locus-tag class description EQM13_00005 PF00308 Bacterial dnaA protein EQM13_00005 PF08299 Bacterial dnaA protein helix-turn-helix EQM13_00005 PF11638 DnaA N-terminal domain EQM13_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EQM13_00010 PF02767 DNA polymerase III beta subunit, central domain EQM13_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EQM13_00020 PF02463 RecF/RecN/SMC N terminal domain EQM13_00030 PF00204 DNA gyrase B EQM13_00030 PF00986 DNA gyrase B subunit, carboxyl terminus EQM13_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_00030 PF01751 Toprim domain EQM13_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller EQM13_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A EQM13_00040 PF01740 STAS domain EQM13_00045 PF13581 Histidine kinase-like ATPase domain EQM13_00050 PF04542 Sigma-70 region 2 EQM13_00050 PF04539 Sigma-70 region 3 EQM13_00050 PF04545 Sigma-70, region 4 EQM13_00075 PF00689 Cation transporting ATPase, C-terminus EQM13_00075 PF00690 Cation transporter/ATPase, N-terminus EQM13_00080 PF01546 Peptidase family M20/M25/M40 EQM13_00085 PF00155 Aminotransferase class I and II EQM13_00135 PF00924 Mechanosensitive ion channel EQM13_00140 PF06107 Bacterial protein of unknown function (DUF951) EQM13_00145 PF00155 Aminotransferase class I and II EQM13_00150 PF01250 Ribosomal protein S6 EQM13_00155 PF00436 Single-strand binding protein family EQM13_00160 PF01084 Ribosomal protein S18 EQM13_00175 PF02272 DHHA1 domain EQM13_00175 PF01368 DHH family EQM13_00180 PF03948 Ribosomal protein L9, C-terminal domain EQM13_00180 PF01281 Ribosomal protein L9, N-terminal domain EQM13_00185 PF00772 DnaB-like helicase N terminal domain EQM13_00185 PF03796 DnaB-like helicase C terminal domain EQM13_00205 PF02829 3H domain EQM13_00205 PF08279 HTH domain EQM13_00215 PF00106 short chain dehydrogenase EQM13_00225 PF14437 MafB19-like deaminase EQM13_00235 PF00005 ABC transporter EQM13_00245 PF00486 Transcriptional regulatory protein, C terminal EQM13_00245 PF00072 Response regulator receiver domain EQM13_00250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_00295 PF00395 S-layer homology domain EQM13_00300 PF04026 SpoVG EQM13_00310 PF01478 Type IV leader peptidase family EQM13_00310 PF06750 Bacterial Peptidase A24 N-terminal domain EQM13_00325 PF00437 Type II/IV secretion system protein EQM13_00405 PF01551 Peptidase family M23 EQM13_00440 PF01807 CHC2 zinc finger EQM13_00440 PF08275 DNA primase catalytic core, N-terminal domain EQM13_00465 PF01381 Helix-turn-helix EQM13_00470 PF00005 ABC transporter EQM13_00480 PF02673 Bacitracin resistance protein BacA EQM13_00495 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EQM13_00580 PF07690 Major Facilitator Superfamily EQM13_00600 PF01047 MarR family EQM13_00640 PF17910 FeoB cytosolic helical domain EQM13_00640 PF02421 Ferrous iron transport protein B EQM13_00640 PF07670 Nucleoside recognition EQM13_00640 PF07664 Ferrous iron transport protein B C terminus EQM13_00640 PF04023 FeoA domain EQM13_00660 PF01066 CDP-alcohol phosphatidyltransferase EQM13_00670 PF10609 NUBPL iron-transfer P-loop NTPase EQM13_00675 PF02001 Protein of unknown function DUF134 EQM13_00680 PF00578 AhpC/TSA family EQM13_00685 PF02683 Cytochrome C biogenesis protein transmembrane region EQM13_00685 PF11412 Disulphide bond corrector protein DsbC EQM13_00690 PF01022 Bacterial regulatory protein, arsR family EQM13_00700 PF03611 PTS system sugar-specific permease component EQM13_00705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_00710 PF00107 Zinc-binding dehydrogenase EQM13_00710 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_00715 PF00596 Class II Aldolase and Adducin N-terminal domain EQM13_00725 PF03323 Bacillus/Clostridium GerA spore germination protein EQM13_00745 PF18011 C-terminal domain found in long catalases EQM13_00745 PF06628 Catalase-related immune-responsive EQM13_00745 PF00199 Catalase EQM13_00750 PF00486 Transcriptional regulatory protein, C terminal EQM13_00750 PF00072 Response regulator receiver domain EQM13_00755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_00755 PF00672 HAMP domain EQM13_00755 PF13426 PAS domain EQM13_00755 PF00512 His Kinase A (phospho-acceptor) domain EQM13_00760 PF00005 ABC transporter EQM13_00775 PF00583 Acetyltransferase (GNAT) family EQM13_00775 PF13508 Acetyltransferase (GNAT) domain EQM13_00790 PF02673 Bacitracin resistance protein BacA EQM13_00795 PF00561 alpha/beta hydrolase fold EQM13_00795 PF08386 TAP-like protein EQM13_00800 PF02277 Phosphoribosyltransferase EQM13_00805 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EQM13_00810 PF02654 Cobalamin-5-phosphate synthase EQM13_00820 PF00749 tRNA synthetases class I (E and Q), catalytic domain EQM13_00885 PF16886 ATPsynthase alpha/beta subunit N-term extension EQM13_00885 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQM13_00885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQM13_00890 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQM13_00890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQM13_00895 PF01813 ATP synthase subunit D EQM13_00900 PF17863 AAA lid domain EQM13_00900 PF07726 ATPase family associated with various cellular activities (AAA) EQM13_00905 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EQM13_00905 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EQM13_00905 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain EQM13_00920 PF07664 Ferrous iron transport protein B C terminus EQM13_00920 PF07670 Nucleoside recognition EQM13_00920 PF02421 Ferrous iron transport protein B EQM13_00920 PF17910 FeoB cytosolic helical domain EQM13_00925 PF07670 Nucleoside recognition EQM13_00925 PF02421 Ferrous iron transport protein B EQM13_00925 PF17910 FeoB cytosolic helical domain EQM13_00925 PF07664 Ferrous iron transport protein B C terminus EQM13_00925 PF04023 FeoA domain EQM13_00950 PF00403 Heavy-metal-associated domain EQM13_00960 PF02583 Metal-sensitive transcriptional repressor EQM13_00965 PF17871 AAA lid domain EQM13_00965 PF07724 AAA domain (Cdc48 subfamily) EQM13_00965 PF02861 Clp amino terminal domain, pathogenicity island component EQM13_00965 PF10431 C-terminal, D2-small domain, of ClpB protein EQM13_00965 PF00004 ATPase family associated with various cellular activities (AAA) EQM13_00970 PF00226 DnaJ domain EQM13_00970 PF01556 DnaJ C terminal domain EQM13_00975 PF03109 ABC1 family EQM13_01000 PF00700 Bacterial flagellin C-terminal helical region EQM13_01000 PF00669 Bacterial flagellin N-terminal helical region EQM13_01020 PF04055 Radical SAM superfamily EQM13_01020 PF13186 Iron-sulfur cluster-binding domain EQM13_01025 PF01695 IstB-like ATP binding protein EQM13_01040 PF00665 Integrase core domain EQM13_01040 PF02796 Helix-turn-helix domain of resolvase EQM13_01045 PF00005 ABC transporter EQM13_01045 PF00664 ABC transporter transmembrane region EQM13_01050 PF12169 DNA polymerase III subunits gamma and tau domain III EQM13_01055 PF02575 YbaB/EbfC DNA-binding family EQM13_01060 PF13662 Toprim domain EQM13_01060 PF02132 RecR protein EQM13_01095 PF01555 DNA methylase EQM13_01095 PF18273 Type III R-M EcoP15I C-terminal domain EQM13_01140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EQM13_01195 PF01131 DNA topoisomerase EQM13_01195 PF01751 Toprim domain EQM13_01200 PF00145 C-5 cytosine-specific DNA methylase EQM13_01210 PF04002 RadC-like JAB domain EQM13_01250 PF00004 ATPase family associated with various cellular activities (AAA) EQM13_01250 PF05362 Lon protease (S16) C-terminal proteolytic domain EQM13_01250 PF02190 ATP-dependent protease La (LON) substrate-binding domain EQM13_01265 PF03432 Relaxase/Mobilisation nuclease domain EQM13_01310 PF01695 IstB-like ATP binding protein EQM13_01325 PF01726 LexA DNA binding domain EQM13_01325 PF00717 Peptidase S24-like EQM13_01375 PF02463 RecF/RecN/SMC N terminal domain EQM13_01380 PF00580 UvrD/REP helicase N-terminal domain EQM13_01380 PF13361 UvrD-like helicase C-terminal domain EQM13_01420 PF03796 DnaB-like helicase C terminal domain EQM13_01420 PF00772 DnaB-like helicase N terminal domain EQM13_01425 PF02899 Phage integrase, N-terminal SAM-like domain EQM13_01425 PF00589 Phage integrase family EQM13_01430 PF01381 Helix-turn-helix EQM13_01445 PF08721 TnsA endonuclease C terminal EQM13_01445 PF08722 TnsA endonuclease N terminal EQM13_01450 PF00665 Integrase core domain EQM13_01455 PF13401 AAA domain EQM13_01455 PF11426 Tn7 transposition regulator TnsC EQM13_01470 PF01548 Transposase EQM13_01470 PF02371 Transposase IS116/IS110/IS902 family EQM13_01495 PF03848 Tellurite resistance protein TehB EQM13_01520 PF01022 Bacterial regulatory protein, arsR family EQM13_01525 PF01758 Sodium Bile acid symporter family EQM13_01575 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit EQM13_01600 PF01381 Helix-turn-helix EQM13_01625 PF13649 Methyltransferase domain EQM13_01640 PF00005 ABC transporter EQM13_01655 PF01523 Putative modulator of DNA gyrase EQM13_01660 PF01381 Helix-turn-helix EQM13_01670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_01675 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_01680 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_01680 PF12911 N-terminal TM domain of oligopeptide transport permease C EQM13_01685 PF00005 ABC transporter EQM13_01685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_01690 PF00005 ABC transporter EQM13_01690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_01695 PF01554 MatE EQM13_01715 PF03611 PTS system sugar-specific permease component EQM13_01725 PF12822 ECF transporter, substrate-specific component EQM13_01730 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EQM13_01730 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EQM13_01735 PF13426 PAS domain EQM13_01735 PF02954 Bacterial regulatory protein, Fis family EQM13_01735 PF00158 Sigma-54 interaction domain EQM13_01745 PF00676 Dehydrogenase E1 component EQM13_01750 PF02779 Transketolase, pyrimidine binding domain EQM13_01750 PF02780 Transketolase, C-terminal domain EQM13_01755 PF01513 ATP-NAD kinase EQM13_01760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EQM13_01760 PF00364 Biotin-requiring enzyme EQM13_01760 PF02817 e3 binding domain EQM13_01765 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQM13_01765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQM13_01770 PF13607 Succinyl-CoA ligase like flavodoxin domain EQM13_01770 PF00583 Acetyltransferase (GNAT) family EQM13_01770 PF13380 CoA binding domain EQM13_01775 PF07685 CobB/CobQ-like glutamine amidotransferase domain EQM13_01775 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EQM13_01780 PF12557 Cob(I)alamin adenosyltransferase N terminal EQM13_01780 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP EQM13_01785 PF02570 Precorrin-8X methylmutase EQM13_01790 PF01888 CbiD EQM13_01795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQM13_01800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQM13_01805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQM13_01810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQM13_01815 PF11761 Cobalamin biosynthesis central region EQM13_01815 PF01890 Cobalamin synthesis G C-terminus EQM13_01815 PF11760 Cobalamin synthesis G N-terminal EQM13_01820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQM13_01820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EQM13_01825 PF02571 Precorrin-6x reductase CbiJ/CobK EQM13_01830 PF06180 Cobalt chelatase (CbiK) EQM13_01835 PF01497 Periplasmic binding protein EQM13_01840 PF01032 FecCD transport family EQM13_01845 PF00005 ABC transporter EQM13_01850 PF00557 Metallopeptidase family M24 EQM13_01850 PF01321 Creatinase/Prolidase N-terminal domain EQM13_01865 PF02653 Branched-chain amino acid transport system / permease component EQM13_01870 PF00005 ABC transporter EQM13_01880 PF01209 ubiE/COQ5 methyltransferase family EQM13_01890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_01895 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_01900 PF12911 N-terminal TM domain of oligopeptide transport permease C EQM13_01900 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_01905 PF00005 ABC transporter EQM13_01905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_01910 PF00005 ABC transporter EQM13_01910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_01915 PF07687 Peptidase dimerisation domain EQM13_01915 PF01546 Peptidase family M20/M25/M40 EQM13_01920 PF01979 Amidohydrolase family EQM13_01925 PF01979 Amidohydrolase family EQM13_01935 PF03051 Peptidase C1-like family EQM13_01945 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EQM13_01950 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EQM13_01950 PF08666 SAF domain EQM13_01970 PF06463 Molybdenum Cofactor Synthesis C EQM13_01970 PF04055 Radical SAM superfamily EQM13_01980 PF06463 Molybdenum Cofactor Synthesis C EQM13_01980 PF04055 Radical SAM superfamily EQM13_01990 PF02687 FtsX-like permease family EQM13_01995 PF00005 ABC transporter EQM13_02010 PF01695 IstB-like ATP binding protein EQM13_02020 PF00005 ABC transporter EQM13_02030 PF00664 ABC transporter transmembrane region EQM13_02030 PF00005 ABC transporter EQM13_02055 PF00665 Integrase core domain EQM13_02055 PF02796 Helix-turn-helix domain of resolvase EQM13_02060 PF00664 ABC transporter transmembrane region EQM13_02060 PF00005 ABC transporter EQM13_02080 PF04055 Radical SAM superfamily EQM13_02080 PF06463 Molybdenum Cofactor Synthesis C EQM13_02100 PF00005 ABC transporter EQM13_02120 PF12796 Ankyrin repeats (3 copies) EQM13_02120 PF13606 Ankyrin repeat EQM13_02125 PF03123 CAT RNA binding domain EQM13_02125 PF00874 PRD domain EQM13_02130 PF01979 Amidohydrolase family EQM13_02160 PF03841 L-seryl-tRNA selenium transferase EQM13_02165 PF07071 KDGP aldolase EQM13_02195 PF00005 ABC transporter EQM13_02195 PF13732 Domain of unknown function (DUF4162) EQM13_02200 PF00512 His Kinase A (phospho-acceptor) domain EQM13_02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_02205 PF00486 Transcriptional regulatory protein, C terminal EQM13_02205 PF00072 Response regulator receiver domain EQM13_02215 PF00874 PRD domain EQM13_02215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_02215 PF05043 Mga helix-turn-helix domain EQM13_02215 PF08279 HTH domain EQM13_02225 PF02378 Phosphotransferase system, EIIC EQM13_02235 PF00232 Glycosyl hydrolase family 1 EQM13_02240 PF00294 pfkB family carbohydrate kinase EQM13_02245 PF00356 Bacterial regulatory proteins, lacI family EQM13_02250 PF00795 Carbon-nitrogen hydrolase EQM13_02255 PF00892 EamA-like transporter family EQM13_02275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_02290 PF03611 PTS system sugar-specific permease component EQM13_02300 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EQM13_02300 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EQM13_02315 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_02325 PF03611 PTS system sugar-specific permease component EQM13_02330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_02335 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_02335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_02340 PF02615 Malate/L-lactate dehydrogenase EQM13_02345 PF00701 Dihydrodipicolinate synthetase family EQM13_02350 PF04199 Putative cyclase EQM13_02355 PF04321 RmlD substrate binding domain EQM13_02365 PF01596 O-methyltransferase EQM13_02390 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EQM13_02390 PF02843 Phosphoribosylglycinamide synthetase, C domain EQM13_02390 PF02844 Phosphoribosylglycinamide synthetase, N domain EQM13_02395 PF01808 AICARFT/IMPCHase bienzyme EQM13_02395 PF02142 MGS-like domain EQM13_02400 PF00551 Formyl transferase EQM13_02405 PF02769 AIR synthase related protein, C-terminal domain EQM13_02405 PF00586 AIR synthase related protein, N-terminal domain EQM13_02410 PF00156 Phosphoribosyl transferase domain EQM13_02415 PF01259 SAICAR synthetase EQM13_02420 PF00731 AIR carboxylase EQM13_02425 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EQM13_02425 PF02769 AIR synthase related protein, C-terminal domain EQM13_02425 PF00586 AIR synthase related protein, N-terminal domain EQM13_02435 PF02595 Glycerate kinase family EQM13_02440 PF01244 Membrane dipeptidase (Peptidase family M19) EQM13_02465 PF00171 Aldehyde dehydrogenase family EQM13_02465 PF00465 Iron-containing alcohol dehydrogenase EQM13_02470 PF13180 PDZ domain EQM13_02480 PF00072 Response regulator receiver domain EQM13_02480 PF00486 Transcriptional regulatory protein, C terminal EQM13_02485 PF00672 HAMP domain EQM13_02485 PF00512 His Kinase A (phospho-acceptor) domain EQM13_02485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_02490 PF08669 Glycine cleavage T-protein C-terminal barrel domain EQM13_02490 PF01571 Aminomethyltransferase folate-binding domain EQM13_02495 PF01597 Glycine cleavage H-protein EQM13_02500 PF02347 Glycine cleavage system P-protein EQM13_02505 PF02347 Glycine cleavage system P-protein EQM13_02510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQM13_02510 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQM13_02525 PF14693 Ribosomal protein TL5, C-terminal domain EQM13_02525 PF01386 Ribosomal L25p family EQM13_02530 PF01871 AMMECR1 EQM13_02530 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EQM13_02540 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain EQM13_02540 PF01276 Orn/Lys/Arg decarboxylase, major domain EQM13_02545 PF02223 Thymidylate kinase EQM13_02550 PF06153 Cyclic-di-AMP receptor EQM13_02555 PF06153 Cyclic-di-AMP receptor EQM13_02560 PF09115 DNA polymerase III, delta subunit, C terminal EQM13_02565 PF04468 PSP1 C-terminal conserved region EQM13_02570 PF12838 4Fe-4S dicluster domain EQM13_02575 PF05175 Methyltransferase small domain EQM13_02580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQM13_02585 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin EQM13_02585 PF18277 AbrB C-terminal domain EQM13_02600 PF07670 Nucleoside recognition EQM13_02605 PF07670 Nucleoside recognition EQM13_02610 PF06725 3D domain EQM13_02615 PF01588 Putative tRNA binding domain EQM13_02615 PF09334 tRNA synthetases class I (M) EQM13_02615 PF08264 Anticodon-binding domain of tRNA EQM13_02620 PF01026 TatD related DNase EQM13_02625 PF01751 Toprim domain EQM13_02625 PF13331 Domain of unknown function (DUF4093) EQM13_02630 PF00398 Ribosomal RNA adenine dimethylase EQM13_02640 PF01022 Bacterial regulatory protein, arsR family EQM13_02650 PF00462 Glutaredoxin EQM13_02675 PF10609 NUBPL iron-transfer P-loop NTPase EQM13_02680 PF02016 LD-carboxypeptidase N-terminal domain EQM13_02680 PF17676 LD-carboxypeptidase C-terminal domain EQM13_02685 PF00107 Zinc-binding dehydrogenase EQM13_02685 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_02690 PF04198 Putative sugar-binding domain EQM13_02700 PF01116 Fructose-bisphosphate aldolase class-II EQM13_02705 PF03608 PTS system enzyme II sorbitol-specific factor EQM13_02720 PF08486 Stage II sporulation protein EQM13_02725 PF06257 Biofilm formation stimulator VEG EQM13_02730 PF03734 L,D-transpeptidase catalytic domain EQM13_02740 PF08544 GHMP kinases C terminal EQM13_02740 PF00288 GHMP kinases N terminal domain EQM13_02745 PF03323 Bacillus/Clostridium GerA spore germination protein EQM13_02750 PF03845 Spore germination protein EQM13_02760 PF09551 Stage II sporulation protein R (spore_II_R) EQM13_02765 PF07486 Cell Wall Hydrolase EQM13_02765 PF01471 Putative peptidoglycan binding domain EQM13_02770 PF14620 YpeB sporulation EQM13_02775 PF01177 Asp/Glu/Hydantoin racemase EQM13_02780 PF00158 Sigma-54 interaction domain EQM13_02780 PF13426 PAS domain EQM13_02780 PF02954 Bacterial regulatory protein, Fis family EQM13_02790 PF04055 Radical SAM superfamily EQM13_02790 PF12544 Lysine-2,3-aminomutase EQM13_02800 PF01713 Smr domain EQM13_02800 PF00488 MutS domain V EQM13_02805 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit EQM13_02810 PF02310 B12 binding domain EQM13_02810 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase EQM13_02835 PF00128 Alpha amylase, catalytic domain EQM13_02835 PF02903 Alpha amylase, N-terminal ig-like domain EQM13_02835 PF00395 S-layer homology domain EQM13_02840 PF01471 Putative peptidoglycan binding domain EQM13_02840 PF03572 Peptidase family S41 EQM13_02840 PF17820 PDZ domain EQM13_02845 PF00395 S-layer homology domain EQM13_02885 PF00128 Alpha amylase, catalytic domain EQM13_02885 PF02903 Alpha amylase, N-terminal ig-like domain EQM13_02885 PF00395 S-layer homology domain EQM13_02890 PF01418 Helix-turn-helix domain, rpiR family EQM13_02890 PF01380 SIS domain EQM13_02895 PF03609 PTS system sorbose-specific iic component EQM13_02900 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_02905 PF03830 PTS system sorbose subfamily IIB component EQM13_02910 PF00144 Beta-lactamase EQM13_02915 PF13580 SIS domain EQM13_02925 PF03186 CobD/Cbib protein EQM13_02930 PF00082 Subtilase family EQM13_02930 PF00082 Subtilase family EQM13_02930 PF05922 Peptidase inhibitor I9 EQM13_02930 PF05922 Peptidase inhibitor I9 EQM13_02935 PF00265 Thymidine kinase EQM13_02950 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EQM13_02950 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EQM13_02955 PF00696 Amino acid kinase family EQM13_02965 PF04227 Indigoidine synthase A like protein EQM13_02970 PF13458 Periplasmic binding protein EQM13_02975 PF02653 Branched-chain amino acid transport system / permease component EQM13_02980 PF11862 Domain of unknown function (DUF3382) EQM13_02980 PF02653 Branched-chain amino acid transport system / permease component EQM13_02985 PF12399 Branched-chain amino acid ATP-binding cassette transporter EQM13_02985 PF00005 ABC transporter EQM13_02990 PF00005 ABC transporter EQM13_02995 PF00381 PTS HPr component phosphorylation site EQM13_03000 PF00158 Sigma-54 interaction domain EQM13_03000 PF03610 PTS system fructose IIA component EQM13_03000 PF00874 PRD domain EQM13_03005 PF03610 PTS system fructose IIA component EQM13_03010 PF03830 PTS system sorbose subfamily IIB component EQM13_03010 PF03610 PTS system fructose IIA component EQM13_03015 PF03609 PTS system sorbose-specific iic component EQM13_03020 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_03035 PF13580 SIS domain EQM13_03040 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_03040 PF00107 Zinc-binding dehydrogenase EQM13_03045 PF00465 Iron-containing alcohol dehydrogenase EQM13_03050 PF00465 Iron-containing alcohol dehydrogenase EQM13_03060 PF03023 Lipid II flippase MurJ EQM13_03065 PF00132 Bacterial transferase hexapeptide (six repeats) EQM13_03065 PF06426 Serine acetyltransferase, N-terminal EQM13_03070 PF01381 Helix-turn-helix EQM13_03080 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain EQM13_03080 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain EQM13_03090 PF00963 Cohesin domain EQM13_03090 PF00395 S-layer homology domain EQM13_03095 PF00082 Subtilase family EQM13_03095 PF02225 PA domain EQM13_03095 PF06280 Fn3-like domain EQM13_03095 PF00746 LPXTG cell wall anchor motif EQM13_03100 PF00684 DnaJ central domain EQM13_03100 PF00226 DnaJ domain EQM13_03100 PF01556 DnaJ C terminal domain EQM13_03110 PF00248 Aldo/keto reductase family EQM13_03120 PF06418 CTP synthase N-terminus EQM13_03120 PF00117 Glutamine amidotransferase class-I EQM13_03125 PF00963 Cohesin domain EQM13_03125 PF00395 S-layer homology domain EQM13_03130 PF00005 ABC transporter EQM13_03130 PF02687 FtsX-like permease family EQM13_03130 PF12704 MacB-like periplasmic core domain EQM13_03140 PF00005 ABC transporter EQM13_03145 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EQM13_03145 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EQM13_03150 PF03061 Thioesterase superfamily EQM13_03155 PF05853 beta-keto acid cleavage enzyme EQM13_03160 PF00923 Transaldolase/Fructose-6-phosphate aldolase EQM13_03165 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded EQM13_03170 PF07498 Rho termination factor, N-terminal domain EQM13_03170 PF07497 Rho termination factor, RNA-binding domain EQM13_03170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQM13_03175 PF01197 Ribosomal protein L31 EQM13_03180 PF07136 Protein of unknown function (DUF1385) EQM13_03185 PF05175 Methyltransferase small domain EQM13_03185 PF17827 PrmC N-terminal domain EQM13_03190 PF03462 PCRF domain EQM13_03190 PF00472 RF-1 domain EQM13_03195 PF02535 ZIP Zinc transporter EQM13_03200 PF03481 Putative GTP-binding controlling metal-binding EQM13_03200 PF01300 Telomere recombination EQM13_03210 PF02502 Ribose/Galactose Isomerase EQM13_03220 PF17099 Tryptophan transporter TrpP EQM13_03225 PF00953 Glycosyl transferase family 4 EQM13_03230 PF02350 UDP-N-acetylglucosamine 2-epimerase EQM13_03235 PF00158 Sigma-54 interaction domain EQM13_03235 PF00989 PAS fold EQM13_03235 PF02954 Bacterial regulatory protein, Fis family EQM13_03240 PF02803 Thiolase, C-terminal domain EQM13_03240 PF00108 Thiolase, N-terminal domain EQM13_03245 PF01144 Coenzyme A transferase EQM13_03250 PF01144 Coenzyme A transferase EQM13_03255 PF02080 TrkA-C domain EQM13_03255 PF02254 TrkA-N domain EQM13_03260 PF02386 Cation transport protein EQM13_03270 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EQM13_03275 PF08486 Stage II sporulation protein EQM13_03280 PF01551 Peptidase family M23 EQM13_03285 PF12116 Stage III sporulation protein D EQM13_03295 PF00460 Flagella basal body rod protein EQM13_03295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EQM13_03300 PF00460 Flagella basal body rod protein EQM13_03300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EQM13_03330 PF02773 S-adenosylmethionine synthetase, C-terminal domain EQM13_03330 PF00438 S-adenosylmethionine synthetase, N-terminal domain EQM13_03330 PF02772 S-adenosylmethionine synthetase, central domain EQM13_03340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_03345 PF02378 Phosphotransferase system, EIIC EQM13_03350 PF07748 Glycosyl hydrolases family 38 C-terminal domain EQM13_03350 PF09261 Alpha mannosidase middle domain EQM13_03350 PF01074 Glycosyl hydrolases family 38 N-terminal domain EQM13_03355 PF08279 HTH domain EQM13_03355 PF05043 Mga helix-turn-helix domain EQM13_03355 PF00874 PRD domain EQM13_03355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_03360 PF01238 Phosphomannose isomerase type I EQM13_03365 PF14490 Helix-hairpin-helix containing domain EQM13_03365 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain EQM13_03365 PF13538 UvrD-like helicase C-terminal domain EQM13_03370 PF14572 Phosphoribosyl synthetase-associated domain EQM13_03370 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EQM13_03390 PF00460 Flagella basal body rod protein EQM13_03390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EQM13_03400 PF00700 Bacterial flagellin C-terminal helical region EQM13_03400 PF00669 Bacterial flagellin N-terminal helical region EQM13_03405 PF02623 FliW protein EQM13_03410 PF02599 Global regulator protein family EQM13_03415 PF00700 Bacterial flagellin C-terminal helical region EQM13_03415 PF00669 Bacterial flagellin N-terminal helical region EQM13_03420 PF02599 Global regulator protein family EQM13_03425 PF00700 Bacterial flagellin C-terminal helical region EQM13_03425 PF00669 Bacterial flagellin N-terminal helical region EQM13_03430 PF01973 Protein of unknown function DUF115 EQM13_03445 PF00005 ABC transporter EQM13_03445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_03455 PF00669 Bacterial flagellin N-terminal helical region EQM13_03455 PF00700 Bacterial flagellin C-terminal helical region EQM13_03455 PF00700 Bacterial flagellin C-terminal helical region EQM13_03455 PF00669 Bacterial flagellin N-terminal helical region EQM13_03465 PF00455 DeoR C terminal sensor domain EQM13_03465 PF08220 DeoR-like helix-turn-helix domain EQM13_03470 PF04055 Radical SAM superfamily EQM13_03475 PF02901 Pyruvate formate lyase-like EQM13_03475 PF01228 Glycine radical EQM13_03480 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EQM13_03485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_03490 PF02378 Phosphotransferase system, EIIC EQM13_03510 PF00483 Nucleotidyl transferase EQM13_03515 PF02348 Cytidylyltransferase EQM13_03520 PF02350 UDP-N-acetylglucosamine 2-epimerase EQM13_03525 PF03102 NeuB family EQM13_03525 PF08666 SAF domain EQM13_03545 PF16363 GDP-mannose 4,6 dehydratase EQM13_03560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_03560 PF00874 PRD domain EQM13_03560 PF08279 HTH domain EQM13_03560 PF05043 Mga helix-turn-helix domain EQM13_03565 PF00596 Class II Aldolase and Adducin N-terminal domain EQM13_03570 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_03570 PF00107 Zinc-binding dehydrogenase EQM13_03580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_03580 PF00381 PTS HPr component phosphorylation site EQM13_03580 PF05524 PEP-utilising enzyme, N-terminal EQM13_03580 PF00391 PEP-utilising enzyme, mobile domain EQM13_03580 PF02896 PEP-utilising enzyme, TIM barrel domain EQM13_03585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_03590 PF03611 PTS system sugar-specific permease component EQM13_03605 PF01261 Xylose isomerase-like TIM barrel EQM13_03610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EQM13_03610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EQM13_03615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_03615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_03620 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_03620 PF00107 Zinc-binding dehydrogenase EQM13_03625 PF07478 D-ala D-ala ligase C-terminus EQM13_03625 PF01820 D-ala D-ala ligase N-terminus EQM13_03630 PF00232 Glycosyl hydrolase family 1 EQM13_03640 PF02378 Phosphotransferase system, EIIC EQM13_03645 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_03650 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) EQM13_03655 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EQM13_03660 PF00874 PRD domain EQM13_03660 PF03610 PTS system fructose IIA component EQM13_03660 PF00158 Sigma-54 interaction domain EQM13_03665 PF01979 Amidohydrolase family EQM13_03670 PF00390 Malic enzyme, N-terminal domain EQM13_03670 PF03949 Malic enzyme, NAD binding domain EQM13_03680 PF05681 Fumarate hydratase (Fumerase) EQM13_03680 PF05683 Fumarase C-terminus EQM13_03690 PF01381 Helix-turn-helix EQM13_03695 PF02915 Rubrerythrin EQM13_03705 PF00005 ABC transporter EQM13_03735 PF02465 Flagellar hook-associated protein 2 N-terminus EQM13_03735 PF07195 Flagellar hook-associated protein 2 C-terminus EQM13_03740 PF02561 Flagellar protein FliS EQM13_03750 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EQM13_03750 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus EQM13_03755 PF01043 SecA preprotein cross-linking domain EQM13_03755 PF07517 SecA DEAD-like domain EQM13_03755 PF02810 SEC-C motif EQM13_03755 PF07516 SecA Wing and Scaffold domain EQM13_03760 PF00472 RF-1 domain EQM13_03760 PF03462 PCRF domain EQM13_03765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EQM13_03765 PF00672 HAMP domain EQM13_03765 PF02743 Cache domain EQM13_03770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_03770 PF00512 His Kinase A (phospho-acceptor) domain EQM13_03770 PF00989 PAS fold EQM13_03770 PF08447 PAS fold EQM13_03775 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain EQM13_03775 PF01276 Orn/Lys/Arg decarboxylase, major domain EQM13_03780 PF12822 ECF transporter, substrate-specific component EQM13_03785 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EQM13_03790 PF00814 Glycoprotease family EQM13_03800 PF00005 ABC transporter EQM13_03800 PF16326 ABC transporter C-terminal domain EQM13_03800 PF12848 ABC transporter EQM13_03810 PF06971 Putative DNA-binding protein N-terminus EQM13_03810 PF02629 CoA binding domain EQM13_03815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EQM13_03815 PF02770 Acyl-CoA dehydrogenase, middle domain EQM13_03815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EQM13_03820 PF01012 Electron transfer flavoprotein domain EQM13_03825 PF00766 Electron transfer flavoprotein FAD-binding domain EQM13_03825 PF01012 Electron transfer flavoprotein domain EQM13_03835 PF04474 Protein of unknown function (DUF554) EQM13_03840 PF00166 Chaperonin 10 Kd subunit EQM13_03845 PF00118 TCP-1/cpn60 chaperonin family EQM13_03850 PF04198 Putative sugar-binding domain EQM13_03860 PF04542 Sigma-70 region 2 EQM13_03860 PF08281 Sigma-70, region 4 EQM13_03895 PF00478 IMP dehydrogenase / GMP reductase domain EQM13_03895 PF00571 CBS domain EQM13_03900 PF02540 NAD synthase EQM13_03900 PF00958 GMP synthase C terminal domain EQM13_03900 PF00117 Glutamine amidotransferase class-I EQM13_03915 PF17726 Dam-replacing HTH domain EQM13_03915 PF06044 Dam-replacing family EQM13_03920 PF01048 Phosphorylase superfamily EQM13_03925 PF00958 GMP synthase C terminal domain EQM13_03925 PF00117 Glutamine amidotransferase class-I EQM13_03925 PF03352 Methyladenine glycosylase EQM13_03925 PF13302 Acetyltransferase (GNAT) domain EQM13_03925 PF13673 Acetyltransferase (GNAT) domain EQM13_03935 PF03830 PTS system sorbose subfamily IIB component EQM13_03940 PF03609 PTS system sorbose-specific iic component EQM13_03945 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_03950 PF01842 ACT domain EQM13_03950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_03950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_03960 PF01628 HrcA protein C terminal domain EQM13_03960 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding EQM13_03965 PF01116 Fructose-bisphosphate aldolase class-II EQM13_03975 PF03610 PTS system fructose IIA component EQM13_03980 PF00571 CBS domain EQM13_03980 PF01380 SIS domain EQM13_03985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_03985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_03995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_03995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_04000 PF00701 Dihydrodipicolinate synthetase family EQM13_04005 PF01418 Helix-turn-helix domain, rpiR family EQM13_04005 PF01380 SIS domain EQM13_04010 PF13520 Amino acid permease EQM13_04015 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EQM13_04015 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EQM13_04020 PF00874 PRD domain EQM13_04020 PF08279 HTH domain EQM13_04020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_04020 PF05043 Mga helix-turn-helix domain EQM13_04030 PF01116 Fructose-bisphosphate aldolase class-II EQM13_04045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_04050 PF03611 PTS system sugar-specific permease component EQM13_04060 PF00596 Class II Aldolase and Adducin N-terminal domain EQM13_04065 PF00158 Sigma-54 interaction domain EQM13_04065 PF13426 PAS domain EQM13_04065 PF02954 Bacterial regulatory protein, Fis family EQM13_04075 PF01008 Initiation factor 2 subunit family EQM13_04080 PF12706 Beta-lactamase superfamily domain EQM13_04085 PF01371 Trp repressor protein EQM13_04090 PF00221 Aromatic amino acid lyase EQM13_04095 PF07837 Formiminotransferase domain, N-terminal subdomain EQM13_04095 PF02971 Formiminotransferase domain EQM13_04105 PF01175 Urocanase Rossmann-like domain EQM13_04105 PF17392 Urocanase C-terminal domain EQM13_04105 PF17391 Urocanase N-terminal domain EQM13_04110 PF01979 Amidohydrolase family EQM13_04120 PF13361 UvrD-like helicase C-terminal domain EQM13_04120 PF00580 UvrD/REP helicase N-terminal domain EQM13_04125 PF03120 NAD-dependent DNA ligase OB-fold domain EQM13_04125 PF00533 BRCA1 C Terminus (BRCT) domain EQM13_04125 PF12826 Helix-hairpin-helix motif EQM13_04125 PF01653 NAD-dependent DNA ligase adenylation domain EQM13_04135 PF02686 Glu-tRNAGln amidotransferase C subunit EQM13_04140 PF01425 Amidase EQM13_04145 PF02637 GatB domain EQM13_04145 PF02934 GatB/GatE catalytic domain EQM13_04150 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_04155 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_04155 PF12911 N-terminal TM domain of oligopeptide transport permease C EQM13_04160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_04160 PF00005 ABC transporter EQM13_04165 PF00005 ABC transporter EQM13_04165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_04170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_04175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_04185 PF00586 AIR synthase related protein, N-terminal domain EQM13_04185 PF02769 AIR synthase related protein, C-terminal domain EQM13_04190 PF01520 N-acetylmuramoyl-L-alanine amidase EQM13_04195 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQM13_04205 PF01138 3' exoribonuclease family, domain 1 EQM13_04205 PF03725 3' exoribonuclease family, domain 2 EQM13_04210 PF01725 Ham1 family EQM13_04245 PF01964 Radical SAM ThiC family EQM13_04250 PF02110 Hydroxyethylthiazole kinase family EQM13_04260 PF13667 ThiC-associated domain EQM13_04260 PF01964 Radical SAM ThiC family EQM13_04260 PF02581 Thiamine monophosphate synthase EQM13_04270 PF01047 MarR family EQM13_04290 PF00692 dUTPase EQM13_04305 PF01381 Helix-turn-helix EQM13_04315 PF02954 Bacterial regulatory protein, Fis family EQM13_04315 PF13426 PAS domain EQM13_04315 PF00158 Sigma-54 interaction domain EQM13_04320 PF13520 Amino acid permease EQM13_04325 PF00491 Arginase family EQM13_04330 PF07664 Ferrous iron transport protein B C terminus EQM13_04330 PF17910 FeoB cytosolic helical domain EQM13_04330 PF02421 Ferrous iron transport protein B EQM13_04330 PF07670 Nucleoside recognition EQM13_04340 PF01325 Iron dependent repressor, N-terminal DNA binding domain EQM13_04340 PF02742 Iron dependent repressor, metal binding and dimerisation domain EQM13_04345 PF01325 Iron dependent repressor, N-terminal DNA binding domain EQM13_04345 PF02742 Iron dependent repressor, metal binding and dimerisation domain EQM13_04360 PF00005 ABC transporter EQM13_04365 PF00392 Bacterial regulatory proteins, gntR family EQM13_04370 PF00005 ABC transporter EQM13_04380 PF16491 CAAX prenyl protease N-terminal, five membrane helices EQM13_04380 PF01435 Peptidase family M48 EQM13_04385 PF04539 Sigma-70 region 3 EQM13_04385 PF04545 Sigma-70, region 4 EQM13_04385 PF00140 Sigma-70 factor, region 1.2 EQM13_04385 PF04542 Sigma-70 region 2 EQM13_04390 PF01545 Cation efflux family EQM13_04390 PF16916 Dimerisation domain of Zinc Transporter EQM13_04395 PF00005 ABC transporter EQM13_04405 PF00719 Inorganic pyrophosphatase EQM13_04415 PF01554 MatE EQM13_04425 PF01554 MatE EQM13_04430 PF01979 Amidohydrolase family EQM13_04440 PF01496 V-type ATPase 116kDa subunit family EQM13_04445 PF00137 ATP synthase subunit C EQM13_04450 PF01991 ATP synthase (E/31 kDa) subunit EQM13_04460 PF01990 ATP synthase (F/14-kDa) subunit EQM13_04465 PF16886 ATPsynthase alpha/beta subunit N-term extension EQM13_04465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQM13_04465 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQM13_04470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQM13_04470 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQM13_04475 PF01813 ATP synthase subunit D EQM13_04480 PF01048 Phosphorylase superfamily EQM13_04485 PF03951 Glutamine synthetase, beta-Grasp domain EQM13_04485 PF00120 Glutamine synthetase, catalytic domain EQM13_04490 PF00588 SpoU rRNA Methylase family EQM13_04505 PF01256 Carbohydrate kinase EQM13_04505 PF03853 YjeF-related protein N-terminus EQM13_04515 PF00842 Alanine racemase, C-terminal domain EQM13_04515 PF01168 Alanine racemase, N-terminal domain EQM13_04525 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EQM13_04545 PF00534 Glycosyl transferases group 1 EQM13_04545 PF13439 Glycosyltransferase Family 4 EQM13_04570 PF03808 Glycosyl transferase WecB/TagA/CpsF family EQM13_04575 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQM13_04575 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EQM13_04580 PF00456 Transketolase, thiamine diphosphate binding domain EQM13_04585 PF02779 Transketolase, pyrimidine binding domain EQM13_04585 PF02780 Transketolase, C-terminal domain EQM13_04595 PF00877 NlpC/P60 family EQM13_04595 PF01476 LysM domain EQM13_04600 PF01812 5-formyltetrahydrofolate cyclo-ligase family EQM13_04605 PF00005 ABC transporter EQM13_04610 PF02687 FtsX-like permease family EQM13_04610 PF18075 FtsX extracellular domain EQM13_04615 PF01551 Peptidase family M23 EQM13_04620 PF17820 PDZ domain EQM13_04620 PF03572 Peptidase family S41 EQM13_04620 PF01471 Putative peptidoglycan binding domain EQM13_04635 PF02151 UvrB/uvrC motif EQM13_04635 PF17757 UvrB interaction domain EQM13_04635 PF04851 Type III restriction enzyme, res subunit EQM13_04635 PF00271 Helicase conserved C-terminal domain EQM13_04635 PF12344 Ultra-violet resistance protein B EQM13_04640 PF17755 UvrA DNA-binding domain EQM13_04640 PF17760 UvrA interaction domain EQM13_04660 PF08459 UvrC Helix-hairpin-helix N-terminal EQM13_04660 PF02151 UvrB/uvrC motif EQM13_04660 PF12826 Helix-hairpin-helix motif EQM13_04660 PF01541 GIY-YIG catalytic domain EQM13_04670 PF07475 HPr Serine kinase C-terminal domain EQM13_04670 PF02603 HPr Serine kinase N terminus EQM13_04675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EQM13_04675 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg EQM13_04675 PF10371 Domain of unknown function EQM13_04675 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II EQM13_04675 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase EQM13_04680 PF17676 LD-carboxypeptidase C-terminal domain EQM13_04680 PF02016 LD-carboxypeptidase N-terminal domain EQM13_04690 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EQM13_04690 PF01565 FAD binding domain EQM13_04695 PF02811 PHP domain EQM13_04700 PF03668 P-loop ATPase protein family EQM13_04705 PF01933 Uncharacterised protein family UPF0052 EQM13_04715 PF00293 NUDIX domain EQM13_04720 PF02650 WhiA C-terminal HTH domain EQM13_04720 PF14527 WhiA LAGLIDADG-like domain EQM13_04720 PF10298 WhiA N-terminal LAGLIDADG-like domain EQM13_04725 PF00381 PTS HPr component phosphorylation site EQM13_04730 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EQM13_04730 PF07733 Bacterial DNA polymerase III alpha NTPase domain EQM13_04730 PF01336 OB-fold nucleic acid binding domain EQM13_04730 PF02811 PHP domain EQM13_04730 PF14579 Helix-hairpin-helix motif EQM13_04740 PF00365 Phosphofructokinase EQM13_04745 PF00391 PEP-utilising enzyme, mobile domain EQM13_04745 PF02887 Pyruvate kinase, alpha/beta domain EQM13_04745 PF00224 Pyruvate kinase, barrel domain EQM13_04750 PF04186 FxsA cytoplasmic membrane protein EQM13_04755 PF05958 tRNA (Uracil-5-)-methyltransferase EQM13_04755 PF01938 TRAM domain EQM13_04825 PF13614 AAA domain EQM13_04830 PF17762 HTH domain found in ParB protein EQM13_04830 PF02195 ParB-like nuclease domain EQM13_04880 PF00877 NlpC/P60 family EQM13_04895 PF01131 DNA topoisomerase EQM13_04895 PF01751 Toprim domain EQM13_04915 PF04002 RadC-like JAB domain EQM13_04950 PF03432 Relaxase/Mobilisation nuclease domain EQM13_04975 PF01695 IstB-like ATP binding protein EQM13_04990 PF02001 Protein of unknown function DUF134 EQM13_04995 PF01592 NifU-like N terminal domain EQM13_05020 PF10609 NUBPL iron-transfer P-loop NTPase EQM13_05040 PF00440 Bacterial regulatory proteins, tetR family EQM13_05045 PF03176 MMPL family EQM13_05055 PF12838 4Fe-4S dicluster domain EQM13_05065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EQM13_05065 PF00672 HAMP domain EQM13_05065 PF02743 Cache domain EQM13_05085 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EQM13_05090 PF02796 Helix-turn-helix domain of resolvase EQM13_05090 PF00239 Resolvase, N terminal domain EQM13_05095 PF01381 Helix-turn-helix EQM13_05100 PF01520 N-acetylmuramoyl-L-alanine amidase EQM13_05100 PF11741 AMIN domain EQM13_05105 PF13302 Acetyltransferase (GNAT) domain EQM13_05110 PF02954 Bacterial regulatory protein, Fis family EQM13_05110 PF13188 PAS domain EQM13_05110 PF00158 Sigma-54 interaction domain EQM13_05115 PF02347 Glycine cleavage system P-protein EQM13_05120 PF02347 Glycine cleavage system P-protein EQM13_05135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_05135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_05135 PF01842 ACT domain EQM13_05140 PF00155 Aminotransferase class I and II EQM13_05145 PF03606 C4-dicarboxylate anaerobic carrier EQM13_05150 PF07969 Amidohydrolase family EQM13_05155 PF01757 Acyltransferase family EQM13_05160 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase EQM13_05165 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EQM13_05165 PF04055 Radical SAM superfamily EQM13_05175 PF01497 Periplasmic binding protein EQM13_05180 PF01032 FecCD transport family EQM13_05190 PF11965 Domain of unknown function (DUF3479) EQM13_05190 PF02514 CobN/Magnesium Chelatase EQM13_05195 PF01078 Magnesium chelatase, subunit ChlI EQM13_05195 PF17863 AAA lid domain EQM13_05200 PF17863 AAA lid domain EQM13_05200 PF07728 AAA domain (dynein-related subfamily) EQM13_05200 PF13519 von Willebrand factor type A domain EQM13_05240 PF01965 DJ-1/PfpI family EQM13_05255 PF04954 Siderophore-interacting protein EQM13_05255 PF08021 Siderophore-interacting FAD-binding domain EQM13_05255 PF00005 ABC transporter EQM13_05255 PF00664 ABC transporter transmembrane region EQM13_05260 PF00005 ABC transporter EQM13_05260 PF00664 ABC transporter transmembrane region EQM13_05275 PF00440 Bacterial regulatory proteins, tetR family EQM13_05280 PF04954 Siderophore-interacting protein EQM13_05280 PF08021 Siderophore-interacting FAD-binding domain EQM13_05280 PF00005 ABC transporter EQM13_05280 PF00664 ABC transporter transmembrane region EQM13_05285 PF00005 ABC transporter EQM13_05285 PF00664 ABC transporter transmembrane region EQM13_05305 PF01869 BadF/BadG/BcrA/BcrD ATPase family EQM13_05320 PF13732 Domain of unknown function (DUF4162) EQM13_05320 PF00005 ABC transporter EQM13_05340 PF01725 Ham1 family EQM13_05350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_05365 PF03611 PTS system sugar-specific permease component EQM13_05370 PF00596 Class II Aldolase and Adducin N-terminal domain EQM13_05375 PF00874 PRD domain EQM13_05375 PF00158 Sigma-54 interaction domain EQM13_05375 PF03610 PTS system fructose IIA component EQM13_05380 PF09335 SNARE associated Golgi protein EQM13_05390 PF00248 Aldo/keto reductase family EQM13_05400 PF02645 Uncharacterised protein, DegV family COG1307 EQM13_05405 PF00860 Permease family EQM13_05410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EQM13_05410 PF00056 lactate/malate dehydrogenase, NAD binding domain EQM13_05415 PF00958 GMP synthase C terminal domain EQM13_05415 PF13673 Acetyltransferase (GNAT) domain EQM13_05415 PF13302 Acetyltransferase (GNAT) domain EQM13_05415 PF03352 Methyladenine glycosylase EQM13_05415 PF00117 Glutamine amidotransferase class-I EQM13_05420 PF04463 Protein of unknown function (DUF523) EQM13_05425 PF02690 Na+/Pi-cotransporter EQM13_05430 PF02581 Thiamine monophosphate synthase EQM13_05430 PF08543 Phosphomethylpyrimidine kinase EQM13_05435 PF00005 ABC transporter EQM13_05435 PF16326 ABC transporter C-terminal domain EQM13_05435 PF12848 ABC transporter EQM13_05440 PF02583 Metal-sensitive transcriptional repressor EQM13_05445 PF00403 Heavy-metal-associated domain EQM13_05450 PF00860 Permease family EQM13_05455 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase EQM13_05465 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg EQM13_05465 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II EQM13_05470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EQM13_05475 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal EQM13_05475 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal EQM13_05480 PF02803 Thiolase, C-terminal domain EQM13_05480 PF00108 Thiolase, N-terminal domain EQM13_05485 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EQM13_05485 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EQM13_05490 PF00378 Enoyl-CoA hydratase/isomerase EQM13_05495 PF01842 ACT domain EQM13_05495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_05495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_05500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EQM13_05500 PF02770 Acyl-CoA dehydrogenase, middle domain EQM13_05500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EQM13_05505 PF01012 Electron transfer flavoprotein domain EQM13_05510 PF00766 Electron transfer flavoprotein FAD-binding domain EQM13_05510 PF01012 Electron transfer flavoprotein domain EQM13_05540 PF01614 Bacterial transcriptional regulator EQM13_05540 PF09339 IclR helix-turn-helix domain EQM13_05545 PF00682 HMGL-like EQM13_05550 PF00330 Aconitase family (aconitate hydratase) EQM13_05555 PF18324 Hypothetical protein TT1725 EQM13_05555 PF00180 Isocitrate/isopropylmalate dehydrogenase EQM13_05560 PF02436 Conserved carboxylase domain EQM13_05560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EQM13_05560 PF00364 Biotin-requiring enzyme EQM13_05560 PF00289 Biotin carboxylase, N-terminal domain EQM13_05560 PF02785 Biotin carboxylase C-terminal domain EQM13_05560 PF00682 HMGL-like EQM13_05565 PF00963 Cohesin domain EQM13_05565 PF00395 S-layer homology domain EQM13_05570 PF06280 Fn3-like domain EQM13_05570 PF02225 PA domain EQM13_05570 PF00746 LPXTG cell wall anchor motif EQM13_05570 PF00082 Subtilase family EQM13_05575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_05585 PF03611 PTS system sugar-specific permease component EQM13_05590 PF02126 Phosphotriesterase family EQM13_05600 PF01614 Bacterial transcriptional regulator EQM13_05600 PF09339 IclR helix-turn-helix domain EQM13_05620 PF01118 Semialdehyde dehydrogenase, NAD binding domain EQM13_05620 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation EQM13_05625 PF00682 HMGL-like EQM13_05625 PF07836 DmpG-like communication domain EQM13_05640 PF03594 Benzoate membrane transport protein EQM13_05645 PF01321 Creatinase/Prolidase N-terminal domain EQM13_05645 PF00557 Metallopeptidase family M24 EQM13_05675 PF00082 Subtilase family EQM13_05675 PF05922 Peptidase inhibitor I9 EQM13_05680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EQM13_05690 PF00271 Helicase conserved C-terminal domain EQM13_05690 PF12419 SNF2 Helicase protein EQM13_05690 PF00176 SNF2 family N-terminal domain EQM13_05700 PF00709 Adenylosuccinate synthetase EQM13_05710 PF00872 Transposase, Mutator family EQM13_05715 PF06782 Uncharacterised protein family (UPF0236) EQM13_05725 PF01555 DNA methylase EQM13_05760 PF00664 ABC transporter transmembrane region EQM13_05760 PF00005 ABC transporter EQM13_05765 PF00664 ABC transporter transmembrane region EQM13_05765 PF00005 ABC transporter EQM13_05770 PF06968 Biotin and Thiamin Synthesis associated domain EQM13_05770 PF04055 Radical SAM superfamily EQM13_05775 PF00156 Phosphoribosyl transferase domain EQM13_05780 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EQM13_05780 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQM13_05785 PF01180 Dihydroorotate dehydrogenase EQM13_05805 PF01470 Pyroglutamyl peptidase EQM13_05825 PF00768 D-alanyl-D-alanine carboxypeptidase EQM13_05825 PF07943 Penicillin-binding protein 5, C-terminal domain EQM13_05885 PF13649 Methyltransferase domain EQM13_05895 PF01330 RuvA N terminal domain EQM13_05895 PF07499 RuvA, C-terminal domain EQM13_05905 PF13509 S1 domain EQM13_05905 PF17783 CvfB-like winged helix domain EQM13_06015 PF00326 Prolyl oligopeptidase family EQM13_06015 PF07676 WD40-like Beta Propeller Repeat EQM13_06020 PF01081 KDPG and KHG aldolase EQM13_06025 PF03611 PTS system sugar-specific permease component EQM13_06030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_06040 PF00486 Transcriptional regulatory protein, C terminal EQM13_06040 PF00072 Response regulator receiver domain EQM13_06045 PF00672 HAMP domain EQM13_06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_06045 PF00512 His Kinase A (phospho-acceptor) domain EQM13_06045 PF13426 PAS domain EQM13_06050 PF00005 ABC transporter EQM13_06050 PF00664 ABC transporter transmembrane region EQM13_06055 PF00005 ABC transporter EQM13_06055 PF00664 ABC transporter transmembrane region EQM13_06060 PF13687 Domain of unknown function (DUF4153) EQM13_06065 PF03193 RsgA GTPase EQM13_06075 PF03471 Transporter associated domain EQM13_06075 PF00571 CBS domain EQM13_06075 PF01595 Cyclin M transmembrane N-terminal domain EQM13_06095 PF13181 Tetratricopeptide repeat EQM13_06095 PF00535 Glycosyl transferase family 2 EQM13_06100 PF01297 Zinc-uptake complex component A periplasmic EQM13_06105 PF00005 ABC transporter EQM13_06110 PF00950 ABC 3 transport family EQM13_06115 PF00950 ABC 3 transport family EQM13_06135 PF01625 Peptide methionine sulfoxide reductase EQM13_06140 PF13185 GAF domain EQM13_06145 PF02631 RecX family EQM13_06155 PF01555 DNA methylase EQM13_06160 PF01546 Peptidase family M20/M25/M40 EQM13_06160 PF07687 Peptidase dimerisation domain EQM13_06170 PF02127 Aminopeptidase I zinc metalloprotease (M18) EQM13_06180 PF04055 Radical SAM superfamily EQM13_06180 PF16199 Radical_SAM C-terminal domain EQM13_06205 PF00849 RNA pseudouridylate synthase EQM13_06215 PF00571 CBS domain EQM13_06220 PF02743 Cache domain EQM13_06220 PF00672 HAMP domain EQM13_06220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EQM13_06225 PF01061 ABC-2 type transporter EQM13_06230 PF13732 Domain of unknown function (DUF4162) EQM13_06230 PF00005 ABC transporter EQM13_06250 PF04960 Glutaminase EQM13_06255 PF13426 PAS domain EQM13_06255 PF02954 Bacterial regulatory protein, Fis family EQM13_06255 PF00158 Sigma-54 interaction domain EQM13_06260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_06265 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_06270 PF12911 N-terminal TM domain of oligopeptide transport permease C EQM13_06270 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_06275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_06275 PF00005 ABC transporter EQM13_06280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_06280 PF00005 ABC transporter EQM13_06285 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain EQM13_06285 PF00877 NlpC/P60 family EQM13_06290 PF02659 Putative manganese efflux pump EQM13_06295 PF01915 Glycosyl hydrolase family 3 C-terminal domain EQM13_06295 PF00933 Glycosyl hydrolase family 3 N terminal domain EQM13_06305 PF12705 PD-(D/E)XK nuclease superfamily EQM13_06305 PF00580 UvrD/REP helicase N-terminal domain EQM13_06305 PF13361 UvrD-like helicase C-terminal domain EQM13_06325 PF01523 Putative modulator of DNA gyrase EQM13_06330 PF00664 ABC transporter transmembrane region EQM13_06330 PF00005 ABC transporter EQM13_06340 PF00005 ABC transporter EQM13_06345 PF01458 Uncharacterized protein family (UPF0051) EQM13_06350 PF01458 Uncharacterized protein family (UPF0051) EQM13_06355 PF00266 Aminotransferase class-V EQM13_06360 PF01592 NifU-like N terminal domain EQM13_06370 PF01820 D-ala D-ala ligase N-terminus EQM13_06370 PF07478 D-ala D-ala ligase C-terminus EQM13_06375 PF04294 VanW like protein EQM13_06385 PF00664 ABC transporter transmembrane region EQM13_06385 PF00005 ABC transporter EQM13_06415 PF00664 ABC transporter transmembrane region EQM13_06415 PF00005 ABC transporter EQM13_06440 PF00005 ABC transporter EQM13_06440 PF17912 MalK OB fold domain EQM13_06440 PF03459 TOBE domain EQM13_06445 PF00080 Copper/zinc superoxide dismutase (SODC) EQM13_06455 PF04308 Ribonuclease H-like EQM13_06470 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQM13_06475 PF00149 Calcineurin-like phosphoesterase EQM13_06500 PF00258 Flavodoxin EQM13_06515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EQM13_06515 PF00672 HAMP domain EQM13_06515 PF02743 Cache domain EQM13_06520 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EQM13_06520 PF00391 PEP-utilising enzyme, mobile domain EQM13_06520 PF02896 PEP-utilising enzyme, TIM barrel domain EQM13_06540 PF03180 NLPA lipoprotein EQM13_06545 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_06550 PF00005 ABC transporter EQM13_06550 PF09383 NIL domain EQM13_06565 PF13419 Haloacid dehalogenase-like hydrolase EQM13_06575 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EQM13_06575 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EQM13_06580 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain EQM13_06580 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain EQM13_06585 PF01979 Amidohydrolase family EQM13_06590 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EQM13_06595 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B EQM13_06600 PF01180 Dihydroorotate dehydrogenase EQM13_06605 PF00156 Phosphoribosyl transferase domain EQM13_06610 PF00209 Sodium:neurotransmitter symporter family EQM13_06615 PF03323 Bacillus/Clostridium GerA spore germination protein EQM13_06630 PF00313 'Cold-shock' DNA-binding domain EQM13_06635 PF01541 GIY-YIG catalytic domain EQM13_06640 PF00579 tRNA synthetases class I (W and Y) EQM13_06645 PF01081 KDPG and KHG aldolase EQM13_06660 PF01380 SIS domain EQM13_06660 PF01418 Helix-turn-helix domain, rpiR family EQM13_06665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_06665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_06670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EQM13_06670 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EQM13_06680 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_06685 PF03830 PTS system sorbose subfamily IIB component EQM13_06685 PF03610 PTS system fructose IIA component EQM13_06690 PF03830 PTS system sorbose subfamily IIB component EQM13_06700 PF01066 CDP-alcohol phosphatidyltransferase EQM13_06705 PF00158 Sigma-54 interaction domain EQM13_06705 PF00874 PRD domain EQM13_06705 PF03610 PTS system fructose IIA component EQM13_06710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_06715 PF03611 PTS system sugar-specific permease component EQM13_06720 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_06720 PF00107 Zinc-binding dehydrogenase EQM13_06725 PF00596 Class II Aldolase and Adducin N-terminal domain EQM13_06730 PF00465 Iron-containing alcohol dehydrogenase EQM13_06735 PF00107 Zinc-binding dehydrogenase EQM13_06735 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_06745 PF00133 tRNA synthetases class I (I, L, M and V) EQM13_06745 PF10458 Valyl tRNA synthetase tRNA binding arm EQM13_06745 PF08264 Anticodon-binding domain of tRNA EQM13_06755 PF08245 Mur ligase middle domain EQM13_06755 PF02875 Mur ligase family, glutamate ligase domain EQM13_06775 PF01522 Polysaccharide deacetylase EQM13_06780 PF02875 Mur ligase family, glutamate ligase domain EQM13_06780 PF01225 Mur ligase family, catalytic domain EQM13_06780 PF08245 Mur ligase middle domain EQM13_06790 PF00156 Phosphoribosyl transferase domain EQM13_06795 PF14602 Hexapeptide repeat of succinyl-transferase EQM13_06795 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal EQM13_06795 PF00132 Bacterial transferase hexapeptide (six repeats) EQM13_06800 PF05173 Dihydrodipicolinate reductase, C-terminus EQM13_06800 PF01113 Dihydrodipicolinate reductase, N-terminus EQM13_06805 PF00701 Dihydrodipicolinate synthetase family EQM13_06810 PF01118 Semialdehyde dehydrogenase, NAD binding domain EQM13_06810 PF02774 Semialdehyde dehydrogenase, dimerisation domain EQM13_06825 PF02146 Sir2 family EQM13_06830 PF13649 Methyltransferase domain EQM13_06835 PF00313 'Cold-shock' DNA-binding domain EQM13_06840 PF01430 Hsp33 protein EQM13_06870 PF00486 Transcriptional regulatory protein, C terminal EQM13_06870 PF00072 Response regulator receiver domain EQM13_06875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_06875 PF00512 His Kinase A (phospho-acceptor) domain EQM13_06880 PF00005 ABC transporter EQM13_06895 PF04101 Glycosyltransferase family 28 C-terminal domain EQM13_06895 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase EQM13_06900 PF13419 Haloacid dehalogenase-like hydrolase EQM13_06915 PF03129 Anticodon binding domain EQM13_06915 PF13393 Histidyl-tRNA synthetase EQM13_06920 PF00664 ABC transporter transmembrane region EQM13_06920 PF00005 ABC transporter EQM13_06925 PF03129 Anticodon binding domain EQM13_06925 PF02824 TGS domain EQM13_06925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EQM13_06925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EQM13_06930 PF01434 Peptidase family M41 EQM13_06930 PF17862 AAA+ lid domain EQM13_06930 PF00004 ATPase family associated with various cellular activities (AAA) EQM13_06935 PF05198 Translation initiation factor IF-3, N-terminal domain EQM13_06935 PF00707 Translation initiation factor IF-3, C-terminal domain EQM13_06940 PF01632 Ribosomal protein L35 EQM13_06945 PF00453 Ribosomal protein L20 EQM13_06950 PF00588 SpoU rRNA Methylase family EQM13_06950 PF08032 RNA 2'-O ribose methyltransferase substrate binding EQM13_06955 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EQM13_06955 PF01409 tRNA synthetases class II core domain (F) EQM13_06960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EQM13_06960 PF03147 Ferredoxin-fold anticodon binding domain EQM13_06960 PF03484 tRNA synthetase B5 domain EQM13_06960 PF01588 Putative tRNA binding domain EQM13_06960 PF03483 B3/4 domain EQM13_06970 PF01136 Peptidase family U32 EQM13_06970 PF16325 Peptidase family U32 C-terminal domain EQM13_06975 PF00488 MutS domain V EQM13_06975 PF01713 Smr domain EQM13_06980 PF00750 tRNA synthetases class I (R) EQM13_06980 PF05746 DALR anticodon binding domain EQM13_06980 PF03485 Arginyl tRNA synthetase N terminal domain EQM13_06990 PF04055 Radical SAM superfamily EQM13_06990 PF02310 B12 binding domain EQM13_07005 PF01515 Phosphate acetyl/butaryl transferase EQM13_07105 PF17746 SfsA N-terminal OB domain EQM13_07105 PF03749 Sugar fermentation stimulation protein RE domain EQM13_07110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EQM13_07110 PF00672 HAMP domain EQM13_07110 PF02743 Cache domain EQM13_07115 PF03062 MBOAT, membrane-bound O-acyltransferase family EQM13_07125 PF00072 Response regulator receiver domain EQM13_07125 PF04397 LytTr DNA-binding domain EQM13_07130 PF13186 Iron-sulfur cluster-binding domain EQM13_07130 PF04055 Radical SAM superfamily EQM13_07145 PF00005 ABC transporter EQM13_07150 PF04055 Radical SAM superfamily EQM13_07150 PF13186 Iron-sulfur cluster-binding domain EQM13_07160 PF00664 ABC transporter transmembrane region EQM13_07160 PF00005 ABC transporter EQM13_07165 PF03551 Transcriptional regulator PadR-like family EQM13_07170 PF01098 Cell cycle protein EQM13_07175 PF01661 Macro domain EQM13_07190 PF13567 Domain of unknown function (DUF4131) EQM13_07190 PF00753 Metallo-beta-lactamase superfamily EQM13_07190 PF03772 Competence protein EQM13_07200 PF03590 Aspartate-ammonia ligase EQM13_07230 PF02075 Crossover junction endodeoxyribonuclease RuvC EQM13_07235 PF01330 RuvA N terminal domain EQM13_07235 PF07499 RuvA, C-terminal domain EQM13_07240 PF05496 Holliday junction DNA helicase RuvB P-loop domain EQM13_07240 PF05491 RuvB C-terminal winged helix domain EQM13_07240 PF17864 RuvB AAA lid domain EQM13_07245 PF11146 Protein of unknown function (DUF2905) EQM13_07250 PF04122 Putative cell wall binding repeat 2 EQM13_07250 PF08486 Stage II sporulation protein EQM13_07255 PF02547 Queuosine biosynthesis protein EQM13_07260 PF01702 Queuine tRNA-ribosyltransferase EQM13_07265 PF02699 Preprotein translocase subunit EQM13_07290 PF04397 LytTr DNA-binding domain EQM13_07290 PF00072 Response regulator receiver domain EQM13_07310 PF00005 ABC transporter EQM13_07310 PF02687 FtsX-like permease family EQM13_07310 PF12704 MacB-like periplasmic core domain EQM13_07375 PF01368 DHH family EQM13_07375 PF02272 DHHA1 domain EQM13_07375 PF17768 RecJ OB domain EQM13_07375 PF10141 Single-strand DNA-specific exonuclease, C terminal domain EQM13_07380 PF13291 ACT domain EQM13_07380 PF02824 TGS domain EQM13_07380 PF04607 Region found in RelA / SpoT proteins EQM13_07385 PF02580 D-Tyr-tRNA(Tyr) deacylase EQM13_07390 PF00753 Metallo-beta-lactamase superfamily EQM13_07395 PF04055 Radical SAM superfamily EQM13_07400 PF00583 Acetyltransferase (GNAT) family EQM13_07410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_07410 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_07410 PF00874 PRD domain EQM13_07410 PF05043 Mga helix-turn-helix domain EQM13_07410 PF08279 HTH domain EQM13_07415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_07425 PF02378 Phosphotransferase system, EIIC EQM13_07430 PF01546 Peptidase family M20/M25/M40 EQM13_07435 PF01112 Asparaginase EQM13_07440 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EQM13_07445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EQM13_07445 PF02770 Acyl-CoA dehydrogenase, middle domain EQM13_07445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EQM13_07465 PF00005 ABC transporter EQM13_07480 PF00072 Response regulator receiver domain EQM13_07480 PF00486 Transcriptional regulatory protein, C terminal EQM13_07485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_07485 PF00512 His Kinase A (phospho-acceptor) domain EQM13_07505 PF01695 IstB-like ATP binding protein EQM13_07510 PF13302 Acetyltransferase (GNAT) domain EQM13_07575 PF00664 ABC transporter transmembrane region EQM13_07575 PF00005 ABC transporter EQM13_07580 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_07585 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_07595 PF00005 ABC transporter EQM13_07595 PF17912 MalK OB fold domain EQM13_07595 PF03459 TOBE domain EQM13_07600 PF03932 CutC family EQM13_07620 PF03575 Peptidase family S51 EQM13_07625 PF00293 NUDIX domain EQM13_07625 PF13344 Haloacid dehalogenase-like hydrolase EQM13_07695 PF00300 Histidine phosphatase superfamily (branch 1) EQM13_07715 PF01648 4'-phosphopantetheinyl transferase superfamily EQM13_07720 PF13193 AMP-binding enzyme C-terminal domain EQM13_07720 PF00668 Condensation domain EQM13_07720 PF00550 Phosphopantetheine attachment site EQM13_07720 PF00501 AMP-binding enzyme EQM13_07735 PF00664 ABC transporter transmembrane region EQM13_07735 PF00005 ABC transporter EQM13_07775 PF02423 Ornithine cyclodeaminase/mu-crystallin family EQM13_07780 PF00155 Aminotransferase class I and II EQM13_07785 PF03606 C4-dicarboxylate anaerobic carrier EQM13_07790 PF00158 Sigma-54 interaction domain EQM13_07790 PF13426 PAS domain EQM13_07790 PF02954 Bacterial regulatory protein, Fis family EQM13_07795 PF01894 Uncharacterised protein family UPF0047 EQM13_07825 PF00501 AMP-binding enzyme EQM13_07825 PF00550 Phosphopantetheine attachment site EQM13_07825 PF00668 Condensation domain EQM13_07825 PF13193 AMP-binding enzyme C-terminal domain EQM13_07830 PF00668 Condensation domain EQM13_07830 PF00501 AMP-binding enzyme EQM13_07830 PF13193 AMP-binding enzyme C-terminal domain EQM13_07830 PF00550 Phosphopantetheine attachment site EQM13_07830 PF00975 Thioesterase domain EQM13_07840 PF13649 Methyltransferase domain EQM13_07845 PF13936 Helix-turn-helix domain EQM13_07845 PF04198 Putative sugar-binding domain EQM13_07850 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_07855 PF00248 Aldo/keto reductase family EQM13_07860 PF03611 PTS system sugar-specific permease component EQM13_07865 PF01791 DeoC/LacD family aldolase EQM13_07875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_07880 PF06827 Zinc finger found in FPG and IleRS EQM13_07880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EQM13_07880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EQM13_07890 PF00874 PRD domain EQM13_07890 PF03610 PTS system fructose IIA component EQM13_07890 PF00158 Sigma-54 interaction domain EQM13_07900 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_07905 PF03611 PTS system sugar-specific permease component EQM13_07910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_07910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_07915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EQM13_07915 PF13378 Enolase C-terminal domain-like EQM13_07920 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component EQM13_07930 PF01869 BadF/BadG/BcrA/BcrD ATPase family EQM13_07935 PF02645 Uncharacterised protein, DegV family COG1307 EQM13_07940 PF02938 GAD domain EQM13_07940 PF01336 OB-fold nucleic acid binding domain EQM13_07940 PF00152 tRNA synthetases class II (D, K and N) EQM13_07960 PF00464 Serine hydroxymethyltransferase EQM13_07965 PF14045 YIEGIA protein EQM13_07980 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EQM13_07980 PF01926 50S ribosome-binding GTPase EQM13_07985 PF02660 Glycerol-3-phosphate acyltransferase EQM13_07990 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EQM13_07990 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EQM13_07995 PF09547 Stage IV sporulation protein A (spore_IV_A) EQM13_08005 PF00149 Calcineurin-like phosphoesterase EQM13_08010 PF00005 ABC transporter EQM13_08015 PF01047 MarR family EQM13_08040 PF01934 Protein of unknown function DUF86 EQM13_08055 PF01168 Alanine racemase, N-terminal domain EQM13_08060 PF04472 Cell division protein SepF EQM13_08070 PF01479 S4 domain EQM13_08070 PF17774 Putative RNA-binding domain in YlmH EQM13_08075 PF05103 DivIVA protein EQM13_08085 PF01258 Prokaryotic dksA/traR C4-type zinc finger EQM13_08090 PF01252 Signal peptidase (SPase) II EQM13_08095 PF01479 S4 domain EQM13_08095 PF00849 RNA pseudouridylate synthase EQM13_08100 PF00156 Phosphoribosyl transferase domain EQM13_08105 PF05670 NFACT protein RNA binding domain EQM13_08110 PF08340 Domain of unknown function (DUF1732) EQM13_08110 PF03755 YicC-like family, N-terminal region EQM13_08115 PF04025 Domain of unknown function (DUF370) EQM13_08120 PF00625 Guanylate kinase EQM13_08125 PF01192 RNA polymerase Rpb6 EQM13_08130 PF04127 DNA / pantothenate metabolism flavoprotein EQM13_08130 PF02441 Flavoprotein EQM13_08135 PF17764 3′ DNA-binding domain (3′BD) EQM13_08135 PF00271 Helicase conserved C-terminal domain EQM13_08135 PF18074 Primosomal protein N C-terminal domain EQM13_08135 PF04851 Type III restriction enzyme, res subunit EQM13_08135 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EQM13_08140 PF01327 Polypeptide deformylase EQM13_08145 PF02911 Formyl transferase, C-terminal domain EQM13_08145 PF00551 Formyl transferase EQM13_08150 PF04298 Putative neutral zinc metallopeptidase EQM13_08155 PF01189 16S rRNA methyltransferase RsmB/F EQM13_08155 PF01029 NusB family EQM13_08160 PF04055 Radical SAM superfamily EQM13_08170 PF03793 PASTA domain EQM13_08170 PF00069 Protein kinase domain EQM13_08175 PF03193 RsgA GTPase EQM13_08175 PF16745 RsgA N-terminal domain EQM13_08180 PF00834 Ribulose-phosphate 3 epimerase family EQM13_08200 PF00830 Ribosomal L28 family EQM13_08205 PF03780 Asp23 family, cell envelope-related function EQM13_08210 PF13684 Dihydroxyacetone kinase family EQM13_08210 PF02734 DAK2 domain EQM13_08215 PF00271 Helicase conserved C-terminal domain EQM13_08215 PF17191 RecG wedge domain EQM13_08215 PF00270 DEAD/DEAH box helicase EQM13_08225 PF01467 Cytidylyltransferase-like EQM13_08235 PF07670 Nucleoside recognition EQM13_08240 PF01734 Patatin-like phospholipase EQM13_08245 PF05636 HIGH Nucleotidyl Transferase EQM13_08250 PF00871 Acetokinase family EQM13_08260 PF01783 Ribosomal L32p protein family EQM13_08265 PF02504 Fatty acid synthesis protein EQM13_08270 PF00550 Phosphopantetheine attachment site EQM13_08275 PF00035 Double-stranded RNA binding motif EQM13_08275 PF14622 Ribonuclease-III-like EQM13_08285 PF06470 SMC proteins Flexible Hinge Domain EQM13_08285 PF02463 RecF/RecN/SMC N terminal domain EQM13_08290 PF00448 SRP54-type protein, GTPase domain EQM13_08290 PF02881 SRP54-type protein, helical bundle domain EQM13_08300 PF04297 Putative helix-turn-helix protein, YlxM / p13 like EQM13_08305 PF00448 SRP54-type protein, GTPase domain EQM13_08305 PF02881 SRP54-type protein, helical bundle domain EQM13_08305 PF02978 Signal peptide binding domain EQM13_08310 PF00886 Ribosomal protein S16 EQM13_08320 PF05239 PRC-barrel domain EQM13_08320 PF01782 RimM N-terminal domain EQM13_08325 PF01746 tRNA (Guanine-1)-methyltransferase EQM13_08330 PF00664 ABC transporter transmembrane region EQM13_08330 PF00005 ABC transporter EQM13_08335 PF01245 Ribosomal protein L19 EQM13_08340 PF01926 50S ribosome-binding GTPase EQM13_08345 PF01351 Ribonuclease HII EQM13_08355 PF01312 FlhB HrpN YscU SpaS Family EQM13_08360 PF02021 Uncharacterised protein family UPF0102 EQM13_08365 PF13335 Magnesium chelatase, subunit ChlI C-terminal EQM13_08365 PF01078 Magnesium chelatase, subunit ChlI EQM13_08370 PF02481 DNA recombination-mediator protein A EQM13_08370 PF17782 DprA winged helix domain EQM13_08375 PF01131 DNA topoisomerase EQM13_08375 PF01751 Toprim domain EQM13_08375 PF01396 Topoisomerase DNA binding C4 zinc finger EQM13_08380 PF00227 Proteasome subunit EQM13_08385 PF10431 C-terminal, D2-small domain, of ClpB protein EQM13_08385 PF00004 ATPase family associated with various cellular activities (AAA) EQM13_08385 PF07724 AAA domain (Cdc48 subfamily) EQM13_08390 PF06018 CodY GAF-like domain EQM13_08390 PF08222 CodY helix-turn-helix domain EQM13_08395 PF00460 Flagella basal body rod protein EQM13_08400 PF00460 Flagella basal body rod protein EQM13_08400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EQM13_08405 PF02049 Flagellar hook-basal body complex protein FliE EQM13_08410 PF01514 Secretory protein of YscJ/FliF family EQM13_08410 PF08345 Flagellar M-ring protein C-terminal EQM13_08415 PF01706 FliG C-terminal domain EQM13_08415 PF14841 FliG middle domain EQM13_08415 PF14842 FliG N-terminal domain EQM13_08425 PF02874 ATP synthase alpha/beta family, beta-barrel domain EQM13_08425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EQM13_08425 PF18269 T3SS EscN ATPase C-terminal domain EQM13_08445 PF03963 Flagellar hook capping protein - N-terminal region EQM13_08455 PF07559 Flagellar basal body protein FlaE EQM13_08455 PF00460 Flagella basal body rod protein EQM13_08455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EQM13_08465 PF01618 MotA/TolQ/ExbB proton channel family EQM13_08470 PF13677 Membrane MotB of proton-channel complex MotA/MotB EQM13_08470 PF00691 OmpA family EQM13_08480 PF02154 Flagellar motor switch protein FliM EQM13_08480 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EQM13_08485 PF04509 CheC-like family EQM13_08485 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EQM13_08490 PF00072 Response regulator receiver domain EQM13_08500 PF00813 FliP family EQM13_08505 PF01313 Bacterial export proteins, family 3 EQM13_08510 PF01311 Bacterial export proteins, family 1 EQM13_08515 PF01312 FlhB HrpN YscU SpaS Family EQM13_08520 PF00771 FHIPEP family EQM13_08525 PF00448 SRP54-type protein, GTPase domain EQM13_08530 PF10609 NUBPL iron-transfer P-loop NTPase EQM13_08540 PF01339 CheB methylesterase EQM13_08540 PF00072 Response regulator receiver domain EQM13_08545 PF01584 CheW-like domain EQM13_08545 PF02895 Signal transducing histidine kinase, homodimeric domain EQM13_08545 PF01627 Hpt domain EQM13_08545 PF07194 P2 response regulator binding domain EQM13_08545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_08550 PF01584 CheW-like domain EQM13_08555 PF04509 CheC-like family EQM13_08560 PF03975 CheD chemotactic sensory transduction EQM13_08565 PF04539 Sigma-70 region 3 EQM13_08565 PF04542 Sigma-70 region 2 EQM13_08565 PF04545 Sigma-70, region 4 EQM13_08590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EQM13_08590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EQM13_08590 PF02770 Acyl-CoA dehydrogenase, middle domain EQM13_08595 PF00258 Flavodoxin EQM13_08595 PF00753 Metallo-beta-lactamase superfamily EQM13_08595 PF00301 Rubredoxin EQM13_08600 PF01820 D-ala D-ala ligase N-terminus EQM13_08600 PF07478 D-ala D-ala ligase C-terminus EQM13_08605 PF00318 Ribosomal protein S2 EQM13_08610 PF00889 Elongation factor TS EQM13_08615 PF00696 Amino acid kinase family EQM13_08620 PF01765 Ribosome recycling factor EQM13_08625 PF01255 Putative undecaprenyl diphosphate synthase EQM13_08635 PF17820 PDZ domain EQM13_08635 PF02163 Peptidase family M50 EQM13_08640 PF04551 GcpE protein EQM13_08645 PF01336 OB-fold nucleic acid binding domain EQM13_08645 PF02811 PHP domain EQM13_08645 PF11490 DNA polymerase III polC-type N-terminus II EQM13_08645 PF00929 Exonuclease EQM13_08645 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EQM13_08645 PF07733 Bacterial DNA polymerase III alpha NTPase domain EQM13_08645 PF14579 Helix-hairpin-helix motif EQM13_08650 PF02576 RimP N-terminal domain EQM13_08650 PF17384 RimP C-terminal SH3 domain EQM13_08655 PF08529 NusA N-terminal domain EQM13_08655 PF13184 NusA-like KH domain EQM13_08655 PF00575 S1 RNA binding domain EQM13_08665 PF04760 Translation initiation factor IF-2, N-terminal region EQM13_08665 PF00009 Elongation factor Tu GTP binding domain EQM13_08665 PF11987 Translation-initiation factor 2 EQM13_08670 PF02033 Ribosome-binding factor A EQM13_08675 PF01368 DHH family EQM13_08675 PF02272 DHHA1 domain EQM13_08680 PF16198 tRNA pseudouridylate synthase B C-terminal domain EQM13_08680 PF01509 TruB family pseudouridylate synthase (N terminal domain) EQM13_08685 PF06574 FAD synthetase EQM13_08685 PF01687 Riboflavin kinase EQM13_08690 PF00312 Ribosomal protein S15 EQM13_08695 PF03725 3' exoribonuclease family, domain 2 EQM13_08695 PF00575 S1 RNA binding domain EQM13_08695 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EQM13_08695 PF00013 KH domain EQM13_08695 PF01138 3' exoribonuclease family, domain 1 EQM13_08700 PF01522 Polysaccharide deacetylase EQM13_08705 PF00675 Insulinase (Peptidase family M16) EQM13_08705 PF05193 Peptidase M16 inactive domain EQM13_08710 PF00692 dUTPase EQM13_08720 PF00696 Amino acid kinase family EQM13_08720 PF13840 ACT domain EQM13_08725 PF00574 Clp protease EQM13_08730 PF17854 FtsK alpha domain EQM13_08730 PF09397 Ftsk gamma domain EQM13_08730 PF01580 FtsK/SpoIIIE family EQM13_08735 PF04055 Radical SAM superfamily EQM13_08735 PF18693 TRAM domain EQM13_08735 PF00919 Uncharacterized protein family UPF0004 EQM13_08740 PF01066 CDP-alcohol phosphatidyltransferase EQM13_08745 PF02464 Competence-damaged protein EQM13_08745 PF18146 Damage-inducible protein CinA KH domain EQM13_08745 PF00994 Probable molybdopterin binding domain EQM13_08750 PF00154 recA bacterial DNA recombination protein EQM13_08760 PF02463 RecF/RecN/SMC N terminal domain EQM13_08775 PF00013 KH domain EQM13_08775 PF12072 Domain of unknown function (DUF3552) EQM13_08775 PF01966 HD domain EQM13_08780 PF04232 Stage V sporulation protein S (SpoVS) EQM13_08785 PF02811 PHP domain EQM13_08795 PF00155 Aminotransferase class I and II EQM13_08800 PF00465 Iron-containing alcohol dehydrogenase EQM13_08805 PF00005 ABC transporter EQM13_08820 PF04542 Sigma-70 region 2 EQM13_08820 PF08281 Sigma-70, region 4 EQM13_08830 PF00005 ABC transporter EQM13_08865 PF00005 ABC transporter EQM13_08870 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_08875 PF00497 Bacterial extracellular solute-binding proteins, family 3 EQM13_08880 PF01641 SelR domain EQM13_08885 PF09339 IclR helix-turn-helix domain EQM13_08885 PF01614 Bacterial transcriptional regulator EQM13_08890 PF13673 Acetyltransferase (GNAT) domain EQM13_08905 PF02899 Phage integrase, N-terminal SAM-like domain EQM13_08905 PF00589 Phage integrase family EQM13_08910 PF01726 LexA DNA binding domain EQM13_08910 PF00717 Peptidase S24-like EQM13_08915 PF00834 Ribulose-phosphate 3 epimerase family EQM13_08920 PF00923 Transaldolase/Fructose-6-phosphate aldolase EQM13_08925 PF08220 DeoR-like helix-turn-helix domain EQM13_08925 PF00455 DeoR C terminal sensor domain EQM13_08930 PF06838 Methionine gamma-lyase EQM13_08935 PF17209 Hfq protein EQM13_08945 PF01119 DNA mismatch repair protein, C-terminal domain EQM13_08945 PF08676 MutL C terminal dimerisation domain EQM13_08950 PF00488 MutS domain V EQM13_08950 PF05190 MutS family domain IV EQM13_08950 PF05192 MutS domain III EQM13_08950 PF01624 MutS domain I EQM13_08950 PF05188 MutS domain II EQM13_08955 PF04055 Radical SAM superfamily EQM13_08955 PF01938 TRAM domain EQM13_08955 PF00919 Uncharacterized protein family UPF0004 EQM13_08965 PF00155 Aminotransferase class I and II EQM13_08975 PF05343 M42 glutamyl aminopeptidase EQM13_08980 PF05343 M42 glutamyl aminopeptidase EQM13_08985 PF05343 M42 glutamyl aminopeptidase EQM13_08990 PF01739 CheR methyltransferase, SAM binding domain EQM13_08990 PF03705 CheR methyltransferase, all-alpha domain EQM13_08995 PF02401 LytB protein EQM13_08995 PF00575 S1 RNA binding domain EQM13_09000 PF01553 Acyltransferase EQM13_09005 PF02224 Cytidylate kinase EQM13_09010 PF07736 Chorismate mutase type I EQM13_09025 PF00300 Histidine phosphatase superfamily (branch 1) EQM13_09030 PF01380 SIS domain EQM13_09030 PF01418 Helix-turn-helix domain, rpiR family EQM13_09040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EQM13_09045 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg EQM13_09045 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II EQM13_09045 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase EQM13_09055 PF00682 HMGL-like EQM13_09055 PF02436 Conserved carboxylase domain EQM13_09055 PF00364 Biotin-requiring enzyme EQM13_09060 PF06962 Putative rRNA methylase EQM13_09070 PF00849 RNA pseudouridylate synthase EQM13_09070 PF01479 S4 domain EQM13_09080 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B EQM13_09085 PF00768 D-alanyl-D-alanine carboxypeptidase EQM13_09085 PF07943 Penicillin-binding protein 5, C-terminal domain EQM13_09090 PF09579 Sporulation protein YtfJ (Spore_YtfJ) EQM13_09100 PF04079 Segregation and condensation complex subunit ScpB EQM13_09105 PF02616 Segregation and condensation protein ScpA EQM13_09110 PF02163 Peptidase family M50 EQM13_09115 PF07943 Penicillin-binding protein 5, C-terminal domain EQM13_09115 PF00768 D-alanyl-D-alanine carboxypeptidase EQM13_09120 PF00591 Glycosyl transferase family, a/b domain EQM13_09120 PF02885 Glycosyl transferase family, helical bundle domain EQM13_09120 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain EQM13_09125 PF01048 Phosphorylase superfamily EQM13_09130 PF00589 Phage integrase family EQM13_09130 PF02899 Phage integrase, N-terminal SAM-like domain EQM13_09140 PF00293 NUDIX domain EQM13_09155 PF00535 Glycosyl transferase family 2 EQM13_09170 PF00072 Response regulator receiver domain EQM13_09170 PF08769 Sporulation initiation factor Spo0A C terminal EQM13_09195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_09195 PF00005 ABC transporter EQM13_09200 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_09200 PF12911 N-terminal TM domain of oligopeptide transport permease C EQM13_09205 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_09210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_09215 PF05580 SpoIVB peptidase S55 EQM13_09215 PF17820 PDZ domain EQM13_09220 PF13476 AAA domain EQM13_09225 PF02863 Arginine repressor, C-terminal domain EQM13_09225 PF01316 Arginine repressor, DNA binding domain EQM13_09230 PF01728 FtsJ-like methyltransferase EQM13_09230 PF01479 S4 domain EQM13_09245 PF00348 Polyprenyl synthetase EQM13_09250 PF02609 Exonuclease VII small subunit EQM13_09255 PF13742 OB-fold nucleic acid binding domain EQM13_09255 PF02601 Exonuclease VII, large subunit EQM13_09260 PF00814 Glycoprotease family EQM13_09265 PF01029 NusB family EQM13_09280 PF03780 Asp23 family, cell envelope-related function EQM13_09300 PF09546 Stage III sporulation protein AE (spore_III_AE) EQM13_09305 PF06686 Stage III sporulation protein AC/AD protein family EQM13_09330 PF08207 Elongation factor P (EF-P) KOW-like domain EQM13_09330 PF01132 Elongation factor P (EF-P) OB domain EQM13_09330 PF09285 Elongation factor P, C-terminal EQM13_09360 PF00395 S-layer homology domain EQM13_09360 PF00963 Cohesin domain EQM13_09380 PF06750 Bacterial Peptidase A24 N-terminal domain EQM13_09380 PF01478 Type IV leader peptidase family EQM13_09385 PF07963 Prokaryotic N-terminal methylation motif EQM13_09385 PF00114 Pilin (bacterial filament) EQM13_09390 PF00482 Type II secretion system (T2SS), protein F EQM13_09395 PF00437 Type II/IV secretion system protein EQM13_09400 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EQM13_09400 PF00437 Type II/IV secretion system protein EQM13_09405 PF06782 Uncharacterised protein family (UPF0236) EQM13_09415 PF01476 LysM domain EQM13_09415 PF08239 Bacterial SH3 domain EQM13_09415 PF00877 NlpC/P60 family EQM13_09420 PF00392 Bacterial regulatory proteins, gntR family EQM13_09420 PF07729 FCD domain EQM13_09430 PF12838 4Fe-4S dicluster domain EQM13_09435 PF05343 M42 glutamyl aminopeptidase EQM13_09460 PF00990 Diguanylate cyclase, GGDEF domain EQM13_09475 PF12787 EcsC protein family EQM13_09480 PF00155 Aminotransferase class I and II EQM13_09495 PF13426 PAS domain EQM13_09495 PF02954 Bacterial regulatory protein, Fis family EQM13_09495 PF00158 Sigma-54 interaction domain EQM13_09505 PF00005 ABC transporter EQM13_09505 PF00664 ABC transporter transmembrane region EQM13_09510 PF00664 ABC transporter transmembrane region EQM13_09510 PF00005 ABC transporter EQM13_09520 PF13378 Enolase C-terminal domain-like EQM13_09520 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EQM13_09535 PF02653 Branched-chain amino acid transport system / permease component EQM13_09545 PF00005 ABC transporter EQM13_09550 PF12683 Protein of unknown function (DUF3798) EQM13_09555 PF00583 Acetyltransferase (GNAT) family EQM13_09570 PF02424 ApbE family EQM13_09580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EQM13_09580 PF13237 4Fe-4S dicluster domain EQM13_09580 PF13375 RnfC Barrel sandwich hybrid domain EQM13_09580 PF10531 SLBB domain EQM13_09585 PF03116 NQR2, RnfD, RnfE family EQM13_09590 PF04205 FMN-binding domain EQM13_09595 PF02508 Rnf-Nqr subunit, membrane protein EQM13_09600 PF02508 Rnf-Nqr subunit, membrane protein EQM13_09605 PF13187 4Fe-4S dicluster domain EQM13_09605 PF04060 Putative Fe-S cluster EQM13_09605 PF00037 4Fe-4S binding domain EQM13_09625 PF03577 Peptidase family C69 EQM13_09630 PF01116 Fructose-bisphosphate aldolase class-II EQM13_09640 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_09640 PF00107 Zinc-binding dehydrogenase EQM13_09655 PF03611 PTS system sugar-specific permease component EQM13_09665 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_09665 PF00107 Zinc-binding dehydrogenase EQM13_09675 PF02403 Seryl-tRNA synthetase N-terminal domain EQM13_09675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EQM13_09715 PF01548 Transposase EQM13_09715 PF02371 Transposase IS116/IS110/IS902 family EQM13_09720 PF17191 RecG wedge domain EQM13_09720 PF00270 DEAD/DEAH box helicase EQM13_09720 PF13749 Putative ATP-dependent DNA helicase recG C-terminal EQM13_09725 PF00005 ABC transporter EQM13_09730 PF02653 Branched-chain amino acid transport system / permease component EQM13_09740 PF03051 Peptidase C1-like family EQM13_09745 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EQM13_09745 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EQM13_09770 PF00266 Aminotransferase class-V EQM13_09780 PF09827 CRISPR associated protein Cas2 EQM13_09785 PF01867 CRISPR associated protein Cas1 EQM13_09795 PF18395 Cas3 C-terminal domain EQM13_09795 PF00270 DEAD/DEAH box helicase EQM13_09795 PF18019 HD domain EQM13_09825 PF01695 IstB-like ATP binding protein EQM13_09835 PF09827 CRISPR associated protein Cas2 EQM13_09840 PF01867 CRISPR associated protein Cas1 EQM13_09850 PF18395 Cas3 C-terminal domain EQM13_09850 PF00270 DEAD/DEAH box helicase EQM13_09850 PF18019 HD domain EQM13_09885 PF00465 Iron-containing alcohol dehydrogenase EQM13_09890 PF00107 Zinc-binding dehydrogenase EQM13_09890 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_09895 PF00596 Class II Aldolase and Adducin N-terminal domain EQM13_09900 PF03830 PTS system sorbose subfamily IIB component EQM13_09905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_09905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_09910 PF03609 PTS system sorbose-specific iic component EQM13_09915 PF03610 PTS system fructose IIA component EQM13_09915 PF03830 PTS system sorbose subfamily IIB component EQM13_09920 PF01116 Fructose-bisphosphate aldolase class-II EQM13_09925 PF00107 Zinc-binding dehydrogenase EQM13_09925 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_09930 PF03610 PTS system fructose IIA component EQM13_09930 PF00158 Sigma-54 interaction domain EQM13_09930 PF00874 PRD domain EQM13_09945 PF00005 ABC transporter EQM13_09945 PF13732 Domain of unknown function (DUF4162) EQM13_09970 PF01979 Amidohydrolase family EQM13_09975 PF03606 C4-dicarboxylate anaerobic carrier EQM13_09980 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EQM13_09980 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EQM13_09980 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EQM13_09990 PF00534 Glycosyl transferases group 1 EQM13_09990 PF13439 Glycosyltransferase Family 4 EQM13_10010 PF00005 ABC transporter EQM13_10015 PF07730 Histidine kinase EQM13_10020 PF00072 Response regulator receiver domain EQM13_10020 PF00196 Bacterial regulatory proteins, luxR family EQM13_10025 PF02633 Creatinine amidohydrolase EQM13_10030 PF04229 GrpB protein EQM13_10040 PF02371 Transposase IS116/IS110/IS902 family EQM13_10040 PF01548 Transposase EQM13_10045 PF00313 'Cold-shock' DNA-binding domain EQM13_10060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_10060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_10060 PF02378 Phosphotransferase system, EIIC EQM13_10065 PF00834 Ribulose-phosphate 3 epimerase family EQM13_10070 PF03437 BtpA family EQM13_10075 PF03611 PTS system sugar-specific permease component EQM13_10080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_10085 PF05343 M42 glutamyl aminopeptidase EQM13_10090 PF00455 DeoR C terminal sensor domain EQM13_10090 PF08220 DeoR-like helix-turn-helix domain EQM13_10095 PF02633 Creatinine amidohydrolase EQM13_10100 PF00005 ABC transporter EQM13_10105 PF12399 Branched-chain amino acid ATP-binding cassette transporter EQM13_10105 PF00005 ABC transporter EQM13_10115 PF02653 Branched-chain amino acid transport system / permease component EQM13_10120 PF13458 Periplasmic binding protein EQM13_10145 PF04545 Sigma-70, region 4 EQM13_10145 PF04539 Sigma-70 region 3 EQM13_10145 PF00140 Sigma-70 factor, region 1.2 EQM13_10145 PF03979 Sigma-70 factor, region 1.1 EQM13_10145 PF04542 Sigma-70 region 2 EQM13_10155 PF00270 DEAD/DEAH box helicase EQM13_10155 PF08494 DEAD/H associated EQM13_10155 PF00271 Helicase conserved C-terminal domain EQM13_10190 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EQM13_10200 PF11867 Domain of unknown function (DUF3387) EQM13_10200 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EQM13_10200 PF18766 SWI2/SNF2 ATPase EQM13_10220 PF02384 N-6 DNA Methylase EQM13_10230 PF01546 Peptidase family M20/M25/M40 EQM13_10230 PF07687 Peptidase dimerisation domain EQM13_10235 PF03606 C4-dicarboxylate anaerobic carrier EQM13_10270 PF03023 Lipid II flippase MurJ EQM13_10310 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EQM13_10330 PF00144 Beta-lactamase EQM13_10370 PF00583 Acetyltransferase (GNAT) family EQM13_10370 PF13508 Acetyltransferase (GNAT) domain EQM13_10375 PF02146 Sir2 family EQM13_10510 PF06782 Uncharacterised protein family (UPF0236) EQM13_10515 PF00580 UvrD/REP helicase N-terminal domain EQM13_10515 PF13361 UvrD-like helicase C-terminal domain EQM13_10565 PF01695 IstB-like ATP binding protein EQM13_10605 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EQM13_10605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EQM13_10610 PF00132 Bacterial transferase hexapeptide (six repeats) EQM13_10610 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EQM13_10620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EQM13_10620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EQM13_10620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EQM13_10625 PF00132 Bacterial transferase hexapeptide (six repeats) EQM13_10630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EQM13_10640 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EQM13_10660 PF02397 Bacterial sugar transferase EQM13_10670 PF00483 Nucleotidyl transferase EQM13_10680 PF02018 Carbohydrate binding domain EQM13_10680 PF06452 Carbohydrate family 9 binding domain-like EQM13_10680 PF00331 Glycosyl hydrolase family 10 EQM13_10680 PF00395 S-layer homology domain EQM13_10685 PF06452 Carbohydrate family 9 binding domain-like EQM13_10685 PF02018 Carbohydrate binding domain EQM13_10685 PF00331 Glycosyl hydrolase family 10 EQM13_10685 PF00395 S-layer homology domain EQM13_10695 PF13614 AAA domain EQM13_10700 PF13807 G-rich domain on putative tyrosine kinase EQM13_10700 PF02706 Chain length determinant protein EQM13_10705 PF02719 Polysaccharide biosynthesis protein EQM13_10710 PF00300 Histidine phosphatase superfamily (branch 1) EQM13_10745 PF00072 Response regulator receiver domain EQM13_10745 PF00486 Transcriptional regulatory protein, C terminal EQM13_10750 PF01522 Polysaccharide deacetylase EQM13_10760 PF04542 Sigma-70 region 2 EQM13_10760 PF04545 Sigma-70, region 4 EQM13_10765 PF03717 Penicillin-binding Protein dimerisation domain EQM13_10765 PF00905 Penicillin binding protein transpeptidase domain EQM13_10770 PF00485 Phosphoribulokinase / Uridine kinase family EQM13_10775 PF16325 Peptidase family U32 C-terminal domain EQM13_10775 PF01136 Peptidase family U32 EQM13_10780 PF01596 O-methyltransferase EQM13_10785 PF02618 YceG-like family EQM13_10795 PF06133 Control of competence regulator ComK, YlbF/YmcA EQM13_10800 PF00753 Metallo-beta-lactamase superfamily EQM13_10800 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EQM13_10800 PF17770 Ribonuclease J C-terminal domain EQM13_10805 PF01475 Ferric uptake regulator family EQM13_10815 PF03652 Holliday junction resolvase EQM13_10825 PF06135 IreB regulatory phosphoprotein EQM13_10830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EQM13_10830 PF02272 DHHA1 domain EQM13_10830 PF01411 tRNA synthetases class II (A) EQM13_10835 PF01594 AI-2E family transporter EQM13_10845 PF12008 Type I restriction and modification enzyme - subunit R C terminal EQM13_10845 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EQM13_10845 PF18766 SWI2/SNF2 ATPase EQM13_10850 PF01420 Type I restriction modification DNA specificity domain EQM13_10855 PF02384 N-6 DNA Methylase EQM13_10855 PF12161 HsdM N-terminal domain EQM13_10885 PF01592 NifU-like N terminal domain EQM13_10890 PF00266 Aminotransferase class-V EQM13_10895 PF02082 Transcriptional regulator EQM13_10915 PF01370 NAD dependent epimerase/dehydratase family EQM13_10920 PF08264 Anticodon-binding domain of tRNA EQM13_10920 PF00133 tRNA synthetases class I (I, L, M and V) EQM13_10920 PF13603 Leucyl-tRNA synthetase, Domain 2 EQM13_10920 PF09334 tRNA synthetases class I (M) EQM13_10925 PF00152 tRNA synthetases class II (D, K and N) EQM13_10925 PF01336 OB-fold nucleic acid binding domain EQM13_10930 PF16193 AAA C-terminal domain EQM13_10930 PF12002 MgsA AAA+ ATPase C terminal EQM13_10930 PF05496 Holliday junction DNA helicase RuvB P-loop domain EQM13_10935 PF01168 Alanine racemase, N-terminal domain EQM13_10940 PF13941 MutL protein EQM13_10945 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase EQM13_10945 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit EQM13_10945 PF02310 B12 binding domain EQM13_10950 PF16552 D-ornithine 4,5-aminomutase alpha-subunit EQM13_10955 PF00291 Pyridoxal-phosphate dependent enzyme EQM13_10970 PF02954 Bacterial regulatory protein, Fis family EQM13_10970 PF13426 PAS domain EQM13_10970 PF00158 Sigma-54 interaction domain EQM13_10975 PF00512 His Kinase A (phospho-acceptor) domain EQM13_10975 PF00989 PAS fold EQM13_10975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_10975 PF16736 Single Cache-like EQM13_10980 PF00486 Transcriptional regulatory protein, C terminal EQM13_10980 PF00072 Response regulator receiver domain EQM13_10985 PF02578 Multi-copper polyphenol oxidoreductase laccase EQM13_10990 PF03477 ATP cone domain EQM13_10995 PF05239 PRC-barrel domain EQM13_11000 PF04545 Sigma-70, region 4 EQM13_11000 PF04539 Sigma-70 region 3 EQM13_11000 PF04542 Sigma-70 region 2 EQM13_11005 PF04542 Sigma-70 region 2 EQM13_11005 PF04545 Sigma-70, region 4 EQM13_11010 PF03419 Sporulation factor SpoIIGA EQM13_11015 PF00091 Tubulin/FtsZ family, GTPase domain EQM13_11015 PF12327 FtsZ family, C-terminal domain EQM13_11020 PF02491 SHS2 domain inserted in FTSA EQM13_11025 PF06947 Protein of unknown function (DUF1290) EQM13_11040 PF08478 POTRA domain, FtsQ-type EQM13_11040 PF03799 Cell division protein FtsQ EQM13_11045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EQM13_11050 PF03033 Glycosyltransferase family 28 N-terminal domain EQM13_11050 PF04101 Glycosyltransferase family 28 C-terminal domain EQM13_11055 PF01098 Cell cycle protein EQM13_11060 PF02875 Mur ligase family, glutamate ligase domain EQM13_11060 PF08245 Mur ligase middle domain EQM13_11065 PF00953 Glycosyl transferase family 4 EQM13_11070 PF01225 Mur ligase family, catalytic domain EQM13_11070 PF02875 Mur ligase family, glutamate ligase domain EQM13_11070 PF08245 Mur ligase middle domain EQM13_11075 PF03717 Penicillin-binding Protein dimerisation domain EQM13_11075 PF00905 Penicillin binding protein transpeptidase domain EQM13_11075 PF03793 PASTA domain EQM13_11085 PF01795 MraW methylase family EQM13_11090 PF02381 MraZ protein, putative antitoxin-like EQM13_11095 PF01790 Prolipoprotein diacylglyceryl transferase EQM13_11100 PF05193 Peptidase M16 inactive domain EQM13_11100 PF00675 Insulinase (Peptidase family M16) EQM13_11105 PF05193 Peptidase M16 inactive domain EQM13_11115 PF06071 Protein of unknown function (DUF933) EQM13_11115 PF01926 50S ribosome-binding GTPase EQM13_11125 PF01791 DeoC/LacD family aldolase EQM13_11130 PF06130 Phosphate propanoyltransferase EQM13_11145 PF12822 ECF transporter, substrate-specific component EQM13_11160 PF01709 Transcriptional regulator EQM13_11165 PF02540 NAD synthase EQM13_11170 PF01546 Peptidase family M20/M25/M40 EQM13_11175 PF01925 Sulfite exporter TauE/SafE EQM13_11180 PF01925 Sulfite exporter TauE/SafE EQM13_11190 PF09186 Domain of unknown function (DUF1949) EQM13_11190 PF01205 Uncharacterized protein family UPF0029 EQM13_11200 PF01926 50S ribosome-binding GTPase EQM13_11200 PF13167 GTP-binding GTPase N-terminal EQM13_11200 PF16360 GTP-binding GTPase Middle Region EQM13_11210 PF00912 Transglycosylase EQM13_11210 PF00905 Penicillin binding protein transpeptidase domain EQM13_11215 PF03862 SpoVAC/SpoVAEB sporulation membrane protein EQM13_11220 PF07451 Stage V sporulation protein AD (SpoVAD) EQM13_11225 PF03862 SpoVAC/SpoVAEB sporulation membrane protein EQM13_11235 PF12164 Stage V sporulation protein AA EQM13_11240 PF04542 Sigma-70 region 2 EQM13_11240 PF04545 Sigma-70, region 4 EQM13_11240 PF04539 Sigma-70 region 3 EQM13_11245 PF13581 Histidine kinase-like ATPase domain EQM13_11250 PF01740 STAS domain EQM13_11255 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain EQM13_11255 PF00877 NlpC/P60 family EQM13_11260 PF09924 Uncharacterised conserved protein (DUF2156) EQM13_11260 PF03706 Lysylphosphatidylglycerol synthase TM region EQM13_11265 PF00899 ThiF family EQM13_11305 PF01784 NIF3 (NGG1p interacting factor 3) EQM13_11310 PF05175 Methyltransferase small domain EQM13_11310 PF17827 PrmC N-terminal domain EQM13_11315 PF04545 Sigma-70, region 4 EQM13_11315 PF04539 Sigma-70 region 3 EQM13_11315 PF04542 Sigma-70 region 2 EQM13_11315 PF00140 Sigma-70 factor, region 1.2 EQM13_11315 PF03979 Sigma-70 factor, region 1.1 EQM13_11320 PF01807 CHC2 zinc finger EQM13_11320 PF08275 DNA primase catalytic core, N-terminal domain EQM13_11320 PF10410 DnaB-helicase binding domain of primase EQM13_11325 PF01966 HD domain EQM13_11325 PF13286 Phosphohydrolase-associated domain EQM13_11330 PF03618 Kinase/pyrophosphorylase EQM13_11335 PF08279 HTH domain EQM13_11335 PF00571 CBS domain EQM13_11340 PF02092 Glycyl-tRNA synthetase beta subunit EQM13_11340 PF05746 DALR anticodon binding domain EQM13_11345 PF02091 Glycyl-tRNA synthetase alpha subunit EQM13_11355 PF11967 Recombination protein O N terminal EQM13_11355 PF02565 Recombination protein O C terminal EQM13_11360 PF07650 KH domain EQM13_11360 PF01926 50S ribosome-binding GTPase EQM13_11365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EQM13_11370 PF11258 Protein of unknown function (DUF3048) N-terminal domain EQM13_11370 PF17479 Protein of unknown function (DUF3048) C-terminal domain EQM13_11375 PF01219 Prokaryotic diacylglycerol kinase EQM13_11380 PF02130 Uncharacterized protein family UPF0054 EQM13_11385 PF07698 7TM receptor with intracellular HD hydrolase EQM13_11385 PF07697 7TM-HD extracellular EQM13_11385 PF01966 HD domain EQM13_11390 PF02562 PhoH-like protein EQM13_11395 PF06898 Putative stage IV sporulation protein YqfD EQM13_11400 PF07873 YabP family EQM13_11410 PF12127 SigmaW regulon antibacterial EQM13_11415 PF01957 NfeD-like C-terminal, partner-binding EQM13_11415 PF01972 Serine dehydrogenase proteinase EQM13_11420 PF09424 Yqey-like protein EQM13_11425 PF01165 Ribosomal protein S21 EQM13_11430 PF01230 HIT domain EQM13_11435 PF01938 TRAM domain EQM13_11435 PF04055 Radical SAM superfamily EQM13_11435 PF00919 Uncharacterized protein family UPF0004 EQM13_11440 PF04452 RNA methyltransferase EQM13_11450 PF00226 DnaJ domain EQM13_11450 PF01556 DnaJ C terminal domain EQM13_11450 PF00684 DnaJ central domain EQM13_11455 PF00012 Hsp70 protein EQM13_11460 PF01025 GrpE EQM13_11465 PF01628 HrcA protein C terminal domain EQM13_11470 PF04055 Radical SAM superfamily EQM13_11470 PF06969 HemN C-terminal domain EQM13_11475 PF00679 Elongation factor G C-terminus EQM13_11475 PF14492 Elongation Factor G, domain II EQM13_11475 PF00009 Elongation factor Tu GTP binding domain EQM13_11475 PF03144 Elongation factor Tu domain 2 EQM13_11475 PF06421 GTP-binding protein LepA C-terminus EQM13_11485 PF10502 Signal peptidase, peptidase S26 EQM13_11495 PF03418 Germination protease EQM13_11500 PF01649 Ribosomal protein S20 EQM13_11505 PF06144 DNA polymerase III, delta subunit EQM13_11510 PF00753 Metallo-beta-lactamase superfamily EQM13_11510 PF13567 Domain of unknown function (DUF4131) EQM13_11510 PF03772 Competence protein EQM13_11515 PF02272 DHHA1 domain EQM13_11515 PF01411 tRNA synthetases class II (A) EQM13_11515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EQM13_11525 PF00881 Nitroreductase family EQM13_11535 PF00155 Aminotransferase class I and II EQM13_11540 PF02548 Ketopantoate hydroxymethyltransferase EQM13_11550 PF01235 Sodium:alanine symporter family EQM13_11565 PF00664 ABC transporter transmembrane region EQM13_11565 PF00005 ABC transporter EQM13_11570 PF00005 ABC transporter EQM13_11570 PF00664 ABC transporter transmembrane region EQM13_11580 PF05036 Sporulation related domain EQM13_11580 PF01520 N-acetylmuramoyl-L-alanine amidase EQM13_11585 PF01548 Transposase EQM13_11585 PF02371 Transposase IS116/IS110/IS902 family EQM13_11610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_11610 PF00989 PAS fold EQM13_11610 PF00512 His Kinase A (phospho-acceptor) domain EQM13_11610 PF16736 Single Cache-like EQM13_11615 PF00072 Response regulator receiver domain EQM13_11615 PF00486 Transcriptional regulatory protein, C terminal EQM13_11620 PF00009 Elongation factor Tu GTP binding domain EQM13_11620 PF03144 Elongation factor Tu domain 2 EQM13_11620 PF09105 Elongation factor SelB, winged helix EQM13_11620 PF09106 Elongation factor SelB, winged helix EQM13_11620 PF09107 Elongation factor SelB, winged helix EQM13_11625 PF12390 Selenocysteine synthase N terminal EQM13_11625 PF03841 L-seryl-tRNA selenium transferase EQM13_11640 PF07943 Penicillin-binding protein 5, C-terminal domain EQM13_11640 PF00768 D-alanyl-D-alanine carboxypeptidase EQM13_11645 PF01042 Endoribonuclease L-PSP EQM13_11655 PF03816 Cell envelope-related transcriptional attenuator domain EQM13_11660 PF01966 HD domain EQM13_11665 PF01467 Cytidylyltransferase-like EQM13_11680 PF01018 GTP1/OBG EQM13_11680 PF01926 50S ribosome-binding GTPase EQM13_11680 PF09269 Domain of unknown function (DUF1967) EQM13_11685 PF01016 Ribosomal L27 protein EQM13_11695 PF00829 Ribosomal prokaryotic L21 protein EQM13_11700 PF00575 S1 RNA binding domain EQM13_11700 PF10150 Ribonuclease E/G family EQM13_11710 PF04055 Radical SAM superfamily EQM13_11710 PF18693 TRAM domain EQM13_11710 PF00919 Uncharacterized protein family UPF0004 EQM13_11720 PF03776 Septum formation topological specificity factor MinE EQM13_11725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EQM13_11730 PF03775 Septum formation inhibitor MinC, C-terminal domain EQM13_11735 PF00905 Penicillin binding protein transpeptidase domain EQM13_11735 PF03717 Penicillin-binding Protein dimerisation domain EQM13_11755 PF04002 RadC-like JAB domain EQM13_11760 PF02545 Maf-like protein EQM13_11795 PF13581 Histidine kinase-like ATPase domain EQM13_11810 PF00005 ABC transporter EQM13_11815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_11820 PF00486 Transcriptional regulatory protein, C terminal EQM13_11820 PF00072 Response regulator receiver domain EQM13_11835 PF00005 ABC transporter EQM13_11840 PF00072 Response regulator receiver domain EQM13_11840 PF00486 Transcriptional regulatory protein, C terminal EQM13_11845 PF00072 Response regulator receiver domain EQM13_11845 PF13426 PAS domain EQM13_11845 PF00512 His Kinase A (phospho-acceptor) domain EQM13_11845 PF08448 PAS fold EQM13_11845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_11890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_11900 PF01121 Dephospho-CoA kinase EQM13_11905 PF01367 5'-3' exonuclease, C-terminal SAM fold EQM13_11905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EQM13_11905 PF00476 DNA polymerase family A EQM13_11925 PF00005 ABC transporter EQM13_11925 PF00664 ABC transporter transmembrane region EQM13_11945 PF03830 PTS system sorbose subfamily IIB component EQM13_11945 PF03610 PTS system fructose IIA component EQM13_11950 PF01081 KDPG and KHG aldolase EQM13_11965 PF01544 CorA-like Mg2+ transporter protein EQM13_11995 PF00654 Voltage gated chloride channel EQM13_12005 PF00005 ABC transporter EQM13_12020 PF00664 ABC transporter transmembrane region EQM13_12020 PF00005 ABC transporter EQM13_12025 PF00664 ABC transporter transmembrane region EQM13_12025 PF00005 ABC transporter EQM13_12030 PF13537 Glutamine amidotransferase domain EQM13_12030 PF00733 Asparagine synthase EQM13_12035 PF01569 PAP2 superfamily EQM13_12040 PF00005 ABC transporter EQM13_12040 PF02687 FtsX-like permease family EQM13_12040 PF12704 MacB-like periplasmic core domain EQM13_12050 PF03099 Biotin/lipoate A/B protein ligase family EQM13_12050 PF10437 Bacterial lipoate protein ligase C-terminus EQM13_12055 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQM13_12055 PF18267 Rubredoxin NAD+ reductase C-terminal domain EQM13_12055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EQM13_12055 PF04324 BFD-like [2Fe-2S] binding domain EQM13_12055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EQM13_12060 PF13416 Bacterial extracellular solute-binding protein EQM13_12065 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_12070 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_12075 PF00005 ABC transporter EQM13_12075 PF08402 TOBE domain EQM13_12080 PF07883 Cupin domain EQM13_12080 PF01381 Helix-turn-helix EQM13_12090 PF04011 LemA family EQM13_12105 PF02568 Thiamine biosynthesis protein (ThiI) EQM13_12105 PF02926 THUMP domain EQM13_12110 PF00266 Aminotransferase class-V EQM13_12115 PF00710 Asparaginase, N-terminal EQM13_12115 PF17763 Glutaminase/Asparaginase C-terminal domain EQM13_12135 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EQM13_12135 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EQM13_12140 PF07670 Nucleoside recognition EQM13_12145 PF07670 Nucleoside recognition EQM13_12150 PF00963 Cohesin domain EQM13_12150 PF00395 S-layer homology domain EQM13_12155 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) EQM13_12155 PF07581 The GLUG motif EQM13_12160 PF01869 BadF/BadG/BcrA/BcrD ATPase family EQM13_12180 PF00929 Exonuclease EQM13_12180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EQM13_12180 PF07733 Bacterial DNA polymerase III alpha NTPase domain EQM13_12180 PF14579 Helix-hairpin-helix motif EQM13_12180 PF02811 PHP domain EQM13_12325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EQM13_12325 PF03466 LysR substrate binding domain EQM13_12330 PF02127 Aminopeptidase I zinc metalloprotease (M18) EQM13_12335 PF00196 Bacterial regulatory proteins, luxR family EQM13_12335 PF00072 Response regulator receiver domain EQM13_12340 PF05384 Sensor protein DegS EQM13_12340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_12340 PF07730 Histidine kinase EQM13_12345 PF01584 CheW-like domain EQM13_12355 PF00356 Bacterial regulatory proteins, lacI family EQM13_12360 PF00990 Diguanylate cyclase, GGDEF domain EQM13_12365 PF01047 MarR family EQM13_12370 PF00781 Diacylglycerol kinase catalytic domain EQM13_12380 PF00664 ABC transporter transmembrane region EQM13_12380 PF00005 ABC transporter EQM13_12385 PF00664 ABC transporter transmembrane region EQM13_12385 PF00005 ABC transporter EQM13_12395 PF11495 Archaeal transcriptional regulator TrmB EQM13_12395 PF01978 Sugar-specific transcriptional regulator TrmB EQM13_12405 PF02423 Ornithine cyclodeaminase/mu-crystallin family EQM13_12420 PF01053 Cys/Met metabolism PLP-dependent enzyme EQM13_12430 PF05221 S-adenosyl-L-homocysteine hydrolase EQM13_12430 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EQM13_12435 PF00005 ABC transporter EQM13_12435 PF12704 MacB-like periplasmic core domain EQM13_12435 PF02687 FtsX-like permease family EQM13_12440 PF00672 HAMP domain EQM13_12440 PF13426 PAS domain EQM13_12440 PF00512 His Kinase A (phospho-acceptor) domain EQM13_12440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_12445 PF00486 Transcriptional regulatory protein, C terminal EQM13_12445 PF00072 Response regulator receiver domain EQM13_12450 PF03853 YjeF-related protein N-terminus EQM13_12455 PF01212 Beta-eliminating lyase EQM13_12465 PF00004 ATPase family associated with various cellular activities (AAA) EQM13_12465 PF17862 AAA+ lid domain EQM13_12465 PF01434 Peptidase family M41 EQM13_12470 PF02554 Carbon starvation protein CstA EQM13_12470 PF13722 5TM C-terminal transporter carbon starvation CstA EQM13_12485 PF00849 RNA pseudouridylate synthase EQM13_12490 PF01513 ATP-NAD kinase EQM13_12495 PF01432 Peptidase family M3 EQM13_12495 PF08439 Oligopeptidase F EQM13_12500 PF00905 Penicillin binding protein transpeptidase domain EQM13_12505 PF01098 Cell cycle protein EQM13_12510 PF16697 Inner membrane component of T3SS, cytoplasmic domain EQM13_12520 PF01255 Putative undecaprenyl diphosphate synthase EQM13_12525 PF03315 Serine dehydratase beta chain EQM13_12530 PF03313 Serine dehydratase alpha chain EQM13_12535 PF01467 Cytidylyltransferase-like EQM13_12565 PF01867 CRISPR associated protein Cas1 EQM13_12605 PF00857 Isochorismatase family EQM13_12610 PF00578 AhpC/TSA family EQM13_12620 PF12848 ABC transporter EQM13_12620 PF16326 ABC transporter C-terminal domain EQM13_12620 PF00005 ABC transporter EQM13_12630 PF00293 NUDIX domain EQM13_12635 PF02796 Helix-turn-helix domain of resolvase EQM13_12635 PF00665 Integrase core domain EQM13_12655 PF00005 ABC transporter EQM13_12670 PF00005 ABC transporter EQM13_12675 PF01209 ubiE/COQ5 methyltransferase family EQM13_12685 PF00005 ABC transporter EQM13_12690 PF02517 CPBP intramembrane metalloprotease EQM13_12710 PF01695 IstB-like ATP binding protein EQM13_12735 PF07690 Major Facilitator Superfamily EQM13_12750 PF00664 ABC transporter transmembrane region EQM13_12750 PF00005 ABC transporter EQM13_12765 PF00005 ABC transporter EQM13_12810 PF04397 LytTr DNA-binding domain EQM13_12810 PF00072 Response regulator receiver domain EQM13_12815 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EQM13_12815 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EQM13_12815 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQM13_12820 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EQM13_12820 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EQM13_12820 PF00037 4Fe-4S binding domain EQM13_12830 PF06782 Uncharacterised protein family (UPF0236) EQM13_12835 PF10091 Putative glucoamylase EQM13_12835 PF06165 Glycosyltransferase family 36 EQM13_12835 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain EQM13_12840 PF00483 Nucleotidyl transferase EQM13_12845 PF00005 ABC transporter EQM13_12845 PF00664 ABC transporter transmembrane region EQM13_12850 PF00664 ABC transporter transmembrane region EQM13_12850 PF00005 ABC transporter EQM13_12855 PF02310 B12 binding domain EQM13_12855 PF04055 Radical SAM superfamily EQM13_12865 PF05193 Peptidase M16 inactive domain EQM13_12865 PF00675 Insulinase (Peptidase family M16) EQM13_12870 PF01695 IstB-like ATP binding protein EQM13_12880 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EQM13_12880 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EQM13_12880 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EQM13_12880 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EQM13_12885 PF07687 Peptidase dimerisation domain EQM13_12885 PF01546 Peptidase family M20/M25/M40 EQM13_12900 PF00293 NUDIX domain EQM13_12910 PF12849 PBP superfamily domain EQM13_12915 PF02254 TrkA-N domain EQM13_12915 PF02080 TrkA-C domain EQM13_12920 PF02254 TrkA-N domain EQM13_12920 PF02080 TrkA-C domain EQM13_12925 PF00690 Cation transporter/ATPase, N-terminus EQM13_12925 PF00689 Cation transporting ATPase, C-terminus EQM13_12935 PF01668 SmpB protein EQM13_12940 PF00575 S1 RNA binding domain EQM13_12940 PF00773 RNB domain EQM13_12940 PF08206 Ribonuclease B OB domain EQM13_12940 PF17876 Cold shock domain EQM13_12945 PF07478 D-ala D-ala ligase C-terminus EQM13_12945 PF01820 D-ala D-ala ligase N-terminus EQM13_12950 PF01225 Mur ligase family, catalytic domain EQM13_12950 PF02875 Mur ligase family, glutamate ligase domain EQM13_12950 PF08245 Mur ligase middle domain EQM13_12955 PF12146 Serine aminopeptidase, S33 EQM13_12965 PF00113 Enolase, C-terminal TIM barrel domain EQM13_12965 PF03952 Enolase, N-terminal domain EQM13_12970 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EQM13_12970 PF01676 Metalloenzyme superfamily EQM13_12975 PF00121 Triosephosphate isomerase EQM13_12980 PF00162 Phosphoglycerate kinase EQM13_12985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EQM13_12985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EQM13_12990 PF04198 Putative sugar-binding domain EQM13_12995 PF00309 Sigma-54 factor, Activator interacting domain (AID) EQM13_12995 PF04963 Sigma-54 factor, core binding domain EQM13_12995 PF04552 Sigma-54, DNA binding domain EQM13_13015 PF00301 Rubredoxin EQM13_13015 PF00258 Flavodoxin EQM13_13015 PF00753 Metallo-beta-lactamase superfamily EQM13_13020 PF01965 DJ-1/PfpI family EQM13_13025 PF02653 Branched-chain amino acid transport system / permease component EQM13_13030 PF02653 Branched-chain amino acid transport system / permease component EQM13_13035 PF00005 ABC transporter EQM13_13040 PF02608 ABC transporter substrate-binding protein PnrA-like EQM13_13045 PF02504 Fatty acid synthesis protein EQM13_13050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EQM13_13065 PF09338 Glycine/sarcosine/betaine reductase component B subunits EQM13_13070 PF00085 Thioredoxin EQM13_13075 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQM13_13085 PF00588 SpoU rRNA Methylase family EQM13_13095 PF00005 ABC transporter EQM13_13100 PF01032 FecCD transport family EQM13_13105 PF01497 Periplasmic binding protein EQM13_13120 PF04294 VanW like protein EQM13_13125 PF02491 SHS2 domain inserted in FTSA EQM13_13130 PF00730 HhH-GPD superfamily base excision DNA repair protein EQM13_13130 PF00633 Helix-hairpin-helix motif EQM13_13130 PF10576 Iron-sulfur binding domain of endonuclease III EQM13_13140 PF00155 Aminotransferase class I and II EQM13_13145 PF08331 Domain of unknown function (DUF1730) EQM13_13150 PF01098 Cell cycle protein EQM13_13155 PF00005 ABC transporter EQM13_13160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_13160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_13165 PF09297 NADH pyrophosphatase zinc ribbon domain EQM13_13165 PF00293 NUDIX domain EQM13_13185 PF03551 Transcriptional regulator PadR-like family EQM13_13195 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_13200 PF00557 Metallopeptidase family M24 EQM13_13210 PF01226 Formate/nitrite transporter EQM13_13215 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EQM13_13215 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EQM13_13220 PF04961 Formiminotransferase-cyclodeaminase EQM13_13225 PF01268 Formate--tetrahydrofolate ligase EQM13_13230 PF02311 AraC-like ligand binding domain EQM13_13230 PF12833 Helix-turn-helix domain EQM13_13235 PF07694 5TMR of 5TMR-LYT EQM13_13235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_13235 PF06580 Histidine kinase EQM13_13240 PF01235 Sodium:alanine symporter family EQM13_13245 PF00464 Serine hydroxymethyltransferase EQM13_13255 PF01053 Cys/Met metabolism PLP-dependent enzyme EQM13_13260 PF00403 Heavy-metal-associated domain EQM13_13265 PF01569 PAP2 superfamily EQM13_13270 PF00580 UvrD/REP helicase N-terminal domain EQM13_13270 PF13361 UvrD-like helicase C-terminal domain EQM13_13285 PF13419 Haloacid dehalogenase-like hydrolase EQM13_13310 PF02645 Uncharacterised protein, DegV family COG1307 EQM13_13320 PF00704 Glycosyl hydrolases family 18 EQM13_13325 PF07687 Peptidase dimerisation domain EQM13_13325 PF01546 Peptidase family M20/M25/M40 EQM13_13335 PF01063 Amino-transferase class IV EQM13_13345 PF13091 PLD-like domain EQM13_13345 PF13396 Phospholipase_D-nuclease N-terminal EQM13_13350 PF00679 Elongation factor G C-terminus EQM13_13350 PF14492 Elongation Factor G, domain II EQM13_13350 PF00009 Elongation factor Tu GTP binding domain EQM13_13350 PF03144 Elongation factor Tu domain 2 EQM13_13360 PF00664 ABC transporter transmembrane region EQM13_13360 PF00005 ABC transporter EQM13_13385 PF13186 Iron-sulfur cluster-binding domain EQM13_13385 PF04055 Radical SAM superfamily EQM13_13390 PF00005 ABC transporter EQM13_13400 PF00005 ABC transporter EQM13_13405 PF00005 ABC transporter EQM13_13405 PF12399 Branched-chain amino acid ATP-binding cassette transporter EQM13_13410 PF02653 Branched-chain amino acid transport system / permease component EQM13_13410 PF11862 Domain of unknown function (DUF3382) EQM13_13415 PF02653 Branched-chain amino acid transport system / permease component EQM13_13420 PF13458 Periplasmic binding protein EQM13_13425 PF01380 SIS domain EQM13_13425 PF01418 Helix-turn-helix domain, rpiR family EQM13_13430 PF03610 PTS system fructose IIA component EQM13_13430 PF03830 PTS system sorbose subfamily IIB component EQM13_13435 PF01238 Phosphomannose isomerase type I EQM13_13440 PF01238 Phosphomannose isomerase type I EQM13_13445 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_13450 PF03830 PTS system sorbose subfamily IIB component EQM13_13455 PF00072 Response regulator receiver domain EQM13_13455 PF08664 YcbB domain EQM13_13460 PF17203 Single cache domain 3 EQM13_13460 PF00989 PAS fold EQM13_13460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_13460 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EQM13_13475 PF00301 Rubredoxin EQM13_13480 PF01926 50S ribosome-binding GTPase EQM13_13485 PF00004 ATPase family associated with various cellular activities (AAA) EQM13_13485 PF05362 Lon protease (S16) C-terminal proteolytic domain EQM13_13485 PF02190 ATP-dependent protease La (LON) substrate-binding domain EQM13_13490 PF06689 ClpX C4-type zinc finger EQM13_13490 PF10431 C-terminal, D2-small domain, of ClpB protein EQM13_13490 PF07724 AAA domain (Cdc48 subfamily) EQM13_13495 PF00574 Clp protease EQM13_13500 PF05697 Bacterial trigger factor protein (TF) EQM13_13500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EQM13_13500 PF05698 Bacterial trigger factor protein (TF) C-terminus EQM13_13515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_13515 PF00005 ABC transporter EQM13_13520 PF00005 ABC transporter EQM13_13520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_13525 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_13525 PF12911 N-terminal TM domain of oligopeptide transport permease C EQM13_13530 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_13535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_13550 PF02645 Uncharacterised protein, DegV family COG1307 EQM13_13555 PF02915 Rubrerythrin EQM13_13560 PF01966 HD domain EQM13_13575 PF00293 NUDIX domain EQM13_13580 PF13302 Acetyltransferase (GNAT) domain EQM13_13595 PF01594 AI-2E family transporter EQM13_13600 PF05227 CHASE3 domain EQM13_13600 PF00672 HAMP domain EQM13_13600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EQM13_13610 PF03033 Glycosyltransferase family 28 N-terminal domain EQM13_13610 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase EQM13_13625 PF00005 ABC transporter EQM13_13630 PF00293 NUDIX domain EQM13_13660 PF13401 AAA domain EQM13_13660 PF11426 Tn7 transposition regulator TnsC EQM13_13665 PF00665 Integrase core domain EQM13_13670 PF08722 TnsA endonuclease N terminal EQM13_13670 PF08721 TnsA endonuclease C terminal EQM13_13705 PF00665 Integrase core domain EQM13_13705 PF02796 Helix-turn-helix domain of resolvase EQM13_13715 PF13361 UvrD-like helicase C-terminal domain EQM13_13715 PF00580 UvrD/REP helicase N-terminal domain EQM13_13720 PF02463 RecF/RecN/SMC N terminal domain EQM13_13730 PF00239 Resolvase, N terminal domain EQM13_13730 PF02796 Helix-turn-helix domain of resolvase EQM13_13760 PF01695 IstB-like ATP binding protein EQM13_13795 PF08003 Protein of unknown function (DUF1698) EQM13_13815 PF01380 SIS domain EQM13_13820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EQM13_13820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EQM13_13820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EQM13_13820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EQM13_13825 PF01743 Poly A polymerase head domain EQM13_13825 PF12627 Probable RNA and SrmB- binding site of polymerase A EQM13_13825 PF13735 tRNA nucleotidyltransferase domain 2 putative EQM13_13830 PF00109 Beta-ketoacyl synthase, N-terminal domain EQM13_13830 PF02801 Beta-ketoacyl synthase, C-terminal domain EQM13_13835 PF00550 Phosphopantetheine attachment site EQM13_13845 PF00698 Acyl transferase domain EQM13_13850 PF03060 Nitronate monooxygenase EQM13_13855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EQM13_13855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EQM13_13860 PF07977 FabA-like domain EQM13_13865 PF01979 Amidohydrolase family EQM13_13875 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_13880 PF03609 PTS system sorbose-specific iic component EQM13_13885 PF03830 PTS system sorbose subfamily IIB component EQM13_13890 PF00158 Sigma-54 interaction domain EQM13_13890 PF00874 PRD domain EQM13_13890 PF03610 PTS system fructose IIA component EQM13_13900 PF00291 Pyridoxal-phosphate dependent enzyme EQM13_13910 PF02558 Ketopantoate reductase PanE/ApbA EQM13_13910 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain EQM13_13915 PF03313 Serine dehydratase alpha chain EQM13_13940 PF10609 NUBPL iron-transfer P-loop NTPase EQM13_13945 PF00871 Acetokinase family EQM13_13950 PF01515 Phosphate acetyl/butaryl transferase EQM13_13955 PF00871 Acetokinase family EQM13_13965 PF02457 DisA bacterial checkpoint controller nucleotide-binding EQM13_13975 PF13367 PrsW family intramembrane metalloprotease EQM13_13980 PF13520 Amino acid permease EQM13_13985 PF05524 PEP-utilising enzyme, N-terminal EQM13_13985 PF00391 PEP-utilising enzyme, mobile domain EQM13_13985 PF02896 PEP-utilising enzyme, TIM barrel domain EQM13_13990 PF00381 PTS HPr component phosphorylation site EQM13_13995 PF17248 Family of unknown function (DUF5317) EQM13_14010 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit EQM13_14015 PF01678 Diaminopimelate epimerase EQM13_14020 PF04198 Putative sugar-binding domain EQM13_14030 PF03608 PTS system enzyme II sorbitol-specific factor EQM13_14035 PF07663 Sorbitol phosphotransferase enzyme II C-terminus EQM13_14035 PF03612 Sorbitol phosphotransferase enzyme II N-terminus EQM13_14050 PF01116 Fructose-bisphosphate aldolase class-II EQM13_14065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EQM13_14065 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EQM13_14070 PF00269 Small, acid-soluble spore proteins, alpha/beta type EQM13_14110 PF00465 Iron-containing alcohol dehydrogenase EQM13_14115 PF00107 Zinc-binding dehydrogenase EQM13_14115 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_14120 PF00701 Dihydrodipicolinate synthetase family EQM13_14125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_14125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_14130 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_14140 PF03830 PTS system sorbose subfamily IIB component EQM13_14150 PF00158 Sigma-54 interaction domain EQM13_14150 PF00874 PRD domain EQM13_14150 PF03610 PTS system fructose IIA component EQM13_14165 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EQM13_14170 PF00664 ABC transporter transmembrane region EQM13_14170 PF00005 ABC transporter EQM13_14175 PF00664 ABC transporter transmembrane region EQM13_14175 PF00005 ABC transporter EQM13_14205 PF01520 N-acetylmuramoyl-L-alanine amidase EQM13_14210 PF07683 Cobalamin synthesis protein cobW C-terminal domain EQM13_14210 PF02492 CobW/HypB/UreG, nucleotide-binding domain EQM13_14225 PF03358 NADPH-dependent FMN reductase EQM13_14230 PF00380 Ribosomal protein S9/S16 EQM13_14235 PF00572 Ribosomal protein L13 EQM13_14240 PF01416 tRNA pseudouridine synthase EQM13_14245 PF02361 Cobalt transport protein EQM13_14250 PF00005 ABC transporter EQM13_14255 PF00005 ABC transporter EQM13_14260 PF01196 Ribosomal protein L17 EQM13_14265 PF01000 RNA polymerase Rpb3/RpoA insert domain EQM13_14265 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EQM13_14265 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EQM13_14270 PF00163 Ribosomal protein S4/S9 N-terminal domain EQM13_14270 PF01479 S4 domain EQM13_14275 PF00411 Ribosomal protein S11 EQM13_14280 PF00416 Ribosomal protein S13/S18 EQM13_14285 PF00444 Ribosomal protein L36 EQM13_14290 PF01176 Translation initiation factor 1A / IF-1 EQM13_14300 PF05191 Adenylate kinase, active site lid EQM13_14305 PF00344 SecY translocase EQM13_14310 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EQM13_14315 PF00327 Ribosomal protein L30p/L7e EQM13_14320 PF00333 Ribosomal protein S5, N-terminal domain EQM13_14320 PF03719 Ribosomal protein S5, C-terminal domain EQM13_14325 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EQM13_14330 PF00347 Ribosomal protein L6 EQM13_14335 PF00410 Ribosomal protein S8 EQM13_14340 PF00253 Ribosomal protein S14p/S29e EQM13_14345 PF00673 ribosomal L5P family C-terminus EQM13_14345 PF00281 Ribosomal protein L5 EQM13_14350 PF00467 KOW motif EQM13_14350 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EQM13_14355 PF00238 Ribosomal protein L14p/L23e EQM13_14360 PF00366 Ribosomal protein S17 EQM13_14365 PF00831 Ribosomal L29 protein EQM13_14370 PF00252 Ribosomal protein L16p/L10e EQM13_14375 PF07650 KH domain EQM13_14375 PF00189 Ribosomal protein S3, C-terminal domain EQM13_14380 PF00237 Ribosomal protein L22p/L17e EQM13_14385 PF00203 Ribosomal protein S19 EQM13_14390 PF00181 Ribosomal Proteins L2, RNA binding domain EQM13_14390 PF03947 Ribosomal Proteins L2, C-terminal domain EQM13_14395 PF00276 Ribosomal protein L23 EQM13_14400 PF00573 Ribosomal protein L4/L1 family EQM13_14405 PF00297 Ribosomal protein L3 EQM13_14410 PF00338 Ribosomal protein S10p/S20e EQM13_14415 PF00009 Elongation factor Tu GTP binding domain EQM13_14415 PF03144 Elongation factor Tu domain 2 EQM13_14415 PF03143 Elongation factor Tu C-terminal domain EQM13_14420 PF00679 Elongation factor G C-terminus EQM13_14420 PF14492 Elongation Factor G, domain II EQM13_14420 PF03764 Elongation factor G, domain IV EQM13_14420 PF00009 Elongation factor Tu GTP binding domain EQM13_14420 PF03144 Elongation factor Tu domain 2 EQM13_14425 PF00177 Ribosomal protein S7p/S5e EQM13_14430 PF00164 Ribosomal protein S12/S23 EQM13_14435 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family EQM13_14440 PF04998 RNA polymerase Rpb1, domain 5 EQM13_14440 PF05000 RNA polymerase Rpb1, domain 4 EQM13_14440 PF04997 RNA polymerase Rpb1, domain 1 EQM13_14440 PF00623 RNA polymerase Rpb1, domain 2 EQM13_14440 PF04983 RNA polymerase Rpb1, domain 3 EQM13_14445 PF04563 RNA polymerase beta subunit EQM13_14445 PF04561 RNA polymerase Rpb2, domain 2 EQM13_14445 PF04565 RNA polymerase Rpb2, domain 3 EQM13_14445 PF10385 RNA polymerase beta subunit external 1 domain EQM13_14445 PF00562 RNA polymerase Rpb2, domain 6 EQM13_14445 PF04560 RNA polymerase Rpb2, domain 7 EQM13_14450 PF00542 Ribosomal protein L7/L12 C-terminal domain EQM13_14450 PF16320 Ribosomal protein L7/L12 dimerisation domain EQM13_14455 PF00466 Ribosomal protein L10 EQM13_14460 PF00687 Ribosomal protein L1p/L10e family EQM13_14465 PF00298 Ribosomal protein L11, RNA binding domain EQM13_14465 PF03946 Ribosomal protein L11, N-terminal domain EQM13_14470 PF02357 Transcription termination factor nusG EQM13_14470 PF00467 KOW motif EQM13_14475 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EQM13_14480 PF00471 Ribosomal protein L33 EQM13_14485 PF03144 Elongation factor Tu domain 2 EQM13_14485 PF03143 Elongation factor Tu C-terminal domain EQM13_14485 PF00009 Elongation factor Tu GTP binding domain EQM13_14495 PF04542 Sigma-70 region 2 EQM13_14495 PF08281 Sigma-70, region 4 EQM13_14500 PF05991 YacP-like NYN domain EQM13_14505 PF00588 SpoU rRNA Methylase family EQM13_14505 PF08032 RNA 2'-O ribose methyltransferase substrate binding EQM13_14510 PF02511 Thymidylate synthase complementing protein EQM13_14515 PF00636 Ribonuclease III domain EQM13_14520 PF01406 tRNA synthetases class I (C) catalytic domain EQM13_14520 PF09190 DALR domain EQM13_14525 PF00749 tRNA synthetases class I (E and Q), catalytic domain EQM13_14535 PF03129 Anticodon binding domain EQM13_14535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EQM13_14535 PF04073 Aminoacyl-tRNA editing domain EQM13_14540 PF02542 YgbB family EQM13_14545 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EQM13_14555 PF02559 CarD-like/TRCF domain EQM13_14565 PF10635 DisA bacterial checkpoint controller linker region EQM13_14565 PF02457 DisA bacterial checkpoint controller nucleotide-binding EQM13_14570 PF18073 Rubredoxin metal binding domain EQM13_14575 PF10431 C-terminal, D2-small domain, of ClpB protein EQM13_14575 PF17871 AAA lid domain EQM13_14575 PF07724 AAA domain (Cdc48 subfamily) EQM13_14575 PF00004 ATPase family associated with various cellular activities (AAA) EQM13_14575 PF02861 Clp amino terminal domain, pathogenicity island component EQM13_14580 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain EQM13_14585 PF02151 UvrB/uvrC motif EQM13_14590 PF17727 CtsR C-terminal dimerization domain EQM13_14590 PF05848 CtsR N-terminal HTH domain EQM13_14595 PF00679 Elongation factor G C-terminus EQM13_14595 PF14492 Elongation Factor G, domain II EQM13_14595 PF03764 Elongation factor G, domain IV EQM13_14595 PF00009 Elongation factor Tu GTP binding domain EQM13_14595 PF03144 Elongation factor Tu domain 2 EQM13_14600 PF00155 Aminotransferase class I and II EQM13_14605 PF00005 ABC transporter EQM13_14610 PF12399 Branched-chain amino acid ATP-binding cassette transporter EQM13_14610 PF00005 ABC transporter EQM13_14615 PF11862 Domain of unknown function (DUF3382) EQM13_14615 PF02653 Branched-chain amino acid transport system / permease component EQM13_14620 PF02653 Branched-chain amino acid transport system / permease component EQM13_14625 PF13458 Periplasmic binding protein EQM13_14630 PF03816 Cell envelope-related transcriptional attenuator domain EQM13_14645 PF08264 Anticodon-binding domain of tRNA EQM13_14645 PF00133 tRNA synthetases class I (I, L, M and V) EQM13_14650 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQM13_14650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EQM13_14655 PF00364 Biotin-requiring enzyme EQM13_14655 PF02817 e3 binding domain EQM13_14655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EQM13_14660 PF00364 Biotin-requiring enzyme EQM13_14660 PF02779 Transketolase, pyrimidine binding domain EQM13_14660 PF02780 Transketolase, C-terminal domain EQM13_14665 PF00676 Dehydrogenase E1 component EQM13_14680 PF07663 Sorbitol phosphotransferase enzyme II C-terminus EQM13_14680 PF03612 Sorbitol phosphotransferase enzyme II N-terminus EQM13_14685 PF03608 PTS system enzyme II sorbitol-specific factor EQM13_14690 PF06923 Glucitol operon activator protein (GutM) EQM13_14695 PF04198 Putative sugar-binding domain EQM13_14715 PF13411 MerR HTH family regulatory protein EQM13_14715 PF06445 GyrI-like small molecule binding domain EQM13_14725 PF03477 ATP cone domain EQM13_14725 PF02867 Ribonucleotide reductase, barrel domain EQM13_14725 PF00317 Ribonucleotide reductase, all-alpha domain EQM13_14755 PF03167 Uracil DNA glycosylase superfamily EQM13_14760 PF03167 Uracil DNA glycosylase superfamily EQM13_14765 PF01336 OB-fold nucleic acid binding domain EQM13_14765 PF00152 tRNA synthetases class II (D, K and N) EQM13_14770 PF01272 Transcription elongation factor, GreA/GreB, C-term EQM13_14770 PF03449 Transcription elongation factor, N-terminal EQM13_14780 PF01207 Dihydrouridine synthase (Dus) EQM13_14785 PF03309 Type III pantothenate kinase EQM13_14795 PF03576 Peptidase family S58 EQM13_14800 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit EQM13_14805 PF00364 Biotin-requiring enzyme EQM13_14815 PF01039 Carboxyl transferase domain EQM13_14830 PF02310 B12 binding domain EQM13_14830 PF01642 Methylmalonyl-CoA mutase EQM13_14835 PF02310 B12 binding domain EQM13_14835 PF01642 Methylmalonyl-CoA mutase EQM13_14840 PF00004 ATPase family associated with various cellular activities (AAA) EQM13_14840 PF17862 AAA+ lid domain EQM13_14840 PF01434 Peptidase family M41 EQM13_14845 PF01171 PP-loop family EQM13_14845 PF00156 Phosphoribosyl transferase domain EQM13_14845 PF11734 TilS substrate C-terminal domain EQM13_14850 PF01171 PP-loop family EQM13_14850 PF11734 TilS substrate C-terminal domain EQM13_14855 PF03793 PASTA domain EQM13_14855 PF00069 Protein kinase domain EQM13_14880 PF00672 HAMP domain EQM13_14880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_14880 PF18698 Histidine kinase sensor domain EQM13_14880 PF00512 His Kinase A (phospho-acceptor) domain EQM13_14880 PF00989 PAS fold EQM13_14885 PF00072 Response regulator receiver domain EQM13_14885 PF00486 Transcriptional regulatory protein, C terminal EQM13_14890 PF07228 Stage II sporulation protein E (SpoIIE) EQM13_14895 PF00575 S1 RNA binding domain EQM13_14910 PF07873 YabP family EQM13_14915 PF01479 S4 domain EQM13_14920 PF00216 Bacterial DNA-binding protein EQM13_14925 PF03819 MazG nucleotide pyrophosphohydrolase domain EQM13_14925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQM13_14930 PF01943 Polysaccharide biosynthesis protein EQM13_14930 PF14667 Polysaccharide biosynthesis C-terminal domain EQM13_14935 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin EQM13_14935 PF15714 Stage V sporulation protein T C-terminal, transcription factor EQM13_14945 PF00271 Helicase conserved C-terminal domain EQM13_14945 PF03461 TRCF domain EQM13_14945 PF02559 CarD-like/TRCF domain EQM13_14945 PF17757 UvrB interaction domain EQM13_14945 PF00270 DEAD/DEAH box helicase EQM13_14950 PF01195 Peptidyl-tRNA hydrolase EQM13_14955 PF14572 Phosphoribosyl synthetase-associated domain EQM13_14955 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EQM13_14960 PF00483 Nucleotidyl transferase EQM13_14960 PF00132 Bacterial transferase hexapeptide (six repeats) EQM13_14960 PF14602 Hexapeptide repeat of succinyl-transferase EQM13_14965 PF04026 SpoVG EQM13_14970 PF00156 Phosphoribosyl transferase domain EQM13_14970 PF09182 Bacterial purine repressor, N-terminal EQM13_14975 PF01225 Mur ligase family, catalytic domain EQM13_14975 PF02875 Mur ligase family, glutamate ligase domain EQM13_14975 PF08245 Mur ligase middle domain EQM13_14980 PF03816 Cell envelope-related transcriptional attenuator domain EQM13_14985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EQM13_14985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EQM13_14990 PF00378 Enoyl-CoA hydratase/isomerase EQM13_15000 PF00342 Phosphoglucose isomerase EQM13_15020 PF00672 HAMP domain EQM13_15020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EQM13_15020 PF17202 Single cache domain 3 EQM13_15025 PF01923 Cobalamin adenosyltransferase EQM13_15030 PF02926 THUMP domain EQM13_15030 PF01170 Putative RNA methylase family UPF0020 EQM13_15035 PF01880 Desulfoferrodoxin EQM13_15040 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EQM13_15040 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EQM13_15045 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EQM13_15045 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EQM13_15050 PF01479 S4 domain EQM13_15050 PF00579 tRNA synthetases class I (W and Y) EQM13_15055 PF00188 Cysteine-rich secretory protein family EQM13_15060 PF00293 NUDIX domain EQM13_15065 PF00578 AhpC/TSA family EQM13_15080 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EQM13_15080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EQM13_15085 PF00155 Aminotransferase class I and II EQM13_15090 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EQM13_15095 PF01734 Patatin-like phospholipase EQM13_15100 PF09587 Bacterial capsule synthesis protein PGA_cap EQM13_15105 PF01244 Membrane dipeptidase (Peptidase family M19) EQM13_15120 PF00075 RNase H EQM13_15130 PF00106 short chain dehydrogenase EQM13_15135 PF01081 KDPG and KHG aldolase EQM13_15140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EQM13_15140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_15150 PF01979 Amidohydrolase family EQM13_15160 PF07702 UTRA domain EQM13_15160 PF00392 Bacterial regulatory proteins, gntR family EQM13_15165 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EQM13_15165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EQM13_15170 PF13580 SIS domain EQM13_15175 PF03610 PTS system fructose IIA component EQM13_15175 PF03830 PTS system sorbose subfamily IIB component EQM13_15180 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_15190 PF03830 PTS system sorbose subfamily IIB component EQM13_15190 PF03610 PTS system fructose IIA component EQM13_15195 PF00158 Sigma-54 interaction domain EQM13_15195 PF00874 PRD domain EQM13_15195 PF03610 PTS system fructose IIA component EQM13_15200 PF00392 Bacterial regulatory proteins, gntR family EQM13_15200 PF07702 UTRA domain EQM13_15215 PF01380 SIS domain EQM13_15220 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_15225 PF03609 PTS system sorbose-specific iic component EQM13_15230 PF03830 PTS system sorbose subfamily IIB component EQM13_15235 PF01791 DeoC/LacD family aldolase EQM13_15240 PF00834 Ribulose-phosphate 3 epimerase family EQM13_15245 PF01380 SIS domain EQM13_15255 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase EQM13_15260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_15260 PF02378 Phosphotransferase system, EIIC EQM13_15260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_15270 PF00455 DeoR C terminal sensor domain EQM13_15270 PF08220 DeoR-like helix-turn-helix domain EQM13_15275 PF04055 Radical SAM superfamily EQM13_15280 PF02901 Pyruvate formate lyase-like EQM13_15280 PF01228 Glycine radical EQM13_15305 PF00239 Resolvase, N terminal domain EQM13_15305 PF02796 Helix-turn-helix domain of resolvase EQM13_15320 PF18273 Type III R-M EcoP15I C-terminal domain EQM13_15320 PF01555 DNA methylase EQM13_15340 PF03190 Protein of unknown function, DUF255 EQM13_15345 PF03190 Protein of unknown function, DUF255 EQM13_15365 PF00005 ABC transporter EQM13_15370 PF00072 Response regulator receiver domain EQM13_15370 PF00486 Transcriptional regulatory protein, C terminal EQM13_15375 PF00672 HAMP domain EQM13_15375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_15375 PF18698 Histidine kinase sensor domain EQM13_15375 PF00512 His Kinase A (phospho-acceptor) domain EQM13_15375 PF00989 PAS fold EQM13_15380 PF07685 CobB/CobQ-like glutamine amidotransferase domain EQM13_15390 PF02417 Chromate transporter EQM13_15395 PF01501 Glycosyl transferase family 8 EQM13_15395 PF08437 Glycosyl transferase family 8 C-terminal EQM13_15410 PF02645 Uncharacterised protein, DegV family COG1307 EQM13_15420 PF01261 Xylose isomerase-like TIM barrel EQM13_15425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EQM13_15425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EQM13_15430 PF03551 Transcriptional regulator PadR-like family EQM13_15430 PF13847 Methyltransferase domain EQM13_15445 PF02525 Flavodoxin-like fold EQM13_15475 PF00664 ABC transporter transmembrane region EQM13_15475 PF00005 ABC transporter EQM13_15480 PF00005 ABC transporter EQM13_15480 PF00664 ABC transporter transmembrane region EQM13_15500 PF11700 Vacuole effluxer Atg22 like EQM13_15505 PF00665 Integrase core domain EQM13_15510 PF01695 IstB-like ATP binding protein EQM13_15520 PF00665 Integrase core domain EQM13_15520 PF02796 Helix-turn-helix domain of resolvase EQM13_15535 PF00664 ABC transporter transmembrane region EQM13_15535 PF00005 ABC transporter EQM13_15540 PF00664 ABC transporter transmembrane region EQM13_15540 PF00005 ABC transporter EQM13_15545 PF09334 tRNA synthetases class I (M) EQM13_15560 PF00005 ABC transporter EQM13_15565 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_15570 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_15575 PF00497 Bacterial extracellular solute-binding proteins, family 3 EQM13_15595 PF00005 ABC transporter EQM13_15595 PF00664 ABC transporter transmembrane region EQM13_15620 PF01208 Uroporphyrinogen decarboxylase (URO-D) EQM13_15625 PF02607 B12 binding domain EQM13_15625 PF02310 B12 binding domain EQM13_15630 PF02687 FtsX-like permease family EQM13_15630 PF12704 MacB-like periplasmic core domain EQM13_15635 PF00005 ABC transporter EQM13_15640 PF18698 Histidine kinase sensor domain EQM13_15640 PF00512 His Kinase A (phospho-acceptor) domain EQM13_15640 PF00989 PAS fold EQM13_15640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_15640 PF00672 HAMP domain EQM13_15645 PF00486 Transcriptional regulatory protein, C terminal EQM13_15645 PF00072 Response regulator receiver domain EQM13_15655 PF01209 ubiE/COQ5 methyltransferase family EQM13_15675 PF14748 Pyrroline-5-carboxylate reductase dimerisation EQM13_15675 PF03807 NADP oxidoreductase coenzyme F420-dependent EQM13_15680 PF00557 Metallopeptidase family M24 EQM13_15680 PF01321 Creatinase/Prolidase N-terminal domain EQM13_15690 PF08281 Sigma-70, region 4 EQM13_15690 PF04542 Sigma-70 region 2 EQM13_15695 PF01037 Lrp/AsnC ligand binding domain EQM13_15710 PF00005 ABC transporter EQM13_15720 PF05175 Methyltransferase small domain EQM13_15720 PF08468 Methyltransferase small domain N-terminal EQM13_15740 PF00440 Bacterial regulatory proteins, tetR family EQM13_15795 PF03932 CutC family EQM13_15805 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQM13_15805 PF02378 Phosphotransferase system, EIIC EQM13_15805 PF00367 phosphotransferase system, EIIB EQM13_15815 PF01695 IstB-like ATP binding protein EQM13_15820 PF02378 Phosphotransferase system, EIIC EQM13_15820 PF00367 phosphotransferase system, EIIB EQM13_15825 PF03123 CAT RNA binding domain EQM13_15825 PF00874 PRD domain EQM13_15830 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EQM13_15830 PF00367 phosphotransferase system, EIIB EQM13_15830 PF02378 Phosphotransferase system, EIIC EQM13_15840 PF00005 ABC transporter EQM13_15850 PF00583 Acetyltransferase (GNAT) family EQM13_15860 PF12697 Alpha/beta hydrolase family EQM13_15885 PF00132 Bacterial transferase hexapeptide (six repeats) EQM13_15895 PF07690 Major Facilitator Superfamily EQM13_15900 PF01381 Helix-turn-helix EQM13_15955 PF00579 tRNA synthetases class I (W and Y) EQM13_15955 PF01479 S4 domain EQM13_15960 PF01381 Helix-turn-helix EQM13_15965 PF13732 Domain of unknown function (DUF4162) EQM13_15965 PF00005 ABC transporter EQM13_15980 PF00005 ABC transporter EQM13_16000 PF02796 Helix-turn-helix domain of resolvase EQM13_16000 PF00239 Resolvase, N terminal domain EQM13_16040 PF10026 Predicted Zn-dependent protease (DUF2268) EQM13_16045 PF13411 MerR HTH family regulatory protein EQM13_16045 PF07739 TipAS antibiotic-recognition domain EQM13_16055 PF00308 Bacterial dnaA protein EQM13_16055 PF08299 Bacterial dnaA protein helix-turn-helix EQM13_16060 PF00665 Integrase core domain EQM13_16080 PF18766 SWI2/SNF2 ATPase EQM13_16080 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EQM13_16080 PF11867 Domain of unknown function (DUF3387) EQM13_16090 PF01420 Type I restriction modification DNA specificity domain EQM13_16095 PF02384 N-6 DNA Methylase EQM13_16105 PF00145 C-5 cytosine-specific DNA methylase EQM13_16110 PF09564 NgoBV restriction endonuclease EQM13_16155 PF00476 DNA polymerase family A EQM13_16155 PF01612 3'-5' exonuclease EQM13_16155 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EQM13_16155 PF01367 5'-3' exonuclease, C-terminal SAM fold EQM13_16210 PF02773 S-adenosylmethionine synthetase, C-terminal domain EQM13_16210 PF00438 S-adenosylmethionine synthetase, N-terminal domain EQM13_16210 PF02772 S-adenosylmethionine synthetase, central domain EQM13_16215 PF01555 DNA methylase EQM13_16220 PF00145 C-5 cytosine-specific DNA methylase EQM13_16255 PF03354 Phage Terminase EQM13_16265 PF04860 Phage portal protein EQM13_16270 PF00574 Clp protease EQM13_16340 PF05105 Bacteriophage holin family EQM13_16355 PF07508 Recombinase EQM13_16355 PF00239 Resolvase, N terminal domain EQM13_16360 PF00239 Resolvase, N terminal domain EQM13_16360 PF02796 Helix-turn-helix domain of resolvase EQM13_16370 PF00665 Integrase core domain EQM13_16370 PF13333 Integrase core domain EQM13_16375 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EQM13_16405 PF02384 N-6 DNA Methylase EQM13_16415 PF01938 TRAM domain EQM13_16415 PF05958 tRNA (Uracil-5-)-methyltransferase EQM13_16425 PF02824 TGS domain EQM13_16425 PF04607 Region found in RelA / SpoT proteins EQM13_16425 PF13291 ACT domain EQM13_16435 PF10117 McrBC 5-methylcytosine restriction system component EQM13_16440 PF12102 Domain of unknown function (DUF3578) EQM13_16440 PF07728 AAA domain (dynein-related subfamily) EQM13_16445 PF02086 D12 class N6 adenine-specific DNA methyltransferase EQM13_16455 PF13307 Helicase C-terminal domain EQM13_16455 PF04851 Type III restriction enzyme, res subunit EQM13_16460 PF02073 Thermophilic metalloprotease (M29) EQM13_16465 PF04055 Radical SAM superfamily EQM13_16465 PF02310 B12 binding domain EQM13_16475 PF13580 SIS domain EQM13_16490 PF03613 PTS system mannose/fructose/sorbose family IID component EQM13_16495 PF03609 PTS system sorbose-specific iic component EQM13_16500 PF03830 PTS system sorbose subfamily IIB component EQM13_16500 PF03610 PTS system fructose IIA component EQM13_16515 PF00874 PRD domain EQM13_16515 PF03610 PTS system fructose IIA component EQM13_16515 PF00158 Sigma-54 interaction domain EQM13_16520 PF07155 ECF-type riboflavin transporter, S component EQM13_16525 PF00563 EAL domain EQM13_16525 PF00498 FHA domain EQM13_16525 PF00990 Diguanylate cyclase, GGDEF domain EQM13_16530 PF05857 TraX protein EQM13_16545 PF00266 Aminotransferase class-V EQM13_16550 PF13686 DsrE/DsrF/DrsH-like family EQM13_16555 PF00291 Pyridoxal-phosphate dependent enzyme EQM13_16560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_16560 PF00005 ABC transporter EQM13_16565 PF00005 ABC transporter EQM13_16565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_16570 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_16570 PF12911 N-terminal TM domain of oligopeptide transport permease C EQM13_16575 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_16585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_16605 PF00005 ABC transporter EQM13_16610 PF00392 Bacterial regulatory proteins, gntR family EQM13_16615 PF02632 BioY family EQM13_16620 PF00478 IMP dehydrogenase / GMP reductase domain EQM13_16620 PF00571 CBS domain EQM13_16630 PF03099 Biotin/lipoate A/B protein ligase family EQM13_16630 PF08279 HTH domain EQM13_16630 PF02237 Biotin protein ligase C terminal domain EQM13_16640 PF03424 Carbohydrate binding domain (family 17/28) EQM13_16640 PF00150 Cellulase (glycosyl hydrolase family 5) EQM13_16640 PF00395 S-layer homology domain EQM13_16660 PF00005 ABC transporter EQM13_16670 PF00395 S-layer homology domain EQM13_16670 PF00963 Cohesin domain EQM13_16695 PF07726 ATPase family associated with various cellular activities (AAA) EQM13_16695 PF17863 AAA lid domain EQM13_16715 PF04055 Radical SAM superfamily EQM13_16720 PF13597 Anaerobic ribonucleoside-triphosphate reductase EQM13_16720 PF03477 ATP cone domain EQM13_16760 PF01926 50S ribosome-binding GTPase EQM13_16760 PF12631 MnmE helical domain EQM13_16760 PF10396 GTP-binding protein TrmE N-terminus EQM13_16765 PF00574 Clp protease EQM13_16770 PF00392 Bacterial regulatory proteins, gntR family EQM13_16770 PF07729 FCD domain EQM13_16780 PF13520 Amino acid permease EQM13_16795 PF00005 ABC transporter EQM13_16795 PF09383 NIL domain EQM13_16805 PF00005 ABC transporter EQM13_16830 PF00005 ABC transporter EQM13_16835 PF00005 ABC transporter EQM13_16835 PF00664 ABC transporter transmembrane region EQM13_16845 PF00664 ABC transporter transmembrane region EQM13_16845 PF00005 ABC transporter EQM13_16855 PF00005 ABC transporter EQM13_16860 PF00005 ABC transporter EQM13_16875 PF00919 Uncharacterized protein family UPF0004 EQM13_16875 PF04055 Radical SAM superfamily EQM13_16875 PF01938 TRAM domain EQM13_16895 PF01070 FMN-dependent dehydrogenase EQM13_16900 PF02245 Methylpurine-DNA glycosylase (MPG) EQM13_16915 PF01965 DJ-1/PfpI family EQM13_16920 PF17126 RsmF rRNA methyltransferase first C-terminal domain EQM13_16920 PF01189 16S rRNA methyltransferase RsmB/F EQM13_16920 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF EQM13_16930 PF00171 Aldehyde dehydrogenase family EQM13_16950 PF03612 Sorbitol phosphotransferase enzyme II N-terminus EQM13_16950 PF07663 Sorbitol phosphotransferase enzyme II C-terminus EQM13_16955 PF02371 Transposase IS116/IS110/IS902 family EQM13_16955 PF01548 Transposase EQM13_16960 PF03608 PTS system enzyme II sorbitol-specific factor EQM13_16975 PF00106 short chain dehydrogenase EQM13_16985 PF00005 ABC transporter EQM13_16995 PF01869 BadF/BadG/BcrA/BcrD ATPase family EQM13_17000 PF05257 CHAP domain EQM13_17000 PF01476 LysM domain EQM13_17010 PF03553 Na+/H+ antiporter family EQM13_17015 PF04055 Radical SAM superfamily EQM13_17015 PF16199 Radical_SAM C-terminal domain EQM13_17025 PF00107 Zinc-binding dehydrogenase EQM13_17025 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_17030 PF00465 Iron-containing alcohol dehydrogenase EQM13_17045 PF03773 Predicted permease EQM13_17050 PF07683 Cobalamin synthesis protein cobW C-terminal domain EQM13_17050 PF02492 CobW/HypB/UreG, nucleotide-binding domain EQM13_17060 PF00950 ABC 3 transport family EQM13_17065 PF00005 ABC transporter EQM13_17070 PF01297 Zinc-uptake complex component A periplasmic EQM13_17075 PF00005 ABC transporter EQM13_17090 PF00271 Helicase conserved C-terminal domain EQM13_17090 PF00270 DEAD/DEAH box helicase EQM13_17095 PF04748 Divergent polysaccharide deacetylase EQM13_17125 PF04542 Sigma-70 region 2 EQM13_17125 PF08281 Sigma-70, region 4 EQM13_17135 PF00665 Integrase core domain EQM13_17135 PF02796 Helix-turn-helix domain of resolvase EQM13_17145 PF04073 Aminoacyl-tRNA editing domain EQM13_17150 PF01131 DNA topoisomerase EQM13_17150 PF01751 Toprim domain EQM13_17165 PF06782 Uncharacterised protein family (UPF0236) EQM13_17205 PF00395 S-layer homology domain EQM13_17205 PF00150 Cellulase (glycosyl hydrolase family 5) EQM13_17205 PF03424 Carbohydrate binding domain (family 17/28) EQM13_17235 PF04542 Sigma-70 region 2 EQM13_17235 PF08281 Sigma-70, region 4 EQM13_17245 PF01569 PAP2 superfamily EQM13_17250 PF09335 SNARE associated Golgi protein EQM13_17255 PF00486 Transcriptional regulatory protein, C terminal EQM13_17255 PF00072 Response regulator receiver domain EQM13_17270 PF03814 Potassium-transporting ATPase A subunit EQM13_17270 PF03814 Potassium-transporting ATPase A subunit EQM13_17300 PF07690 Major Facilitator Superfamily EQM13_17320 PF00005 ABC transporter EQM13_17325 PF16736 Single Cache-like EQM13_17325 PF00512 His Kinase A (phospho-acceptor) domain EQM13_17325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_17325 PF00989 PAS fold EQM13_17330 PF00072 Response regulator receiver domain EQM13_17330 PF00486 Transcriptional regulatory protein, C terminal EQM13_17350 PF00512 His Kinase A (phospho-acceptor) domain EQM13_17350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_17350 PF00672 HAMP domain EQM13_17355 PF00486 Transcriptional regulatory protein, C terminal EQM13_17355 PF00072 Response regulator receiver domain EQM13_17360 PF13361 UvrD-like helicase C-terminal domain EQM13_17360 PF00580 UvrD/REP helicase N-terminal domain EQM13_17375 PF01909 Nucleotidyltransferase domain EQM13_17375 PF13427 Domain of unknown function (DUF4111) EQM13_17385 PF02590 Predicted SPOUT methyltransferase EQM13_17425 PF07992 Pyridine nucleotide-disulphide oxidoreductase EQM13_17425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EQM13_17430 PF13302 Acetyltransferase (GNAT) domain EQM13_17430 PF13673 Acetyltransferase (GNAT) domain EQM13_17430 PF00958 GMP synthase C terminal domain EQM13_17430 PF00117 Glutamine amidotransferase class-I EQM13_17430 PF03352 Methyladenine glycosylase EQM13_17440 PF03063 Prismane/CO dehydrogenase family EQM13_17460 PF00881 Nitroreductase family EQM13_17470 PF00005 ABC transporter EQM13_17470 PF12848 ABC transporter EQM13_17475 PF13677 Membrane MotB of proton-channel complex MotA/MotB EQM13_17475 PF00691 OmpA family EQM13_17480 PF01618 MotA/TolQ/ExbB proton channel family EQM13_17485 PF12848 ABC transporter EQM13_17485 PF00005 ABC transporter EQM13_17490 PF03576 Peptidase family S58 EQM13_17495 PF00107 Zinc-binding dehydrogenase EQM13_17495 PF08240 Alcohol dehydrogenase GroES-like domain EQM13_17500 PF00294 pfkB family carbohydrate kinase EQM13_17505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_17510 PF08279 HTH domain EQM13_17510 PF05043 Mga helix-turn-helix domain EQM13_17510 PF00874 PRD domain EQM13_17510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_17510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_17515 PF02378 Phosphotransferase system, EIIC EQM13_17515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_17520 PF02371 Transposase IS116/IS110/IS902 family EQM13_17520 PF01548 Transposase EQM13_17530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EQM13_17535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EQM13_17540 PF03611 PTS system sugar-specific permease component EQM13_17545 PF13580 SIS domain EQM13_17550 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EQM13_17555 PF00270 DEAD/DEAH box helicase EQM13_17555 PF00570 HRDC domain EQM13_17555 PF16124 RecQ zinc-binding EQM13_17555 PF09382 RQC domain EQM13_17555 PF00271 Helicase conserved C-terminal domain EQM13_17570 PF03099 Biotin/lipoate A/B protein ligase family EQM13_17570 PF00293 NUDIX domain EQM13_17585 PF00072 Response regulator receiver domain EQM13_17585 PF00486 Transcriptional regulatory protein, C terminal EQM13_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_17590 PF18719 ArlS sensor domain EQM13_17590 PF00512 His Kinase A (phospho-acceptor) domain EQM13_17595 PF01895 PhoU domain EQM13_17600 PF00005 ABC transporter EQM13_17605 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_17610 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_17615 PF12849 PBP superfamily domain EQM13_17620 PF00005 ABC transporter EQM13_17620 PF17912 MalK OB fold domain EQM13_17620 PF03459 TOBE domain EQM13_17625 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_17630 PF12679 ABC-2 family transporter protein EQM13_17635 PF00005 ABC transporter EQM13_17645 PF03006 Haemolysin-III related EQM13_17655 PF03372 Endonuclease/Exonuclease/phosphatase family EQM13_17660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EQM13_17670 PF01171 PP-loop family EQM13_17675 PF14489 QueF-like protein EQM13_17685 PF00588 SpoU rRNA Methylase family EQM13_17685 PF08032 RNA 2'-O ribose methyltransferase substrate binding EQM13_17690 PF00753 Metallo-beta-lactamase superfamily EQM13_17705 PF01979 Amidohydrolase family EQM13_17720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EQM13_17725 PF07969 Amidohydrolase family EQM13_17730 PF01177 Asp/Glu/Hydantoin racemase EQM13_17735 PF00557 Metallopeptidase family M24 EQM13_17735 PF01321 Creatinase/Prolidase N-terminal domain EQM13_17740 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_17740 PF12911 N-terminal TM domain of oligopeptide transport permease C EQM13_17745 PF00528 Binding-protein-dependent transport system inner membrane component EQM13_17750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_17750 PF00005 ABC transporter EQM13_17755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EQM13_17755 PF00005 ABC transporter EQM13_17760 PF00158 Sigma-54 interaction domain EQM13_17760 PF13426 PAS domain EQM13_17760 PF02954 Bacterial regulatory protein, Fis family EQM13_17780 PF02590 Predicted SPOUT methyltransferase EQM13_17785 PF01975 Survival protein SurE EQM13_17795 PF13180 PDZ domain EQM13_17800 PF00753 Metallo-beta-lactamase superfamily EQM13_17805 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EQM13_17825 PF13426 PAS domain EQM13_17825 PF00512 His Kinase A (phospho-acceptor) domain EQM13_17825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EQM13_17825 PF00672 HAMP domain EQM13_17830 PF00486 Transcriptional regulatory protein, C terminal EQM13_17830 PF00072 Response regulator receiver domain EQM13_17840 PF00690 Cation transporter/ATPase, N-terminus EQM13_17840 PF00689 Cation transporting ATPase, C-terminus EQM13_17845 PF00082 Subtilase family EQM13_17850 PF08525 Opacity-associated protein A N-terminal motif EQM13_17850 PF01476 LysM domain EQM13_17850 PF01551 Peptidase family M23 EQM13_17870 PF06866 Protein of unknown function (DUF1256) EQM13_17880 PF00781 Diacylglycerol kinase catalytic domain EQM13_17890 PF00266 Aminotransferase class-V EQM13_17895 PF13382 Adenine deaminase C-terminal domain EQM13_17895 PF01979 Amidohydrolase family EQM13_17920 PF01609 Transposase DDE domain EQM13_17925 PF13333 Integrase core domain EQM13_17925 PF13276 HTH-like domain EQM13_17925 PF00665 Integrase core domain EQM13_17930 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EQM13_17930 PF01348 Type II intron maturase EQM13_17950 PF01695 IstB-like ATP binding protein EQM13_17975 PF00005 ABC transporter EQM13_17990 PF13732 Domain of unknown function (DUF4162) EQM13_17990 PF00005 ABC transporter EQM13_17995 PF00037 4Fe-4S binding domain EQM13_17995 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EQM13_17995 PF02906 Iron only hydrogenase large subunit, C-terminal domain EQM13_17995 PF02256 Iron hydrogenase small subunit EQM13_18000 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EQM13_18000 PF00037 4Fe-4S binding domain EQM13_18000 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EQM13_18015 PF02567 Phenazine biosynthesis-like protein EQM13_18020 PF17762 HTH domain found in ParB protein EQM13_18020 PF02195 ParB-like nuclease domain EQM13_18025 PF13614 AAA domain EQM13_18030 PF17762 HTH domain found in ParB protein EQM13_18030 PF02195 ParB-like nuclease domain EQM13_18035 PF02527 rRNA small subunit methyltransferase G EQM13_18040 PF13932 GidA associated domain EQM13_18040 PF01134 Glucose inhibited division protein A EQM13_18045 PF01926 50S ribosome-binding GTPase EQM13_18045 PF12631 MnmE helical domain EQM13_18045 PF10396 GTP-binding protein TrmE N-terminus EQM13_18050 PF14804 Jag N-terminus EQM13_18050 PF01424 R3H domain EQM13_18055 PF02096 60Kd inner membrane protein EQM13_18055 PF14849 YidC periplasmic domain EQM13_18060 PF01809 Putative membrane protein insertion efficiency factor EQM13_18065 PF00825 Ribonuclease P EQM13_18070 PF00468 Ribosomal protein L34