locus-tag class description BI364_00005 PF11638 DnaA N-terminal domain BI364_00005 PF00308 Bacterial dnaA protein BI364_00005 PF08299 Bacterial dnaA protein helix-turn-helix BI364_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BI364_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BI364_00010 PF02767 DNA polymerase III beta subunit, central domain BI364_00015 PF02463 RecF/RecN/SMC N terminal domain BI364_00020 PF18053 DNA gyrase B subunit insert domain BI364_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_00020 PF00986 DNA gyrase B subunit, carboxyl terminus BI364_00020 PF01751 Toprim domain BI364_00020 PF00204 DNA gyrase B BI364_00025 PF01432 Peptidase family M3 BI364_00035 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BI364_00040 PF00892 EamA-like transporter family BI364_00050 PF00175 Oxidoreductase NAD-binding domain BI364_00050 PF00970 Oxidoreductase FAD-binding domain BI364_00050 PF00111 2Fe-2S iron-sulfur cluster binding domain BI364_00065 PF02602 Uroporphyrinogen-III synthase HemD BI364_00070 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BI364_00070 PF03900 Porphobilinogen deaminase, C-terminal domain BI364_00080 PF00072 Response regulator receiver domain BI364_00080 PF04397 LytTr DNA-binding domain BI364_00085 PF13492 GAF domain BI364_00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_00085 PF06580 Histidine kinase BI364_00085 PF07694 5TMR of 5TMR-LYT BI364_00090 PF00206 Lyase BI364_00090 PF14698 Argininosuccinate lyase C-terminal BI364_00095 PF00589 Phage integrase family BI364_00095 PF13495 Phage integrase, N-terminal SAM-like domain BI364_00120 PF04349 Periplasmic glucan biosynthesis protein, MdoG BI364_00155 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BI364_00155 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BI364_00160 PF08241 Methyltransferase domain BI364_00165 PF01206 Sulfurtransferase TusA BI364_00170 PF01678 Diaminopimelate epimerase BI364_00180 PF02899 Phage integrase, N-terminal SAM-like domain BI364_00180 PF00589 Phage integrase family BI364_00185 PF00227 Proteasome subunit BI364_00190 PF00004 ATPase family associated with various cellular activities (AAA) BI364_00190 PF07724 AAA domain (Cdc48 subfamily) BI364_00190 PF10431 C-terminal, D2-small domain, of ClpB protein BI364_00200 PF01209 ubiE/COQ5 methyltransferase family BI364_00210 PF03109 ABC1 family BI364_00215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_00215 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_00220 PF00364 Biotin-requiring enzyme BI364_00220 PF02817 e3 binding domain BI364_00220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BI364_00225 PF02779 Transketolase, pyrimidine binding domain BI364_00225 PF00676 Dehydrogenase E1 component BI364_00225 PF16078 2-oxoglutarate dehydrogenase N-terminus BI364_00225 PF16870 2-oxoglutarate dehydrogenase C-terminal BI364_00230 PF01206 Sulfurtransferase TusA BI364_00235 PF00440 Bacterial regulatory proteins, tetR family BI364_00240 PF00476 DNA polymerase family A BI364_00240 PF01367 5'-3' exonuclease, C-terminal SAM fold BI364_00240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BI364_00240 PF01612 3'-5' exonuclease BI364_00245 PF03949 Malic enzyme, NAD binding domain BI364_00245 PF00390 Malic enzyme, N-terminal domain BI364_00250 PF00565 Staphylococcal nuclease homologue BI364_00255 PF01197 Ribosomal protein L31 BI364_00260 PF04055 Radical SAM superfamily BI364_00260 PF00919 Uncharacterized protein family UPF0004 BI364_00260 PF18693 TRAM domain BI364_00280 PF06969 HemN C-terminal domain BI364_00280 PF04055 Radical SAM superfamily BI364_00285 PF01725 Ham1 family BI364_00290 PF01138 3' exoribonuclease family, domain 1 BI364_00290 PF03725 3' exoribonuclease family, domain 2 BI364_00295 PF08340 Domain of unknown function (DUF1732) BI364_00295 PF03755 YicC-like family, N-terminal region BI364_00305 PF00011 Hsp20/alpha crystallin family BI364_00310 PF01556 DnaJ C terminal domain BI364_00310 PF00226 DnaJ domain BI364_00315 PF13180 PDZ domain BI364_00315 PF00595 PDZ domain BI364_00320 PF02391 MoaE protein BI364_00325 PF02597 ThiS family BI364_00330 PF01967 MoaC family BI364_00350 PF00633 Helix-hairpin-helix motif BI364_00350 PF00730 HhH-GPD superfamily base excision DNA repair protein BI364_00350 PF14815 NUDIX domain BI364_00355 PF04362 Bacterial Fe(2+) trafficking BI364_00400 PF06965 Na+/H+ antiporter 1 BI364_00435 PF02321 Outer membrane efflux protein BI364_00440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BI364_00440 PF00529 HlyD membrane-fusion protein of T1SS BI364_00445 PF07690 Major Facilitator Superfamily BI364_00455 PF00625 Guanylate kinase BI364_00460 PF01192 RNA polymerase Rpb6 BI364_00465 PF13291 ACT domain BI364_00465 PF02824 TGS domain BI364_00465 PF04607 Region found in RelA / SpoT proteins BI364_00470 PF01042 Endoribonuclease L-PSP BI364_00475 PF00270 DEAD/DEAH box helicase BI364_00475 PF00271 Helicase conserved C-terminal domain BI364_00475 PF17191 RecG wedge domain BI364_00490 PF04493 Endonuclease V BI364_00505 PF00294 pfkB family carbohydrate kinase BI364_00520 PF00990 Diguanylate cyclase, GGDEF domain BI364_00520 PF08448 PAS fold BI364_00520 PF00563 EAL domain BI364_00535 PF00924 Mechanosensitive ion channel BI364_00535 PF12795 Mechanosensitive ion channel porin domain BI364_00535 PF12794 Mechanosensitive ion channel inner membrane domain 1 BI364_00540 PF07690 Major Facilitator Superfamily BI364_00545 PF11849 Domain of unknown function (DUF3369) BI364_00550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_00550 PF00512 His Kinase A (phospho-acceptor) domain BI364_00550 PF00497 Bacterial extracellular solute-binding proteins, family 3 BI364_00555 PF03372 Endonuclease/Exonuclease/phosphatase family BI364_00560 PF00999 Sodium/hydrogen exchanger family BI364_00560 PF03471 Transporter associated domain BI364_00565 PF00156 Phosphoribosyl transferase domain BI364_00575 PF00696 Amino acid kinase family BI364_00580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BI364_00580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BI364_00580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BI364_00580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BI364_00585 PF00692 dUTPase BI364_00590 PF02441 Flavoprotein BI364_00590 PF04127 DNA / pantothenate metabolism flavoprotein BI364_00600 PF04002 RadC-like JAB domain BI364_00605 PF00155 Aminotransferase class I and II BI364_00610 PF06968 Biotin and Thiamin Synthesis associated domain BI364_00610 PF04055 Radical SAM superfamily BI364_00620 PF00156 Phosphoribosyl transferase domain BI364_00630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_00630 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_00635 PF13488 Glycine zipper BI364_00635 PF00691 OmpA family BI364_00640 PF01488 Shikimate / quinate 5-dehydrogenase BI364_00640 PF08501 Shikimate dehydrogenase substrate binding domain BI364_00640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BI364_00645 PF00490 Delta-aminolevulinic acid dehydratase BI364_00650 PF01218 Coproporphyrinogen III oxidase BI364_00655 PF01300 Telomere recombination BI364_00660 PF01131 DNA topoisomerase BI364_00660 PF01751 Toprim domain BI364_00660 PF13368 Topoisomerase C-terminal repeat BI364_00665 PF04361 Protein of unknown function (DUF494) BI364_00670 PF02481 DNA recombination-mediator protein A BI364_00670 PF17782 DprA winged helix domain BI364_00680 PF01327 Polypeptide deformylase BI364_00690 PF01189 16S rRNA methyltransferase RsmB/F BI364_00690 PF01029 NusB family BI364_00700 PF00989 PAS fold BI364_00700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_00700 PF00672 HAMP domain BI364_00700 PF00512 His Kinase A (phospho-acceptor) domain BI364_00705 PF00158 Sigma-54 interaction domain BI364_00705 PF00072 Response regulator receiver domain BI364_00705 PF02954 Bacterial regulatory protein, Fis family BI364_00710 PF02080 TrkA-C domain BI364_00710 PF02254 TrkA-N domain BI364_00715 PF02386 Cation transport protein BI364_00745 PF01171 PP-loop family BI364_00750 PF00561 alpha/beta hydrolase fold BI364_00755 PF02580 D-Tyr-tRNA(Tyr) deacylase BI364_00760 PF13545 Crp-like helix-turn-helix domain BI364_00760 PF00027 Cyclic nucleotide-binding domain BI364_00765 PF00475 Imidazoleglycerol-phosphate dehydratase BI364_00770 PF00117 Glutamine amidotransferase class-I BI364_00775 PF00977 Histidine biosynthesis protein BI364_00780 PF00977 Histidine biosynthesis protein BI364_00785 PF01502 Phosphoribosyl-AMP cyclohydrolase BI364_00790 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BI364_00795 PF02416 mttA/Hcf106 family BI364_00800 PF02416 mttA/Hcf106 family BI364_00805 PF00902 Sec-independent protein translocase protein (TatC) BI364_00825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BI364_00825 PF00384 Molybdopterin oxidoreductase BI364_00825 PF01568 Molydopterin dinucleotide binding domain BI364_00825 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BI364_00825 PF12838 4Fe-4S dicluster domain BI364_00830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_00830 PF03466 LysR substrate binding domain BI364_00835 PF00512 His Kinase A (phospho-acceptor) domain BI364_00835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_00840 PF02954 Bacterial regulatory protein, Fis family BI364_00840 PF00072 Response regulator receiver domain BI364_00840 PF00158 Sigma-54 interaction domain BI364_00845 PF08668 HDOD domain BI364_00845 PF00563 EAL domain BI364_00860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BI364_00865 PF00528 Binding-protein-dependent transport system inner membrane component BI364_00870 PF12911 N-terminal TM domain of oligopeptide transport permease C BI364_00870 PF00528 Binding-protein-dependent transport system inner membrane component BI364_00875 PF00005 ABC transporter BI364_00875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BI364_00880 PF00005 ABC transporter BI364_00880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BI364_00885 PF01427 D-ala-D-ala dipeptidase BI364_00900 PF04546 Sigma-70, non-essential region BI364_00900 PF04545 Sigma-70, region 4 BI364_00900 PF04539 Sigma-70 region 3 BI364_00900 PF04542 Sigma-70 region 2 BI364_00900 PF00140 Sigma-70 factor, region 1.2 BI364_00900 PF03979 Sigma-70 factor, region 1.1 BI364_00905 PF01807 CHC2 zinc finger BI364_00905 PF08275 DNA primase catalytic core, N-terminal domain BI364_00905 PF08278 DNA primase DnaG DnaB-binding BI364_00905 PF10410 DnaB-helicase binding domain of primase BI364_00910 PF01645 Conserved region in glutamate synthase BI364_00910 PF01493 GXGXG motif BI364_00910 PF00310 Glutamine amidotransferases class-II BI364_00910 PF04898 Glutamate synthase central domain BI364_00920 PF01966 HD domain BI364_00920 PF13286 Phosphohydrolase-associated domain BI364_00925 PF01761 3-dehydroquinate synthase BI364_00930 PF01202 Shikimate kinase BI364_00935 PF00263 Bacterial type II and III secretion system protein BI364_00935 PF11741 AMIN domain BI364_00935 PF07660 Secretin and TonB N terminus short domain BI364_00935 PF03958 Bacterial type II/III secretion system short domain BI364_00960 PF00905 Penicillin binding protein transpeptidase domain BI364_00960 PF17092 Penicillin-binding protein OB-like domain BI364_00960 PF00912 Transglycosylase BI364_00970 PF01208 Uroporphyrinogen decarboxylase (URO-D) BI364_00980 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BI364_00980 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_00990 PF01165 Ribosomal protein S21 BI364_01000 PF02660 Glycerol-3-phosphate acyltransferase BI364_01005 PF00561 alpha/beta hydrolase fold BI364_01010 PF08241 Methyltransferase domain BI364_01015 PF00115 Cytochrome C and Quinol oxidase polypeptide I BI364_01030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BI364_01030 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP BI364_01035 PF13746 4Fe-4S dicluster domain BI364_01035 PF12801 4Fe-4S binding domain BI364_01035 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase BI364_01050 PF03597 Cytochrome oxidase maturation protein cbb3-type BI364_01055 PF04545 Sigma-70, region 4 BI364_01055 PF00140 Sigma-70 factor, region 1.2 BI364_01055 PF04542 Sigma-70 region 2 BI364_01060 PF18075 FtsX extracellular domain BI364_01065 PF00005 ABC transporter BI364_01070 PF00448 SRP54-type protein, GTPase domain BI364_01070 PF02881 SRP54-type protein, helical bundle domain BI364_01080 PF02646 RmuC family BI364_01085 PF04204 Homoserine O-succinyltransferase BI364_01095 PF07690 Major Facilitator Superfamily BI364_01100 PF13458 Periplasmic binding protein BI364_01105 PF02653 Branched-chain amino acid transport system / permease component BI364_01115 PF00005 ABC transporter BI364_01115 PF12399 Branched-chain amino acid ATP-binding cassette transporter BI364_01120 PF00005 ABC transporter BI364_01130 PF02384 N-6 DNA Methylase BI364_01215 PF16864 Dimerisation domain BI364_01215 PF00891 O-methyltransferase domain BI364_01220 PF01810 LysE type translocator BI364_01245 PF00732 GMC oxidoreductase BI364_01245 PF05199 GMC oxidoreductase BI364_01250 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BI364_01260 PF00571 CBS domain BI364_01260 PF00005 ABC transporter BI364_01265 PF00459 Inositol monophosphatase family BI364_01270 PF00293 NUDIX domain BI364_01285 PF06508 Queuosine biosynthesis protein QueC BI364_01290 PF12849 PBP superfamily domain BI364_01295 PF00528 Binding-protein-dependent transport system inner membrane component BI364_01300 PF00528 Binding-protein-dependent transport system inner membrane component BI364_01325 PF00654 Voltage gated chloride channel BI364_01330 PF02594 Uncharacterised ACR, YggU family COG1872 BI364_01335 PF02325 YGGT family BI364_01340 PF03807 NADP oxidoreductase coenzyme F420-dependent BI364_01340 PF14748 Pyrroline-5-carboxylate reductase dimerisation BI364_01345 PF01168 Alanine racemase, N-terminal domain BI364_01350 PF00437 Type II/IV secretion system protein BI364_01355 PF00437 Type II/IV secretion system protein BI364_01360 PF00437 Type II/IV secretion system protein BI364_01365 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BI364_01365 PF00970 Oxidoreductase FAD-binding domain BI364_01370 PF01979 Amidohydrolase family BI364_01375 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BI364_01375 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BI364_01380 PF00156 Phosphoribosyl transferase domain BI364_01385 PF03652 Holliday junction resolvase BI364_01390 PF02622 Uncharacterized ACR, COG1678 BI364_01400 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BI364_01400 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BI364_01405 PF00072 Response regulator receiver domain BI364_01410 PF00072 Response regulator receiver domain BI364_01415 PF01584 CheW-like domain BI364_01420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_01420 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BI364_01425 PF02895 Signal transducing histidine kinase, homodimeric domain BI364_01425 PF01584 CheW-like domain BI364_01425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_01425 PF01627 Hpt domain BI364_01425 PF07194 P2 response regulator binding domain BI364_01435 PF04452 RNA methyltransferase BI364_01440 PF02219 Methylenetetrahydrofolate reductase BI364_01445 PF05221 S-adenosyl-L-homocysteine hydrolase BI364_01445 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BI364_01450 PF02773 S-adenosylmethionine synthetase, C-terminal domain BI364_01450 PF02772 S-adenosylmethionine synthetase, central domain BI364_01450 PF00438 S-adenosylmethionine synthetase, N-terminal domain BI364_01455 PF02779 Transketolase, pyrimidine binding domain BI364_01455 PF02780 Transketolase, C-terminal domain BI364_01455 PF00456 Transketolase, thiamine diphosphate binding domain BI364_01460 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BI364_01460 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BI364_01470 PF02887 Pyruvate kinase, alpha/beta domain BI364_01470 PF00224 Pyruvate kinase, barrel domain BI364_01475 PF01116 Fructose-bisphosphate aldolase class-II BI364_01485 PF01259 SAICAR synthetase BI364_01490 PF00731 AIR carboxylase BI364_01495 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BI364_01495 PF02222 ATP-grasp domain BI364_01500 PF03466 LysR substrate binding domain BI364_01500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_01505 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BI364_01505 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BI364_01510 PF00101 Ribulose bisphosphate carboxylase, small chain BI364_01550 PF00210 Ferritin-like domain BI364_01560 PF13614 AAA domain BI364_01570 PF08406 CbbQ/NirQ/NorQ C-terminal BI364_01570 PF07728 AAA domain (dynein-related subfamily) BI364_01595 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BI364_01605 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BI364_01605 PF00361 Proton-conducting membrane transporter BI364_01605 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BI364_01620 PF00034 Cytochrome c BI364_01630 PF00834 Ribulose-phosphate 3 epimerase family BI364_01635 PF13419 Haloacid dehalogenase-like hydrolase BI364_01640 PF00425 chorismate binding enzyme BI364_01640 PF04715 Anthranilate synthase component I, N terminal region BI364_01645 PF00117 Glutamine amidotransferase class-I BI364_01650 PF02885 Glycosyl transferase family, helical bundle domain BI364_01650 PF00591 Glycosyl transferase family, a/b domain BI364_01655 PF00218 Indole-3-glycerol phosphate synthase BI364_01660 PF02566 OsmC-like protein BI364_01670 PF02675 S-adenosylmethionine decarboxylase BI364_01675 PF03232 Ubiquinone biosynthesis protein COQ7 BI364_01695 PF00572 Ribosomal protein L13 BI364_01700 PF00380 Ribosomal protein S9/S16 BI364_01710 PF00267 Gram-negative porin BI364_01715 PF02754 Cysteine-rich domain BI364_01715 PF13183 4Fe-4S dicluster domain BI364_01720 PF00583 Acetyltransferase (GNAT) family BI364_01725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BI364_01750 PF01812 5-formyltetrahydrofolate cyclo-ligase family BI364_01760 PF05164 Cell division protein ZapA BI364_01780 PF05195 Aminopeptidase P, N-terminal domain BI364_01780 PF00557 Metallopeptidase family M24 BI364_01785 PF01494 FAD binding domain BI364_01790 PF01494 FAD binding domain BI364_01795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BI364_01820 PF01722 BolA-like protein BI364_01835 PF01612 3'-5' exonuclease BI364_01835 PF00570 HRDC domain BI364_01845 PF04093 rod shape-determining protein MreD BI364_01850 PF04085 rod shape-determining protein MreC BI364_01860 PF02686 Glu-tRNAGln amidotransferase C subunit BI364_01870 PF02934 GatB/GatE catalytic domain BI364_01870 PF02637 GatB domain BI364_01875 PF01430 Hsp33 protein BI364_01880 PF00899 ThiF family BI364_01885 PF17827 PrmC N-terminal domain BI364_01885 PF05175 Methyltransferase small domain BI364_01890 PF00472 RF-1 domain BI364_01890 PF03462 PCRF domain BI364_01895 PF01488 Shikimate / quinate 5-dehydrogenase BI364_01895 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BI364_01895 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BI364_01905 PF03550 Outer membrane lipoprotein LolB BI364_01910 PF00288 GHMP kinases N terminal domain BI364_01910 PF08544 GHMP kinases C terminal BI364_01920 PF14572 Phosphoribosyl synthetase-associated domain BI364_01920 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BI364_01925 PF01386 Ribosomal L25p family BI364_01925 PF14693 Ribosomal protein TL5, C-terminal domain BI364_01930 PF01195 Peptidyl-tRNA hydrolase BI364_01935 PF01926 50S ribosome-binding GTPase BI364_01935 PF06071 Protein of unknown function (DUF933) BI364_01940 PF00990 Diguanylate cyclase, GGDEF domain BI364_01940 PF00563 EAL domain BI364_01940 PF03707 Bacterial signalling protein N terminal repeat BI364_01955 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BI364_01955 PF12833 Helix-turn-helix domain BI364_01955 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BI364_01955 PF02805 Metal binding domain of Ada BI364_01965 PF00672 HAMP domain BI364_01965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_01975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_01975 PF03466 LysR substrate binding domain BI364_01985 PF03449 Transcription elongation factor, N-terminal BI364_01985 PF01272 Transcription elongation factor, GreA/GreB, C-term BI364_01990 PF13718 GNAT acetyltransferase 2 BI364_01990 PF08351 Domain of unknown function (DUF1726) BI364_01990 PF17176 tRNA-binding domain BI364_01990 PF05127 Helicase BI364_01995 PF00392 Bacterial regulatory proteins, gntR family BI364_01995 PF07729 FCD domain BI364_02000 PF01979 Amidohydrolase family BI364_02005 PF01979 Amidohydrolase family BI364_02025 PF07969 Amidohydrolase family BI364_02035 PF13474 SnoaL-like domain BI364_02065 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_02070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_02070 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_02075 PF01343 Peptidase family S49 BI364_02095 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BI364_02095 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BI364_02100 PF00115 Cytochrome C and Quinol oxidase polypeptide I BI364_02145 PF08281 Sigma-70, region 4 BI364_02145 PF04542 Sigma-70 region 2 BI364_02165 PF00578 AhpC/TSA family BI364_02185 PF02895 Signal transducing histidine kinase, homodimeric domain BI364_02185 PF01584 CheW-like domain BI364_02185 PF01627 Hpt domain BI364_02185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_02190 PF00072 Response regulator receiver domain BI364_02200 PF07977 FabA-like domain BI364_02215 PF00710 Asparaginase, N-terminal BI364_02215 PF17763 Glutaminase/Asparaginase C-terminal domain BI364_02220 PF01618 MotA/TolQ/ExbB proton channel family BI364_02225 PF02472 Biopolymer transport protein ExbD/TolR BI364_02235 PF02321 Outer membrane efflux protein BI364_02245 PF00873 AcrB/AcrD/AcrF family BI364_02275 PF01527 Transposase BI364_02280 PF01527 Transposase BI364_02320 PF00962 Adenosine/AMP deaminase BI364_02325 PF01425 Amidase BI364_02330 PF01266 FAD dependent oxidoreductase BI364_02345 PF01636 Phosphotransferase enzyme family BI364_02375 PF00471 Ribosomal protein L33 BI364_02380 PF00830 Ribosomal L28 family BI364_02390 PF12706 Beta-lactamase superfamily domain BI364_02410 PF02673 Bacitracin resistance protein BacA BI364_02415 PF08448 PAS fold BI364_02415 PF00990 Diguanylate cyclase, GGDEF domain BI364_02420 PF01966 HD domain BI364_02420 PF12627 Probable RNA and SrmB- binding site of polymerase A BI364_02420 PF01743 Poly A polymerase head domain BI364_02425 PF01370 NAD dependent epimerase/dehydratase family BI364_02430 PF01103 Surface antigen BI364_02430 PF07244 Surface antigen variable number repeat BI364_02435 PF04055 Radical SAM superfamily BI364_02435 PF06463 Molybdenum Cofactor Synthesis C BI364_02440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BI364_02440 PF00384 Molybdopterin oxidoreductase BI364_02440 PF01568 Molydopterin dinucleotide binding domain BI364_02445 PF13247 4Fe-4S dicluster domain BI364_02445 PF12800 4Fe-4S binding domain BI364_02450 PF04976 DMSO reductase anchor subunit (DmsC) BI364_02465 PF00085 Thioredoxin BI364_02470 PF07497 Rho termination factor, RNA-binding domain BI364_02470 PF07498 Rho termination factor, N-terminal domain BI364_02470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BI364_02475 PF00343 Carbohydrate phosphorylase BI364_02480 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BI364_02480 PF02843 Phosphoribosylglycinamide synthetase, C domain BI364_02480 PF02844 Phosphoribosylglycinamide synthetase, N domain BI364_02505 PF00990 Diguanylate cyclase, GGDEF domain BI364_02505 PF07694 5TMR of 5TMR-LYT BI364_02510 PF02142 MGS-like domain BI364_02510 PF01808 AICARFT/IMPCHase bienzyme BI364_02515 PF02954 Bacterial regulatory protein, Fis family BI364_02520 PF01207 Dihydrouridine synthase (Dus) BI364_02535 PF02785 Biotin carboxylase C-terminal domain BI364_02535 PF00289 Biotin carboxylase, N-terminal domain BI364_02535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BI364_02540 PF00364 Biotin-requiring enzyme BI364_02545 PF01220 Dehydroquinase class II BI364_02550 PF02683 Cytochrome C biogenesis protein transmembrane region BI364_02550 PF11412 Disulphide bond corrector protein DsbC BI364_02580 PF00166 Chaperonin 10 Kd subunit BI364_02585 PF00118 TCP-1/cpn60 chaperonin family BI364_02595 PF03793 PASTA domain BI364_02595 PF00069 Protein kinase domain BI364_02600 PF00437 Type II/IV secretion system protein BI364_02605 PF00437 Type II/IV secretion system protein BI364_02615 PF08281 Sigma-70, region 4 BI364_02615 PF04542 Sigma-70 region 2 BI364_02630 PF03710 Glutamate-ammonia ligase adenylyltransferase BI364_02630 PF08335 GlnD PII-uridylyltransferase BI364_02635 PF01063 Amino-transferase class IV BI364_02645 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BI364_02650 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BI364_02655 PF00535 Glycosyl transferase family 2 BI364_02660 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BI364_02665 PF00534 Glycosyl transferases group 1 BI364_02665 PF13439 Glycosyltransferase Family 4 BI364_02675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BI364_02685 PF00534 Glycosyl transferases group 1 BI364_02685 PF13439 Glycosyltransferase Family 4 BI364_02690 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BI364_02695 PF03279 Bacterial lipid A biosynthesis acyltransferase BI364_02705 PF01370 NAD dependent epimerase/dehydratase family BI364_02710 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BI364_02715 PF07977 FabA-like domain BI364_02720 PF02801 Beta-ketoacyl synthase, C-terminal domain BI364_02720 PF00109 Beta-ketoacyl synthase, N-terminal domain BI364_02735 PF03976 Polyphosphate kinase 2 (PPK2) BI364_02740 PF01964 Radical SAM ThiC family BI364_02740 PF13667 ThiC-associated domain BI364_02745 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system BI364_02780 PF00324 Amino acid permease BI364_02805 PF00248 Aldo/keto reductase family BI364_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_02815 PF00989 PAS fold BI364_02815 PF00512 His Kinase A (phospho-acceptor) domain BI364_02825 PF03707 Bacterial signalling protein N terminal repeat BI364_02825 PF00563 EAL domain BI364_02825 PF00990 Diguanylate cyclase, GGDEF domain BI364_02830 PF00563 EAL domain BI364_02830 PF00990 Diguanylate cyclase, GGDEF domain BI364_02830 PF03707 Bacterial signalling protein N terminal repeat BI364_02850 PF00267 Gram-negative porin BI364_02855 PF01814 Hemerythrin HHE cation binding domain BI364_02870 PF08298 PrkA AAA domain BI364_02870 PF06798 PrkA serine protein kinase C-terminal domain BI364_02875 PF04285 Protein of unknown function (DUF444) BI364_02880 PF04293 SpoVR like protein BI364_02890 PF01556 DnaJ C terminal domain BI364_02890 PF00226 DnaJ domain BI364_02905 PF00085 Thioredoxin BI364_02910 PF01037 Lrp/AsnC ligand binding domain BI364_02915 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BI364_02920 PF00171 Aldehyde dehydrogenase family BI364_02925 PF00202 Aminotransferase class-III BI364_02930 PF00291 Pyridoxal-phosphate dependent enzyme BI364_02935 PF02423 Ornithine cyclodeaminase/mu-crystallin family BI364_02940 PF00557 Metallopeptidase family M24 BI364_02940 PF01321 Creatinase/Prolidase N-terminal domain BI364_02950 PF13180 PDZ domain BI364_03000 PF03466 LysR substrate binding domain BI364_03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_03005 PF00578 AhpC/TSA family BI364_03010 PF00175 Oxidoreductase NAD-binding domain BI364_03010 PF00970 Oxidoreductase FAD-binding domain BI364_03020 PF04828 Glutathione-dependent formaldehyde-activating enzyme BI364_03025 PF12833 Helix-turn-helix domain BI364_03030 PF00472 RF-1 domain BI364_03045 PF03466 LysR substrate binding domain BI364_03045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_03055 PF00563 EAL domain BI364_03055 PF00990 Diguanylate cyclase, GGDEF domain BI364_03055 PF03707 Bacterial signalling protein N terminal repeat BI364_03060 PF00756 Putative esterase BI364_03065 PF08240 Alcohol dehydrogenase GroES-like domain BI364_03065 PF00107 Zinc-binding dehydrogenase BI364_03070 PF01741 Large-conductance mechanosensitive channel, MscL BI364_03075 PF18030 RimK PreATP-grasp domain BI364_03075 PF08443 RimK-like ATP-grasp domain BI364_03080 PF00990 Diguanylate cyclase, GGDEF domain BI364_03085 PF00990 Diguanylate cyclase, GGDEF domain BI364_03090 PF03707 Bacterial signalling protein N terminal repeat BI364_03090 PF00990 Diguanylate cyclase, GGDEF domain BI364_03090 PF00563 EAL domain BI364_03095 PF07690 Major Facilitator Superfamily BI364_03100 PF01810 LysE type translocator BI364_03105 PF00171 Aldehyde dehydrogenase family BI364_03110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BI364_03110 PF00205 Thiamine pyrophosphate enzyme, central domain BI364_03110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BI364_03115 PF01645 Conserved region in glutamate synthase BI364_03120 PF03707 Bacterial signalling protein N terminal repeat BI364_03120 PF00990 Diguanylate cyclase, GGDEF domain BI364_03120 PF00563 EAL domain BI364_03125 PF05726 Pirin C-terminal cupin domain BI364_03125 PF02678 Pirin BI364_03130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BI364_03155 PF03880 DbpA RNA binding domain BI364_03155 PF00270 DEAD/DEAH box helicase BI364_03155 PF00271 Helicase conserved C-terminal domain BI364_03160 PF00313 'Cold-shock' DNA-binding domain BI364_03170 PF16124 RecQ zinc-binding BI364_03170 PF00570 HRDC domain BI364_03170 PF09382 RQC domain BI364_03170 PF00270 DEAD/DEAH box helicase BI364_03170 PF00271 Helicase conserved C-terminal domain BI364_03225 PF00270 DEAD/DEAH box helicase BI364_03225 PF00271 Helicase conserved C-terminal domain BI364_03230 PF15887 Putative zinc-binding metallo-peptidase BI364_03230 PF10005 zinc-ribbon domain BI364_03240 PF14403 Circularly permuted ATP-grasp type 2 BI364_03260 PF17158 Membrane-associated sensor, integral membrane domain BI364_03260 PF00990 Diguanylate cyclase, GGDEF domain BI364_03265 PF03793 PASTA domain BI364_03265 PF00069 Protein kinase domain BI364_03270 PF17820 PDZ domain BI364_03270 PF01471 Putative peptidoglycan binding domain BI364_03270 PF03572 Peptidase family S41 BI364_03275 PF08669 Glycine cleavage T-protein C-terminal barrel domain BI364_03275 PF01571 Aminomethyltransferase folate-binding domain BI364_03280 PF01597 Glycine cleavage H-protein BI364_03285 PF02347 Glycine cleavage system P-protein BI364_03290 PF08534 Redoxin BI364_03295 PF02347 Glycine cleavage system P-protein BI364_03300 PF01219 Prokaryotic diacylglycerol kinase BI364_03310 PF01297 Zinc-uptake complex component A periplasmic BI364_03320 PF00005 ABC transporter BI364_03325 PF00950 ABC 3 transport family BI364_03340 PF07670 Nucleoside recognition BI364_03340 PF07664 Ferrous iron transport protein B C terminus BI364_03340 PF17910 FeoB cytosolic helical domain BI364_03340 PF02421 Ferrous iron transport protein B BI364_03350 PF01569 PAP2 superfamily BI364_03355 PF13439 Glycosyltransferase Family 4 BI364_03370 PF00581 Rhodanese-like domain BI364_03370 PF00899 ThiF family BI364_03380 PF04185 Phosphoesterase family BI364_03385 PF03190 Protein of unknown function, DUF255 BI364_03395 PF10672 S-adenosylmethionine-dependent methyltransferase BI364_03395 PF17785 PUA-like domain BI364_03400 PF01790 Prolipoprotein diacylglyceryl transferase BI364_03405 PF00303 Thymidylate synthase BI364_03410 PF00186 Dihydrofolate reductase BI364_03415 PF17200 Single Cache domain 2 BI364_03415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_03415 PF00672 HAMP domain BI364_03425 PF08668 HDOD domain BI364_03425 PF00563 EAL domain BI364_03440 PF00403 Heavy-metal-associated domain BI364_03445 PF13411 MerR HTH family regulatory protein BI364_03465 PF01510 N-acetylmuramoyl-L-alanine amidase BI364_03490 PF03707 Bacterial signalling protein N terminal repeat BI364_03490 PF00990 Diguanylate cyclase, GGDEF domain BI364_03490 PF00563 EAL domain BI364_03490 PF13188 PAS domain BI364_03495 PF02687 FtsX-like permease family BI364_03495 PF12704 MacB-like periplasmic core domain BI364_03495 PF00005 ABC transporter BI364_03500 PF12704 MacB-like periplasmic core domain BI364_03500 PF02687 FtsX-like permease family BI364_03500 PF00005 ABC transporter BI364_03505 PF00005 ABC transporter BI364_03505 PF02687 FtsX-like permease family BI364_03505 PF12704 MacB-like periplasmic core domain BI364_03510 PF13533 Biotin-lipoyl like BI364_03520 PF00459 Inositol monophosphatase family BI364_03525 PF00300 Histidine phosphatase superfamily (branch 1) BI364_03530 PF04377 Arginine-tRNA-protein transferase, C terminus BI364_03530 PF04376 Arginine-tRNA-protein transferase, N terminus BI364_03535 PF03358 NADPH-dependent FMN reductase BI364_03540 PF02574 Homocysteine S-methyltransferase BI364_03540 PF00809 Pterin binding enzyme BI364_03540 PF02965 Vitamin B12 dependent methionine synthase, activation domain BI364_03540 PF02607 B12 binding domain BI364_03540 PF02310 B12 binding domain BI364_03545 PF03352 Methyladenine glycosylase BI364_03545 PF00958 GMP synthase C terminal domain BI364_03545 PF13302 Acetyltransferase (GNAT) domain BI364_03545 PF13673 Acetyltransferase (GNAT) domain BI364_03545 PF00117 Glutamine amidotransferase class-I BI364_03555 PF05724 Thiopurine S-methyltransferase (TPMT) BI364_03580 PF02743 Cache domain BI364_03580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_03580 PF00672 HAMP domain BI364_03590 PF00873 AcrB/AcrD/AcrF family BI364_03610 PF01618 MotA/TolQ/ExbB proton channel family BI364_03615 PF00691 OmpA family BI364_03615 PF13677 Membrane MotB of proton-channel complex MotA/MotB BI364_03620 PF07690 Major Facilitator Superfamily BI364_03625 PF09335 SNARE associated Golgi protein BI364_03630 PF01545 Cation efflux family BI364_03635 PF00535 Glycosyl transferase family 2 BI364_03640 PF00654 Voltage gated chloride channel BI364_03645 PF01118 Semialdehyde dehydrogenase, NAD binding domain BI364_03645 PF02774 Semialdehyde dehydrogenase, dimerisation domain BI364_03660 PF01521 Iron-sulphur cluster biosynthesis BI364_03675 PF01551 Peptidase family M23 BI364_03675 PF04225 Opacity-associated protein A LysM-like domain BI364_03680 PF00579 tRNA synthetases class I (W and Y) BI364_03680 PF01479 S4 domain BI364_03710 PF01464 Transglycosylase SLT domain BI364_03710 PF10145 Phage-related minor tail protein BI364_03710 PF01551 Peptidase family M23 BI364_03735 PF00085 Thioredoxin BI364_03745 PF13276 HTH-like domain BI364_03745 PF00665 Integrase core domain BI364_03745 PF13333 Integrase core domain BI364_03780 PF10017 Histidine-specific methyltransferase, SAM-dependent BI364_03785 PF00072 Response regulator receiver domain BI364_03785 PF00486 Transcriptional regulatory protein, C terminal BI364_03790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_03790 PF00512 His Kinase A (phospho-acceptor) domain BI364_03790 PF00989 PAS fold BI364_03790 PF11808 Phosphate regulon sensor protein PhoR BI364_03795 PF02541 Ppx/GppA phosphatase family BI364_03805 PF02503 Polyphosphate kinase middle domain BI364_03805 PF13090 Polyphosphate kinase C-terminal domain 2 BI364_03805 PF17941 Polyphosphate kinase C-terminal domain 1 BI364_03805 PF13089 Polyphosphate kinase N-terminal domain BI364_03810 PF01895 PhoU domain BI364_03820 PF01142 tRNA pseudouridine synthase D (TruD) BI364_03825 PF02872 5'-nucleotidase, C-terminal domain BI364_03825 PF00149 Calcineurin-like phosphoesterase BI364_03830 PF13098 Thioredoxin-like domain BI364_03835 PF00005 ABC transporter BI364_03835 PF08402 TOBE domain BI364_03850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_03850 PF03459 TOBE domain BI364_03855 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BI364_03855 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BI364_03860 PF00202 Aminotransferase class-III BI364_03865 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BI364_03865 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BI364_03870 PF13537 Glutamine amidotransferase domain BI364_03870 PF00733 Asparagine synthase BI364_03875 PF00462 Glutaredoxin BI364_03880 PF00990 Diguanylate cyclase, GGDEF domain BI364_03880 PF00072 Response regulator receiver domain BI364_03885 PF00929 Exonuclease BI364_03890 PF17831 Pyruvate dehydrogenase E1 component middle domain BI364_03890 PF00456 Transketolase, thiamine diphosphate binding domain BI364_03895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BI364_03895 PF00364 Biotin-requiring enzyme BI364_03895 PF02817 e3 binding domain BI364_03900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_03900 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_03915 PF00691 OmpA family BI364_03920 PF00764 Arginosuccinate synthase BI364_03925 PF13396 Phospholipase_D-nuclease N-terminal BI364_03925 PF13091 PLD-like domain BI364_03940 PF02875 Mur ligase family, glutamate ligase domain BI364_03940 PF08245 Mur ligase middle domain BI364_03940 PF01225 Mur ligase family, catalytic domain BI364_03945 PF02441 Flavoprotein BI364_03955 PF00085 Thioredoxin BI364_03980 PF03776 Septum formation topological specificity factor MinE BI364_03985 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BI364_03990 PF03775 Septum formation inhibitor MinC, C-terminal domain BI364_03990 PF05209 Septum formation inhibitor MinC, N-terminal domain BI364_03995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BI364_04000 PF00583 Acetyltransferase (GNAT) family BI364_04000 PF00696 Amino acid kinase family BI364_04005 PF01546 Peptidase family M20/M25/M40 BI364_04005 PF07687 Peptidase dimerisation domain BI364_04015 PF18030 RimK PreATP-grasp domain BI364_04015 PF08443 RimK-like ATP-grasp domain BI364_04050 PF07687 Peptidase dimerisation domain BI364_04050 PF01546 Peptidase family M20/M25/M40 BI364_04055 PF01925 Sulfite exporter TauE/SafE BI364_04060 PF05872 Bacterial protein of unknown function (DUF853) BI364_04065 PF00990 Diguanylate cyclase, GGDEF domain BI364_04080 PF00117 Glutamine amidotransferase class-I BI364_04080 PF06418 CTP synthase N-terminus BI364_04095 PF00376 MerR family regulatory protein BI364_04095 PF09278 MerR, DNA binding BI364_04100 PF00313 'Cold-shock' DNA-binding domain BI364_04105 PF13419 Haloacid dehalogenase-like hydrolase BI364_04130 PF02542 YgbB family BI364_04135 PF00464 Serine hydroxymethyltransferase BI364_04140 PF03477 ATP cone domain BI364_04145 PF01872 RibD C-terminal domain BI364_04145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BI364_04150 PF00677 Lumazine binding domain BI364_04155 PF00925 GTP cyclohydrolase II BI364_04155 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BI364_04170 PF00994 Probable molybdopterin binding domain BI364_04170 PF03454 MoeA C-terminal region (domain IV) BI364_04170 PF03453 MoeA N-terminal region (domain I and II) BI364_04175 PF12804 MobA-like NTP transferase domain BI364_04185 PF00885 6,7-dimethyl-8-ribityllumazine synthase BI364_04190 PF01029 NusB family BI364_04195 PF02769 AIR synthase related protein, C-terminal domain BI364_04195 PF00586 AIR synthase related protein, N-terminal domain BI364_04200 PF04608 Phosphatidylglycerophosphatase A BI364_04205 PF00749 tRNA synthetases class I (E and Q), catalytic domain BI364_04240 PF04185 Phosphoesterase family BI364_04245 PF02743 Cache domain BI364_04245 PF00672 HAMP domain BI364_04245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_04250 PF04343 Protein of unknown function, DUF488 BI364_04260 PF17876 Cold shock domain BI364_04260 PF08461 Ribonuclease R winged-helix domain BI364_04260 PF08206 Ribonuclease B OB domain BI364_04260 PF00575 S1 RNA binding domain BI364_04260 PF00773 RNB domain BI364_04265 PF08032 RNA 2'-O ribose methyltransferase substrate binding BI364_04265 PF00588 SpoU rRNA Methylase family BI364_04270 PF17151 Periplasmic sensor domain BI364_04270 PF00990 Diguanylate cyclase, GGDEF domain BI364_04275 PF01250 Ribosomal protein S6 BI364_04280 PF01084 Ribosomal protein S18 BI364_04290 PF01281 Ribosomal protein L9, N-terminal domain BI364_04290 PF03948 Ribosomal protein L9, C-terminal domain BI364_04295 PF03796 DnaB-like helicase C terminal domain BI364_04295 PF00772 DnaB-like helicase N terminal domain BI364_04300 PF01168 Alanine racemase, N-terminal domain BI364_04300 PF00842 Alanine racemase, C-terminal domain BI364_04340 PF08406 CbbQ/NirQ/NorQ C-terminal BI364_04340 PF07728 AAA domain (dynein-related subfamily) BI364_04350 PF00850 Histone deacetylase domain BI364_04360 PF01713 Smr domain BI364_04360 PF00488 MutS domain V BI364_04370 PF02666 Phosphatidylserine decarboxylase BI364_04385 PF02350 UDP-N-acetylglucosamine 2-epimerase BI364_04395 PF00282 Pyridoxal-dependent decarboxylase conserved domain BI364_04400 PF13520 Amino acid permease BI364_04410 PF00920 Dehydratase family BI364_04415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BI364_04430 PF00271 Helicase conserved C-terminal domain BI364_04430 PF00270 DEAD/DEAH box helicase BI364_04435 PF00106 short chain dehydrogenase BI364_04490 PF01527 Transposase BI364_04500 PF02954 Bacterial regulatory protein, Fis family BI364_04500 PF00072 Response regulator receiver domain BI364_04500 PF00158 Sigma-54 interaction domain BI364_04515 PF02397 Bacterial sugar transferase BI364_04520 PF00311 Phosphoenolpyruvate carboxylase BI364_04530 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BI364_04530 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BI364_04535 PF00342 Phosphoglucose isomerase BI364_04540 PF01645 Conserved region in glutamate synthase BI364_04545 PF00072 Response regulator receiver domain BI364_04550 PF00512 His Kinase A (phospho-acceptor) domain BI364_04550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_04550 PF01627 Hpt domain BI364_04550 PF00072 Response regulator receiver domain BI364_04560 PF03069 Acetamidase/Formamidase family BI364_04570 PF00795 Carbon-nitrogen hydrolase BI364_04575 PF00092 von Willebrand factor type A domain BI364_04580 PF00392 Bacterial regulatory proteins, gntR family BI364_04580 PF07729 FCD domain BI364_04595 PF01618 MotA/TolQ/ExbB proton channel family BI364_04620 PF01609 Transposase DDE domain BI364_04620 PF05598 Transposase domain (DUF772) BI364_04625 PF08331 Domain of unknown function (DUF1730) BI364_04630 PF01256 Carbohydrate kinase BI364_04630 PF03853 YjeF-related protein N-terminus BI364_04635 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BI364_04640 PF11741 AMIN domain BI364_04640 PF01520 N-acetylmuramoyl-L-alanine amidase BI364_04655 PF17209 Hfq protein BI364_04660 PF13167 GTP-binding GTPase N-terminal BI364_04660 PF16360 GTP-binding GTPase Middle Region BI364_04660 PF01926 50S ribosome-binding GTPase BI364_04665 PF01145 SPFH domain / Band 7 family BI364_04670 PF01145 SPFH domain / Band 7 family BI364_04680 PF13393 Histidyl-tRNA synthetase BI364_04685 PF00709 Adenylosuccinate synthetase BI364_04690 PF00128 Alpha amylase, catalytic domain BI364_04710 PF00586 AIR synthase related protein, N-terminal domain BI364_04710 PF02769 AIR synthase related protein, C-terminal domain BI364_04715 PF00708 Acylphosphatase BI364_04715 PF17788 HypF Kae1-like domain BI364_04715 PF01300 Telomere recombination BI364_04715 PF07503 HypF finger BI364_04720 PF01924 Hydrogenase formation hypA family BI364_04725 PF01455 HupF/HypC family BI364_04730 PF03824 High-affinity nickel-transport protein BI364_04735 PF02954 Bacterial regulatory protein, Fis family BI364_04735 PF00158 Sigma-54 interaction domain BI364_04735 PF00072 Response regulator receiver domain BI364_04740 PF02492 CobW/HypB/UreG, nucleotide-binding domain BI364_04745 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BI364_04750 PF00374 Nickel-dependent hydrogenase BI364_04755 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE BI364_04755 PF00301 Rubredoxin BI364_04760 PF00301 Rubredoxin BI364_04765 PF04809 HupH hydrogenase expression protein, C-terminal conserved region BI364_04770 PF07449 Hydrogenase-1 expression protein HyaE BI364_04775 PF01455 HupF/HypC family BI364_04780 PF01750 Hydrogenase maturation protease BI364_04785 PF01292 Prokaryotic cytochrome b561 BI364_04790 PF00374 Nickel-dependent hydrogenase BI364_04795 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BI364_04795 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BI364_04800 PF00374 Nickel-dependent hydrogenase BI364_04810 PF00512 His Kinase A (phospho-acceptor) domain BI364_04810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_04835 PF00175 Oxidoreductase NAD-binding domain BI364_04835 PF00970 Oxidoreductase FAD-binding domain BI364_04835 PF00042 Globin BI364_04855 PF13520 Amino acid permease BI364_04860 PF01914 MarC family integral membrane protein BI364_04865 PF00171 Aldehyde dehydrogenase family BI364_04870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BI364_04870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BI364_04875 PF00202 Aminotransferase class-III BI364_04880 PF01381 Helix-turn-helix BI364_04880 PF07883 Cupin domain BI364_04885 PF00171 Aldehyde dehydrogenase family BI364_04895 PF01266 FAD dependent oxidoreductase BI364_04900 PF00120 Glutamine synthetase, catalytic domain BI364_04905 PF07722 Peptidase C26 BI364_04910 PF00120 Glutamine synthetase, catalytic domain BI364_04915 PF00202 Aminotransferase class-III BI364_04920 PF08402 TOBE domain BI364_04920 PF00005 ABC transporter BI364_04925 PF00528 Binding-protein-dependent transport system inner membrane component BI364_04935 PF13416 Bacterial extracellular solute-binding protein BI364_04945 PF00092 von Willebrand factor type A domain BI364_04950 PF08406 CbbQ/NirQ/NorQ C-terminal BI364_04950 PF07728 AAA domain (dynein-related subfamily) BI364_04955 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BI364_04955 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BI364_04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_04960 PF03466 LysR substrate binding domain BI364_04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_04970 PF03466 LysR substrate binding domain BI364_04975 PF00361 Proton-conducting membrane transporter BI364_04975 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BI364_04980 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BI364_05000 PF01979 Amidohydrolase family BI364_05010 PF00202 Aminotransferase class-III BI364_05015 PF00639 PPIC-type PPIASE domain BI364_05015 PF09312 SurA N-terminal domain BI364_05020 PF02665 Nitrate reductase gamma subunit BI364_05025 PF02613 Nitrate reductase delta subunit BI364_05030 PF13247 4Fe-4S dicluster domain BI364_05030 PF14711 Respiratory nitrate reductase beta C-terminal BI364_05035 PF00384 Molybdopterin oxidoreductase BI364_05035 PF14710 Respiratory nitrate reductase alpha N-terminal BI364_05035 PF01568 Molydopterin dinucleotide binding domain BI364_05040 PF07690 Major Facilitator Superfamily BI364_05045 PF13545 Crp-like helix-turn-helix domain BI364_05045 PF00027 Cyclic nucleotide-binding domain BI364_05100 PF03006 Haemolysin-III related BI364_05120 PF00563 EAL domain BI364_05120 PF03707 Bacterial signalling protein N terminal repeat BI364_05120 PF00990 Diguanylate cyclase, GGDEF domain BI364_05125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_05125 PF03466 LysR substrate binding domain BI364_05130 PF01507 Phosphoadenosine phosphosulfate reductase family BI364_05135 PF00175 Oxidoreductase NAD-binding domain BI364_05135 PF00258 Flavodoxin BI364_05135 PF00667 FAD binding domain BI364_05140 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BI364_05140 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BI364_05145 PF00578 AhpC/TSA family BI364_05145 PF10417 C-terminal domain of 1-Cys peroxiredoxin BI364_05150 PF14824 Sirohaem biosynthesis protein central BI364_05150 PF10414 Sirohaem synthase dimerisation region BI364_05150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BI364_05155 PF14306 PUA-like domain BI364_05155 PF01747 ATP-sulfurylase BI364_05165 PF01022 Bacterial regulatory protein, arsR family BI364_05175 PF14667 Polysaccharide biosynthesis C-terminal domain BI364_05175 PF01943 Polysaccharide biosynthesis protein BI364_05185 PF14306 PUA-like domain BI364_05185 PF01747 ATP-sulfurylase BI364_05190 PF00899 ThiF family BI364_05200 PF00005 ABC transporter BI364_05205 PF01522 Polysaccharide deacetylase BI364_05210 PF00255 Glutathione peroxidase BI364_05225 PF01569 PAP2 superfamily BI364_05235 PF00535 Glycosyl transferase family 2 BI364_05240 PF03707 Bacterial signalling protein N terminal repeat BI364_05240 PF00563 EAL domain BI364_05240 PF00990 Diguanylate cyclase, GGDEF domain BI364_05245 PF03861 ANTAR domain BI364_05245 PF08376 Nitrate and nitrite sensing BI364_05250 PF07690 Major Facilitator Superfamily BI364_05255 PF00005 ABC transporter BI364_05260 PF04324 BFD-like [2Fe-2S] binding domain BI364_05260 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BI364_05260 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BI364_05260 PF18267 Rubredoxin NAD+ reductase C-terminal domain BI364_05260 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_05265 PF00355 Rieske [2Fe-2S] domain BI364_05275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BI364_05275 PF14824 Sirohaem biosynthesis protein central BI364_05275 PF10414 Sirohaem synthase dimerisation region BI364_05280 PF10414 Sirohaem synthase dimerisation region BI364_05280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BI364_05280 PF14824 Sirohaem biosynthesis protein central BI364_05290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_05290 PF00672 HAMP domain BI364_05300 PF01152 Bacterial-like globin BI364_05310 PF02082 Transcriptional regulator BI364_05315 PF00534 Glycosyl transferases group 1 BI364_05315 PF13439 Glycosyltransferase Family 4 BI364_05325 PF01370 NAD dependent epimerase/dehydratase family BI364_05330 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BI364_05330 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BI364_05330 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BI364_05335 PF13098 Thioredoxin-like domain BI364_05340 PF06472 ABC transporter transmembrane region 2 BI364_05340 PF00005 ABC transporter BI364_05345 PF01264 Chorismate synthase BI364_05350 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BI364_05355 PF12832 MFS_1 like family BI364_05370 PF00005 ABC transporter BI364_05375 PF02405 Permease MlaE BI364_05380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_05385 PF00330 Aconitase family (aconitate hydratase) BI364_05390 PF00694 Aconitase C-terminal domain BI364_05405 PF01118 Semialdehyde dehydrogenase, NAD binding domain BI364_05405 PF02774 Semialdehyde dehydrogenase, dimerisation domain BI364_05410 PF01118 Semialdehyde dehydrogenase, NAD binding domain BI364_05410 PF02774 Semialdehyde dehydrogenase, dimerisation domain BI364_05420 PF01416 tRNA pseudouridine synthase BI364_05425 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BI364_05430 PF00291 Pyridoxal-phosphate dependent enzyme BI364_05435 PF00290 Tryptophan synthase alpha chain BI364_05440 PF01039 Carboxyl transferase domain BI364_05440 PF17848 Acetyl-coA carboxylase zinc finger domain BI364_05445 PF08245 Mur ligase middle domain BI364_05445 PF02875 Mur ligase family, glutamate ligase domain BI364_05455 PF02674 Colicin V production protein BI364_05460 PF00156 Phosphoribosyl transferase domain BI364_05470 PF00563 EAL domain BI364_05470 PF03707 Bacterial signalling protein N terminal repeat BI364_05470 PF00990 Diguanylate cyclase, GGDEF domain BI364_05480 PF01053 Cys/Met metabolism PLP-dependent enzyme BI364_05485 PF13660 Domain of unknown function (DUF4147) BI364_05485 PF05161 MOFRL family BI364_05500 PF00149 Calcineurin-like phosphoesterase BI364_05505 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BI364_05510 PF00749 tRNA synthetases class I (E and Q), catalytic domain BI364_05520 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BI364_05520 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BI364_05550 PF05697 Bacterial trigger factor protein (TF) BI364_05550 PF05698 Bacterial trigger factor protein (TF) C-terminus BI364_05550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BI364_05555 PF00574 Clp protease BI364_05560 PF07724 AAA domain (Cdc48 subfamily) BI364_05560 PF10431 C-terminal, D2-small domain, of ClpB protein BI364_05560 PF06689 ClpX C4-type zinc finger BI364_05565 PF00004 ATPase family associated with various cellular activities (AAA) BI364_05565 PF05362 Lon protease (S16) C-terminal proteolytic domain BI364_05565 PF02190 ATP-dependent protease La (LON) substrate-binding domain BI364_05570 PF00216 Bacterial DNA-binding protein BI364_05595 PF00158 Sigma-54 interaction domain BI364_05595 PF02954 Bacterial regulatory protein, Fis family BI364_05595 PF00072 Response regulator receiver domain BI364_05600 PF00072 Response regulator receiver domain BI364_05600 PF08448 PAS fold BI364_05600 PF00512 His Kinase A (phospho-acceptor) domain BI364_05600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_05600 PF13188 PAS domain BI364_05615 PF03793 PASTA domain BI364_05615 PF00069 Protein kinase domain BI364_05620 PF01476 LysM domain BI364_05620 PF01464 Transglycosylase SLT domain BI364_05630 PF00075 RNase H BI364_05635 PF00929 Exonuclease BI364_05640 PF01668 SmpB protein BI364_05645 PF00209 Sodium:neurotransmitter symporter family BI364_05650 PF03364 Polyketide cyclase / dehydrase and lipid transport BI364_05655 PF03658 RnfH family Ubiquitin BI364_05660 PF04355 SmpA / OmlA family BI364_05665 PF01475 Ferric uptake regulator family BI364_05675 PF01513 ATP-NAD kinase BI364_05685 PF01025 GrpE BI364_05690 PF00012 Hsp70 protein BI364_05695 PF00226 DnaJ domain BI364_05695 PF00684 DnaJ central domain BI364_05695 PF01556 DnaJ C terminal domain BI364_05700 PF05173 Dihydrodipicolinate reductase, C-terminus BI364_05700 PF01113 Dihydrodipicolinate reductase, N-terminus BI364_05705 PF00117 Glutamine amidotransferase class-I BI364_05705 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BI364_05710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BI364_05710 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BI364_05710 PF02142 MGS-like domain BI364_05715 PF03449 Transcription elongation factor, N-terminal BI364_05715 PF01272 Transcription elongation factor, GreA/GreB, C-term BI364_05720 PF01985 CRS1 / YhbY (CRM) domain BI364_05725 PF01728 FtsJ-like methyltransferase BI364_05730 PF00004 ATPase family associated with various cellular activities (AAA) BI364_05730 PF17862 AAA+ lid domain BI364_05730 PF01434 Peptidase family M41 BI364_05730 PF06480 FtsH Extracellular BI364_05735 PF00809 Pterin binding enzyme BI364_05740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BI364_05740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BI364_05740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BI364_05740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BI364_05745 PF00121 Triosephosphate isomerase BI364_05750 PF03840 Preprotein translocase SecG subunit BI364_05760 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BI364_05765 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BI364_05770 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BI364_05775 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BI364_05785 PF10531 SLBB domain BI364_05785 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BI364_05785 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BI364_05795 PF00146 NADH dehydrogenase BI364_05800 PF12838 4Fe-4S dicluster domain BI364_05805 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BI364_05810 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BI364_05815 PF00361 Proton-conducting membrane transporter BI364_05815 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BI364_05820 PF00361 Proton-conducting membrane transporter BI364_05820 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BI364_05840 PF02576 RimP N-terminal domain BI364_05840 PF17384 RimP C-terminal SH3 domain BI364_05845 PF00575 S1 RNA binding domain BI364_05845 PF08529 NusA N-terminal domain BI364_05845 PF13184 NusA-like KH domain BI364_05850 PF11987 Translation-initiation factor 2 BI364_05850 PF08364 Bacterial translation initiation factor IF-2 associated region BI364_05850 PF00009 Elongation factor Tu GTP binding domain BI364_05850 PF04760 Translation initiation factor IF-2, N-terminal region BI364_05850 PF03144 Elongation factor Tu domain 2 BI364_05855 PF02033 Ribosome-binding factor A BI364_05860 PF01509 TruB family pseudouridylate synthase (N terminal domain) BI364_05860 PF16198 tRNA pseudouridylate synthase B C-terminal domain BI364_05860 PF09157 Pseudouridine synthase II TruB, C-terminal BI364_05870 PF01979 Amidohydrolase family BI364_05875 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BI364_05875 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BI364_05890 PF01557 Fumarylacetoacetate (FAA) hydrolase family BI364_05900 PF00106 short chain dehydrogenase BI364_05905 PF00857 Isochorismatase family BI364_05910 PF03992 Antibiotic biosynthesis monooxygenase BI364_05915 PF04073 Aminoacyl-tRNA editing domain BI364_05930 PF12170 DNA polymerase III tau subunit V interacting with alpha BI364_05930 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BI364_05930 PF12169 DNA polymerase III subunits gamma and tau domain III BI364_05935 PF02575 YbaB/EbfC DNA-binding family BI364_05940 PF13662 Toprim domain BI364_05940 PF02132 RecR protein BI364_05955 PF03193 RsgA GTPase BI364_05960 PF01329 Pterin 4 alpha carbinolamine dehydratase BI364_05965 PF16491 CAAX prenyl protease N-terminal, five membrane helices BI364_05965 PF01435 Peptidase family M48 BI364_05970 PF01381 Helix-turn-helix BI364_05985 PF00929 Exonuclease BI364_05990 PF00581 Rhodanese-like domain BI364_05995 PF02910 Fumarate reductase flavoprotein C-term BI364_05995 PF00890 FAD binding domain BI364_06000 PF04542 Sigma-70 region 2 BI364_06000 PF08281 Sigma-70, region 4 BI364_06020 PF06421 GTP-binding protein LepA C-terminus BI364_06020 PF00679 Elongation factor G C-terminus BI364_06020 PF00009 Elongation factor Tu GTP binding domain BI364_06025 PF10502 Signal peptidase, peptidase S26 BI364_06035 PF14622 Ribonuclease-III-like BI364_06035 PF00035 Double-stranded RNA binding motif BI364_06040 PF01926 50S ribosome-binding GTPase BI364_06040 PF07650 KH domain BI364_06045 PF02565 Recombination protein O C terminal BI364_06045 PF11967 Recombination protein O N terminal BI364_06050 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BI364_06055 PF01648 4'-phosphopantetheinyl transferase superfamily BI364_06060 PF00291 Pyridoxal-phosphate dependent enzyme BI364_06070 PF05958 tRNA (Uracil-5-)-methyltransferase BI364_06075 PF00583 Acetyltransferase (GNAT) family BI364_06090 PF00994 Probable molybdopterin binding domain BI364_06090 PF03453 MoeA N-terminal region (domain I and II) BI364_06090 PF03454 MoeA C-terminal region (domain IV) BI364_06095 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BI364_06105 PF01145 SPFH domain / Band 7 family BI364_06105 PF16200 C-terminal region of band_7 BI364_06110 PF00589 Phage integrase family BI364_06110 PF02899 Phage integrase, N-terminal SAM-like domain BI364_06115 PF13098 Thioredoxin-like domain BI364_06115 PF10411 Disulfide bond isomerase protein N-terminus BI364_06120 PF06719 AraC-type transcriptional regulator N-terminus BI364_06120 PF12833 Helix-turn-helix domain BI364_06125 PF00107 Zinc-binding dehydrogenase BI364_06125 PF08240 Alcohol dehydrogenase GroES-like domain BI364_06130 PF02384 N-6 DNA Methylase BI364_06130 PF12161 HsdM N-terminal domain BI364_06135 PF01420 Type I restriction modification DNA specificity domain BI364_06140 PF08463 EcoEI R protein C-terminal BI364_06140 PF00271 Helicase conserved C-terminal domain BI364_06140 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BI364_06140 PF04851 Type III restriction enzyme, res subunit BI364_06150 PF02311 AraC-like ligand binding domain BI364_06150 PF12833 Helix-turn-helix domain BI364_06155 PF07690 Major Facilitator Superfamily BI364_06160 PF00085 Thioredoxin BI364_06165 PF04305 Protein of unknown function (DUF455) BI364_06170 PF00204 DNA gyrase B BI364_06170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_06170 PF00986 DNA gyrase B subunit, carboxyl terminus BI364_06170 PF01751 Toprim domain BI364_06180 PF00521 DNA gyrase/topoisomerase IV, subunit A BI364_06180 PF03989 DNA gyrase C-terminal domain, beta-propeller BI364_06185 PF01435 Peptidase family M48 BI364_06190 PF13193 AMP-binding enzyme C-terminal domain BI364_06190 PF00501 AMP-binding enzyme BI364_06195 PF02803 Thiolase, C-terminal domain BI364_06195 PF00108 Thiolase, N-terminal domain BI364_06205 PF05231 MASE1 BI364_06205 PF00563 EAL domain BI364_06215 PF04055 Radical SAM superfamily BI364_06220 PF09285 Elongation factor P, C-terminal BI364_06220 PF01132 Elongation factor P (EF-P) OB domain BI364_06220 PF08207 Elongation factor P (EF-P) KOW-like domain BI364_06225 PF00152 tRNA synthetases class II (D, K and N) BI364_06230 PF02666 Phosphatidylserine decarboxylase BI364_06235 PF05175 Methyltransferase small domain BI364_06240 PF00639 PPIC-type PPIASE domain BI364_06245 PF03795 YCII-related domain BI364_06250 PF04279 Intracellular septation protein A BI364_06255 PF01300 Telomere recombination BI364_06260 PF02163 Peptidase family M50 BI364_06265 PF00579 tRNA synthetases class I (W and Y) BI364_06270 PF02616 Segregation and condensation protein ScpA BI364_06275 PF04079 Segregation and condensation complex subunit ScpB BI364_06285 PF00994 Probable molybdopterin binding domain BI364_06290 PF01479 S4 domain BI364_06290 PF00849 RNA pseudouridylate synthase BI364_06310 PF00106 short chain dehydrogenase BI364_06315 PF01593 Flavin containing amine oxidoreductase BI364_06330 PF13419 Haloacid dehalogenase-like hydrolase BI364_06340 PF00107 Zinc-binding dehydrogenase BI364_06340 PF08240 Alcohol dehydrogenase GroES-like domain BI364_06345 PF01979 Amidohydrolase family BI364_06350 PF01008 Initiation factor 2 subunit family BI364_06355 PF00521 DNA gyrase/topoisomerase IV, subunit A BI364_06355 PF03989 DNA gyrase C-terminal domain, beta-propeller BI364_06360 PF00266 Aminotransferase class-V BI364_06365 PF01842 ACT domain BI364_06365 PF01817 Chorismate mutase type II BI364_06365 PF00800 Prephenate dehydratase BI364_06370 PF02153 Prephenate dehydrogenase BI364_06370 PF01842 ACT domain BI364_06380 PF02224 Cytidylate kinase BI364_06385 PF00575 S1 RNA binding domain BI364_06390 PF00216 Bacterial DNA-binding protein BI364_06400 PF18073 Rubredoxin metal binding domain BI364_06405 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BI364_06410 PF00483 Nucleotidyl transferase BI364_06420 PF10609 NUBPL iron-transfer P-loop NTPase BI364_06425 PF03707 Bacterial signalling protein N terminal repeat BI364_06425 PF00990 Diguanylate cyclase, GGDEF domain BI364_06425 PF00563 EAL domain BI364_06430 PF00989 PAS fold BI364_06430 PF00512 His Kinase A (phospho-acceptor) domain BI364_06430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_06490 PF04143 Sulphur transport BI364_06500 PF02954 Bacterial regulatory protein, Fis family BI364_06500 PF00158 Sigma-54 interaction domain BI364_06500 PF00072 Response regulator receiver domain BI364_06505 PF00512 His Kinase A (phospho-acceptor) domain BI364_06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_06515 PF00916 Sulfate permease family BI364_06515 PF01740 STAS domain BI364_06520 PF00877 NlpC/P60 family BI364_06530 PF14814 Bifunctional transglycosylase second domain BI364_06530 PF00905 Penicillin binding protein transpeptidase domain BI364_06530 PF00912 Transglycosylase BI364_06540 PF04851 Type III restriction enzyme, res subunit BI364_06540 PF13307 Helicase C-terminal domain BI364_06545 PF00814 Glycoprotease family BI364_06565 PF00990 Diguanylate cyclase, GGDEF domain BI364_06580 PF00005 ABC transporter BI364_06585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BI364_06590 PF03239 Iron permease FTR1 family BI364_06600 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BI364_06600 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BI364_06605 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BI364_06605 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BI364_06625 PF00107 Zinc-binding dehydrogenase BI364_06625 PF08240 Alcohol dehydrogenase GroES-like domain BI364_06630 PF00440 Bacterial regulatory proteins, tetR family BI364_06635 PF00343 Carbohydrate phosphorylase BI364_06635 PF11897 Protein of unknown function (DUF3417) BI364_06640 PF00294 pfkB family carbohydrate kinase BI364_06645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BI364_06645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BI364_06645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BI364_06645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BI364_06650 PF02887 Pyruvate kinase, alpha/beta domain BI364_06650 PF00224 Pyruvate kinase, barrel domain BI364_06650 PF00391 PEP-utilising enzyme, mobile domain BI364_06655 PF13806 Rieske-like [2Fe-2S] domain BI364_06655 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_06655 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BI364_06655 PF18267 Rubredoxin NAD+ reductase C-terminal domain BI364_06655 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BI364_06655 PF04324 BFD-like [2Fe-2S] binding domain BI364_06670 PF00582 Universal stress protein family BI364_06695 PF13193 AMP-binding enzyme C-terminal domain BI364_06695 PF16177 Acetyl-coenzyme A synthetase N-terminus BI364_06695 PF00501 AMP-binding enzyme BI364_06700 PF00300 Histidine phosphatase superfamily (branch 1) BI364_06710 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BI364_06710 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BI364_06710 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BI364_06720 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BI364_06720 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BI364_06720 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BI364_06725 PF00664 ABC transporter transmembrane region BI364_06725 PF00005 ABC transporter BI364_06730 PF13439 Glycosyltransferase Family 4 BI364_06730 PF00534 Glycosyl transferases group 1 BI364_06735 PF13439 Glycosyltransferase Family 4 BI364_06735 PF00534 Glycosyl transferases group 1 BI364_06745 PF00155 Aminotransferase class I and II BI364_06755 PF00488 MutS domain V BI364_06755 PF01713 Smr domain BI364_06760 PF01027 Inhibitor of apoptosis-promoting Bax1 BI364_06765 PF07690 Major Facilitator Superfamily BI364_06775 PF00589 Phage integrase family BI364_06805 PF05598 Transposase domain (DUF772) BI364_06805 PF01609 Transposase DDE domain BI364_06865 PF07282 Putative transposase DNA-binding domain BI364_06865 PF01385 Probable transposase BI364_06865 PF12323 Helix-turn-helix domain BI364_06895 PF01385 Probable transposase BI364_06895 PF07282 Putative transposase DNA-binding domain BI364_06895 PF12323 Helix-turn-helix domain BI364_06900 PF01797 Transposase IS200 like BI364_06915 PF01464 Transglycosylase SLT domain BI364_06950 PF01797 Transposase IS200 like BI364_06955 PF00271 Helicase conserved C-terminal domain BI364_06955 PF00270 DEAD/DEAH box helicase BI364_06955 PF17191 RecG wedge domain BI364_06965 PF14622 Ribonuclease-III-like BI364_06965 PF00035 Double-stranded RNA binding motif BI364_06970 PF00437 Type II/IV secretion system protein BI364_06985 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BI364_07030 PF03743 Bacterial conjugation TrbI-like protein BI364_07040 PF00263 Bacterial type II and III secretion system protein BI364_07040 PF03958 Bacterial type II/III secretion system short domain BI364_07055 PF00437 Type II/IV secretion system protein BI364_07065 PF08334 Type II secretion system (T2SS), protein G BI364_07065 PF07963 Prokaryotic N-terminal methylation motif BI364_07075 PF00437 Type II/IV secretion system protein BI364_07080 PF07963 Prokaryotic N-terminal methylation motif BI364_07080 PF11612 Type II secretion system (T2SS), protein J BI364_07085 PF00437 Type II/IV secretion system protein BI364_07125 PF01381 Helix-turn-helix BI364_07130 PF05973 Phage derived protein Gp49-like (DUF891) BI364_07190 PF00563 EAL domain BI364_07190 PF13188 PAS domain BI364_07190 PF03707 Bacterial signalling protein N terminal repeat BI364_07190 PF00990 Diguanylate cyclase, GGDEF domain BI364_07195 PF12729 Four helix bundle sensory module for signal transduction BI364_07195 PF00672 HAMP domain BI364_07195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_07200 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BI364_07205 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system BI364_07210 PF00216 Bacterial DNA-binding protein BI364_07220 PF01695 IstB-like ATP binding protein BI364_07225 PF00665 Integrase core domain BI364_07245 PF17827 PrmC N-terminal domain BI364_07245 PF05175 Methyltransferase small domain BI364_07255 PF03477 ATP cone domain BI364_07255 PF00317 Ribonucleotide reductase, all-alpha domain BI364_07255 PF02867 Ribonucleotide reductase, barrel domain BI364_07265 PF00436 Single-strand binding protein family BI364_07305 PF13361 UvrD-like helicase C-terminal domain BI364_07305 PF00580 UvrD/REP helicase N-terminal domain BI364_07365 PF13333 Integrase core domain BI364_07365 PF00665 Integrase core domain BI364_07365 PF13276 HTH-like domain BI364_07390 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BI364_07390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BI364_07405 PF00267 Gram-negative porin BI364_07410 PF01609 Transposase DDE domain BI364_07410 PF05598 Transposase domain (DUF772) BI364_07415 PF01814 Hemerythrin HHE cation binding domain BI364_07420 PF05598 Transposase domain (DUF772) BI364_07420 PF01609 Transposase DDE domain BI364_07425 PF00672 HAMP domain BI364_07425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_07435 PF03466 LysR substrate binding domain BI364_07435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_07440 PF01925 Sulfite exporter TauE/SafE BI364_07445 PF01507 Phosphoadenosine phosphosulfate reductase family BI364_07455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BI364_07455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BI364_07460 PF00578 AhpC/TSA family BI364_07460 PF10417 C-terminal domain of 1-Cys peroxiredoxin BI364_07465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BI364_07465 PF14824 Sirohaem biosynthesis protein central BI364_07465 PF10414 Sirohaem synthase dimerisation region BI364_07470 PF01507 Phosphoadenosine phosphosulfate reductase family BI364_07475 PF00009 Elongation factor Tu GTP binding domain BI364_07505 PF07282 Putative transposase DNA-binding domain BI364_07505 PF01385 Probable transposase BI364_07505 PF12323 Helix-turn-helix domain BI364_07520 PF13333 Integrase core domain BI364_07520 PF13276 HTH-like domain BI364_07520 PF00665 Integrase core domain BI364_07525 PF01527 Transposase BI364_07535 PF00665 Integrase core domain BI364_07540 PF01695 IstB-like ATP binding protein BI364_07565 PF07042 TrfA protein BI364_07580 PF00155 Aminotransferase class I and II BI364_07585 PF17757 UvrB interaction domain BI364_07585 PF02151 UvrB/uvrC motif BI364_07585 PF04851 Type III restriction enzyme, res subunit BI364_07585 PF00271 Helicase conserved C-terminal domain BI364_07585 PF12344 Ultra-violet resistance protein B BI364_07595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BI364_07595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BI364_07595 PF02824 TGS domain BI364_07595 PF03129 Anticodon binding domain BI364_07600 PF00707 Translation initiation factor IF-3, C-terminal domain BI364_07600 PF05198 Translation initiation factor IF-3, N-terminal domain BI364_07605 PF01632 Ribosomal protein L35 BI364_07610 PF00453 Ribosomal protein L20 BI364_07615 PF01409 tRNA synthetases class II core domain (F) BI364_07615 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BI364_07620 PF03484 tRNA synthetase B5 domain BI364_07620 PF03483 B3/4 domain BI364_07620 PF03147 Ferredoxin-fold anticodon binding domain BI364_07620 PF01588 Putative tRNA binding domain BI364_07620 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BI364_07625 PF00216 Bacterial DNA-binding protein BI364_07635 PF00312 Ribosomal protein S15 BI364_07640 PF01138 3' exoribonuclease family, domain 1 BI364_07640 PF03725 3' exoribonuclease family, domain 2 BI364_07640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BI364_07640 PF00575 S1 RNA binding domain BI364_07640 PF00013 KH domain BI364_07645 PF00561 alpha/beta hydrolase fold BI364_07655 PF00127 Copper binding proteins, plastocyanin/azurin family BI364_07660 PF01116 Fructose-bisphosphate aldolase class-II BI364_07675 PF09339 IclR helix-turn-helix domain BI364_07675 PF01614 Bacterial transcriptional regulator BI364_07705 PF02798 Glutathione S-transferase, N-terminal domain BI364_07710 PF07804 HipA-like C-terminal domain BI364_07710 PF13657 HipA N-terminal domain BI364_07715 PF01381 Helix-turn-helix BI364_07750 PF02769 AIR synthase related protein, C-terminal domain BI364_07750 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BI364_07750 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BI364_07770 PF13472 GDSL-like Lipase/Acylhydrolase family BI364_07775 PF00005 ABC transporter BI364_07785 PF13291 ACT domain BI364_07785 PF02824 TGS domain BI364_07785 PF04607 Region found in RelA / SpoT proteins BI364_07790 PF00561 alpha/beta hydrolase fold BI364_07805 PF05275 Copper resistance protein B precursor (CopB) BI364_07810 PF07732 Multicopper oxidase BI364_07810 PF07731 Multicopper oxidase BI364_07810 PF00394 Multicopper oxidase BI364_07815 PF00072 Response regulator receiver domain BI364_07815 PF00486 Transcriptional regulatory protein, C terminal BI364_07820 PF00512 His Kinase A (phospho-acceptor) domain BI364_07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_07820 PF00672 HAMP domain BI364_07850 PF02472 Biopolymer transport protein ExbD/TolR BI364_07855 PF01618 MotA/TolQ/ExbB proton channel family BI364_07880 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BI364_07880 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BI364_07885 PF09335 SNARE associated Golgi protein BI364_07890 PF00730 HhH-GPD superfamily base excision DNA repair protein BI364_07900 PF08494 DEAD/H associated BI364_07900 PF00270 DEAD/DEAH box helicase BI364_07900 PF00271 Helicase conserved C-terminal domain BI364_07905 PF00563 EAL domain BI364_07905 PF00990 Diguanylate cyclase, GGDEF domain BI364_07905 PF03707 Bacterial signalling protein N terminal repeat BI364_07910 PF00990 Diguanylate cyclase, GGDEF domain BI364_07910 PF00563 EAL domain BI364_07910 PF03707 Bacterial signalling protein N terminal repeat BI364_07915 PF00563 EAL domain BI364_07915 PF00990 Diguanylate cyclase, GGDEF domain BI364_07915 PF00072 Response regulator receiver domain BI364_07920 PF00512 His Kinase A (phospho-acceptor) domain BI364_07920 PF13426 PAS domain BI364_07920 PF00672 HAMP domain BI364_07920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_07925 PF00990 Diguanylate cyclase, GGDEF domain BI364_07925 PF00072 Response regulator receiver domain BI364_07930 PF00563 EAL domain BI364_07930 PF00990 Diguanylate cyclase, GGDEF domain BI364_07930 PF00072 Response regulator receiver domain BI364_07955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_07955 PF00672 HAMP domain BI364_07955 PF00512 His Kinase A (phospho-acceptor) domain BI364_07960 PF00486 Transcriptional regulatory protein, C terminal BI364_07960 PF00072 Response regulator receiver domain BI364_07975 PF13533 Biotin-lipoyl like BI364_07980 PF00873 AcrB/AcrD/AcrF family BI364_07990 PF09137 Glucodextranase, domain N BI364_07990 PF00723 Glycosyl hydrolases family 15 BI364_08000 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BI364_08000 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BI364_08005 PF17820 PDZ domain BI364_08005 PF13180 PDZ domain BI364_08020 PF00664 ABC transporter transmembrane region BI364_08020 PF00005 ABC transporter BI364_08025 PF00664 ABC transporter transmembrane region BI364_08025 PF00005 ABC transporter BI364_08030 PF02954 Bacterial regulatory protein, Fis family BI364_08030 PF00072 Response regulator receiver domain BI364_08030 PF00158 Sigma-54 interaction domain BI364_08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_08035 PF02743 Cache domain BI364_08035 PF00512 His Kinase A (phospho-acceptor) domain BI364_08045 PF01654 Cytochrome bd terminal oxidase subunit I BI364_08050 PF01040 UbiA prenyltransferase family BI364_08065 PF00510 Cytochrome c oxidase subunit III BI364_08070 PF00115 Cytochrome C and Quinol oxidase polypeptide I BI364_08075 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BI364_08075 PF06481 COX Aromatic Rich Motif BI364_08085 PF04551 GcpE protein BI364_08100 PF11700 Vacuole effluxer Atg22 like BI364_08105 PF12792 CSS motif domain associated with EAL BI364_08105 PF00563 EAL domain BI364_08110 PF00749 tRNA synthetases class I (E and Q), catalytic domain BI364_08115 PF01258 Prokaryotic dksA/traR C4-type zinc finger BI364_08125 PF13419 Haloacid dehalogenase-like hydrolase BI364_08130 PF02601 Exonuclease VII, large subunit BI364_08130 PF13742 OB-fold nucleic acid binding domain BI364_08135 PF00571 CBS domain BI364_08135 PF00478 IMP dehydrogenase / GMP reductase domain BI364_08145 PF14437 MafB19-like deaminase BI364_08150 PF00497 Bacterial extracellular solute-binding proteins, family 3 BI364_08150 PF01464 Transglycosylase SLT domain BI364_08165 PF03707 Bacterial signalling protein N terminal repeat BI364_08165 PF00563 EAL domain BI364_08165 PF00990 Diguanylate cyclase, GGDEF domain BI364_08170 PF00990 Diguanylate cyclase, GGDEF domain BI364_08170 PF00563 EAL domain BI364_08170 PF03707 Bacterial signalling protein N terminal repeat BI364_08200 PF00941 FAD binding domain in molybdopterin dehydrogenase BI364_08200 PF03450 CO dehydrogenase flavoprotein C-terminal domain BI364_08225 PF05114 Protein of unknown function (DUF692) BI364_08270 PF13419 Haloacid dehalogenase-like hydrolase BI364_08285 PF17922 Tetracyclin repressor-like, C-terminal domain BI364_08285 PF00440 Bacterial regulatory proteins, tetR family BI364_08290 PF12867 DinB superfamily BI364_08290 PF03781 Sulfatase-modifying factor enzyme 1 BI364_08295 PF10017 Histidine-specific methyltransferase, SAM-dependent BI364_08330 PF01527 Transposase BI364_08340 PF01566 Natural resistance-associated macrophage protein BI364_08340 PF03358 NADPH-dependent FMN reductase BI364_08345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_08345 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_08355 PF07690 Major Facilitator Superfamily BI364_08365 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_08365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_08365 PF00403 Heavy-metal-associated domain BI364_08410 PF02806 Alpha amylase, C-terminal all-beta domain BI364_08410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BI364_08410 PF00128 Alpha amylase, catalytic domain BI364_08415 PF00483 Nucleotidyl transferase BI364_08425 PF02446 4-alpha-glucanotransferase BI364_08430 PF00202 Aminotransferase class-III BI364_08435 PF01451 Low molecular weight phosphotyrosine protein phosphatase BI364_08450 PF00849 RNA pseudouridylate synthase BI364_08450 PF01479 S4 domain BI364_08455 PF13419 Haloacid dehalogenase-like hydrolase BI364_08460 PF02545 Maf-like protein BI364_08465 PF00364 Biotin-requiring enzyme BI364_08465 PF02436 Conserved carboxylase domain BI364_08465 PF00682 HMGL-like BI364_08470 PF00289 Biotin carboxylase, N-terminal domain BI364_08470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BI364_08470 PF02785 Biotin carboxylase C-terminal domain BI364_08475 PF02620 Large ribosomal RNA subunit accumulation protein YceD BI364_08480 PF01783 Ribosomal L32p protein family BI364_08485 PF02504 Fatty acid synthesis protein BI364_08490 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BI364_08490 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BI364_08500 PF03167 Uracil DNA glycosylase superfamily BI364_08505 PF02151 UvrB/uvrC motif BI364_08505 PF08459 UvrC Helix-hairpin-helix N-terminal BI364_08505 PF01541 GIY-YIG catalytic domain BI364_08510 PF01066 CDP-alcohol phosphatidyltransferase BI364_08535 PF00924 Mechanosensitive ion channel BI364_08540 PF01734 Patatin-like phospholipase BI364_08550 PF11734 TilS substrate C-terminal domain BI364_08550 PF01171 PP-loop family BI364_08550 PF00156 Phosphoribosyl transferase domain BI364_08555 PF01048 Phosphorylase superfamily BI364_08560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BI364_08570 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_08575 PF09397 Ftsk gamma domain BI364_08575 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BI364_08575 PF17854 FtsK alpha domain BI364_08575 PF01580 FtsK/SpoIIIE family BI364_08580 PF03548 Outer membrane lipoprotein carrier protein LolA BI364_08585 PF00004 ATPase family associated with various cellular activities (AAA) BI364_08585 PF16193 AAA C-terminal domain BI364_08585 PF12002 MgsA AAA+ ATPase C terminal BI364_08600 PF17757 UvrB interaction domain BI364_08600 PF00271 Helicase conserved C-terminal domain BI364_08600 PF03461 TRCF domain BI364_08600 PF02559 CarD-like/TRCF domain BI364_08600 PF00270 DEAD/DEAH box helicase BI364_08610 PF04371 Porphyromonas-type peptidyl-arginine deiminase BI364_08620 PF12704 MacB-like periplasmic core domain BI364_08620 PF02687 FtsX-like permease family BI364_08625 PF00005 ABC transporter BI364_08635 PF03772 Competence protein BI364_08635 PF00753 Metallo-beta-lactamase superfamily BI364_08640 PF01566 Natural resistance-associated macrophage protein BI364_08645 PF01618 MotA/TolQ/ExbB proton channel family BI364_08650 PF02472 Biopolymer transport protein ExbD/TolR BI364_08655 PF00664 ABC transporter transmembrane region BI364_08655 PF00005 ABC transporter BI364_08665 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BI364_08670 PF03966 Trm112p-like protein BI364_08675 PF02348 Cytidylyltransferase BI364_08685 PF00905 Penicillin binding protein transpeptidase domain BI364_08685 PF17092 Penicillin-binding protein OB-like domain BI364_08685 PF00912 Transglycosylase BI364_08710 PF01597 Glycine cleavage H-protein BI364_08720 PF02615 Malate/L-lactate dehydrogenase BI364_08725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BI364_08725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BI364_08730 PF00890 FAD binding domain BI364_08730 PF02910 Fumarate reductase flavoprotein C-term BI364_08735 PF05683 Fumarase C-terminus BI364_08740 PF05681 Fumarate hydratase (Fumerase) BI364_08745 PF00528 Binding-protein-dependent transport system inner membrane component BI364_08750 PF00005 ABC transporter BI364_08770 PF13085 2Fe-2S iron-sulfur cluster binding domain BI364_08770 PF13183 4Fe-4S dicluster domain BI364_08775 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BI364_08780 PF08666 SAF domain BI364_08785 PF00392 Bacterial regulatory proteins, gntR family BI364_08785 PF07702 UTRA domain BI364_08795 PF05114 Protein of unknown function (DUF692) BI364_08825 PF01740 STAS domain BI364_08825 PF00916 Sulfate permease family BI364_08840 PF00376 MerR family regulatory protein BI364_08840 PF09278 MerR, DNA binding BI364_08845 PF03203 MerC mercury resistance protein BI364_08850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_08850 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_08850 PF00403 Heavy-metal-associated domain BI364_08860 PF00376 MerR family regulatory protein BI364_08860 PF09278 MerR, DNA binding BI364_08880 PF01227 GTP cyclohydrolase I BI364_08890 PF00293 NUDIX domain BI364_08900 PF03279 Bacterial lipid A biosynthesis acyltransferase BI364_08905 PF01810 LysE type translocator BI364_08910 PF00672 HAMP domain BI364_08910 PF00989 PAS fold BI364_08910 PF00512 His Kinase A (phospho-acceptor) domain BI364_08910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_08910 PF18698 Histidine kinase sensor domain BI364_08920 PF01381 Helix-turn-helix BI364_08920 PF07883 Cupin domain BI364_08925 PF03594 Benzoate membrane transport protein BI364_08945 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase BI364_08945 PF09363 XFP C-terminal domain BI364_08945 PF09364 XFP N-terminal domain BI364_08950 PF00871 Acetokinase family BI364_08975 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_08975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_08975 PF00403 Heavy-metal-associated domain BI364_08985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BI364_08985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BI364_08985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BI364_08985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BI364_08990 PF02779 Transketolase, pyrimidine binding domain BI364_08990 PF02780 Transketolase, C-terminal domain BI364_08990 PF00456 Transketolase, thiamine diphosphate binding domain BI364_09000 PF00342 Phosphoglucose isomerase BI364_09005 PF00923 Transaldolase/Fructose-6-phosphate aldolase BI364_09015 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BI364_09015 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BI364_09020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BI364_09020 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BI364_09025 PF10091 Putative glucoamylase BI364_09025 PF06165 Glycosyltransferase family 36 BI364_09025 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BI364_09030 PF00589 Phage integrase family BI364_09040 PF04445 Putative SAM-dependent methyltransferase BI364_09045 PF00355 Rieske [2Fe-2S] domain BI364_09045 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BI364_09055 PF04461 Protein of unknown function (DUF520) BI364_09060 PF04241 Protein of unknown function (DUF423) BI364_09065 PF01491 Frataxin-like domain BI364_09075 PF00149 Calcineurin-like phosphoesterase BI364_09080 PF01207 Dihydrouridine synthase (Dus) BI364_09085 PF02789 Cytosol aminopeptidase family, N-terminal domain BI364_09085 PF00883 Cytosol aminopeptidase family, catalytic domain BI364_09090 PF00005 ABC transporter BI364_09095 PF01061 ABC-2 type transporter BI364_09105 PF09115 DNA polymerase III, delta subunit, C terminal BI364_09110 PF02223 Thymidylate kinase BI364_09115 PF02618 YceG-like family BI364_09120 PF01063 Amino-transferase class IV BI364_09125 PF04715 Anthranilate synthase component I, N terminal region BI364_09125 PF00425 chorismate binding enzyme BI364_09130 PF02801 Beta-ketoacyl synthase, C-terminal domain BI364_09130 PF00109 Beta-ketoacyl synthase, N-terminal domain BI364_09135 PF00550 Phosphopantetheine attachment site BI364_09145 PF00698 Acyl transferase domain BI364_09150 PF01176 Translation initiation factor 1A / IF-1 BI364_09155 PF10431 C-terminal, D2-small domain, of ClpB protein BI364_09155 PF07724 AAA domain (Cdc48 subfamily) BI364_09155 PF17871 AAA lid domain BI364_09155 PF02861 Clp amino terminal domain, pathogenicity island component BI364_09155 PF00004 ATPase family associated with various cellular activities (AAA) BI364_09160 PF02617 ATP-dependent Clp protease adaptor protein ClpS BI364_09165 PF00180 Isocitrate/isopropylmalate dehydrogenase BI364_09170 PF00293 NUDIX domain BI364_09180 PF04356 Protein of unknown function (DUF489) BI364_09185 PF00694 Aconitase C-terminal domain BI364_09185 PF00330 Aconitase family (aconitate hydratase) BI364_09195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BI364_09195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BI364_09200 PF14850 DNA-binding domain of Proline dehydrogenase BI364_09200 PF01619 Proline dehydrogenase BI364_09200 PF00171 Aldehyde dehydrogenase family BI364_09200 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BI364_09205 PF00005 ABC transporter BI364_09210 PF00005 ABC transporter BI364_09210 PF12399 Branched-chain amino acid ATP-binding cassette transporter BI364_09215 PF02653 Branched-chain amino acid transport system / permease component BI364_09215 PF11862 Domain of unknown function (DUF3382) BI364_09220 PF02653 Branched-chain amino acid transport system / permease component BI364_09230 PF00248 Aldo/keto reductase family BI364_09235 PF01544 CorA-like Mg2+ transporter protein BI364_09240 PF07885 Ion channel BI364_09240 PF02254 TrkA-N domain BI364_09245 PF00206 Lyase BI364_09245 PF10415 Fumarase C C-terminus BI364_09250 PF08328 Adenylosuccinate lyase C-terminal BI364_09250 PF00206 Lyase BI364_09255 PF08007 Cupin superfamily protein BI364_09265 PF17863 AAA lid domain BI364_09265 PF07726 ATPase family associated with various cellular activities (AAA) BI364_09275 PF01841 Transglutaminase-like superfamily BI364_09275 PF13559 Domain of unknown function (DUF4129) BI364_09275 PF11992 Domain of unknown function (DUF3488) BI364_09280 PF11992 Domain of unknown function (DUF3488) BI364_09280 PF01841 Transglutaminase-like superfamily BI364_09280 PF13559 Domain of unknown function (DUF4129) BI364_09285 PF00999 Sodium/hydrogen exchanger family BI364_09295 PF01339 CheB methylesterase BI364_09295 PF08448 PAS fold BI364_09295 PF01739 CheR methyltransferase, SAM binding domain BI364_09295 PF03705 CheR methyltransferase, all-alpha domain BI364_09300 PF01592 NifU-like N terminal domain BI364_09305 PF00266 Aminotransferase class-V BI364_09310 PF02082 Transcriptional regulator BI364_09320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BI364_09320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BI364_09320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BI364_09320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BI364_09330 PF03937 Flavinator of succinate dehydrogenase BI364_09335 PF13085 2Fe-2S iron-sulfur cluster binding domain BI364_09340 PF02910 Fumarate reductase flavoprotein C-term BI364_09340 PF00890 FAD binding domain BI364_09360 PF01336 OB-fold nucleic acid binding domain BI364_09360 PF00152 tRNA synthetases class II (D, K and N) BI364_09375 PF17768 RecJ OB domain BI364_09375 PF01368 DHH family BI364_09375 PF02272 DHHA1 domain BI364_09385 PF00313 'Cold-shock' DNA-binding domain BI364_09390 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BI364_09395 PF00072 Response regulator receiver domain BI364_09395 PF00990 Diguanylate cyclase, GGDEF domain BI364_09405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BI364_09405 PF00005 ABC transporter BI364_09410 PF00005 ABC transporter BI364_09410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BI364_09415 PF00528 Binding-protein-dependent transport system inner membrane component BI364_09420 PF12911 N-terminal TM domain of oligopeptide transport permease C BI364_09420 PF00528 Binding-protein-dependent transport system inner membrane component BI364_09425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BI364_09430 PF13356 Arm DNA-binding domain BI364_09430 PF00589 Phage integrase family BI364_09450 PF03796 DnaB-like helicase C terminal domain BI364_09450 PF00772 DnaB-like helicase N terminal domain BI364_09485 PF13276 HTH-like domain BI364_09485 PF13333 Integrase core domain BI364_09485 PF00665 Integrase core domain BI364_09490 PF01527 Transposase BI364_09495 PF01527 Transposase BI364_09545 PF13333 Integrase core domain BI364_09545 PF00665 Integrase core domain BI364_09545 PF13276 HTH-like domain BI364_09550 PF01527 Transposase BI364_09555 PF01527 Transposase BI364_09575 PF04545 Sigma-70, region 4 BI364_09575 PF04542 Sigma-70 region 2 BI364_09585 PF01842 ACT domain BI364_09585 PF00742 Homoserine dehydrogenase BI364_09585 PF03447 Homoserine dehydrogenase, NAD binding domain BI364_09590 PF00155 Aminotransferase class I and II BI364_09600 PF04542 Sigma-70 region 2 BI364_09600 PF00140 Sigma-70 factor, region 1.2 BI364_09600 PF04545 Sigma-70, region 4 BI364_09600 PF04539 Sigma-70 region 3 BI364_09605 PF01476 LysM domain BI364_09605 PF01551 Peptidase family M23 BI364_09615 PF01975 Survival protein SurE BI364_09625 PF01654 Cytochrome bd terminal oxidase subunit I BI364_09630 PF02322 Cytochrome bd terminal oxidase subunit II BI364_09645 PF01040 UbiA prenyltransferase family BI364_09655 PF01565 FAD binding domain BI364_09655 PF04030 D-arabinono-1,4-lactone oxidase BI364_09665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_09665 PF00672 HAMP domain BI364_09680 PF00106 short chain dehydrogenase BI364_09690 PF00378 Enoyl-CoA hydratase/isomerase BI364_09705 PF00501 AMP-binding enzyme BI364_09705 PF13193 AMP-binding enzyme C-terminal domain BI364_09710 PF03061 Thioesterase superfamily BI364_09715 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BI364_09715 PF01266 FAD dependent oxidoreductase BI364_09740 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BI364_09745 PF04977 Septum formation initiator BI364_09750 PF03952 Enolase, N-terminal domain BI364_09750 PF00113 Enolase, C-terminal TIM barrel domain BI364_09755 PF00793 DAHP synthetase I family BI364_09760 PF06418 CTP synthase N-terminus BI364_09760 PF00117 Glutamine amidotransferase class-I BI364_09775 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BI364_09780 PF07733 Bacterial DNA polymerase III alpha NTPase domain BI364_09780 PF14579 Helix-hairpin-helix motif BI364_09780 PF02811 PHP domain BI364_09780 PF01336 OB-fold nucleic acid binding domain BI364_09780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BI364_09800 PF03466 LysR substrate binding domain BI364_09800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_09805 PF07690 Major Facilitator Superfamily BI364_09815 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BI364_09815 PF01926 50S ribosome-binding GTPase BI364_09820 PF13360 PQQ-like domain BI364_09825 PF09976 Tetratricopeptide repeat-like domain BI364_09830 PF03129 Anticodon binding domain BI364_09830 PF13393 Histidyl-tRNA synthetase BI364_09845 PF04055 Radical SAM superfamily BI364_09850 PF00334 Nucleoside diphosphate kinase BI364_09855 PF04384 Iron-sulphur cluster assembly BI364_09860 PF00111 2Fe-2S iron-sulfur cluster binding domain BI364_09865 PF00012 Hsp70 protein BI364_09870 PF07743 HSCB C-terminal oligomerisation domain BI364_09875 PF01521 Iron-sulphur cluster biosynthesis BI364_09880 PF01592 NifU-like N terminal domain BI364_09885 PF00266 Aminotransferase class-V BI364_09890 PF02082 Transcriptional regulator BI364_09895 PF00132 Bacterial transferase hexapeptide (six repeats) BI364_09900 PF00588 SpoU rRNA Methylase family BI364_09905 PF00459 Inositol monophosphatase family BI364_09910 PF07549 SecD/SecF GG Motif BI364_09910 PF02355 Protein export membrane protein BI364_09915 PF13721 SecD export protein N-terminal TM region BI364_09915 PF07549 SecD/SecF GG Motif BI364_09915 PF02355 Protein export membrane protein BI364_09920 PF02699 Preprotein translocase subunit BI364_09925 PF01702 Queuine tRNA-ribosyltransferase BI364_09930 PF02547 Queuosine biosynthesis protein BI364_10010 PF12323 Helix-turn-helix domain BI364_10010 PF01385 Probable transposase BI364_10010 PF07282 Putative transposase DNA-binding domain BI364_10060 PF06213 Cobalamin biosynthesis protein CobT BI364_10060 PF11775 Cobalamin biosynthesis protein CobT VWA domain BI364_10120 PF00268 Ribonucleotide reductase, small chain BI364_10150 PF02767 DNA polymerase III beta subunit, central domain BI364_10150 PF00712 DNA polymerase III beta subunit, N-terminal domain BI364_10150 PF02768 DNA polymerase III beta subunit, C-terminal domain BI364_10250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BI364_10250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BI364_10250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BI364_10250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BI364_10255 PF13007 Transposase C of IS166 homeodomain BI364_10255 PF03050 Transposase IS66 family BI364_10255 PF13817 IS66 C-terminal element BI364_10255 PF13005 zinc-finger binding domain of transposase IS66 BI364_10260 PF01609 Transposase DDE domain BI364_10260 PF05598 Transposase domain (DUF772) BI364_10285 PF04343 Protein of unknown function, DUF488 BI364_10300 PF00342 Phosphoglucose isomerase BI364_10310 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BI364_10310 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BI364_10315 PF11897 Protein of unknown function (DUF3417) BI364_10315 PF00343 Carbohydrate phosphorylase BI364_10320 PF00300 Histidine phosphatase superfamily (branch 1) BI364_10335 PF00563 EAL domain BI364_10335 PF00990 Diguanylate cyclase, GGDEF domain BI364_10335 PF03707 Bacterial signalling protein N terminal repeat BI364_10380 PF03389 MobA/MobL family BI364_10380 PF17841 BID domain of Bartonella effector protein (Bep) BI364_10380 PF01443 Viral (Superfamily 1) RNA helicase BI364_10405 PF04002 RadC-like JAB domain BI364_10430 PF00589 Phage integrase family BI364_10450 PF00732 GMC oxidoreductase BI364_10450 PF05199 GMC oxidoreductase BI364_10485 PF13333 Integrase core domain BI364_10485 PF00665 Integrase core domain BI364_10485 PF13276 HTH-like domain BI364_10490 PF01527 Transposase BI364_10510 PF00857 Isochorismatase family BI364_10515 PF03069 Acetamidase/Formamidase family BI364_10520 PF00528 Binding-protein-dependent transport system inner membrane component BI364_10525 PF00528 Binding-protein-dependent transport system inner membrane component BI364_10525 PF12911 N-terminal TM domain of oligopeptide transport permease C BI364_10530 PF00005 ABC transporter BI364_10530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BI364_10535 PF00005 ABC transporter BI364_10535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BI364_10540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BI364_10550 PF00355 Rieske [2Fe-2S] domain BI364_10550 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BI364_10560 PF00033 Cytochrome b/b6/petB BI364_10560 PF00032 Cytochrome b(C-terminal)/b6/petD BI364_10565 PF02167 Cytochrome C1 family BI364_10570 PF13673 Acetyltransferase (GNAT) domain BI364_10590 PF02641 Uncharacterized ACR, COG1993 BI364_10595 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BI364_10600 PF00266 Aminotransferase class-V BI364_10610 PF02374 Anion-transporting ATPase BI364_10610 PF17886 HSP20-like domain found in ArsA BI364_10620 PF05099 Tellurite resistance protein TerB BI364_10620 PF00226 DnaJ domain BI364_10625 PF00533 BRCA1 C Terminus (BRCT) domain BI364_10625 PF01653 NAD-dependent DNA ligase adenylation domain BI364_10625 PF03120 NAD-dependent DNA ligase OB-fold domain BI364_10625 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BI364_10625 PF12826 Helix-hairpin-helix motif BI364_10630 PF04354 ZipA, C-terminal FtsZ-binding domain BI364_10640 PF14489 QueF-like protein BI364_10645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BI364_10650 PF01351 Ribonuclease HII BI364_10655 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BI364_10660 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BI364_10665 PF02684 Lipid-A-disaccharide synthetase BI364_10670 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BI364_10670 PF00132 Bacterial transferase hexapeptide (six repeats) BI364_10675 PF07977 FabA-like domain BI364_10680 PF00132 Bacterial transferase hexapeptide (six repeats) BI364_10680 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BI364_10690 PF01103 Surface antigen BI364_10690 PF07244 Surface antigen variable number repeat BI364_10695 PF02163 Peptidase family M50 BI364_10695 PF17820 PDZ domain BI364_10695 PF13180 PDZ domain BI364_10700 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BI364_10700 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BI364_10700 PF13288 DXP reductoisomerase C-terminal domain BI364_10710 PF01255 Putative undecaprenyl diphosphate synthase BI364_10715 PF01765 Ribosome recycling factor BI364_10720 PF00696 Amino acid kinase family BI364_10725 PF00889 Elongation factor TS BI364_10730 PF00318 Ribosomal protein S2 BI364_10735 PF00557 Metallopeptidase family M24 BI364_10740 PF01966 HD domain BI364_10740 PF01909 Nucleotidyltransferase domain BI364_10740 PF08335 GlnD PII-uridylyltransferase BI364_10740 PF01842 ACT domain BI364_10750 PF00132 Bacterial transferase hexapeptide (six repeats) BI364_10750 PF14602 Hexapeptide repeat of succinyl-transferase BI364_10750 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BI364_10760 PF03960 ArsC family BI364_10765 PF01546 Peptidase family M20/M25/M40 BI364_10765 PF07687 Peptidase dimerisation domain BI364_10780 PF03739 Lipopolysaccharide export system permease LptF/LptG BI364_10785 PF03739 Lipopolysaccharide export system permease LptF/LptG BI364_10790 PF02789 Cytosol aminopeptidase family, N-terminal domain BI364_10790 PF00883 Cytosol aminopeptidase family, catalytic domain BI364_10795 PF04364 DNA polymerase III chi subunit, HolC BI364_10805 PF10458 Valyl tRNA synthetase tRNA binding arm BI364_10805 PF00133 tRNA synthetases class I (I, L, M and V) BI364_10805 PF08264 Anticodon-binding domain of tRNA BI364_10815 PF01266 FAD dependent oxidoreductase BI364_10820 PF00005 ABC transporter BI364_10825 PF00528 Binding-protein-dependent transport system inner membrane component BI364_10830 PF00528 Binding-protein-dependent transport system inner membrane component BI364_10835 PF12849 PBP superfamily domain BI364_10840 PF12794 Mechanosensitive ion channel inner membrane domain 1 BI364_10840 PF12795 Mechanosensitive ion channel porin domain BI364_10840 PF00924 Mechanosensitive ion channel BI364_10845 PF08443 RimK-like ATP-grasp domain BI364_10845 PF18030 RimK PreATP-grasp domain BI364_10850 PF08443 RimK-like ATP-grasp domain BI364_10850 PF18030 RimK PreATP-grasp domain BI364_10860 PF06146 Phosphate-starvation-inducible E BI364_10865 PF00285 Citrate synthase, C-terminal domain BI364_10875 PF00009 Elongation factor Tu GTP binding domain BI364_10875 PF03144 Elongation factor Tu domain 2 BI364_10875 PF16658 Class II release factor RF3, C-terminal domain BI364_10880 PF00583 Acetyltransferase (GNAT) family BI364_10885 PF03167 Uracil DNA glycosylase superfamily BI364_10890 PF08502 LeuA allosteric (dimerisation) domain BI364_10890 PF00682 HMGL-like BI364_10895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BI364_10900 PF00528 Binding-protein-dependent transport system inner membrane component BI364_10910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BI364_10910 PF00005 ABC transporter BI364_10915 PF01066 CDP-alcohol phosphatidyltransferase BI364_10920 PF02666 Phosphatidylserine decarboxylase BI364_10925 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BI364_10925 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BI364_10930 PF10369 Small subunit of acetolactate synthase BI364_10935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BI364_10935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BI364_10935 PF00205 Thiamine pyrophosphate enzyme, central domain BI364_10945 PF01177 Asp/Glu/Hydantoin racemase BI364_10955 PF02743 Cache domain BI364_10955 PF00672 HAMP domain BI364_10955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_10970 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BI364_10985 PF03358 NADPH-dependent FMN reductase BI364_10990 PF00892 EamA-like transporter family BI364_11010 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_11010 PF00403 Heavy-metal-associated domain BI364_11010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_11020 PF02411 MerT mercuric transport protein BI364_11025 PF03707 Bacterial signalling protein N terminal repeat BI364_11025 PF00990 Diguanylate cyclase, GGDEF domain BI364_11025 PF00563 EAL domain BI364_11040 PF00005 ABC transporter BI364_11040 PF12848 ABC transporter BI364_11045 PF10396 GTP-binding protein TrmE N-terminus BI364_11045 PF12631 MnmE helical domain BI364_11045 PF01926 50S ribosome-binding GTPase BI364_11050 PF01926 50S ribosome-binding GTPase BI364_11050 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BI364_11055 PF01381 Helix-turn-helix BI364_11060 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BI364_11110 PF00005 ABC transporter BI364_11115 PF01894 Uncharacterised protein family UPF0047 BI364_11120 PF00534 Glycosyl transferases group 1 BI364_11120 PF13439 Glycosyltransferase Family 4 BI364_11130 PF03466 LysR substrate binding domain BI364_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_11135 PF08534 Redoxin BI364_11135 PF00462 Glutaredoxin BI364_11145 PF00753 Metallo-beta-lactamase superfamily BI364_11145 PF16123 Hydroxyacylglutathione hydrolase C-terminus BI364_11150 PF00990 Diguanylate cyclase, GGDEF domain BI364_11150 PF05230 MASE2 domain BI364_11160 PF03705 CheR methyltransferase, all-alpha domain BI364_11160 PF01739 CheR methyltransferase, SAM binding domain BI364_11180 PF00072 Response regulator receiver domain BI364_11180 PF01584 CheW-like domain BI364_11195 PF01312 FlhB HrpN YscU SpaS Family BI364_11205 PF01584 CheW-like domain BI364_11215 PF13614 AAA domain BI364_11220 PF13677 Membrane MotB of proton-channel complex MotA/MotB BI364_11220 PF00691 OmpA family BI364_11225 PF01618 MotA/TolQ/ExbB proton channel family BI364_11230 PF00072 Response regulator receiver domain BI364_11230 PF01339 CheB methylesterase BI364_11240 PF04344 Chemotaxis phosphatase, CheZ BI364_11245 PF00072 Response regulator receiver domain BI364_11250 PF04542 Sigma-70 region 2 BI364_11250 PF04539 Sigma-70 region 3 BI364_11250 PF04545 Sigma-70, region 4 BI364_11255 PF10609 NUBPL iron-transfer P-loop NTPase BI364_11260 PF00448 SRP54-type protein, GTPase domain BI364_11265 PF00771 FHIPEP family BI364_11270 PF01312 FlhB HrpN YscU SpaS Family BI364_11275 PF01311 Bacterial export proteins, family 1 BI364_11280 PF01313 Bacterial export proteins, family 3 BI364_11285 PF00813 FliP family BI364_11290 PF04347 Flagellar biosynthesis protein, FliO BI364_11295 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BI364_11300 PF02154 Flagellar motor switch protein FliM BI364_11300 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BI364_11310 PF00672 HAMP domain BI364_11310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_11310 PF17200 Single Cache domain 2 BI364_11315 PF00672 HAMP domain BI364_11315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_11315 PF17200 Single Cache domain 2 BI364_11320 PF00672 HAMP domain BI364_11320 PF17200 Single Cache domain 2 BI364_11320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_11350 PF14841 FliG middle domain BI364_11350 PF14842 FliG N-terminal domain BI364_11350 PF01706 FliG C-terminal domain BI364_11355 PF08345 Flagellar M-ring protein C-terminal BI364_11355 PF01514 Secretory protein of YscJ/FliF family BI364_11360 PF01695 IstB-like ATP binding protein BI364_11365 PF00665 Integrase core domain BI364_11370 PF02049 Flagellar hook-basal body complex protein FliE BI364_11375 PF02954 Bacterial regulatory protein, Fis family BI364_11375 PF00072 Response regulator receiver domain BI364_11375 PF00158 Sigma-54 interaction domain BI364_11380 PF00512 His Kinase A (phospho-acceptor) domain BI364_11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_11385 PF00072 Response regulator receiver domain BI364_11385 PF02954 Bacterial regulatory protein, Fis family BI364_11385 PF00158 Sigma-54 interaction domain BI364_11400 PF02561 Flagellar protein FliS BI364_11405 PF02465 Flagellar hook-associated protein 2 N-terminus BI364_11405 PF07195 Flagellar hook-associated protein 2 C-terminus BI364_11415 PF00669 Bacterial flagellin N-terminal helical region BI364_11415 PF00700 Bacterial flagellin C-terminal helical region BI364_11425 PF00669 Bacterial flagellin N-terminal helical region BI364_11430 PF00460 Flagella basal body rod protein BI364_11430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BI364_11435 PF10135 Rod binding protein BI364_11435 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BI364_11440 PF02119 Flagellar P-ring protein BI364_11445 PF02107 Flagellar L-ring protein BI364_11450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BI364_11450 PF00460 Flagella basal body rod protein BI364_11455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BI364_11455 PF00460 Flagella basal body rod protein BI364_11460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BI364_11460 PF00460 Flagella basal body rod protein BI364_11460 PF07196 Flagellin hook IN motif BI364_11460 PF07559 Flagellar basal body protein FlaE BI364_11465 PF13860 FlgD Ig-like domain BI364_11465 PF03963 Flagellar hook capping protein - N-terminal region BI364_11465 PF13861 FlgD Tudor-like domain BI364_11470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BI364_11470 PF00460 Flagella basal body rod protein BI364_11475 PF00460 Flagella basal body rod protein BI364_11480 PF01209 ubiE/COQ5 methyltransferase family BI364_11485 PF01464 Transglycosylase SLT domain BI364_11485 PF14718 Soluble lytic murein transglycosylase L domain BI364_11500 PF00580 UvrD/REP helicase N-terminal domain BI364_11500 PF13361 UvrD-like helicase C-terminal domain BI364_11505 PF01177 Asp/Glu/Hydantoin racemase BI364_11520 PF01145 SPFH domain / Band 7 family BI364_11530 PF06167 Glucose-regulated metallo-peptidase M90 BI364_11540 PF03992 Antibiotic biosynthesis monooxygenase BI364_11545 PF01370 NAD dependent epimerase/dehydratase family BI364_11545 PF02222 ATP-grasp domain BI364_11550 PF13649 Methyltransferase domain BI364_11560 PF00005 ABC transporter BI364_11620 PF01501 Glycosyl transferase family 8 BI364_11620 PF08437 Glycosyl transferase family 8 C-terminal BI364_11660 PF13439 Glycosyltransferase Family 4 BI364_11660 PF00534 Glycosyl transferases group 1 BI364_11675 PF13537 Glutamine amidotransferase domain BI364_11675 PF00733 Asparagine synthase BI364_11680 PF13439 Glycosyltransferase Family 4 BI364_11680 PF00534 Glycosyl transferases group 1 BI364_11700 PF13401 AAA domain BI364_11700 PF01471 Putative peptidoglycan binding domain BI364_11710 PF13614 AAA domain BI364_11725 PF01103 Surface antigen BI364_11725 PF17243 POTRA domain TamA domain 1 BI364_11750 PF01339 CheB methylesterase BI364_11750 PF00072 Response regulator receiver domain BI364_11755 PF03975 CheD chemotactic sensory transduction BI364_11760 PF01739 CheR methyltransferase, SAM binding domain BI364_11760 PF03705 CheR methyltransferase, all-alpha domain BI364_11765 PF01584 CheW-like domain BI364_11770 PF12729 Four helix bundle sensory module for signal transduction BI364_11770 PF00672 HAMP domain BI364_11770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_11775 PF01584 CheW-like domain BI364_11775 PF01627 Hpt domain BI364_11775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_11775 PF02895 Signal transducing histidine kinase, homodimeric domain BI364_11790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_11790 PF00672 HAMP domain BI364_11790 PF17200 Single Cache domain 2 BI364_11795 PF02569 Pantoate-beta-alanine ligase BI364_11800 PF02548 Ketopantoate hydroxymethyltransferase BI364_11805 PF01712 Deoxynucleoside kinase BI364_11810 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BI364_11815 PF01743 Poly A polymerase head domain BI364_11815 PF12626 Polymerase A arginine-rich C-terminus BI364_11815 PF12627 Probable RNA and SrmB- binding site of polymerase A BI364_11830 PF01479 S4 domain BI364_11840 PF03692 Putative zinc- or iron-chelating domain BI364_11870 PF13439 Glycosyltransferase Family 4 BI364_11870 PF00534 Glycosyl transferases group 1 BI364_11885 PF00440 Bacterial regulatory proteins, tetR family BI364_11890 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BI364_11890 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BI364_11895 PF00183 Hsp90 protein BI364_11895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_11900 PF00990 Diguanylate cyclase, GGDEF domain BI364_11915 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BI364_11920 PF03480 Bacterial extracellular solute-binding protein, family 7 BI364_11930 PF01245 Ribosomal protein L19 BI364_11935 PF01746 tRNA (Guanine-1)-methyltransferase BI364_11940 PF05239 PRC-barrel domain BI364_11940 PF01782 RimM N-terminal domain BI364_11945 PF00886 Ribosomal protein S16 BI364_11950 PF02881 SRP54-type protein, helical bundle domain BI364_11950 PF02978 Signal peptide binding domain BI364_11950 PF00448 SRP54-type protein, GTPase domain BI364_11960 PF00571 CBS domain BI364_11960 PF03471 Transporter associated domain BI364_11960 PF01595 Cyclin M transmembrane N-terminal domain BI364_11980 PF02915 Rubrerythrin BI364_11985 PF02609 Exonuclease VII small subunit BI364_11990 PF00348 Polyprenyl synthetase BI364_12000 PF01242 6-pyruvoyl tetrahydropterin synthase BI364_12005 PF02649 Type I GTP cyclohydrolase folE2 BI364_12010 PF06804 NlpB/DapX lipoprotein BI364_12015 PF00701 Dihydrodipicolinate synthetase family BI364_12020 PF01842 ACT domain BI364_12025 PF00578 AhpC/TSA family BI364_12030 PF13638 PIN domain BI364_12030 PF02562 PhoH-like protein BI364_12035 PF01594 AI-2E family transporter BI364_12050 PF03466 LysR substrate binding domain BI364_12050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_12060 PF00873 AcrB/AcrD/AcrF family BI364_12085 PF03129 Anticodon binding domain BI364_12085 PF04073 Aminoacyl-tRNA editing domain BI364_12085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BI364_12090 PF00708 Acylphosphatase BI364_12095 PF03631 Virulence factor BrkB BI364_12100 PF03631 Virulence factor BrkB BI364_12115 PF03358 NADPH-dependent FMN reductase BI364_12120 PF08299 Bacterial dnaA protein helix-turn-helix BI364_12120 PF00308 Bacterial dnaA protein BI364_12135 PF02769 AIR synthase related protein, C-terminal domain BI364_12135 PF00586 AIR synthase related protein, N-terminal domain BI364_12140 PF00551 Formyl transferase BI364_12150 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_12150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BI364_12160 PF00497 Bacterial extracellular solute-binding proteins, family 3 BI364_12170 PF00528 Binding-protein-dependent transport system inner membrane component BI364_12175 PF00005 ABC transporter BI364_12185 PF01523 Putative modulator of DNA gyrase BI364_12195 PF01523 Putative modulator of DNA gyrase BI364_12200 PF00795 Carbon-nitrogen hydrolase BI364_12215 PF00575 S1 RNA binding domain BI364_12215 PF10150 Ribonuclease E/G family BI364_12220 PF02545 Maf-like protein BI364_12225 PF02590 Predicted SPOUT methyltransferase BI364_12235 PF01467 Cytidylyltransferase-like BI364_12240 PF00171 Aldehyde dehydrogenase family BI364_12255 PF13603 Leucyl-tRNA synthetase, Domain 2 BI364_12255 PF08264 Anticodon-binding domain of tRNA BI364_12255 PF00133 tRNA synthetases class I (I, L, M and V) BI364_12270 PF00795 Carbon-nitrogen hydrolase BI364_12275 PF03471 Transporter associated domain BI364_12275 PF00571 CBS domain BI364_12280 PF02130 Uncharacterized protein family UPF0054 BI364_12285 PF02562 PhoH-like protein BI364_12290 PF00919 Uncharacterized protein family UPF0004 BI364_12290 PF04055 Radical SAM superfamily BI364_12290 PF01938 TRAM domain BI364_12325 PF07282 Putative transposase DNA-binding domain BI364_12325 PF01385 Probable transposase BI364_12325 PF12323 Helix-turn-helix domain BI364_12335 PF01850 PIN domain BI364_12355 PF01370 NAD dependent epimerase/dehydratase family BI364_12360 PF02397 Bacterial sugar transferase BI364_12370 PF16363 GDP-mannose 4,6 dehydratase BI364_12375 PF16363 GDP-mannose 4,6 dehydratase BI364_12380 PF00534 Glycosyl transferases group 1 BI364_12380 PF13439 Glycosyltransferase Family 4 BI364_12390 PF13537 Glutamine amidotransferase domain BI364_12390 PF00733 Asparagine synthase BI364_12395 PF00535 Glycosyl transferase family 2 BI364_12400 PF00005 ABC transporter BI364_12405 PF01061 ABC-2 type transporter BI364_12415 PF13649 Methyltransferase domain BI364_12420 PF01943 Polysaccharide biosynthesis protein BI364_12420 PF14667 Polysaccharide biosynthesis C-terminal domain BI364_12425 PF16363 GDP-mannose 4,6 dehydratase BI364_12440 PF04321 RmlD substrate binding domain BI364_12445 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BI364_12450 PF00483 Nucleotidyl transferase BI364_12515 PF00436 Single-strand binding protein family BI364_12520 PF07690 Major Facilitator Superfamily BI364_12525 PF17760 UvrA interaction domain BI364_12525 PF00005 ABC transporter BI364_12525 PF17755 UvrA DNA-binding domain BI364_12530 PF07282 Putative transposase DNA-binding domain BI364_12530 PF01385 Probable transposase BI364_12530 PF12323 Helix-turn-helix domain BI364_12540 PF01385 Probable transposase BI364_12540 PF07282 Putative transposase DNA-binding domain BI364_12540 PF12323 Helix-turn-helix domain BI364_12545 PF01196 Ribosomal protein L17 BI364_12550 PF01000 RNA polymerase Rpb3/RpoA insert domain BI364_12550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BI364_12550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BI364_12555 PF01479 S4 domain BI364_12555 PF00163 Ribosomal protein S4/S9 N-terminal domain BI364_12560 PF00411 Ribosomal protein S11 BI364_12565 PF00416 Ribosomal protein S13/S18 BI364_12570 PF00344 SecY translocase BI364_12575 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BI364_12580 PF00327 Ribosomal protein L30p/L7e BI364_12585 PF03719 Ribosomal protein S5, C-terminal domain BI364_12585 PF00333 Ribosomal protein S5, N-terminal domain BI364_12590 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BI364_12595 PF00347 Ribosomal protein L6 BI364_12600 PF00410 Ribosomal protein S8 BI364_12605 PF00253 Ribosomal protein S14p/S29e BI364_12610 PF00281 Ribosomal protein L5 BI364_12610 PF00673 ribosomal L5P family C-terminus BI364_12615 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BI364_12615 PF00467 KOW motif BI364_12620 PF00238 Ribosomal protein L14p/L23e BI364_12625 PF00366 Ribosomal protein S17 BI364_12630 PF00831 Ribosomal L29 protein BI364_12635 PF00252 Ribosomal protein L16p/L10e BI364_12640 PF00189 Ribosomal protein S3, C-terminal domain BI364_12640 PF07650 KH domain BI364_12645 PF00237 Ribosomal protein L22p/L17e BI364_12650 PF00203 Ribosomal protein S19 BI364_12655 PF00181 Ribosomal Proteins L2, RNA binding domain BI364_12655 PF03947 Ribosomal Proteins L2, C-terminal domain BI364_12660 PF00276 Ribosomal protein L23 BI364_12665 PF00573 Ribosomal protein L4/L1 family BI364_12670 PF00297 Ribosomal protein L3 BI364_12675 PF00338 Ribosomal protein S10p/S20e BI364_12680 PF03143 Elongation factor Tu C-terminal domain BI364_12680 PF00009 Elongation factor Tu GTP binding domain BI364_12680 PF03144 Elongation factor Tu domain 2 BI364_12685 PF03144 Elongation factor Tu domain 2 BI364_12685 PF00009 Elongation factor Tu GTP binding domain BI364_12685 PF03764 Elongation factor G, domain IV BI364_12685 PF00679 Elongation factor G C-terminus BI364_12685 PF14492 Elongation Factor G, domain II BI364_12690 PF00177 Ribosomal protein S7p/S5e BI364_12695 PF00164 Ribosomal protein S12/S23 BI364_12700 PF04998 RNA polymerase Rpb1, domain 5 BI364_12700 PF04997 RNA polymerase Rpb1, domain 1 BI364_12700 PF05000 RNA polymerase Rpb1, domain 4 BI364_12700 PF04983 RNA polymerase Rpb1, domain 3 BI364_12700 PF00623 RNA polymerase Rpb1, domain 2 BI364_12705 PF04563 RNA polymerase beta subunit BI364_12705 PF04561 RNA polymerase Rpb2, domain 2 BI364_12705 PF10385 RNA polymerase beta subunit external 1 domain BI364_12705 PF04565 RNA polymerase Rpb2, domain 3 BI364_12705 PF04560 RNA polymerase Rpb2, domain 7 BI364_12705 PF00562 RNA polymerase Rpb2, domain 6 BI364_12710 PF16320 Ribosomal protein L7/L12 dimerisation domain BI364_12710 PF00542 Ribosomal protein L7/L12 C-terminal domain BI364_12715 PF00466 Ribosomal protein L10 BI364_12720 PF00687 Ribosomal protein L1p/L10e family BI364_12725 PF00298 Ribosomal protein L11, RNA binding domain BI364_12725 PF03946 Ribosomal protein L11, N-terminal domain BI364_12730 PF00467 KOW motif BI364_12730 PF02357 Transcription termination factor nusG BI364_12735 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BI364_12745 PF00009 Elongation factor Tu GTP binding domain BI364_12745 PF03143 Elongation factor Tu C-terminal domain BI364_12745 PF03144 Elongation factor Tu domain 2 BI364_12765 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BI364_12765 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BI364_12765 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BI364_12770 PF00905 Penicillin binding protein transpeptidase domain BI364_12770 PF03717 Penicillin-binding Protein dimerisation domain BI364_12775 PF07943 Penicillin-binding protein 5, C-terminal domain BI364_12775 PF00768 D-alanyl-D-alanine carboxypeptidase BI364_12780 PF01098 Cell cycle protein BI364_12785 PF06969 HemN C-terminal domain BI364_12785 PF04055 Radical SAM superfamily BI364_12795 PF01026 TatD related DNase BI364_12800 PF01722 BolA-like protein BI364_12805 PF00561 alpha/beta hydrolase fold BI364_12835 PF13686 DsrE/DsrF/DrsH-like family BI364_12845 PF00480 ROK family BI364_12850 PF01923 Cobalamin adenosyltransferase BI364_12855 PF00593 TonB dependent receptor BI364_12855 PF07715 TonB-dependent Receptor Plug Domain BI364_12860 PF00563 EAL domain BI364_12865 PF08267 Cobalamin-independent synthase, N-terminal domain BI364_12865 PF01717 Cobalamin-independent synthase, Catalytic domain BI364_12870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_12870 PF03466 LysR substrate binding domain BI364_12880 PF03477 ATP cone domain BI364_12880 PF02867 Ribonucleotide reductase, barrel domain BI364_12880 PF00317 Ribonucleotide reductase, all-alpha domain BI364_12885 PF00268 Ribonucleotide reductase, small chain BI364_12905 PF13521 AAA domain BI364_12905 PF01381 Helix-turn-helix BI364_12915 PF01609 Transposase DDE domain BI364_12915 PF05598 Transposase domain (DUF772) BI364_12960 PF00512 His Kinase A (phospho-acceptor) domain BI364_12960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_12960 PF00672 HAMP domain BI364_12965 PF00072 Response regulator receiver domain BI364_12965 PF00486 Transcriptional regulatory protein, C terminal BI364_12975 PF00990 Diguanylate cyclase, GGDEF domain BI364_12980 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BI364_12985 PF02230 Phospholipase/Carboxylesterase BI364_12990 PF00005 ABC transporter BI364_12995 PF00528 Binding-protein-dependent transport system inner membrane component BI364_13000 PF00497 Bacterial extracellular solute-binding proteins, family 3 BI364_13010 PF01790 Prolipoprotein diacylglyceryl transferase BI364_13015 PF13185 GAF domain BI364_13030 PF08361 MAATS-type transcriptional repressor, C-terminal region BI364_13030 PF00440 Bacterial regulatory proteins, tetR family BI364_13045 PF00583 Acetyltransferase (GNAT) family BI364_13050 PF01695 IstB-like ATP binding protein BI364_13055 PF00665 Integrase core domain BI364_13065 PF00296 Luciferase-like monooxygenase BI364_13070 PF01451 Low molecular weight phosphotyrosine protein phosphatase BI364_13075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BI364_13095 PF00563 EAL domain BI364_13095 PF03707 Bacterial signalling protein N terminal repeat BI364_13095 PF00990 Diguanylate cyclase, GGDEF domain BI364_13100 PF01184 GPR1/FUN34/yaaH family BI364_13105 PF03707 Bacterial signalling protein N terminal repeat BI364_13105 PF00990 Diguanylate cyclase, GGDEF domain BI364_13105 PF00563 EAL domain BI364_13125 PF08241 Methyltransferase domain BI364_13140 PF01594 AI-2E family transporter BI364_13145 PF01161 Phosphatidylethanolamine-binding protein BI364_13160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_13160 PF08918 PhoQ Sensor BI364_13165 PF00072 Response regulator receiver domain BI364_13165 PF00486 Transcriptional regulatory protein, C terminal BI364_13195 PF01323 DSBA-like thioredoxin domain BI364_13200 PF07690 Major Facilitator Superfamily BI364_13215 PF01636 Phosphotransferase enzyme family BI364_13220 PF00483 Nucleotidyl transferase BI364_13230 PF00691 OmpA family BI364_13230 PF01389 OmpA-like transmembrane domain BI364_13235 PF02698 DUF218 domain BI364_13240 PF00990 Diguanylate cyclase, GGDEF domain BI364_13240 PF00563 EAL domain BI364_13240 PF03707 Bacterial signalling protein N terminal repeat BI364_13245 PF04055 Radical SAM superfamily BI364_13250 PF03099 Biotin/lipoate A/B protein ligase family BI364_13255 PF04359 Protein of unknown function (DUF493) BI364_13260 PF00768 D-alanyl-D-alanine carboxypeptidase BI364_13260 PF07943 Penicillin-binding protein 5, C-terminal domain BI364_13265 PF05036 Sporulation related domain BI364_13265 PF03330 Lytic transglycolase BI364_13270 PF13406 Transglycosylase SLT domain BI364_13275 PF01098 Cell cycle protein BI364_13280 PF00905 Penicillin binding protein transpeptidase domain BI364_13280 PF03717 Penicillin-binding Protein dimerisation domain BI364_13285 PF00719 Inorganic pyrophosphatase BI364_13290 PF05191 Adenylate kinase, active site lid BI364_13295 PF03968 OstA-like protein BI364_13295 PF04453 LPS transport system D BI364_13300 PF00639 PPIC-type PPIASE domain BI364_13300 PF09312 SurA N-terminal domain BI364_13305 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BI364_13315 PF00923 Transaldolase/Fructose-6-phosphate aldolase BI364_13325 PF02685 Glucokinase BI364_13330 PF04379 ApaG domain BI364_13335 PF13649 Methyltransferase domain BI364_13340 PF00149 Calcineurin-like phosphoesterase BI364_13360 PF02599 Global regulator protein family BI364_13365 PF01842 ACT domain BI364_13365 PF13840 ACT domain BI364_13365 PF00696 Amino acid kinase family BI364_13370 PF01411 tRNA synthetases class II (A) BI364_13370 PF02272 DHHA1 domain BI364_13370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BI364_13375 PF02631 RecX family BI364_13380 PF00154 recA bacterial DNA recombination protein BI364_13390 PF02464 Competence-damaged protein BI364_13410 PF13520 Amino acid permease BI364_13420 PF00665 Integrase core domain BI364_13425 PF01695 IstB-like ATP binding protein BI364_13435 PF00581 Rhodanese-like domain BI364_13435 PF00753 Metallo-beta-lactamase superfamily BI364_13440 PF07690 Major Facilitator Superfamily BI364_13465 PF00403 Heavy-metal-associated domain BI364_13475 PF00403 Heavy-metal-associated domain BI364_13480 PF13411 MerR HTH family regulatory protein BI364_13485 PF00873 AcrB/AcrD/AcrF family BI364_13500 PF00394 Multicopper oxidase BI364_13500 PF07732 Multicopper oxidase BI364_13520 PF01610 Transposase BI364_13520 PF13542 Helix-turn-helix domain of transposase family ISL3 BI364_13520 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 BI364_13525 PF05598 Transposase domain (DUF772) BI364_13525 PF01609 Transposase DDE domain BI364_13530 PF01022 Bacterial regulatory protein, arsR family BI364_13545 PF00873 AcrB/AcrD/AcrF family BI364_13555 PF00665 Integrase core domain BI364_13555 PF13333 Integrase core domain BI364_13555 PF13276 HTH-like domain BI364_13560 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BI364_13615 PF00403 Heavy-metal-associated domain BI364_13625 PF13411 MerR HTH family regulatory protein BI364_13635 PF00817 impB/mucB/samB family BI364_13635 PF11799 impB/mucB/samB family C-terminal domain BI364_13655 PF00476 DNA polymerase family A BI364_13655 PF01612 3'-5' exonuclease BI364_13725 PF05188 MutS domain II BI364_13725 PF01624 MutS domain I BI364_13725 PF05190 MutS family domain IV BI364_13725 PF00488 MutS domain V BI364_13725 PF05192 MutS domain III BI364_13735 PF01740 STAS domain BI364_13745 PF00072 Response regulator receiver domain BI364_13745 PF00990 Diguanylate cyclase, GGDEF domain BI364_13750 PF00037 4Fe-4S binding domain BI364_13750 PF11953 Domain of unknown function (DUF3470) BI364_13755 PF04055 Radical SAM superfamily BI364_13755 PF06968 Biotin and Thiamin Synthesis associated domain BI364_13765 PF10437 Bacterial lipoate protein ligase C-terminus BI364_13765 PF03099 Biotin/lipoate A/B protein ligase family BI364_13775 PF01597 Glycine cleavage H-protein BI364_13785 PF01597 Glycine cleavage H-protein BI364_13790 PF02754 Cysteine-rich domain BI364_13820 PF00581 Rhodanese-like domain BI364_13820 PF00899 ThiF family BI364_13830 PF01435 Peptidase family M48 BI364_13830 PF13181 Tetratricopeptide repeat BI364_13865 PF08281 Sigma-70, region 4 BI364_13865 PF04542 Sigma-70 region 2 BI364_13870 PF00174 Oxidoreductase molybdopterin binding domain BI364_13875 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BI364_13875 PF01926 50S ribosome-binding GTPase BI364_13880 PF00009 Elongation factor Tu GTP binding domain BI364_13880 PF11987 Translation-initiation factor 2 BI364_13880 PF08364 Bacterial translation initiation factor IF-2 associated region BI364_13880 PF04760 Translation initiation factor IF-2, N-terminal region BI364_13885 PF00672 HAMP domain BI364_13885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_13885 PF00512 His Kinase A (phospho-acceptor) domain BI364_13890 PF04349 Periplasmic glucan biosynthesis protein, MdoG BI364_13895 PF00535 Glycosyl transferase family 2 BI364_13905 PF00486 Transcriptional regulatory protein, C terminal BI364_13905 PF00072 Response regulator receiver domain BI364_13930 PF00398 Ribosomal RNA adenine dimethylase BI364_13935 PF02798 Glutathione S-transferase, N-terminal domain BI364_13955 PF13276 HTH-like domain BI364_13955 PF00665 Integrase core domain BI364_13955 PF13333 Integrase core domain BI364_13970 PF00909 Ammonium Transporter Family BI364_13975 PF00692 dUTPase BI364_13980 PF10609 NUBPL iron-transfer P-loop NTPase BI364_13985 PF01588 Putative tRNA binding domain BI364_13985 PF09334 tRNA synthetases class I (M) BI364_13995 PF00291 Pyridoxal-phosphate dependent enzyme BI364_14005 PF00596 Class II Aldolase and Adducin N-terminal domain BI364_14010 PF03079 ARD/ARD' family BI364_14020 PF00563 EAL domain BI364_14020 PF00990 Diguanylate cyclase, GGDEF domain BI364_14020 PF03707 Bacterial signalling protein N terminal repeat BI364_14040 PF04060 Putative Fe-S cluster BI364_14050 PF10576 Iron-sulfur binding domain of endonuclease III BI364_14050 PF00633 Helix-hairpin-helix motif BI364_14050 PF00730 HhH-GPD superfamily base excision DNA repair protein BI364_14060 PF13333 Integrase core domain BI364_14060 PF13276 HTH-like domain BI364_14060 PF00665 Integrase core domain BI364_14075 PF00909 Ammonium Transporter Family BI364_14080 PF02673 Bacitracin resistance protein BacA BI364_14085 PF00175 Oxidoreductase NAD-binding domain BI364_14085 PF00970 Oxidoreductase FAD-binding domain BI364_14090 PF02254 TrkA-N domain BI364_14090 PF02080 TrkA-C domain BI364_14090 PF00999 Sodium/hydrogen exchanger family BI364_14100 PF00459 Inositol monophosphatase family BI364_14105 PF01641 SelR domain BI364_14120 PF13409 Glutathione S-transferase, N-terminal domain BI364_14125 PF07681 DoxX BI364_14130 PF06339 Ectoine synthase BI364_14135 PF00202 Aminotransferase class-III BI364_14140 PF00583 Acetyltransferase (GNAT) family BI364_14155 PF04262 Glutamate-cysteine ligase BI364_14160 PF00563 EAL domain BI364_14160 PF00990 Diguanylate cyclase, GGDEF domain BI364_14160 PF03707 Bacterial signalling protein N terminal repeat BI364_14170 PF03625 Domain of unknown function DUF302 BI364_14170 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BI364_14185 PF06508 Queuosine biosynthesis protein QueC BI364_14190 PF04055 Radical SAM superfamily BI364_14195 PF13174 Tetratricopeptide repeat BI364_14195 PF16331 TolA binding protein trimerisation BI364_14200 PF00691 OmpA family BI364_14205 PF04052 TolB amino-terminal domain BI364_14205 PF07676 WD40-like Beta Propeller Repeat BI364_14215 PF02472 Biopolymer transport protein ExbD/TolR BI364_14220 PF01618 MotA/TolQ/ExbB proton channel family BI364_14225 PF03061 Thioesterase superfamily BI364_14230 PF00072 Response regulator receiver domain BI364_14230 PF00158 Sigma-54 interaction domain BI364_14240 PF00672 HAMP domain BI364_14240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_14240 PF00512 His Kinase A (phospho-acceptor) domain BI364_14250 PF17864 RuvB AAA lid domain BI364_14250 PF05491 RuvB C-terminal winged helix domain BI364_14250 PF05496 Holliday junction DNA helicase RuvB P-loop domain BI364_14255 PF07499 RuvA, C-terminal domain BI364_14255 PF01330 RuvA N terminal domain BI364_14260 PF02075 Crossover junction endodeoxyribonuclease RuvC BI364_14265 PF01709 Transcriptional regulator BI364_14275 PF00293 NUDIX domain BI364_14280 PF01336 OB-fold nucleic acid binding domain BI364_14280 PF02938 GAD domain BI364_14280 PF00152 tRNA synthetases class II (D, K and N) BI364_14300 PF00106 short chain dehydrogenase BI364_14315 PF07724 AAA domain (Cdc48 subfamily) BI364_14315 PF10431 C-terminal, D2-small domain, of ClpB protein BI364_14315 PF00004 ATPase family associated with various cellular activities (AAA) BI364_14315 PF17871 AAA lid domain BI364_14315 PF02861 Clp amino terminal domain, pathogenicity island component BI364_14325 PF01327 Polypeptide deformylase BI364_14345 PF01479 S4 domain BI364_14345 PF00849 RNA pseudouridylate synthase BI364_14350 PF13525 Outer membrane lipoprotein BI364_14355 PF00881 Nitroreductase family BI364_14360 PF00543 Nitrogen regulatory protein P-II BI364_14365 PF00795 Carbon-nitrogen hydrolase BI364_14365 PF02540 NAD synthase BI364_14370 PF00549 CoA-ligase BI364_14370 PF02629 CoA binding domain BI364_14375 PF08442 ATP-grasp domain BI364_14375 PF00549 CoA-ligase BI364_14385 PF00512 His Kinase A (phospho-acceptor) domain BI364_14385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_14390 PF00158 Sigma-54 interaction domain BI364_14390 PF00072 Response regulator receiver domain BI364_14390 PF02954 Bacterial regulatory protein, Fis family BI364_14400 PF07963 Prokaryotic N-terminal methylation motif BI364_14400 PF00114 Pilin (bacterial filament) BI364_14410 PF00535 Glycosyl transferase family 2 BI364_14415 PF00534 Glycosyl transferases group 1 BI364_14415 PF13439 Glycosyltransferase Family 4 BI364_14425 PF13439 Glycosyltransferase Family 4 BI364_14425 PF00534 Glycosyl transferases group 1 BI364_14430 PF00534 Glycosyl transferases group 1 BI364_14430 PF13439 Glycosyltransferase Family 4 BI364_14440 PF00437 Type II/IV secretion system protein BI364_14440 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BI364_14445 PF00482 Type II secretion system (T2SS), protein F BI364_14450 PF01478 Type IV leader peptidase family BI364_14450 PF06750 Bacterial Peptidase A24 N-terminal domain BI364_14455 PF01121 Dephospho-CoA kinase BI364_14470 PF07072 Cell division protein BI364_14485 PF01960 ArgJ family BI364_14490 PF07516 SecA Wing and Scaffold domain BI364_14490 PF02810 SEC-C motif BI364_14490 PF01043 SecA preprotein cross-linking domain BI364_14490 PF07517 SecA DEAD-like domain BI364_14495 PF01464 Transglycosylase SLT domain BI364_14495 PF10145 Phage-related minor tail protein BI364_14495 PF01551 Peptidase family M23 BI364_14500 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BI364_14510 PF00091 Tubulin/FtsZ family, GTPase domain BI364_14510 PF12327 FtsZ family, C-terminal domain BI364_14515 PF02491 SHS2 domain inserted in FTSA BI364_14520 PF03799 Cell division protein FtsQ BI364_14520 PF08478 POTRA domain, FtsQ-type BI364_14525 PF07478 D-ala D-ala ligase C-terminus BI364_14525 PF01820 D-ala D-ala ligase N-terminus BI364_14535 PF08245 Mur ligase middle domain BI364_14535 PF02875 Mur ligase family, glutamate ligase domain BI364_14535 PF01225 Mur ligase family, catalytic domain BI364_14540 PF03033 Glycosyltransferase family 28 N-terminal domain BI364_14540 PF04101 Glycosyltransferase family 28 C-terminal domain BI364_14545 PF01098 Cell cycle protein BI364_14550 PF08245 Mur ligase middle domain BI364_14550 PF02875 Mur ligase family, glutamate ligase domain BI364_14555 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BI364_14555 PF00953 Glycosyl transferase family 4 BI364_14560 PF01225 Mur ligase family, catalytic domain BI364_14560 PF02875 Mur ligase family, glutamate ligase domain BI364_14560 PF08245 Mur ligase middle domain BI364_14565 PF01225 Mur ligase family, catalytic domain BI364_14565 PF08245 Mur ligase middle domain BI364_14565 PF02875 Mur ligase family, glutamate ligase domain BI364_14570 PF00905 Penicillin binding protein transpeptidase domain BI364_14570 PF03717 Penicillin-binding Protein dimerisation domain BI364_14575 PF04999 Cell division protein FtsL BI364_14580 PF01795 MraW methylase family BI364_14585 PF02381 MraZ protein, putative antitoxin-like BI364_14595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BI364_14600 PF04348 LppC putative lipoprotein BI364_14605 PF02021 Uncharacterised protein family UPF0102 BI364_14610 PF13580 SIS domain BI364_14615 PF02913 FAD linked oxidases, C-terminal domain BI364_14615 PF01565 FAD binding domain BI364_14620 PF04386 Stringent starvation protein B BI364_14625 PF00043 Glutathione S-transferase, C-terminal domain BI364_14625 PF02798 Glutathione S-transferase, N-terminal domain BI364_14630 PF02167 Cytochrome C1 family BI364_14635 PF00033 Cytochrome b/b6/petB BI364_14635 PF00032 Cytochrome b(C-terminal)/b6/petD BI364_14640 PF00355 Rieske [2Fe-2S] domain BI364_14640 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BI364_14645 PF01784 NIF3 (NGG1p interacting factor 3) BI364_14650 PF00815 Histidinol dehydrogenase BI364_14655 PF00793 DAHP synthetase I family BI364_14660 PF01634 ATP phosphoribosyltransferase BI364_14665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BI364_14675 PF05494 MlaC protein BI364_14680 PF02470 MlaD protein BI364_14685 PF02405 Permease MlaE BI364_14690 PF00005 ABC transporter BI364_14700 PF00296 Luciferase-like monooxygenase BI364_14710 PF01699 Sodium/calcium exchanger protein BI364_14715 PF00571 CBS domain BI364_14715 PF01380 SIS domain BI364_14735 PF00005 ABC transporter BI364_14735 PF12399 Branched-chain amino acid ATP-binding cassette transporter BI364_14740 PF04963 Sigma-54 factor, core binding domain BI364_14740 PF00309 Sigma-54 factor, Activator interacting domain (AID) BI364_14740 PF04552 Sigma-54, DNA binding domain BI364_14745 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BI364_14750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BI364_14755 PF07475 HPr Serine kinase C-terminal domain BI364_14755 PF02603 HPr Serine kinase N terminus BI364_14760 PF03668 P-loop ATPase protein family BI364_14770 PF00381 PTS HPr component phosphorylation site BI364_14775 PF00391 PEP-utilising enzyme, mobile domain BI364_14775 PF05524 PEP-utilising enzyme, N-terminal BI364_14775 PF02896 PEP-utilising enzyme, TIM barrel domain BI364_14780 PF00571 CBS domain BI364_14780 PF03448 MgtE intracellular N domain BI364_14780 PF01769 Divalent cation transporter BI364_14785 PF00578 AhpC/TSA family BI364_14790 PF02896 PEP-utilising enzyme, TIM barrel domain BI364_14790 PF00391 PEP-utilising enzyme, mobile domain BI364_14790 PF05524 PEP-utilising enzyme, N-terminal BI364_14790 PF01590 GAF domain BI364_14810 PF00301 Rubredoxin BI364_14815 PF08543 Phosphomethylpyrimidine kinase BI364_14820 PF02581 Thiamine monophosphate synthase BI364_14830 PF03781 Sulfatase-modifying factor enzyme 1 BI364_14850 PF01740 STAS domain BI364_14850 PF00916 Sulfate permease family BI364_14855 PF00689 Cation transporting ATPase, C-terminus BI364_14855 PF00690 Cation transporter/ATPase, N-terminus BI364_14860 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BI364_14860 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BI364_14870 PF00970 Oxidoreductase FAD-binding domain BI364_14870 PF00042 Globin BI364_14870 PF00175 Oxidoreductase NAD-binding domain BI364_14880 PF03466 LysR substrate binding domain BI364_14880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_14885 PF02678 Pirin BI364_14885 PF17954 Quercetinase C-terminal cupin domain BI364_14895 PF00107 Zinc-binding dehydrogenase BI364_14895 PF08240 Alcohol dehydrogenase GroES-like domain BI364_14900 PF00581 Rhodanese-like domain BI364_14905 PF01625 Peptide methionine sulfoxide reductase BI364_14935 PF00512 His Kinase A (phospho-acceptor) domain BI364_14935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_14940 PF02954 Bacterial regulatory protein, Fis family BI364_14940 PF00072 Response regulator receiver domain BI364_14960 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BI364_14965 PF00563 EAL domain BI364_14965 PF00990 Diguanylate cyclase, GGDEF domain BI364_14965 PF08448 PAS fold BI364_15025 PF13538 UvrD-like helicase C-terminal domain BI364_15030 PF13361 UvrD-like helicase C-terminal domain BI364_15030 PF00580 UvrD/REP helicase N-terminal domain BI364_15030 PF12705 PD-(D/E)XK nuclease superfamily BI364_15035 PF17946 RecC C-terminal domain BI364_15040 PF05552 Conserved TM helix BI364_15040 PF00924 Mechanosensitive ion channel BI364_15050 PF00873 AcrB/AcrD/AcrF family BI364_15065 PF02597 ThiS family BI364_15065 PF05690 Thiazole biosynthesis protein ThiG BI364_15070 PF05690 Thiazole biosynthesis protein ThiG BI364_15075 PF02390 Putative methyltransferase BI364_15080 PF00027 Cyclic nucleotide-binding domain BI364_15080 PF00325 Bacterial regulatory proteins, crp family BI364_15085 PF13545 Crp-like helix-turn-helix domain BI364_15085 PF00027 Cyclic nucleotide-binding domain BI364_15090 PF00534 Glycosyl transferases group 1 BI364_15090 PF00862 Sucrose synthase BI364_15095 PF00534 Glycosyl transferases group 1 BI364_15095 PF13439 Glycosyltransferase Family 4 BI364_15110 PF13462 Thioredoxin BI364_15115 PF01578 Cytochrome C assembly protein BI364_15120 PF05140 ResB-like family BI364_15125 PF00034 Cytochrome c BI364_15130 PF00034 Cytochrome c BI364_15140 PF01636 Phosphotransferase enzyme family BI364_15145 PF03641 Possible lysine decarboxylase BI364_15155 PF13396 Phospholipase_D-nuclease N-terminal BI364_15155 PF13091 PLD-like domain BI364_15170 PF13361 UvrD-like helicase C-terminal domain BI364_15170 PF00580 UvrD/REP helicase N-terminal domain BI364_15175 PF00672 HAMP domain BI364_15175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BI364_15185 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BI364_15195 PF02167 Cytochrome C1 family BI364_15200 PF04324 BFD-like [2Fe-2S] binding domain BI364_15200 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BI364_15200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BI364_15200 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_15200 PF18267 Rubredoxin NAD+ reductase C-terminal domain BI364_15205 PF00032 Cytochrome b(C-terminal)/b6/petD BI364_15205 PF00033 Cytochrome b/b6/petB BI364_15210 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BI364_15210 PF00355 Rieske [2Fe-2S] domain BI364_15225 PF00578 AhpC/TSA family BI364_15230 PF00127 Copper binding proteins, plastocyanin/azurin family BI364_15235 PF01040 UbiA prenyltransferase family BI364_15240 PF02628 Cytochrome oxidase assembly protein BI364_15255 PF00115 Cytochrome C and Quinol oxidase polypeptide I BI364_15260 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BI364_15260 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BI364_15280 PF00072 Response regulator receiver domain BI364_15290 PF01152 Bacterial-like globin BI364_15300 PF04247 Invasion gene expression up-regulator, SirB BI364_15305 PF02492 CobW/HypB/UreG, nucleotide-binding domain BI364_15310 PF01730 UreF BI364_15315 PF05194 UreE urease accessory protein, C-terminal domain BI364_15315 PF02814 UreE urease accessory protein, N-terminal domain BI364_15335 PF02633 Creatinine amidohydrolase BI364_15340 PF00857 Isochorismatase family BI364_15345 PF00753 Metallo-beta-lactamase superfamily BI364_15355 PF01042 Endoribonuclease L-PSP BI364_15360 PF00583 Acetyltransferase (GNAT) family BI364_15365 PF00563 EAL domain BI364_15365 PF00990 Diguanylate cyclase, GGDEF domain BI364_15365 PF03707 Bacterial signalling protein N terminal repeat BI364_15370 PF00248 Aldo/keto reductase family BI364_15375 PF00141 Peroxidase BI364_15405 PF00484 Carbonic anhydrase BI364_15415 PF02954 Bacterial regulatory protein, Fis family BI364_15415 PF00072 Response regulator receiver domain BI364_15415 PF00158 Sigma-54 interaction domain BI364_15435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_15435 PF03466 LysR substrate binding domain BI364_15460 PF00528 Binding-protein-dependent transport system inner membrane component BI364_15465 PF00005 ABC transporter BI364_15470 PF00491 Arginase family BI364_15480 PF05193 Peptidase M16 inactive domain BI364_15480 PF00675 Insulinase (Peptidase family M16) BI364_15490 PF00857 Isochorismatase family BI364_15500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_15500 PF03466 LysR substrate binding domain BI364_15505 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BI364_15505 PF02272 DHHA1 domain BI364_15505 PF01411 tRNA synthetases class II (A) BI364_15515 PF01810 LysE type translocator BI364_15520 PF01965 DJ-1/PfpI family BI364_15530 PF00893 Small Multidrug Resistance protein BI364_15535 PF11870 Domain of unknown function (DUF3390) BI364_15535 PF02589 LUD domain BI364_15535 PF13183 4Fe-4S dicluster domain BI364_15540 PF02754 Cysteine-rich domain BI364_15545 PF16884 N-terminal domain of oxidoreductase BI364_15545 PF00107 Zinc-binding dehydrogenase BI364_15550 PF00465 Iron-containing alcohol dehydrogenase BI364_15565 PF00563 EAL domain BI364_15565 PF00990 Diguanylate cyclase, GGDEF domain BI364_15565 PF03707 Bacterial signalling protein N terminal repeat BI364_15590 PF00699 Urease beta subunit BI364_15600 PF00547 Urease, gamma subunit BI364_15605 PF01774 UreD urease accessory protein BI364_15610 PF05166 YcgL domain BI364_15620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BI364_15620 PF17944 Arginine decarboxylase C-terminal helical extension BI364_15620 PF17810 Arginine decarboxylase helical bundle domain BI364_15625 PF17284 Spermidine synthase tetramerisation domain BI364_15630 PF01022 Bacterial regulatory protein, arsR family BI364_15635 PF02040 Arsenical pump membrane protein BI364_15640 PF01451 Low molecular weight phosphotyrosine protein phosphatase BI364_15645 PF06736 Protein of unknown function (DUF1211) BI364_15650 PF03649 Uncharacterised protein family (UPF0014) BI364_15655 PF00005 ABC transporter BI364_15660 PF00909 Ammonium Transporter Family BI364_15665 PF00543 Nitrogen regulatory protein P-II BI364_15675 PF04380 Membrane fusogenic activity BI364_15680 PF01078 Magnesium chelatase, subunit ChlI BI364_15680 PF13335 Magnesium chelatase, subunit ChlI C-terminal BI364_15685 PF12008 Type I restriction and modification enzyme - subunit R C terminal BI364_15685 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BI364_15685 PF18766 SWI2/SNF2 ATPase BI364_15710 PF12161 HsdM N-terminal domain BI364_15710 PF02384 N-6 DNA Methylase BI364_15720 PF11798 IMS family HHH motif BI364_15720 PF11799 impB/mucB/samB family C-terminal domain BI364_15720 PF00817 impB/mucB/samB family BI364_15725 PF01609 Transposase DDE domain BI364_15725 PF05598 Transposase domain (DUF772) BI364_15745 PF07508 Recombinase BI364_15745 PF13408 Recombinase zinc beta ribbon domain BI364_15745 PF00239 Resolvase, N terminal domain BI364_15750 PF01078 Magnesium chelatase, subunit ChlI BI364_15750 PF13335 Magnesium chelatase, subunit ChlI C-terminal BI364_15760 PF00005 ABC transporter BI364_15765 PF00528 Binding-protein-dependent transport system inner membrane component BI364_15770 PF00528 Binding-protein-dependent transport system inner membrane component BI364_15775 PF00497 Bacterial extracellular solute-binding proteins, family 3 BI364_15780 PF13458 Periplasmic binding protein BI364_15785 PF13458 Periplasmic binding protein BI364_15790 PF11862 Domain of unknown function (DUF3382) BI364_15790 PF02653 Branched-chain amino acid transport system / permease component BI364_15795 PF02653 Branched-chain amino acid transport system / permease component BI364_15800 PF00005 ABC transporter BI364_15810 PF01914 MarC family integral membrane protein BI364_15855 PF08241 Methyltransferase domain BI364_15870 PF02653 Branched-chain amino acid transport system / permease component BI364_15880 PF00005 ABC transporter BI364_15880 PF12399 Branched-chain amino acid ATP-binding cassette transporter BI364_15885 PF00005 ABC transporter BI364_15890 PF00583 Acetyltransferase (GNAT) family BI364_15890 PF00814 Glycoprotease family BI364_15930 PF13458 Periplasmic binding protein BI364_15950 PF00149 Calcineurin-like phosphoesterase BI364_15955 PF00005 ABC transporter BI364_15955 PF08402 TOBE domain BI364_15980 PF17845 FbpC C-terminal regulatory nucleotide binding domain BI364_15980 PF00005 ABC transporter BI364_16000 PF02472 Biopolymer transport protein ExbD/TolR BI364_16005 PF01618 MotA/TolQ/ExbB proton channel family BI364_16015 PF00072 Response regulator receiver domain BI364_16015 PF00486 Transcriptional regulatory protein, C terminal BI364_16020 PF00486 Transcriptional regulatory protein, C terminal BI364_16020 PF00072 Response regulator receiver domain BI364_16035 PF00486 Transcriptional regulatory protein, C terminal BI364_16035 PF00072 Response regulator receiver domain BI364_16040 PF00360 Phytochrome region BI364_16040 PF00990 Diguanylate cyclase, GGDEF domain BI364_16040 PF00563 EAL domain BI364_16040 PF01590 GAF domain BI364_16045 PF03600 Citrate transporter BI364_16050 PF02080 TrkA-C domain BI364_16050 PF03600 Citrate transporter BI364_16055 PF00485 Phosphoribulokinase / Uridine kinase family BI364_16070 PF00248 Aldo/keto reductase family BI364_16080 PF00899 ThiF family BI364_16085 PF01925 Sulfite exporter TauE/SafE BI364_16110 PF05746 DALR anticodon binding domain BI364_16110 PF02092 Glycyl-tRNA synthetase beta subunit BI364_16115 PF02091 Glycyl-tRNA synthetase alpha subunit BI364_16135 PF01545 Cation efflux family BI364_16140 PF00120 Glutamine synthetase, catalytic domain BI364_16140 PF03951 Glutamine synthetase, beta-Grasp domain BI364_16150 PF00512 His Kinase A (phospho-acceptor) domain BI364_16150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BI364_16150 PF00989 PAS fold BI364_16155 PF00158 Sigma-54 interaction domain BI364_16155 PF02954 Bacterial regulatory protein, Fis family BI364_16155 PF00072 Response regulator receiver domain BI364_16160 PF01180 Dihydroorotate dehydrogenase BI364_16165 PF00588 SpoU rRNA Methylase family BI364_16170 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BI364_16170 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BI364_16175 PF02556 Preprotein translocase subunit SecB BI364_16180 PF00462 Glutaredoxin BI364_16185 PF00581 Rhodanese-like domain BI364_16195 PF01551 Peptidase family M23 BI364_16200 PF03572 Peptidase family S41 BI364_16200 PF13180 PDZ domain BI364_16205 PF04748 Divergent polysaccharide deacetylase BI364_16210 PF01467 Cytidylyltransferase-like BI364_16215 PF00037 4Fe-4S binding domain BI364_16225 PF04820 Tryptophan halogenase BI364_16235 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BI364_16235 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BI364_16235 PF06827 Zinc finger found in FPG and IleRS BI364_16245 PF00550 Phosphopantetheine attachment site BI364_16255 PF13193 AMP-binding enzyme C-terminal domain BI364_16255 PF00501 AMP-binding enzyme BI364_16260 PF07977 FabA-like domain BI364_16280 PF02801 Beta-ketoacyl synthase, C-terminal domain BI364_16280 PF00109 Beta-ketoacyl synthase, N-terminal domain BI364_16295 PF00535 Glycosyl transferase family 2 BI364_16310 PF00072 Response regulator receiver domain BI364_16315 PF00005 ABC transporter BI364_16320 PF00005 ABC transporter BI364_16320 PF12399 Branched-chain amino acid ATP-binding cassette transporter BI364_16340 PF07722 Peptidase C26 BI364_16345 PF00563 EAL domain BI364_16345 PF00990 Diguanylate cyclase, GGDEF domain BI364_16345 PF03707 Bacterial signalling protein N terminal repeat BI364_16365 PF00072 Response regulator receiver domain BI364_16365 PF00486 Transcriptional regulatory protein, C terminal BI364_16390 PF00990 Diguanylate cyclase, GGDEF domain BI364_16395 PF00665 Integrase core domain BI364_16395 PF13333 Integrase core domain BI364_16395 PF13276 HTH-like domain BI364_16405 PF03707 Bacterial signalling protein N terminal repeat BI364_16405 PF00563 EAL domain BI364_16405 PF00990 Diguanylate cyclase, GGDEF domain BI364_16430 PF06445 GyrI-like small molecule binding domain BI364_16455 PF10137 Predicted nucleotide-binding protein containing TIR-like domain BI364_16460 PF00271 Helicase conserved C-terminal domain BI364_16460 PF11898 Domain of unknown function (DUF3418) BI364_16460 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BI364_16460 PF00270 DEAD/DEAH box helicase BI364_16460 PF04408 Helicase associated domain (HA2) BI364_16465 PF03352 Methyladenine glycosylase BI364_16480 PF01212 Beta-eliminating lyase BI364_16490 PF05746 DALR anticodon binding domain BI364_16490 PF03485 Arginyl tRNA synthetase N terminal domain BI364_16490 PF00750 tRNA synthetases class I (R) BI364_16495 PF18074 Primosomal protein N C-terminal domain BI364_16495 PF17764 3′ DNA-binding domain (3′BD) BI364_16495 PF00271 Helicase conserved C-terminal domain BI364_16495 PF00270 DEAD/DEAH box helicase BI364_16495 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BI364_16500 PF02233 NAD(P) transhydrogenase beta subunit BI364_16505 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BI364_16510 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BI364_16510 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BI364_16520 PF00762 Ferrochelatase BI364_16530 PF01965 DJ-1/PfpI family BI364_16535 PF00583 Acetyltransferase (GNAT) family BI364_16545 PF00365 Phosphofructokinase BI364_16550 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BI364_16560 PF00561 alpha/beta hydrolase fold BI364_16570 PF12728 Helix-turn-helix domain BI364_16585 PF08502 LeuA allosteric (dimerisation) domain BI364_16585 PF00682 HMGL-like BI364_16605 PF00155 Aminotransferase class I and II BI364_16605 PF00392 Bacterial regulatory proteins, gntR family BI364_16610 PF02567 Phenazine biosynthesis-like protein BI364_16615 PF01063 Amino-transferase class IV BI364_16640 PF00248 Aldo/keto reductase family BI364_16645 PF00990 Diguanylate cyclase, GGDEF domain BI364_16645 PF03707 Bacterial signalling protein N terminal repeat BI364_16645 PF00563 EAL domain BI364_16655 PF00348 Polyprenyl synthetase BI364_16660 PF00829 Ribosomal prokaryotic L21 protein BI364_16665 PF01016 Ribosomal L27 protein BI364_16670 PF01018 GTP1/OBG BI364_16670 PF01926 50S ribosome-binding GTPase BI364_16675 PF00696 Amino acid kinase family BI364_16675 PF01472 PUA domain BI364_16680 PF01649 Ribosomal protein S20 BI364_16685 PF03023 Lipid II flippase MurJ BI364_16690 PF02954 Bacterial regulatory protein, Fis family BI364_16690 PF00072 Response regulator receiver domain BI364_16690 PF00158 Sigma-54 interaction domain BI364_16720 PF01687 Riboflavin kinase BI364_16720 PF06574 FAD synthetase BI364_16725 PF00133 tRNA synthetases class I (I, L, M and V) BI364_16725 PF08264 Anticodon-binding domain of tRNA BI364_16725 PF06827 Zinc finger found in FPG and IleRS BI364_16730 PF01252 Signal peptidase (SPase) II BI364_16735 PF00849 RNA pseudouridylate synthase BI364_16740 PF13183 4Fe-4S dicluster domain BI364_16740 PF02754 Cysteine-rich domain BI364_16745 PF01565 FAD binding domain BI364_16750 PF01565 FAD binding domain BI364_16750 PF02913 FAD linked oxidases, C-terminal domain BI364_16760 PF00717 Peptidase S24-like BI364_16760 PF01726 LexA DNA binding domain BI364_16765 PF03618 Kinase/pyrophosphorylase BI364_16770 PF00391 PEP-utilising enzyme, mobile domain BI364_16770 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BI364_16770 PF02896 PEP-utilising enzyme, TIM barrel domain BI364_16775 PF00005 ABC transporter BI364_16780 PF00528 Binding-protein-dependent transport system inner membrane component BI364_16790 PF07992 Pyridine nucleotide-disulphide oxidoreductase BI364_16795 PF00037 4Fe-4S binding domain BI364_16795 PF11953 Domain of unknown function (DUF3470) BI364_16810 PF02910 Fumarate reductase flavoprotein C-term BI364_16810 PF00890 FAD binding domain BI364_16815 PF07702 UTRA domain BI364_16815 PF00392 Bacterial regulatory proteins, gntR family BI364_16825 PF03466 LysR substrate binding domain BI364_16825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BI364_16830 PF02082 Transcriptional regulator BI364_16850 PF00892 EamA-like transporter family BI364_16855 PF00850 Histone deacetylase domain BI364_16860 PF00583 Acetyltransferase (GNAT) family BI364_16860 PF13380 CoA binding domain BI364_16860 PF13607 Succinyl-CoA ligase like flavodoxin domain BI364_16865 PF00230 Major intrinsic protein BI364_16870 PF00753 Metallo-beta-lactamase superfamily BI364_16875 PF02705 K+ potassium transporter BI364_16880 PF00005 ABC transporter BI364_16895 PF08240 Alcohol dehydrogenase GroES-like domain BI364_16895 PF00107 Zinc-binding dehydrogenase BI364_16900 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BI364_16905 PF03061 Thioesterase superfamily BI364_16910 PF00501 AMP-binding enzyme BI364_16915 PF13614 AAA domain BI364_16935 PF02445 Quinolinate synthetase A protein BI364_16950 PF01047 MarR family BI364_16955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BI364_16955 PF00529 HlyD membrane-fusion protein of T1SS BI364_16960 PF07690 Major Facilitator Superfamily BI364_16965 PF00582 Universal stress protein family BI364_16975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BI364_16980 PF02401 LytB protein BI364_16995 PF08334 Type II secretion system (T2SS), protein G BI364_16995 PF07963 Prokaryotic N-terminal methylation motif BI364_17000 PF05567 Neisseria PilC beta-propeller domain BI364_17035 PF00106 short chain dehydrogenase BI364_17050 PF01380 SIS domain BI364_17055 PF12804 MobA-like NTP transferase domain BI364_17055 PF00132 Bacterial transferase hexapeptide (six repeats) BI364_17060 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BI364_17060 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BI364_17065 PF02874 ATP synthase alpha/beta family, beta-barrel domain BI364_17065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BI364_17070 PF00231 ATP synthase BI364_17075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BI364_17075 PF00306 ATP synthase alpha/beta chain, C terminal domain BI364_17075 PF02874 ATP synthase alpha/beta family, beta-barrel domain BI364_17080 PF00213 ATP synthase delta (OSCP) subunit BI364_17085 PF00430 ATP synthase B/B' CF(0) BI364_17090 PF00137 ATP synthase subunit C BI364_17095 PF00119 ATP synthase A chain BI364_17105 PF17762 HTH domain found in ParB protein BI364_17105 PF02195 ParB-like nuclease domain BI364_17110 PF13614 AAA domain BI364_17115 PF02527 rRNA small subunit methyltransferase G BI364_17125 PF12631 MnmE helical domain BI364_17125 PF01926 50S ribosome-binding GTPase BI364_17125 PF10396 GTP-binding protein TrmE N-terminus BI364_17130 PF14849 YidC periplasmic domain BI364_17130 PF02096 60Kd inner membrane protein BI364_17135 PF00825 Ribonuclease P BI364_17140 PF00468 Ribosomal protein L34