ562_06025 PF07859 alpha/beta hydrolase fold NQ562_06030 PF00356 Bacterial regulatory proteins, lacI family NQ562_06035 PF02436 Conserved carboxylase domain NQ562_06035 PF00364 Biotin-requiring enzyme NQ562_06035 PF00682 HMGL-like NQ562_06055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ562_06055 PF00512 His Kinase A (phospho-acceptor) domain NQ562_06060 PF00072 Response regulator receiver domain NQ562_06060 PF00486 Transcriptional regulatory protein, C terminal NQ562_06065 PF04607 Region found in RelA / SpoT proteins NQ562_06070 PF11146 Protein of unknown function (DUF2905) NQ562_06080 PF00571 CBS domain NQ562_06080 PF00478 IMP dehydrogenase / GMP reductase domain NQ562_06085 PF02844 Phosphoribosylglycinamide synthetase, N domain NQ562_06085 PF02843 Phosphoribosylglycinamide synthetase, C domain NQ562_06085 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NQ562_06090 PF01808 AICARFT/IMPCHase bienzyme NQ562_06090 PF02142 MGS-like domain NQ562_06095 PF00551 Formyl transferase NQ562_06100 PF00586 AIR synthase related protein, N-terminal domain NQ562_06100 PF02769 AIR synthase related protein, C-terminal domain NQ562_06105 PF00156 Phosphoribosyl transferase domain NQ562_06110 PF00731 AIR carboxylase NQ562_06115 PF01554 MatE NQ562_06120 PF00579 tRNA synthetases class I (W and Y) NQ562_06125 PF04480 Protein of unknown function (DUF559) NQ562_06130 PF00375 Sodium:dicarboxylate symporter family NQ562_06135 PF03591 AzlC protein NQ562_06140 PF05437 Branched-chain amino acid transport protein (AzlD) NQ562_06145 PF01895 PhoU domain NQ562_06150 PF00005 ABC transporter NQ562_06155 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_06160 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_06165 PF12849 PBP superfamily domain NQ562_06170 PF00465 Iron-containing alcohol dehydrogenase NQ562_06175 PF00248 Aldo/keto reductase family NQ562_06185 PF03466 LysR substrate binding domain NQ562_06185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_06190 PF00571 CBS domain NQ562_06190 PF00005 ABC transporter NQ562_06195 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_06205 PF01979 Amidohydrolase family NQ562_06215 PF03806 AbgT putative transporter family NQ562_06230 PF08534 Redoxin NQ562_06235 PF00118 TCP-1/cpn60 chaperonin family NQ562_06240 PF00166 Chaperonin 10 Kd subunit NQ562_06250 PF00398 Ribosomal RNA adenine dimethylase NQ562_06255 PF13331 Domain of unknown function (DUF4093) NQ562_06255 PF13662 Toprim domain NQ562_06260 PF01476 LysM domain NQ562_06260 PF06725 3D domain NQ562_06265 PF01026 TatD related DNase NQ562_06270 PF01588 Putative tRNA binding domain NQ562_06270 PF08264 Anticodon-binding domain of tRNA NQ562_06270 PF09334 tRNA synthetases class I (M) NQ562_06275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NQ562_06280 PF05175 Methyltransferase small domain NQ562_06285 PF04468 PSP1 C-terminal conserved region NQ562_06295 PF02223 Thymidylate kinase NQ562_06300 PF01276 Orn/Lys/Arg decarboxylase, major domain NQ562_06300 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NQ562_06310 PF00156 Phosphoribosyl transferase domain NQ562_06315 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NQ562_06320 PF01180 Dihydroorotate dehydrogenase NQ562_06325 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NQ562_06325 PF00175 Oxidoreductase NAD-binding domain NQ562_06330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NQ562_06330 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NQ562_06330 PF02142 MGS-like domain NQ562_06335 PF00117 Glutamine amidotransferase class-I NQ562_06335 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NQ562_06340 PF01979 Amidohydrolase family NQ562_06345 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NQ562_06345 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NQ562_06350 PF04480 Protein of unknown function (DUF559) NQ562_06355 PF04480 Protein of unknown function (DUF559) NQ562_06370 PF01527 Transposase NQ562_06375 PF13333 Integrase core domain NQ562_06375 PF00665 Integrase core domain NQ562_06375 PF13276 HTH-like domain NQ562_06380 PF00440 Bacterial regulatory proteins, tetR family NQ562_06380 PF17932 Tetracyclin repressor-like, C-terminal domain NQ562_06400 PF00535 Glycosyl transferase family 2 NQ562_06415 PF16363 GDP-mannose 4,6 dehydratase NQ562_06420 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NQ562_06425 PF00535 Glycosyl transferase family 2 NQ562_06430 PF04321 RmlD substrate binding domain NQ562_06440 PF16363 GDP-mannose 4,6 dehydratase NQ562_06445 PF00483 Nucleotidyl transferase NQ562_06455 PF00535 Glycosyl transferase family 2 NQ562_06475 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NQ562_06480 PF04991 LicD family NQ562_06485 PF01467 Cytidylyltransferase-like NQ562_06490 PF00155 Aminotransferase class I and II NQ562_06495 PF04991 LicD family NQ562_06510 PF03275 UDP-galactopyranose mutase NQ562_06515 PF00483 Nucleotidyl transferase NQ562_06525 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NQ562_06525 PF01588 Putative tRNA binding domain NQ562_06525 PF03147 Ferredoxin-fold anticodon binding domain NQ562_06525 PF03484 tRNA synthetase B5 domain NQ562_06525 PF03483 B3/4 domain NQ562_06530 PF01409 tRNA synthetases class II core domain (F) NQ562_06530 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NQ562_06575 PF09827 CRISPR associated protein Cas2 NQ562_06580 PF01867 CRISPR associated protein Cas1 NQ562_06585 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 NQ562_06585 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 NQ562_06585 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 NQ562_06585 PF13395 HNH endonuclease NQ562_06600 PF02311 AraC-like ligand binding domain NQ562_06600 PF12833 Helix-turn-helix domain NQ562_06610 PF01476 LysM domain NQ562_06610 PF00877 NlpC/P60 family NQ562_06610 PF08239 Bacterial SH3 domain NQ562_06615 PF00535 Glycosyl transferase family 2 NQ562_06620 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ562_06620 PF00085 Thioredoxin NQ562_06635 PF18073 Rubredoxin metal binding domain NQ562_06640 PF05848 CtsR N-terminal HTH domain NQ562_06640 PF17727 CtsR C-terminal dimerization domain NQ562_06645 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NQ562_06645 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NQ562_06655 PF02511 Thymidylate synthase complementing protein NQ562_06660 PF00636 Ribonuclease III domain NQ562_06665 PF09190 DALR domain NQ562_06665 PF01406 tRNA synthetases class I (C) catalytic domain NQ562_06670 PF00749 tRNA synthetases class I (E and Q), catalytic domain NQ562_06675 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NQ562_06675 PF02542 YgbB family NQ562_06685 PF02559 CarD-like/TRCF domain NQ562_06695 PF01966 HD domain NQ562_06695 PF01336 OB-fold nucleic acid binding domain NQ562_06700 PF01784 NIF3 (NGG1p interacting factor 3) NQ562_06715 PF02896 PEP-utilising enzyme, TIM barrel domain NQ562_06715 PF00391 PEP-utilising enzyme, mobile domain NQ562_06715 PF05524 PEP-utilising enzyme, N-terminal NQ562_06720 PF00381 PTS HPr component phosphorylation site NQ562_06725 PF00364 Biotin-requiring enzyme NQ562_06725 PF00682 HMGL-like NQ562_06725 PF02436 Conserved carboxylase domain NQ562_06730 PF01113 Dihydrodipicolinate reductase, N-terminus NQ562_06730 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain NQ562_06735 PF01435 Peptidase family M48 NQ562_06745 PF02899 Phage integrase, N-terminal SAM-like domain NQ562_06745 PF00589 Phage integrase family NQ562_06750 PF17209 Hfq protein NQ562_06765 PF08676 MutL C terminal dimerisation domain NQ562_06765 PF01119 DNA mismatch repair protein, C-terminal domain NQ562_06770 PF05190 MutS family domain IV NQ562_06770 PF01624 MutS domain I NQ562_06770 PF05188 MutS domain II NQ562_06770 PF05192 MutS domain III NQ562_06770 PF00488 MutS domain V NQ562_06775 PF04055 Radical SAM superfamily NQ562_06775 PF01938 TRAM domain NQ562_06775 PF00919 Uncharacterized protein family UPF0004 NQ562_06790 PF11798 IMS family HHH motif NQ562_06790 PF11799 impB/mucB/samB family C-terminal domain NQ562_06790 PF00817 impB/mucB/samB family NQ562_06800 PF01808 AICARFT/IMPCHase bienzyme NQ562_06800 PF02142 MGS-like domain NQ562_06805 PF00226 DnaJ domain NQ562_06805 PF01556 DnaJ C terminal domain NQ562_06805 PF00684 DnaJ central domain NQ562_06810 PF00012 Hsp70 protein NQ562_06815 PF01025 GrpE NQ562_06820 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding NQ562_06820 PF01628 HrcA protein C terminal domain NQ562_06825 PF06969 HemN C-terminal domain NQ562_06825 PF04055 Radical SAM superfamily NQ562_06840 PF05683 Fumarase C-terminus NQ562_06845 PF05681 Fumarate hydratase (Fumerase) NQ562_06850 PF02080 TrkA-C domain NQ562_06850 PF03600 Citrate transporter NQ562_06855 PF00392 Bacterial regulatory proteins, gntR family NQ562_06855 PF07729 FCD domain NQ562_06860 PF06421 GTP-binding protein LepA C-terminus NQ562_06860 PF03144 Elongation factor Tu domain 2 NQ562_06860 PF00679 Elongation factor G C-terminus NQ562_06860 PF00009 Elongation factor Tu GTP binding domain NQ562_06865 PF01649 Ribosomal protein S20 NQ562_06870 PF00488 MutS domain V NQ562_06870 PF01713 Smr domain NQ562_06875 PF01136 Peptidase family U32 NQ562_06875 PF16325 Peptidase family U32 C-terminal domain NQ562_06880 PF00905 Penicillin binding protein transpeptidase domain NQ562_06880 PF00912 Transglycosylase NQ562_06885 PF00293 NUDIX domain NQ562_06890 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NQ562_06890 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NQ562_06895 PF00579 tRNA synthetases class I (W and Y) NQ562_06900 PF01741 Large-conductance mechanosensitive channel, MscL NQ562_06905 PF02785 Biotin carboxylase C-terminal domain NQ562_06905 PF00289 Biotin carboxylase, N-terminal domain NQ562_06905 PF00364 Biotin-requiring enzyme NQ562_06905 PF00682 HMGL-like NQ562_06905 PF02436 Conserved carboxylase domain NQ562_06905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NQ562_06910 PF00453 Ribosomal protein L20 NQ562_06915 PF01632 Ribosomal protein L35 NQ562_06920 PF00707 Translation initiation factor IF-3, C-terminal domain NQ562_06920 PF05198 Translation initiation factor IF-3, N-terminal domain NQ562_06925 PF03129 Anticodon binding domain NQ562_06925 PF02824 TGS domain NQ562_06925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NQ562_06925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NQ562_06935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NQ562_06935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NQ562_06935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NQ562_06935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NQ562_06940 PF01502 Phosphoribosyl-AMP cyclohydrolase NQ562_06940 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NQ562_06945 PF00977 Histidine biosynthesis protein NQ562_06950 PF00977 Histidine biosynthesis protein NQ562_06955 PF00117 Glutamine amidotransferase class-I NQ562_06960 PF00475 Imidazoleglycerol-phosphate dehydratase NQ562_06965 PF00155 Aminotransferase class I and II NQ562_06970 PF00815 Histidinol dehydrogenase NQ562_06975 PF01634 ATP phosphoribosyltransferase NQ562_06980 PF13393 Histidyl-tRNA synthetase NQ562_06985 PF01371 Trp repressor protein NQ562_06990 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_06995 PF00005 ABC transporter NQ562_06995 PF09383 NIL domain NQ562_07005 PF00245 Alkaline phosphatase NQ562_07015 PF00005 ABC transporter NQ562_07025 PF03577 Peptidase family C69 NQ562_07030 PF00375 Sodium:dicarboxylate symporter family NQ562_07035 PF03616 Sodium/glutamate symporter NQ562_07040 PF01588 Putative tRNA binding domain NQ562_07040 PF09334 tRNA synthetases class I (M) NQ562_07040 PF08264 Anticodon-binding domain of tRNA NQ562_07050 PF01272 Transcription elongation factor, GreA/GreB, C-term NQ562_07050 PF03449 Transcription elongation factor, N-terminal NQ562_07090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NQ562_07090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NQ562_07095 PF02127 Aminopeptidase I zinc metalloprotease (M18) NQ562_07100 PF13520 Amino acid permease NQ562_07105 PF07687 Peptidase dimerisation domain NQ562_07105 PF01546 Peptidase family M20/M25/M40 NQ562_07110 PF03180 NLPA lipoprotein NQ562_07130 PF00881 Nitroreductase family NQ562_07140 PF00395 S-layer homology domain NQ562_07155 PF14748 Pyrroline-5-carboxylate reductase dimerisation NQ562_07155 PF03807 NADP oxidoreductase coenzyme F420-dependent NQ562_07160 PF04472 Cell division protein SepF NQ562_07165 PF01168 Alanine racemase, N-terminal domain NQ562_07170 PF02578 Multi-copper polyphenol oxidoreductase laccase NQ562_07175 PF03976 Polyphosphate kinase 2 (PPK2) NQ562_07185 PF11283 Protein of unknown function (DUF3084) NQ562_07190 PF02229 Transcriptional Coactivator p15 (PC4) NQ562_07200 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NQ562_07210 PF01370 NAD dependent epimerase/dehydratase family NQ562_07215 PF01467 Cytidylyltransferase-like NQ562_07215 PF00294 pfkB family carbohydrate kinase NQ562_07220 PF13580 SIS domain NQ562_07245 PF02583 Metal-sensitive transcriptional repressor NQ562_07250 PF06827 Zinc finger found in FPG and IleRS NQ562_07250 PF00133 tRNA synthetases class I (I, L, M and V) NQ562_07250 PF08264 Anticodon-binding domain of tRNA NQ562_07255 PF08032 RNA 2'-O ribose methyltransferase substrate binding NQ562_07255 PF00588 SpoU rRNA Methylase family NQ562_07260 PF02254 TrkA-N domain NQ562_07260 PF02080 TrkA-C domain NQ562_07265 PF02386 Cation transport protein NQ562_07270 PF01070 FMN-dependent dehydrogenase NQ562_07275 PF01638 HxlR-like helix-turn-helix NQ562_07280 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NQ562_07285 PF00457 Glycosyl hydrolases family 11 NQ562_07285 PF01522 Polysaccharide deacetylase NQ562_07285 PF03422 Carbohydrate binding module (family 6) NQ562_07300 PF00535 Glycosyl transferase family 2 NQ562_07305 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain NQ562_07305 PF01522 Polysaccharide deacetylase NQ562_07310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NQ562_07310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NQ562_07310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NQ562_07320 PF00360 Phytochrome region NQ562_07320 PF00990 Diguanylate cyclase, GGDEF domain NQ562_07320 PF01590 GAF domain NQ562_07320 PF00563 EAL domain NQ562_07325 PF00990 Diguanylate cyclase, GGDEF domain NQ562_07325 PF17151 Periplasmic sensor domain NQ562_07330 PF04055 Radical SAM superfamily NQ562_07350 PF07715 TonB-dependent Receptor Plug Domain NQ562_07350 PF00593 TonB dependent receptor NQ562_07375 PF01618 MotA/TolQ/ExbB proton channel family NQ562_07380 PF00664 ABC transporter transmembrane region NQ562_07380 PF00005 ABC transporter NQ562_07385 PF00005 ABC transporter NQ562_07390 PF01032 FecCD transport family NQ562_07395 PF01497 Periplasmic binding protein NQ562_07400 PF07715 TonB-dependent Receptor Plug Domain NQ562_07400 PF00593 TonB dependent receptor NQ562_07425 PF01207 Dihydrouridine synthase (Dus) NQ562_07430 PF03309 Type III pantothenate kinase NQ562_07435 PF02237 Biotin protein ligase C terminal domain NQ562_07435 PF03099 Biotin/lipoate A/B protein ligase family NQ562_07435 PF08279 HTH domain NQ562_07440 PF00004 ATPase family associated with various cellular activities (AAA) NQ562_07440 PF17862 AAA+ lid domain NQ562_07440 PF06480 FtsH Extracellular NQ562_07440 PF01434 Peptidase family M41 NQ562_07445 PF01171 PP-loop family NQ562_07445 PF00156 Phosphoribosyl transferase domain NQ562_07445 PF11734 TilS substrate C-terminal domain NQ562_07450 PF09179 TilS substrate binding domain NQ562_07450 PF01171 PP-loop family NQ562_07450 PF11734 TilS substrate C-terminal domain NQ562_07455 PF00575 S1 RNA binding domain NQ562_07465 PF00216 Bacterial DNA-binding protein NQ562_07470 PF03819 MazG nucleotide pyrophosphohydrolase domain NQ562_07475 PF01943 Polysaccharide biosynthesis protein NQ562_07475 PF14667 Polysaccharide biosynthesis C-terminal domain NQ562_07480 PF03461 TRCF domain NQ562_07480 PF02559 CarD-like/TRCF domain NQ562_07480 PF00270 DEAD/DEAH box helicase NQ562_07480 PF00271 Helicase conserved C-terminal domain NQ562_07480 PF17757 UvrB interaction domain NQ562_07485 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NQ562_07490 PF06418 CTP synthase N-terminus NQ562_07490 PF00117 Glutamine amidotransferase class-I NQ562_07495 PF00750 tRNA synthetases class I (R) NQ562_07495 PF05746 DALR anticodon binding domain NQ562_07495 PF03485 Arginyl tRNA synthetase N terminal domain NQ562_07505 PF00474 Sodium:solute symporter family NQ562_07520 PF03853 YjeF-related protein N-terminus NQ562_07520 PF01256 Carbohydrate kinase NQ562_07525 PF01648 4'-phosphopantetheinyl transferase superfamily NQ562_07530 PF00004 ATPase family associated with various cellular activities (AAA) NQ562_07530 PF16193 AAA C-terminal domain NQ562_07530 PF12002 MgsA AAA+ ATPase C terminal NQ562_07540 PF00654 Voltage gated chloride channel NQ562_07545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NQ562_07545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NQ562_07550 PF09383 NIL domain NQ562_07550 PF00005 ABC transporter NQ562_07555 PF02653 Branched-chain amino acid transport system / permease component NQ562_07570 PF01435 Peptidase family M48 NQ562_07580 PF12320 Type 5 capsule protein repressor C-terminal domain NQ562_07580 PF00149 Calcineurin-like phosphoesterase NQ562_07585 PF13476 AAA domain NQ562_07590 PF01965 DJ-1/PfpI family NQ562_07600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ562_07600 PF00672 HAMP domain NQ562_07600 PF00512 His Kinase A (phospho-acceptor) domain NQ562_07605 PF00486 Transcriptional regulatory protein, C terminal NQ562_07605 PF00072 Response regulator receiver domain NQ562_07615 PF00689 Cation transporting ATPase, C-terminus NQ562_07615 PF00690 Cation transporter/ATPase, N-terminus NQ562_07620 PF00571 CBS domain NQ562_07620 PF01769 Divalent cation transporter NQ562_07620 PF03448 MgtE intracellular N domain NQ562_07630 PF17785 PUA-like domain NQ562_07630 PF10672 S-adenosylmethionine-dependent methyltransferase NQ562_07635 PF01554 MatE NQ562_07645 PF00793 DAHP synthetase I family NQ562_07650 PF03180 NLPA lipoprotein NQ562_07655 PF00390 Malic enzyme, N-terminal domain NQ562_07655 PF03949 Malic enzyme, NAD binding domain NQ562_07665 PF01725 Ham1 family NQ562_07680 PF03061 Thioesterase superfamily NQ562_07690 PF09515 Thiamine transporter protein (Thia_YuaJ) NQ562_07695 PF01261 Xylose isomerase-like TIM barrel NQ562_07700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ562_07700 PF00512 His Kinase A (phospho-acceptor) domain NQ562_07700 PF00072 Response regulator receiver domain NQ562_07700 PF01627 Hpt domain NQ562_07705 PF17820 PDZ domain NQ562_07705 PF03572 Peptidase family S41 NQ562_07705 PF01471 Putative peptidoglycan binding domain NQ562_07710 PF01551 Peptidase family M23 NQ562_07715 PF02687 FtsX-like permease family NQ562_07715 PF18075 FtsX extracellular domain NQ562_07720 PF00005 ABC transporter NQ562_07735 PF03462 PCRF domain NQ562_07735 PF00472 RF-1 domain NQ562_07740 PF02810 SEC-C motif NQ562_07740 PF07516 SecA Wing and Scaffold domain NQ562_07740 PF01043 SecA preprotein cross-linking domain NQ562_07740 PF07517 SecA DEAD-like domain NQ562_07745 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NQ562_07745 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NQ562_07750 PF00005 ABC transporter NQ562_07755 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_07760 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ562_07765 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ562_07770 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ562_07775 PF11849 Domain of unknown function (DUF3369) NQ562_07785 PF03352 Methyladenine glycosylase NQ562_07785 PF13302 Acetyltransferase (GNAT) domain NQ562_07785 PF13673 Acetyltransferase (GNAT) domain NQ562_07785 PF00958 GMP synthase C terminal domain NQ562_07785 PF00117 Glutamine amidotransferase class-I NQ562_07795 PF05658 Head domain of trimeric autotransporter adhesin NQ562_07795 PF03895 YadA-like membrane anchor domain NQ562_07795 PF05662 Coiled stalk of trimeric autotransporter adhesin NQ562_07805 PF03471 Transporter associated domain NQ562_07805 PF00999 Sodium/hydrogen exchanger family NQ562_07805 PF02080 TrkA-C domain NQ562_07815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_07815 PF03466 LysR substrate binding domain NQ562_07820 PF03601 Conserved hypothetical protein 698 NQ562_07830 PF03466 LysR substrate binding domain NQ562_07830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_07840 PF00106 short chain dehydrogenase NQ562_07845 PF00106 short chain dehydrogenase NQ562_07850 PF12146 Serine aminopeptidase, S33 NQ562_07855 PF00135 Carboxylesterase family NQ562_07860 PF00465 Iron-containing alcohol dehydrogenase NQ562_07905 PF03737 Aldolase/RraA NQ562_07910 PF02829 3H domain NQ562_07910 PF08279 HTH domain NQ562_07930 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ562_07945 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NQ562_07945 PF00132 Bacterial transferase hexapeptide (six repeats) NQ562_07950 PF07977 FabA-like domain NQ562_07955 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NQ562_07960 PF03279 Bacterial lipid A biosynthesis acyltransferase NQ562_07970 PF00132 Bacterial transferase hexapeptide (six repeats) NQ562_07970 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NQ562_07990 PF01103 Surface antigen NQ562_07990 PF07244 Surface antigen variable number repeat NQ562_08010 PF00005 ABC transporter NQ562_08015 PF02405 Permease MlaE NQ562_08040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NQ562_08055 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NQ562_08060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ562_08060 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ562_08065 PF00231 ATP synthase NQ562_08070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NQ562_08070 PF02874 ATP synthase alpha/beta family, beta-barrel domain NQ562_08070 PF00306 ATP synthase alpha/beta chain, C terminal domain NQ562_08075 PF00430 ATP synthase B/B' CF(0) NQ562_08075 PF00213 ATP synthase delta (OSCP) subunit NQ562_08080 PF00137 ATP synthase subunit C NQ562_08085 PF00119 ATP synthase A chain NQ562_08095 PF02350 UDP-N-acetylglucosamine 2-epimerase NQ562_08100 PF00953 Glycosyl transferase family 4 NQ562_08120 PF01554 MatE NQ562_08125 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NQ562_08125 PF01676 Metalloenzyme superfamily NQ562_08130 PF00781 Diacylglycerol kinase catalytic domain NQ562_08145 PF02132 RecR protein NQ562_08145 PF13662 Toprim domain NQ562_08150 PF02575 YbaB/EbfC DNA-binding family NQ562_08155 PF12169 DNA polymerase III subunits gamma and tau domain III NQ562_08170 PF02913 FAD linked oxidases, C-terminal domain NQ562_08170 PF01565 FAD binding domain NQ562_08175 PF01168 Alanine racemase, N-terminal domain NQ562_08175 PF00842 Alanine racemase, C-terminal domain NQ562_08180 PF04204 Homoserine O-succinyltransferase NQ562_08185 PF14437 MafB19-like deaminase NQ562_08195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_08195 PF03466 LysR substrate binding domain NQ562_08200 PF02417 Chromate transporter NQ562_08235 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NQ562_08240 PF01938 TRAM domain NQ562_08240 PF05958 tRNA (Uracil-5-)-methyltransferase NQ562_08250 PF01047 MarR family NQ562_08250 PF00583 Acetyltransferase (GNAT) family NQ562_08260 PF00583 Acetyltransferase (GNAT) family NQ562_08300 PF13276 HTH-like domain NQ562_08300 PF13333 Integrase core domain NQ562_08300 PF00665 Integrase core domain NQ562_08315 PF02796 Helix-turn-helix domain of resolvase NQ562_08315 PF00239 Resolvase, N terminal domain NQ562_08340 PF01520 N-acetylmuramoyl-L-alanine amidase NQ562_08340 PF08239 Bacterial SH3 domain NQ562_08375 PF07484 Phage Tail Collar Domain NQ562_08375 PF03335 Phage tail fibre repeat NQ562_08375 PF08400 Prophage tail fibre N-terminal NQ562_08385 PF04865 Baseplate J-like protein NQ562_08465 PF00574 Clp protease NQ562_08475 PF01348 Type II intron maturase NQ562_08475 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NQ562_08480 PF04860 Phage portal protein NQ562_08520 PF01555 DNA methylase NQ562_08580 PF03374 Phage antirepressor protein KilAC domain NQ562_08580 PF09669 Phage regulatory protein Rha (Phage_pRha) NQ562_08640 PF00970 Oxidoreductase FAD-binding domain NQ562_08640 PF00111 2Fe-2S iron-sulfur cluster binding domain NQ562_08640 PF00175 Oxidoreductase NAD-binding domain NQ562_08645 PF13538 UvrD-like helicase C-terminal domain NQ562_08645 PF14490 Helix-hairpin-helix containing domain NQ562_08645 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NQ562_08650 PF01638 HxlR-like helix-turn-helix NQ562_08655 PF13460 NAD(P)H-binding NQ562_08665 PF13419 Haloacid dehalogenase-like hydrolase NQ562_08690 PF00465 Iron-containing alcohol dehydrogenase NQ562_08695 PF13426 PAS domain NQ562_08695 PF00158 Sigma-54 interaction domain NQ562_08695 PF02954 Bacterial regulatory protein, Fis family NQ562_08705 PF12833 Helix-turn-helix domain NQ562_08710 PF02028 BCCT, betaine/carnitine/choline family transporter NQ562_08715 PF04055 Radical SAM superfamily NQ562_08720 PF01228 Glycine radical NQ562_08720 PF02901 Pyruvate formate lyase-like NQ562_08740 PF01235 Sodium:alanine symporter family NQ562_08745 PF02558 Ketopantoate reductase PanE/ApbA NQ562_08745 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain NQ562_08750 PF10371 Domain of unknown function NQ562_08750 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NQ562_08750 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NQ562_08750 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NQ562_08750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ562_08755 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal NQ562_08755 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal NQ562_08760 PF00175 Oxidoreductase NAD-binding domain NQ562_08760 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NQ562_08765 PF13247 4Fe-4S dicluster domain NQ562_08765 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NQ562_08765 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ562_08780 PF00309 Sigma-54 factor, Activator interacting domain (AID) NQ562_08780 PF04963 Sigma-54 factor, core binding domain NQ562_08780 PF04552 Sigma-54, DNA binding domain NQ562_08785 PF16736 Single Cache-like NQ562_08785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ562_08785 PF00512 His Kinase A (phospho-acceptor) domain NQ562_08785 PF00989 PAS fold NQ562_08790 PF00072 Response regulator receiver domain NQ562_08790 PF00486 Transcriptional regulatory protein, C terminal NQ562_08795 PF01515 Phosphate acetyl/butaryl transferase NQ562_08815 PF03313 Serine dehydratase alpha chain NQ562_08825 PF00375 Sodium:dicarboxylate symporter family NQ562_08830 PF00155 Aminotransferase class I and II NQ562_08835 PF01042 Endoribonuclease L-PSP NQ562_08875 PF02664 S-Ribosylhomocysteinase (LuxS) NQ562_08905 PF00271 Helicase conserved C-terminal domain NQ562_08905 PF04851 Type III restriction enzyme, res subunit NQ562_08910 PF00268 Ribonucleotide reductase, small chain NQ562_08915 PF03477 ATP cone domain NQ562_08915 PF00317 Ribonucleotide reductase, all-alpha domain NQ562_08915 PF02867 Ribonucleotide reductase, barrel domain NQ562_08920 PF00704 Glycosyl hydrolases family 18 NQ562_08925 PF02833 DHHA2 domain NQ562_08925 PF01368 DHH family NQ562_08940 PF02457 DisA bacterial checkpoint controller nucleotide-binding NQ562_08945 PF01546 Peptidase family M20/M25/M40 NQ562_08945 PF07687 Peptidase dimerisation domain NQ562_08955 PF14698 Argininosuccinate lyase C-terminal NQ562_08955 PF00206 Lyase NQ562_08960 PF00764 Arginosuccinate synthase NQ562_08965 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NQ562_08965 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NQ562_08970 PF00202 Aminotransferase class-III NQ562_08975 PF00696 Amino acid kinase family NQ562_08980 PF00912 Transglycosylase NQ562_08980 PF00905 Penicillin binding protein transpeptidase domain NQ562_08985 PF00342 Phosphoglucose isomerase NQ562_08995 PF13333 Integrase core domain NQ562_08995 PF13276 HTH-like domain NQ562_08995 PF00665 Integrase core domain NQ562_09000 PF01527 Transposase NQ562_09010 PF01546 Peptidase family M20/M25/M40 NQ562_09010 PF07687 Peptidase dimerisation domain NQ562_09015 PF00180 Isocitrate/isopropylmalate dehydrogenase NQ562_09030 PF14718 Soluble lytic murein transglycosylase L domain NQ562_09030 PF01464 Transglycosylase SLT domain NQ562_09035 PF01121 Dephospho-CoA kinase NQ562_09040 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NQ562_09040 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NQ562_09040 PF06827 Zinc finger found in FPG and IleRS NQ562_09045 PF01367 5'-3' exonuclease, C-terminal SAM fold NQ562_09045 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NQ562_09045 PF00476 DNA polymerase family A NQ562_09050 PF00155 Aminotransferase class I and II NQ562_09060 PF01235 Sodium:alanine symporter family NQ562_09065 PF03553 Na+/H+ antiporter family NQ562_09070 PF01758 Sodium Bile acid symporter family NQ562_09075 PF01022 Bacterial regulatory protein, arsR family NQ562_09095 PF00899 ThiF family NQ562_09100 PF05690 Thiazole biosynthesis protein ThiG NQ562_09105 PF06968 Biotin and Thiamin Synthesis associated domain NQ562_09105 PF04055 Radical SAM superfamily NQ562_09110 PF02581 Thiamine monophosphate synthase NQ562_09120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_09120 PF03466 LysR substrate binding domain NQ562_09135 PF01970 Tripartite tricarboxylate transporter TctA family NQ562_09150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_09150 PF03466 LysR substrate binding domain NQ562_09155 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NQ562_09160 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NQ562_09160 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NQ562_09165 PF01979 Amidohydrolase family NQ562_09170 PF03466 LysR substrate binding domain NQ562_09170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_09185 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ562_09185 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NQ562_09190 PF01266 FAD dependent oxidoreductase NQ562_09190 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NQ562_09195 PF03600 Citrate transporter NQ562_09195 PF02080 TrkA-C domain NQ562_09210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NQ562_09220 PF00497 Bacterial extracellular solute-binding proteins, family 3 NQ562_09230 PF07715 TonB-dependent Receptor Plug Domain NQ562_09230 PF00593 TonB dependent receptor NQ562_09270 PF03806 AbgT putative transporter family NQ562_09275 PF03806 AbgT putative transporter family NQ562_09280 PF03806 AbgT putative transporter family NQ562_09290 PF00623 RNA polymerase Rpb1, domain 2 NQ562_09290 PF04997 RNA polymerase Rpb1, domain 1 NQ562_09290 PF05000 RNA polymerase Rpb1, domain 4 NQ562_09290 PF04998 RNA polymerase Rpb1, domain 5 NQ562_09290 PF04983 RNA polymerase Rpb1, domain 3 NQ562_09295 PF04565 RNA polymerase Rpb2, domain 3 NQ562_09295 PF10385 RNA polymerase beta subunit external 1 domain NQ562_09295 PF04563 RNA polymerase beta subunit NQ562_09295 PF04560 RNA polymerase Rpb2, domain 7 NQ562_09295 PF04561 RNA polymerase Rpb2, domain 2 NQ562_09295 PF00562 RNA polymerase Rpb2, domain 6 NQ562_09310 PF01016 Ribosomal L27 protein NQ562_09320 PF00829 Ribosomal prokaryotic L21 protein NQ562_09325 PF00892 EamA-like transporter family NQ562_09330 PF02637 GatB domain NQ562_09330 PF02934 GatB/GatE catalytic domain NQ562_09335 PF01425 Amidase NQ562_09340 PF02686 Glu-tRNAGln amidotransferase C subunit NQ562_09345 PF01053 Cys/Met metabolism PLP-dependent enzyme NQ562_09355 PF05746 DALR anticodon binding domain NQ562_09355 PF02092 Glycyl-tRNA synthetase beta subunit NQ562_09360 PF02091 Glycyl-tRNA synthetase alpha subunit NQ562_09365 PF13520 Amino acid permease NQ562_09370 PF00535 Glycosyl transferase family 2 NQ562_09385 PF03606 C4-dicarboxylate anaerobic carrier NQ562_09390 PF07687 Peptidase dimerisation domain NQ562_09390 PF01546 Peptidase family M20/M25/M40 NQ562_09410 PF01807 CHC2 zinc finger NQ562_09410 PF08275 DNA primase catalytic core, N-terminal domain NQ562_09410 PF10410 DnaB-helicase binding domain of primase NQ562_09420 PF03618 Kinase/pyrophosphorylase NQ562_09425 PF00571 CBS domain NQ562_09425 PF08279 HTH domain NQ562_09430 PF00391 PEP-utilising enzyme, mobile domain NQ562_09430 PF02896 PEP-utilising enzyme, TIM barrel domain NQ562_09430 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NQ562_09435 PF07670 Nucleoside recognition NQ562_09440 PF01613 Flavin reductase like domain NQ562_09450 PF01032 FecCD transport family NQ562_09460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NQ562_09460 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ562_09485 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NQ562_09490 PF03390 2-hydroxycarboxylate transporter family NQ562_09500 PF03169 OPT oligopeptide transporter protein NQ562_09505 PF00290 Tryptophan synthase alpha chain NQ562_09510 PF00291 Pyridoxal-phosphate dependent enzyme NQ562_09515 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NQ562_09520 PF00218 Indole-3-glycerol phosphate synthase NQ562_09525 PF02885 Glycosyl transferase family, helical bundle domain NQ562_09525 PF00591 Glycosyl transferase family, a/b domain NQ562_09530 PF00117 Glutamine amidotransferase class-I NQ562_09535 PF00425 chorismate binding enzyme NQ562_09535 PF04715 Anthranilate synthase component I, N terminal region NQ562_09545 PF07687 Peptidase dimerisation domain NQ562_09545 PF01546 Peptidase family M20/M25/M40 NQ562_09550 PF03180 NLPA lipoprotein NQ562_09555 PF00528 Binding-protein-dependent transport system inner membrane component NQ562_09560 PF00005 ABC transporter NQ562_09560 PF09383 NIL domain NQ562_09565 PF00258 Flavodoxin NQ562_09575 PF00375 Sodium:dicarboxylate symporter family NQ562_09580 PF06826 Predicted Permease Membrane Region NQ562_09580 PF02080 TrkA-C domain NQ562_09590 PF01527 Transposase NQ562_09595 PF13276 HTH-like domain NQ562_09595 PF00665 Integrase core domain NQ562_09595 PF13333 Integrase core domain NQ562_09600 PF07687 Peptidase dimerisation domain NQ562_09600 PF01546 Peptidase family M20/M25/M40 NQ562_09605 PF03313 Serine dehydratase alpha chain NQ562_09620 PF00542 Ribosomal protein L7/L12 C-terminal domain NQ562_09620 PF16320 Ribosomal protein L7/L12 dimerisation domain NQ562_09625 PF00466 Ribosomal protein L10 NQ562_09630 PF00687 Ribosomal protein L1p/L10e family NQ562_09635 PF03946 Ribosomal protein L11, N-terminal domain NQ562_09635 PF00298 Ribosomal protein L11, RNA binding domain NQ562_09640 PF02357 Transcription termination factor nusG NQ562_09640 PF00467 KOW motif NQ562_09650 PF00471 Ribosomal protein L33 NQ562_09655 PF03144 Elongation factor Tu domain 2 NQ562_09655 PF03143 Elongation factor Tu C-terminal domain NQ562_09655 PF00009 Elongation factor Tu GTP binding domain NQ562_09685 PF02673 Bacitracin resistance protein BacA NQ562_09690 PF00365 Phosphofructokinase NQ562_09700 PF08281 Sigma-70, region 4 NQ562_09700 PF04542 Sigma-70 region 2 NQ562_09705 PF08032 RNA 2'-O ribose methyltransferase substrate binding NQ562_09705 PF00588 SpoU rRNA Methylase family NQ562_09710 PF00258 Flavodoxin NQ562_09710 PF00753 Metallo-beta-lactamase superfamily NQ562_09715 PF01235 Sodium:alanine symporter family NQ562_09720 PF06472 ABC transporter transmembrane region 2 NQ562_09720 PF00005 ABC transporter NQ562_09725 PF00873 AcrB/AcrD/AcrF family NQ562_09730 PF00529 HlyD membrane-fusion protein of T1SS NQ562_09730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NQ562_09740 PF02913 FAD linked oxidases, C-terminal domain NQ562_09740 PF01565 FAD binding domain NQ562_09745 PF01717 Cobalamin-independent synthase, Catalytic domain NQ562_09750 PF06968 Biotin and Thiamin Synthesis associated domain NQ562_09750 PF04055 Radical SAM superfamily NQ562_09755 PF13520 Amino acid permease NQ562_09760 PF07722 Peptidase C26 NQ562_09765 PF02310 B12 binding domain NQ562_09765 PF02574 Homocysteine S-methyltransferase NQ562_09765 PF00809 Pterin binding enzyme NQ562_09765 PF02965 Vitamin B12 dependent methionine synthase, activation domain NQ562_09765 PF02607 B12 binding domain NQ562_09775 PF02219 Methylenetetrahydrofolate reductase NQ562_09785 PF00857 Isochorismatase family NQ562_09790 PF01546 Peptidase family M20/M25/M40 NQ562_09790 PF07687 Peptidase dimerisation domain NQ562_09795 PF00156 Phosphoribosyl transferase domain NQ562_09805 PF02503 Polyphosphate kinase middle domain NQ562_09805 PF17941 Polyphosphate kinase C-terminal domain 1 NQ562_09805 PF13089 Polyphosphate kinase N-terminal domain NQ562_09805 PF13090 Polyphosphate kinase C-terminal domain 2 NQ562_09815 PF02541 Ppx/GppA phosphatase family NQ562_09820 PF03466 LysR substrate binding domain NQ562_09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_09825 PF04172 LrgB-like family NQ562_09835 PF03606 C4-dicarboxylate anaerobic carrier NQ562_09840 PF01546 Peptidase family M20/M25/M40 NQ562_09855 PF02082 Transcriptional regulator NQ562_09865 PF00920 Dehydratase family NQ562_09870 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ562_09870 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NQ562_09870 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NQ562_09875 PF00037 4Fe-4S binding domain NQ562_09875 PF02256 Iron hydrogenase small subunit NQ562_09875 PF02906 Iron only hydrogenase large subunit, C-terminal domain NQ562_09875 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NQ562_09880 PF01470 Pyroglutamyl peptidase NQ562_09910 PF04463 Protein of unknown function (DUF523) NQ562_09915 PF01554 MatE NQ562_09930 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NQ562_09965 PF01546 Peptidase family M20/M25/M40 NQ562_09970 PF03606 C4-dicarboxylate anaerobic carrier NQ562_09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_09980 PF03466 LysR substrate binding domain NQ562_09985 PF00356 Bacterial regulatory proteins, lacI family NQ562_09990 PF00701 Dihydrodipicolinate synthetase family NQ562_10000 PF00395 S-layer homology domain NQ562_10005 PF10371 Domain of unknown function NQ562_10005 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II NQ562_10005 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase NQ562_10005 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg NQ562_10005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NQ562_10010 PF02811 PHP domain NQ562_10010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NQ562_10010 PF14579 Helix-hairpin-helix motif NQ562_10010 PF07733 Bacterial DNA polymerase III alpha NTPase domain NQ562_10010 PF00929 Exonuclease NQ562_10020 PF13509 S1 domain NQ562_10020 PF17783 CvfB-like winged helix domain NQ562_10030 PF03816 Cell envelope-related transcriptional attenuator domain NQ562_10035 PF01966 HD domain NQ562_10045 PF01467 Cytidylyltransferase-like NQ562_10055 PF01926 50S ribosome-binding GTPase NQ562_10055 PF06071 Protein of unknown function (DUF933) NQ562_10060 PF00571 CBS domain NQ562_10060 PF03448 MgtE intracellular N domain NQ562_10060 PF01769 Divalent cation transporter NQ562_10070 PF00367 phosphotransferase system, EIIB NQ562_10070 PF02378 Phosphotransferase system, EIIC NQ562_10075 PF13580 SIS domain NQ562_10080 PF01979 Amidohydrolase family NQ562_10095 PF01196 Ribosomal protein L17 NQ562_10100 PF01000 RNA polymerase Rpb3/RpoA insert domain NQ562_10100 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NQ562_10100 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NQ562_10105 PF01479 S4 domain NQ562_10105 PF00163 Ribosomal protein S4/S9 N-terminal domain NQ562_10110 PF00411 Ribosomal protein S11 NQ562_10115 PF00416 Ribosomal protein S13/S18 NQ562_10120 PF00444 Ribosomal protein L36 NQ562_10125 PF01176 Translation initiation factor 1A / IF-1 NQ562_10130 PF05191 Adenylate kinase, active site lid NQ562_10135 PF00344 SecY translocase NQ562_10140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NQ562_10145 PF00327 Ribosomal protein L30p/L7e NQ562_10150 PF00333 Ribosomal protein S5, N-terminal domain NQ562_10150 PF03719 Ribosomal protein S5, C-terminal domain NQ562_10155 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NQ562_10160 PF00347 Ribosomal protein L6 NQ562_10165 PF00410 Ribosomal protein S8 NQ562_10170 PF00253 Ribosomal protein S14p/S29e NQ562_10175 PF00673 ribosomal L5P family C-terminus NQ562_10175 PF00281 Ribosomal protein L5 NQ562_10180 PF00467 KOW motif NQ562_10180 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NQ562_10185 PF00238 Ribosomal protein L14p/L23e NQ562_10190 PF00366 Ribosomal protein S17 NQ562_10195 PF00831 Ribosomal L29 protein NQ562_10200 PF00252 Ribosomal protein L16p/L10e NQ562_10205 PF07650 KH domain NQ562_10205 PF00189 Ribosomal protein S3, C-terminal domain NQ562_10210 PF00237 Ribosomal protein L22p/L17e NQ562_10215 PF00203 Ribosomal protein S19 NQ562_10220 PF03947 Ribosomal Proteins L2, C-terminal domain NQ562_10220 PF00181 Ribosomal Proteins L2, RNA binding domain NQ562_10225 PF00276 Ribosomal protein L23 NQ562_10230 PF00573 Ribosomal protein L4/L1 family NQ562_10235 PF00297 Ribosomal protein L3 NQ562_10240 PF00338 Ribosomal protein S10p/S20e NQ562_10245 PF03144 Elongation factor Tu domain 2 NQ562_10245 PF03143 Elongation factor Tu C-terminal domain NQ562_10245 PF00009 Elongation factor Tu GTP binding domain NQ562_10250 PF00679 Elongation factor G C-terminus NQ562_10250 PF14492 Elongation Factor G, domain II NQ562_10250 PF03764 Elongation factor G, domain IV NQ562_10250 PF00009 Elongation factor Tu GTP binding domain NQ562_10250 PF03144 Elongation factor Tu domain 2 NQ562_10255 PF00177 Ribosomal protein S7p/S5e NQ562_10260 PF00164 Ribosomal protein S12/S23 NQ562_10265 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NQ562_10290 PF16326 ABC transporter C-terminal domain NQ562_10290 PF12848 ABC transporter NQ562_10290 PF00005 ABC transporter NQ562_10295 PF16363 GDP-mannose 4,6 dehydratase NQ562_10300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NQ562_10300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NQ562_10300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NQ562_10300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NQ562_10315 PF00004 ATPase family associated with various cellular activities (AAA) NQ562_10315 PF07724 AAA domain (Cdc48 subfamily) NQ562_10315 PF17871 AAA lid domain NQ562_10315 PF02861 Clp amino terminal domain, pathogenicity island component NQ562_10315 PF10431 C-terminal, D2-small domain, of ClpB protein NQ562_10345 PF00465 Iron-containing alcohol dehydrogenase NQ562_10350 PF00171 Aldehyde dehydrogenase family NQ562_10355 PF01022 Bacterial regulatory protein, arsR family NQ562_10365 PF05525 Branched-chain amino acid transport protein NQ562_10375 PF00313 'Cold-shock' DNA-binding domain NQ562_10380 PF01541 GIY-YIG catalytic domain NQ562_10385 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NQ562_10395 PF07992 Pyridine nucleotide-disulphide oxidoreductase NQ562_10400 PF10145 Phage-related minor tail protein NQ562_10400 PF01464 Transglycosylase SLT domain NQ562_10400 PF01551 Peptidase family M23 NQ562_10405 PF03466 LysR substrate binding domain NQ562_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_10425 PF07859 alpha/beta hydrolase fold NQ562_10430 PF01943 Polysaccharide biosynthesis protein NQ562_10430 PF14667 Polysaccharide biosynthesis C-terminal domain NQ562_10435 PF01869 BadF/BadG/BcrA/BcrD ATPase family NQ562_10440 PF00011 Hsp20/alpha crystallin family NQ562_10450 PF01053 Cys/Met metabolism PLP-dependent enzyme NQ562_10460 PF13673 Acetyltransferase (GNAT) domain NQ562_10460 PF13302 Acetyltransferase (GNAT) domain NQ562_10460 PF03352 Methyladenine glycosylase NQ562_10460 PF00117 Glutamine amidotransferase class-I NQ562_10460 PF00958 GMP synthase C terminal domain NQ562_10470 PF04960 Glutaminase NQ562_10475 PF01235 Sodium:alanine symporter family NQ562_10480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NQ562_10480 PF03466 LysR substrate binding domain NQ562_10485 PF01842 ACT domain NQ562_10485 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NQ562_10485 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NQ562_10490 PF02646 RmuC family NQ562_10505 PF13533 Biotin-lipoyl like NQ562_10510 PF00873 AcrB/AcrD/AcrF family NQ562_10515 PF13333 Integrase core domain NQ562_10515 PF13276 HTH-like domain NQ562_10515 PF00665 Integrase core domain NQ562_10520 PF01527 Transposase NQ562_10525 PF01554 MatE NQ562_10535 PF10415 Fumarase C C-terminus NQ562_10535 PF00206 Lyase NQ562_10545 PF08502 LeuA allosteric (dimerisation) domain NQ562_10545 PF00682 HMGL-like NQ562_10550 PF00330 Aconitase family (aconitate hydratase) NQ562_10555 PF00694 Aconitase C-terminal domain NQ562_10560 PF00180 Isocitrate/isopropylmalate dehydrogenase NQ562_10575 PF00709 Adenylosuccinate synthetase NQ562_10580 PF00206 Lyase NQ562_10580 PF10397 Adenylosuccinate lyase C-terminus NQ562_10585 PF00772 DnaB-like helicase N terminal domain NQ562_10585 PF03796 DnaB-like helicase C terminal domain NQ562_10590 PF01281 Ribosomal protein L9, N-terminal domain NQ562_10590 PF03948 Ribosomal protein L9, C-terminal domain NQ562_10595 PF02272 DHHA1 domain NQ562_10595 PF01368 DHH family NQ562_10610 PF01177 Asp/Glu/Hydantoin racemase NQ562_10615 PF00056 lactate/malate dehydrogenase, NAD binding domain NQ562_10615 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NQ562_10620 PF02447 GntP family permease NQ562_10630 PF01546 Peptidase family M20/M25/M40 NQ562_10635 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NQ562_10635 PF01926 50S ribosome-binding GTPase NQ562_10640 PF01926 50S ribosome-binding GTPase NQ562_10640 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NQ562_10650 PF00710 Asparaginase, N-terminal NQ562_10650 PF17763 Glutaminase/Asparaginase C-terminal domain NQ562_10655 PF00155 Aminotransferase class I and II NQ562_10670 PF07833 Copper amine oxidase N-terminal domain NQ562_10680 PF00486 Transcriptional regulatory protein, C terminal NQ562_10680 PF00072 Response regulator receiver domain NQ562_10685 PF00672 HAMP domain NQ562_10685 PF00512 His Kinase A (phospho-acceptor) domain NQ562_10685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NQ562_10685 PF13426 PAS domain NQ562_10690 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NQ562_10695 PF16363 GDP-mannose 4,6 dehydratase NQ562_10700 PF00395 S-layer homology domain NQ562_10720 PF17762 HTH domain found in ParB protein NQ562_10720 PF02195 ParB-like nuclease domain NQ562_10725 PF13614 AAA domain NQ562_10730 PF01717 Cobalamin-independent synthase, Catalytic domain NQ562_10735 PF03180 NLPA lipoprotein NQ562_10755 PF02527 rRNA small subunit methyltransferase G NQ562_10760 PF01134 Glucose inhibited division protein A NQ562_10760 PF13932 GidA associated domain NQ562_10765 PF01926 50S ribosome-binding GTPase NQ562_10765 PF12631 MnmE helical domain NQ562_10765 PF10396 GTP-binding protein TrmE N-terminus NQ562_10770 PF14804 Jag N-terminus NQ562_10770 PF01424 R3H domain NQ562_10775 PF02096 60Kd inner membrane protein NQ562_10775 PF14849 YidC periplasmic domain NQ562_10780 PF01809 Putative membrane protein insertion efficiency factor NQ562_10785 PF00825 Ribonuclease P NQ562_10790 PF00468 Ribosomal protein L34 NQ562_10795 PF07722 Peptidase C26 NQ562_10800 PF00884 Sulfatase NQ562_10810 PF01235 Sodium:alanine symporter family NQ562_10815 PF07722 Peptidase C26 NQ562_10830 PF00860 Permease family NQ562_10835 PF00156 Phosphoribosyl transferase domain NQ562_10840 PF07676 WD40-like Beta Propeller Repeat NQ562_10840 PF00326 Prolyl oligopeptidase family