locus-tag class description Afer_0001 PF00308 Bacterial dnaA protein Afer_0001 PF08299 Bacterial dnaA protein helix-turn-helix Afer_0001 PF11638 DnaA N-terminal domain Afer_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Afer_0002 PF02767 DNA polymerase III beta subunit, central domain Afer_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Afer_0003 PF02463 RecF/RecN/SMC N terminal domain Afer_0005 PF01751 Toprim domain Afer_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0005 PF00986 DNA gyrase B subunit, carboxyl terminus Afer_0005 PF00204 DNA gyrase B Afer_0006 PF00521 DNA gyrase/topoisomerase IV, subunit A Afer_0006 PF03989 DNA gyrase C-terminal domain, beta-propeller Afer_0008 PF00437 Type II/IV secretion system protein Afer_0023 PF01743 Poly A polymerase head domain Afer_0023 PF12627 Probable RNA and SrmB- binding site of polymerase A Afer_0023 PF13735 tRNA nucleotidyltransferase domain 2 putative Afer_0024 PF00850 Histone deacetylase domain Afer_0027 PF03023 Lipid II flippase MurJ Afer_0028 PF02645 Uncharacterised protein, DegV family COG1307 Afer_0031 PF00085 Thioredoxin Afer_0032 PF01471 Putative peptidoglycan binding domain Afer_0032 PF01520 N-acetylmuramoyl-L-alanine amidase Afer_0035 PF00561 alpha/beta hydrolase fold Afer_0037 PF01658 Myo-inositol-1-phosphate synthase Afer_0040 PF02548 Ketopantoate hydroxymethyltransferase Afer_0041 PF03796 DnaB-like helicase C terminal domain Afer_0041 PF03796 DnaB-like helicase C terminal domain Afer_0041 PF00772 DnaB-like helicase N terminal domain Afer_0041 PF00772 DnaB-like helicase N terminal domain Afer_0041 PF14528 LAGLIDADG-like domain Afer_0041 PF14528 LAGLIDADG-like domain Afer_0042 PF01281 Ribosomal protein L9, N-terminal domain Afer_0042 PF03948 Ribosomal protein L9, C-terminal domain Afer_0043 PF01084 Ribosomal protein S18 Afer_0044 PF00436 Single-strand binding protein family Afer_0045 PF01250 Ribosomal protein S6 Afer_0051 PF02754 Cysteine-rich domain Afer_0051 PF13183 4Fe-4S dicluster domain Afer_0051 PF02665 Nitrate reductase gamma subunit Afer_0052 PF00692 dUTPase Afer_0065 PF14600 Cellulose-binding domain Afer_0065 PF00150 Cellulase (glycosyl hydrolase family 5) Afer_0067 PF01527 Transposase Afer_0068 PF13276 HTH-like domain Afer_0068 PF00665 Integrase core domain Afer_0076 PF00282 Pyridoxal-dependent decarboxylase conserved domain Afer_0077 PF01230 HIT domain Afer_0078 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0078 PF14759 Reductase C-terminal Afer_0079 PF13380 CoA binding domain Afer_0080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Afer_0082 PF13393 Histidyl-tRNA synthetase Afer_0084 PF13382 Adenine deaminase C-terminal domain Afer_0084 PF01979 Amidohydrolase family Afer_0085 PF00108 Thiolase, N-terminal domain Afer_0085 PF02803 Thiolase, C-terminal domain Afer_0086 PF02885 Glycosyl transferase family, helical bundle domain Afer_0086 PF00117 Glutamine amidotransferase class-I Afer_0086 PF00591 Glycosyl transferase family, a/b domain Afer_0087 PF00069 Protein kinase domain Afer_0087 PF03793 PASTA domain Afer_0088 PF00069 Protein kinase domain Afer_0088 PF03793 PASTA domain Afer_0089 PF00905 Penicillin binding protein transpeptidase domain Afer_0094 PF00171 Aldehyde dehydrogenase family Afer_0094 PF01575 MaoC like domain Afer_0097 PF00800 Prephenate dehydratase Afer_0098 PF00731 AIR carboxylase Afer_0099 PF01969 Protein of unknown function DUF111 Afer_0100 PF07859 alpha/beta hydrolase fold Afer_0101 PF00311 Phosphoenolpyruvate carboxylase Afer_0102 PF12169 DNA polymerase III subunits gamma and tau domain III Afer_0103 PF02132 RecR protein Afer_0103 PF13662 Toprim domain Afer_0105 PF00107 Zinc-binding dehydrogenase Afer_0105 PF08240 Alcohol dehydrogenase GroES-like domain Afer_0106 PF02803 Thiolase, C-terminal domain Afer_0106 PF00108 Thiolase, N-terminal domain Afer_0107 PF08323 Starch synthase catalytic domain Afer_0107 PF00534 Glycosyl transferases group 1 Afer_0108 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Afer_0109 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Afer_0111 PF00696 Amino acid kinase family Afer_0111 PF01842 ACT domain Afer_0111 PF13840 ACT domain Afer_0112 PF01118 Semialdehyde dehydrogenase, NAD binding domain Afer_0112 PF02774 Semialdehyde dehydrogenase, dimerisation domain Afer_0113 PF00669 Bacterial flagellin N-terminal helical region Afer_0113 PF07196 Flagellin hook IN motif Afer_0113 PF00700 Bacterial flagellin C-terminal helical region Afer_0114 PF07195 Flagellar hook-associated protein 2 C-terminus Afer_0114 PF02465 Flagellar hook-associated protein 2 N-terminus Afer_0114 PF07196 Flagellin hook IN motif Afer_0119 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Afer_0119 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Afer_0120 PF00101 Ribulose bisphosphate carboxylase, small chain Afer_0129 PF13614 AAA domain Afer_0129 PF00376 MerR family regulatory protein Afer_0131 PF08406 CbbQ/NirQ/NorQ C-terminal Afer_0131 PF07728 AAA domain (dynein-related subfamily) Afer_0133 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Afer_0134 PF00460 Flagella basal body rod protein Afer_0137 PF01514 Secretory protein of YscJ/FliF family Afer_0137 PF08345 Flagellar M-ring protein C-terminal Afer_0138 PF14842 FliG N-terminal domain Afer_0138 PF14841 FliG middle domain Afer_0138 PF01706 FliG C-terminal domain Afer_0140 PF18269 T3SS EscN ATPase C-terminal domain Afer_0140 PF02874 ATP synthase alpha/beta family, beta-barrel domain Afer_0140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Afer_0142 PF01464 Transglycosylase SLT domain Afer_0142 PF01551 Peptidase family M23 Afer_0142 PF10145 Phage-related minor tail protein Afer_0144 PF03963 Flagellar hook capping protein - N-terminal region Afer_0145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Afer_0145 PF00460 Flagella basal body rod protein Afer_0145 PF07559 Flagellar basal body protein FlaE Afer_0147 PF01618 MotA/TolQ/ExbB proton channel family Afer_0148 PF13677 Membrane MotB of proton-channel complex MotA/MotB Afer_0148 PF00691 OmpA family Afer_0151 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Afer_0153 PF01527 Transposase Afer_0154 PF13333 Integrase core domain Afer_0154 PF00665 Integrase core domain Afer_0154 PF13276 HTH-like domain Afer_0155 PF00813 FliP family Afer_0156 PF01313 Bacterial export proteins, family 3 Afer_0158 PF01312 FlhB HrpN YscU SpaS Family Afer_0159 PF00771 FHIPEP family Afer_0162 PF00581 Rhodanese-like domain Afer_0163 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0164 PF04055 Radical SAM superfamily Afer_0165 PF00834 Ribulose-phosphate 3 epimerase family Afer_0166 PF02780 Transketolase, C-terminal domain Afer_0166 PF00456 Transketolase, thiamine diphosphate binding domain Afer_0166 PF02779 Transketolase, pyrimidine binding domain Afer_0167 PF00485 Phosphoribulokinase / Uridine kinase family Afer_0168 PF02308 MgtC family Afer_0169 PF00356 Bacterial regulatory proteins, lacI family Afer_0170 PF01229 Glycosyl hydrolases family 39 Afer_0171 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Afer_0172 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0173 PF12911 N-terminal TM domain of oligopeptide transport permease C Afer_0173 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0174 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Afer_0174 PF00005 ABC transporter Afer_0175 PF00005 ABC transporter Afer_0175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Afer_0176 PF03466 LysR substrate binding domain Afer_0176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Afer_0177 PF00274 Fructose-bisphosphate aldolase class-I Afer_0180 PF00196 Bacterial regulatory proteins, luxR family Afer_0180 PF00072 Response regulator receiver domain Afer_0181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0181 PF07730 Histidine kinase Afer_0183 PF11574 Protein of unknown function (DUF3235) Afer_0183 PF06737 Transglycosylase-like domain Afer_0185 PF01738 Dienelactone hydrolase family Afer_0188 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Afer_0190 PF02403 Seryl-tRNA synthetase N-terminal domain Afer_0190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Afer_0191 PF00005 ABC transporter Afer_0191 PF13732 Domain of unknown function (DUF4162) Afer_0194 PF02617 ATP-dependent Clp protease adaptor protein ClpS Afer_0197 PF08240 Alcohol dehydrogenase GroES-like domain Afer_0197 PF00107 Zinc-binding dehydrogenase Afer_0198 PF01266 FAD dependent oxidoreductase Afer_0200 PF00486 Transcriptional regulatory protein, C terminal Afer_0200 PF00072 Response regulator receiver domain Afer_0201 PF00512 His Kinase A (phospho-acceptor) domain Afer_0201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0208 PF00460 Flagella basal body rod protein Afer_0208 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Afer_0210 PF02623 FliW protein Afer_0211 PF02599 Global regulator protein family Afer_0212 PF01627 Hpt domain Afer_0212 PF07194 P2 response regulator binding domain Afer_0212 PF01584 CheW-like domain Afer_0212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0212 PF02895 Signal transducing histidine kinase, homodimeric domain Afer_0213 PF01584 CheW-like domain Afer_0214 PF00072 Response regulator receiver domain Afer_0214 PF01339 CheB methylesterase Afer_0215 PF03705 CheR methyltransferase, all-alpha domain Afer_0215 PF01739 CheR methyltransferase, SAM binding domain Afer_0216 PF07729 FCD domain Afer_0216 PF00392 Bacterial regulatory proteins, gntR family Afer_0217 PF00072 Response regulator receiver domain Afer_0220 PF00535 Glycosyl transferase family 2 Afer_0222 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Afer_0222 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Afer_0225 PF01202 Shikimate kinase Afer_0230 PF02632 BioY family Afer_0231 PF01039 Carboxyl transferase domain Afer_0232 PF01425 Amidase Afer_0234 PF01883 Iron-sulfur cluster assembly protein Afer_0234 PF10609 NUBPL iron-transfer P-loop NTPase Afer_0238 PF02374 Anion-transporting ATPase Afer_0240 PF01521 Iron-sulphur cluster biosynthesis Afer_0241 PF00486 Transcriptional regulatory protein, C terminal Afer_0242 PF03951 Glutamine synthetase, beta-Grasp domain Afer_0242 PF00120 Glutamine synthetase, catalytic domain Afer_0243 PF00120 Glutamine synthetase, catalytic domain Afer_0243 PF03951 Glutamine synthetase, beta-Grasp domain Afer_0246 PF02540 NAD synthase Afer_0246 PF00795 Carbon-nitrogen hydrolase Afer_0248 PF03979 Sigma-70 factor, region 1.1 Afer_0248 PF00140 Sigma-70 factor, region 1.2 Afer_0248 PF04545 Sigma-70, region 4 Afer_0248 PF04542 Sigma-70 region 2 Afer_0248 PF04539 Sigma-70 region 3 Afer_0249 PF01488 Shikimate / quinate 5-dehydrogenase Afer_0249 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Afer_0249 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Afer_0250 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Afer_0250 PF03900 Porphobilinogen deaminase, C-terminal domain Afer_0252 PF00490 Delta-aminolevulinic acid dehydratase Afer_0253 PF00202 Aminotransferase class-III Afer_0254 PF00654 Voltage gated chloride channel Afer_0255 PF00378 Enoyl-CoA hydratase/isomerase Afer_0261 PF02803 Thiolase, C-terminal domain Afer_0261 PF00108 Thiolase, N-terminal domain Afer_0262 PF00578 AhpC/TSA family Afer_0264 PF02585 GlcNAc-PI de-N-acetylase Afer_0265 PF00107 Zinc-binding dehydrogenase Afer_0265 PF08240 Alcohol dehydrogenase GroES-like domain Afer_0266 PF00248 Aldo/keto reductase family Afer_0269 PF00291 Pyridoxal-phosphate dependent enzyme Afer_0270 PF00005 ABC transporter Afer_0270 PF00664 ABC transporter transmembrane region Afer_0271 PF00881 Nitroreductase family Afer_0272 PF05088 Bacterial NAD-glutamate dehydrogenase Afer_0273 PF00491 Arginase family Afer_0277 PF13276 HTH-like domain Afer_0277 PF00665 Integrase core domain Afer_0278 PF01527 Transposase Afer_0284 PF12805 FUSC-like inner membrane protein yccS Afer_0285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Afer_0285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Afer_0286 PF00271 Helicase conserved C-terminal domain Afer_0286 PF00270 DEAD/DEAH box helicase Afer_0289 PF00378 Enoyl-CoA hydratase/isomerase Afer_0291 PF00690 Cation transporter/ATPase, N-terminus Afer_0291 PF00689 Cation transporting ATPase, C-terminus Afer_0292 PF00582 Universal stress protein family Afer_0293 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_0293 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0294 PF01475 Ferric uptake regulator family Afer_0295 PF00141 Peroxidase Afer_0296 PF01906 Putative heavy-metal-binding Afer_0297 PF05977 Transmembrane secretion effector Afer_0298 PF00877 NlpC/P60 family Afer_0301 PF00665 Integrase core domain Afer_0301 PF13276 HTH-like domain Afer_0301 PF13333 Integrase core domain Afer_0302 PF01527 Transposase Afer_0305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_0305 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_0305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_0306 PF01406 tRNA synthetases class I (C) catalytic domain Afer_0306 PF09190 DALR domain Afer_0307 PF08264 Anticodon-binding domain of tRNA Afer_0307 PF00133 tRNA synthetases class I (I, L, M and V) Afer_0308 PF01566 Natural resistance-associated macrophage protein Afer_0309 PF01022 Bacterial regulatory protein, arsR family Afer_0311 PF01078 Magnesium chelatase, subunit ChlI Afer_0311 PF17863 AAA lid domain Afer_0312 PF02910 Fumarate reductase flavoprotein C-term Afer_0312 PF00890 FAD binding domain Afer_0313 PF13085 2Fe-2S iron-sulfur cluster binding domain Afer_0317 PF02467 Transcription factor WhiB Afer_0318 PF02310 B12 binding domain Afer_0319 PF00549 CoA-ligase Afer_0319 PF08442 ATP-grasp domain Afer_0320 PF00549 CoA-ligase Afer_0320 PF02629 CoA binding domain Afer_0321 PF00551 Formyl transferase Afer_0322 PF01808 AICARFT/IMPCHase bienzyme Afer_0322 PF02142 MGS-like domain Afer_0323 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Afer_0323 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Afer_0324 PF02219 Methylenetetrahydrofolate reductase Afer_0325 PF00083 Sugar (and other) transporter Afer_0328 PF02467 Transcription factor WhiB Afer_0329 PF02971 Formiminotransferase domain Afer_0329 PF07837 Formiminotransferase domain, N-terminal subdomain Afer_0330 PF00440 Bacterial regulatory proteins, tetR family Afer_0331 PF16363 GDP-mannose 4,6 dehydratase Afer_0332 PF00005 ABC transporter Afer_0332 PF13732 Domain of unknown function (DUF4162) Afer_0334 PF01578 Cytochrome C assembly protein Afer_0336 PF03100 CcmE Afer_0337 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Afer_0337 PF01578 Cytochrome C assembly protein Afer_0338 PF08534 Redoxin Afer_0339 PF03918 Cytochrome C biogenesis protein Afer_0340 PF00174 Oxidoreductase molybdopterin binding domain Afer_0341 PF00083 Sugar (and other) transporter Afer_0342 PF00196 Bacterial regulatory proteins, luxR family Afer_0345 PF00005 ABC transporter Afer_0347 PF01883 Iron-sulfur cluster assembly protein Afer_0347 PF10609 NUBPL iron-transfer P-loop NTPase Afer_0349 PF02374 Anion-transporting ATPase Afer_0352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0352 PF07568 Histidine kinase Afer_0352 PF12282 Signal transduction histidine kinase Afer_0353 PF01012 Electron transfer flavoprotein domain Afer_0354 PF01012 Electron transfer flavoprotein domain Afer_0354 PF00766 Electron transfer flavoprotein FAD-binding domain Afer_0355 PF09055 Nickel-containing superoxide dismutase Afer_0357 PF14748 Pyrroline-5-carboxylate reductase dimerisation Afer_0357 PF03807 NADP oxidoreductase coenzyme F420-dependent Afer_0358 PF00534 Glycosyl transferases group 1 Afer_0358 PF13439 Glycosyltransferase Family 4 Afer_0361 PF13439 Glycosyltransferase Family 4 Afer_0362 PF01494 FAD binding domain Afer_0363 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Afer_0364 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Afer_0365 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Afer_0366 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Afer_0368 PF10531 SLBB domain Afer_0368 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Afer_0368 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Afer_0369 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Afer_0369 PF00384 Molybdopterin oxidoreductase Afer_0369 PF01568 Molydopterin dinucleotide binding domain Afer_0370 PF00146 NADH dehydrogenase Afer_0371 PF12838 4Fe-4S dicluster domain Afer_0372 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Afer_0373 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Afer_0374 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Afer_0374 PF00361 Proton-conducting membrane transporter Afer_0375 PF00361 Proton-conducting membrane transporter Afer_0376 PF00361 Proton-conducting membrane transporter Afer_0378 PF01336 OB-fold nucleic acid binding domain Afer_0378 PF16995 Transmembrane region of lysyl-tRNA synthetase Afer_0378 PF00152 tRNA synthetases class II (D, K and N) Afer_0378 PF09924 Uncharacterised conserved protein (DUF2156) Afer_0379 PF04461 Protein of unknown function (DUF520) Afer_0381 PF00730 HhH-GPD superfamily base excision DNA repair protein Afer_0381 PF06029 AlkA N-terminal domain Afer_0381 PF12833 Helix-turn-helix domain Afer_0381 PF02805 Metal binding domain of Ada Afer_0382 PF00583 Acetyltransferase (GNAT) family Afer_0383 PF00471 Ribosomal protein L33 Afer_0385 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Afer_0386 PF00467 KOW motif Afer_0386 PF02357 Transcription termination factor nusG Afer_0387 PF03946 Ribosomal protein L11, N-terminal domain Afer_0387 PF00298 Ribosomal protein L11, RNA binding domain Afer_0388 PF00687 Ribosomal protein L1p/L10e family Afer_0389 PF00466 Ribosomal protein L10 Afer_0390 PF00542 Ribosomal protein L7/L12 C-terminal domain Afer_0390 PF16320 Ribosomal protein L7/L12 dimerisation domain Afer_0391 PF10385 RNA polymerase beta subunit external 1 domain Afer_0391 PF00562 RNA polymerase Rpb2, domain 6 Afer_0391 PF04563 RNA polymerase beta subunit Afer_0391 PF04560 RNA polymerase Rpb2, domain 7 Afer_0391 PF04561 RNA polymerase Rpb2, domain 2 Afer_0391 PF04565 RNA polymerase Rpb2, domain 3 Afer_0392 PF05000 RNA polymerase Rpb1, domain 4 Afer_0392 PF00623 RNA polymerase Rpb1, domain 2 Afer_0392 PF04997 RNA polymerase Rpb1, domain 1 Afer_0392 PF04998 RNA polymerase Rpb1, domain 5 Afer_0392 PF04983 RNA polymerase Rpb1, domain 3 Afer_0393 PF00164 Ribosomal protein S12/S23 Afer_0394 PF00177 Ribosomal protein S7p/S5e Afer_0395 PF03144 Elongation factor Tu domain 2 Afer_0395 PF00009 Elongation factor Tu GTP binding domain Afer_0395 PF03764 Elongation factor G, domain IV Afer_0395 PF14492 Elongation Factor G, domain II Afer_0395 PF00679 Elongation factor G C-terminus Afer_0396 PF00009 Elongation factor Tu GTP binding domain Afer_0396 PF03144 Elongation factor Tu domain 2 Afer_0396 PF03143 Elongation factor Tu C-terminal domain Afer_0397 PF00338 Ribosomal protein S10p/S20e Afer_0398 PF00297 Ribosomal protein L3 Afer_0399 PF00573 Ribosomal protein L4/L1 family Afer_0400 PF00276 Ribosomal protein L23 Afer_0401 PF00181 Ribosomal Proteins L2, RNA binding domain Afer_0401 PF03947 Ribosomal Proteins L2, C-terminal domain Afer_0402 PF00203 Ribosomal protein S19 Afer_0403 PF00237 Ribosomal protein L22p/L17e Afer_0404 PF00189 Ribosomal protein S3, C-terminal domain Afer_0404 PF07650 KH domain Afer_0405 PF00252 Ribosomal protein L16p/L10e Afer_0406 PF00831 Ribosomal L29 protein Afer_0407 PF00366 Ribosomal protein S17 Afer_0408 PF00238 Ribosomal protein L14p/L23e Afer_0409 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Afer_0409 PF00467 KOW motif Afer_0410 PF00673 ribosomal L5P family C-terminus Afer_0410 PF00281 Ribosomal protein L5 Afer_0411 PF00253 Ribosomal protein S14p/S29e Afer_0412 PF00410 Ribosomal protein S8 Afer_0413 PF00347 Ribosomal protein L6 Afer_0414 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Afer_0415 PF00333 Ribosomal protein S5, N-terminal domain Afer_0415 PF03719 Ribosomal protein S5, C-terminal domain Afer_0416 PF00327 Ribosomal protein L30p/L7e Afer_0417 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Afer_0418 PF00344 SecY translocase Afer_0419 PF05191 Adenylate kinase, active site lid Afer_0420 PF00557 Metallopeptidase family M24 Afer_0421 PF01176 Translation initiation factor 1A / IF-1 Afer_0422 PF00444 Ribosomal protein L36 Afer_0423 PF00416 Ribosomal protein S13/S18 Afer_0424 PF00411 Ribosomal protein S11 Afer_0425 PF00163 Ribosomal protein S4/S9 N-terminal domain Afer_0425 PF01479 S4 domain Afer_0426 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Afer_0426 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Afer_0426 PF01000 RNA polymerase Rpb3/RpoA insert domain Afer_0427 PF01196 Ribosomal protein L17 Afer_0428 PF01416 tRNA pseudouridine synthase Afer_0429 PF00572 Ribosomal protein L13 Afer_0430 PF00380 Ribosomal protein S9/S16 Afer_0431 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Afer_0431 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Afer_0431 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Afer_0431 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Afer_0432 PF01380 SIS domain Afer_0434 PF03466 LysR substrate binding domain Afer_0434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Afer_0435 PF01648 4'-phosphopantetheinyl transferase superfamily Afer_0436 PF01256 Carbohydrate kinase Afer_0436 PF03853 YjeF-related protein N-terminus Afer_0437 PF01168 Alanine racemase, N-terminal domain Afer_0437 PF00842 Alanine racemase, C-terminal domain Afer_0438 PF03167 Uracil DNA glycosylase superfamily Afer_0439 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Afer_0441 PF00583 Acetyltransferase (GNAT) family Afer_0442 PF00814 Glycoprotease family Afer_0443 PF00166 Chaperonin 10 Kd subunit Afer_0444 PF00118 TCP-1/cpn60 chaperonin family Afer_0446 PF01527 Transposase Afer_0447 PF00665 Integrase core domain Afer_0447 PF13276 HTH-like domain Afer_0453 PF00293 NUDIX domain Afer_0455 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Afer_0457 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Afer_0459 PF00478 IMP dehydrogenase / GMP reductase domain Afer_0460 PF00117 Glutamine amidotransferase class-I Afer_0460 PF02540 NAD synthase Afer_0460 PF00958 GMP synthase C terminal domain Afer_0461 PF00580 UvrD/REP helicase N-terminal domain Afer_0461 PF13361 UvrD-like helicase C-terminal domain Afer_0464 PF00535 Glycosyl transferase family 2 Afer_0470 PF01593 Flavin containing amine oxidoreductase Afer_0471 PF00348 Polyprenyl synthetase Afer_0472 PF01523 Putative modulator of DNA gyrase Afer_0475 PF00571 CBS domain Afer_0475 PF03448 MgtE intracellular N domain Afer_0475 PF01769 Divalent cation transporter Afer_0476 PF01566 Natural resistance-associated macrophage protein Afer_0477 PF00398 Ribosomal RNA adenine dimethylase Afer_0478 PF02586 SOS response associated peptidase (SRAP) Afer_0479 PF02779 Transketolase, pyrimidine binding domain Afer_0479 PF02780 Transketolase, C-terminal domain Afer_0479 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Afer_0486 PF03453 MoeA N-terminal region (domain I and II) Afer_0486 PF03454 MoeA C-terminal region (domain IV) Afer_0486 PF00994 Probable molybdopterin binding domain Afer_0487 PF00483 Nucleotidyl transferase Afer_0489 PF00534 Glycosyl transferases group 1 Afer_0489 PF13439 Glycosyltransferase Family 4 Afer_0493 PF11838 ERAP1-like C-terminal domain Afer_0493 PF01433 Peptidase family M1 domain Afer_0494 PF00294 pfkB family carbohydrate kinase Afer_0495 PF00723 Glycosyl hydrolases family 15 Afer_0496 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Afer_0496 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Afer_0497 PF00480 ROK family Afer_0498 PF07690 Major Facilitator Superfamily Afer_0504 PF00005 ABC transporter Afer_0505 PF12399 Branched-chain amino acid ATP-binding cassette transporter Afer_0505 PF00005 ABC transporter Afer_0507 PF02653 Branched-chain amino acid transport system / permease component Afer_0508 PF00072 Response regulator receiver domain Afer_0508 PF12431 Transcriptional regulator Afer_0509 PF01527 Transposase Afer_0510 PF00665 Integrase core domain Afer_0510 PF13276 HTH-like domain Afer_0511 PF17203 Single cache domain 3 Afer_0511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0511 PF00989 PAS fold Afer_0511 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Afer_0519 PF13333 Integrase core domain Afer_0519 PF13276 HTH-like domain Afer_0519 PF00665 Integrase core domain Afer_0520 PF01527 Transposase Afer_0521 PF04185 Phosphoesterase family Afer_0522 PF00664 ABC transporter transmembrane region Afer_0522 PF00005 ABC transporter Afer_0523 PF00005 ABC transporter Afer_0523 PF00664 ABC transporter transmembrane region Afer_0524 PF02322 Cytochrome bd terminal oxidase subunit II Afer_0525 PF01654 Cytochrome bd terminal oxidase subunit I Afer_0526 PF08544 GHMP kinases C terminal Afer_0526 PF00288 GHMP kinases N terminal domain Afer_0527 PF00398 Ribosomal RNA adenine dimethylase Afer_0528 PF01026 TatD related DNase Afer_0529 PF08264 Anticodon-binding domain of tRNA Afer_0529 PF09334 tRNA synthetases class I (M) Afer_0530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0532 PF06071 Protein of unknown function (DUF933) Afer_0532 PF01926 50S ribosome-binding GTPase Afer_0533 PF12002 MgsA AAA+ ATPase C terminal Afer_0533 PF16193 AAA C-terminal domain Afer_0533 PF00004 ATPase family associated with various cellular activities (AAA) Afer_0534 PF01336 OB-fold nucleic acid binding domain Afer_0534 PF02938 GAD domain Afer_0534 PF00152 tRNA synthetases class II (D, K and N) Afer_0535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0537 PF02654 Cobalamin-5-phosphate synthase Afer_0538 PF03186 CobD/Cbib protein Afer_0539 PF01894 Uncharacterised protein family UPF0047 Afer_0540 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Afer_0542 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Afer_0542 PF00326 Prolyl oligopeptidase family Afer_0543 PF01458 Uncharacterized protein family (UPF0051) Afer_0550 PF01527 Transposase Afer_0557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0557 PF00672 HAMP domain Afer_0557 PF00512 His Kinase A (phospho-acceptor) domain Afer_0558 PF00486 Transcriptional regulatory protein, C terminal Afer_0558 PF00072 Response regulator receiver domain Afer_0559 PF13180 PDZ domain Afer_0560 PF00378 Enoyl-CoA hydratase/isomerase Afer_0561 PF01458 Uncharacterized protein family (UPF0051) Afer_0562 PF00355 Rieske [2Fe-2S] domain Afer_0563 PF00005 ABC transporter Afer_0564 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0564 PF14759 Reductase C-terminal Afer_0566 PF00005 ABC transporter Afer_0567 PF00266 Aminotransferase class-V Afer_0568 PF01592 NifU-like N terminal domain Afer_0572 PF02595 Glycerate kinase family Afer_0573 PF00171 Aldehyde dehydrogenase family Afer_0575 PF00202 Aminotransferase class-III Afer_0581 PF01593 Flavin containing amine oxidoreductase Afer_0582 PF01039 Carboxyl transferase domain Afer_0586 PF03176 MMPL family Afer_0587 PF00378 Enoyl-CoA hydratase/isomerase Afer_0588 PF13193 AMP-binding enzyme C-terminal domain Afer_0588 PF00501 AMP-binding enzyme Afer_0589 PF02585 GlcNAc-PI de-N-acetylase Afer_0591 PF01351 Ribonuclease HII Afer_0597 PF00561 alpha/beta hydrolase fold Afer_0597 PF00364 Biotin-requiring enzyme Afer_0598 PF02875 Mur ligase family, glutamate ligase domain Afer_0598 PF08245 Mur ligase middle domain Afer_0598 PF01225 Mur ligase family, catalytic domain Afer_0599 PF01820 D-ala D-ala ligase N-terminus Afer_0599 PF07478 D-ala D-ala ligase C-terminus Afer_0602 PF00561 alpha/beta hydrolase fold Afer_0603 PF02515 CoA-transferase family III Afer_0605 PF02254 TrkA-N domain Afer_0605 PF07885 Ion channel Afer_0608 PF07722 Peptidase C26 Afer_0609 PF13419 Haloacid dehalogenase-like hydrolase Afer_0617 PF00459 Inositol monophosphatase family Afer_0621 PF00892 EamA-like transporter family Afer_0622 PF03949 Malic enzyme, NAD binding domain Afer_0622 PF00390 Malic enzyme, N-terminal domain Afer_0624 PF02899 Phage integrase, N-terminal SAM-like domain Afer_0624 PF00589 Phage integrase family Afer_0625 PF04545 Sigma-70, region 4 Afer_0625 PF04539 Sigma-70 region 3 Afer_0625 PF04542 Sigma-70 region 2 Afer_0626 PF00318 Ribosomal protein S2 Afer_0627 PF00889 Elongation factor TS Afer_0628 PF00696 Amino acid kinase family Afer_0629 PF01765 Ribosome recycling factor Afer_0631 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Afer_0631 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Afer_0631 PF13288 DXP reductoisomerase C-terminal domain Afer_0632 PF02163 Peptidase family M50 Afer_0632 PF17820 PDZ domain Afer_0633 PF04551 GcpE protein Afer_0634 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Afer_0634 PF04073 Aminoacyl-tRNA editing domain Afer_0634 PF03129 Anticodon binding domain Afer_0635 PF02576 RimP N-terminal domain Afer_0635 PF17384 RimP C-terminal SH3 domain Afer_0636 PF08529 NusA N-terminal domain Afer_0636 PF00575 S1 RNA binding domain Afer_0636 PF13184 NusA-like KH domain Afer_0638 PF00009 Elongation factor Tu GTP binding domain Afer_0638 PF04760 Translation initiation factor IF-2, N-terminal region Afer_0638 PF11987 Translation-initiation factor 2 Afer_0639 PF02033 Ribosome-binding factor A Afer_0640 PF01509 TruB family pseudouridylate synthase (N terminal domain) Afer_0640 PF16198 tRNA pseudouridylate synthase B C-terminal domain Afer_0640 PF09142 tRNA Pseudouridine synthase II, C terminal Afer_0641 PF01687 Riboflavin kinase Afer_0641 PF06574 FAD synthetase Afer_0642 PF00312 Ribosomal protein S15 Afer_0643 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Afer_0643 PF00013 KH domain Afer_0643 PF00575 S1 RNA binding domain Afer_0643 PF01138 3' exoribonuclease family, domain 1 Afer_0644 PF00459 Inositol monophosphatase family Afer_0645 PF01113 Dihydrodipicolinate reductase, N-terminus Afer_0645 PF05173 Dihydrodipicolinate reductase, C-terminus Afer_0646 PF00701 Dihydrodipicolinate synthetase family Afer_0647 PF12706 Beta-lactamase superfamily domain Afer_0647 PF17770 Ribonuclease J C-terminal domain Afer_0647 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Afer_0648 PF17854 FtsK alpha domain Afer_0648 PF09397 Ftsk gamma domain Afer_0648 PF01580 FtsK/SpoIIIE family Afer_0649 PF00768 D-alanyl-D-alanine carboxypeptidase Afer_0650 PF00288 GHMP kinases N terminal domain Afer_0650 PF08544 GHMP kinases C terminal Afer_0651 PF01066 CDP-alcohol phosphatidyltransferase Afer_0652 PF00994 Probable molybdopterin binding domain Afer_0652 PF02464 Competence-damaged protein Afer_0652 PF18146 Damage-inducible protein CinA KH domain Afer_0653 PF00154 recA bacterial DNA recombination protein Afer_0654 PF00919 Uncharacterized protein family UPF0004 Afer_0654 PF04055 Radical SAM superfamily Afer_0655 PF13378 Enolase C-terminal domain-like Afer_0655 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Afer_0657 PF01678 Diaminopimelate epimerase Afer_0658 PF01926 50S ribosome-binding GTPase Afer_0658 PF13167 GTP-binding GTPase N-terminal Afer_0658 PF16360 GTP-binding GTPase Middle Region Afer_0660 PF00132 Bacterial transferase hexapeptide (six repeats) Afer_0660 PF14602 Hexapeptide repeat of succinyl-transferase Afer_0660 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Afer_0661 PF01546 Peptidase family M20/M25/M40 Afer_0661 PF07687 Peptidase dimerisation domain Afer_0662 PF13276 HTH-like domain Afer_0662 PF00665 Integrase core domain Afer_0663 PF01527 Transposase Afer_0664 PF00665 Integrase core domain Afer_0666 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0667 PF00005 ABC transporter Afer_0668 PF01726 LexA DNA binding domain Afer_0668 PF00717 Peptidase S24-like Afer_0669 PF03477 ATP cone domain Afer_0673 PF00665 Integrase core domain Afer_0673 PF13276 HTH-like domain Afer_0674 PF01527 Transposase Afer_0676 PF01850 PIN domain Afer_0679 PF01212 Beta-eliminating lyase Afer_0680 PF02585 GlcNAc-PI de-N-acetylase Afer_0685 PF04191 Phospholipid methyltransferase Afer_0686 PF09529 Integral membrane protein (intg_mem_TP0381) Afer_0687 PF13276 HTH-like domain Afer_0687 PF13333 Integrase core domain Afer_0687 PF00665 Integrase core domain Afer_0690 PF01527 Transposase Afer_0691 PF00665 Integrase core domain Afer_0691 PF13276 HTH-like domain Afer_0692 PF00586 AIR synthase related protein, N-terminal domain Afer_0692 PF02769 AIR synthase related protein, C-terminal domain Afer_0693 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Afer_0693 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Afer_0698 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Afer_0698 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Afer_0699 PF01266 FAD dependent oxidoreductase Afer_0702 PF00672 HAMP domain Afer_0702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0702 PF00512 His Kinase A (phospho-acceptor) domain Afer_0703 PF00072 Response regulator receiver domain Afer_0703 PF00486 Transcriptional regulatory protein, C terminal Afer_0705 PF00753 Metallo-beta-lactamase superfamily Afer_0705 PF16123 Hydroxyacylglutathione hydrolase C-terminus Afer_0707 PF02627 Carboxymuconolactone decarboxylase family Afer_0709 PF08443 RimK-like ATP-grasp domain Afer_0709 PF18030 RimK PreATP-grasp domain Afer_0711 PF02581 Thiamine monophosphate synthase Afer_0713 PF17831 Pyruvate dehydrogenase E1 component middle domain Afer_0713 PF00456 Transketolase, thiamine diphosphate binding domain Afer_0714 PF00075 RNase H Afer_0715 PF00106 short chain dehydrogenase Afer_0716 PF00248 Aldo/keto reductase family Afer_0717 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0717 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_0718 PF02817 e3 binding domain Afer_0718 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Afer_0718 PF00364 Biotin-requiring enzyme Afer_0719 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Afer_0719 PF04055 Radical SAM superfamily Afer_0720 PF01321 Creatinase/Prolidase N-terminal domain Afer_0720 PF00557 Metallopeptidase family M24 Afer_0721 PF00595 PDZ domain Afer_0722 PF01923 Cobalamin adenosyltransferase Afer_0723 PF02965 Vitamin B12 dependent methionine synthase, activation domain Afer_0723 PF02607 B12 binding domain Afer_0723 PF02310 B12 binding domain Afer_0723 PF02574 Homocysteine S-methyltransferase Afer_0723 PF00809 Pterin binding enzyme Afer_0724 PF02789 Cytosol aminopeptidase family, N-terminal domain Afer_0724 PF00883 Cytosol aminopeptidase family, catalytic domain Afer_0727 PF01329 Pterin 4 alpha carbinolamine dehydratase Afer_0728 PF00899 ThiF family Afer_0730 PF00364 Biotin-requiring enzyme Afer_0730 PF02785 Biotin carboxylase C-terminal domain Afer_0730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Afer_0730 PF00289 Biotin carboxylase, N-terminal domain Afer_0732 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_0732 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_0732 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_0733 PF00483 Nucleotidyl transferase Afer_0734 PF16363 GDP-mannose 4,6 dehydratase Afer_0735 PF04321 RmlD substrate binding domain Afer_0738 PF00483 Nucleotidyl transferase Afer_0739 PF16363 GDP-mannose 4,6 dehydratase Afer_0740 PF01996 F420-0:Gamma-glutamyl ligase Afer_0740 PF00881 Nitroreductase family Afer_0742 PF13439 Glycosyltransferase Family 4 Afer_0742 PF00534 Glycosyl transferases group 1 Afer_0744 PF00534 Glycosyl transferases group 1 Afer_0744 PF13439 Glycosyltransferase Family 4 Afer_0745 PF16363 GDP-mannose 4,6 dehydratase Afer_0746 PF00535 Glycosyl transferase family 2 Afer_0746 PF00534 Glycosyl transferases group 1 Afer_0753 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Afer_0753 PF00672 HAMP domain Afer_0753 PF17200 Single Cache domain 2 Afer_0755 PF00293 NUDIX domain Afer_0755 PF00300 Histidine phosphatase superfamily (branch 1) Afer_0759 PF09335 SNARE associated Golgi protein Afer_0760 PF02583 Metal-sensitive transcriptional repressor Afer_0761 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Afer_0761 PF05698 Bacterial trigger factor protein (TF) C-terminus Afer_0761 PF05697 Bacterial trigger factor protein (TF) Afer_0762 PF00574 Clp protease Afer_0763 PF10431 C-terminal, D2-small domain, of ClpB protein Afer_0763 PF06689 ClpX C4-type zinc finger Afer_0763 PF07724 AAA domain (Cdc48 subfamily) Afer_0765 PF00334 Nucleoside diphosphate kinase Afer_0769 PF03717 Penicillin-binding Protein dimerisation domain Afer_0769 PF00905 Penicillin binding protein transpeptidase domain Afer_0770 PF10150 Ribonuclease E/G family Afer_0771 PF00829 Ribosomal prokaryotic L21 protein Afer_0772 PF01016 Ribosomal L27 protein Afer_0773 PF01926 50S ribosome-binding GTPase Afer_0773 PF01018 GTP1/OBG Afer_0773 PF09269 Domain of unknown function (DUF1967) Afer_0774 PF00696 Amino acid kinase family Afer_0774 PF01472 PUA domain Afer_0776 PF04978 Protein of unknown function (DUF664) Afer_0777 PF00005 ABC transporter Afer_0778 PF00005 ABC transporter Afer_0778 PF12399 Branched-chain amino acid ATP-binding cassette transporter Afer_0780 PF02653 Branched-chain amino acid transport system / permease component Afer_0782 PF00171 Aldehyde dehydrogenase family Afer_0786 PF01557 Fumarylacetoacetate (FAA) hydrolase family Afer_0790 PF01467 Cytidylyltransferase-like Afer_0792 PF01474 Class-II DAHP synthetase family Afer_0796 PF00221 Aromatic amino acid lyase Afer_0798 PF13193 AMP-binding enzyme C-terminal domain Afer_0798 PF00501 AMP-binding enzyme Afer_0799 PF01903 CbiX Afer_0800 PF02570 Precorrin-8X methylmutase Afer_0802 PF10414 Sirohaem synthase dimerisation region Afer_0802 PF14824 Sirohaem biosynthesis protein central Afer_0802 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0804 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Afer_0804 PF12557 Cob(I)alamin adenosyltransferase N terminal Afer_0805 PF07685 CobB/CobQ-like glutamine amidotransferase domain Afer_0805 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Afer_0806 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0807 PF01888 CbiD Afer_0808 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0811 PF01431 Peptidase family M13 Afer_0811 PF05649 Peptidase family M13 Afer_0814 PF01494 FAD binding domain Afer_0815 PF07685 CobB/CobQ-like glutamine amidotransferase domain Afer_0815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Afer_0816 PF02514 CobN/Magnesium Chelatase Afer_0817 PF13519 von Willebrand factor type A domain Afer_0817 PF17863 AAA lid domain Afer_0817 PF07728 AAA domain (dynein-related subfamily) Afer_0818 PF03167 Uracil DNA glycosylase superfamily Afer_0820 PF13188 PAS domain Afer_0820 PF00990 Diguanylate cyclase, GGDEF domain Afer_0820 PF00563 EAL domain Afer_0820 PF03707 Bacterial signalling protein N terminal repeat Afer_0821 PF12838 4Fe-4S dicluster domain Afer_0821 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Afer_0821 PF00384 Molybdopterin oxidoreductase Afer_0821 PF01568 Molydopterin dinucleotide binding domain Afer_0821 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Afer_0823 PF00676 Dehydrogenase E1 component Afer_0824 PF02780 Transketolase, C-terminal domain Afer_0824 PF02779 Transketolase, pyrimidine binding domain Afer_0825 PF02817 e3 binding domain Afer_0825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Afer_0825 PF00364 Biotin-requiring enzyme Afer_0826 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0826 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_0827 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Afer_0827 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Afer_0829 PF01594 AI-2E family transporter Afer_0832 PF12697 Alpha/beta hydrolase family Afer_0833 PF02467 Transcription factor WhiB Afer_0834 PF02634 FdhD/NarQ family Afer_0835 PF01323 DSBA-like thioredoxin domain Afer_0840 PF03976 Polyphosphate kinase 2 (PPK2) Afer_0842 PF01209 ubiE/COQ5 methyltransferase family Afer_0843 PF00425 chorismate binding enzyme Afer_0844 PF00005 ABC transporter Afer_0844 PF17760 UvrA interaction domain Afer_0844 PF17755 UvrA DNA-binding domain Afer_0845 PF02151 UvrB/uvrC motif Afer_0845 PF08459 UvrC Helix-hairpin-helix N-terminal Afer_0845 PF01541 GIY-YIG catalytic domain Afer_0846 PF01209 ubiE/COQ5 methyltransferase family Afer_0847 PF03668 P-loop ATPase protein family Afer_0848 PF01933 Uncharacterised protein family UPF0052 Afer_0849 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Afer_0849 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Afer_0850 PF00162 Phosphoglycerate kinase Afer_0851 PF00121 Triosephosphate isomerase Afer_0852 PF03840 Preprotein translocase SecG subunit Afer_0856 PF01914 MarC family integral membrane protein Afer_0859 PF10417 C-terminal domain of 1-Cys peroxiredoxin Afer_0859 PF00578 AhpC/TSA family Afer_0860 PF00296 Luciferase-like monooxygenase Afer_0861 PF00535 Glycosyl transferase family 2 Afer_0863 PF00929 Exonuclease Afer_0864 PF00535 Glycosyl transferase family 2 Afer_0865 PF00692 dUTPase Afer_0870 PF03793 PASTA domain Afer_0870 PF00069 Protein kinase domain Afer_0871 PF03951 Glutamine synthetase, beta-Grasp domain Afer_0871 PF00120 Glutamine synthetase, catalytic domain Afer_0874 PF02896 PEP-utilising enzyme, TIM barrel domain Afer_0874 PF00391 PEP-utilising enzyme, mobile domain Afer_0874 PF05524 PEP-utilising enzyme, N-terminal Afer_0875 PF00230 Major intrinsic protein Afer_0876 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Afer_0876 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Afer_0877 PF02733 Dak1 domain Afer_0878 PF02734 DAK2 domain Afer_0879 PF00381 PTS HPr component phosphorylation site Afer_0879 PF00391 PEP-utilising enzyme, mobile domain Afer_0879 PF05524 PEP-utilising enzyme, N-terminal Afer_0879 PF03610 PTS system fructose IIA component Afer_0880 PF04324 BFD-like [2Fe-2S] binding domain Afer_0880 PF01266 FAD dependent oxidoreductase Afer_0883 PF04309 Glycerol-3-phosphate responsive antiterminator Afer_0885 PF12911 N-terminal TM domain of oligopeptide transport permease C Afer_0885 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0887 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0888 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0888 PF12911 N-terminal TM domain of oligopeptide transport permease C Afer_0890 PF00005 ABC transporter Afer_0890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Afer_0891 PF01757 Acyltransferase family Afer_0892 PF00588 SpoU rRNA Methylase family Afer_0894 PF13344 Haloacid dehalogenase-like hydrolase Afer_0894 PF18407 GCN5-related N-acetyltransferase like domain Afer_0895 PF01791 DeoC/LacD family aldolase Afer_0899 PF03641 Possible lysine decarboxylase Afer_0900 PF04055 Radical SAM superfamily Afer_0901 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Afer_0905 PF08704 tRNA methyltransferase complex GCD14 subunit Afer_0907 PF16450 Proteasomal ATPase OB C-terminal domain Afer_0907 PF00004 ATPase family associated with various cellular activities (AAA) Afer_0907 PF17758 Proteasomal ATPase OB N-terminal domain Afer_0908 PF03136 Pup-ligase protein Afer_0910 PF00227 Proteasome subunit Afer_0911 PF00227 Proteasome subunit Afer_0912 PF03136 Pup-ligase protein Afer_0913 PF10502 Signal peptidase, peptidase S26 Afer_0915 PF00579 tRNA synthetases class I (W and Y) Afer_0916 PF02416 mttA/Hcf106 family Afer_0917 PF00902 Sec-independent protein translocase protein (TatC) Afer_0918 PF08148 DSHCT (NUC185) domain Afer_0918 PF00270 DEAD/DEAH box helicase Afer_0918 PF00271 Helicase conserved C-terminal domain Afer_0919 PF02511 Thymidylate synthase complementing protein Afer_0922 PF00293 NUDIX domain Afer_0935 PF00970 Oxidoreductase FAD-binding domain Afer_0935 PF00111 2Fe-2S iron-sulfur cluster binding domain Afer_0935 PF00175 Oxidoreductase NAD-binding domain Afer_0937 PF13439 Glycosyltransferase Family 4 Afer_0937 PF00534 Glycosyl transferases group 1 Afer_0938 PF03364 Polyketide cyclase / dehydrase and lipid transport Afer_0939 PF00155 Aminotransferase class I and II Afer_0940 PF00155 Aminotransferase class I and II Afer_0940 PF00392 Bacterial regulatory proteins, gntR family Afer_0941 PF00202 Aminotransferase class-III Afer_0942 PF00171 Aldehyde dehydrogenase family Afer_0943 PF02547 Queuosine biosynthesis protein Afer_0944 PF01702 Queuine tRNA-ribosyltransferase Afer_0945 PF07549 SecD/SecF GG Motif Afer_0945 PF02355 Protein export membrane protein Afer_0946 PF02355 Protein export membrane protein Afer_0946 PF07549 SecD/SecF GG Motif Afer_0947 PF02824 TGS domain Afer_0947 PF04607 Region found in RelA / SpoT proteins Afer_0947 PF13291 ACT domain Afer_0948 PF13520 Amino acid permease Afer_0951 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Afer_0951 PF01411 tRNA synthetases class II (A) Afer_0951 PF02272 DHHA1 domain Afer_0952 PF03652 Holliday junction resolvase Afer_0954 PF08501 Shikimate dehydrogenase substrate binding domain Afer_0954 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Afer_0956 PF01098 Cell cycle protein Afer_0958 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Afer_0958 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Afer_0959 PF00890 FAD binding domain Afer_0959 PF02910 Fumarate reductase flavoprotein C-term Afer_0960 PF02445 Quinolinate synthetase A protein Afer_0962 PF01206 Sulfurtransferase TusA Afer_0966 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Afer_0966 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0968 PF13183 4Fe-4S dicluster domain Afer_0968 PF02754 Cysteine-rich domain Afer_0969 PF01012 Electron transfer flavoprotein domain Afer_0970 PF01012 Electron transfer flavoprotein domain Afer_0970 PF00766 Electron transfer flavoprotein FAD-binding domain Afer_0971 PF02665 Nitrate reductase gamma subunit Afer_0971 PF13183 4Fe-4S dicluster domain Afer_0971 PF02754 Cysteine-rich domain Afer_0973 PF01597 Glycine cleavage H-protein Afer_0974 PF01597 Glycine cleavage H-protein Afer_0976 PF13686 DsrE/DsrF/DrsH-like family Afer_0978 PF00665 Integrase core domain Afer_0978 PF13276 HTH-like domain Afer_0978 PF13333 Integrase core domain Afer_0979 PF13276 HTH-like domain Afer_0979 PF13333 Integrase core domain Afer_0979 PF00665 Integrase core domain Afer_0980 PF01527 Transposase Afer_0981 PF01527 Transposase Afer_0982 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) Afer_0983 PF01867 CRISPR associated protein Cas1 Afer_0985 PF09704 CRISPR-associated protein (Cas_Cas5) Afer_0986 PF09344 CT1975-like protein Afer_0989 PF18019 HD domain Afer_0989 PF00270 DEAD/DEAH box helicase Afer_0989 PF18395 Cas3 C-terminal domain Afer_0992 PF00005 ABC transporter Afer_0993 PF02653 Branched-chain amino acid transport system / permease component Afer_0995 PF00356 Bacterial regulatory proteins, lacI family Afer_0996 PF00294 pfkB family carbohydrate kinase Afer_0998 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Afer_0998 PF10531 SLBB domain Afer_0998 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Afer_1002 PF03099 Biotin/lipoate A/B protein ligase family Afer_1003 PF01098 Cell cycle protein Afer_1004 PF02503 Polyphosphate kinase middle domain Afer_1004 PF13090 Polyphosphate kinase C-terminal domain 2 Afer_1004 PF17941 Polyphosphate kinase C-terminal domain 1 Afer_1004 PF13089 Polyphosphate kinase N-terminal domain Afer_1006 PF02541 Ppx/GppA phosphatase family Afer_1008 PF00342 Phosphoglucose isomerase Afer_1009 PF00923 Transaldolase/Fructose-6-phosphate aldolase Afer_1010 PF00107 Zinc-binding dehydrogenase Afer_1011 PF01121 Dephospho-CoA kinase Afer_1013 PF12344 Ultra-violet resistance protein B Afer_1013 PF02151 UvrB/uvrC motif Afer_1013 PF04851 Type III restriction enzyme, res subunit Afer_1013 PF00271 Helicase conserved C-terminal domain Afer_1013 PF17757 UvrB interaction domain Afer_1014 PF00753 Metallo-beta-lactamase superfamily Afer_1018 PF16363 GDP-mannose 4,6 dehydratase Afer_1020 PF00384 Molybdopterin oxidoreductase Afer_1020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Afer_1020 PF01568 Molydopterin dinucleotide binding domain Afer_1021 PF12800 4Fe-4S binding domain Afer_1021 PF13247 4Fe-4S dicluster domain Afer_1024 PF00535 Glycosyl transferase family 2 Afer_1025 PF08471 Class II vitamin B12-dependent ribonucleotide reductase Afer_1025 PF02867 Ribonucleotide reductase, barrel domain Afer_1026 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1026 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_1027 PF13193 AMP-binding enzyme C-terminal domain Afer_1027 PF00501 AMP-binding enzyme Afer_1028 PF00440 Bacterial regulatory proteins, tetR family Afer_1029 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_1029 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_1029 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_1030 PF08608 Wyosine base formation Afer_1030 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain Afer_1031 PF01039 Carboxyl transferase domain Afer_1032 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Afer_1032 PF00289 Biotin carboxylase, N-terminal domain Afer_1032 PF02785 Biotin carboxylase C-terminal domain Afer_1032 PF00364 Biotin-requiring enzyme Afer_1034 PF00378 Enoyl-CoA hydratase/isomerase Afer_1035 PF00324 Amino acid permease Afer_1036 PF07690 Major Facilitator Superfamily Afer_1038 PF01161 Phosphatidylethanolamine-binding protein Afer_1041 PF01070 FMN-dependent dehydrogenase Afer_1051 PF13333 Integrase core domain Afer_1051 PF00665 Integrase core domain Afer_1051 PF13276 HTH-like domain Afer_1053 PF10437 Bacterial lipoate protein ligase C-terminus Afer_1053 PF03099 Biotin/lipoate A/B protein ligase family Afer_1059 PF00005 ABC transporter Afer_1060 PF00005 ABC transporter Afer_1061 PF07690 Major Facilitator Superfamily Afer_1070 PF01112 Asparaginase Afer_1075 PF00132 Bacterial transferase hexapeptide (six repeats) Afer_1076 PF00005 ABC transporter Afer_1079 PF00575 S1 RNA binding domain Afer_1080 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Afer_1080 PF00476 DNA polymerase family A Afer_1080 PF01367 5'-3' exonuclease, C-terminal SAM fold Afer_1081 PF00072 Response regulator receiver domain Afer_1081 PF03861 ANTAR domain Afer_1082 PF00753 Metallo-beta-lactamase superfamily Afer_1084 PF02913 FAD linked oxidases, C-terminal domain Afer_1084 PF01565 FAD binding domain Afer_1085 PF00698 Acyl transferase domain Afer_1086 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Afer_1086 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Afer_1089 PF00109 Beta-ketoacyl synthase, N-terminal domain Afer_1089 PF02801 Beta-ketoacyl synthase, C-terminal domain Afer_1091 PF05199 GMC oxidoreductase Afer_1091 PF00732 GMC oxidoreductase Afer_1092 PF03109 ABC1 family Afer_1093 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Afer_1093 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Afer_1094 PF00290 Tryptophan synthase alpha chain Afer_1095 PF00291 Pyridoxal-phosphate dependent enzyme Afer_1096 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Afer_1097 PF00218 Indole-3-glycerol phosphate synthase Afer_1099 PF00486 Transcriptional regulatory protein, C terminal Afer_1099 PF00072 Response regulator receiver domain Afer_1100 PF16736 Single Cache-like Afer_1100 PF00989 PAS fold Afer_1100 PF00512 His Kinase A (phospho-acceptor) domain Afer_1100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_1101 PF00563 EAL domain Afer_1101 PF00990 Diguanylate cyclase, GGDEF domain Afer_1101 PF03707 Bacterial signalling protein N terminal repeat Afer_1101 PF13188 PAS domain Afer_1102 PF01571 Aminomethyltransferase folate-binding domain Afer_1103 PF00425 chorismate binding enzyme Afer_1103 PF04715 Anthranilate synthase component I, N terminal region Afer_1104 PF01502 Phosphoribosyl-AMP cyclohydrolase Afer_1106 PF00977 Histidine biosynthesis protein Afer_1107 PF00977 Histidine biosynthesis protein Afer_1108 PF00117 Glutamine amidotransferase class-I Afer_1109 PF00475 Imidazoleglycerol-phosphate dehydratase Afer_1110 PF00155 Aminotransferase class I and II Afer_1111 PF00815 Histidinol dehydrogenase Afer_1114 PF02887 Pyruvate kinase, alpha/beta domain Afer_1114 PF00391 PEP-utilising enzyme, mobile domain Afer_1114 PF00224 Pyruvate kinase, barrel domain Afer_1118 PF02347 Glycine cleavage system P-protein Afer_1119 PF02347 Glycine cleavage system P-protein Afer_1120 PF01571 Aminomethyltransferase folate-binding domain Afer_1120 PF08669 Glycine cleavage T-protein C-terminal barrel domain Afer_1123 PF00483 Nucleotidyl transferase Afer_1124 PF01597 Glycine cleavage H-protein Afer_1125 PF16697 Inner membrane component of T3SS, cytoplasmic domain Afer_1126 PF00376 MerR family regulatory protein Afer_1128 PF02577 Bifunctional nuclease Afer_1129 PF02683 Cytochrome C biogenesis protein transmembrane region Afer_1130 PF07690 Major Facilitator Superfamily Afer_1132 PF02163 Peptidase family M50 Afer_1133 PF00589 Phage integrase family Afer_1133 PF02899 Phage integrase, N-terminal SAM-like domain Afer_1134 PF00293 NUDIX domain Afer_1135 PF00117 Glutamine amidotransferase class-I Afer_1135 PF06418 CTP synthase N-terminus Afer_1136 PF02463 RecF/RecN/SMC N terminal domain Afer_1137 PF01513 ATP-NAD kinase Afer_1138 PF01728 FtsJ-like methyltransferase Afer_1138 PF01479 S4 domain Afer_1142 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1143 PF12911 N-terminal TM domain of oligopeptide transport permease C Afer_1143 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1145 PF03816 Cell envelope-related transcriptional attenuator domain Afer_1146 PF00682 HMGL-like Afer_1147 PF00005 ABC transporter Afer_1147 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Afer_1148 PF13186 Iron-sulfur cluster-binding domain Afer_1148 PF04055 Radical SAM superfamily Afer_1149 PF13193 AMP-binding enzyme C-terminal domain Afer_1149 PF00501 AMP-binding enzyme Afer_1151 PF00501 AMP-binding enzyme Afer_1151 PF13193 AMP-binding enzyme C-terminal domain Afer_1152 PF05690 Thiazole biosynthesis protein ThiG Afer_1152 PF01266 FAD dependent oxidoreductase Afer_1153 PF02597 ThiS family Afer_1153 PF05690 Thiazole biosynthesis protein ThiG Afer_1154 PF05690 Thiazole biosynthesis protein ThiG Afer_1155 PF08543 Phosphomethylpyrimidine kinase Afer_1156 PF13188 PAS domain Afer_1156 PF03707 Bacterial signalling protein N terminal repeat Afer_1156 PF00563 EAL domain Afer_1156 PF00990 Diguanylate cyclase, GGDEF domain Afer_1159 PF03358 NADPH-dependent FMN reductase Afer_1161 PF01266 FAD dependent oxidoreductase Afer_1164 PF00403 Heavy-metal-associated domain Afer_1173 PF00486 Transcriptional regulatory protein, C terminal Afer_1173 PF00072 Response regulator receiver domain Afer_1174 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_1174 PF13493 Domain of unknown function (DUF4118) Afer_1174 PF00512 His Kinase A (phospho-acceptor) domain Afer_1174 PF02702 Osmosensitive K+ channel His kinase sensor domain Afer_1175 PF00512 His Kinase A (phospho-acceptor) domain Afer_1175 PF13493 Domain of unknown function (DUF4118) Afer_1175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_1175 PF02702 Osmosensitive K+ channel His kinase sensor domain Afer_1175 PF00582 Universal stress protein family Afer_1176 PF02669 K+-transporting ATPase, c chain Afer_1178 PF03814 Potassium-transporting ATPase A subunit Afer_1182 PF01557 Fumarylacetoacetate (FAA) hydrolase family Afer_1185 PF04542 Sigma-70 region 2 Afer_1185 PF04545 Sigma-70, region 4 Afer_1188 PF13742 OB-fold nucleic acid binding domain Afer_1188 PF02601 Exonuclease VII, large subunit Afer_1190 PF00202 Aminotransferase class-III Afer_1191 PF03707 Bacterial signalling protein N terminal repeat Afer_1191 PF13188 PAS domain Afer_1191 PF00990 Diguanylate cyclase, GGDEF domain Afer_1191 PF00563 EAL domain Afer_1192 PF00877 NlpC/P60 family Afer_1193 PF02515 CoA-transferase family III Afer_1194 PF01425 Amidase Afer_1196 PF02502 Ribose/Galactose Isomerase Afer_1197 PF10759 Protein of unknown function (DUF2587) Afer_1199 PF02082 Transcriptional regulator Afer_1201 PF00255 Glutathione peroxidase Afer_1202 PF00171 Aldehyde dehydrogenase family Afer_1206 PF00005 ABC transporter Afer_1208 PF04539 Sigma-70 region 3 Afer_1208 PF03979 Sigma-70 factor, region 1.1 Afer_1208 PF04545 Sigma-70, region 4 Afer_1208 PF04542 Sigma-70 region 2 Afer_1208 PF00140 Sigma-70 factor, region 1.2 Afer_1209 PF00849 RNA pseudouridylate synthase Afer_1210 PF01252 Signal peptidase (SPase) II Afer_1212 PF00133 tRNA synthetases class I (I, L, M and V) Afer_1212 PF08264 Anticodon-binding domain of tRNA Afer_1213 PF13520 Amino acid permease Afer_1215 PF05496 Holliday junction DNA helicase RuvB P-loop domain Afer_1215 PF05491 RuvB C-terminal winged helix domain Afer_1215 PF17864 RuvB AAA lid domain Afer_1216 PF01330 RuvA N terminal domain Afer_1216 PF07499 RuvA, C-terminal domain Afer_1217 PF02075 Crossover junction endodeoxyribonuclease RuvC Afer_1218 PF08534 Redoxin Afer_1219 PF01709 Transcriptional regulator Afer_1220 PF01174 SNO glutamine amidotransferase family Afer_1221 PF01680 SOR/SNZ family Afer_1223 PF13439 Glycosyltransferase Family 4 Afer_1226 PF14492 Elongation Factor G, domain II Afer_1226 PF00679 Elongation factor G C-terminus Afer_1226 PF03144 Elongation factor Tu domain 2 Afer_1226 PF00009 Elongation factor Tu GTP binding domain Afer_1226 PF03764 Elongation factor G, domain IV Afer_1228 PF01230 HIT domain Afer_1229 PF03129 Anticodon binding domain Afer_1229 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Afer_1229 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Afer_1230 PF01406 tRNA synthetases class I (C) catalytic domain Afer_1234 PF02678 Pirin Afer_1234 PF05726 Pirin C-terminal cupin domain Afer_1235 PF01261 Xylose isomerase-like TIM barrel Afer_1237 PF02325 YGGT family Afer_1238 PF04472 Cell division protein SepF Afer_1239 PF01168 Alanine racemase, N-terminal domain Afer_1241 PF12327 FtsZ family, C-terminal domain Afer_1241 PF00091 Tubulin/FtsZ family, GTPase domain Afer_1243 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Afer_1243 PF01565 FAD binding domain Afer_1244 PF02875 Mur ligase family, glutamate ligase domain Afer_1244 PF01225 Mur ligase family, catalytic domain Afer_1244 PF08245 Mur ligase middle domain Afer_1245 PF03033 Glycosyltransferase family 28 N-terminal domain Afer_1245 PF04101 Glycosyltransferase family 28 C-terminal domain Afer_1246 PF01098 Cell cycle protein Afer_1247 PF02875 Mur ligase family, glutamate ligase domain Afer_1247 PF08245 Mur ligase middle domain Afer_1248 PF00953 Glycosyl transferase family 4 Afer_1248 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Afer_1249 PF01225 Mur ligase family, catalytic domain Afer_1249 PF08245 Mur ligase middle domain Afer_1249 PF02875 Mur ligase family, glutamate ligase domain Afer_1250 PF00905 Penicillin binding protein transpeptidase domain Afer_1250 PF03717 Penicillin-binding Protein dimerisation domain Afer_1252 PF01795 MraW methylase family Afer_1253 PF02381 MraZ protein, putative antitoxin-like Afer_1259 PF01569 PAP2 superfamily Afer_1260 PF04539 Sigma-70 region 3 Afer_1260 PF04545 Sigma-70, region 4 Afer_1260 PF00140 Sigma-70 factor, region 1.2 Afer_1260 PF04542 Sigma-70 region 2 Afer_1261 PF01807 CHC2 zinc finger Afer_1261 PF10410 DnaB-helicase binding domain of primase Afer_1261 PF08278 DNA primase DnaG DnaB-binding Afer_1261 PF13662 Toprim domain Afer_1261 PF08275 DNA primase catalytic core, N-terminal domain Afer_1262 PF02896 PEP-utilising enzyme, TIM barrel domain Afer_1262 PF00391 PEP-utilising enzyme, mobile domain Afer_1262 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Afer_1263 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Afer_1263 PF03129 Anticodon binding domain Afer_1266 PF01255 Putative undecaprenyl diphosphate synthase Afer_1267 PF08768 Domain of unknown function (DUF1794) Afer_1268 PF07650 KH domain Afer_1268 PF01926 50S ribosome-binding GTPase Afer_1269 PF00571 CBS domain Afer_1269 PF03471 Transporter associated domain Afer_1269 PF01595 Cyclin M transmembrane N-terminal domain Afer_1270 PF02130 Uncharacterized protein family UPF0054 Afer_1271 PF02562 PhoH-like protein Afer_1277 PF00437 Type II/IV secretion system protein Afer_1285 PF13350 Tyrosine phosphatase family Afer_1286 PF00501 AMP-binding enzyme Afer_1286 PF13193 AMP-binding enzyme C-terminal domain Afer_1286 PF16177 Acetyl-coenzyme A synthetase N-terminus Afer_1287 PF01184 GPR1/FUN34/yaaH family Afer_1290 PF04055 Radical SAM superfamily Afer_1293 PF00684 DnaJ central domain Afer_1293 PF01556 DnaJ C terminal domain Afer_1293 PF00226 DnaJ domain Afer_1294 PF01628 HrcA protein C terminal domain Afer_1294 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Afer_1295 PF01649 Ribosomal protein S20 Afer_1296 PF00679 Elongation factor G C-terminus Afer_1296 PF00009 Elongation factor Tu GTP binding domain Afer_1296 PF06421 GTP-binding protein LepA C-terminus Afer_1299 PF02424 ApbE family Afer_1302 PF00875 DNA photolyase Afer_1302 PF03441 FAD binding domain of DNA photolyase Afer_1304 PF00809 Pterin binding enzyme Afer_1305 PF00085 Thioredoxin Afer_1306 PF00248 Aldo/keto reductase family Afer_1307 PF00561 alpha/beta hydrolase fold Afer_1308 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Afer_1310 PF12704 MacB-like periplasmic core domain Afer_1310 PF02687 FtsX-like permease family Afer_1310 PF00005 ABC transporter Afer_1315 PF01527 Transposase Afer_1316 PF13276 HTH-like domain Afer_1316 PF13333 Integrase core domain Afer_1316 PF00665 Integrase core domain Afer_1319 PF13333 Integrase core domain Afer_1319 PF00665 Integrase core domain Afer_1319 PF13276 HTH-like domain Afer_1320 PF01527 Transposase Afer_1322 PF08264 Anticodon-binding domain of tRNA Afer_1322 PF00133 tRNA synthetases class I (I, L, M and V) Afer_1322 PF09334 tRNA synthetases class I (M) Afer_1322 PF13603 Leucyl-tRNA synthetase, Domain 2 Afer_1326 PF07729 FCD domain Afer_1326 PF00392 Bacterial regulatory proteins, gntR family Afer_1327 PF00005 ABC transporter Afer_1327 PF17912 MalK OB fold domain Afer_1328 PF00128 Alpha amylase, catalytic domain Afer_1329 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1330 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1332 PF00356 Bacterial regulatory proteins, lacI family Afer_1335 PF00132 Bacterial transferase hexapeptide (six repeats) Afer_1336 PF00291 Pyridoxal-phosphate dependent enzyme Afer_1337 PF14815 NUDIX domain Afer_1337 PF00633 Helix-hairpin-helix motif Afer_1337 PF00730 HhH-GPD superfamily base excision DNA repair protein Afer_1339 PF07690 Major Facilitator Superfamily Afer_1343 PF00672 HAMP domain Afer_1343 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Afer_1343 PF02743 Cache domain Afer_1346 PF01039 Carboxyl transferase domain Afer_1347 PF01926 50S ribosome-binding GTPase Afer_1347 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Afer_1349 PF02401 LytB protein Afer_1350 PF01553 Acyltransferase Afer_1351 PF02224 Cytidylate kinase Afer_1352 PF01435 Peptidase family M48 Afer_1354 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Afer_1355 PF07736 Chorismate mutase type I Afer_1356 PF00849 RNA pseudouridylate synthase Afer_1356 PF01479 S4 domain Afer_1357 PF04079 Segregation and condensation complex subunit ScpB Afer_1360 PF02754 Cysteine-rich domain Afer_1360 PF13183 4Fe-4S dicluster domain Afer_1361 PF01565 FAD binding domain Afer_1362 PF02913 FAD linked oxidases, C-terminal domain Afer_1362 PF01565 FAD binding domain Afer_1363 PF00106 short chain dehydrogenase Afer_1364 PF13286 Phosphohydrolase-associated domain Afer_1364 PF01966 HD domain Afer_1367 PF00501 AMP-binding enzyme Afer_1367 PF13193 AMP-binding enzyme C-terminal domain Afer_1368 PF01906 Putative heavy-metal-binding Afer_1370 PF00108 Thiolase, N-terminal domain Afer_1370 PF02803 Thiolase, C-terminal domain Afer_1371 PF03061 Thioesterase superfamily Afer_1373 PF00378 Enoyl-CoA hydratase/isomerase Afer_1374 PF00378 Enoyl-CoA hydratase/isomerase Afer_1375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Afer_1375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Afer_1377 PF00111 2Fe-2S iron-sulfur cluster binding domain Afer_1377 PF00970 Oxidoreductase FAD-binding domain Afer_1377 PF00175 Oxidoreductase NAD-binding domain Afer_1378 PF00171 Aldehyde dehydrogenase family Afer_1378 PF01619 Proline dehydrogenase Afer_1378 PF14850 DNA-binding domain of Proline dehydrogenase Afer_1378 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Afer_1383 PF00005 ABC transporter Afer_1383 PF12857 TOBE-like domain Afer_1385 PF03707 Bacterial signalling protein N terminal repeat Afer_1385 PF00563 EAL domain Afer_1385 PF00990 Diguanylate cyclase, GGDEF domain Afer_1393 PF08774 VRR-NUC domain Afer_1393 PF04851 Type III restriction enzyme, res subunit Afer_1394 PF01555 DNA methylase Afer_1394 PF18273 Type III R-M EcoP15I C-terminal domain Afer_1401 PF00563 EAL domain Afer_1401 PF04940 Sensors of blue-light using FAD Afer_1402 PF12792 CSS motif domain associated with EAL Afer_1402 PF00563 EAL domain Afer_1407 PF04343 Protein of unknown function, DUF488 Afer_1408 PF00694 Aconitase C-terminal domain Afer_1408 PF00330 Aconitase family (aconitate hydratase) Afer_1409 PF07702 UTRA domain Afer_1409 PF00392 Bacterial regulatory proteins, gntR family Afer_1410 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Afer_1412 PF01546 Peptidase family M20/M25/M40 Afer_1414 PF17392 Urocanase C-terminal domain Afer_1414 PF01175 Urocanase Rossmann-like domain Afer_1414 PF17391 Urocanase N-terminal domain Afer_1415 PF01979 Amidohydrolase family Afer_1424 PF04984 Phage tail sheath protein subtilisin-like domain Afer_1424 PF17482 Phage tail sheath C-terminal domain Afer_1425 PF00239 Resolvase, N terminal domain Afer_1426 PF00239 Resolvase, N terminal domain Afer_1430 PF09861 Lactate racemase N-terminal domain Afer_1431 PF08240 Alcohol dehydrogenase GroES-like domain Afer_1431 PF00107 Zinc-binding dehydrogenase Afer_1434 PF00083 Sugar (and other) transporter Afer_1435 PF01965 DJ-1/PfpI family Afer_1437 PF07690 Major Facilitator Superfamily Afer_1438 PF00440 Bacterial regulatory proteins, tetR family Afer_1438 PF08361 MAATS-type transcriptional repressor, C-terminal region Afer_1441 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Afer_1441 PF07685 CobB/CobQ-like glutamine amidotransferase domain Afer_1442 PF08245 Mur ligase middle domain Afer_1442 PF08353 Domain of unknown function (DUF1727) Afer_1443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Afer_1443 PF03466 LysR substrate binding domain Afer_1444 PF00106 short chain dehydrogenase Afer_1446 PF00196 Bacterial regulatory proteins, luxR family Afer_1446 PF00072 Response regulator receiver domain Afer_1447 PF00582 Universal stress protein family Afer_1448 PF07690 Major Facilitator Superfamily Afer_1453 PF01475 Ferric uptake regulator family Afer_1455 PF00248 Aldo/keto reductase family Afer_1457 PF00398 Ribosomal RNA adenine dimethylase Afer_1458 PF01425 Amidase Afer_1460 PF00271 Helicase conserved C-terminal domain Afer_1460 PF00270 DEAD/DEAH box helicase Afer_1461 PF00633 Helix-hairpin-helix motif Afer_1461 PF00730 HhH-GPD superfamily base excision DNA repair protein Afer_1462 PF00583 Acetyltransferase (GNAT) family Afer_1463 PF00266 Aminotransferase class-V Afer_1467 PF02811 PHP domain Afer_1467 PF11490 DNA polymerase III polC-type N-terminus II Afer_1467 PF14480 DNA polymerase III polC-type N-terminus I Afer_1467 PF00929 Exonuclease Afer_1467 PF14579 Helix-hairpin-helix motif Afer_1467 PF07733 Bacterial DNA polymerase III alpha NTPase domain Afer_1467 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Afer_1468 PF02885 Glycosyl transferase family, helical bundle domain Afer_1468 PF00591 Glycosyl transferase family, a/b domain Afer_1469 PF13185 GAF domain Afer_1469 PF00563 EAL domain Afer_1469 PF00990 Diguanylate cyclase, GGDEF domain Afer_1470 PF00990 Diguanylate cyclase, GGDEF domain Afer_1470 PF00563 EAL domain Afer_1470 PF08448 PAS fold Afer_1471 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_1471 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_1471 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_1472 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Afer_1472 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Afer_1474 PF02222 ATP-grasp domain Afer_1474 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Afer_1475 PF00731 AIR carboxylase Afer_1478 PF02599 Global regulator protein family Afer_1485 PF01527 Transposase Afer_1486 PF00665 Integrase core domain Afer_1486 PF13276 HTH-like domain Afer_1490 PF07690 Major Facilitator Superfamily Afer_1491 PF00719 Inorganic pyrophosphatase Afer_1492 PF01106 NifU-like domain Afer_1493 PF00378 Enoyl-CoA hydratase/isomerase Afer_1495 PF01053 Cys/Met metabolism PLP-dependent enzyme Afer_1496 PF10611 Protein of unknown function (DUF2469) Afer_1497 PF01245 Ribosomal protein L19 Afer_1498 PF01746 tRNA (Guanine-1)-methyltransferase Afer_1499 PF05239 PRC-barrel domain Afer_1499 PF01782 RimM N-terminal domain Afer_1501 PF00886 Ribosomal protein S16 Afer_1502 PF02978 Signal peptide binding domain Afer_1502 PF02881 SRP54-type protein, helical bundle domain Afer_1502 PF00448 SRP54-type protein, GTPase domain Afer_1503 PF02881 SRP54-type protein, helical bundle domain Afer_1503 PF00448 SRP54-type protein, GTPase domain Afer_1507 PF06470 SMC proteins Flexible Hinge Domain Afer_1507 PF02463 RecF/RecN/SMC N terminal domain Afer_1508 PF06827 Zinc finger found in FPG and IleRS Afer_1508 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Afer_1508 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Afer_1509 PF00035 Double-stranded RNA binding motif Afer_1509 PF14622 Ribonuclease-III-like Afer_1510 PF00550 Phosphopantetheine attachment site Afer_1511 PF02504 Fatty acid synthesis protein Afer_1514 PF01467 Cytidylyltransferase-like Afer_1516 PF17191 RecG wedge domain Afer_1516 PF00271 Helicase conserved C-terminal domain Afer_1516 PF00270 DEAD/DEAH box helicase Afer_1517 PF02734 DAK2 domain Afer_1517 PF13684 Dihydroxyacetone kinase family Afer_1518 PF00830 Ribosomal L28 family Afer_1521 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Afer_1521 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Afer_1522 PF01263 Aldose 1-epimerase Afer_1523 PF00033 Cytochrome b/b6/petB Afer_1523 PF00032 Cytochrome b(C-terminal)/b6/petD Afer_1525 PF03707 Bacterial signalling protein N terminal repeat Afer_1525 PF00990 Diguanylate cyclase, GGDEF domain Afer_1525 PF00563 EAL domain Afer_1526 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_1526 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_1526 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_1527 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Afer_1527 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Afer_1528 PF00749 tRNA synthetases class I (E and Q), catalytic domain Afer_1529 PF00682 HMGL-like Afer_1529 PF08502 LeuA allosteric (dimerisation) domain Afer_1530 PF01842 ACT domain Afer_1530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Afer_1530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Afer_1531 PF00155 Aminotransferase class I and II Afer_1532 PF00266 Aminotransferase class-V Afer_1533 PF00694 Aconitase C-terminal domain Afer_1534 PF00330 Aconitase family (aconitate hydratase) Afer_1535 PF03449 Transcription elongation factor, N-terminal Afer_1535 PF01272 Transcription elongation factor, GreA/GreB, C-term Afer_1536 PF00180 Isocitrate/isopropylmalate dehydrogenase Afer_1537 PF01063 Amino-transferase class IV Afer_1538 PF00682 HMGL-like Afer_1538 PF08502 LeuA allosteric (dimerisation) domain Afer_1542 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1545 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Afer_1545 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Afer_1546 PF01842 ACT domain Afer_1546 PF10369 Small subunit of acetolactate synthase Afer_1547 PF00205 Thiamine pyrophosphate enzyme, central domain Afer_1547 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Afer_1547 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Afer_1548 PF00920 Dehydratase family Afer_1549 PF02934 GatB/GatE catalytic domain Afer_1549 PF02637 GatB domain Afer_1550 PF01425 Amidase Afer_1551 PF02686 Glu-tRNAGln amidotransferase C subunit Afer_1553 PF00069 Protein kinase domain Afer_1553 PF03793 PASTA domain Afer_1554 PF12826 Helix-hairpin-helix motif Afer_1554 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Afer_1554 PF03120 NAD-dependent DNA ligase OB-fold domain Afer_1554 PF00533 BRCA1 C Terminus (BRCT) domain Afer_1554 PF01653 NAD-dependent DNA ligase adenylation domain Afer_1558 PF01790 Prolipoprotein diacylglyceryl transferase Afer_1559 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Afer_1559 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Afer_1560 PF00144 Beta-lactamase Afer_1561 PF00085 Thioredoxin Afer_1565 PF02625 XdhC and CoxI family Afer_1565 PF13478 XdhC Rossmann domain Afer_1568 PF00941 FAD binding domain in molybdopterin dehydrogenase Afer_1568 PF03450 CO dehydrogenase flavoprotein C-terminal domain Afer_1569 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Afer_1569 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Afer_1570 PF01799 [2Fe-2S] binding domain Afer_1570 PF00111 2Fe-2S iron-sulfur cluster binding domain Afer_1572 PF01145 SPFH domain / Band 7 family Afer_1573 PF02653 Branched-chain amino acid transport system / permease component Afer_1574 PF00005 ABC transporter Afer_1575 PF13407 Periplasmic binding protein domain Afer_1576 PF00486 Transcriptional regulatory protein, C terminal Afer_1576 PF00072 Response regulator receiver domain Afer_1577 PF00005 ABC transporter Afer_1579 PF00580 UvrD/REP helicase N-terminal domain Afer_1579 PF13361 UvrD-like helicase C-terminal domain Afer_1579 PF12705 PD-(D/E)XK nuclease superfamily Afer_1581 PF04545 Sigma-70, region 4 Afer_1581 PF04542 Sigma-70 region 2 Afer_1585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Afer_1585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Afer_1589 PF00113 Enolase, C-terminal TIM barrel domain Afer_1589 PF03952 Enolase, N-terminal domain Afer_1590 PF03819 MazG nucleotide pyrophosphohydrolase domain Afer_1590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_1594 PF03461 TRCF domain Afer_1594 PF00271 Helicase conserved C-terminal domain Afer_1594 PF02559 CarD-like/TRCF domain Afer_1594 PF00270 DEAD/DEAH box helicase Afer_1594 PF17757 UvrB interaction domain Afer_1595 PF01195 Peptidyl-tRNA hydrolase Afer_1596 PF14693 Ribosomal protein TL5, C-terminal domain Afer_1596 PF01386 Ribosomal L25p family Afer_1597 PF14572 Phosphoribosyl synthetase-associated domain Afer_1597 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Afer_1599 PF12804 MobA-like NTP transferase domain Afer_1599 PF00132 Bacterial transferase hexapeptide (six repeats) Afer_1601 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Afer_1601 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Afer_1602 PF00326 Prolyl oligopeptidase family Afer_1602 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Afer_1603 PF01575 MaoC like domain Afer_1606 PF01434 Peptidase family M41 Afer_1606 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1606 PF17862 AAA+ lid domain Afer_1606 PF06480 FtsH Extracellular Afer_1609 PF02585 GlcNAc-PI de-N-acetylase Afer_1611 PF01336 OB-fold nucleic acid binding domain Afer_1611 PF07733 Bacterial DNA polymerase III alpha NTPase domain Afer_1611 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Afer_1611 PF14579 Helix-hairpin-helix motif Afer_1611 PF02811 PHP domain Afer_1615 PF01612 3'-5' exonuclease Afer_1615 PF00570 HRDC domain Afer_1620 PF01850 PIN domain Afer_1621 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Afer_1624 PF01479 S4 domain Afer_1624 PF00579 tRNA synthetases class I (W and Y) Afer_1625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Afer_1625 PF16582 Middle domain of thiamine pyrophosphate Afer_1625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Afer_1626 PF12697 Alpha/beta hydrolase family Afer_1627 PF01040 UbiA prenyltransferase family Afer_1628 PF00501 AMP-binding enzyme Afer_1628 PF13193 AMP-binding enzyme C-terminal domain Afer_1635 PF12728 Helix-turn-helix domain Afer_1638 PF07733 Bacterial DNA polymerase III alpha NTPase domain Afer_1638 PF02811 PHP domain Afer_1638 PF14579 Helix-hairpin-helix motif Afer_1638 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Afer_1640 PF00282 Pyridoxal-dependent decarboxylase conserved domain Afer_1641 PF16177 Acetyl-coenzyme A synthetase N-terminus Afer_1641 PF13193 AMP-binding enzyme C-terminal domain Afer_1641 PF00501 AMP-binding enzyme Afer_1644 PF14489 QueF-like protein Afer_1646 PF00892 EamA-like transporter family Afer_1647 PF00239 Resolvase, N terminal domain Afer_1647 PF02796 Helix-turn-helix domain of resolvase Afer_1655 PF00872 Transposase, Mutator family Afer_1657 PF02245 Methylpurine-DNA glycosylase (MPG) Afer_1658 PF14698 Argininosuccinate lyase C-terminal Afer_1658 PF00206 Lyase Afer_1659 PF00764 Arginosuccinate synthase Afer_1660 PF02863 Arginine repressor, C-terminal domain Afer_1660 PF01316 Arginine repressor, DNA binding domain Afer_1661 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Afer_1661 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Afer_1662 PF00202 Aminotransferase class-III Afer_1663 PF00696 Amino acid kinase family Afer_1664 PF01960 ArgJ family Afer_1665 PF01118 Semialdehyde dehydrogenase, NAD binding domain Afer_1665 PF02774 Semialdehyde dehydrogenase, dimerisation domain Afer_1668 PF04174 A circularly permuted ATPgrasp Afer_1670 PF08379 Bacterial transglutaminase-like N-terminal region Afer_1670 PF01841 Transglutaminase-like superfamily Afer_1672 PF01925 Sulfite exporter TauE/SafE Afer_1673 PF03147 Ferredoxin-fold anticodon binding domain Afer_1673 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Afer_1673 PF01588 Putative tRNA binding domain Afer_1673 PF03484 tRNA synthetase B5 domain Afer_1673 PF03483 B3/4 domain Afer_1674 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Afer_1674 PF01409 tRNA synthetases class II core domain (F) Afer_1675 PF08032 RNA 2'-O ribose methyltransferase substrate binding Afer_1675 PF00588 SpoU rRNA Methylase family Afer_1676 PF00453 Ribosomal protein L20 Afer_1677 PF01632 Ribosomal protein L35 Afer_1678 PF05198 Translation initiation factor IF-3, N-terminal domain Afer_1678 PF00707 Translation initiation factor IF-3, C-terminal domain Afer_1681 PF01634 ATP phosphoribosyltransferase Afer_1681 PF08029 HisG, C-terminal domain Afer_1682 PF00885 6,7-dimethyl-8-ribityllumazine synthase Afer_1683 PF00925 GTP cyclohydrolase II Afer_1683 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Afer_1684 PF00677 Lumazine binding domain Afer_1685 PF01872 RibD C-terminal domain Afer_1685 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Afer_1687 PF02911 Formyl transferase, C-terminal domain Afer_1687 PF00551 Formyl transferase Afer_1688 PF01327 Polypeptide deformylase Afer_1692 PF02772 S-adenosylmethionine synthetase, central domain Afer_1692 PF00438 S-adenosylmethionine synthetase, N-terminal domain Afer_1692 PF02773 S-adenosylmethionine synthetase, C-terminal domain Afer_1693 PF02441 Flavoprotein Afer_1693 PF04127 DNA / pantothenate metabolism flavoprotein Afer_1694 PF01192 RNA polymerase Rpb6 Afer_1695 PF00625 Guanylate kinase Afer_1697 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Afer_1698 PF01180 Dihydroorotate dehydrogenase Afer_1699 PF02142 MGS-like domain Afer_1699 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Afer_1699 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Afer_1700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Afer_1700 PF00117 Glutamine amidotransferase class-I Afer_1701 PF01979 Amidohydrolase family Afer_1702 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Afer_1702 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Afer_1703 PF00156 Phosphoribosyl transferase domain Afer_1707 PF00115 Cytochrome C and Quinol oxidase polypeptide I Afer_1710 PF00578 AhpC/TSA family Afer_1711 PF01040 UbiA prenyltransferase family Afer_1712 PF00557 Metallopeptidase family M24 Afer_1712 PF01321 Creatinase/Prolidase N-terminal domain Afer_1713 PF08207 Elongation factor P (EF-P) KOW-like domain Afer_1713 PF01132 Elongation factor P (EF-P) OB domain Afer_1713 PF09285 Elongation factor P, C-terminal Afer_1714 PF01029 NusB family Afer_1716 PF01220 Dehydroquinase class II Afer_1717 PF01761 3-dehydroquinate synthase Afer_1718 PF01264 Chorismate synthase Afer_1720 PF13350 Tyrosine phosphatase family Afer_1721 PF01047 MarR family Afer_1722 PF04264 YceI-like domain Afer_1723 PF01106 NifU-like domain Afer_1723 PF01521 Iron-sulphur cluster biosynthesis Afer_1724 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Afer_1724 PF18603 L-amino acid ligase C-terminal domain 2 Afer_1726 PF00580 UvrD/REP helicase N-terminal domain Afer_1726 PF13361 UvrD-like helicase C-terminal domain Afer_1727 PF03372 Endonuclease/Exonuclease/phosphatase family Afer_1728 PF07977 FabA-like domain Afer_1731 PF13426 PAS domain Afer_1731 PF00990 Diguanylate cyclase, GGDEF domain Afer_1731 PF00563 EAL domain Afer_1732 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Afer_1732 PF16078 2-oxoglutarate dehydrogenase N-terminus Afer_1732 PF00676 Dehydrogenase E1 component Afer_1732 PF02779 Transketolase, pyrimidine binding domain Afer_1732 PF16870 2-oxoglutarate dehydrogenase C-terminal Afer_1733 PF08386 TAP-like protein Afer_1733 PF00561 alpha/beta hydrolase fold Afer_1734 PF00781 Diacylglycerol kinase catalytic domain Afer_1735 PF01370 NAD dependent epimerase/dehydratase family Afer_1735 PF08338 Domain of unknown function (DUF1731) Afer_1736 PF00011 Hsp20/alpha crystallin family Afer_1737 PF03109 ABC1 family Afer_1739 PF01040 UbiA prenyltransferase family Afer_1740 PF04030 D-arabinono-1,4-lactone oxidase Afer_1740 PF01565 FAD binding domain Afer_1741 PF00106 short chain dehydrogenase Afer_1742 PF08486 Stage II sporulation protein Afer_1747 PF00005 ABC transporter Afer_1748 PF01061 ABC-2 type transporter Afer_1749 PF00574 Clp protease Afer_1750 PF01725 Ham1 family Afer_1751 PF01138 3' exoribonuclease family, domain 1 Afer_1751 PF03725 3' exoribonuclease family, domain 2 Afer_1752 PF01177 Asp/Glu/Hydantoin racemase Afer_1754 PF01668 SmpB protein Afer_1760 PF02687 FtsX-like permease family Afer_1760 PF18075 FtsX extracellular domain Afer_1761 PF00005 ABC transporter Afer_1762 PF03462 PCRF domain Afer_1762 PF00472 RF-1 domain Afer_1763 PF07516 SecA Wing and Scaffold domain Afer_1763 PF01043 SecA preprotein cross-linking domain Afer_1763 PF02810 SEC-C motif Afer_1763 PF07517 SecA DEAD-like domain Afer_1764 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Afer_1764 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Afer_1765 PF05221 S-adenosyl-L-homocysteine hydrolase Afer_1765 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Afer_1766 PF01380 SIS domain Afer_1766 PF10432 Bacterial phospho-glucose isomerase C-terminal SIS domain Afer_1768 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Afer_1768 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Afer_1768 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Afer_1768 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Afer_1770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_1770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_1770 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_1774 PF01527 Transposase Afer_1775 PF13276 HTH-like domain Afer_1775 PF00665 Integrase core domain Afer_1775 PF13333 Integrase core domain Afer_1777 PF03328 HpcH/HpaI aldolase/citrate lyase family Afer_1778 PF00128 Alpha amylase, catalytic domain Afer_1778 PF16657 Maltogenic Amylase, C-terminal domain Afer_1779 PF00378 Enoyl-CoA hydratase/isomerase Afer_1781 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Afer_1783 PF01738 Dienelactone hydrolase family Afer_1786 PF10415 Fumarase C C-terminus Afer_1786 PF00206 Lyase Afer_1787 PF00698 Acyl transferase domain Afer_1787 PF08240 Alcohol dehydrogenase GroES-like domain Afer_1787 PF00107 Zinc-binding dehydrogenase Afer_1787 PF02801 Beta-ketoacyl synthase, C-terminal domain Afer_1787 PF08659 KR domain Afer_1787 PF00109 Beta-ketoacyl synthase, N-terminal domain Afer_1787 PF00550 Phosphopantetheine attachment site Afer_1787 PF14765 Polyketide synthase dehydratase Afer_1787 PF16197 Ketoacyl-synthetase C-terminal extension Afer_1790 PF12146 Serine aminopeptidase, S33 Afer_1792 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Afer_1794 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Afer_1795 PF02874 ATP synthase alpha/beta family, beta-barrel domain Afer_1795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Afer_1796 PF00231 ATP synthase Afer_1797 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Afer_1797 PF02874 ATP synthase alpha/beta family, beta-barrel domain Afer_1797 PF00306 ATP synthase alpha/beta chain, C terminal domain Afer_1798 PF00213 ATP synthase delta (OSCP) subunit Afer_1799 PF00430 ATP synthase B/B' CF(0) Afer_1800 PF00137 ATP synthase subunit C Afer_1801 PF00119 ATP synthase A chain Afer_1804 PF00953 Glycosyl transferase family 4 Afer_1805 PF00464 Serine hydroxymethyltransferase Afer_1807 PF17827 PrmC N-terminal domain Afer_1807 PF05175 Methyltransferase small domain Afer_1808 PF00472 RF-1 domain Afer_1808 PF03462 PCRF domain Afer_1810 PF01197 Ribosomal protein L31 Afer_1811 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Afer_1811 PF07498 Rho termination factor, N-terminal domain Afer_1811 PF07497 Rho termination factor, RNA-binding domain Afer_1812 PF00291 Pyridoxal-phosphate dependent enzyme Afer_1813 PF00742 Homoserine dehydrogenase Afer_1813 PF01842 ACT domain Afer_1813 PF03447 Homoserine dehydrogenase, NAD binding domain Afer_1814 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Afer_1814 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Afer_1815 PF03485 Arginyl tRNA synthetase N terminal domain Afer_1815 PF00750 tRNA synthetases class I (R) Afer_1815 PF05746 DALR anticodon binding domain Afer_1816 PF08245 Mur ligase middle domain Afer_1816 PF01225 Mur ligase family, catalytic domain Afer_1816 PF02875 Mur ligase family, glutamate ligase domain Afer_1817 PF00535 Glycosyl transferase family 2 Afer_1818 PF09335 SNARE associated Golgi protein Afer_1819 PF02416 mttA/Hcf106 family Afer_1820 PF00107 Zinc-binding dehydrogenase Afer_1820 PF08240 Alcohol dehydrogenase GroES-like domain Afer_1823 PF00115 Cytochrome C and Quinol oxidase polypeptide I Afer_1824 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Afer_1825 PF13631 Cytochrome b(N-terminal)/b6/petB Afer_1826 PF00355 Rieske [2Fe-2S] domain Afer_1828 PF00510 Cytochrome c oxidase subunit III Afer_1830 PF01208 Uroporphyrinogen decarboxylase (URO-D) Afer_1832 PF02277 Phosphoribosyltransferase Afer_1835 PF00285 Citrate synthase, C-terminal domain Afer_1838 PF00293 NUDIX domain Afer_1844 PF17862 AAA+ lid domain Afer_1844 PF01434 Peptidase family M41 Afer_1844 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1846 PF00118 TCP-1/cpn60 chaperonin family Afer_1847 PF02597 ThiS family Afer_1848 PF00291 Pyridoxal-phosphate dependent enzyme Afer_1849 PF00982 Glycosyltransferase family 20 Afer_1853 PF06463 Molybdenum Cofactor Synthesis C Afer_1853 PF04055 Radical SAM superfamily Afer_1854 PF01967 MoaC family Afer_1856 PF01022 Bacterial regulatory protein, arsR family Afer_1857 PF02040 Arsenical pump membrane protein Afer_1858 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_1858 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1859 PF01964 Radical SAM ThiC family Afer_1859 PF13667 ThiC-associated domain Afer_1863 PF01527 Transposase Afer_1864 PF01695 IstB-like ATP binding protein Afer_1865 PF00665 Integrase core domain Afer_1866 PF04555 Restriction endonuclease XhoI Afer_1869 PF00436 Single-strand binding protein family Afer_1871 PF03699 Uncharacterised protein family (UPF0182) Afer_1873 PF05362 Lon protease (S16) C-terminal proteolytic domain Afer_1873 PF02190 ATP-dependent protease La (LON) substrate-binding domain Afer_1873 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1874 PF00596 Class II Aldolase and Adducin N-terminal domain Afer_1876 PF01047 MarR family Afer_1878 PF01061 ABC-2 type transporter Afer_1879 PF00005 ABC transporter Afer_1879 PF13732 Domain of unknown function (DUF4162) Afer_1880 PF00056 lactate/malate dehydrogenase, NAD binding domain Afer_1880 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Afer_1881 PF00180 Isocitrate/isopropylmalate dehydrogenase Afer_1884 PF02391 MoaE protein Afer_1894 PF01527 Transposase Afer_1897 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Afer_1899 PF00588 SpoU rRNA Methylase family Afer_1899 PF08032 RNA 2'-O ribose methyltransferase substrate binding Afer_1900 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Afer_1900 PF02542 YgbB family Afer_1901 PF02559 CarD-like/TRCF domain Afer_1902 PF02457 DisA bacterial checkpoint controller nucleotide-binding Afer_1902 PF12826 Helix-hairpin-helix motif Afer_1902 PF10635 DisA bacterial checkpoint controller linker region Afer_1903 PF07724 AAA domain (Cdc48 subfamily) Afer_1903 PF17871 AAA lid domain Afer_1903 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1903 PF02861 Clp amino terminal domain, pathogenicity island component Afer_1903 PF10431 C-terminal, D2-small domain, of ClpB protein Afer_1905 PF00348 Polyprenyl synthetase Afer_1906 PF01336 OB-fold nucleic acid binding domain Afer_1906 PF00152 tRNA synthetases class II (D, K and N) Afer_1907 PF03309 Type III pantothenate kinase Afer_1908 PF02569 Pantoate-beta-alanine ligase Afer_1909 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Afer_1911 PF00809 Pterin binding enzyme Afer_1912 PF01227 GTP cyclohydrolase I Afer_1914 PF09179 TilS substrate binding domain Afer_1914 PF01171 PP-loop family Afer_1918 PF04542 Sigma-70 region 2 Afer_1918 PF08281 Sigma-70, region 4 Afer_1920 PF02223 Thymidylate kinase Afer_1921 PF13368 Topoisomerase C-terminal repeat Afer_1921 PF01131 DNA topoisomerase Afer_1921 PF01751 Toprim domain Afer_1922 PF13520 Amino acid permease Afer_1923 PF02080 TrkA-C domain Afer_1923 PF02254 TrkA-N domain Afer_1924 PF02254 TrkA-N domain Afer_1924 PF02080 TrkA-C domain Afer_1928 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Afer_1932 PF03459 TOBE domain Afer_1932 PF00005 ABC transporter Afer_1935 PF00155 Aminotransferase class I and II Afer_1936 PF03848 Tellurite resistance protein TehB Afer_1938 PF13175 AAA ATPase domain Afer_1940 PF09190 DALR domain Afer_1940 PF01406 tRNA synthetases class I (C) catalytic domain Afer_1942 PF00156 Phosphoribosyl transferase domain Afer_1943 PF02769 AIR synthase related protein, C-terminal domain Afer_1943 PF00586 AIR synthase related protein, N-terminal domain Afer_1944 PF00156 Phosphoribosyl transferase domain Afer_1947 PF03949 Malic enzyme, NAD binding domain Afer_1947 PF00390 Malic enzyme, N-terminal domain Afer_1952 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Afer_1952 PF02769 AIR synthase related protein, C-terminal domain Afer_1952 PF00586 AIR synthase related protein, N-terminal domain Afer_1955 PF01259 SAICAR synthetase Afer_1956 PF00206 Lyase Afer_1956 PF10397 Adenylosuccinate lyase C-terminus Afer_1957 PF02844 Phosphoribosylglycinamide synthetase, N domain Afer_1957 PF02843 Phosphoribosylglycinamide synthetase, C domain Afer_1957 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Afer_1958 PF00709 Adenylosuccinate synthetase Afer_1959 PF00300 Histidine phosphatase superfamily (branch 1) Afer_1960 PF00012 Hsp70 protein Afer_1961 PF01025 GrpE Afer_1962 PF00684 DnaJ central domain Afer_1962 PF01556 DnaJ C terminal domain Afer_1962 PF00226 DnaJ domain Afer_1963 PF13411 MerR HTH family regulatory protein Afer_1964 PF10431 C-terminal, D2-small domain, of ClpB protein Afer_1964 PF07724 AAA domain (Cdc48 subfamily) Afer_1964 PF02861 Clp amino terminal domain, pathogenicity island component Afer_1964 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1964 PF17871 AAA lid domain Afer_1967 PF00120 Glutamine synthetase, catalytic domain Afer_1967 PF03951 Glutamine synthetase, beta-Grasp domain Afer_1971 PF00535 Glycosyl transferase family 2 Afer_1974 PF00535 Glycosyl transferase family 2 Afer_1974 PF00534 Glycosyl transferases group 1 Afer_1978 PF02233 NAD(P) transhydrogenase beta subunit Afer_1979 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Afer_1980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Afer_1980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Afer_1981 PF00072 Response regulator receiver domain Afer_1981 PF00196 Bacterial regulatory proteins, luxR family Afer_1983 PF00202 Aminotransferase class-III Afer_1984 PF00180 Isocitrate/isopropylmalate dehydrogenase Afer_1984 PF18324 Hypothetical protein TT1725 Afer_1987 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1987 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Afer_1988 PF01645 Conserved region in glutamate synthase Afer_1988 PF04898 Glutamate synthase central domain Afer_1988 PF00310 Glutamine amidotransferases class-II Afer_1988 PF01493 GXGXG motif Afer_1990 PF02674 Colicin V production protein Afer_1991 PF00753 Metallo-beta-lactamase superfamily Afer_1991 PF16123 Hydroxyacylglutathione hydrolase C-terminus Afer_1992 PF01546 Peptidase family M20/M25/M40 Afer_1992 PF07687 Peptidase dimerisation domain Afer_1993 PF02646 RmuC family Afer_1994 PF00581 Rhodanese-like domain Afer_1995 PF00909 Ammonium Transporter Family Afer_1996 PF00581 Rhodanese-like domain Afer_2002 PF02913 FAD linked oxidases, C-terminal domain Afer_2002 PF01565 FAD binding domain Afer_2005 PF02743 Cache domain Afer_2005 PF00672 HAMP domain Afer_2005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Afer_2006 PF02839 Carbohydrate binding domain Afer_2008 PF13411 MerR HTH family regulatory protein Afer_2009 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_2009 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_2012 PF04244 Deoxyribodipyrimidine photo-lyase-related protein Afer_2014 PF13276 HTH-like domain Afer_2014 PF13683 Integrase core domain Afer_2015 PF01527 Transposase Afer_2016 PF01850 PIN domain Afer_2017 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Afer_2018 PF14437 MafB19-like deaminase Afer_2021 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Afer_2021 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Afer_2023 PF02515 CoA-transferase family III Afer_2024 PF01614 Bacterial transcriptional regulator Afer_2024 PF09339 IclR helix-turn-helix domain Afer_2025 PF01979 Amidohydrolase family Afer_2027 PF07690 Major Facilitator Superfamily Afer_2029 PF00664 ABC transporter transmembrane region Afer_2029 PF00005 ABC transporter Afer_2030 PF17762 HTH domain found in ParB protein Afer_2030 PF02195 ParB-like nuclease domain Afer_2031 PF13614 AAA domain Afer_2033 PF02527 rRNA small subunit methyltransferase G Afer_2034 PF14804 Jag N-terminus Afer_2034 PF01424 R3H domain Afer_2035 PF02096 60Kd inner membrane protein Afer_2035 PF14849 YidC periplasmic domain Afer_2036 PF01809 Putative membrane protein insertion efficiency factor Afer_2037 PF00825 Ribonuclease P Afer_2038 PF00468 Ribosomal protein L34