locus-tag class description C4901_00010 PF00308 Bacterial dnaA protein C4901_00010 PF08299 Bacterial dnaA protein helix-turn-helix C4901_00010 PF11638 DnaA N-terminal domain C4901_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain C4901_00015 PF02767 DNA polymerase III beta subunit, central domain C4901_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain C4901_00020 PF02463 RecF/RecN/SMC N terminal domain C4901_00025 PF18053 DNA gyrase B subunit insert domain C4901_00025 PF01751 Toprim domain C4901_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_00025 PF00204 DNA gyrase B C4901_00025 PF00986 DNA gyrase B subunit, carboxyl terminus C4901_00035 PF02390 Putative methyltransferase C4901_00040 PF05690 Thiazole biosynthesis protein ThiG C4901_00045 PF05690 Thiazole biosynthesis protein ThiG C4901_00045 PF02597 ThiS family C4901_00110 PF00633 Helix-hairpin-helix motif C4901_00110 PF10576 Iron-sulfur binding domain of endonuclease III C4901_00110 PF00730 HhH-GPD superfamily base excision DNA repair protein C4901_00110 PF14815 NUDIX domain C4901_00115 PF04362 Bacterial Fe(2+) trafficking C4901_00120 PF01738 Dienelactone hydrolase family C4901_00165 PF02470 MlaD protein C4901_00170 PF04403 Paraquat-inducible protein A C4901_00175 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C4901_00175 PF06481 COX Aromatic Rich Motif C4901_00180 PF00115 Cytochrome C and Quinol oxidase polypeptide I C4901_00185 PF00510 Cytochrome c oxidase subunit III C4901_00200 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C4901_00200 PF01266 FAD dependent oxidoreductase C4901_00205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C4901_00205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C4901_00215 PF13419 Haloacid dehalogenase-like hydrolase C4901_00230 PF00873 AcrB/AcrD/AcrF family C4901_00245 PF01964 Radical SAM ThiC family C4901_00245 PF13667 ThiC-associated domain C4901_00265 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C4901_00270 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C4901_00275 PF00535 Glycosyl transferase family 2 C4901_00320 PF13537 Glutamine amidotransferase domain C4901_00320 PF00733 Asparagine synthase C4901_00325 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C4901_00330 PF00534 Glycosyl transferases group 1 C4901_00330 PF13439 Glycosyltransferase Family 4 C4901_00335 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C4901_00390 PF00485 Phosphoribulokinase / Uridine kinase family C4901_00395 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C4901_00405 PF01063 Amino-transferase class IV C4901_00410 PF01596 O-methyltransferase C4901_00415 PF07497 Rho termination factor, RNA-binding domain C4901_00415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C4901_00415 PF07498 Rho termination factor, N-terminal domain C4901_00420 PF00085 Thioredoxin C4901_00425 PF12300 ATP-dependent RNA helicase RhlB C4901_00425 PF00271 Helicase conserved C-terminal domain C4901_00425 PF00270 DEAD/DEAH box helicase C4901_00430 PF03079 ARD/ARD' family C4901_00435 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain C4901_00435 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain C4901_00440 PF00596 Class II Aldolase and Adducin N-terminal domain C4901_00490 PF13098 Thioredoxin-like domain C4901_00495 PF01218 Coproporphyrinogen III oxidase C4901_00500 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C4901_00500 PF02843 Phosphoribosylglycinamide synthetase, C domain C4901_00500 PF02844 Phosphoribosylglycinamide synthetase, N domain C4901_00505 PF01808 AICARFT/IMPCHase bienzyme C4901_00505 PF02142 MGS-like domain C4901_00510 PF02954 Bacterial regulatory protein, Fis family C4901_00515 PF01207 Dihydrouridine synthase (Dus) C4901_00530 PF00289 Biotin carboxylase, N-terminal domain C4901_00530 PF02785 Biotin carboxylase C-terminal domain C4901_00530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C4901_00535 PF00364 Biotin-requiring enzyme C4901_00540 PF01220 Dehydroquinase class II C4901_00545 PF00578 AhpC/TSA family C4901_00550 PF11412 Disulphide bond corrector protein DsbC C4901_00550 PF02683 Cytochrome C biogenesis protein transmembrane region C4901_00555 PF03091 CutA1 divalent ion tolerance protein C4901_00565 PF04186 FxsA cytoplasmic membrane protein C4901_00570 PF00166 Chaperonin 10 Kd subunit C4901_00575 PF00118 TCP-1/cpn60 chaperonin family C4901_00585 PF13193 AMP-binding enzyme C-terminal domain C4901_00585 PF00501 AMP-binding enzyme C4901_00585 PF00668 Condensation domain C4901_00585 PF00550 Phosphopantetheine attachment site C4901_00585 PF00975 Thioesterase domain C4901_00590 PF07977 FabA-like domain C4901_00610 PF01494 FAD binding domain C4901_00650 PF03006 Haemolysin-III related C4901_00660 PF00301 Rubredoxin C4901_00670 PF08543 Phosphomethylpyrimidine kinase C4901_00675 PF02581 Thiamine monophosphate synthase C4901_00680 PF00202 Aminotransferase class-III C4901_00690 PF00990 Diguanylate cyclase, GGDEF domain C4901_00690 PF17151 Periplasmic sensor domain C4901_00695 PF01965 DJ-1/PfpI family C4901_00710 PF04379 ApaG domain C4901_00715 PF00149 Calcineurin-like phosphoesterase C4901_00720 PF00561 alpha/beta hydrolase fold C4901_00725 PF16658 Class II release factor RF3, C-terminal domain C4901_00725 PF03144 Elongation factor Tu domain 2 C4901_00725 PF00009 Elongation factor Tu GTP binding domain C4901_00740 PF16925 Tetracyclin repressor-like, C-terminal domain C4901_00740 PF00440 Bacterial regulatory proteins, tetR family C4901_00765 PF02219 Methylenetetrahydrofolate reductase C4901_00770 PF05221 S-adenosyl-L-homocysteine hydrolase C4901_00770 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C4901_00775 PF02773 S-adenosylmethionine synthetase, C-terminal domain C4901_00775 PF02772 S-adenosylmethionine synthetase, central domain C4901_00775 PF00438 S-adenosylmethionine synthetase, N-terminal domain C4901_00780 PF01171 PP-loop family C4901_00785 PF03279 Bacterial lipid A biosynthesis acyltransferase C4901_00795 PF03279 Bacterial lipid A biosynthesis acyltransferase C4901_00805 PF01189 16S rRNA methyltransferase RsmB/F C4901_00805 PF01029 NusB family C4901_00810 PF00551 Formyl transferase C4901_00810 PF02911 Formyl transferase, C-terminal domain C4901_00815 PF01327 Polypeptide deformylase C4901_00825 PF04361 Protein of unknown function (DUF494) C4901_00830 PF13368 Topoisomerase C-terminal repeat C4901_00830 PF01131 DNA topoisomerase C4901_00830 PF01751 Toprim domain C4901_00835 PF02683 Cytochrome C biogenesis protein transmembrane region C4901_00835 PF11412 Disulphide bond corrector protein DsbC C4901_00845 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C4901_00845 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C4901_00850 PF02556 Preprotein translocase subunit SecB C4901_00855 PF00462 Glutaredoxin C4901_00860 PF00581 Rhodanese-like domain C4901_00870 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C4901_00870 PF01676 Metalloenzyme superfamily C4901_00875 PF01551 Peptidase family M23 C4901_00880 PF03572 Peptidase family S41 C4901_00880 PF13180 PDZ domain C4901_00895 PF03109 ABC1 family C4901_00910 PF01209 ubiE/COQ5 methyltransferase family C4901_00920 PF00486 Transcriptional regulatory protein, C terminal C4901_00920 PF00072 Response regulator receiver domain C4901_00925 PF11808 Phosphate regulon sensor protein PhoR C4901_00925 PF00989 PAS fold C4901_00925 PF00512 His Kinase A (phospho-acceptor) domain C4901_00925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_00960 PF00890 FAD binding domain C4901_00960 PF02910 Fumarate reductase flavoprotein C-term C4901_00975 PF11953 Domain of unknown function (DUF3470) C4901_00975 PF00037 4Fe-4S binding domain C4901_00980 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_00995 PF00528 Binding-protein-dependent transport system inner membrane component C4901_01000 PF00005 ABC transporter C4901_01010 PF00005 ABC transporter C4901_01015 PF01895 PhoU domain C4901_01020 PF00490 Delta-aminolevulinic acid dehydratase C4901_01025 PF05191 Adenylate kinase, active site lid C4901_01035 PF00365 Phosphofructokinase C4901_01045 PF03030 Inorganic H+ pyrophosphatase C4901_01060 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase C4901_01065 PF00892 EamA-like transporter family C4901_01070 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C4901_01075 PF00535 Glycosyl transferase family 2 C4901_01080 PF01370 NAD dependent epimerase/dehydratase family C4901_01080 PF02911 Formyl transferase, C-terminal domain C4901_01080 PF00551 Formyl transferase C4901_01085 PF02911 Formyl transferase, C-terminal domain C4901_01085 PF01370 NAD dependent epimerase/dehydratase family C4901_01085 PF00551 Formyl transferase C4901_01090 PF01522 Polysaccharide deacetylase C4901_01095 PF04408 Helicase associated domain (HA2) C4901_01095 PF08482 ATP-dependent helicase C-terminal C4901_01095 PF00270 DEAD/DEAH box helicase C4901_01095 PF00271 Helicase conserved C-terminal domain C4901_01100 PF06968 Biotin and Thiamin Synthesis associated domain C4901_01100 PF04055 Radical SAM superfamily C4901_01105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C4901_01105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C4901_01105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C4901_01125 PF00483 Nucleotidyl transferase C4901_01130 PF01636 Phosphotransferase enzyme family C4901_01135 PF04453 LPS transport system D C4901_01135 PF03968 OstA-like protein C4901_01140 PF09312 SurA N-terminal domain C4901_01140 PF00639 PPIC-type PPIASE domain C4901_01145 PF04166 Pyridoxal phosphate biosynthetic protein PdxA C4901_01150 PF00398 Ribosomal RNA adenine dimethylase C4901_01175 PF02092 Glycyl-tRNA synthetase beta subunit C4901_01175 PF05746 DALR anticodon binding domain C4901_01180 PF02091 Glycyl-tRNA synthetase alpha subunit C4901_01185 PF00912 Transglycosylase C4901_01205 PF03951 Glutamine synthetase, beta-Grasp domain C4901_01205 PF00120 Glutamine synthetase, catalytic domain C4901_01220 PF13545 Crp-like helix-turn-helix domain C4901_01220 PF00027 Cyclic nucleotide-binding domain C4901_01280 PF00317 Ribonucleotide reductase, all-alpha domain C4901_01280 PF02867 Ribonucleotide reductase, barrel domain C4901_01280 PF03477 ATP cone domain C4901_01290 PF16199 Radical_SAM C-terminal domain C4901_01290 PF04055 Radical SAM superfamily C4901_01330 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C4901_01335 PF04055 Radical SAM superfamily C4901_01335 PF06969 HemN C-terminal domain C4901_01345 PF03060 Nitronate monooxygenase C4901_01355 PF03006 Haemolysin-III related C4901_01380 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family C4901_01380 PF04055 Radical SAM superfamily C4901_01385 PF03099 Biotin/lipoate A/B protein ligase family C4901_01410 PF04359 Protein of unknown function (DUF493) C4901_01415 PF01063 Amino-transferase class IV C4901_01420 PF05036 Sporulation related domain C4901_01420 PF03330 Lytic transglycolase C4901_01425 PF01098 Cell cycle protein C4901_01430 PF03717 Penicillin-binding Protein dimerisation domain C4901_01430 PF00905 Penicillin binding protein transpeptidase domain C4901_01435 PF04093 rod shape-determining protein MreD C4901_01440 PF04085 rod shape-determining protein MreC C4901_01450 PF02686 Glu-tRNAGln amidotransferase C subunit C4901_01455 PF01425 Amidase C4901_01460 PF02637 GatB domain C4901_01460 PF02934 GatB/GatE catalytic domain C4901_01505 PF08241 Methyltransferase domain C4901_01535 PF08406 CbbQ/NirQ/NorQ C-terminal C4901_01535 PF07728 AAA domain (dynein-related subfamily) C4901_01540 PF01593 Flavin containing amine oxidoreductase C4901_01545 PF01593 Flavin containing amine oxidoreductase C4901_01555 PF02754 Cysteine-rich domain C4901_01560 PF01381 Helix-turn-helix C4901_01580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C4901_01580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C4901_01595 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain C4901_01595 PF00730 HhH-GPD superfamily base excision DNA repair protein C4901_01600 PF01566 Natural resistance-associated macrophage protein C4901_01605 PF00512 His Kinase A (phospho-acceptor) domain C4901_01605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_01605 PF00989 PAS fold C4901_01610 PF02954 Bacterial regulatory protein, Fis family C4901_01610 PF00158 Sigma-54 interaction domain C4901_01610 PF00072 Response regulator receiver domain C4901_01625 PF00005 ABC transporter C4901_01630 PF02405 Permease MlaE C4901_01635 PF01494 FAD binding domain C4901_01640 PF01494 FAD binding domain C4901_01645 PF05195 Aminopeptidase P, N-terminal domain C4901_01645 PF00557 Metallopeptidase family M24 C4901_01665 PF01812 5-formyltetrahydrofolate cyclo-ligase family C4901_01670 PF13277 YmdB-like protein C4901_01690 PF00585 C-terminal regulatory domain of Threonine dehydratase C4901_01690 PF00291 Pyridoxal-phosphate dependent enzyme C4901_01700 PF00563 EAL domain C4901_01700 PF03707 Bacterial signalling protein N terminal repeat C4901_01700 PF00990 Diguanylate cyclase, GGDEF domain C4901_01710 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C4901_01715 PF00107 Zinc-binding dehydrogenase C4901_01715 PF08240 Alcohol dehydrogenase GroES-like domain C4901_01720 PF00085 Thioredoxin C4901_01725 PF00588 SpoU rRNA Methylase family C4901_01730 PF08334 Type II secretion system (T2SS), protein G C4901_01730 PF07963 Prokaryotic N-terminal methylation motif C4901_01755 PF00437 Type II/IV secretion system protein C4901_01760 PF00482 Type II secretion system (T2SS), protein F C4901_01780 PF03958 Bacterial type II/III secretion system short domain C4901_01780 PF00263 Bacterial type II and III secretion system protein C4901_01785 PF01471 Putative peptidoglycan binding domain C4901_01785 PF13401 AAA domain C4901_01805 PF00155 Aminotransferase class I and II C4901_01810 PF12697 Alpha/beta hydrolase family C4901_01815 PF08241 Methyltransferase domain C4901_01885 PF04542 Sigma-70 region 2 C4901_01885 PF00140 Sigma-70 factor, region 1.2 C4901_01885 PF04545 Sigma-70, region 4 C4901_01890 PF18075 FtsX extracellular domain C4901_01895 PF00005 ABC transporter C4901_01900 PF02881 SRP54-type protein, helical bundle domain C4901_01900 PF00448 SRP54-type protein, GTPase domain C4901_01905 PF00037 4Fe-4S binding domain C4901_01910 PF01467 Cytidylyltransferase-like C4901_01920 PF00654 Voltage gated chloride channel C4901_01930 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C4901_01930 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C4901_01930 PF06827 Zinc finger found in FPG and IleRS C4901_01950 PF00005 ABC transporter C4901_01955 PF00175 Oxidoreductase NAD-binding domain C4901_01955 PF00111 2Fe-2S iron-sulfur cluster binding domain C4901_01955 PF00970 Oxidoreductase FAD-binding domain C4901_01960 PF01545 Cation efflux family C4901_01965 PF13173 AAA domain C4901_01965 PF13635 Domain of unknown function (DUF4143) C4901_01980 PF09957 Bacterial antitoxin of type II TA system, VapB C4901_02075 PF09827 CRISPR associated protein Cas2 C4901_02080 PF01867 CRISPR associated protein Cas1 C4901_02155 PF07719 Tetratricopeptide repeat C4901_02155 PF07219 HemY protein N-terminus C4901_02165 PF02602 Uroporphyrinogen-III synthase HemD C4901_02170 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C4901_02170 PF03900 Porphobilinogen deaminase, C-terminal domain C4901_02190 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C4901_02200 PF07690 Major Facilitator Superfamily C4901_02205 PF00581 Rhodanese-like domain C4901_02210 PF01925 Sulfite exporter TauE/SafE C4901_02220 PF00206 Lyase C4901_02220 PF14698 Argininosuccinate lyase C-terminal C4901_02225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_02225 PF06580 Histidine kinase C4901_02225 PF07694 5TMR of 5TMR-LYT C4901_02230 PF04397 LytTr DNA-binding domain C4901_02230 PF00072 Response regulator receiver domain C4901_02240 PF00535 Glycosyl transferase family 2 C4901_02245 PF00857 Isochorismatase family C4901_02255 PF01370 NAD dependent epimerase/dehydratase family C4901_02255 PF02222 ATP-grasp domain C4901_02265 PF01850 PIN domain C4901_02280 PF05362 Lon protease (S16) C-terminal proteolytic domain C4901_02280 PF00004 ATPase family associated with various cellular activities (AAA) C4901_02280 PF02190 ATP-dependent protease La (LON) substrate-binding domain C4901_02290 PF01491 Frataxin-like domain C4901_02300 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C4901_02300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C4901_02305 PF01678 Diaminopimelate epimerase C4901_02315 PF00589 Phage integrase family C4901_02315 PF02899 Phage integrase, N-terminal SAM-like domain C4901_02325 PF00227 Proteasome subunit C4901_02330 PF07724 AAA domain (Cdc48 subfamily) C4901_02330 PF10431 C-terminal, D2-small domain, of ClpB protein C4901_02330 PF00004 ATPase family associated with various cellular activities (AAA) C4901_02335 PF00689 Cation transporting ATPase, C-terminus C4901_02335 PF00690 Cation transporter/ATPase, N-terminus C4901_02340 PF00571 CBS domain C4901_02340 PF00478 IMP dehydrogenase / GMP reductase domain C4901_02345 PF00011 Hsp20/alpha crystallin family C4901_02350 PF00696 Amino acid kinase family C4901_02360 PF00440 Bacterial regulatory proteins, tetR family C4901_02375 PF00899 ThiF family C4901_02380 PF05175 Methyltransferase small domain C4901_02380 PF17827 PrmC N-terminal domain C4901_02385 PF03462 PCRF domain C4901_02385 PF00472 RF-1 domain C4901_02390 PF01488 Shikimate / quinate 5-dehydrogenase C4901_02390 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C4901_02390 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C4901_02405 PF03550 Outer membrane lipoprotein LolB C4901_02410 PF00288 GHMP kinases N terminal domain C4901_02410 PF08544 GHMP kinases C terminal C4901_02420 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C4901_02420 PF14572 Phosphoribosyl synthetase-associated domain C4901_02425 PF14693 Ribosomal protein TL5, C-terminal domain C4901_02425 PF01386 Ribosomal L25p family C4901_02430 PF01195 Peptidyl-tRNA hydrolase C4901_02435 PF06071 Protein of unknown function (DUF933) C4901_02435 PF01926 50S ribosome-binding GTPase C4901_02445 PF00589 Phage integrase family C4901_02475 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB C4901_02480 PF01381 Helix-turn-helix C4901_02515 PF00176 SNF2 family N-terminal domain C4901_02515 PF00271 Helicase conserved C-terminal domain C4901_02515 PF12419 SNF2 Helicase protein C4901_02535 PF01797 Transposase IS200 like C4901_02540 PF14403 Circularly permuted ATP-grasp type 2 C4901_02540 PF04168 A predicted alpha-helical domain with a conserved ER motif. C4901_02545 PF14403 Circularly permuted ATP-grasp type 2 C4901_02570 PF02641 Uncharacterized ACR, COG1993 C4901_02575 PF00361 Proton-conducting membrane transporter C4901_02580 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C4901_02585 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C4901_02585 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C4901_02590 PF00361 Proton-conducting membrane transporter C4901_02590 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C4901_02600 PF00146 NADH dehydrogenase C4901_02605 PF00034 Cytochrome c C4901_02620 PF02254 TrkA-N domain C4901_02620 PF07885 Ion channel C4901_02645 PF00085 Thioredoxin C4901_02650 PF03631 Virulence factor BrkB C4901_02655 PF02445 Quinolinate synthetase A protein C4901_02670 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C4901_02670 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C4901_02675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C4901_02675 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C4901_02680 PF00313 'Cold-shock' DNA-binding domain C4901_02690 PF01565 FAD binding domain C4901_02690 PF02913 FAD linked oxidases, C-terminal domain C4901_02695 PF01565 FAD binding domain C4901_02700 PF13183 4Fe-4S dicluster domain C4901_02700 PF02754 Cysteine-rich domain C4901_02715 PF00919 Uncharacterized protein family UPF0004 C4901_02715 PF01938 TRAM domain C4901_02715 PF04055 Radical SAM superfamily C4901_02720 PF02562 PhoH-like protein C4901_02725 PF02130 Uncharacterized protein family UPF0054 C4901_02730 PF00571 CBS domain C4901_02730 PF03471 Transporter associated domain C4901_02735 PF00795 Carbon-nitrogen hydrolase C4901_02750 PF01548 Transposase C4901_02750 PF02371 Transposase IS116/IS110/IS902 family C4901_02810 PF16123 Hydroxyacylglutathione hydrolase C-terminus C4901_02810 PF00753 Metallo-beta-lactamase superfamily C4901_02830 PF08264 Anticodon-binding domain of tRNA C4901_02830 PF13603 Leucyl-tRNA synthetase, Domain 2 C4901_02830 PF09334 tRNA synthetases class I (M) C4901_02830 PF00133 tRNA synthetases class I (I, L, M and V) C4901_02835 PF04390 Lipopolysaccharide-assembly C4901_02845 PF00171 Aldehyde dehydrogenase family C4901_02850 PF01467 Cytidylyltransferase-like C4901_02860 PF02590 Predicted SPOUT methyltransferase C4901_02865 PF02545 Maf-like protein C4901_02870 PF10150 Ribonuclease E/G family C4901_02870 PF00575 S1 RNA binding domain C4901_02880 PF00795 Carbon-nitrogen hydrolase C4901_02885 PF01523 Putative modulator of DNA gyrase C4901_02890 PF01523 Putative modulator of DNA gyrase C4901_02900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C4901_02900 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_02960 PF00391 PEP-utilising enzyme, mobile domain C4901_02960 PF05524 PEP-utilising enzyme, N-terminal C4901_02960 PF02896 PEP-utilising enzyme, TIM barrel domain C4901_02965 PF00381 PTS HPr component phosphorylation site C4901_02975 PF03668 P-loop ATPase protein family C4901_02980 PF07475 HPr Serine kinase C-terminal domain C4901_02980 PF02603 HPr Serine kinase N terminus C4901_02985 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C4901_02990 PF00309 Sigma-54 factor, Activator interacting domain (AID) C4901_02990 PF04552 Sigma-54, DNA binding domain C4901_02990 PF04963 Sigma-54 factor, core binding domain C4901_02995 PF00005 ABC transporter C4901_02995 PF12399 Branched-chain amino acid ATP-binding cassette transporter C4901_03005 PF01554 MatE C4901_03015 PF01380 SIS domain C4901_03015 PF00571 CBS domain C4901_03025 PF00005 ABC transporter C4901_03085 PF00005 ABC transporter C4901_03090 PF02405 Permease MlaE C4901_03095 PF02470 MlaD protein C4901_03110 PF00005 ABC transporter C4901_03115 PF01061 ABC-2 type transporter C4901_03120 PF01722 BolA-like protein C4901_03125 PF00462 Glutaredoxin C4901_03130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C4901_03135 PF01634 ATP phosphoribosyltransferase C4901_03140 PF00815 Histidinol dehydrogenase C4901_03145 PF00155 Aminotransferase class I and II C4901_03150 PF00475 Imidazoleglycerol-phosphate dehydratase C4901_03155 PF00117 Glutamine amidotransferase class-I C4901_03160 PF00977 Histidine biosynthesis protein C4901_03165 PF00977 Histidine biosynthesis protein C4901_03170 PF01502 Phosphoribosyl-AMP cyclohydrolase C4901_03175 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase C4901_03185 PF02416 mttA/Hcf106 family C4901_03190 PF02416 mttA/Hcf106 family C4901_03195 PF00902 Sec-independent protein translocase protein (TatC) C4901_03200 PF07690 Major Facilitator Superfamily C4901_03205 PF00534 Glycosyl transferases group 1 C4901_03205 PF13439 Glycosyltransferase Family 4 C4901_03215 PF13180 PDZ domain C4901_03215 PF00595 PDZ domain C4901_03220 PF00043 Glutathione S-transferase, C-terminal domain C4901_03220 PF02798 Glutathione S-transferase, N-terminal domain C4901_03225 PF04386 Stringent starvation protein B C4901_03250 PF02913 FAD linked oxidases, C-terminal domain C4901_03250 PF01565 FAD binding domain C4901_03255 PF01467 Cytidylyltransferase-like C4901_03265 PF13580 SIS domain C4901_03275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C4901_03290 PF00034 Cytochrome c C4901_03305 PF00033 Cytochrome b/b6/petB C4901_03305 PF00032 Cytochrome b(C-terminal)/b6/petD C4901_03310 PF02167 Cytochrome C1 family C4901_03320 PF00113 Enolase, C-terminal TIM barrel domain C4901_03320 PF03952 Enolase, N-terminal domain C4901_03330 PF07690 Major Facilitator Superfamily C4901_03340 PF00563 EAL domain C4901_03340 PF00990 Diguanylate cyclase, GGDEF domain C4901_03340 PF03707 Bacterial signalling protein N terminal repeat C4901_03345 PF00923 Transaldolase/Fructose-6-phosphate aldolase C4901_03355 PF02381 MraZ protein, putative antitoxin-like C4901_03360 PF01795 MraW methylase family C4901_03370 PF03717 Penicillin-binding Protein dimerisation domain C4901_03370 PF00905 Penicillin binding protein transpeptidase domain C4901_03375 PF01225 Mur ligase family, catalytic domain C4901_03375 PF08245 Mur ligase middle domain C4901_03375 PF02875 Mur ligase family, glutamate ligase domain C4901_03380 PF08245 Mur ligase middle domain C4901_03380 PF02875 Mur ligase family, glutamate ligase domain C4901_03380 PF01225 Mur ligase family, catalytic domain C4901_03385 PF00953 Glycosyl transferase family 4 C4901_03385 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 C4901_03390 PF08245 Mur ligase middle domain C4901_03390 PF02875 Mur ligase family, glutamate ligase domain C4901_03395 PF01098 Cell cycle protein C4901_03400 PF03033 Glycosyltransferase family 28 N-terminal domain C4901_03400 PF04101 Glycosyltransferase family 28 C-terminal domain C4901_03405 PF08245 Mur ligase middle domain C4901_03405 PF02875 Mur ligase family, glutamate ligase domain C4901_03405 PF01225 Mur ligase family, catalytic domain C4901_03410 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C4901_03410 PF01565 FAD binding domain C4901_03415 PF01820 D-ala D-ala ligase N-terminus C4901_03415 PF07478 D-ala D-ala ligase C-terminus C4901_03420 PF03799 Cell division protein FtsQ C4901_03420 PF08478 POTRA domain, FtsQ-type C4901_03425 PF02491 SHS2 domain inserted in FTSA C4901_03430 PF00091 Tubulin/FtsZ family, GTPase domain C4901_03430 PF12327 FtsZ family, C-terminal domain C4901_03435 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C4901_03445 PF01551 Peptidase family M23 C4901_03445 PF04225 Opacity-associated protein A LysM-like domain C4901_03450 PF07517 SecA DEAD-like domain C4901_03450 PF01043 SecA preprotein cross-linking domain C4901_03450 PF07516 SecA Wing and Scaffold domain C4901_03450 PF02810 SEC-C motif C4901_03455 PF01960 ArgJ family C4901_03460 PF00293 NUDIX domain C4901_03495 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C4901_03495 PF01348 Type II intron maturase C4901_03525 PF00472 RF-1 domain C4901_03535 PF00484 Carbonic anhydrase C4901_03545 PF00158 Sigma-54 interaction domain C4901_03545 PF02954 Bacterial regulatory protein, Fis family C4901_03545 PF00072 Response regulator receiver domain C4901_03560 PF00005 ABC transporter C4901_03575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C4901_03575 PF00056 lactate/malate dehydrogenase, NAD binding domain C4901_03585 PF01121 Dephospho-CoA kinase C4901_03590 PF01478 Type IV leader peptidase family C4901_03590 PF06750 Bacterial Peptidase A24 N-terminal domain C4901_03595 PF00437 Type II/IV secretion system protein C4901_03595 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C4901_03600 PF02915 Rubrerythrin C4901_03620 PF00986 DNA gyrase B subunit, carboxyl terminus C4901_03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_03620 PF00204 DNA gyrase B C4901_03620 PF01751 Toprim domain C4901_03625 PF03989 DNA gyrase C-terminal domain, beta-propeller C4901_03625 PF00521 DNA gyrase/topoisomerase IV, subunit A C4901_03630 PF01416 tRNA pseudouridine synthase C4901_03650 PF02040 Arsenical pump membrane protein C4901_03655 PF02040 Arsenical pump membrane protein C4901_03660 PF01548 Transposase C4901_03660 PF02371 Transposase IS116/IS110/IS902 family C4901_03665 PF00563 EAL domain C4901_03665 PF03707 Bacterial signalling protein N terminal repeat C4901_03665 PF00990 Diguanylate cyclase, GGDEF domain C4901_03715 PF00665 Integrase core domain C4901_03720 PF05736 OprF membrane domain C4901_03720 PF00691 OmpA family C4901_03725 PF02040 Arsenical pump membrane protein C4901_03730 PF02562 PhoH-like protein C4901_03730 PF13638 PIN domain C4901_03735 PF00578 AhpC/TSA family C4901_03740 PF00512 His Kinase A (phospho-acceptor) domain C4901_03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_03740 PF00072 Response regulator receiver domain C4901_03740 PF01627 Hpt domain C4901_03745 PF00989 PAS fold C4901_03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_03745 PF00512 His Kinase A (phospho-acceptor) domain C4901_03760 PF00072 Response regulator receiver domain C4901_03765 PF00701 Dihydrodipicolinate synthetase family C4901_03770 PF02769 AIR synthase related protein, C-terminal domain C4901_03770 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C4901_03770 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C4901_03775 PF10437 Bacterial lipoate protein ligase C-terminus C4901_03775 PF03099 Biotin/lipoate A/B protein ligase family C4901_03785 PF01597 Glycine cleavage H-protein C4901_03815 PF00005 ABC transporter C4901_03815 PF00664 ABC transporter transmembrane region C4901_03820 PF12848 ABC transporter C4901_03820 PF00005 ABC transporter C4901_03830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C4901_03830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C4901_03835 PF00202 Aminotransferase class-III C4901_03840 PF00883 Cytosol aminopeptidase family, catalytic domain C4901_03840 PF02789 Cytosol aminopeptidase family, N-terminal domain C4901_03845 PF00676 Dehydrogenase E1 component C4901_03850 PF02779 Transketolase, pyrimidine binding domain C4901_03850 PF00364 Biotin-requiring enzyme C4901_03850 PF02780 Transketolase, C-terminal domain C4901_03855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C4901_03855 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_03860 PF00764 Arginosuccinate synthase C4901_03865 PF00512 His Kinase A (phospho-acceptor) domain C4901_03865 PF00989 PAS fold C4901_03865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_03890 PF10576 Iron-sulfur binding domain of endonuclease III C4901_03890 PF00730 HhH-GPD superfamily base excision DNA repair protein C4901_03890 PF00633 Helix-hairpin-helix motif C4901_03905 PF06508 Queuosine biosynthesis protein QueC C4901_03910 PF00873 AcrB/AcrD/AcrF family C4901_03950 PF01588 Putative tRNA binding domain C4901_03950 PF09334 tRNA synthetases class I (M) C4901_03965 PF10609 NUBPL iron-transfer P-loop NTPase C4901_03970 PF00692 dUTPase C4901_03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_03975 PF03459 TOBE domain C4901_03990 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C4901_03990 PF08240 Alcohol dehydrogenase GroES-like domain C4901_04005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C4901_04005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C4901_04005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C4901_04005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C4901_04010 PF00692 dUTPase C4901_04015 PF02441 Flavoprotein C4901_04015 PF04127 DNA / pantothenate metabolism flavoprotein C4901_04020 PF04002 RadC-like JAB domain C4901_04030 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C4901_04030 PF01568 Molydopterin dinucleotide binding domain C4901_04030 PF00384 Molybdopterin oxidoreductase C4901_04030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C4901_04030 PF12838 4Fe-4S dicluster domain C4901_04035 PF00830 Ribosomal L28 family C4901_04040 PF00471 Ribosomal protein L33 C4901_04060 PF00293 NUDIX domain C4901_04075 PF04542 Sigma-70 region 2 C4901_04075 PF08281 Sigma-70, region 4 C4901_04080 PF00551 Formyl transferase C4901_04085 PF02769 AIR synthase related protein, C-terminal domain C4901_04085 PF00586 AIR synthase related protein, N-terminal domain C4901_04090 PF01066 CDP-alcohol phosphatidyltransferase C4901_04095 PF01594 AI-2E family transporter C4901_04100 PF00308 Bacterial dnaA protein C4901_04105 PF03358 NADPH-dependent FMN reductase C4901_04110 PF10415 Fumarase C C-terminus C4901_04110 PF00206 Lyase C4901_04115 PF00459 Inositol monophosphatase family C4901_04120 PF05724 Thiopurine S-methyltransferase (TPMT) C4901_04135 PF01592 NifU-like N terminal domain C4901_04135 PF04324 BFD-like [2Fe-2S] binding domain C4901_04135 PF01106 NifU-like domain C4901_04150 PF01339 CheB methylesterase C4901_04150 PF00072 Response regulator receiver domain C4901_04160 PF07690 Major Facilitator Superfamily C4901_04170 PF00581 Rhodanese-like domain C4901_04170 PF00753 Metallo-beta-lactamase superfamily C4901_04175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C4901_04180 PF00152 tRNA synthetases class II (D, K and N) C4901_04185 PF01132 Elongation factor P (EF-P) OB domain C4901_04185 PF09285 Elongation factor P, C-terminal C4901_04185 PF08207 Elongation factor P (EF-P) KOW-like domain C4901_04190 PF04055 Radical SAM superfamily C4901_04200 PF10417 C-terminal domain of 1-Cys peroxiredoxin C4901_04200 PF00578 AhpC/TSA family C4901_04205 PF00708 Acylphosphatase C4901_04215 PF01464 Transglycosylase SLT domain C4901_04215 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain C4901_04220 PF03129 Anticodon binding domain C4901_04220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C4901_04220 PF04073 Aminoacyl-tRNA editing domain C4901_04235 PF13005 zinc-finger binding domain of transposase IS66 C4901_04235 PF13817 IS66 C-terminal element C4901_04235 PF13007 Transposase C of IS166 homeodomain C4901_04235 PF03050 Transposase IS66 family C4901_04270 PF00480 ROK family C4901_04275 PF00117 Glutamine amidotransferase class-I C4901_04280 PF07690 Major Facilitator Superfamily C4901_04290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C4901_04290 PF00529 HlyD membrane-fusion protein of T1SS C4901_04300 PF02649 Type I GTP cyclohydrolase folE2 C4901_04305 PF02780 Transketolase, C-terminal domain C4901_04305 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C4901_04305 PF02779 Transketolase, pyrimidine binding domain C4901_04310 PF00348 Polyprenyl synthetase C4901_04315 PF02609 Exonuclease VII small subunit C4901_04325 PF00719 Inorganic pyrophosphatase C4901_04370 PF01850 PIN domain C4901_04390 PF00248 Aldo/keto reductase family C4901_04395 PF00248 Aldo/keto reductase family C4901_04410 PF00107 Zinc-binding dehydrogenase C4901_04410 PF08240 Alcohol dehydrogenase GroES-like domain C4901_04415 PF03466 LysR substrate binding domain C4901_04415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_04425 PF01668 SmpB protein C4901_04435 PF03364 Polyketide cyclase / dehydrase and lipid transport C4901_04440 PF03658 RnfH family Ubiquitin C4901_04445 PF04355 SmpA / OmlA family C4901_04450 PF01475 Ferric uptake regulator family C4901_04455 PF00696 Amino acid kinase family C4901_04455 PF00583 Acetyltransferase (GNAT) family C4901_04460 PF02463 RecF/RecN/SMC N terminal domain C4901_04465 PF01513 ATP-NAD kinase C4901_04470 PF01628 HrcA protein C terminal domain C4901_04475 PF01025 GrpE C4901_04480 PF00012 Hsp70 protein C4901_04485 PF00684 DnaJ central domain C4901_04485 PF01556 DnaJ C terminal domain C4901_04485 PF00226 DnaJ domain C4901_04495 PF01113 Dihydrodipicolinate reductase, N-terminus C4901_04495 PF05173 Dihydrodipicolinate reductase, C-terminus C4901_04500 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C4901_04500 PF00117 Glutamine amidotransferase class-I C4901_04505 PF02142 MGS-like domain C4901_04505 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C4901_04505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C4901_04510 PF01272 Transcription elongation factor, GreA/GreB, C-term C4901_04510 PF03449 Transcription elongation factor, N-terminal C4901_04520 PF01728 FtsJ-like methyltransferase C4901_04525 PF17862 AAA+ lid domain C4901_04525 PF00004 ATPase family associated with various cellular activities (AAA) C4901_04525 PF01434 Peptidase family M41 C4901_04525 PF06480 FtsH Extracellular C4901_04530 PF00809 Pterin binding enzyme C4901_04535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C4901_04535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C4901_04535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C4901_04535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C4901_04540 PF00121 Triosephosphate isomerase C4901_04545 PF03840 Preprotein translocase SecG subunit C4901_04555 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C4901_04560 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C4901_04565 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C4901_04570 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C4901_04580 PF10531 SLBB domain C4901_04580 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C4901_04580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C4901_04585 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal C4901_04585 PF00384 Molybdopterin oxidoreductase C4901_04585 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C4901_04585 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal C4901_04585 PF00384 Molybdopterin oxidoreductase C4901_04585 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C4901_04590 PF00146 NADH dehydrogenase C4901_04595 PF12838 4Fe-4S dicluster domain C4901_04600 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C4901_04605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C4901_04610 PF00361 Proton-conducting membrane transporter C4901_04610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C4901_04615 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus C4901_04615 PF00361 Proton-conducting membrane transporter C4901_04620 PF00361 Proton-conducting membrane transporter C4901_04655 PF17384 RimP C-terminal SH3 domain C4901_04655 PF02576 RimP N-terminal domain C4901_04660 PF08529 NusA N-terminal domain C4901_04660 PF13184 NusA-like KH domain C4901_04665 PF04760 Translation initiation factor IF-2, N-terminal region C4901_04665 PF11987 Translation-initiation factor 2 C4901_04665 PF00009 Elongation factor Tu GTP binding domain C4901_04665 PF08364 Bacterial translation initiation factor IF-2 associated region C4901_04670 PF02033 Ribosome-binding factor A C4901_04675 PF16198 tRNA pseudouridylate synthase B C-terminal domain C4901_04675 PF01509 TruB family pseudouridylate synthase (N terminal domain) C4901_04675 PF09157 Pseudouridine synthase II TruB, C-terminal C4901_04680 PF00312 Ribosomal protein S15 C4901_04685 PF00013 KH domain C4901_04685 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C4901_04685 PF01138 3' exoribonuclease family, domain 1 C4901_04685 PF03725 3' exoribonuclease family, domain 2 C4901_04685 PF00575 S1 RNA binding domain C4901_04700 PF00561 alpha/beta hydrolase fold C4901_04705 PF16177 Acetyl-coenzyme A synthetase N-terminus C4901_04705 PF13193 AMP-binding enzyme C-terminal domain C4901_04705 PF00501 AMP-binding enzyme C4901_04710 PF09335 SNARE associated Golgi protein C4901_04715 PF01258 Prokaryotic dksA/traR C4-type zinc finger C4901_04720 PF13419 Haloacid dehalogenase-like hydrolase C4901_04725 PF01242 6-pyruvoyl tetrahydropterin synthase C4901_04730 PF13419 Haloacid dehalogenase-like hydrolase C4901_04740 PF01979 Amidohydrolase family C4901_04750 PF01008 Initiation factor 2 subunit family C4901_04755 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C4901_04755 PF06481 COX Aromatic Rich Motif C4901_04760 PF00115 Cytochrome C and Quinol oxidase polypeptide I C4901_04765 PF00510 Cytochrome c oxidase subunit III C4901_04775 PF13173 AAA domain C4901_04775 PF13635 Domain of unknown function (DUF4143) C4901_04785 PF01925 Sulfite exporter TauE/SafE C4901_04795 PF00723 Glycosyl hydrolases family 15 C4901_04800 PF02411 MerT mercuric transport protein C4901_04850 PF00512 His Kinase A (phospho-acceptor) domain C4901_04850 PF00989 PAS fold C4901_04850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_04855 PF00158 Sigma-54 interaction domain C4901_04855 PF00072 Response regulator receiver domain C4901_04855 PF02954 Bacterial regulatory protein, Fis family C4901_04860 PF00990 Diguanylate cyclase, GGDEF domain C4901_04860 PF03707 Bacterial signalling protein N terminal repeat C4901_04860 PF00563 EAL domain C4901_04870 PF00589 Phage integrase family C4901_04895 PF00589 Phage integrase family C4901_04910 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA C4901_04915 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C4901_04915 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C4901_04920 PF05116 Sucrose-6F-phosphate phosphohydrolase C4901_04920 PF00982 Glycosyltransferase family 20 C4901_04925 PF00982 Glycosyltransferase family 20 C4901_04935 PF00107 Zinc-binding dehydrogenase C4901_04935 PF08240 Alcohol dehydrogenase GroES-like domain C4901_04955 PF03958 Bacterial type II/III secretion system short domain C4901_04955 PF00263 Bacterial type II and III secretion system protein C4901_04960 PF00437 Type II/IV secretion system protein C4901_04965 PF00482 Type II secretion system (T2SS), protein F C4901_04970 PF08334 Type II secretion system (T2SS), protein G C4901_04970 PF07963 Prokaryotic N-terminal methylation motif C4901_04975 PF07963 Prokaryotic N-terminal methylation motif C4901_04975 PF12019 Type II transport protein GspH C4901_04980 PF02501 Type II secretion system (T2SS), protein I C4901_04980 PF07963 Prokaryotic N-terminal methylation motif C4901_04985 PF07963 Prokaryotic N-terminal methylation motif C4901_04985 PF11612 Type II secretion system (T2SS), protein J C4901_04990 PF03934 Type II secretion system (T2SS), protein K C4901_05015 PF04542 Sigma-70 region 2 C4901_05015 PF08281 Sigma-70, region 4 C4901_05020 PF02371 Transposase IS116/IS110/IS902 family C4901_05020 PF01548 Transposase C4901_05030 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_05060 PF00482 Type II secretion system (T2SS), protein F C4901_05095 PF02954 Bacterial regulatory protein, Fis family C4901_05095 PF00158 Sigma-54 interaction domain C4901_05095 PF00072 Response regulator receiver domain C4901_05100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_05100 PF00512 His Kinase A (phospho-acceptor) domain C4901_05115 PF00348 Polyprenyl synthetase C4901_05120 PF00829 Ribosomal prokaryotic L21 protein C4901_05125 PF01016 Ribosomal L27 protein C4901_05130 PF01018 GTP1/OBG C4901_05130 PF01926 50S ribosome-binding GTPase C4901_05135 PF01472 PUA domain C4901_05135 PF00696 Amino acid kinase family C4901_05140 PF01649 Ribosomal protein S20 C4901_05145 PF03023 Lipid II flippase MurJ C4901_05155 PF06574 FAD synthetase C4901_05155 PF01687 Riboflavin kinase C4901_05160 PF08264 Anticodon-binding domain of tRNA C4901_05160 PF00133 tRNA synthetases class I (I, L, M and V) C4901_05160 PF06827 Zinc finger found in FPG and IleRS C4901_05165 PF01252 Signal peptidase (SPase) II C4901_05170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C4901_05175 PF02401 LytB protein C4901_05180 PF01266 FAD dependent oxidoreductase C4901_05185 PF01475 Ferric uptake regulator family C4901_05230 PF00072 Response regulator receiver domain C4901_05230 PF13188 PAS domain C4901_05230 PF08448 PAS fold C4901_05230 PF00512 His Kinase A (phospho-acceptor) domain C4901_05230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_05250 PF01434 Peptidase family M41 C4901_05250 PF06480 FtsH Extracellular C4901_05250 PF00004 ATPase family associated with various cellular activities (AAA) C4901_05250 PF17862 AAA+ lid domain C4901_05265 PF03747 ADP-ribosylglycohydrolase C4901_05270 PF00905 Penicillin binding protein transpeptidase domain C4901_05270 PF00912 Transglycosylase C4901_05270 PF17092 Penicillin-binding protein OB-like domain C4901_05280 PF01790 Prolipoprotein diacylglyceryl transferase C4901_05285 PF01145 SPFH domain / Band 7 family C4901_05285 PF16200 C-terminal region of band_7 C4901_05295 PF00990 Diguanylate cyclase, GGDEF domain C4901_05295 PF13185 GAF domain C4901_05295 PF00563 EAL domain C4901_05320 PF01548 Transposase C4901_05320 PF02371 Transposase IS116/IS110/IS902 family C4901_05325 PF00753 Metallo-beta-lactamase superfamily C4901_05335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C4901_05340 PF00255 Glutathione peroxidase C4901_05345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C4901_05355 PF02401 LytB protein C4901_05360 PF04055 Radical SAM superfamily C4901_05360 PF06463 Molybdenum Cofactor Synthesis C C4901_05365 PF00535 Glycosyl transferase family 2 C4901_05375 PF04333 MlaA lipoprotein C4901_05380 PF01370 NAD dependent epimerase/dehydratase family C4901_05395 PF04794 YdjC-like protein C4901_05415 PF13249 Squalene-hopene cyclase N-terminal domain C4901_05415 PF13243 Squalene-hopene cyclase C-terminal domain C4901_05460 PF05199 GMC oxidoreductase C4901_05460 PF00732 GMC oxidoreductase C4901_05465 PF00043 Glutathione S-transferase, C-terminal domain C4901_05465 PF02798 Glutathione S-transferase, N-terminal domain C4901_05475 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C4901_05475 PF06481 COX Aromatic Rich Motif C4901_05480 PF00115 Cytochrome C and Quinol oxidase polypeptide I C4901_05485 PF00510 Cytochrome c oxidase subunit III C4901_05500 PF16861 Carbamoyltransferase C-terminus C4901_05500 PF02543 Carbamoyltransferase N-terminus C4901_05520 PF02798 Glutathione S-transferase, N-terminal domain C4901_05520 PF00043 Glutathione S-transferase, C-terminal domain C4901_05545 PF02151 UvrB/uvrC motif C4901_05545 PF17757 UvrB interaction domain C4901_05545 PF00271 Helicase conserved C-terminal domain C4901_05545 PF12344 Ultra-violet resistance protein B C4901_05545 PF04851 Type III restriction enzyme, res subunit C4901_05565 PF03129 Anticodon binding domain C4901_05565 PF02824 TGS domain C4901_05565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C4901_05565 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C4901_05570 PF05198 Translation initiation factor IF-3, N-terminal domain C4901_05570 PF00707 Translation initiation factor IF-3, C-terminal domain C4901_05575 PF01632 Ribosomal protein L35 C4901_05580 PF00453 Ribosomal protein L20 C4901_05585 PF01409 tRNA synthetases class II core domain (F) C4901_05585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C4901_05590 PF03147 Ferredoxin-fold anticodon binding domain C4901_05590 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C4901_05590 PF01588 Putative tRNA binding domain C4901_05590 PF03484 tRNA synthetase B5 domain C4901_05590 PF03483 B3/4 domain C4901_05595 PF00216 Bacterial DNA-binding protein C4901_05605 PF00581 Rhodanese-like domain C4901_05610 PF02798 Glutathione S-transferase, N-terminal domain C4901_05620 PF00909 Ammonium Transporter Family C4901_05625 PF16363 GDP-mannose 4,6 dehydratase C4901_05630 PF00723 Glycosyl hydrolases family 15 C4901_05630 PF09137 Glucodextranase, domain N C4901_05640 PF00512 His Kinase A (phospho-acceptor) domain C4901_05640 PF08448 PAS fold C4901_05640 PF13188 PAS domain C4901_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_05640 PF00072 Response regulator receiver domain C4901_05645 PF01339 CheB methylesterase C4901_05645 PF01739 CheR methyltransferase, SAM binding domain C4901_05645 PF03705 CheR methyltransferase, all-alpha domain C4901_05645 PF08448 PAS fold C4901_05690 PF00563 EAL domain C4901_05690 PF05231 MASE1 C4901_05735 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C4901_05755 PF00990 Diguanylate cyclase, GGDEF domain C4901_05755 PF03707 Bacterial signalling protein N terminal repeat C4901_05755 PF00563 EAL domain C4901_05760 PF00183 Hsp90 protein C4901_05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_05765 PF01259 SAICAR synthetase C4901_05775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C4901_05775 PF05698 Bacterial trigger factor protein (TF) C-terminus C4901_05775 PF05697 Bacterial trigger factor protein (TF) C4901_05780 PF00574 Clp protease C4901_05785 PF07724 AAA domain (Cdc48 subfamily) C4901_05785 PF10431 C-terminal, D2-small domain, of ClpB protein C4901_05785 PF06689 ClpX C4-type zinc finger C4901_05790 PF00004 ATPase family associated with various cellular activities (AAA) C4901_05790 PF05362 Lon protease (S16) C-terminal proteolytic domain C4901_05790 PF02190 ATP-dependent protease La (LON) substrate-binding domain C4901_05805 PF02634 FdhD/NarQ family C4901_05815 PF13145 PPIC-type PPIASE domain C4901_05825 PF01476 LysM domain C4901_05825 PF01464 Transglycosylase SLT domain C4901_05830 PF16123 Hydroxyacylglutathione hydrolase C-terminus C4901_05830 PF00753 Metallo-beta-lactamase superfamily C4901_05835 PF08241 Methyltransferase domain C4901_05840 PF00075 RNase H C4901_05845 PF00929 Exonuclease C4901_05850 PF07690 Major Facilitator Superfamily C4901_05855 PF00561 alpha/beta hydrolase fold C4901_05860 PF00990 Diguanylate cyclase, GGDEF domain C4901_05860 PF03707 Bacterial signalling protein N terminal repeat C4901_05860 PF00563 EAL domain C4901_05870 PF10414 Sirohaem synthase dimerisation region C4901_05870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C4901_05870 PF14824 Sirohaem biosynthesis protein central C4901_05875 PF02885 Glycosyl transferase family, helical bundle domain C4901_05880 PF00355 Rieske [2Fe-2S] domain C4901_05885 PF18267 Rubredoxin NAD+ reductase C-terminal domain C4901_05885 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_05885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C4901_05885 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C4901_05885 PF04324 BFD-like [2Fe-2S] binding domain C4901_05890 PF01027 Inhibitor of apoptosis-promoting Bax1 C4901_05900 PF00534 Glycosyl transferases group 1 C4901_05900 PF08323 Starch synthase catalytic domain C4901_05910 PF01738 Dienelactone hydrolase family C4901_05915 PF02685 Glucokinase C4901_05920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C4901_05920 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain C4901_05925 PF00342 Phosphoglucose isomerase C4901_05930 PF00483 Nucleotidyl transferase C4901_05940 PF02446 4-alpha-glucanotransferase C4901_05970 PF00072 Response regulator receiver domain C4901_05970 PF00158 Sigma-54 interaction domain C4901_05975 PF11897 Protein of unknown function (DUF3417) C4901_05975 PF00343 Carbohydrate phosphorylase C4901_05980 PF02806 Alpha amylase, C-terminal all-beta domain C4901_05980 PF00128 Alpha amylase, catalytic domain C4901_05980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C4901_06010 PF01590 GAF domain C4901_06010 PF02954 Bacterial regulatory protein, Fis family C4901_06010 PF00158 Sigma-54 interaction domain C4901_06015 PF02954 Bacterial regulatory protein, Fis family C4901_06015 PF00072 Response regulator receiver domain C4901_06015 PF00158 Sigma-54 interaction domain C4901_06035 PF00128 Alpha amylase, catalytic domain C4901_06035 PF02806 Alpha amylase, C-terminal all-beta domain C4901_06035 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C4901_06040 PF00128 Alpha amylase, catalytic domain C4901_06040 PF11896 Domain of unknown function (DUF3416) C4901_06045 PF00128 Alpha amylase, catalytic domain C4901_06045 PF16657 Maltogenic Amylase, C-terminal domain C4901_06055 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C4901_06055 PF00128 Alpha amylase, catalytic domain C4901_06060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C4901_06060 PF11941 Domain of unknown function (DUF3459) C4901_06060 PF00128 Alpha amylase, catalytic domain C4901_06065 PF00128 Alpha amylase, catalytic domain C4901_06090 PF01053 Cys/Met metabolism PLP-dependent enzyme C4901_06120 PF06481 COX Aromatic Rich Motif C4901_06120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C4901_06125 PF00115 Cytochrome C and Quinol oxidase polypeptide I C4901_06130 PF00510 Cytochrome c oxidase subunit III C4901_06155 PF01011 PQQ enzyme repeat C4901_06155 PF13570 PQQ-like domain C4901_06155 PF13360 PQQ-like domain C4901_06165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C4901_06165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C4901_06170 PF02705 K+ potassium transporter C4901_06185 PF00654 Voltage gated chloride channel C4901_06190 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C4901_06190 PF02896 PEP-utilising enzyme, TIM barrel domain C4901_06190 PF00391 PEP-utilising enzyme, mobile domain C4901_06205 PF12867 DinB superfamily C4901_06205 PF03781 Sulfatase-modifying factor enzyme 1 C4901_06220 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C4901_06225 PF00072 Response regulator receiver domain C4901_06225 PF00990 Diguanylate cyclase, GGDEF domain C4901_06230 PF01627 Hpt domain C4901_06230 PF00989 PAS fold C4901_06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_06230 PF00512 His Kinase A (phospho-acceptor) domain C4901_06230 PF00072 Response regulator receiver domain C4901_06230 PF18415 Histidine kinase receptor ArcB trans-membrane domain C4901_06235 PF03069 Acetamidase/Formamidase family C4901_06250 PF01695 IstB-like ATP binding protein C4901_06280 PF07690 Major Facilitator Superfamily C4901_06295 PF00563 EAL domain C4901_06295 PF00990 Diguanylate cyclase, GGDEF domain C4901_06295 PF03707 Bacterial signalling protein N terminal repeat C4901_06305 PF05067 Manganese containing catalase C4901_06310 PF01566 Natural resistance-associated macrophage protein C4901_06350 PF00881 Nitroreductase family C4901_06365 PF01638 HxlR-like helix-turn-helix C4901_06400 PF08240 Alcohol dehydrogenase GroES-like domain C4901_06400 PF13823 Alcohol dehydrogenase GroES-associated C4901_06400 PF00107 Zinc-binding dehydrogenase C4901_06405 PF07929 Plasmid pRiA4b ORF-3-like protein C4901_06410 PF03793 PASTA domain C4901_06410 PF00069 Protein kinase domain C4901_06415 PF13520 Amino acid permease C4901_06420 PF01645 Conserved region in glutamate synthase C4901_06435 PF00120 Glutamine synthetase, catalytic domain C4901_06445 PF01571 Aminomethyltransferase folate-binding domain C4901_06445 PF08669 Glycine cleavage T-protein C-terminal barrel domain C4901_06445 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_06445 PF17806 Sarcosine oxidase A3 domain C4901_06455 PF01266 FAD dependent oxidoreductase C4901_06535 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH C4901_06570 PF00535 Glycosyl transferase family 2 C4901_06575 PF07804 HipA-like C-terminal domain C4901_06575 PF13657 HipA N-terminal domain C4901_06590 PF01381 Helix-turn-helix C4901_06660 PF00005 ABC transporter C4901_06675 PF00534 Glycosyl transferases group 1 C4901_06675 PF13439 Glycosyltransferase Family 4 C4901_06680 PF00534 Glycosyl transferases group 1 C4901_06680 PF13439 Glycosyltransferase Family 4 C4901_06685 PF00534 Glycosyl transferases group 1 C4901_06685 PF13439 Glycosyltransferase Family 4 C4901_06690 PF16363 GDP-mannose 4,6 dehydratase C4901_06695 PF16363 GDP-mannose 4,6 dehydratase C4901_06700 PF08241 Methyltransferase domain C4901_06705 PF13439 Glycosyltransferase Family 4 C4901_06705 PF00534 Glycosyl transferases group 1 C4901_06765 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C4901_06765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C4901_06770 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C4901_06770 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C4901_06775 PF02635 DsrE/DsrF-like family C4901_06780 PF02635 DsrE/DsrF-like family C4901_06790 PF04358 DsrC like protein C4901_06805 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_06805 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C4901_06815 PF13247 4Fe-4S dicluster domain C4901_06825 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C4901_06825 PF07685 CobB/CobQ-like glutamine amidotransferase domain C4901_06830 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_06830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C4901_06840 PF00072 Response regulator receiver domain C4901_06840 PF00196 Bacterial regulatory proteins, luxR family C4901_06845 PF00149 Calcineurin-like phosphoesterase C4901_06875 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system C4901_06900 PF10414 Sirohaem synthase dimerisation region C4901_06900 PF14824 Sirohaem biosynthesis protein central C4901_06900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C4901_06910 PF04002 RadC-like JAB domain C4901_06955 PF11855 Protein of unknown function (DUF3375) C4901_06970 PF13188 PAS domain C4901_06970 PF00512 His Kinase A (phospho-acceptor) domain C4901_06970 PF00072 Response regulator receiver domain C4901_06970 PF08448 PAS fold C4901_06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_06975 PF04349 Periplasmic glucan biosynthesis protein, MdoG C4901_06980 PF04349 Periplasmic glucan biosynthesis protein, MdoG C4901_06990 PF08448 PAS fold C4901_06990 PF00512 His Kinase A (phospho-acceptor) domain C4901_06990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_06990 PF13188 PAS domain C4901_06990 PF00072 Response regulator receiver domain C4901_06995 PF01844 HNH endonuclease C4901_07000 PF00313 'Cold-shock' DNA-binding domain C4901_07005 PF00535 Glycosyl transferase family 2 C4901_07010 PF04349 Periplasmic glucan biosynthesis protein, MdoG C4901_07030 PF00271 Helicase conserved C-terminal domain C4901_07030 PF00270 DEAD/DEAH box helicase C4901_07040 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C4901_07045 PF05230 MASE2 domain C4901_07045 PF00990 Diguanylate cyclase, GGDEF domain C4901_07055 PF02673 Bacitracin resistance protein BacA C4901_07060 PF00890 FAD binding domain C4901_07060 PF02910 Fumarate reductase flavoprotein C-term C4901_07065 PF04542 Sigma-70 region 2 C4901_07065 PF08281 Sigma-70, region 4 C4901_07080 PF13180 PDZ domain C4901_07085 PF06421 GTP-binding protein LepA C-terminus C4901_07085 PF00679 Elongation factor G C-terminus C4901_07085 PF14492 Elongation Factor G, domain II C4901_07085 PF03144 Elongation factor Tu domain 2 C4901_07085 PF00009 Elongation factor Tu GTP binding domain C4901_07090 PF10502 Signal peptidase, peptidase S26 C4901_07100 PF14622 Ribonuclease-III-like C4901_07100 PF00035 Double-stranded RNA binding motif C4901_07105 PF01926 50S ribosome-binding GTPase C4901_07105 PF07650 KH domain C4901_07110 PF11967 Recombination protein O N terminal C4901_07110 PF02565 Recombination protein O C terminal C4901_07115 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C4901_07130 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH C4901_07135 PF01648 4'-phosphopantetheinyl transferase superfamily C4901_07150 PF04362 Bacterial Fe(2+) trafficking C4901_07155 PF01521 Iron-sulphur cluster biosynthesis C4901_07160 PF07478 D-ala D-ala ligase C-terminus C4901_07160 PF01820 D-ala D-ala ligase N-terminus C4901_07185 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain C4901_07185 PF13538 UvrD-like helicase C-terminal domain C4901_07185 PF14490 Helix-hairpin-helix containing domain C4901_07205 PF04542 Sigma-70 region 2 C4901_07205 PF08281 Sigma-70, region 4 C4901_07225 PF02798 Glutathione S-transferase, N-terminal domain C4901_07225 PF00043 Glutathione S-transferase, C-terminal domain C4901_07240 PF00528 Binding-protein-dependent transport system inner membrane component C4901_07245 PF00005 ABC transporter C4901_07260 PF02785 Biotin carboxylase C-terminal domain C4901_07260 PF00289 Biotin carboxylase, N-terminal domain C4901_07260 PF00364 Biotin-requiring enzyme C4901_07260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C4901_07265 PF00999 Sodium/hydrogen exchanger family C4901_07270 PF00723 Glycosyl hydrolases family 15 C4901_07270 PF09137 Glucodextranase, domain N C4901_07280 PF00589 Phage integrase family C4901_07285 PF10412 Type IV secretion-system coupling protein DNA-binding domain C4901_07285 PF12615 F sex factor protein N terminal C4901_07315 PF03389 MobA/MobL family C4901_07315 PF17841 BID domain of Bartonella effector protein (Bep) C4901_07315 PF01443 Viral (Superfamily 1) RNA helicase C4901_07360 PF15723 Motility quorum-sensing regulator, toxin of MqsA C4901_07385 PF00589 Phage integrase family C4901_07415 PF03814 Potassium-transporting ATPase A subunit C4901_07445 PF03412 Peptidase C39 family C4901_07445 PF00664 ABC transporter transmembrane region C4901_07445 PF00005 ABC transporter C4901_07465 PF01695 IstB-like ATP binding protein C4901_07470 PF00893 Small Multidrug Resistance protein C4901_07480 PF01381 Helix-turn-helix C4901_07530 PF00535 Glycosyl transferase family 2 C4901_07535 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C4901_07535 PF02896 PEP-utilising enzyme, TIM barrel domain C4901_07535 PF00391 PEP-utilising enzyme, mobile domain C4901_07540 PF09383 NIL domain C4901_07540 PF00005 ABC transporter C4901_07610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C4901_07620 PF00890 FAD binding domain C4901_07625 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit C4901_07625 PF13187 4Fe-4S dicluster domain C4901_07650 PF00749 tRNA synthetases class I (E and Q), catalytic domain C4901_07660 PF13361 UvrD-like helicase C-terminal domain C4901_07660 PF00580 UvrD/REP helicase N-terminal domain C4901_07660 PF12705 PD-(D/E)XK nuclease superfamily C4901_07685 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase C4901_07690 PF13977 BetI-type transcriptional repressor, C-terminal C4901_07690 PF00440 Bacterial regulatory proteins, tetR family C4901_07695 PF02678 Pirin C4901_07695 PF17954 Quercetinase C-terminal cupin domain C4901_07700 PF03358 NADPH-dependent FMN reductase C4901_07705 PF01638 HxlR-like helix-turn-helix C4901_07710 PF02646 RmuC family C4901_07715 PF00005 ABC transporter C4901_07715 PF12848 ABC transporter C4901_07720 PF01522 Polysaccharide deacetylase C4901_07735 PF00550 Phosphopantetheine attachment site C4901_07755 PF02801 Beta-ketoacyl synthase, C-terminal domain C4901_07755 PF00109 Beta-ketoacyl synthase, N-terminal domain C4901_07770 PF00107 Zinc-binding dehydrogenase C4901_07770 PF08240 Alcohol dehydrogenase GroES-like domain C4901_07775 PF03472 Autoinducer binding domain C4901_07775 PF00196 Bacterial regulatory proteins, luxR family C4901_07795 PF00970 Oxidoreductase FAD-binding domain C4901_07795 PF00175 Oxidoreductase NAD-binding domain C4901_07795 PF00111 2Fe-2S iron-sulfur cluster binding domain C4901_07800 PF01152 Bacterial-like globin C4901_07805 PF02082 Transcriptional regulator C4901_07815 PF01425 Amidase C4901_07835 PF01565 FAD binding domain C4901_07835 PF02913 FAD linked oxidases, C-terminal domain C4901_07840 PF13180 PDZ domain C4901_07845 PF04286 Protein of unknown function (DUF445) C4901_07850 PF00990 Diguanylate cyclase, GGDEF domain C4901_07850 PF00563 EAL domain C4901_07850 PF03707 Bacterial signalling protein N terminal repeat C4901_07855 PF01810 LysE type translocator C4901_07860 PF03466 LysR substrate binding domain C4901_07860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_07865 PF01510 N-acetylmuramoyl-L-alanine amidase C4901_07870 PF17113 Regulatory signalling modulator protein AmpE C4901_07870 PF03186 CobD/Cbib protein C4901_07880 PF00293 NUDIX domain C4901_07895 PF00873 AcrB/AcrD/AcrF family C4901_07900 PF00873 AcrB/AcrD/AcrF family C4901_07905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C4901_07910 PF02321 Outer membrane efflux protein C4901_07915 PF00689 Cation transporting ATPase, C-terminus C4901_07915 PF00690 Cation transporter/ATPase, N-terminus C4901_07920 PF00582 Universal stress protein family C4901_07935 PF03707 Bacterial signalling protein N terminal repeat C4901_07935 PF00990 Diguanylate cyclase, GGDEF domain C4901_07935 PF00563 EAL domain C4901_07940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C4901_07945 PF14489 QueF-like protein C4901_07950 PF02463 RecF/RecN/SMC N terminal domain C4901_07950 PF06470 SMC proteins Flexible Hinge Domain C4901_07955 PF04354 ZipA, C-terminal FtsZ-binding domain C4901_07960 PF12826 Helix-hairpin-helix motif C4901_07960 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C4901_07960 PF03120 NAD-dependent DNA ligase OB-fold domain C4901_07960 PF00533 BRCA1 C Terminus (BRCT) domain C4901_07960 PF01653 NAD-dependent DNA ligase adenylation domain C4901_07975 PF03795 YCII-related domain C4901_07985 PF02811 PHP domain C4901_07990 PF01300 Telomere recombination C4901_07995 PF02163 Peptidase family M50 C4901_08000 PF00579 tRNA synthetases class I (W and Y) C4901_08005 PF02616 Segregation and condensation protein ScpA C4901_08015 PF00849 RNA pseudouridylate synthase C4901_08015 PF01479 S4 domain C4901_08025 PF04333 MlaA lipoprotein C4901_08030 PF00886 Ribosomal protein S16 C4901_08035 PF05239 PRC-barrel domain C4901_08035 PF01782 RimM N-terminal domain C4901_08040 PF01746 tRNA (Guanine-1)-methyltransferase C4901_08045 PF01245 Ribosomal protein L19 C4901_08050 PF02899 Phage integrase, N-terminal SAM-like domain C4901_08050 PF00589 Phage integrase family C4901_08060 PF01734 Patatin-like phospholipase C4901_08065 PF12792 CSS motif domain associated with EAL C4901_08065 PF00563 EAL domain C4901_08075 PF00580 UvrD/REP helicase N-terminal domain C4901_08075 PF13361 UvrD-like helicase C-terminal domain C4901_08080 PF00982 Glycosyltransferase family 20 C4901_08085 PF00924 Mechanosensitive ion channel C4901_08090 PF03633 Glycosyl hydrolase family 65, C-terminal domain C4901_08090 PF03632 Glycosyl hydrolase family 65 central catalytic domain C4901_08090 PF02358 Trehalose-phosphatase C4901_08090 PF03636 Glycosyl hydrolase family 65, N-terminal domain C4901_08095 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family C4901_08100 PF00285 Citrate synthase, C-terminal domain C4901_08105 PF00793 DAHP synthetase I family C4901_08105 PF01817 Chorismate mutase type II C4901_08110 PF00313 'Cold-shock' DNA-binding domain C4901_08115 PF09335 SNARE associated Golgi protein C4901_08145 PF01385 Probable transposase C4901_08145 PF12323 Helix-turn-helix domain C4901_08145 PF07282 Putative transposase DNA-binding domain C4901_08155 PF01029 NusB family C4901_08155 PF01189 16S rRNA methyltransferase RsmB/F C4901_08160 PF00795 Carbon-nitrogen hydrolase C4901_08165 PF04371 Porphyromonas-type peptidyl-arginine deiminase C4901_08200 PF01180 Dihydroorotate dehydrogenase C4901_08205 PF01479 S4 domain C4901_08205 PF00849 RNA pseudouridylate synthase C4901_08210 PF00920 Dehydratase family C4901_08220 PF03372 Endonuclease/Exonuclease/phosphatase family C4901_08225 PF13091 PLD-like domain C4901_08245 PF00206 Lyase C4901_08245 PF08328 Adenylosuccinate lyase C-terminal C4901_08260 PF00293 NUDIX domain C4901_08265 PF00849 RNA pseudouridylate synthase C4901_08270 PF00180 Isocitrate/isopropylmalate dehydrogenase C4901_08285 PF00873 AcrB/AcrD/AcrF family C4901_08290 PF00313 'Cold-shock' DNA-binding domain C4901_08295 PF02617 ATP-dependent Clp protease adaptor protein ClpS C4901_08300 PF10431 C-terminal, D2-small domain, of ClpB protein C4901_08300 PF02861 Clp amino terminal domain, pathogenicity island component C4901_08300 PF17871 AAA lid domain C4901_08300 PF07724 AAA domain (Cdc48 subfamily) C4901_08300 PF00004 ATPase family associated with various cellular activities (AAA) C4901_08310 PF01176 Translation initiation factor 1A / IF-1 C4901_08315 PF04377 Arginine-tRNA-protein transferase, C terminus C4901_08315 PF04376 Arginine-tRNA-protein transferase, N terminus C4901_08320 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C4901_08330 PF02321 Outer membrane efflux protein C4901_08340 PF08442 ATP-grasp domain C4901_08340 PF00549 CoA-ligase C4901_08345 PF00549 CoA-ligase C4901_08345 PF02629 CoA binding domain C4901_08350 PF00549 CoA-ligase C4901_08350 PF02629 CoA binding domain C4901_08355 PF00795 Carbon-nitrogen hydrolase C4901_08355 PF02540 NAD synthase C4901_08360 PF13525 Outer membrane lipoprotein C4901_08365 PF01479 S4 domain C4901_08365 PF00849 RNA pseudouridylate synthase C4901_08375 PF01965 DJ-1/PfpI family C4901_08380 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C4901_08380 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C4901_08385 PF12867 DinB superfamily C4901_08385 PF03781 Sulfatase-modifying factor enzyme 1 C4901_08395 PF10017 Histidine-specific methyltransferase, SAM-dependent C4901_08405 PF01914 MarC family integral membrane protein C4901_08410 PF00004 ATPase family associated with various cellular activities (AAA) C4901_08410 PF10431 C-terminal, D2-small domain, of ClpB protein C4901_08410 PF07724 AAA domain (Cdc48 subfamily) C4901_08410 PF17871 AAA lid domain C4901_08410 PF02861 Clp amino terminal domain, pathogenicity island component C4901_08415 PF03061 Thioesterase superfamily C4901_08425 PF01264 Chorismate synthase C4901_08430 PF12832 MFS_1 like family C4901_08440 PF00330 Aconitase family (aconitate hydratase) C4901_08445 PF00694 Aconitase C-terminal domain C4901_08450 PF00180 Isocitrate/isopropylmalate dehydrogenase C4901_08455 PF01118 Semialdehyde dehydrogenase, NAD binding domain C4901_08455 PF02774 Semialdehyde dehydrogenase, dimerisation domain C4901_08465 PF00186 Dihydrofolate reductase C4901_08470 PF00303 Thymidylate synthase C4901_08485 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C4901_08485 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C4901_08505 PF00589 Phage integrase family C4901_08525 PF01548 Transposase C4901_08525 PF02371 Transposase IS116/IS110/IS902 family C4901_08540 PF00891 O-methyltransferase domain C4901_08545 PF01131 DNA topoisomerase C4901_08545 PF01751 Toprim domain C4901_08575 PF00905 Penicillin binding protein transpeptidase domain C4901_08575 PF03717 Penicillin-binding Protein dimerisation domain C4901_08585 PF03466 LysR substrate binding domain C4901_08585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_08595 PF00563 EAL domain C4901_08595 PF00990 Diguanylate cyclase, GGDEF domain C4901_08595 PF13426 PAS domain C4901_08600 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C4901_08605 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C4901_08610 PF00361 Proton-conducting membrane transporter C4901_08620 PF00146 NADH dehydrogenase C4901_08625 PF00361 Proton-conducting membrane transporter C4901_08665 PF12221 Bacterial membrane protein N terminal C4901_08665 PF01145 SPFH domain / Band 7 family C4901_08675 PF13393 Histidyl-tRNA synthetase C4901_08680 PF00709 Adenylosuccinate synthetase C4901_08690 PF08461 Ribonuclease R winged-helix domain C4901_08690 PF08206 Ribonuclease B OB domain C4901_08690 PF17876 Cold shock domain C4901_08690 PF00773 RNB domain C4901_08690 PF00575 S1 RNA binding domain C4901_08695 PF00588 SpoU rRNA Methylase family C4901_08695 PF08032 RNA 2'-O ribose methyltransferase substrate binding C4901_08700 PF01250 Ribosomal protein S6 C4901_08705 PF01084 Ribosomal protein S18 C4901_08710 PF03948 Ribosomal protein L9, C-terminal domain C4901_08710 PF01281 Ribosomal protein L9, N-terminal domain C4901_08715 PF03796 DnaB-like helicase C terminal domain C4901_08715 PF00772 DnaB-like helicase N terminal domain C4901_08720 PF01168 Alanine racemase, N-terminal domain C4901_08720 PF00842 Alanine racemase, C-terminal domain C4901_08725 PF18073 Rubredoxin metal binding domain C4901_08730 PF08448 PAS fold C4901_08730 PF00563 EAL domain C4901_08730 PF00990 Diguanylate cyclase, GGDEF domain C4901_08730 PF08447 PAS fold C4901_08735 PF00528 Binding-protein-dependent transport system inner membrane component C4901_08740 PF00528 Binding-protein-dependent transport system inner membrane component C4901_08745 PF12849 PBP superfamily domain C4901_08760 PF03601 Conserved hypothetical protein 698 C4901_08765 PF01226 Formate/nitrite transporter C4901_08770 PF13378 Enolase C-terminal domain-like C4901_08770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C4901_08775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C4901_08775 PF00205 Thiamine pyrophosphate enzyme, central domain C4901_08775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C4901_08785 PF00155 Aminotransferase class I and II C4901_08790 PF02545 Maf-like protein C4901_08795 PF00682 HMGL-like C4901_08795 PF00364 Biotin-requiring enzyme C4901_08795 PF02436 Conserved carboxylase domain C4901_08800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C4901_08800 PF00289 Biotin carboxylase, N-terminal domain C4901_08800 PF02785 Biotin carboxylase C-terminal domain C4901_08815 PF01783 Ribosomal L32p protein family C4901_08820 PF02504 Fatty acid synthesis protein C4901_08825 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C4901_08825 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C4901_08830 PF00698 Acyl transferase domain C4901_08840 PF00550 Phosphopantetheine attachment site C4901_08845 PF00109 Beta-ketoacyl synthase, N-terminal domain C4901_08845 PF02801 Beta-ketoacyl synthase, C-terminal domain C4901_08850 PF00425 chorismate binding enzyme C4901_08850 PF04715 Anthranilate synthase component I, N terminal region C4901_08855 PF01063 Amino-transferase class IV C4901_08860 PF02618 YceG-like family C4901_08865 PF02223 Thymidylate kinase C4901_08870 PF09115 DNA polymerase III, delta subunit, C terminal C4901_08880 PF01026 TatD related DNase C4901_08915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C4901_08915 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_08915 PF00403 Heavy-metal-associated domain C4901_08920 PF02374 Anion-transporting ATPase C4901_08925 PF06953 Arsenical resistance operon trans-acting repressor ArsD C4901_08930 PF01451 Low molecular weight phosphotyrosine protein phosphatase C4901_08935 PF02567 Phenazine biosynthesis-like protein C4901_08960 PF16861 Carbamoyltransferase C-terminus C4901_08960 PF02543 Carbamoyltransferase N-terminus C4901_08965 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C4901_08970 PF08645 Polynucleotide kinase 3 phosphatase C4901_08980 PF00534 Glycosyl transferases group 1 C4901_08980 PF13439 Glycosyltransferase Family 4 C4901_08985 PF01565 FAD binding domain C4901_08985 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C4901_09000 PF05175 Methyltransferase small domain C4901_09000 PF17827 PrmC N-terminal domain C4901_09005 PF01966 HD domain C4901_09010 PF01255 Putative undecaprenyl diphosphate synthase C4901_09070 PF00114 Pilin (bacterial filament) C4901_09070 PF07963 Prokaryotic N-terminal methylation motif C4901_09190 PF12008 Type I restriction and modification enzyme - subunit R C terminal C4901_09190 PF18766 SWI2/SNF2 ATPase C4901_09190 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C4901_09215 PF01420 Type I restriction modification DNA specificity domain C4901_09230 PF02384 N-6 DNA Methylase C4901_09230 PF12161 HsdM N-terminal domain C4901_09260 PF13086 AAA domain C4901_09260 PF13087 AAA domain C4901_09260 PF13195 Protein of unknown function (DUF4011) C4901_09355 PF01936 NYN domain C4901_09390 PF00005 ABC transporter C4901_09390 PF13732 Domain of unknown function (DUF4162) C4901_09405 PF01066 CDP-alcohol phosphatidyltransferase C4901_09410 PF08459 UvrC Helix-hairpin-helix N-terminal C4901_09410 PF02151 UvrB/uvrC motif C4901_09410 PF01541 GIY-YIG catalytic domain C4901_09415 PF03167 Uracil DNA glycosylase superfamily C4901_09420 PF00933 Glycosyl hydrolase family 3 N terminal domain C4901_09425 PF17969 L,D-transpeptidase C-terminal domain C4901_09425 PF03734 L,D-transpeptidase catalytic domain C4901_09430 PF05958 tRNA (Uracil-5-)-methyltransferase C4901_09440 PF00291 Pyridoxal-phosphate dependent enzyme C4901_09445 PF01368 DHH family C4901_09445 PF17768 RecJ OB domain C4901_09445 PF02272 DHHA1 domain C4901_09450 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase C4901_09450 PF01676 Metalloenzyme superfamily C4901_09455 PF00291 Pyridoxal-phosphate dependent enzyme C4901_09460 PF03447 Homoserine dehydrogenase, NAD binding domain C4901_09460 PF00742 Homoserine dehydrogenase C4901_09460 PF01842 ACT domain C4901_09465 PF00155 Aminotransferase class I and II C4901_09475 PF00140 Sigma-70 factor, region 1.2 C4901_09475 PF04545 Sigma-70, region 4 C4901_09475 PF04539 Sigma-70 region 3 C4901_09475 PF04542 Sigma-70 region 2 C4901_09480 PF01551 Peptidase family M23 C4901_09480 PF01476 LysM domain C4901_09490 PF01975 Survival protein SurE C4901_09495 PF01343 Peptidase family S49 C4901_09505 PF13419 Haloacid dehalogenase-like hydrolase C4901_09510 PF00849 RNA pseudouridylate synthase C4901_09510 PF01479 S4 domain C4901_09525 PF01451 Low molecular weight phosphotyrosine protein phosphatase C4901_09530 PF01451 Low molecular weight phosphotyrosine protein phosphatase C4901_09540 PF02348 Cytidylyltransferase C4901_09545 PF03966 Trm112p-like protein C4901_09550 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C4901_09560 PF00664 ABC transporter transmembrane region C4901_09560 PF00005 ABC transporter C4901_09570 PF01618 MotA/TolQ/ExbB proton channel family C4901_09575 PF00005 ABC transporter C4901_09580 PF12704 MacB-like periplasmic core domain C4901_09580 PF02687 FtsX-like permease family C4901_09590 PF01168 Alanine racemase, N-terminal domain C4901_09600 PF00155 Aminotransferase class I and II C4901_09605 PF00132 Bacterial transferase hexapeptide (six repeats) C4901_09605 PF14602 Hexapeptide repeat of succinyl-transferase C4901_09605 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C4901_09610 PF07687 Peptidase dimerisation domain C4901_09610 PF01546 Peptidase family M20/M25/M40 C4901_09615 PF12401 Protein of unknown function (DUF2662) C4901_09615 PF00498 FHA domain C4901_09630 PF00072 Response regulator receiver domain C4901_09630 PF00486 Transcriptional regulatory protein, C terminal C4901_09635 PF00672 HAMP domain C4901_09635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_09635 PF00512 His Kinase A (phospho-acceptor) domain C4901_09645 PF00459 Inositol monophosphatase family C4901_09665 PF12323 Helix-turn-helix domain C4901_09665 PF01385 Probable transposase C4901_09665 PF07282 Putative transposase DNA-binding domain C4901_09670 PF08241 Methyltransferase domain C4901_09675 PF01557 Fumarylacetoacetate (FAA) hydrolase family C4901_09680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C4901_09680 PF01568 Molydopterin dinucleotide binding domain C4901_09680 PF00384 Molybdopterin oxidoreductase C4901_09685 PF13247 4Fe-4S dicluster domain C4901_09685 PF12800 4Fe-4S binding domain C4901_09690 PF04976 DMSO reductase anchor subunit (DmsC) C4901_09695 PF01967 MoaC family C4901_09700 PF06463 Molybdenum Cofactor Synthesis C C4901_09700 PF04055 Radical SAM superfamily C4901_09705 PF02597 ThiS family C4901_09710 PF02391 MoaE protein C4901_09715 PF12848 ABC transporter C4901_09715 PF00005 ABC transporter C4901_09730 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C4901_09730 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C4901_09760 PF00004 ATPase family associated with various cellular activities (AAA) C4901_09760 PF05362 Lon protease (S16) C-terminal proteolytic domain C4901_09760 PF02190 ATP-dependent protease La (LON) substrate-binding domain C4901_09815 PF13280 WYL domain C4901_09815 PF08279 HTH domain C4901_09820 PF00723 Glycosyl hydrolases family 15 C4901_09820 PF09137 Glucodextranase, domain N C4901_09840 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_09870 PF00529 HlyD membrane-fusion protein of T1SS C4901_09870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C4901_09875 PF02321 Outer membrane efflux protein C4901_09880 PF07690 Major Facilitator Superfamily C4901_09885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_09885 PF03466 LysR substrate binding domain C4901_09895 PF00403 Heavy-metal-associated domain C4901_09900 PF00403 Heavy-metal-associated domain C4901_09905 PF09278 MerR, DNA binding C4901_09905 PF00376 MerR family regulatory protein C4901_09910 PF13098 Thioredoxin-like domain C4901_09930 PF08534 Redoxin C4901_09930 PF00462 Glutaredoxin C4901_09935 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_09935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C4901_09940 PF01636 Phosphotransferase enzyme family C4901_09945 PF04293 SpoVR like protein C4901_09950 PF04285 Protein of unknown function (DUF444) C4901_09955 PF06798 PrkA serine protein kinase C-terminal domain C4901_09955 PF08298 PrkA AAA domain C4901_09965 PF07690 Major Facilitator Superfamily C4901_09980 PF05199 GMC oxidoreductase C4901_09980 PF00732 GMC oxidoreductase C4901_09990 PF00892 EamA-like transporter family C4901_10015 PF05726 Pirin C-terminal cupin domain C4901_10015 PF02678 Pirin C4901_10030 PF08406 CbbQ/NirQ/NorQ C-terminal C4901_10030 PF07728 AAA domain (dynein-related subfamily) C4901_10040 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) C4901_10050 PF00361 Proton-conducting membrane transporter C4901_10050 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C4901_10050 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus C4901_10075 PF00210 Ferritin-like domain C4901_10115 PF00101 Ribulose bisphosphate carboxylase, small chain C4901_10120 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain C4901_10120 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain C4901_10125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_10125 PF03466 LysR substrate binding domain C4901_10130 PF13570 PQQ-like domain C4901_10130 PF13360 PQQ-like domain C4901_10130 PF01011 PQQ enzyme repeat C4901_10140 PF07732 Multicopper oxidase C4901_10150 PF01926 50S ribosome-binding GTPase C4901_10150 PF13167 GTP-binding GTPase N-terminal C4901_10150 PF16360 GTP-binding GTPase Middle Region C4901_10155 PF17209 Hfq protein C4901_10165 PF01336 OB-fold nucleic acid binding domain C4901_10165 PF00152 tRNA synthetases class II (D, K and N) C4901_10180 PF13089 Polyphosphate kinase N-terminal domain C4901_10180 PF17941 Polyphosphate kinase C-terminal domain 1 C4901_10180 PF13090 Polyphosphate kinase C-terminal domain 2 C4901_10180 PF02503 Polyphosphate kinase middle domain C4901_10190 PF02541 Ppx/GppA phosphatase family C4901_10210 PF00551 Formyl transferase C4901_10275 PF07690 Major Facilitator Superfamily C4901_10300 PF02403 Seryl-tRNA synthetase N-terminal domain C4901_10300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C4901_10305 PF03937 Flavinator of succinate dehydrogenase C4901_10310 PF13085 2Fe-2S iron-sulfur cluster binding domain C4901_10315 PF02910 Fumarate reductase flavoprotein C-term C4901_10315 PF00890 FAD binding domain C4901_10330 PF01571 Aminomethyltransferase folate-binding domain C4901_10335 PF04977 Septum formation initiator C4901_10340 PF03952 Enolase, N-terminal domain C4901_10340 PF00113 Enolase, C-terminal TIM barrel domain C4901_10345 PF00793 DAHP synthetase I family C4901_10350 PF06418 CTP synthase N-terminus C4901_10350 PF00117 Glutamine amidotransferase class-I C4901_10355 PF01171 PP-loop family C4901_10355 PF11734 TilS substrate C-terminal domain C4901_10355 PF09179 TilS substrate binding domain C4901_10360 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C4901_10365 PF07733 Bacterial DNA polymerase III alpha NTPase domain C4901_10365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C4901_10365 PF01336 OB-fold nucleic acid binding domain C4901_10365 PF02811 PHP domain C4901_10365 PF14579 Helix-hairpin-helix motif C4901_10370 PF01351 Ribonuclease HII C4901_10375 PF02684 Lipid-A-disaccharide synthetase C4901_10380 PF00132 Bacterial transferase hexapeptide (six repeats) C4901_10380 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C4901_10385 PF07977 FabA-like domain C4901_10390 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C4901_10390 PF00132 Bacterial transferase hexapeptide (six repeats) C4901_10395 PF07244 Surface antigen variable number repeat C4901_10395 PF01103 Surface antigen C4901_10400 PF13180 PDZ domain C4901_10400 PF17820 PDZ domain C4901_10400 PF02163 Peptidase family M50 C4901_10405 PF13288 DXP reductoisomerase C-terminal domain C4901_10405 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C4901_10405 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C4901_10415 PF01255 Putative undecaprenyl diphosphate synthase C4901_10420 PF01765 Ribosome recycling factor C4901_10425 PF00696 Amino acid kinase family C4901_10430 PF00889 Elongation factor TS C4901_10435 PF00318 Ribosomal protein S2 C4901_10440 PF00557 Metallopeptidase family M24 C4901_10445 PF01909 Nucleotidyltransferase domain C4901_10445 PF01842 ACT domain C4901_10445 PF08335 GlnD PII-uridylyltransferase C4901_10445 PF01966 HD domain C4901_10490 PF00665 Integrase core domain C4901_10510 PF13520 Amino acid permease C4901_10515 PF11741 AMIN domain C4901_10515 PF01520 N-acetylmuramoyl-L-alanine amidase C4901_10520 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C4901_10525 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C4901_10530 PF03853 YjeF-related protein N-terminus C4901_10530 PF01256 Carbohydrate kinase C4901_10535 PF00929 Exonuclease C4901_10540 PF01329 Pterin 4 alpha carbinolamine dehydratase C4901_10545 PF02132 RecR protein C4901_10545 PF13662 Toprim domain C4901_10550 PF02575 YbaB/EbfC DNA-binding family C4901_10565 PF07885 Ion channel C4901_10565 PF17655 Inward rectifier potassium channel C-terminal domain C4901_10585 PF05532 CsbD-like C4901_10610 PF00072 Response regulator receiver domain C4901_10610 PF00196 Bacterial regulatory proteins, luxR family C4901_10630 PF00990 Diguanylate cyclase, GGDEF domain C4901_10630 PF13185 GAF domain C4901_10630 PF00563 EAL domain C4901_10635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_10635 PF00512 His Kinase A (phospho-acceptor) domain C4901_10650 PF00497 Bacterial extracellular solute-binding proteins, family 3 C4901_10650 PF01464 Transglycosylase SLT domain C4901_10655 PF14437 MafB19-like deaminase C4901_10660 PF07690 Major Facilitator Superfamily C4901_10665 PF07690 Major Facilitator Superfamily C4901_10675 PF00561 alpha/beta hydrolase fold C4901_10690 PF00127 Copper binding proteins, plastocyanin/azurin family C4901_10695 PF01040 UbiA prenyltransferase family C4901_10710 PF00115 Cytochrome C and Quinol oxidase polypeptide I C4901_10715 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C4901_10725 PF00034 Cytochrome c C4901_10730 PF00034 Cytochrome c C4901_10740 PF07516 SecA Wing and Scaffold domain C4901_10740 PF01043 SecA preprotein cross-linking domain C4901_10740 PF07517 SecA DEAD-like domain C4901_10740 PF02810 SEC-C motif C4901_10755 PF04986 Putative transposase C4901_10755 PF14319 Transposase zinc-binding domain C4901_10760 PF00589 Phage integrase family C4901_10760 PF13495 Phage integrase, N-terminal SAM-like domain C4901_10765 PF02540 NAD synthase C4901_10765 PF00958 GMP synthase C terminal domain C4901_10765 PF00117 Glutamine amidotransferase class-I C4901_10770 PF00478 IMP dehydrogenase / GMP reductase domain C4901_10770 PF00571 CBS domain C4901_10780 PF13742 OB-fold nucleic acid binding domain C4901_10780 PF02601 Exonuclease VII, large subunit C4901_10780 PF13742 OB-fold nucleic acid binding domain C4901_10780 PF02601 Exonuclease VII, large subunit C4901_10785 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C4901_10785 PF01926 50S ribosome-binding GTPase C4901_10800 PF13393 Histidyl-tRNA synthetase C4901_10800 PF03129 Anticodon binding domain C4901_10805 PF04551 GcpE protein C4901_10820 PF04055 Radical SAM superfamily C4901_10825 PF00334 Nucleoside diphosphate kinase C4901_10830 PF04384 Iron-sulphur cluster assembly C4901_10835 PF00111 2Fe-2S iron-sulfur cluster binding domain C4901_10840 PF00012 Hsp70 protein C4901_10845 PF07743 HSCB C-terminal oligomerisation domain C4901_10850 PF01521 Iron-sulphur cluster biosynthesis C4901_10855 PF01592 NifU-like N terminal domain C4901_10860 PF00266 Aminotransferase class-V C4901_10865 PF02082 Transcriptional regulator C4901_10870 PF00132 Bacterial transferase hexapeptide (six repeats) C4901_10875 PF00588 SpoU rRNA Methylase family C4901_10880 PF00459 Inositol monophosphatase family C4901_10890 PF11953 Domain of unknown function (DUF3470) C4901_10890 PF00037 4Fe-4S binding domain C4901_10895 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ C4901_10900 PF02978 Signal peptide binding domain C4901_10900 PF02881 SRP54-type protein, helical bundle domain C4901_10900 PF00448 SRP54-type protein, GTPase domain C4901_10905 PF01578 Cytochrome C assembly protein C4901_10910 PF01595 Cyclin M transmembrane N-terminal domain C4901_10910 PF03471 Transporter associated domain C4901_10910 PF00571 CBS domain C4901_10915 PF00488 MutS domain V C4901_10915 PF01713 Smr domain C4901_10920 PF00814 Glycoprotease family C4901_10925 PF04321 RmlD substrate binding domain C4901_10930 PF00248 Aldo/keto reductase family C4901_10945 PF00005 ABC transporter C4901_10945 PF06472 ABC transporter transmembrane region 2 C4901_10960 PF00589 Phage integrase family C4901_10975 PF10544 T5orf172 domain C4901_11030 PF08751 TrwC relaxase C4901_11030 PF18272 single-stranded DNA binding TraI N-terminal subdomain C4901_11030 PF07057 DNA helicase TraI C4901_11030 PF18340 DNA relaxase TraI 2B/2B-like domain C4901_11050 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA C4901_11055 PF15723 Motility quorum-sensing regulator, toxin of MqsA C4901_11085 PF01348 Type II intron maturase C4901_11085 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C4901_11100 PF03050 Transposase IS66 family C4901_11100 PF13007 Transposase C of IS166 homeodomain C4901_11100 PF13817 IS66 C-terminal element C4901_11100 PF13005 zinc-finger binding domain of transposase IS66 C4901_11105 PF00589 Phage integrase family C4901_11125 PF13195 Protein of unknown function (DUF4011) C4901_11125 PF13086 AAA domain C4901_11125 PF13087 AAA domain C4901_11205 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH C4901_11210 PF00589 Phage integrase family C4901_11275 PF02599 Global regulator protein family C4901_11280 PF13840 ACT domain C4901_11280 PF00696 Amino acid kinase family C4901_11280 PF01842 ACT domain C4901_11285 PF01411 tRNA synthetases class II (A) C4901_11285 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C4901_11285 PF02272 DHHA1 domain C4901_11290 PF02631 RecX family C4901_11295 PF00154 recA bacterial DNA recombination protein C4901_11300 PF02464 Competence-damaged protein C4901_11305 PF04608 Phosphatidylglycerophosphatase A C4901_11310 PF02769 AIR synthase related protein, C-terminal domain C4901_11310 PF00586 AIR synthase related protein, N-terminal domain C4901_11315 PF01029 NusB family C4901_11320 PF00885 6,7-dimethyl-8-ribityllumazine synthase C4901_11325 PF00925 GTP cyclohydrolase II C4901_11325 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C4901_11330 PF00069 Protein kinase domain C4901_11330 PF03793 PASTA domain C4901_11340 PF00677 Lumazine binding domain C4901_11345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C4901_11345 PF01872 RibD C-terminal domain C4901_11350 PF03477 ATP cone domain C4901_11355 PF00464 Serine hydroxymethyltransferase C4901_11360 PF01814 Hemerythrin HHE cation binding domain C4901_11370 PF02355 Protein export membrane protein C4901_11370 PF07549 SecD/SecF GG Motif C4901_11375 PF07549 SecD/SecF GG Motif C4901_11375 PF13721 SecD export protein N-terminal TM region C4901_11375 PF02355 Protein export membrane protein C4901_11380 PF02699 Preprotein translocase subunit C4901_11385 PF01702 Queuine tRNA-ribosyltransferase C4901_11390 PF00072 Response regulator receiver domain C4901_11390 PF13188 PAS domain C4901_11390 PF08448 PAS fold C4901_11390 PF00512 His Kinase A (phospho-acceptor) domain C4901_11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_11395 PF02547 Queuosine biosynthesis protein C4901_11430 PF00589 Phage integrase family C4901_11460 PF10544 T5orf172 domain C4901_11540 PF08751 TrwC relaxase C4901_11540 PF07057 DNA helicase TraI C4901_11540 PF18272 single-stranded DNA binding TraI N-terminal subdomain C4901_11540 PF18340 DNA relaxase TraI 2B/2B-like domain C4901_11630 PF17151 Periplasmic sensor domain C4901_11630 PF00990 Diguanylate cyclase, GGDEF domain C4901_11635 PF08448 PAS fold C4901_11635 PF08447 PAS fold C4901_11635 PF00990 Diguanylate cyclase, GGDEF domain C4901_11635 PF00563 EAL domain C4901_11715 PF02261 Aspartate decarboxylase C4901_11720 PF02569 Pantoate-beta-alanine ligase C4901_11725 PF02548 Ketopantoate hydroxymethyltransferase C4901_11735 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C4901_11740 PF12626 Polymerase A arginine-rich C-terminus C4901_11740 PF12627 Probable RNA and SrmB- binding site of polymerase A C4901_11740 PF01743 Poly A polymerase head domain C4901_11750 PF00085 Thioredoxin C4901_11760 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C4901_11760 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C4901_11760 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C4901_11765 PF01370 NAD dependent epimerase/dehydratase family C4901_11780 PF00534 Glycosyl transferases group 1 C4901_11780 PF13439 Glycosyltransferase Family 4 C4901_11790 PF00535 Glycosyl transferase family 2 C4901_11795 PF13439 Glycosyltransferase Family 4 C4901_11795 PF00534 Glycosyl transferases group 1 C4901_11800 PF12464 Maltose acetyltransferase C4901_11800 PF14602 Hexapeptide repeat of succinyl-transferase C4901_11815 PF00132 Bacterial transferase hexapeptide (six repeats) C4901_11815 PF12804 MobA-like NTP transferase domain C4901_11815 PF14602 Hexapeptide repeat of succinyl-transferase C4901_11820 PF02540 NAD synthase C4901_11825 PF00550 Phosphopantetheine attachment site C4901_11830 PF13193 AMP-binding enzyme C-terminal domain C4901_11830 PF00501 AMP-binding enzyme C4901_11835 PF00733 Asparagine synthase C4901_11835 PF13537 Glutamine amidotransferase domain C4901_11840 PF13401 AAA domain C4901_11840 PF01471 Putative peptidoglycan binding domain C4901_11865 PF02397 Bacterial sugar transferase C4901_11875 PF16193 AAA C-terminal domain C4901_11875 PF12002 MgsA AAA+ ATPase C terminal C4901_11875 PF00004 ATPase family associated with various cellular activities (AAA) C4901_11880 PF03548 Outer membrane lipoprotein carrier protein LolA C4901_11885 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C4901_11885 PF01580 FtsK/SpoIIIE family C4901_11885 PF17854 FtsK alpha domain C4901_11885 PF09397 Ftsk gamma domain C4901_11890 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C4901_11890 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C4901_11895 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_11905 PF02542 YgbB family C4901_11910 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C4901_11920 PF00270 DEAD/DEAH box helicase C4901_11920 PF00271 Helicase conserved C-terminal domain C4901_11920 PF03461 TRCF domain C4901_11920 PF17757 UvrB interaction domain C4901_11920 PF02559 CarD-like/TRCF domain C4901_11930 PF01327 Polypeptide deformylase C4901_11940 PF01048 Phosphorylase superfamily C4901_11955 PF00483 Nucleotidyl transferase C4901_11965 PF00106 short chain dehydrogenase C4901_11975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_11975 PF03466 LysR substrate binding domain C4901_11980 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain C4901_11980 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain C4901_11985 PF07728 AAA domain (dynein-related subfamily) C4901_11985 PF08406 CbbQ/NirQ/NorQ C-terminal C4901_11995 PF02719 Polysaccharide biosynthesis protein C4901_12000 PF00953 Glycosyl transferase family 4 C4901_12010 PF01370 NAD dependent epimerase/dehydratase family C4901_12015 PF00664 ABC transporter transmembrane region C4901_12015 PF00005 ABC transporter C4901_12020 PF00483 Nucleotidyl transferase C4901_12020 PF01050 Mannose-6-phosphate isomerase C4901_12025 PF01370 NAD dependent epimerase/dehydratase family C4901_12030 PF00294 pfkB family carbohydrate kinase C4901_12030 PF01467 Cytidylyltransferase-like C4901_12035 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C4901_12040 PF18073 Rubredoxin metal binding domain C4901_12050 PF00216 Bacterial DNA-binding protein C4901_12055 PF00575 S1 RNA binding domain C4901_12060 PF02224 Cytidylate kinase C4901_12065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C4901_12070 PF02153 Prephenate dehydrogenase C4901_12070 PF01842 ACT domain C4901_12075 PF00155 Aminotransferase class I and II C4901_12080 PF01842 ACT domain C4901_12080 PF01817 Chorismate mutase type II C4901_12080 PF00800 Prephenate dehydratase C4901_12085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C4901_12085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C4901_12085 PF01842 ACT domain C4901_12090 PF00266 Aminotransferase class-V C4901_12095 PF03989 DNA gyrase C-terminal domain, beta-propeller C4901_12095 PF00521 DNA gyrase/topoisomerase IV, subunit A C4901_12130 PF05717 IS66 Orf2 like protein C4901_12185 PF03824 High-affinity nickel-transport protein C4901_12190 PF02954 Bacterial regulatory protein, Fis family C4901_12190 PF00072 Response regulator receiver domain C4901_12190 PF00158 Sigma-54 interaction domain C4901_12195 PF00586 AIR synthase related protein, N-terminal domain C4901_12195 PF02769 AIR synthase related protein, C-terminal domain C4901_12200 PF01924 Hydrogenase formation hypA family C4901_12205 PF01455 HupF/HypC family C4901_12210 PF07503 HypF finger C4901_12210 PF00708 Acylphosphatase C4901_12210 PF01300 Telomere recombination C4901_12210 PF17788 HypF Kae1-like domain C4901_12215 PF02492 CobW/HypB/UreG, nucleotide-binding domain C4901_12220 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C4901_12240 PF01455 HupF/HypC family C4901_12245 PF01750 Hydrogenase maturation protease C4901_12250 PF01292 Prokaryotic cytochrome b561 C4901_12255 PF00374 Nickel-dependent hydrogenase C4901_12260 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal C4901_12260 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C4901_12275 PF00374 Nickel-dependent hydrogenase C4901_12280 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C4901_12280 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal C4901_12285 PF02743 Cache domain C4901_12285 PF00512 His Kinase A (phospho-acceptor) domain C4901_12285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_12300 PF00083 Sugar (and other) transporter C4901_12310 PF08448 PAS fold C4901_12310 PF00563 EAL domain C4901_12310 PF00990 Diguanylate cyclase, GGDEF domain C4901_12310 PF08447 PAS fold C4901_12320 PF01979 Amidohydrolase family C4901_12325 PF00756 Putative esterase C4901_12330 PF08240 Alcohol dehydrogenase GroES-like domain C4901_12330 PF00107 Zinc-binding dehydrogenase C4901_12365 PF12950 TaqI-like C-terminal specificity domain C4901_12365 PF07669 Eco57I restriction-modification methylase C4901_12370 PF04555 Restriction endonuclease XhoI C4901_12380 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C4901_12385 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_12400 PF00101 Ribulose bisphosphate carboxylase, small chain C4901_12405 PF00004 ATPase family associated with various cellular activities (AAA) C4901_12405 PF17866 AAA lid domain C4901_12410 PF00962 Adenosine/AMP deaminase C4901_12415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C4901_12415 PF00205 Thiamine pyrophosphate enzyme, central domain C4901_12415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C4901_12430 PF01625 Peptide methionine sulfoxide reductase C4901_12435 PF01641 SelR domain C4901_12440 PF01799 [2Fe-2S] binding domain C4901_12440 PF00111 2Fe-2S iron-sulfur cluster binding domain C4901_12445 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C4901_12455 PF12804 MobA-like NTP transferase domain C4901_12465 PF09278 MerR, DNA binding C4901_12465 PF00376 MerR family regulatory protein C4901_12475 PF08534 Redoxin C4901_12480 PF03100 CcmE C4901_12490 PF01578 Cytochrome C assembly protein C4901_12495 PF03379 CcmB protein C4901_12500 PF00005 ABC transporter C4901_12510 PF03918 Cytochrome C biogenesis protein C4901_12515 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal C4901_12515 PF01578 Cytochrome C assembly protein C4901_12530 PF03739 Lipopolysaccharide export system permease LptF/LptG C4901_12535 PF00883 Cytosol aminopeptidase family, catalytic domain C4901_12535 PF02789 Cytosol aminopeptidase family, N-terminal domain C4901_12555 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C4901_12565 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C4901_12570 PF00583 Acetyltransferase (GNAT) family C4901_12575 PF03167 Uracil DNA glycosylase superfamily C4901_12635 PF04358 DsrC like protein C4901_12640 PF01541 GIY-YIG catalytic domain C4901_12650 PF02811 PHP domain C4901_12650 PF14579 Helix-hairpin-helix motif C4901_12650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C4901_12650 PF07733 Bacterial DNA polymerase III alpha NTPase domain C4901_12650 PF01336 OB-fold nucleic acid binding domain C4901_12665 PF01726 LexA DNA binding domain C4901_12665 PF00717 Peptidase S24-like C4901_12670 PF00550 Phosphopantetheine attachment site C4901_12670 PF14765 Polyketide synthase dehydratase C4901_12670 PF00698 Acyl transferase domain C4901_12670 PF02801 Beta-ketoacyl synthase, C-terminal domain C4901_12670 PF16197 Ketoacyl-synthetase C-terminal extension C4901_12670 PF00107 Zinc-binding dehydrogenase C4901_12670 PF08240 Alcohol dehydrogenase GroES-like domain C4901_12670 PF00109 Beta-ketoacyl synthase, N-terminal domain C4901_12670 PF08659 KR domain C4901_12690 PF08502 LeuA allosteric (dimerisation) domain C4901_12690 PF00682 HMGL-like C4901_12695 PF07690 Major Facilitator Superfamily C4901_12705 PF01066 CDP-alcohol phosphatidyltransferase C4901_12710 PF02666 Phosphatidylserine decarboxylase C4901_12715 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C4901_12715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C4901_12720 PF10369 Small subunit of acetolactate synthase C4901_12725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C4901_12725 PF00205 Thiamine pyrophosphate enzyme, central domain C4901_12725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C4901_12750 PF09190 DALR domain C4901_12750 PF01406 tRNA synthetases class I (C) catalytic domain C4901_12755 PF00749 tRNA synthetases class I (E and Q), catalytic domain C4901_12760 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C4901_12765 PF00149 Calcineurin-like phosphoesterase C4901_12775 PF01053 Cys/Met metabolism PLP-dependent enzyme C4901_12780 PF00156 Phosphoribosyl transferase domain C4901_12795 PF08245 Mur ligase middle domain C4901_12795 PF02875 Mur ligase family, glutamate ligase domain C4901_12805 PF00290 Tryptophan synthase alpha chain C4901_12810 PF00291 Pyridoxal-phosphate dependent enzyme C4901_12815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C4901_12830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_12830 PF03466 LysR substrate binding domain C4901_12840 PF00437 Type II/IV secretion system protein C4901_12880 PF00850 Histone deacetylase domain C4901_12930 PF10437 Bacterial lipoate protein ligase C-terminus C4901_12930 PF03099 Biotin/lipoate A/B protein ligase family C4901_12940 PF01597 Glycine cleavage H-protein C4901_12950 PF01597 Glycine cleavage H-protein C4901_12955 PF02754 Cysteine-rich domain C4901_12985 PF13686 DsrE/DsrF/DrsH-like family C4901_12990 PF01206 Sulfurtransferase TusA C4901_12995 PF00581 Rhodanese-like domain C4901_13040 PF00563 EAL domain C4901_13040 PF00990 Diguanylate cyclase, GGDEF domain C4901_13040 PF03707 Bacterial signalling protein N terminal repeat C4901_13065 PF01914 MarC family integral membrane protein C4901_13070 PF02834 LigT like Phosphoesterase C4901_13080 PF02954 Bacterial regulatory protein, Fis family C4901_13080 PF00072 Response regulator receiver domain C4901_13080 PF00158 Sigma-54 interaction domain C4901_13085 PF00512 His Kinase A (phospho-acceptor) domain C4901_13085 PF13426 PAS domain C4901_13085 PF00672 HAMP domain C4901_13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_13090 PF02702 Osmosensitive K+ channel His kinase sensor domain C4901_13095 PF02669 K+-transporting ATPase, c chain C4901_13130 PF02371 Transposase IS116/IS110/IS902 family C4901_13130 PF01548 Transposase C4901_13135 PF03958 Bacterial type II/III secretion system short domain C4901_13135 PF00263 Bacterial type II and III secretion system protein C4901_13145 PF02371 Transposase IS116/IS110/IS902 family C4901_13145 PF01548 Transposase C4901_13150 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C4901_13150 PF00437 Type II/IV secretion system protein C4901_13165 PF05717 IS66 Orf2 like protein C4901_13175 PF00437 Type II/IV secretion system protein C4901_13180 PF00482 Type II secretion system (T2SS), protein F C4901_13185 PF07963 Prokaryotic N-terminal methylation motif C4901_13185 PF08334 Type II secretion system (T2SS), protein G C4901_13210 PF02669 K+-transporting ATPase, c chain C4901_13220 PF03814 Potassium-transporting ATPase A subunit C4901_13240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_13240 PF00512 His Kinase A (phospho-acceptor) domain C4901_13240 PF00989 PAS fold C4901_13245 PF10518 TAT (twin-arginine translocation) pathway signal sequence C4901_13245 PF00149 Calcineurin-like phosphoesterase C4901_13275 PF00990 Diguanylate cyclase, GGDEF domain C4901_13285 PF01850 PIN domain C4901_13305 PF02472 Biopolymer transport protein ExbD/TolR C4901_13310 PF01618 MotA/TolQ/ExbB proton channel family C4901_13315 PF07729 FCD domain C4901_13315 PF00392 Bacterial regulatory proteins, gntR family C4901_13325 PF13478 XdhC Rossmann domain C4901_13325 PF02625 XdhC and CoxI family C4901_13330 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) C4901_13345 PF00111 2Fe-2S iron-sulfur cluster binding domain C4901_13345 PF01799 [2Fe-2S] binding domain C4901_13350 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C4901_13350 PF01799 [2Fe-2S] binding domain C4901_13350 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C4901_13350 PF00111 2Fe-2S iron-sulfur cluster binding domain C4901_13360 PF00857 Isochorismatase family C4901_13365 PF01979 Amidohydrolase family C4901_13410 PF01048 Phosphorylase superfamily C4901_13415 PF01791 DeoC/LacD family aldolase C4901_13420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C4901_13450 PF08362 YcdC-like protein, C-terminal region C4901_13450 PF00440 Bacterial regulatory proteins, tetR family C4901_13455 PF07690 Major Facilitator Superfamily C4901_13460 PF03707 Bacterial signalling protein N terminal repeat C4901_13460 PF00563 EAL domain C4901_13460 PF00990 Diguanylate cyclase, GGDEF domain C4901_13470 PF00990 Diguanylate cyclase, GGDEF domain C4901_13470 PF03707 Bacterial signalling protein N terminal repeat C4901_13470 PF00563 EAL domain C4901_13475 PF00072 Response regulator receiver domain C4901_13480 PF00512 His Kinase A (phospho-acceptor) domain C4901_13480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_13480 PF00989 PAS fold C4901_13485 PF01270 Glycosyl hydrolases family 8 C4901_13500 PF07238 PilZ domain C4901_13500 PF00535 Glycosyl transferase family 2 C4901_13500 PF03552 Cellulose synthase C4901_13510 PF05717 IS66 Orf2 like protein C4901_13565 PF13361 UvrD-like helicase C-terminal domain C4901_13565 PF00580 UvrD/REP helicase N-terminal domain C4901_13585 PF01548 Transposase C4901_13585 PF02371 Transposase IS116/IS110/IS902 family C4901_13615 PF05717 IS66 Orf2 like protein C4901_13670 PF05717 IS66 Orf2 like protein C4901_13715 PF01695 IstB-like ATP binding protein C4901_13725 PF00665 Integrase core domain C4901_13765 PF06508 Queuosine biosynthesis protein QueC C4901_13770 PF04055 Radical SAM superfamily C4901_13780 PF00691 OmpA family C4901_13785 PF04052 TolB amino-terminal domain C4901_13785 PF07676 WD40-like Beta Propeller Repeat C4901_13795 PF02472 Biopolymer transport protein ExbD/TolR C4901_13800 PF01618 MotA/TolQ/ExbB proton channel family C4901_13805 PF03061 Thioesterase superfamily C4901_13810 PF05491 RuvB C-terminal winged helix domain C4901_13810 PF17864 RuvB AAA lid domain C4901_13810 PF05496 Holliday junction DNA helicase RuvB P-loop domain C4901_13815 PF01330 RuvA N terminal domain C4901_13815 PF07499 RuvA, C-terminal domain C4901_13820 PF02075 Crossover junction endodeoxyribonuclease RuvC C4901_13825 PF01709 Transcriptional regulator C4901_13840 PF01336 OB-fold nucleic acid binding domain C4901_13840 PF00152 tRNA synthetases class II (D, K and N) C4901_13840 PF02938 GAD domain C4901_13870 PF00478 IMP dehydrogenase / GMP reductase domain C4901_13870 PF00571 CBS domain C4901_13885 PF00437 Type II/IV secretion system protein C4901_13890 PF02595 Glycerate kinase family C4901_13900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_13900 PF00512 His Kinase A (phospho-acceptor) domain C4901_13900 PF08448 PAS fold C4901_13900 PF13188 PAS domain C4901_13900 PF00072 Response regulator receiver domain C4901_13905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C4901_13905 PF02770 Acyl-CoA dehydrogenase, middle domain C4901_13905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C4901_13910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C4901_13925 PF08502 LeuA allosteric (dimerisation) domain C4901_13925 PF00682 HMGL-like C4901_13955 PF00127 Copper binding proteins, plastocyanin/azurin family C4901_13965 PF00436 Single-strand binding protein family C4901_13970 PF17755 UvrA DNA-binding domain C4901_13970 PF17760 UvrA interaction domain C4901_13985 PF00294 pfkB family carbohydrate kinase C4901_13985 PF01467 Cytidylyltransferase-like C4901_13990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C4901_13995 PF01196 Ribosomal protein L17 C4901_14000 PF01000 RNA polymerase Rpb3/RpoA insert domain C4901_14000 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C4901_14000 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C4901_14005 PF01479 S4 domain C4901_14005 PF00163 Ribosomal protein S4/S9 N-terminal domain C4901_14010 PF00411 Ribosomal protein S11 C4901_14015 PF00416 Ribosomal protein S13/S18 C4901_14020 PF00444 Ribosomal protein L36 C4901_14025 PF00344 SecY translocase C4901_14030 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C4901_14035 PF00327 Ribosomal protein L30p/L7e C4901_14040 PF03719 Ribosomal protein S5, C-terminal domain C4901_14040 PF00333 Ribosomal protein S5, N-terminal domain C4901_14045 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C4901_14050 PF00347 Ribosomal protein L6 C4901_14055 PF00410 Ribosomal protein S8 C4901_14060 PF00253 Ribosomal protein S14p/S29e C4901_14065 PF00673 ribosomal L5P family C-terminus C4901_14065 PF00281 Ribosomal protein L5 C4901_14070 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C4901_14075 PF00238 Ribosomal protein L14p/L23e C4901_14080 PF00366 Ribosomal protein S17 C4901_14085 PF00831 Ribosomal L29 protein C4901_14090 PF00252 Ribosomal protein L16p/L10e C4901_14095 PF07650 KH domain C4901_14095 PF00189 Ribosomal protein S3, C-terminal domain C4901_14100 PF00237 Ribosomal protein L22p/L17e C4901_14105 PF00203 Ribosomal protein S19 C4901_14110 PF03947 Ribosomal Proteins L2, C-terminal domain C4901_14110 PF00181 Ribosomal Proteins L2, RNA binding domain C4901_14115 PF00276 Ribosomal protein L23 C4901_14120 PF00573 Ribosomal protein L4/L1 family C4901_14125 PF00297 Ribosomal protein L3 C4901_14130 PF00338 Ribosomal protein S10p/S20e C4901_14135 PF00009 Elongation factor Tu GTP binding domain C4901_14135 PF03144 Elongation factor Tu domain 2 C4901_14135 PF03143 Elongation factor Tu C-terminal domain C4901_14140 PF00679 Elongation factor G C-terminus C4901_14140 PF14492 Elongation Factor G, domain II C4901_14140 PF03764 Elongation factor G, domain IV C4901_14140 PF03144 Elongation factor Tu domain 2 C4901_14140 PF00009 Elongation factor Tu GTP binding domain C4901_14145 PF00177 Ribosomal protein S7p/S5e C4901_14150 PF00164 Ribosomal protein S12/S23 C4901_14155 PF04997 RNA polymerase Rpb1, domain 1 C4901_14155 PF00623 RNA polymerase Rpb1, domain 2 C4901_14155 PF04983 RNA polymerase Rpb1, domain 3 C4901_14155 PF05000 RNA polymerase Rpb1, domain 4 C4901_14155 PF04998 RNA polymerase Rpb1, domain 5 C4901_14160 PF04565 RNA polymerase Rpb2, domain 3 C4901_14160 PF04563 RNA polymerase beta subunit C4901_14160 PF00562 RNA polymerase Rpb2, domain 6 C4901_14160 PF04560 RNA polymerase Rpb2, domain 7 C4901_14160 PF10385 RNA polymerase beta subunit external 1 domain C4901_14160 PF04561 RNA polymerase Rpb2, domain 2 C4901_14165 PF16320 Ribosomal protein L7/L12 dimerisation domain C4901_14165 PF00542 Ribosomal protein L7/L12 C-terminal domain C4901_14170 PF00466 Ribosomal protein L10 C4901_14175 PF00687 Ribosomal protein L1p/L10e family C4901_14180 PF00298 Ribosomal protein L11, RNA binding domain C4901_14180 PF03946 Ribosomal protein L11, N-terminal domain C4901_14185 PF00467 KOW motif C4901_14185 PF02357 Transcription termination factor nusG C4901_14190 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C4901_14205 PF03143 Elongation factor Tu C-terminal domain C4901_14205 PF00009 Elongation factor Tu GTP binding domain C4901_14205 PF03144 Elongation factor Tu domain 2 C4901_14230 PF00694 Aconitase C-terminal domain C4901_14230 PF00330 Aconitase family (aconitate hydratase) C4901_14250 PF03309 Type III pantothenate kinase C4901_14255 PF03099 Biotin/lipoate A/B protein ligase family C4901_14255 PF02237 Biotin protein ligase C terminal domain C4901_14285 PF00579 tRNA synthetases class I (W and Y) C4901_14285 PF01479 S4 domain C4901_14290 PF03702 Anhydro-N-acetylmuramic acid kinase C4901_14295 PF01521 Iron-sulphur cluster biosynthesis C4901_14310 PF01118 Semialdehyde dehydrogenase, NAD binding domain C4901_14310 PF02774 Semialdehyde dehydrogenase, dimerisation domain C4901_14320 PF03707 Bacterial signalling protein N terminal repeat C4901_14320 PF00563 EAL domain C4901_14320 PF00990 Diguanylate cyclase, GGDEF domain C4901_14345 PF00380 Ribosomal protein S9/S16 C4901_14350 PF00572 Ribosomal protein L13 C4901_14360 PF02754 Cysteine-rich domain C4901_14360 PF13183 4Fe-4S dicluster domain C4901_14365 PF03232 Ubiquinone biosynthesis protein COQ7 C4901_14375 PF02566 OsmC-like protein C4901_14380 PF00218 Indole-3-glycerol phosphate synthase C4901_14385 PF00591 Glycosyl transferase family, a/b domain C4901_14385 PF02885 Glycosyl transferase family, helical bundle domain C4901_14390 PF00117 Glutamine amidotransferase class-I C4901_14395 PF04715 Anthranilate synthase component I, N terminal region C4901_14395 PF00425 chorismate binding enzyme C4901_14400 PF13419 Haloacid dehalogenase-like hydrolase C4901_14405 PF00834 Ribulose-phosphate 3 epimerase family C4901_14410 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain C4901_14410 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain C4901_14415 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase C4901_14425 PF02472 Biopolymer transport protein ExbD/TolR C4901_14430 PF01618 MotA/TolQ/ExbB proton channel family C4901_14440 PF00919 Uncharacterized protein family UPF0004 C4901_14440 PF04055 Radical SAM superfamily C4901_14440 PF18693 TRAM domain C4901_14460 PF01116 Fructose-bisphosphate aldolase class-II C4901_14465 PF00224 Pyruvate kinase, barrel domain C4901_14465 PF02887 Pyruvate kinase, alpha/beta domain C4901_14470 PF00162 Phosphoglycerate kinase C4901_14475 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C4901_14475 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C4901_14480 PF00456 Transketolase, thiamine diphosphate binding domain C4901_14480 PF02780 Transketolase, C-terminal domain C4901_14480 PF02779 Transketolase, pyrimidine binding domain C4901_14485 PF00485 Phosphoribulokinase / Uridine kinase family C4901_14490 PF00459 Inositol monophosphatase family C4901_14515 PF07194 P2 response regulator binding domain C4901_14515 PF01584 CheW-like domain C4901_14515 PF02895 Signal transducing histidine kinase, homodimeric domain C4901_14515 PF01627 Hpt domain C4901_14515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C4901_14520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C4901_14520 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C4901_14525 PF01584 CheW-like domain C4901_14530 PF00072 Response regulator receiver domain C4901_14535 PF00072 Response regulator receiver domain C4901_14545 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C4901_14545 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C4901_14555 PF02622 Uncharacterized ACR, COG1678 C4901_14560 PF03652 Holliday junction resolvase C4901_14565 PF00156 Phosphoribosyl transferase domain C4901_14570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C4901_14570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C4901_14575 PF01979 Amidohydrolase family C4901_14590 PF01177 Asp/Glu/Hydantoin racemase C4901_14595 PF00437 Type II/IV secretion system protein C4901_14600 PF00437 Type II/IV secretion system protein C4901_14605 PF03807 NADP oxidoreductase coenzyme F420-dependent C4901_14605 PF14748 Pyrroline-5-carboxylate reductase dimerisation C4901_14610 PF02325 YGGT family C4901_14615 PF08534 Redoxin C4901_14625 PF00085 Thioredoxin C4901_14630 PF00561 alpha/beta hydrolase fold C4901_14635 PF07021 Methionine biosynthesis protein MetW C4901_14635 PF00561 alpha/beta hydrolase fold C4901_14640 PF07690 Major Facilitator Superfamily C4901_14645 PF03372 Endonuclease/Exonuclease/phosphatase family C4901_14655 PF00156 Phosphoribosyl transferase domain C4901_14670 PF14306 PUA-like domain C4901_14670 PF01747 ATP-sulfurylase C4901_14675 PF13187 4Fe-4S dicluster domain C4901_14675 PF12139 Adenosine-5'-phosphosulfate reductase beta subunit C4901_14680 PF00890 FAD binding domain C4901_14690 PF00563 EAL domain C4901_14690 PF00990 Diguanylate cyclase, GGDEF domain C4901_14690 PF03707 Bacterial signalling protein N terminal repeat C4901_14690 PF13188 PAS domain C4901_14695 PF00034 Cytochrome c C4901_14695 PF03150 Di-haem cytochrome c peroxidase C4901_14700 PF04891 NifQ C4901_14705 PF12838 4Fe-4S dicluster domain C4901_14710 PF05082 Rop-like C4901_14715 PF03270 Protein of unknown function, DUF269 C4901_14720 PF02579 Dinitrogenase iron-molybdenum cofactor C4901_14725 PF00148 Nitrogenase component 1 type Oxidoreductase C4901_14730 PF04324 BFD-like [2Fe-2S] binding domain C4901_14730 PF00148 Nitrogenase component 1 type Oxidoreductase C4901_14735 PF00111 2Fe-2S iron-sulfur cluster binding domain C4901_14740 PF00148 Nitrogenase component 1 type Oxidoreductase C4901_14740 PF11844 Domain of unknown function (DUF3364) C4901_14745 PF00148 Nitrogenase component 1 type Oxidoreductase C4901_14750 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family C4901_14765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C4901_14775 PF06988 NifT/FixU protein C4901_14780 PF00266 Aminotransferase class-V C4901_14785 PF04319 NifZ domain C4901_14795 PF00037 4Fe-4S binding domain C4901_14800 PF04055 Radical SAM superfamily C4901_14800 PF02579 Dinitrogenase iron-molybdenum cofactor C4901_14810 PF01521 Iron-sulphur cluster biosynthesis C4901_14815 PF00563 EAL domain C4901_14815 PF00990 Diguanylate cyclase, GGDEF domain C4901_14815 PF03707 Bacterial signalling protein N terminal repeat C4901_14815 PF13188 PAS domain C4901_14825 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_14830 PF01012 Electron transfer flavoprotein domain C4901_14830 PF00766 Electron transfer flavoprotein FAD-binding domain C4901_14835 PF01012 Electron transfer flavoprotein domain C4901_14845 PF03206 Nitrogen fixation protein NifW C4901_14850 PF00682 HMGL-like C4901_14855 PF01592 NifU-like N terminal domain C4901_14860 PF00158 Sigma-54 interaction domain C4901_14860 PF02954 Bacterial regulatory protein, Fis family C4901_14860 PF01590 GAF domain C4901_14880 PF00563 EAL domain C4901_14880 PF03707 Bacterial signalling protein N terminal repeat C4901_14880 PF00990 Diguanylate cyclase, GGDEF domain C4901_14915 PF00072 Response regulator receiver domain C4901_14915 PF00158 Sigma-54 interaction domain C4901_14915 PF02954 Bacterial regulatory protein, Fis family C4901_14925 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C4901_14925 PF02222 ATP-grasp domain C4901_14930 PF00731 AIR carboxylase C4901_14935 PF00176 SNF2 family N-terminal domain C4901_14935 PF00271 Helicase conserved C-terminal domain C4901_14940 PF01300 Telomere recombination C4901_14940 PF03481 Putative GTP-binding controlling metal-binding C4901_14950 PF00202 Aminotransferase class-III C4901_14960 PF01979 Amidohydrolase family C4901_14970 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) C4901_14975 PF01116 Fructose-bisphosphate aldolase class-II C4901_14980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_14980 PF03466 LysR substrate binding domain C4901_15010 PF03707 Bacterial signalling protein N terminal repeat C4901_15010 PF00990 Diguanylate cyclase, GGDEF domain C4901_15010 PF00563 EAL domain C4901_15015 PF03099 Biotin/lipoate A/B protein ligase family C4901_15015 PF10437 Bacterial lipoate protein ligase C-terminus C4901_15030 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) C4901_15035 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C4901_15035 PF00361 Proton-conducting membrane transporter C4901_15060 PF13247 4Fe-4S dicluster domain C4901_15060 PF14711 Respiratory nitrate reductase beta C-terminal C4901_15065 PF02613 Nitrate reductase delta subunit C4901_15075 PF04055 Radical SAM superfamily C4901_15075 PF06463 Molybdenum Cofactor Synthesis C C4901_15080 PF03595 Voltage-dependent anion channel C4901_15120 PF12728 Helix-turn-helix domain C4901_15180 PF00115 Cytochrome C and Quinol oxidase polypeptide I C4901_15195 PF00114 Pilin (bacterial filament) C4901_15195 PF07963 Prokaryotic N-terminal methylation motif C4901_15255 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH C4901_15275 PF02371 Transposase IS116/IS110/IS902 family C4901_15275 PF01548 Transposase C4901_15285 PF18818 Metallopeptidase superfamily domain C4901_15285 PF08401 Domain of unknown function (DUF1738) C4901_15305 PF01131 DNA topoisomerase C4901_15305 PF01751 Toprim domain C4901_15345 PF18272 single-stranded DNA binding TraI N-terminal subdomain C4901_15345 PF08751 TrwC relaxase C4901_15345 PF18340 DNA relaxase TraI 2B/2B-like domain C4901_15345 PF07057 DNA helicase TraI C4901_15370 PF10412 Type IV secretion-system coupling protein DNA-binding domain C4901_15370 PF12615 F sex factor protein N terminal C4901_15470 PF00114 Pilin (bacterial filament) C4901_15470 PF07963 Prokaryotic N-terminal methylation motif C4901_15475 PF00589 Phage integrase family C4901_15480 PF06965 Na+/H+ antiporter 1 C4901_15480 PF01343 Peptidase family S49 C4901_15490 PF00563 EAL domain C4901_15490 PF00990 Diguanylate cyclase, GGDEF domain C4901_15490 PF08448 PAS fold C4901_15490 PF08447 PAS fold C4901_15505 PF10417 C-terminal domain of 1-Cys peroxiredoxin C4901_15505 PF00578 AhpC/TSA family C4901_15510 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C4901_15510 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C4901_15515 PF00667 FAD binding domain C4901_15515 PF00258 Flavodoxin C4901_15515 PF00175 Oxidoreductase NAD-binding domain C4901_15525 PF00009 Elongation factor Tu GTP binding domain C4901_15530 PF01507 Phosphoadenosine phosphosulfate reductase family C4901_15535 PF01507 Phosphoadenosine phosphosulfate reductase family C4901_15540 PF03466 LysR substrate binding domain C4901_15540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C4901_15565 PF02167 Cytochrome C1 family C4901_15575 PF00032 Cytochrome b(C-terminal)/b6/petD C4901_15575 PF00033 Cytochrome b/b6/petB C4901_15600 PF00034 Cytochrome c C4901_15615 PF03707 Bacterial signalling protein N terminal repeat C4901_15615 PF13188 PAS domain C4901_15615 PF00563 EAL domain C4901_15615 PF00990 Diguanylate cyclase, GGDEF domain C4901_15645 PF00528 Binding-protein-dependent transport system inner membrane component C4901_15650 PF00528 Binding-protein-dependent transport system inner membrane component C4901_15655 PF00005 ABC transporter C4901_15655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C4901_15660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C4901_15660 PF00005 ABC transporter C4901_15665 PF13361 UvrD-like helicase C-terminal domain C4901_15665 PF00580 UvrD/REP helicase N-terminal domain C4901_15675 PF07690 Major Facilitator Superfamily C4901_15730 PF00665 Integrase core domain C4901_15760 PF00140 Sigma-70 factor, region 1.2 C4901_15760 PF04542 Sigma-70 region 2 C4901_15760 PF04539 Sigma-70 region 3 C4901_15760 PF04545 Sigma-70, region 4 C4901_15760 PF03979 Sigma-70 factor, region 1.1 C4901_15760 PF04546 Sigma-70, non-essential region C4901_15765 PF10410 DnaB-helicase binding domain of primase C4901_15765 PF08278 DNA primase DnaG DnaB-binding C4901_15765 PF13662 Toprim domain C4901_15765 PF01807 CHC2 zinc finger C4901_15765 PF08275 DNA primase catalytic core, N-terminal domain C4901_15775 PF01165 Ribosomal protein S21 C4901_15780 PF00814 Glycoprotease family C4901_15785 PF02660 Glycerol-3-phosphate acyltransferase C4901_15790 PF02152 Dihydroneopterin aldolase C4901_15840 PF08406 CbbQ/NirQ/NorQ C-terminal C4901_15840 PF07728 AAA domain (dynein-related subfamily) C4901_15845 PF01743 Poly A polymerase head domain C4901_15845 PF12627 Probable RNA and SrmB- binding site of polymerase A C4901_15845 PF01966 HD domain C4901_15865 PF14718 Soluble lytic murein transglycosylase L domain C4901_15865 PF01464 Transglycosylase SLT domain C4901_15870 PF00171 Aldehyde dehydrogenase family C4901_15880 PF10672 S-adenosylmethionine-dependent methyltransferase C4901_15880 PF17785 PUA-like domain C4901_15885 PF03190 Protein of unknown function, DUF255 C4901_15890 PF00581 Rhodanese-like domain C4901_15905 PF00294 pfkB family carbohydrate kinase C4901_15910 PF02347 Glycine cleavage system P-protein C4901_15915 PF08534 Redoxin C4901_15920 PF02347 Glycine cleavage system P-protein C4901_15930 PF08669 Glycine cleavage T-protein C-terminal barrel domain C4901_15930 PF01571 Aminomethyltransferase folate-binding domain C4901_15940 PF02954 Bacterial regulatory protein, Fis family C4901_15940 PF00158 Sigma-54 interaction domain C4901_15940 PF00072 Response regulator receiver domain C4901_15970 PF02350 UDP-N-acetylglucosamine 2-epimerase C4901_15995 PF03372 Endonuclease/Exonuclease/phosphatase family C4901_16005 PF01432 Peptidase family M3 C4901_16010 PF01488 Shikimate / quinate 5-dehydrogenase C4901_16010 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C4901_16010 PF08501 Shikimate dehydrogenase substrate binding domain C4901_16020 PF13417 Glutathione S-transferase, N-terminal domain C4901_16020 PF00043 Glutathione S-transferase, C-terminal domain C4901_16025 PF01040 UbiA prenyltransferase family C4901_16030 PF12728 Helix-turn-helix domain C4901_16045 PF17191 RecG wedge domain C4901_16045 PF00270 DEAD/DEAH box helicase C4901_16045 PF13749 Putative ATP-dependent DNA helicase recG C-terminal C4901_16065 PF17191 RecG wedge domain C4901_16065 PF00271 Helicase conserved C-terminal domain C4901_16065 PF00270 DEAD/DEAH box helicase C4901_16070 PF01042 Endoribonuclease L-PSP C4901_16075 PF04607 Region found in RelA / SpoT proteins C4901_16075 PF13291 ACT domain C4901_16075 PF02824 TGS domain C4901_16080 PF01192 RNA polymerase Rpb6 C4901_16085 PF00625 Guanylate kinase C4901_16090 PF03793 PASTA domain C4901_16090 PF00069 Protein kinase domain C4901_16100 PF03725 3' exoribonuclease family, domain 2 C4901_16100 PF01138 3' exoribonuclease family, domain 1 C4901_16105 PF01725 Ham1 family C4901_16110 PF06969 HemN C-terminal domain C4901_16110 PF04055 Radical SAM superfamily C4901_16120 PF01206 Sulfurtransferase TusA C4901_16135 PF01966 HD domain C4901_16135 PF11871 Domain of unknown function (DUF3391) C4901_16150 PF00873 AcrB/AcrD/AcrF family C4901_16185 PF02492 CobW/HypB/UreG, nucleotide-binding domain C4901_16190 PF01730 UreF C4901_16195 PF02814 UreE urease accessory protein, N-terminal domain C4901_16195 PF05194 UreE urease accessory protein, C-terminal domain C4901_16200 PF01979 Amidohydrolase family C4901_16200 PF00449 Urease alpha-subunit, N-terminal domain C4901_16205 PF00699 Urease beta subunit C4901_16215 PF01774 UreD urease accessory protein C4901_16225 PF00873 AcrB/AcrD/AcrF family C4901_16255 PF02374 Anion-transporting ATPase C4901_16255 PF17886 HSP20-like domain found in ArsA C4901_16265 PF00271 Helicase conserved C-terminal domain C4901_16265 PF18074 Primosomal protein N C-terminal domain C4901_16265 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C4901_16265 PF00270 DEAD/DEAH box helicase C4901_16265 PF17764 3′ DNA-binding domain (3′BD) C4901_16270 PF01208 Uroporphyrinogen decarboxylase (URO-D) C4901_16275 PF07992 Pyridine nucleotide-disulphide oxidoreductase C4901_16275 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C4901_16280 PF01645 Conserved region in glutamate synthase C4901_16280 PF04898 Glutamate synthase central domain C4901_16280 PF00310 Glutamine amidotransferases class-II C4901_16280 PF01493 GXGXG motif C4901_16285 PF01761 3-dehydroquinate synthase C4901_16290 PF01202 Shikimate kinase C4901_16295 PF11741 AMIN domain C4901_16295 PF07660 Secretin and TonB N terminus short domain C4901_16295 PF03958 Bacterial type II/III secretion system short domain C4901_16295 PF00263 Bacterial type II and III secretion system protein C4901_16340 PF17092 Penicillin-binding protein OB-like domain C4901_16340 PF00912 Transglycosylase C4901_16340 PF00905 Penicillin binding protein transpeptidase domain C4901_16350 PF03485 Arginyl tRNA synthetase N terminal domain C4901_16350 PF00750 tRNA synthetases class I (R) C4901_16350 PF05746 DALR anticodon binding domain C4901_16360 PF00581 Rhodanese-like domain C4901_16365 PF02560 Cyanate lyase C-terminal domain C4901_16370 PF00005 ABC transporter C4901_16375 PF00528 Binding-protein-dependent transport system inner membrane component C4901_16380 PF00005 ABC transporter C4901_16385 PF02954 Bacterial regulatory protein, Fis family C4901_16385 PF00158 Sigma-54 interaction domain C4901_16385 PF01590 GAF domain C4901_16400 PF02675 S-adenosylmethionine decarboxylase C4901_16410 PF17284 Spermidine synthase tetramerisation domain C4901_16415 PF02867 Ribonucleotide reductase, barrel domain C4901_16415 PF00317 Ribonucleotide reductase, all-alpha domain C4901_16415 PF03477 ATP cone domain C4901_16430 PF01850 PIN domain C4901_16450 PF01145 SPFH domain / Band 7 family C4901_16450 PF16200 C-terminal region of band_7 C4901_16470 PF01206 Sulfurtransferase TusA C4901_16475 PF00268 Ribonucleotide reductase, small chain C4901_16490 PF01047 MarR family C4901_16505 PF00873 AcrB/AcrD/AcrF family C4901_16510 PF13533 Biotin-lipoyl like C4901_16515 PF02321 Outer membrane efflux protein C4901_16520 PF00043 Glutathione S-transferase, C-terminal domain C4901_16520 PF02798 Glutathione S-transferase, N-terminal domain C4901_16530 PF00528 Binding-protein-dependent transport system inner membrane component C4901_16535 PF00005 ABC transporter C4901_16535 PF03459 TOBE domain C4901_16535 PF10649 Protein of unknown function (DUF2478) C4901_16540 PF00994 Probable molybdopterin binding domain C4901_16545 PF00994 Probable molybdopterin binding domain C4901_16545 PF03454 MoeA C-terminal region (domain IV) C4901_16545 PF03453 MoeA N-terminal region (domain I and II) C4901_16550 PF12804 MobA-like NTP transferase domain C4901_16555 PF01936 NYN domain C4901_16560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C4901_16560 PF00384 Molybdopterin oxidoreductase C4901_16560 PF01568 Molydopterin dinucleotide binding domain C4901_16570 PF07690 Major Facilitator Superfamily C4901_16595 PF00909 Ammonium Transporter Family C4901_16600 PF00543 Nitrogen regulatory protein P-II C4901_16605 PF01717 Cobalamin-independent synthase, Catalytic domain C4901_16605 PF08267 Cobalamin-independent synthase, N-terminal domain C4901_16695 PF00580 UvrD/REP helicase N-terminal domain C4901_16695 PF13361 UvrD-like helicase C-terminal domain C4901_16695 PF12705 PD-(D/E)XK nuclease superfamily C4901_16720 PF11799 impB/mucB/samB family C-terminal domain C4901_16720 PF00817 impB/mucB/samB family C4901_16725 PF00563 EAL domain C4901_16725 PF00990 Diguanylate cyclase, GGDEF domain C4901_16725 PF03707 Bacterial signalling protein N terminal repeat C4901_16755 PF00723 Glycosyl hydrolases family 15 C4901_16760 PF01197 Ribosomal protein L31 C4901_16765 PF00390 Malic enzyme, N-terminal domain C4901_16765 PF03949 Malic enzyme, NAD binding domain C4901_16770 PF05175 Methyltransferase small domain C4901_16775 PF12833 Helix-turn-helix domain C4901_16775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C4901_16775 PF02805 Metal binding domain of Ada C4901_16775 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C4901_16790 PF00501 AMP-binding enzyme C4901_16795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C4901_16795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C4901_16795 PF00378 Enoyl-CoA hydratase/isomerase C4901_16800 PF02803 Thiolase, C-terminal domain C4901_16800 PF00108 Thiolase, N-terminal domain C4901_16805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C4901_16805 PF02770 Acyl-CoA dehydrogenase, middle domain C4901_16805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C4901_16825 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C4901_16855 PF00205 Thiamine pyrophosphate enzyme, central domain C4901_16855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C4901_16855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C4901_16870 PF02875 Mur ligase family, glutamate ligase domain C4901_16870 PF08245 Mur ligase middle domain C4901_16870 PF01225 Mur ligase family, catalytic domain C4901_16880 PF00570 HRDC domain C4901_16880 PF01612 3'-5' exonuclease C4901_16885 PF01926 50S ribosome-binding GTPase C4901_16895 PF01555 DNA methylase C4901_16905 PF01612 3'-5' exonuclease C4901_16905 PF00476 DNA polymerase family A C4901_16905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C4901_16905 PF01367 5'-3' exonuclease, C-terminal SAM fold C4901_16910 PF03641 Possible lysine decarboxylase C4901_16915 PF01636 Phosphotransferase enzyme family C4901_16930 PF13361 UvrD-like helicase C-terminal domain C4901_16930 PF00580 UvrD/REP helicase N-terminal domain C4901_16945 PF01906 Putative heavy-metal-binding C4901_16950 PF04012 PspA/IM30 family C4901_16970 PF13614 AAA domain C4901_16975 PF01380 SIS domain C4901_16980 PF00132 Bacterial transferase hexapeptide (six repeats) C4901_16980 PF12804 MobA-like NTP transferase domain C4901_16985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C4901_16990 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain C4901_16990 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C4901_16995 PF02874 ATP synthase alpha/beta family, beta-barrel domain C4901_16995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C4901_17000 PF00231 ATP synthase C4901_17005 PF02874 ATP synthase alpha/beta family, beta-barrel domain C4901_17005 PF00306 ATP synthase alpha/beta chain, C terminal domain C4901_17005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C4901_17010 PF00213 ATP synthase delta (OSCP) subunit C4901_17015 PF00430 ATP synthase B/B' CF(0) C4901_17020 PF00137 ATP synthase subunit C C4901_17025 PF00119 ATP synthase A chain C4901_17040 PF17762 HTH domain found in ParB protein C4901_17040 PF02195 ParB-like nuclease domain C4901_17045 PF13614 AAA domain C4901_17050 PF02527 rRNA small subunit methyltransferase G C4901_17055 PF01134 Glucose inhibited division protein A C4901_17055 PF13932 GidA associated domain C4901_17090 PF17863 AAA lid domain C4901_17090 PF07726 ATPase family associated with various cellular activities (AAA) C4901_17100 PF11992 Domain of unknown function (DUF3488) C4901_17100 PF13559 Domain of unknown function (DUF4129) C4901_17100 PF01841 Transglutaminase-like superfamily C4901_17105 PF06965 Na+/H+ antiporter 1 C4901_17110 PF12631 MnmE helical domain C4901_17110 PF01926 50S ribosome-binding GTPase C4901_17110 PF10396 GTP-binding protein TrmE N-terminus C4901_17115 PF14849 YidC periplasmic domain C4901_17115 PF02096 60Kd inner membrane protein C4901_17120 PF01809 Putative membrane protein insertion efficiency factor C4901_17125 PF00825 Ribonuclease P