Afer_0001 PF00308 Bacterial dnaA protein Afer_0001 PF08299 Bacterial dnaA protein helix-turn-helix Afer_0001 PF11638 DnaA N-terminal domain Afer_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Afer_0002 PF02767 DNA polymerase III beta subunit, central domain Afer_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Afer_0003 PF02463 RecF/RecN/SMC N terminal domain Afer_0005 PF00204 DNA gyrase B Afer_0005 PF00986 DNA gyrase B subunit, carboxyl terminus Afer_0005 PF01751 Toprim domain Afer_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0006 PF00521 DNA gyrase/topoisomerase IV, subunit A Afer_0006 PF03989 DNA gyrase C-terminal domain, beta-propeller Afer_0008 PF00437 Type II/IV secretion system protein Afer_0021 PF13632 Glycosyl transferase family group 2 Afer_0022 PF00563 EAL domain Afer_0023 PF01743 Poly A polymerase head domain Afer_0023 PF01966 HD domain Afer_0023 PF12627 Probable RNA and SrmB- binding site of polymerase A Afer_0024 PF00850 Histone deacetylase domain Afer_0025 PF00583 Acetyltransferase (GNAT) family Afer_0027 PF03023 Afer_0027 Afer_0028 PF02645 Uncharacterised protein, DegV family COG1307 Afer_0030 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0031 PF00085 Thioredoxin Afer_0032 PF01471 Putative peptidoglycan binding domain Afer_0033 PF01909 Nucleotidyltransferase domain Afer_0033 PF13560 Helix-turn-helix domain Afer_0034 PF01934 Protein of unknown function DUF86 Afer_0035 PF00561 alpha/beta hydrolase fold Afer_0036 PF07690 Major Facilitator Superfamily Afer_0037 PF01658 Myo-inositol-1-phosphate synthase Afer_0038 PF03551 Transcriptional regulator PadR-like family Afer_0039 PF17249 Afer_0039 Afer_0040 PF02548 Ketopantoate hydroxymethyltransferase Afer_0041 PF00772 DnaB-like helicase N terminal domain Afer_0041 PF03796 DnaB-like helicase C terminal domain Afer_0042 PF01281 Ribosomal protein L9, N-terminal domain Afer_0042 PF03948 Ribosomal protein L9, C-terminal domain Afer_0043 PF01084 Ribosomal protein S18 Afer_0044 PF00436 Single-strand binding protein family Afer_0045 PF01250 Ribosomal protein S6 Afer_0050 PF03640 Afer_0050 Afer_0051 PF02754 Afer_0051 Afer_0051 PF13237 4Fe-4S dicluster domain Afer_0052 PF00692 dUTPase Afer_0061 PF00440 Bacterial regulatory proteins, tetR family Afer_0061 PF16859 Afer_0061 Afer_0063 PF07702 UTRA domain Afer_0065 PF00150 Cellulase (glycosyl hydrolase family 5) Afer_0067 PF01527 Transposase Afer_0068 PF00665 Integrase core domain Afer_0068 PF13276 Afer_0068 Afer_0069 PF13231 Afer_0069 Afer_0070 PF13641 Glycosyltransferase like family 2 Afer_0071 PF16640 Afer_0071 Afer_0072 PF03704 Bacterial transcriptional activator domain Afer_0072 PF13191 AAA ATPase domain Afer_0073 PF04203 Sortase family Afer_0074 PF01734 Patatin-like phospholipase Afer_0075 PF01047 MarR family Afer_0076 PF00282 Pyridoxal-dependent decarboxylase conserved domain Afer_0077 PF01230 HIT domain Afer_0078 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0079 PF13380 CoA binding domain Afer_0080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Afer_0081 PF09286 Pro-kumamolisin, activation domain Afer_0082 PF13393 Histidyl-tRNA synthetase Afer_0083 PF03640 Afer_0083 Afer_0084 PF01979 Amidohydrolase family Afer_0084 PF13382 Adenine deaminase C-terminal domain Afer_0085 PF00108 Thiolase, N-terminal domain Afer_0085 PF02803 Thiolase, C-terminal domain Afer_0086 PF00117 Glutamine amidotransferase class-I Afer_0087 PF00069 Protein kinase domain Afer_0087 PF03793 PASTA domain Afer_0088 PF00069 Protein kinase domain Afer_0088 PF03793 PASTA domain Afer_0089 PF00905 Penicillin binding protein transpeptidase domain Afer_0090 PF07228 Stage II sporulation protein E (SpoIIE) Afer_0091 PF00498 FHA domain Afer_0092 PF00498 FHA domain Afer_0092 PF12401 Protein of unknown function (DUF2662) Afer_0093 PF01169 Afer_0093 Afer_0094 PF00171 Aldehyde dehydrogenase family Afer_0094 PF01575 MaoC like domain Afer_0097 PF00800 Prephenate dehydratase Afer_0097 PF01842 ACT domain Afer_0098 PF00731 AIR carboxylase Afer_0099 PF01969 Protein of unknown function DUF111 Afer_0100 PF07859 alpha/beta hydrolase fold Afer_0101 PF00311 Phosphoenolpyruvate carboxylase Afer_0102 PF13177 DNA polymerase III, delta subunit Afer_0103 PF02132 RecR protein Afer_0103 PF13662 Toprim domain Afer_0104 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Afer_0105 PF00107 Zinc-binding dehydrogenase Afer_0105 PF08240 Alcohol dehydrogenase GroES-like domain Afer_0106 PF00108 Thiolase, N-terminal domain Afer_0106 PF02803 Thiolase, C-terminal domain Afer_0107 PF00534 Glycosyl transferases group 1 Afer_0107 PF08241 Methyltransferase domain Afer_0108 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Afer_0109 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Afer_0111 PF00696 Amino acid kinase family Afer_0111 PF01842 ACT domain Afer_0111 PF13840 ACT domain Afer_0112 PF01118 Semialdehyde dehydrogenase, NAD binding domain Afer_0112 PF02774 Semialdehyde dehydrogenase, dimerisation domain Afer_0113 PF00669 Bacterial flagellin N-terminal helical region Afer_0113 PF00700 Bacterial flagellin C-terminal helical region Afer_0114 PF02465 Afer_0114 Afer_0114 PF07195 Afer_0114 Afer_0115 PF02561 Flagellar protein FliS Afer_0119 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Afer_0119 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Afer_0120 PF00101 Ribulose bisphosphate carboxylase, small chain Afer_0121 PF12288 Afer_0121 Afer_0122 PF08936 Carboxysome Shell Carbonic Anhydrase Afer_0123 PF03319 Ethanolamine utilisation protein EutN/carboxysome Afer_0124 PF00936 BMC domain Afer_0125 PF00936 BMC domain Afer_0126 PF00936 BMC domain Afer_0127 PF00210 Ferritin-like domain Afer_0129 PF13614 AAA domain Afer_0131 PF07728 AAA domain (dynein-related subfamily) Afer_0131 PF08406 Afer_0131 Afer_0132 PF00092 von Willebrand factor type A domain Afer_0133 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Afer_0133 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Afer_0133 PF10070 Afer_0133 Afer_0134 PF00460 Flagella basal body rod protein Afer_0135 PF00460 Flagella basal body rod protein Afer_0135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Afer_0136 PF02049 Afer_0136 Afer_0137 PF01514 Secretory protein of YscJ/FliF family Afer_0137 PF08345 Afer_0137 Afer_0138 PF01706 FliG C-terminal domain Afer_0138 PF14841 FliG middle domain Afer_0138 PF14842 FliG N-terminal domain Afer_0139 PF02108 Afer_0139 Afer_0140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Afer_0140 PF02874 ATP synthase alpha/beta family, beta-barrel domain Afer_0142 PF00877 NlpC/P60 family Afer_0142 PF01464 Transglycosylase SLT domain Afer_0144 PF03963 Afer_0144 Afer_0145 PF00460 Flagella basal body rod protein Afer_0145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Afer_0145 PF07559 Flagellar basal body protein FlaE Afer_0146 PF06289 Afer_0146 Afer_0147 PF01618 Afer_0147 Afer_0148 PF00691 OmpA family Afer_0148 PF13677 Afer_0148 Afer_0149 PF03748 Afer_0149 Afer_0150 PF01052 Surface presentation of antigens (SPOA) Afer_0150 PF02154 Flagellar motor switch protein FliM Afer_0151 PF01052 Surface presentation of antigens (SPOA) Afer_0152 PF04347 Afer_0152 Afer_0153 PF01527 Transposase Afer_0154 PF00665 Integrase core domain Afer_0154 PF13276 Afer_0154 Afer_0155 PF00813 Afer_0155 Afer_0156 PF01313 Afer_0156 Afer_0157 PF01311 Afer_0157 Afer_0158 PF01312 FlhB HrpN YscU SpaS Family Afer_0159 PF00771 FHIPEP family Afer_0162 PF00581 Rhodanese-like domain Afer_0163 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0164 PF04055 Radical SAM superfamily Afer_0165 PF00834 Ribulose-phosphate 3 epimerase family Afer_0166 PF00456 Transketolase, thiamine diphosphate binding domain Afer_0166 PF02779 Transketolase, pyrimidine binding domain Afer_0166 PF02780 Transketolase, C-terminal domain Afer_0166 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Afer_0167 PF00485 Phosphoribulokinase / Uridine kinase family Afer_0168 PF02308 Afer_0168 Afer_0169 PF00356 Bacterial regulatory proteins, lacI family Afer_0169 PF13377 Periplasmic binding protein-like domain Afer_0170 PF01229 Glycosyl hydrolases family 39 Afer_0171 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Afer_0172 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0173 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0173 PF12911 Afer_0173 Afer_0174 PF00005 ABC transporter Afer_0174 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Afer_0175 PF00005 ABC transporter Afer_0176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Afer_0176 PF03466 LysR substrate binding domain Afer_0177 PF00274 Fructose-bisphosphate aldolase class-I Afer_0179 PF02597 ThiS family Afer_0180 PF00072 Response regulator receiver domain Afer_0180 PF00196 Bacterial regulatory proteins, luxR family Afer_0181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0181 PF07730 Histidine kinase Afer_0181 PF13185 GAF domain Afer_0182 PF00990 GGDEF domain Afer_0183 PF06737 Transglycosylase-like domain Afer_0185 PF01738 Dienelactone hydrolase family Afer_0186 PF13302 Acetyltransferase (GNAT) domain Afer_0187 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Afer_0188 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Afer_0190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Afer_0190 PF02403 Seryl-tRNA synthetase N-terminal domain Afer_0191 PF00005 ABC transporter Afer_0192 PF01061 Afer_0192 Afer_0193 PF02628 Afer_0193 Afer_0194 PF02617 ATP-dependent Clp protease adaptor protein ClpS Afer_0196 PF09286 Pro-kumamolisin, activation domain Afer_0197 PF00107 Zinc-binding dehydrogenase Afer_0197 PF08240 Alcohol dehydrogenase GroES-like domain Afer_0198 PF01266 FAD dependent oxidoreductase Afer_0199 PF01475 Ferric uptake regulator family Afer_0200 PF00072 Response regulator receiver domain Afer_0200 PF00486 Transcriptional regulatory protein, C terminal Afer_0201 PF00512 His Kinase A (phospho-acceptor) domain Afer_0201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0205 PF01935 Domain of unknown function DUF87 Afer_0206 PF02534 Type IV secretory system Conjugative DNA transfer Afer_0206 PF12696 TraM recognition site of TraD and TraG Afer_0208 PF00460 Flagella basal body rod protein Afer_0208 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Afer_0209 PF00669 Bacterial flagellin N-terminal helical region Afer_0210 PF02623 FliW protein Afer_0211 PF02599 Global regulator protein family Afer_0212 PF01584 CheW-like domain Afer_0212 PF01627 Hpt domain Afer_0212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0212 PF02895 Signal transducing histidine kinase, homodimeric domain Afer_0213 PF01584 CheW-like domain Afer_0214 PF00072 Response regulator receiver domain Afer_0214 PF01339 CheB methylesterase Afer_0215 PF01739 CheR methyltransferase, SAM binding domain Afer_0216 PF00392 Bacterial regulatory proteins, gntR family Afer_0216 PF07729 FCD domain Afer_0217 PF00072 Response regulator receiver domain Afer_0220 PF00535 Glycosyl transferase family 2 Afer_0221 PF03575 Peptidase family S51 Afer_0222 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Afer_0222 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Afer_0223 PF01642 Methylmalonyl-CoA mutase Afer_0223 PF02310 B12 binding domain Afer_0224 PF00990 GGDEF domain Afer_0225 PF01202 Shikimate kinase Afer_0226 PF07884 Vitamin K epoxide reductase family Afer_0227 PF06053 Afer_0227 Afer_0228 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease Afer_0229 PF00892 EamA-like transporter family Afer_0230 PF02632 BioY family Afer_0231 PF01039 Carboxyl transferase domain Afer_0232 PF01425 Amidase Afer_0233 PF01546 Peptidase family M20/M25/M40 Afer_0233 PF07687 Peptidase dimerisation domain Afer_0234 PF01883 Domain of unknown function DUF59 Afer_0234 PF10609 ParA/MinD ATPase like Afer_0235 PF00293 NUDIX domain Afer_0236 PF00072 Response regulator receiver domain Afer_0237 PF02374 Anion-transporting ATPase Afer_0238 PF02374 Anion-transporting ATPase Afer_0239 PF02467 Afer_0239 Afer_0240 PF01521 Iron-sulphur cluster biosynthesis Afer_0241 PF00486 Transcriptional regulatory protein, C terminal Afer_0242 PF00120 Glutamine synthetase, catalytic domain Afer_0242 PF03951 Glutamine synthetase, beta-Grasp domain Afer_0243 PF00120 Glutamine synthetase, catalytic domain Afer_0243 PF03951 Glutamine synthetase, beta-Grasp domain Afer_0244 PF01936 NYN domain Afer_0246 PF00795 Carbon-nitrogen hydrolase Afer_0246 PF02540 NAD synthase Afer_0248 PF00140 Sigma-70 factor, region 1 Afer_0248 PF04539 Sigma-70 region 3 Afer_0248 PF04542 Sigma-70 region 2 Afer_0248 PF04545 Sigma-70, region 4 Afer_0249 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Afer_0249 PF01488 Shikimate / quinate 5-dehydrogenase Afer_0249 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Afer_0250 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Afer_0250 PF03900 Porphobilinogen deaminase, C-terminal domain Afer_0251 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0251 PF02602 Uroporphyrinogen-III synthase HemD Afer_0252 PF00490 Delta-aminolevulinic acid dehydratase Afer_0253 PF00202 Aminotransferase class-III Afer_0254 PF00654 Voltage gated chloride channel Afer_0255 PF00378 Enoyl-CoA hydratase/isomerase family Afer_0256 PF00149 Calcineurin-like phosphoesterase Afer_0257 PF13561 Enoyl-(Acyl carrier protein) reductase Afer_0258 PF00454 Phosphatidylinositol 3- and 4-kinase Afer_0259 PF11290 Afer_0259 Afer_0260 PF00300 Histidine phosphatase superfamily (branch 1) Afer_0261 PF00108 Thiolase, N-terminal domain Afer_0261 PF02803 Thiolase, C-terminal domain Afer_0262 PF00578 AhpC/TSA family Afer_0264 PF02585 GlcNAc-PI de-N-acetylase Afer_0265 PF00107 Zinc-binding dehydrogenase Afer_0265 PF08240 Alcohol dehydrogenase GroES-like domain Afer_0266 PF00248 Aldo/keto reductase family Afer_0267 PF08241 Methyltransferase domain Afer_0269 PF00291 Pyridoxal-phosphate dependent enzyme Afer_0270 PF00005 ABC transporter Afer_0270 PF00664 ABC transporter transmembrane region Afer_0271 PF00881 Nitroreductase family Afer_0272 PF05088 Afer_0272 Afer_0273 PF00491 Arginase family Afer_0274 PF07883 Cupin domain Afer_0274 PF13560 Helix-turn-helix domain Afer_0276 PF07758 Afer_0276 Afer_0277 PF00665 Integrase core domain Afer_0277 PF13276 Afer_0277 Afer_0278 PF01527 Transposase Afer_0282 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain Afer_0283 PF10604 Polyketide cyclase / dehydrase and lipid transport Afer_0284 PF13515 Afer_0284 Afer_0285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Afer_0286 PF00270 DEAD/DEAH box helicase Afer_0286 PF00271 Helicase conserved C-terminal domain Afer_0287 PF04299 Putative FMN-binding domain Afer_0289 PF00378 Enoyl-CoA hydratase/isomerase family Afer_0290 PF00582 Universal stress protein family Afer_0291 PF00122 E1-E2 ATPase Afer_0291 PF00690 Cation transporter/ATPase, N-terminus Afer_0291 PF00702 haloacid dehalogenase-like hydrolase Afer_0292 PF00582 Universal stress protein family Afer_0293 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_0293 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0294 PF01475 Ferric uptake regulator family Afer_0295 PF00141 Peroxidase Afer_0296 PF01906 Putative heavy-metal-binding Afer_0297 PF05977 Transmembrane secretion effector Afer_0298 PF00877 NlpC/P60 family Afer_0299 PF06114 Domain of unknown function (DUF955) Afer_0300 PF01061 Afer_0300 Afer_0301 PF00665 Integrase core domain Afer_0301 PF13276 Afer_0301 Afer_0302 PF01527 Transposase Afer_0305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_0305 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_0305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_0306 PF01406 tRNA synthetases class I (C) catalytic domain Afer_0306 PF09190 DALR domain Afer_0307 PF00133 tRNA synthetases class I (I, L, M and V) Afer_0307 PF08264 Anticodon-binding domain of tRNA Afer_0308 PF01566 Afer_0308 Afer_0309 PF01022 Bacterial regulatory protein, arsR family Afer_0312 PF00890 FAD binding domain Afer_0312 PF02910 Fumarate reductase flavoprotein C-term Afer_0313 PF13085 2Fe-2S iron-sulfur cluster binding domain Afer_0313 PF13237 4Fe-4S dicluster domain Afer_0315 PF10708 Afer_0315 Afer_0317 PF02467 Afer_0317 Afer_0318 PF02310 B12 binding domain Afer_0319 PF00549 CoA-ligase Afer_0319 PF08442 ATP-grasp domain Afer_0320 PF00549 CoA-ligase Afer_0320 PF02629 CoA binding domain Afer_0321 PF00551 Formyl transferase Afer_0322 PF01808 AICARFT/IMPCHase bienzyme Afer_0322 PF02142 MGS-like domain Afer_0323 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Afer_0323 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Afer_0324 PF02219 Methylenetetrahydrofolate reductase Afer_0325 PF00083 Sugar (and other) transporter Afer_0328 PF02467 Afer_0328 Afer_0329 PF07837 Formiminotransferase domain, N-terminal subdomain Afer_0330 PF00440 Bacterial regulatory proteins, tetR family Afer_0331 PF16363 Afer_0331 Afer_0332 PF00005 ABC transporter Afer_0333 PF03379 Afer_0333 Afer_0334 PF01578 Afer_0334 Afer_0336 PF03100 CcmE Afer_0337 PF01578 Afer_0337 Afer_0337 PF16327 Afer_0337 Afer_0338 PF00578 AhpC/TSA family Afer_0339 PF03918 Cytochrome C biogenesis protein Afer_0340 PF00174 Oxidoreductase molybdopterin binding domain Afer_0341 PF00083 Sugar (and other) transporter Afer_0342 PF00072 Response regulator receiver domain Afer_0342 PF00196 Bacterial regulatory proteins, luxR family Afer_0344 PF01061 Afer_0344 Afer_0345 PF00005 ABC transporter Afer_0346 PF12840 Helix-turn-helix domain Afer_0347 PF10609 ParA/MinD ATPase like Afer_0348 PF11305 Afer_0348 Afer_0349 PF02374 Anion-transporting ATPase Afer_0350 PF02374 Anion-transporting ATPase Afer_0352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0352 PF07568 Afer_0352 Afer_0352 PF12282 Signal transduction histidine kinase Afer_0353 PF01012 Electron transfer flavoprotein domain Afer_0354 PF00766 Electron transfer flavoprotein FAD-binding domain Afer_0354 PF01012 Electron transfer flavoprotein domain Afer_0355 PF09055 Nickel-containing superoxide dismutase Afer_0357 PF03807 NADP oxidoreductase coenzyme F420-dependent Afer_0357 PF14748 Pyrroline-5-carboxylate reductase dimerisation Afer_0358 PF00534 Glycosyl transferases group 1 Afer_0358 PF13439 Glycosyltransferase Family 4 Afer_0360 PF06202 Amylo-alpha-1,6-glucosidase Afer_0360 PF14742 Afer_0360 Afer_0361 PF00534 Glycosyl transferases group 1 Afer_0361 PF13439 Glycosyltransferase Family 4 Afer_0362 PF01494 FAD binding domain Afer_0363 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Afer_0364 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Afer_0365 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Afer_0366 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Afer_0367 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin Afer_0368 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Afer_0368 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Afer_0369 PF00384 Molybdopterin oxidoreductase Afer_0369 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Afer_0369 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Afer_0369 PF13510 2Fe-2S iron-sulfur cluster binding domain Afer_0370 PF00146 NADH dehydrogenase Afer_0371 PF12838 4Fe-4S dicluster domain Afer_0372 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Afer_0373 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Afer_0374 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Afer_0374 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Afer_0375 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Afer_0376 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains Afer_0377 PF13561 Enoyl-(Acyl carrier protein) reductase Afer_0378 PF09924 Uncharacterized conserved protein (DUF2156) Afer_0379 PF04461 Protein of unknown function (DUF520) Afer_0381 PF00730 HhH-GPD superfamily base excision DNA repair protein Afer_0382 PF13420 Acetyltransferase (GNAT) domain Afer_0383 PF00471 Ribosomal protein L33 Afer_0384 PF04542 Sigma-70 region 2 Afer_0384 PF08281 Sigma-70, region 4 Afer_0385 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Afer_0386 PF02357 Transcription termination factor nusG Afer_0387 PF00298 Ribosomal protein L11, RNA binding domain Afer_0387 PF03946 Ribosomal protein L11, N-terminal domain Afer_0388 PF00687 Ribosomal protein L1p/L10e family Afer_0389 PF00466 Ribosomal protein L10 Afer_0390 PF00542 Ribosomal protein L7/L12 C-terminal domain Afer_0390 PF16320 Afer_0390 Afer_0391 PF00562 RNA polymerase Rpb2, domain 6 Afer_0391 PF04560 RNA polymerase Rpb2, domain 7 Afer_0391 PF04561 RNA polymerase Rpb2, domain 2 Afer_0391 PF04563 RNA polymerase beta subunit Afer_0391 PF04565 RNA polymerase Rpb2, domain 3 Afer_0391 PF10385 RNA polymerase beta subunit external 1 domain Afer_0392 PF00623 RNA polymerase Rpb1, domain 2 Afer_0392 PF04983 RNA polymerase Rpb1, domain 3 Afer_0392 PF04997 RNA polymerase Rpb1, domain 1 Afer_0392 PF04998 RNA polymerase Rpb1, domain 5 Afer_0392 PF05000 RNA polymerase Rpb1, domain 4 Afer_0393 PF00164 Ribosomal protein S12/S23 Afer_0394 PF00177 Ribosomal protein S7p/S5e Afer_0395 PF00009 Elongation factor Tu GTP binding domain Afer_0395 PF00679 Elongation factor G C-terminus Afer_0395 PF03144 Elongation factor Tu domain 2 Afer_0395 PF03764 Elongation factor G, domain IV Afer_0395 PF14492 Elongation Factor G, domain II Afer_0396 PF00009 Elongation factor Tu GTP binding domain Afer_0396 PF03143 Elongation factor Tu C-terminal domain Afer_0396 PF03144 Elongation factor Tu domain 2 Afer_0397 PF00338 Ribosomal protein S10p/S20e Afer_0398 PF00297 Ribosomal protein L3 Afer_0399 PF00573 Ribosomal protein L4/L1 family Afer_0400 PF00276 Ribosomal protein L23 Afer_0401 PF00181 Ribosomal Proteins L2, RNA binding domain Afer_0401 PF03947 Ribosomal Proteins L2, C-terminal domain Afer_0402 PF00203 Ribosomal protein S19 Afer_0403 PF00237 Ribosomal protein L22p/L17e Afer_0404 PF00189 Ribosomal protein S3, C-terminal domain Afer_0404 PF07650 KH domain Afer_0405 PF00252 Ribosomal protein L16p/L10e Afer_0406 PF00831 Ribosomal L29 protein Afer_0407 PF00366 Ribosomal protein S17 Afer_0408 PF00238 Ribosomal protein L14p/L23e Afer_0409 PF17136 Afer_0409 Afer_0410 PF00281 Ribosomal protein L5 Afer_0410 PF00673 ribosomal L5P family C-terminus Afer_0411 PF00253 Ribosomal protein S14p/S29e Afer_0412 PF00410 Ribosomal protein S8 Afer_0413 PF00347 Ribosomal protein L6 Afer_0414 PF00861 Ribosomal L18p/L5e family Afer_0415 PF00333 Ribosomal protein S5, N-terminal domain Afer_0415 PF03719 Ribosomal protein S5, C-terminal domain Afer_0416 PF00327 Ribosomal protein L30p/L7e Afer_0417 PF00828 Ribosomal protein L18e/L15 Afer_0418 PF00344 SecY translocase Afer_0419 PF00406 Adenylate kinase Afer_0419 PF05191 Adenylate kinase, active site lid Afer_0420 PF00557 Metallopeptidase family M24 Afer_0421 PF01176 Translation initiation factor 1A / IF-1 Afer_0422 PF00444 Ribosomal protein L36 Afer_0423 PF00416 Ribosomal protein S13/S18 Afer_0424 PF00411 Ribosomal protein S11 Afer_0425 PF00163 Ribosomal protein S4/S9 N-terminal domain Afer_0425 PF01479 S4 domain Afer_0426 PF01000 RNA polymerase Rpb3/RpoA insert domain Afer_0426 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Afer_0426 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Afer_0427 PF01196 Ribosomal protein L17 Afer_0428 PF01416 tRNA pseudouridine synthase Afer_0429 PF00572 Ribosomal protein L13 Afer_0430 PF00380 Ribosomal protein S9/S16 Afer_0431 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Afer_0431 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Afer_0431 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Afer_0431 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Afer_0432 PF01380 SIS domain Afer_0432 PF13522 Glutamine amidotransferase domain Afer_0433 PF03595 Voltage-dependent anion channel Afer_0434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Afer_0434 PF03466 LysR substrate binding domain Afer_0435 PF01648 4'-phosphopantetheinyl transferase superfamily Afer_0436 PF01256 Carbohydrate kinase Afer_0436 PF03853 YjeF-related protein N-terminus Afer_0437 PF00842 Alanine racemase, C-terminal domain Afer_0437 PF01168 Alanine racemase, N-terminal domain Afer_0438 PF03167 Uracil DNA glycosylase superfamily Afer_0439 PF02367 Uncharacterised P-loop hydrolase UPF0079 Afer_0440 PF00814 Glycoprotease family Afer_0441 PF00583 Acetyltransferase (GNAT) family Afer_0442 PF00814 Glycoprotease family Afer_0443 PF00166 Chaperonin 10 Kd subunit Afer_0444 PF00118 TCP-1/cpn60 chaperonin family Afer_0445 PF06897 Afer_0445 Afer_0446 PF01527 Transposase Afer_0447 PF00665 Integrase core domain Afer_0447 PF13276 Afer_0447 Afer_0452 PF04203 Sortase family Afer_0453 PF00293 NUDIX domain Afer_0454 PF13622 Thioesterase-like superfamily Afer_0455 PF02537 Afer_0455 Afer_0456 PF02641 Uncharacterized ACR, COG1993 Afer_0457 PF02537 Afer_0457 Afer_0459 PF00478 IMP dehydrogenase / GMP reductase domain Afer_0460 PF00117 Glutamine amidotransferase class-I Afer_0460 PF00958 GMP synthase C terminal domain Afer_0461 PF00580 UvrD/REP helicase N-terminal domain Afer_0461 PF13361 UvrD-like helicase C-terminal domain Afer_0462 PF01370 NAD dependent epimerase/dehydratase family Afer_0464 PF13641 Glycosyltransferase like family 2 Afer_0469 PF00494 Squalene/phytoene synthase Afer_0470 PF01593 Flavin containing amine oxidoreductase Afer_0471 PF00348 Polyprenyl synthetase Afer_0472 PF01523 Putative modulator of DNA gyrase Afer_0473 PF01523 Putative modulator of DNA gyrase Afer_0474 PF13263 PHP-associated Afer_0475 PF00571 CBS domain Afer_0475 PF03448 MgtE intracellular N domain Afer_0476 PF01566 Afer_0476 Afer_0477 PF13649 Methyltransferase domain Afer_0478 PF02586 Uncharacterised ACR, COG2135 Afer_0479 PF02779 Transketolase, pyrimidine binding domain Afer_0479 PF02780 Transketolase, C-terminal domain Afer_0479 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Afer_0482 PF04116 Afer_0482 Afer_0483 PF01965 DJ-1/PfpI family Afer_0485 PF04073 Aminoacyl-tRNA editing domain Afer_0486 PF00994 Probable molybdopterin binding domain Afer_0486 PF03453 MoeA N-terminal region (domain I and II) Afer_0486 PF03454 MoeA C-terminal region (domain IV) Afer_0487 PF00483 Nucleotidyl transferase Afer_0488 PF09723 Afer_0488 Afer_0489 PF13439 Glycosyltransferase Family 4 Afer_0489 PF13692 Glycosyl transferases group 1 Afer_0490 PF08241 Methyltransferase domain Afer_0492 PF13578 Methyltransferase domain Afer_0493 PF01433 Peptidase family M1 Afer_0493 PF11838 ERAP1-like C-terminal domain Afer_0494 PF00294 pfkB family carbohydrate kinase Afer_0495 PF00723 Glycosyl hydrolases family 15 Afer_0496 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Afer_0496 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Afer_0497 PF00480 ROK family Afer_0498 PF07690 Major Facilitator Superfamily Afer_0499 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Afer_0500 PF00266 Aminotransferase class-V Afer_0501 PF10027 Afer_0501 Afer_0503 PF13458 Periplasmic binding protein Afer_0504 PF00005 ABC transporter Afer_0505 PF00005 ABC transporter Afer_0505 PF12399 Branched-chain amino acid ATP-binding cassette transporter Afer_0506 PF02653 Afer_0506 Afer_0507 PF02653 Afer_0507 Afer_0508 PF00072 Response regulator receiver domain Afer_0508 PF09339 IclR helix-turn-helix domain Afer_0509 PF01527 Transposase Afer_0510 PF00665 Integrase core domain Afer_0510 PF13276 Afer_0510 Afer_0511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0519 PF00665 Integrase core domain Afer_0519 PF13276 Afer_0519 Afer_0520 PF01527 Transposase Afer_0521 PF04185 Phosphoesterase family Afer_0522 PF00005 ABC transporter Afer_0523 PF00005 ABC transporter Afer_0524 PF02322 Afer_0524 Afer_0525 PF01654 Afer_0525 Afer_0527 PF00398 Ribosomal RNA adenine dimethylase Afer_0528 PF01026 TatD related DNase Afer_0529 PF09334 tRNA synthetases class I (M) Afer_0530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0532 PF01926 50S ribosome-binding GTPase Afer_0532 PF06071 Protein of unknown function (DUF933) Afer_0533 PF00004 ATPase family associated with various cellular activities (AAA) Afer_0533 PF12002 MgsA AAA+ ATPase C terminal Afer_0533 PF16193 Afer_0533 Afer_0534 PF00152 tRNA synthetases class II (D, K and N) Afer_0534 PF01336 OB-fold nucleic acid binding domain Afer_0534 PF02938 GAD domain Afer_0535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0536 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Afer_0537 PF02654 Afer_0537 Afer_0538 PF03186 Afer_0538 Afer_0539 PF01894 Uncharacterised protein family UPF0047 Afer_0540 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Afer_0541 PF13464 Afer_0541 Afer_0542 PF00326 Prolyl oligopeptidase family Afer_0542 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Afer_0543 PF01458 Uncharacterized protein family (UPF0051) Afer_0545 PF10722 Putative bacterial sensory transduction regulator Afer_0550 PF01527 Transposase Afer_0554 PF04471 Restriction endonuclease Afer_0554 PF14338 Afer_0554 Afer_0556 PF08044 Afer_0556 Afer_0557 PF00512 His Kinase A (phospho-acceptor) domain Afer_0557 PF00672 HAMP domain Afer_0557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0558 PF00072 Response regulator receiver domain Afer_0558 PF00486 Transcriptional regulatory protein, C terminal Afer_0559 PF13180 PDZ domain Afer_0559 PF13365 Trypsin-like peptidase domain Afer_0560 PF00378 Enoyl-CoA hydratase/isomerase family Afer_0561 PF01458 Uncharacterized protein family (UPF0051) Afer_0562 PF00355 Rieske [2Fe-2S] domain Afer_0563 PF00005 ABC transporter Afer_0564 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0564 PF14759 Reductase C-terminal Afer_0565 PF13370 4Fe-4S single cluster domain Afer_0566 PF00005 ABC transporter Afer_0567 PF00266 Aminotransferase class-V Afer_0568 PF01592 NifU-like N terminal domain Afer_0571 PF13191 AAA ATPase domain Afer_0572 PF02595 Glycerate kinase family Afer_0573 PF00171 Aldehyde dehydrogenase family Afer_0574 PF01037 AsnC family Afer_0574 PF13404 AsnC-type helix-turn-helix domain Afer_0575 PF00202 Aminotransferase class-III Afer_0576 PF08751 TrwC relaxase Afer_0577 PF09678 Afer_0577 Afer_0578 PF00009 Elongation factor Tu GTP binding domain Afer_0578 PF00679 Elongation factor G C-terminus Afer_0578 PF03144 Elongation factor Tu domain 2 Afer_0580 PF03706 Afer_0580 Afer_0581 PF01593 Flavin containing amine oxidoreductase Afer_0582 PF01039 Carboxyl transferase domain Afer_0583 PF13280 Afer_0583 Afer_0584 PF01243 Pyridoxamine 5'-phosphate oxidase Afer_0585 PF01047 MarR family Afer_0586 PF03176 MMPL family Afer_0587 PF00378 Enoyl-CoA hydratase/isomerase family Afer_0588 PF00501 AMP-binding enzyme Afer_0588 PF13193 AMP-binding enzyme C-terminal domain Afer_0589 PF02585 GlcNAc-PI de-N-acetylase Afer_0590 PF01983 Guanylyl transferase CofC like Afer_0591 PF01351 Ribonuclease HII Afer_0592 PF00892 EamA-like transporter family Afer_0597 PF12697 Alpha/beta hydrolase family Afer_0598 PF02875 Mur ligase family, glutamate ligase domain Afer_0598 PF08245 Mur ligase middle domain Afer_0599 PF01820 D-ala D-ala ligase N-terminus Afer_0599 PF07478 D-ala D-ala ligase C-terminus Afer_0600 PF03703 Afer_0600 Afer_0600 PF09851 Afer_0600 Afer_0601 PF08241 Methyltransferase domain Afer_0602 PF00561 alpha/beta hydrolase fold Afer_0603 PF02515 CoA-transferase family III Afer_0604 PF12696 TraM recognition site of TraD and TraG Afer_0605 PF02254 TrkA-N domain Afer_0605 PF07885 Ion channel Afer_0607 PF13302 Acetyltransferase (GNAT) domain Afer_0608 PF07722 Peptidase C26 Afer_0609 PF13419 Haloacid dehalogenase-like hydrolase Afer_0610 PF00717 Peptidase S24-like Afer_0612 PF01804 Penicillin amidase Afer_0614 PF09995 Afer_0614 Afer_0615 PF08282 haloacid dehalogenase-like hydrolase Afer_0617 PF00459 Inositol monophosphatase family Afer_0618 PF00583 Acetyltransferase (GNAT) family Afer_0619 PF14267 Afer_0619 Afer_0621 PF00892 EamA-like transporter family Afer_0622 PF00390 Malic enzyme, N-terminal domain Afer_0622 PF03949 Malic enzyme, NAD binding domain Afer_0624 PF00589 Phage integrase family Afer_0624 PF02899 Phage integrase, N-terminal SAM-like domain Afer_0625 PF04539 Sigma-70 region 3 Afer_0625 PF04542 Sigma-70 region 2 Afer_0625 PF04545 Sigma-70, region 4 Afer_0626 PF00318 Ribosomal protein S2 Afer_0627 PF00889 Elongation factor TS Afer_0628 PF00696 Amino acid kinase family Afer_0629 PF01765 Ribosome recycling factor Afer_0630 PF01148 Cytidylyltransferase family Afer_0631 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Afer_0631 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Afer_0631 PF13288 DXP reductoisomerase C-terminal domain Afer_0632 PF02163 Peptidase family M50 Afer_0633 PF04551 GcpE protein Afer_0634 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Afer_0634 PF03129 Anticodon binding domain Afer_0634 PF04073 Aminoacyl-tRNA editing domain Afer_0636 PF00575 S1 RNA binding domain Afer_0636 PF08529 NusA N-terminal domain Afer_0636 PF13184 NusA-like KH domain Afer_0637 PF04296 Protein of unknown function (DUF448) Afer_0638 PF00009 Elongation factor Tu GTP binding domain Afer_0638 PF03144 Elongation factor Tu domain 2 Afer_0638 PF04760 Translation initiation factor IF-2, N-terminal region Afer_0638 PF11987 Translation-initiation factor 2 Afer_0639 PF02033 Ribosome-binding factor A Afer_0640 PF01509 TruB family pseudouridylate synthase (N terminal domain) Afer_0640 PF09157 Pseudouridine synthase II TruB, C-terminal Afer_0640 PF16198 Afer_0640 Afer_0641 PF01687 Riboflavin kinase Afer_0641 PF06574 FAD synthetase Afer_0642 PF00312 Ribosomal protein S15 Afer_0643 PF00013 KH domain Afer_0643 PF00575 S1 RNA binding domain Afer_0643 PF01138 3' exoribonuclease family, domain 1 Afer_0643 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Afer_0644 PF00459 Inositol monophosphatase family Afer_0645 PF01113 Dihydrodipicolinate reductase, N-terminus Afer_0645 PF05173 Dihydrodipicolinate reductase, C-terminus Afer_0646 PF00701 Dihydrodipicolinate synthetase family Afer_0647 PF00753 Metallo-beta-lactamase superfamily Afer_0647 PF07521 RNA-metabolising metallo-beta-lactamase Afer_0648 PF01580 FtsK/SpoIIIE family Afer_0648 PF09397 Ftsk gamma domain Afer_0648 PF13491 Afer_0648 Afer_0649 PF00768 D-alanyl-D-alanine carboxypeptidase Afer_0650 PF00288 GHMP kinases N terminal domain Afer_0650 PF08544 GHMP kinases C terminal Afer_0651 PF01066 CDP-alcohol phosphatidyltransferase Afer_0652 PF00994 Probable molybdopterin binding domain Afer_0652 PF02464 Competence-damaged protein Afer_0653 PF00154 recA bacterial DNA recombination protein Afer_0654 PF00919 Uncharacterized protein family UPF0004 Afer_0654 PF01938 TRAM domain Afer_0654 PF04055 Radical SAM superfamily Afer_0655 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Afer_0655 PF13378 Enolase C-terminal domain-like Afer_0656 PF01715 IPP transferase Afer_0657 PF01678 Diaminopimelate epimerase Afer_0658 PF01926 50S ribosome-binding GTPase Afer_0658 PF13167 Afer_0658 Afer_0658 PF16360 Afer_0658 Afer_0659 PF00155 Aminotransferase class I and II Afer_0660 PF00132 Bacterial transferase hexapeptide (six repeats) Afer_0660 PF14602 Hexapeptide repeat of succinyl-transferase Afer_0660 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Afer_0661 PF01546 Peptidase family M20/M25/M40 Afer_0661 PF07687 Peptidase dimerisation domain Afer_0662 PF00665 Integrase core domain Afer_0662 PF13276 Afer_0662 Afer_0663 PF01527 Transposase Afer_0664 PF13551 Winged helix-turn helix Afer_0665 PF09084 NMT1/THI5 like Afer_0666 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0667 PF00005 ABC transporter Afer_0668 PF00717 Peptidase S24-like Afer_0668 PF01726 LexA DNA binding domain Afer_0669 PF03477 ATP cone domain Afer_0670 PF10604 Polyketide cyclase / dehydrase and lipid transport Afer_0673 PF00665 Integrase core domain Afer_0673 PF13276 Afer_0673 Afer_0674 PF01527 Transposase Afer_0676 PF01850 PIN domain Afer_0678 PF01527 Transposase Afer_0679 PF01212 Beta-eliminating lyase Afer_0680 PF02585 GlcNAc-PI de-N-acetylase Afer_0682 PF11239 Afer_0682 Afer_0684 PF14279 Afer_0684 Afer_0685 PF04191 Phospholipid methyltransferase Afer_0686 PF09529 Afer_0686 Afer_0687 PF00665 Integrase core domain Afer_0687 PF13276 Afer_0687 Afer_0690 PF01527 Transposase Afer_0691 PF00665 Integrase core domain Afer_0691 PF13276 Afer_0691 Afer_0692 PF00586 AIR synthase related protein, N-terminal domain Afer_0692 PF02769 AIR synthase related protein, C-terminal domain Afer_0693 PF00821 Phosphoenolpyruvate carboxykinase Afer_0693 PF17297 Afer_0693 Afer_0694 PF07690 Major Facilitator Superfamily Afer_0695 PF01243 Pyridoxamine 5'-phosphate oxidase Afer_0696 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_0696 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_0697 PF01019 Gamma-glutamyltranspeptidase Afer_0698 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Afer_0698 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Afer_0699 PF01266 FAD dependent oxidoreductase Afer_0700 PF00202 Aminotransferase class-III Afer_0701 PF09992 Predicted periplasmic protein (DUF2233) Afer_0702 PF00512 His Kinase A (phospho-acceptor) domain Afer_0702 PF00672 HAMP domain Afer_0702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_0703 PF00072 Response regulator receiver domain Afer_0703 PF00486 Transcriptional regulatory protein, C terminal Afer_0704 PF00881 Nitroreductase family Afer_0705 PF00753 Metallo-beta-lactamase superfamily Afer_0707 PF02627 Carboxymuconolactone decarboxylase family Afer_0708 PF02655 ATP-grasp domain Afer_0709 PF08443 RimK-like ATP-grasp domain Afer_0711 PF02581 Thiamine monophosphate synthase/TENI Afer_0712 PF00730 HhH-GPD superfamily base excision DNA repair protein Afer_0713 PF00456 Transketolase, thiamine diphosphate binding domain Afer_0714 PF00075 RNase H Afer_0715 PF00106 short chain dehydrogenase Afer_0716 PF00248 Aldo/keto reductase family Afer_0717 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_0717 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0718 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Afer_0718 PF00364 Biotin-requiring enzyme Afer_0718 PF02817 e3 binding domain Afer_0719 PF03099 Biotin/lipoate A/B protein ligase family Afer_0719 PF04055 Radical SAM superfamily Afer_0720 PF00557 Metallopeptidase family M24 Afer_0720 PF01321 Creatinase/Prolidase N-terminal domain Afer_0721 PF13180 PDZ domain Afer_0721 PF13365 Trypsin-like peptidase domain Afer_0722 PF01923 Cobalamin adenosyltransferase Afer_0723 PF00809 Pterin binding enzyme Afer_0723 PF02310 B12 binding domain Afer_0723 PF02574 Homocysteine S-methyltransferase Afer_0723 PF02607 B12 binding domain Afer_0723 PF02965 Vitamin B12 dependent methionine synthase, activation domain Afer_0724 PF00883 Cytosol aminopeptidase family, catalytic domain Afer_0724 PF02789 Cytosol aminopeptidase family, N-terminal domain Afer_0726 PF01642 Methylmalonyl-CoA mutase Afer_0727 PF01329 Pterin 4 alpha carbinolamine dehydratase Afer_0728 PF00581 Rhodanese-like domain Afer_0728 PF00899 ThiF family Afer_0729 PF00881 Nitroreductase family Afer_0730 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Afer_0730 PF00364 Biotin-requiring enzyme Afer_0730 PF02785 Biotin carboxylase C-terminal domain Afer_0730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Afer_0731 PF03099 Biotin/lipoate A/B protein ligase family Afer_0732 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_0732 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_0732 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_0733 PF00483 Nucleotidyl transferase Afer_0734 PF16363 Afer_0734 Afer_0735 PF04321 RmlD substrate binding domain Afer_0736 PF13641 Glycosyltransferase like family 2 Afer_0738 PF00483 Nucleotidyl transferase Afer_0739 PF16363 Afer_0739 Afer_0740 PF01996 F420-0:Gamma-glutamyl ligase Afer_0741 PF01933 Uncharacterised protein family UPF0052 Afer_0742 PF00534 Glycosyl transferases group 1 Afer_0742 PF13439 Glycosyltransferase Family 4 Afer_0743 PF00534 Glycosyl transferases group 1 Afer_0743 PF13439 Glycosyltransferase Family 4 Afer_0744 PF00534 Glycosyl transferases group 1 Afer_0744 PF13439 Glycosyltransferase Family 4 Afer_0745 PF16363 Afer_0745 Afer_0746 PF13641 Glycosyltransferase like family 2 Afer_0749 PF01872 RibD C-terminal domain Afer_0753 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Afer_0753 PF00672 HAMP domain Afer_0754 PF01323 DSBA-like thioredoxin domain Afer_0755 PF00293 NUDIX domain Afer_0756 PF01569 PAP2 superfamily Afer_0757 PF12705 PD-(D/E)XK nuclease superfamily Afer_0758 PF12697 Alpha/beta hydrolase family Afer_0759 PF09335 Afer_0759 Afer_0760 PF02583 Metal-sensitive transcriptional repressor Afer_0761 PF05697 Bacterial trigger factor protein (TF) Afer_0761 PF05698 Bacterial trigger factor protein (TF) C-terminus Afer_0762 PF00574 Clp protease Afer_0763 PF06689 ClpX C4-type zinc finger Afer_0763 PF07724 AAA domain (Cdc48 subfamily) Afer_0763 PF10431 C-terminal, D2-small domain, of ClpB protein Afer_0764 PF08245 Mur ligase middle domain Afer_0765 PF00334 Nucleoside diphosphate kinase Afer_0766 PF06723 MreB/Mbl protein Afer_0767 PF04085 rod shape-determining protein MreC Afer_0768 PF04093 Afer_0768 Afer_0769 PF00905 Penicillin binding protein transpeptidase domain Afer_0769 PF03717 Penicillin-binding Protein dimerisation domain Afer_0770 PF10150 Ribonuclease E/G family Afer_0771 PF00829 Ribosomal prokaryotic L21 protein Afer_0772 PF01016 Ribosomal L27 protein Afer_0773 PF01018 GTP1/OBG Afer_0773 PF01926 50S ribosome-binding GTPase Afer_0773 PF09269 Domain of unknown function (DUF1967) Afer_0774 PF00696 Amino acid kinase family Afer_0774 PF01472 PUA domain Afer_0776 PF04978 Protein of unknown function (DUF664) Afer_0777 PF00005 ABC transporter Afer_0778 PF00005 ABC transporter Afer_0779 PF02653 Afer_0779 Afer_0780 PF02653 Afer_0780 Afer_0781 PF13458 Periplasmic binding protein Afer_0782 PF00171 Aldehyde dehydrogenase family Afer_0783 PF07728 AAA domain (dynein-related subfamily) Afer_0784 PF05762 VWA domain containing CoxE-like protein Afer_0786 PF01557 Fumarylacetoacetate (FAA) hydrolase family Afer_0788 PF03695 Uncharacterised protein family (UPF0149) Afer_0789 PF02410 Oligomerisation domain Afer_0790 PF01467 Cytidylyltransferase Afer_0791 PF00296 Luciferase-like monooxygenase Afer_0792 PF01474 Class-II DAHP synthetase family Afer_0793 PF07690 Major Facilitator Superfamily Afer_0794 PF11255 Afer_0794 Afer_0796 PF00221 Aromatic amino acid lyase Afer_0797 PF01643 Acyl-ACP thioesterase Afer_0798 PF00501 AMP-binding enzyme Afer_0798 PF13193 AMP-binding enzyme C-terminal domain Afer_0799 PF01903 CbiX Afer_0800 PF02570 Precorrin-8X methylmutase Afer_0802 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0802 PF01890 Cobalamin synthesis G C-terminus Afer_0802 PF11760 Cobalamin synthesis G N-terminal Afer_0803 PF01557 Fumarylacetoacetate (FAA) hydrolase family Afer_0804 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Afer_0805 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Afer_0805 PF07685 CobB/CobQ-like glutamine amidotransferase domain Afer_0806 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0807 PF01888 CbiD Afer_0808 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Afer_0808 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Afer_0809 PF14016 Afer_0809 Afer_0811 PF01431 Peptidase family M13 Afer_0811 PF05649 Peptidase family M13 Afer_0812 PF04209 homogentisate 1,2-dioxygenase Afer_0813 PF00753 Metallo-beta-lactamase superfamily Afer_0814 PF01494 FAD binding domain Afer_0815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Afer_0815 PF07685 CobB/CobQ-like glutamine amidotransferase domain Afer_0816 PF02514 Afer_0816 Afer_0817 PF07728 AAA domain (dynein-related subfamily) Afer_0817 PF13519 von Willebrand factor type A domain Afer_0818 PF03167 Uracil DNA glycosylase superfamily Afer_0820 PF00563 EAL domain Afer_0820 PF00990 GGDEF domain Afer_0821 PF00037 4Fe-4S binding domain Afer_0821 PF00384 Molybdopterin oxidoreductase Afer_0821 PF01568 Molydopterin dinucleotide binding domain Afer_0821 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Afer_0821 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Afer_0821 PF13510 2Fe-2S iron-sulfur cluster binding domain Afer_0823 PF00676 Dehydrogenase E1 component Afer_0824 PF02779 Transketolase, pyrimidine binding domain Afer_0824 PF02780 Transketolase, C-terminal domain Afer_0825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Afer_0825 PF00364 Biotin-requiring enzyme Afer_0825 PF02817 e3 binding domain Afer_0826 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_0826 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0827 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Afer_0828 PF03706 Afer_0828 Afer_0829 PF01594 Afer_0829 Afer_0830 PF06925 Afer_0830 Afer_0830 PF13692 Glycosyl transferases group 1 Afer_0832 PF12146 Putative lysophospholipase Afer_0833 PF02467 Afer_0833 Afer_0834 PF02634 FdhD/NarQ family Afer_0836 PF01988 Afer_0836 Afer_0838 PF00924 Mechanosensitive ion channel Afer_0839 PF01575 MaoC like domain Afer_0840 PF03976 Polyphosphate kinase 2 (PPK2) Afer_0842 PF01209 ubiE/COQ5 methyltransferase family Afer_0843 PF00425 chorismate binding enzyme Afer_0844 PF00005 ABC transporter Afer_0845 PF01541 GIY-YIG catalytic domain Afer_0845 PF02151 UvrB/uvrC motif Afer_0845 PF08459 UvrC Helix-hairpin-helix N-terminal Afer_0846 PF08241 Methyltransferase domain Afer_0847 PF03668 Afer_0847 Afer_0848 PF01933 Uncharacterised protein family UPF0052 Afer_0849 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Afer_0849 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Afer_0850 PF00162 Phosphoglycerate kinase Afer_0851 PF00121 Triosephosphate isomerase Afer_0852 PF03840 Preprotein translocase SecG subunit Afer_0853 PF08448 PAS fold Afer_0854 PF08668 HDOD domain Afer_0855 PF03734 L,D-transpeptidase catalytic domain Afer_0856 PF01914 Afer_0856 Afer_0858 PF01545 Cation efflux family Afer_0859 PF00578 AhpC/TSA family Afer_0859 PF10417 C-terminal domain of 1-Cys peroxiredoxin Afer_0860 PF00296 Luciferase-like monooxygenase Afer_0861 PF00535 Glycosyl transferase family 2 Afer_0863 PF00929 Exonuclease Afer_0864 PF00535 Glycosyl transferase family 2 Afer_0865 PF00692 dUTPase Afer_0867 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Afer_0868 PF07681 Afer_0868 Afer_0870 PF00069 Protein kinase domain Afer_0871 PF00120 Glutamine synthetase, catalytic domain Afer_0872 PF13520 Amino acid permease Afer_0873 PF13672 Protein phosphatase 2C Afer_0874 PF00391 PEP-utilising enzyme, mobile domain Afer_0874 PF02896 PEP-utilising enzyme, TIM barrel domain Afer_0874 PF05524 PEP-utilising enzyme, N-terminal Afer_0875 PF00230 Major intrinsic protein Afer_0876 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Afer_0876 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Afer_0877 PF02733 Dak1 domain Afer_0878 PF02734 DAK2 domain Afer_0879 PF03610 PTS system fructose IIA component Afer_0880 PF01266 FAD dependent oxidoreductase Afer_0882 PF02754 Afer_0882 Afer_0882 PF13183 4Fe-4S dicluster domain Afer_0883 PF04309 Glycerol-3-phosphate responsive antiterminator Afer_0884 PF00381 PTS HPr component phosphorylation site Afer_0885 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0885 PF12911 Afer_0885 Afer_0886 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Afer_0887 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0888 PF00528 Binding-protein-dependent transport system inner membrane component Afer_0888 PF12911 Afer_0888 Afer_0889 PF01266 FAD dependent oxidoreductase Afer_0890 PF00005 ABC transporter Afer_0890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Afer_0891 PF01757 Afer_0891 Afer_0892 PF00588 SpoU rRNA Methylase family Afer_0892 PF08032 RNA 2'-O ribose methyltransferase substrate binding Afer_0893 PF05235 CHAD domain Afer_0894 PF13242 HAD-hyrolase-like Afer_0894 PF13344 Haloacid dehalogenase-like hydrolase Afer_0895 PF01791 DeoC/LacD family aldolase Afer_0899 PF03641 Possible lysine decarboxylase Afer_0900 PF04055 Radical SAM superfamily Afer_0901 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Afer_0902 PF07332 Afer_0902 Afer_0905 PF08704 tRNA methyltransferase complex GCD14 subunit Afer_0906 PF13459 4Fe-4S single cluster domain Afer_0907 PF00004 ATPase family associated with various cellular activities (AAA) Afer_0907 PF16450 Afer_0907 Afer_0908 PF03136 Pup-ligase protein Afer_0909 PF05639 Pup-like protein Afer_0910 PF00227 Proteasome subunit Afer_0911 PF00227 Proteasome subunit Afer_0912 PF03136 Pup-ligase protein Afer_0913 PF10502 Signal peptidase, peptidase S26 Afer_0915 PF00579 tRNA synthetases class I (W and Y) Afer_0916 PF02416 mttA/Hcf106 family Afer_0917 PF00902 Sec-independent protein translocase protein (TatC) Afer_0918 PF00270 DEAD/DEAH box helicase Afer_0918 PF00271 Helicase conserved C-terminal domain Afer_0918 PF08148 DSHCT (NUC185) domain Afer_0919 PF02511 Thymidylate synthase complementing protein Afer_0922 PF00293 NUDIX domain Afer_0923 PF00583 Acetyltransferase (GNAT) family Afer_0927 PF01453 D-mannose binding lectin Afer_0935 PF00175 Oxidoreductase NAD-binding domain Afer_0935 PF00970 Oxidoreductase FAD-binding domain Afer_0937 PF00534 Glycosyl transferases group 1 Afer_0937 PF13439 Glycosyltransferase Family 4 Afer_0938 PF03364 Polyketide cyclase / dehydrase and lipid transport Afer_0939 PF00155 Aminotransferase class I and II Afer_0940 PF00155 Aminotransferase class I and II Afer_0940 PF00392 Bacterial regulatory proteins, gntR family Afer_0941 PF00202 Aminotransferase class-III Afer_0942 PF00171 Aldehyde dehydrogenase family Afer_0943 PF02547 Queuosine biosynthesis protein Afer_0944 PF01702 Queuine tRNA-ribosyltransferase Afer_0945 PF02355 Protein export membrane protein Afer_0946 PF02355 Protein export membrane protein Afer_0946 PF07549 SecD/SecF GG Motif Afer_0947 PF02824 TGS domain Afer_0947 PF04607 Region found in RelA / SpoT proteins Afer_0947 PF13291 ACT domain Afer_0947 PF13328 HD domain Afer_0948 PF13520 Amino acid permease Afer_0951 PF01411 tRNA synthetases class II (A) Afer_0951 PF02272 DHHA1 domain Afer_0951 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Afer_0952 PF03652 Uncharacterised protein family (UPF0081) Afer_0953 PF02618 YceG-like family Afer_0954 PF01488 Shikimate / quinate 5-dehydrogenase Afer_0954 PF08501 Shikimate dehydrogenase substrate binding domain Afer_0955 PF04012 Afer_0955 Afer_0956 PF01098 Afer_0956 Afer_0957 PF02577 Bifunctional nuclease Afer_0958 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Afer_0958 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Afer_0959 PF00890 FAD binding domain Afer_0960 PF02445 Quinolinate synthetase A protein Afer_0962 PF01206 Sulfurtransferase TusA Afer_0963 PF02635 DsrE/DsrF-like family Afer_0964 PF13183 4Fe-4S dicluster domain Afer_0965 PF02754 Afer_0965 Afer_0966 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_0968 PF02754 Afer_0968 Afer_0968 PF13187 4Fe-4S dicluster domain Afer_0969 PF01012 Electron transfer flavoprotein domain Afer_0970 PF00766 Electron transfer flavoprotein FAD-binding domain Afer_0970 PF01012 Electron transfer flavoprotein domain Afer_0971 PF02665 Nitrate reductase gamma subunit Afer_0971 PF02754 Afer_0971 Afer_0971 PF13183 4Fe-4S dicluster domain Afer_0973 PF01597 Glycine cleavage H-protein Afer_0974 PF01597 Glycine cleavage H-protein Afer_0976 PF13686 DsrE/DsrF/DrsH-like family Afer_0977 PF00355 Rieske [2Fe-2S] domain Afer_0978 PF00665 Integrase core domain Afer_0978 PF13276 Afer_0978 Afer_0979 PF00665 Integrase core domain Afer_0979 PF13276 Afer_0979 Afer_0980 PF01527 Transposase Afer_0981 PF01527 Transposase Afer_0982 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) Afer_0983 PF01867 CRISPR associated protein Cas1 Afer_0984 PF08798 CRISPR associated protein Afer_0985 PF09704 CRISPR-associated protein (Cas_Cas5) Afer_0986 PF09344 CT1975-like protein Afer_0987 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) Afer_0988 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) Afer_0989 PF00270 DEAD/DEAH box helicase Afer_0992 PF00005 ABC transporter Afer_0993 PF02653 Afer_0993 Afer_0994 PF13407 Periplasmic binding protein domain Afer_0995 PF00356 Bacterial regulatory proteins, lacI family Afer_0995 PF13377 Periplasmic binding protein-like domain Afer_0996 PF00294 pfkB family carbohydrate kinase Afer_0997 PF13459 4Fe-4S single cluster domain Afer_0998 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Afer_0998 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Afer_1000 PF02424 ApbE family Afer_1003 PF01098 Afer_1003 Afer_1004 PF02503 Polyphosphate kinase middle domain Afer_1004 PF13089 Polyphosphate kinase N-terminal domain Afer_1004 PF13090 Polyphosphate kinase C-terminal domain Afer_1005 PF01928 CYTH domain Afer_1006 PF01966 HD domain Afer_1006 PF02541 Ppx/GppA phosphatase family Afer_1007 PF01565 FAD binding domain Afer_1007 PF02913 FAD linked oxidases, C-terminal domain Afer_1008 PF00342 Phosphoglucose isomerase Afer_1009 PF00923 Transaldolase Afer_1010 PF00107 Zinc-binding dehydrogenase Afer_1011 PF01121 Dephospho-CoA kinase Afer_1012 PF08668 HDOD domain Afer_1013 PF00271 Helicase conserved C-terminal domain Afer_1013 PF02151 UvrB/uvrC motif Afer_1013 PF04851 Type III restriction enzyme, res subunit Afer_1013 PF12344 Ultra-violet resistance protein B Afer_1014 PF00581 Rhodanese-like domain Afer_1014 PF00753 Metallo-beta-lactamase superfamily Afer_1015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Afer_1016 PF02635 DsrE/DsrF-like family Afer_1017 PF04138 Afer_1017 Afer_1018 PF01370 NAD dependent epimerase/dehydratase family Afer_1019 PF02613 Nitrate reductase delta subunit Afer_1020 PF00384 Molybdopterin oxidoreductase Afer_1020 PF01568 Molydopterin dinucleotide binding domain Afer_1020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Afer_1021 PF03916 Afer_1021 Afer_1021 PF12800 4Fe-4S binding domain Afer_1021 PF13247 4Fe-4S dicluster domain Afer_1022 PF11127 Protein of unknown function (DUF2892) Afer_1024 PF00535 Glycosyl transferase family 2 Afer_1025 PF02867 Ribonucleotide reductase, barrel domain Afer_1025 PF08471 Afer_1025 Afer_1025 PF14528 LAGLIDADG-like domain Afer_1025 PF14890 Intein splicing domain Afer_1026 PF00581 Rhodanese-like domain Afer_1026 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_1026 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1027 PF00501 AMP-binding enzyme Afer_1027 PF13193 AMP-binding enzyme C-terminal domain Afer_1028 PF00440 Bacterial regulatory proteins, tetR family Afer_1029 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_1029 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_1029 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_1030 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain Afer_1031 PF01039 Carboxyl transferase domain Afer_1032 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain Afer_1032 PF00364 Biotin-requiring enzyme Afer_1032 PF02785 Biotin carboxylase C-terminal domain Afer_1032 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Afer_1033 PF07287 Afer_1033 Afer_1034 PF00378 Enoyl-CoA hydratase/isomerase family Afer_1035 PF00324 Amino acid permease Afer_1036 PF07690 Major Facilitator Superfamily Afer_1037 PF12802 MarR family Afer_1038 PF01161 Phosphatidylethanolamine-binding protein Afer_1039 PF00654 Voltage gated chloride channel Afer_1040 PF00440 Bacterial regulatory proteins, tetR family Afer_1040 PF02909 Tetracyclin repressor, C-terminal all-alpha domain Afer_1041 PF01070 FMN-dependent dehydrogenase Afer_1043 PF12730 Afer_1043 Afer_1044 PF00005 ABC transporter Afer_1051 PF00665 Integrase core domain Afer_1051 PF13276 Afer_1051 Afer_1052 PF04055 Radical SAM superfamily Afer_1053 PF03099 Biotin/lipoate A/B protein ligase family Afer_1053 PF10437 Bacterial lipoate protein ligase C-terminus Afer_1055 PF01597 Glycine cleavage H-protein Afer_1057 PF13561 Enoyl-(Acyl carrier protein) reductase Afer_1058 PF02687 Afer_1058 Afer_1059 PF00005 ABC transporter Afer_1060 PF00005 ABC transporter Afer_1061 PF07690 Major Facilitator Superfamily Afer_1062 PF07690 Major Facilitator Superfamily Afer_1064 PF06738 Afer_1064 Afer_1064 PF12821 Afer_1064 Afer_1065 PF07690 Major Facilitator Superfamily Afer_1067 PF12705 PD-(D/E)XK nuclease superfamily Afer_1068 PF01636 Phosphotransferase enzyme family Afer_1070 PF01112 Asparaginase Afer_1071 PF00082 Subtilase family Afer_1071 PF09286 Pro-kumamolisin, activation domain Afer_1072 PF02566 OsmC-like protein Afer_1073 PF12088 Afer_1073 Afer_1075 PF00132 Bacterial transferase hexapeptide (six repeats) Afer_1076 PF00005 ABC transporter Afer_1077 PF00892 EamA-like transporter family Afer_1078 PF00990 GGDEF domain Afer_1079 PF00575 S1 RNA binding domain Afer_1080 PF00476 DNA polymerase family A Afer_1080 PF01367 5'-3' exonuclease, C-terminal SAM fold Afer_1080 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Afer_1081 PF00072 Response regulator receiver domain Afer_1081 PF03861 ANTAR domain Afer_1082 PF00753 Metallo-beta-lactamase superfamily Afer_1084 PF01565 FAD binding domain Afer_1084 PF02913 FAD linked oxidases, C-terminal domain Afer_1085 PF00698 Acyl transferase domain Afer_1086 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Afer_1086 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Afer_1087 PF13561 Enoyl-(Acyl carrier protein) reductase Afer_1088 PF00550 Phosphopantetheine attachment site Afer_1089 PF00109 Beta-ketoacyl synthase, N-terminal domain Afer_1089 PF02801 Beta-ketoacyl synthase, C-terminal domain Afer_1091 PF00732 GMC oxidoreductase Afer_1091 PF05199 GMC oxidoreductase Afer_1092 PF03109 Afer_1092 Afer_1093 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Afer_1093 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Afer_1094 PF00290 Tryptophan synthase alpha chain Afer_1095 PF00291 Pyridoxal-phosphate dependent enzyme Afer_1096 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Afer_1097 PF00218 Indole-3-glycerol phosphate synthase Afer_1098 PF07690 Major Facilitator Superfamily Afer_1099 PF00072 Response regulator receiver domain Afer_1099 PF00486 Transcriptional regulatory protein, C terminal Afer_1100 PF00512 His Kinase A (phospho-acceptor) domain Afer_1100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_1101 PF00563 EAL domain Afer_1101 PF00990 GGDEF domain Afer_1102 PF01571 Aminomethyltransferase folate-binding domain Afer_1103 PF00425 chorismate binding enzyme Afer_1103 PF04715 Anthranilate synthase component I, N terminal region Afer_1104 PF01502 Phosphoribosyl-AMP cyclohydrolase Afer_1105 PF00166 Chaperonin 10 Kd subunit Afer_1106 PF00977 Histidine biosynthesis protein Afer_1107 PF00977 Histidine biosynthesis protein Afer_1108 PF00117 Glutamine amidotransferase class-I Afer_1109 PF00475 Imidazoleglycerol-phosphate dehydratase Afer_1110 PF00155 Aminotransferase class I and II Afer_1111 PF00815 Histidinol dehydrogenase Afer_1113 PF09335 Afer_1113 Afer_1114 PF00224 Pyruvate kinase, barrel domain Afer_1114 PF02887 Pyruvate kinase, alpha/beta domain Afer_1116 PF00892 EamA-like transporter family Afer_1117 PF06146 Afer_1117 Afer_1118 PF02347 Glycine cleavage system P-protein Afer_1119 PF02347 Glycine cleavage system P-protein Afer_1120 PF01571 Aminomethyltransferase folate-binding domain Afer_1120 PF08669 Glycine cleavage T-protein C-terminal barrel domain Afer_1122 PF01066 CDP-alcohol phosphatidyltransferase Afer_1123 PF00132 Bacterial transferase hexapeptide (six repeats) Afer_1123 PF00483 Nucleotidyl transferase Afer_1123 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Afer_1123 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Afer_1124 PF01597 Glycine cleavage H-protein Afer_1125 PF13240 Afer_1125 Afer_1125 PF16697 Afer_1125 Afer_1126 PF00376 MerR family regulatory protein Afer_1128 PF02577 Bifunctional nuclease Afer_1129 PF02683 Afer_1129 Afer_1130 PF07690 Major Facilitator Superfamily Afer_1131 PF09678 Afer_1131 Afer_1132 PF02163 Peptidase family M50 Afer_1133 PF00589 Phage integrase family Afer_1133 PF02899 Phage integrase, N-terminal SAM-like domain Afer_1134 PF00293 NUDIX domain Afer_1135 PF00117 Glutamine amidotransferase class-I Afer_1135 PF06418 CTP synthase N-terminus Afer_1136 PF02463 RecF/RecN/SMC N terminal domain Afer_1137 PF01513 ATP-NAD kinase Afer_1138 PF01479 S4 domain Afer_1138 PF01728 FtsJ-like methyltransferase Afer_1139 PF01569 PAP2 superfamily Afer_1140 PF07690 Major Facilitator Superfamily Afer_1141 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Afer_1142 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1143 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1143 PF12911 Afer_1143 Afer_1144 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Afer_1145 PF03816 Cell envelope-related transcriptional attenuator domain Afer_1146 PF00682 HMGL-like Afer_1147 PF00005 ABC transporter Afer_1147 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Afer_1148 PF04055 Radical SAM superfamily Afer_1148 PF13353 4Fe-4S single cluster domain Afer_1149 PF00501 AMP-binding enzyme Afer_1149 PF13193 AMP-binding enzyme C-terminal domain Afer_1151 PF00501 AMP-binding enzyme Afer_1151 PF13193 AMP-binding enzyme C-terminal domain Afer_1152 PF01266 FAD dependent oxidoreductase Afer_1153 PF02597 ThiS family Afer_1154 PF05690 Thiazole biosynthesis protein ThiG Afer_1155 PF08543 Phosphomethylpyrimidine kinase Afer_1156 PF00563 EAL domain Afer_1156 PF00990 GGDEF domain Afer_1157 PF02153 Prephenate dehydrogenase Afer_1158 PF00800 Prephenate dehydratase Afer_1158 PF01842 ACT domain Afer_1159 PF03358 NADPH-dependent FMN reductase Afer_1160 PF01243 Pyridoxamine 5'-phosphate oxidase Afer_1161 PF01494 FAD binding domain Afer_1163 PF00403 Heavy-metal-associated domain Afer_1164 PF00122 E1-E2 ATPase Afer_1164 PF00403 Heavy-metal-associated domain Afer_1164 PF00702 haloacid dehalogenase-like hydrolase Afer_1166 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Afer_1167 PF05016 Plasmid stabilisation system protein Afer_1168 PF08241 Methyltransferase domain Afer_1170 PF01828 Peptidase A4 family Afer_1171 PF07690 Major Facilitator Superfamily Afer_1172 PF00581 Rhodanese-like domain Afer_1172 PF01022 Bacterial regulatory protein, arsR family Afer_1173 PF00072 Response regulator receiver domain Afer_1173 PF00486 Transcriptional regulatory protein, C terminal Afer_1174 PF00512 His Kinase A (phospho-acceptor) domain Afer_1174 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_1174 PF13493 Domain of unknown function (DUF4118) Afer_1175 PF00582 Universal stress protein family Afer_1175 PF02702 Osmosensitive K+ channel His kinase sensor domain Afer_1176 PF02669 Afer_1176 Afer_1177 PF00122 E1-E2 ATPase Afer_1177 PF00702 haloacid dehalogenase-like hydrolase Afer_1178 PF03814 Afer_1178 Afer_1180 PF07690 Major Facilitator Superfamily Afer_1181 PF13520 Amino acid permease Afer_1183 PF00899 ThiF family Afer_1185 PF04542 Sigma-70 region 2 Afer_1185 PF04545 Sigma-70, region 4 Afer_1186 PF13490 Putative zinc-finger Afer_1187 PF00300 Histidine phosphatase superfamily (branch 1) Afer_1188 PF02601 Afer_1188 Afer_1188 PF13742 Afer_1188 Afer_1190 PF00202 Aminotransferase class-III Afer_1191 PF00990 GGDEF domain Afer_1191 PF13185 GAF domain Afer_1192 PF00877 NlpC/P60 family Afer_1193 PF02515 CoA-transferase family III Afer_1194 PF01425 Amidase Afer_1196 PF02502 Ribose/Galactose Isomerase Afer_1197 PF10759 Afer_1197 Afer_1198 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase Afer_1199 PF02082 Transcriptional regulator Afer_1200 PF00583 Acetyltransferase (GNAT) family Afer_1200 PF13380 CoA binding domain Afer_1200 PF13607 Succinyl-CoA ligase like flavodoxin domain Afer_1201 PF00255 Glutathione peroxidase Afer_1202 PF00171 Aldehyde dehydrogenase family Afer_1203 PF05960 Bacterial protein of unknown function (DUF885) Afer_1205 PF12679 Afer_1205 Afer_1206 PF00005 ABC transporter Afer_1208 PF00140 Sigma-70 factor, region 1 Afer_1208 PF04539 Sigma-70 region 3 Afer_1208 PF04542 Sigma-70 region 2 Afer_1208 PF04545 Sigma-70, region 4 Afer_1209 PF00849 RNA pseudouridylate synthase Afer_1209 PF01479 S4 domain Afer_1210 PF01252 Afer_1210 Afer_1212 PF00133 tRNA synthetases class I (I, L, M and V) Afer_1212 PF08264 Anticodon-binding domain of tRNA Afer_1213 PF13520 Amino acid permease Afer_1215 PF05491 Holliday junction DNA helicase ruvB C-terminus Afer_1215 PF05496 Holliday junction DNA helicase ruvB N-terminus Afer_1216 PF01330 RuvA N terminal domain Afer_1216 PF14520 Helix-hairpin-helix domain Afer_1217 PF02075 Crossover junction endodeoxyribonuclease RuvC Afer_1218 PF00578 AhpC/TSA family Afer_1219 PF01709 Transcriptional regulator Afer_1220 PF01174 SNO glutamine amidotransferase family Afer_1221 PF01680 SOR/SNZ family Afer_1223 PF13439 Glycosyltransferase Family 4 Afer_1223 PF13692 Glycosyl transferases group 1 Afer_1224 PF03279 Afer_1224 Afer_1225 PF01066 CDP-alcohol phosphatidyltransferase Afer_1226 PF00009 Elongation factor Tu GTP binding domain Afer_1226 PF00679 Elongation factor G C-terminus Afer_1226 PF03764 Elongation factor G, domain IV Afer_1226 PF14492 Elongation Factor G, domain II Afer_1227 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Afer_1228 PF01230 HIT domain Afer_1229 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Afer_1229 PF03129 Anticodon binding domain Afer_1229 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Afer_1230 PF01406 tRNA synthetases class I (C) catalytic domain Afer_1231 PF03807 NADP oxidoreductase coenzyme F420-dependent Afer_1232 PF13561 Enoyl-(Acyl carrier protein) reductase Afer_1234 PF02678 Pirin Afer_1234 PF05726 Pirin C-terminal cupin domain Afer_1235 PF01261 Xylose isomerase-like TIM barrel Afer_1236 PF05103 DivIVA protein Afer_1237 PF02325 Afer_1237 Afer_1238 PF04472 Protein of unknown function (DUF552) Afer_1239 PF01168 Alanine racemase, N-terminal domain Afer_1240 PF02578 Multi-copper polyphenol oxidoreductase laccase Afer_1241 PF00091 Tubulin/FtsZ family, GTPase domain Afer_1241 PF12327 FtsZ family, C-terminal domain Afer_1243 PF01565 FAD binding domain Afer_1243 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Afer_1244 PF01225 Mur ligase family, catalytic domain Afer_1244 PF02875 Mur ligase family, glutamate ligase domain Afer_1244 PF08245 Mur ligase middle domain Afer_1245 PF03033 Glycosyltransferase family 28 N-terminal domain Afer_1245 PF04101 Glycosyltransferase family 28 C-terminal domain Afer_1246 PF01098 Afer_1246 Afer_1247 PF02875 Mur ligase family, glutamate ligase domain Afer_1247 PF08245 Mur ligase middle domain Afer_1248 PF00953 Glycosyl transferase family 4 Afer_1248 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Afer_1249 PF01225 Mur ligase family, catalytic domain Afer_1249 PF02875 Mur ligase family, glutamate ligase domain Afer_1249 PF08245 Mur ligase middle domain Afer_1250 PF00905 Penicillin binding protein transpeptidase domain Afer_1250 PF03717 Penicillin-binding Protein dimerisation domain Afer_1252 PF01795 MraW methylase family Afer_1253 PF02381 MraZ protein Afer_1254 PF03099 Biotin/lipoate A/B protein ligase family Afer_1255 PF01037 AsnC family Afer_1257 PF00768 D-alanyl-D-alanine carboxypeptidase Afer_1259 PF01569 PAP2 superfamily Afer_1260 PF04539 Sigma-70 region 3 Afer_1260 PF04542 Sigma-70 region 2 Afer_1260 PF04545 Sigma-70, region 4 Afer_1261 PF01807 CHC2 zinc finger Afer_1261 PF08275 DNA primase catalytic core, N-terminal domain Afer_1261 PF10410 DnaB-helicase binding domain of primase Afer_1261 PF13155 Toprim-like Afer_1262 PF00391 PEP-utilising enzyme, mobile domain Afer_1262 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Afer_1262 PF02896 PEP-utilising enzyme, TIM barrel domain Afer_1263 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Afer_1263 PF03129 Anticodon binding domain Afer_1264 PF02565 Recombination protein O C terminal Afer_1264 PF11967 Recombination protein O N terminal Afer_1266 PF01255 Putative undecaprenyl diphosphate synthase Afer_1267 PF08768 Domain of unknown function (DUF1794) Afer_1268 PF01926 50S ribosome-binding GTPase Afer_1268 PF07650 KH domain Afer_1269 PF00571 CBS domain Afer_1269 PF01595 Afer_1269 Afer_1269 PF03471 Transporter associated domain Afer_1270 PF02130 Uncharacterized protein family UPF0054 Afer_1271 PF02562 PhoH-like protein Afer_1273 PF12728 Helix-turn-helix domain Afer_1274 PF08666 SAF domain Afer_1274 PF16976 Afer_1274 Afer_1276 PF00753 Metallo-beta-lactamase superfamily Afer_1277 PF00437 Type II/IV secretion system protein Afer_1285 PF13350 Tyrosine phosphatase family Afer_1286 PF00501 AMP-binding enzyme Afer_1286 PF13193 AMP-binding enzyme C-terminal domain Afer_1286 PF16177 Afer_1286 Afer_1287 PF01184 Afer_1287 Afer_1290 PF04055 Radical SAM superfamily Afer_1291 PF01381 Helix-turn-helix Afer_1292 PF04452 RNA methyltransferase Afer_1293 PF00226 DnaJ domain Afer_1293 PF00684 DnaJ central domain Afer_1293 PF01556 DnaJ C terminal domain Afer_1294 PF01628 HrcA protein C terminal domain Afer_1295 PF01649 Ribosomal protein S20 Afer_1296 PF00009 Elongation factor Tu GTP binding domain Afer_1296 PF00679 Elongation factor G C-terminus Afer_1296 PF06421 GTP-binding protein LepA C-terminus Afer_1299 PF02424 ApbE family Afer_1300 PF04205 FMN-binding domain Afer_1301 PF01794 Afer_1301 Afer_1301 PF08022 Afer_1301 Afer_1302 PF00875 DNA photolyase Afer_1302 PF03441 FAD binding domain of DNA photolyase Afer_1304 PF00809 Pterin binding enzyme Afer_1305 PF00085 Thioredoxin Afer_1305 PF14559 Tetratricopeptide repeat Afer_1306 PF00248 Aldo/keto reductase family Afer_1307 PF00561 alpha/beta hydrolase fold Afer_1308 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Afer_1309 PF12900 Pyridoxamine 5'-phosphate oxidase Afer_1310 PF00005 ABC transporter Afer_1311 PF02687 Afer_1311 Afer_1314 PF13391 Afer_1314 Afer_1315 PF01527 Transposase Afer_1316 PF00665 Integrase core domain Afer_1316 PF13276 Afer_1316 Afer_1319 PF00665 Integrase core domain Afer_1319 PF13276 Afer_1319 Afer_1320 PF01527 Transposase Afer_1321 PF14659 Phage integrase, N-terminal SAM-like domain Afer_1322 PF00133 tRNA synthetases class I (I, L, M and V) Afer_1322 PF08264 Anticodon-binding domain of tRNA Afer_1322 PF09334 tRNA synthetases class I (M) Afer_1322 PF13603 Leucyl-tRNA synthetase, Domain 2 Afer_1323 PF01609 Transposase DDE domain Afer_1323 PF05598 Afer_1323 Afer_1323 PF13751 Afer_1323 Afer_1324 PF01427 D-ala-D-ala dipeptidase Afer_1325 PF13520 Amino acid permease Afer_1326 PF00392 Bacterial regulatory proteins, gntR family Afer_1326 PF07729 FCD domain Afer_1327 PF00005 ABC transporter Afer_1328 PF00128 Alpha amylase, catalytic domain Afer_1329 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1330 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1331 PF01547 Bacterial extracellular solute-binding protein Afer_1332 PF00356 Bacterial regulatory proteins, lacI family Afer_1332 PF13377 Periplasmic binding protein-like domain Afer_1335 PF00132 Bacterial transferase hexapeptide (six repeats) Afer_1336 PF00291 Pyridoxal-phosphate dependent enzyme Afer_1337 PF00730 HhH-GPD superfamily base excision DNA repair protein Afer_1338 PF12840 Helix-turn-helix domain Afer_1339 PF05977 Transmembrane secretion effector Afer_1341 PF01934 Protein of unknown function DUF86 Afer_1342 PF01909 Nucleotidyltransferase domain Afer_1343 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Afer_1344 PF00753 Metallo-beta-lactamase superfamily Afer_1346 PF01039 Carboxyl transferase domain Afer_1347 PF01926 50S ribosome-binding GTPase Afer_1347 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Afer_1348 PF04459 Afer_1348 Afer_1349 PF02401 LytB protein Afer_1350 PF01553 Acyltransferase Afer_1351 PF02224 Cytidylate kinase Afer_1352 PF01435 Peptidase family M48 Afer_1354 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Afer_1355 PF07736 Chorismate mutase type I Afer_1356 PF00849 RNA pseudouridylate synthase Afer_1356 PF01479 S4 domain Afer_1357 PF04079 Putative transcriptional regulators (Ypuh-like) Afer_1359 PF13673 Acetyltransferase (GNAT) domain Afer_1360 PF02754 Afer_1360 Afer_1360 PF12838 4Fe-4S dicluster domain Afer_1361 PF01565 FAD binding domain Afer_1362 PF01565 FAD binding domain Afer_1362 PF02913 FAD linked oxidases, C-terminal domain Afer_1363 PF00106 short chain dehydrogenase Afer_1364 PF01966 HD domain Afer_1364 PF13286 Phosphohydrolase-associated domain Afer_1365 PF03551 Transcriptional regulator PadR-like family Afer_1366 PF02635 DsrE/DsrF-like family Afer_1367 PF00501 AMP-binding enzyme Afer_1367 PF13193 AMP-binding enzyme C-terminal domain Afer_1368 PF01906 Putative heavy-metal-binding Afer_1369 PF11127 Protein of unknown function (DUF2892) Afer_1370 PF00108 Thiolase, N-terminal domain Afer_1370 PF02803 Thiolase, C-terminal domain Afer_1371 PF03061 Thioesterase superfamily Afer_1372 PF00440 Bacterial regulatory proteins, tetR family Afer_1373 PF00378 Enoyl-CoA hydratase/isomerase family Afer_1374 PF00378 Enoyl-CoA hydratase/isomerase family Afer_1375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Afer_1375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Afer_1376 PF11583 P-aminobenzoate N-oxygenase AurF Afer_1377 PF00111 2Fe-2S iron-sulfur cluster binding domain Afer_1377 PF00175 Oxidoreductase NAD-binding domain Afer_1377 PF00970 Oxidoreductase FAD-binding domain Afer_1378 PF00171 Aldehyde dehydrogenase family Afer_1378 PF01619 Proline dehydrogenase Afer_1379 PF07690 Major Facilitator Superfamily Afer_1380 PF13343 Bacterial extracellular solute-binding protein Afer_1381 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1382 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1383 PF00005 ABC transporter Afer_1383 PF08402 TOBE domain Afer_1384 PF00149 Calcineurin-like phosphoesterase Afer_1385 PF00563 EAL domain Afer_1385 PF00990 GGDEF domain Afer_1385 PF11563 Protoglobin Afer_1386 PF12079 Afer_1386 Afer_1387 PF01609 Transposase DDE domain Afer_1387 PF05598 Afer_1387 Afer_1387 PF13751 Afer_1387 Afer_1388 PF13481 AAA domain Afer_1393 PF04851 Type III restriction enzyme, res subunit Afer_1394 PF01555 DNA methylase Afer_1395 PF14335 Afer_1395 Afer_1396 PF00176 SNF2 family N-terminal domain Afer_1396 PF00271 Helicase conserved C-terminal domain Afer_1398 PF00805 Pentapeptide repeats (8 copies) Afer_1399 PF01609 Transposase DDE domain Afer_1399 PF05598 Afer_1399 Afer_1399 PF13751 Afer_1399 Afer_1400 PF11258 Protein of unknown function (DUF3048) Afer_1400 PF17479 Afer_1400 Afer_1401 PF00563 EAL domain Afer_1402 PF00563 EAL domain Afer_1403 PF13686 DsrE/DsrF/DrsH-like family Afer_1404 PF01206 Sulfurtransferase TusA Afer_1405 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1407 PF04343 Afer_1407 Afer_1408 PF00330 Aconitase family (aconitate hydratase) Afer_1408 PF00694 Aconitase C-terminal domain Afer_1409 PF00392 Bacterial regulatory proteins, gntR family Afer_1409 PF07702 UTRA domain Afer_1410 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Afer_1411 PF01418 Helix-turn-helix domain, rpiR family Afer_1412 PF01546 Peptidase family M20/M25/M40 Afer_1412 PF07687 Peptidase dimerisation domain Afer_1413 PF01979 Amidohydrolase family Afer_1414 PF01175 Urocanase Afer_1414 PF17391 Afer_1414 Afer_1414 PF17392 Afer_1414 Afer_1415 PF01979 Amidohydrolase family Afer_1416 PF09684 Afer_1416 Afer_1417 PF04865 Afer_1417 Afer_1418 PF04965 Gene 25-like lysozyme Afer_1419 PF13699 Afer_1419 Afer_1420 PF06841 Afer_1420 Afer_1423 PF06841 Afer_1423 Afer_1424 PF04984 Phage tail sheath protein Afer_1424 PF17482 Afer_1424 Afer_1425 PF00239 Resolvase, N terminal domain Afer_1429 PF01553 Acyltransferase Afer_1430 PF09861 Domain of unknown function (DUF2088) Afer_1431 PF00107 Zinc-binding dehydrogenase Afer_1431 PF08240 Alcohol dehydrogenase GroES-like domain Afer_1432 PF07993 Male sterility protein Afer_1432 PF12710 haloacid dehalogenase-like hydrolase Afer_1434 PF00083 Sugar (and other) transporter Afer_1435 PF01965 DJ-1/PfpI family Afer_1437 PF07690 Major Facilitator Superfamily Afer_1438 PF00440 Bacterial regulatory proteins, tetR family Afer_1439 PF01022 Bacterial regulatory protein, arsR family Afer_1441 PF07685 CobB/CobQ-like glutamine amidotransferase domain Afer_1442 PF08245 Mur ligase middle domain Afer_1442 PF08353 Afer_1442 Afer_1443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Afer_1443 PF03466 LysR substrate binding domain Afer_1444 PF00106 short chain dehydrogenase Afer_1445 PF01895 PhoU domain Afer_1446 PF00072 Response regulator receiver domain Afer_1446 PF00196 Bacterial regulatory proteins, luxR family Afer_1447 PF00582 Universal stress protein family Afer_1448 PF07690 Major Facilitator Superfamily Afer_1450 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1450 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Afer_1450 PF14697 4Fe-4S dicluster domain Afer_1451 PF12801 Afer_1451 Afer_1452 PF02082 Transcriptional regulator Afer_1453 PF01475 Ferric uptake regulator family Afer_1455 PF00248 Aldo/keto reductase family Afer_1457 PF13649 Methyltransferase domain Afer_1458 PF01425 Amidase Afer_1459 PF10604 Polyketide cyclase / dehydrase and lipid transport Afer_1460 PF00270 DEAD/DEAH box helicase Afer_1460 PF00271 Helicase conserved C-terminal domain Afer_1461 PF00633 Helix-hairpin-helix motif Afer_1461 PF00730 HhH-GPD superfamily base excision DNA repair protein Afer_1461 PF10576 Iron-sulfur binding domain of endonuclease III Afer_1462 PF00583 Acetyltransferase (GNAT) family Afer_1463 PF00266 Aminotransferase class-V Afer_1467 PF00929 Exonuclease Afer_1467 PF02151 UvrB/uvrC motif Afer_1468 PF00591 Glycosyl transferase family, a/b domain Afer_1468 PF02885 Glycosyl transferase family, helical bundle domain Afer_1469 PF00563 EAL domain Afer_1469 PF00990 GGDEF domain Afer_1470 PF00990 GGDEF domain Afer_1470 PF13188 PAS domain Afer_1471 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_1471 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_1471 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_1472 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Afer_1472 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Afer_1473 PF09678 Afer_1473 Afer_1474 PF02222 ATP-grasp domain Afer_1475 PF00731 AIR carboxylase Afer_1477 PF01609 Transposase DDE domain Afer_1477 PF05598 Afer_1477 Afer_1477 PF13751 Afer_1477 Afer_1478 PF02599 Global regulator protein family Afer_1485 PF01527 Transposase Afer_1486 PF00665 Integrase core domain Afer_1486 PF13276 Afer_1486 Afer_1487 PF01609 Transposase DDE domain Afer_1487 PF05598 Afer_1487 Afer_1487 PF13751 Afer_1487 Afer_1488 PF02591 Putative zinc ribbon domain Afer_1489 PF06271 Afer_1489 Afer_1490 PF07690 Major Facilitator Superfamily Afer_1491 PF00719 Inorganic pyrophosphatase Afer_1492 PF01106 NifU-like domain Afer_1493 PF00378 Enoyl-CoA hydratase/isomerase family Afer_1495 PF01053 Cys/Met metabolism PLP-dependent enzyme Afer_1496 PF10611 Afer_1496 Afer_1497 PF01245 Ribosomal protein L19 Afer_1498 PF01746 tRNA (Guanine-1)-methyltransferase Afer_1499 PF01782 RimM N-terminal domain Afer_1500 PF13083 KH domain Afer_1501 PF00886 Ribosomal protein S16 Afer_1502 PF00448 SRP54-type protein, GTPase domain Afer_1502 PF02881 SRP54-type protein, helical bundle domain Afer_1502 PF02978 Signal peptide binding domain Afer_1503 PF00448 SRP54-type protein, GTPase domain Afer_1505 PF04542 Sigma-70 region 2 Afer_1505 PF08281 Sigma-70, region 4 Afer_1507 PF02463 RecF/RecN/SMC N terminal domain Afer_1508 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Afer_1508 PF06827 Zinc finger found in FPG and IleRS Afer_1508 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Afer_1509 PF00035 Double-stranded RNA binding motif Afer_1509 PF14622 Ribonuclease-III-like Afer_1510 PF00550 Phosphopantetheine attachment site Afer_1511 PF02504 Fatty acid synthesis protein Afer_1512 PF02620 Afer_1512 Afer_1514 PF01467 Cytidylyltransferase Afer_1515 PF03602 Conserved hypothetical protein 95 Afer_1516 PF00270 DEAD/DEAH box helicase Afer_1516 PF00271 Helicase conserved C-terminal domain Afer_1516 PF17191 Afer_1516 Afer_1517 PF02734 DAK2 domain Afer_1517 PF13684 Dihydroxyacetone kinase family Afer_1518 PF00830 Ribosomal L28 family Afer_1519 PF00762 Ferrochelatase Afer_1520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Afer_1521 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Afer_1521 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Afer_1522 PF01263 Aldose 1-epimerase Afer_1523 PF13631 Cytochrome b(N-terminal)/b6/petB Afer_1525 PF00563 EAL domain Afer_1525 PF00990 GGDEF domain Afer_1525 PF13185 GAF domain Afer_1526 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_1526 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_1526 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_1527 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Afer_1527 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Afer_1528 PF00749 tRNA synthetases class I (E and Q), catalytic domain Afer_1529 PF00682 HMGL-like Afer_1529 PF08502 LeuA allosteric (dimerisation) domain Afer_1530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Afer_1530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Afer_1531 PF00155 Aminotransferase class I and II Afer_1532 PF00266 Aminotransferase class-V Afer_1533 PF00694 Aconitase C-terminal domain Afer_1534 PF00330 Aconitase family (aconitate hydratase) Afer_1535 PF01272 Transcription elongation factor, GreA/GreB, C-term Afer_1535 PF03449 Transcription elongation factor, N-terminal Afer_1536 PF00180 Isocitrate/isopropylmalate dehydrogenase Afer_1537 PF01063 Aminotransferase class IV Afer_1538 PF00682 HMGL-like Afer_1538 PF08502 LeuA allosteric (dimerisation) domain Afer_1542 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1545 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Afer_1545 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain Afer_1546 PF10369 Small subunit of acetolactate synthase Afer_1546 PF13710 ACT domain Afer_1547 PF00205 Thiamine pyrophosphate enzyme, central domain Afer_1547 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Afer_1547 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Afer_1548 PF00920 Dehydratase family Afer_1549 PF02637 GatB domain Afer_1549 PF02934 GatB/GatE catalytic domain Afer_1550 PF01425 Amidase Afer_1551 PF02686 Glu-tRNAGln amidotransferase C subunit Afer_1553 PF00069 Protein kinase domain Afer_1553 PF03793 PASTA domain Afer_1554 PF00533 BRCA1 C Terminus (BRCT) domain Afer_1554 PF01653 NAD-dependent DNA ligase adenylation domain Afer_1554 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Afer_1554 PF03120 NAD-dependent DNA ligase OB-fold domain Afer_1554 PF12826 Helix-hairpin-helix motif Afer_1554 PF14520 Helix-hairpin-helix domain Afer_1555 PF03054 tRNA methyl transferase Afer_1556 PF03009 Glycerophosphoryl diester phosphodiesterase family Afer_1558 PF01790 Afer_1558 Afer_1559 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Afer_1560 PF00144 Beta-lactamase Afer_1561 PF00085 Thioredoxin Afer_1562 PF04417 Afer_1562 Afer_1563 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) Afer_1564 PF12804 MobA-like NTP transferase domain Afer_1565 PF02625 XdhC and CoxI family Afer_1565 PF13478 XdhC Rossmann domain Afer_1566 PF05762 VWA domain containing CoxE-like protein Afer_1567 PF07728 AAA domain (dynein-related subfamily) Afer_1568 PF00941 FAD binding domain in molybdopterin dehydrogenase Afer_1568 PF03450 CO dehydrogenase flavoprotein C-terminal domain Afer_1569 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Afer_1569 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Afer_1570 PF00111 2Fe-2S iron-sulfur cluster binding domain Afer_1570 PF01799 [2Fe-2S] binding domain Afer_1571 PF01957 NfeD-like C-terminal, partner-binding Afer_1572 PF01145 SPFH domain / Band 7 family Afer_1573 PF02653 Afer_1573 Afer_1574 PF00005 ABC transporter Afer_1575 PF13407 Periplasmic binding protein domain Afer_1576 PF00072 Response regulator receiver domain Afer_1576 PF00486 Transcriptional regulatory protein, C terminal Afer_1577 PF00005 ABC transporter Afer_1577 PF00512 His Kinase A (phospho-acceptor) domain Afer_1577 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Afer_1578 PF12705 PD-(D/E)XK nuclease superfamily Afer_1579 PF00580 UvrD/REP helicase N-terminal domain Afer_1579 PF13361 UvrD-like helicase C-terminal domain Afer_1581 PF04542 Sigma-70 region 2 Afer_1581 PF08281 Sigma-70, region 4 Afer_1582 PF10099 Afer_1582 Afer_1582 PF13490 Putative zinc-finger Afer_1584 PF03009 Glycerophosphoryl diester phosphodiesterase family Afer_1585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Afer_1585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Afer_1587 PF01987 Mitochondrial biogenesis AIM24 Afer_1589 PF00113 Enolase, C-terminal TIM barrel domain Afer_1589 PF03952 Enolase, N-terminal domain Afer_1590 PF03819 MazG nucleotide pyrophosphohydrolase domain Afer_1593 PF13145 PPIC-type PPIASE domain Afer_1594 PF00270 DEAD/DEAH box helicase Afer_1594 PF00271 Helicase conserved C-terminal domain Afer_1594 PF02559 CarD-like/TRCF domain Afer_1594 PF03461 TRCF domain Afer_1595 PF01195 Peptidyl-tRNA hydrolase Afer_1596 PF01386 Ribosomal L25p family Afer_1596 PF14693 Ribosomal protein TL5, C-terminal domain Afer_1597 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Afer_1597 PF14572 Phosphoribosyl synthetase-associated domain Afer_1598 PF00149 Calcineurin-like phosphoesterase Afer_1599 PF12804 MobA-like NTP transferase domain Afer_1600 PF14587 O-Glycosyl hydrolase family 30 Afer_1601 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Afer_1601 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Afer_1602 PF00326 Prolyl oligopeptidase family Afer_1602 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Afer_1603 PF01575 MaoC like domain Afer_1605 PF02517 CAAX protease self-immunity Afer_1606 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1606 PF01434 Peptidase family M41 Afer_1606 PF06480 FtsH Extracellular Afer_1607 PF04794 YdjC-like protein Afer_1608 PF02036 SCP-2 sterol transfer family Afer_1609 PF02585 GlcNAc-PI de-N-acetylase Afer_1611 PF02811 PHP domain Afer_1611 PF07733 Bacterial DNA polymerase III alpha subunit Afer_1611 PF14579 Helix-hairpin-helix motif Afer_1614 PF00392 Bacterial regulatory proteins, gntR family Afer_1614 PF07702 UTRA domain Afer_1615 PF00570 HRDC domain Afer_1615 PF01612 3'-5' exonuclease Afer_1616 PF01230 HIT domain Afer_1620 PF01850 PIN domain Afer_1621 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Afer_1624 PF00579 tRNA synthetases class I (W and Y) Afer_1624 PF01479 S4 domain Afer_1625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Afer_1626 PF12697 Alpha/beta hydrolase family Afer_1627 PF01040 UbiA prenyltransferase family Afer_1628 PF00501 AMP-binding enzyme Afer_1628 PF13193 AMP-binding enzyme C-terminal domain Afer_1629 PF13520 Amino acid permease Afer_1630 PF13561 Enoyl-(Acyl carrier protein) reductase Afer_1631 PF03190 Protein of unknown function, DUF255 Afer_1633 PF02627 Carboxymuconolactone decarboxylase family Afer_1635 PF12728 Helix-turn-helix domain Afer_1636 PF13470 Afer_1636 Afer_1637 PF08044 Afer_1637 Afer_1638 PF02811 PHP domain Afer_1638 PF07733 Bacterial DNA polymerase III alpha subunit Afer_1638 PF14579 Helix-hairpin-helix motif Afer_1639 PF03575 Peptidase family S51 Afer_1640 PF00282 Pyridoxal-dependent decarboxylase conserved domain Afer_1641 PF00501 AMP-binding enzyme Afer_1641 PF13193 AMP-binding enzyme C-terminal domain Afer_1641 PF16177 Afer_1641 Afer_1644 PF14489 QueF-like protein Afer_1646 PF00892 EamA-like transporter family Afer_1647 PF00239 Resolvase, N terminal domain Afer_1648 PF02661 Fic/DOC family Afer_1654 PF00872 Afer_1654 Afer_1655 PF00872 Afer_1655 Afer_1657 PF02245 Methylpurine-DNA glycosylase (MPG) Afer_1658 PF00206 Lyase Afer_1658 PF14698 Argininosuccinate lyase C-terminal Afer_1659 PF00764 Arginosuccinate synthase Afer_1660 PF01316 Arginine repressor, DNA binding domain Afer_1660 PF02863 Arginine repressor, C-terminal domain Afer_1661 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Afer_1661 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Afer_1662 PF00202 Aminotransferase class-III Afer_1663 PF00696 Amino acid kinase family Afer_1664 PF01960 ArgJ family Afer_1665 PF01118 Semialdehyde dehydrogenase, NAD binding domain Afer_1665 PF02774 Semialdehyde dehydrogenase, dimerisation domain Afer_1666 PF05656 Afer_1666 Afer_1667 PF09594 Afer_1667 Afer_1668 PF14403 Afer_1668 Afer_1669 PF04168 Afer_1669 Afer_1670 PF01841 Transglutaminase-like superfamily Afer_1670 PF08379 Afer_1670 Afer_1671 PF07843 Afer_1671 Afer_1672 PF01925 Afer_1672 Afer_1673 PF01588 Putative tRNA binding domain Afer_1673 PF03147 Ferredoxin-fold anticodon binding domain Afer_1673 PF03483 B3/4 domain Afer_1673 PF03484 tRNA synthetase B5 domain Afer_1674 PF01409 tRNA synthetases class II core domain (F) Afer_1674 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Afer_1675 PF00588 SpoU rRNA Methylase family Afer_1676 PF00453 Ribosomal protein L20 Afer_1677 PF01632 Ribosomal protein L35 Afer_1678 PF00707 Translation initiation factor IF-3, C-terminal domain Afer_1678 PF05198 Translation initiation factor IF-3, N-terminal domain Afer_1681 PF01634 ATP phosphoribosyltransferase Afer_1681 PF08029 HisG, C-terminal domain Afer_1682 PF00885 6,7-dimethyl-8-ribityllumazine synthase Afer_1683 PF00925 GTP cyclohydrolase II Afer_1683 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Afer_1684 PF00677 Lumazine binding domain Afer_1685 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Afer_1685 PF01872 RibD C-terminal domain Afer_1686 PF00994 Probable molybdopterin binding domain Afer_1687 PF00551 Formyl transferase Afer_1687 PF02911 Formyl transferase, C-terminal domain Afer_1688 PF01327 Polypeptide deformylase Afer_1692 PF00438 S-adenosylmethionine synthetase, N-terminal domain Afer_1692 PF02772 S-adenosylmethionine synthetase, central domain Afer_1692 PF02773 S-adenosylmethionine synthetase, C-terminal domain Afer_1693 PF02441 Flavoprotein Afer_1693 PF04127 DNA / pantothenate metabolism flavoprotein Afer_1694 PF01192 RNA polymerase Rpb6 Afer_1695 PF00625 Guanylate kinase Afer_1697 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Afer_1698 PF01180 Dihydroorotate dehydrogenase Afer_1699 PF02142 MGS-like domain Afer_1699 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Afer_1699 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Afer_1700 PF00117 Glutamine amidotransferase class-I Afer_1700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Afer_1701 PF01979 Amidohydrolase family Afer_1702 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Afer_1702 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Afer_1703 PF00156 Phosphoribosyl transferase domain Afer_1707 PF00115 Cytochrome C and Quinol oxidase polypeptide I Afer_1708 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Afer_1710 PF08534 Redoxin Afer_1711 PF01040 UbiA prenyltransferase family Afer_1712 PF00557 Metallopeptidase family M24 Afer_1712 PF01321 Creatinase/Prolidase N-terminal domain Afer_1713 PF01132 Elongation factor P (EF-P) OB domain Afer_1713 PF08207 Elongation factor P (EF-P) KOW-like domain Afer_1713 PF09285 Elongation factor P, C-terminal Afer_1714 PF01029 NusB family Afer_1716 PF01220 Dehydroquinase class II Afer_1717 PF01761 3-dehydroquinate synthase Afer_1718 PF01264 Chorismate synthase Afer_1719 PF01478 Type IV leader peptidase family Afer_1720 PF13350 Tyrosine phosphatase family Afer_1721 PF12802 MarR family Afer_1722 PF04264 YceI-like domain Afer_1723 PF01106 NifU-like domain Afer_1724 PF13535 ATP-grasp domain Afer_1725 PF04055 Radical SAM superfamily Afer_1726 PF13245 Part of AAA domain Afer_1726 PF13361 UvrD-like helicase C-terminal domain Afer_1727 PF03372 Endonuclease/Exonuclease/phosphatase family Afer_1728 PF07977 FabA-like domain Afer_1729 PF06348 Afer_1729 Afer_1731 PF00563 EAL domain Afer_1732 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Afer_1732 PF00676 Dehydrogenase E1 component Afer_1732 PF02779 Transketolase, pyrimidine binding domain Afer_1732 PF16078 Afer_1732 Afer_1732 PF16870 Afer_1732 Afer_1733 PF12697 Alpha/beta hydrolase family Afer_1734 PF00781 Diacylglycerol kinase catalytic domain Afer_1735 PF01370 NAD dependent epimerase/dehydratase family Afer_1735 PF08338 Domain of unknown function (DUF1731) Afer_1736 PF00011 Hsp20/alpha crystallin family Afer_1737 PF03109 Afer_1737 Afer_1739 PF01040 UbiA prenyltransferase family Afer_1740 PF01565 FAD binding domain Afer_1741 PF00106 short chain dehydrogenase Afer_1742 PF08486 Afer_1742 Afer_1744 PF00534 Glycosyl transferases group 1 Afer_1745 PF13692 Glycosyl transferases group 1 Afer_1746 PF00534 Glycosyl transferases group 1 Afer_1747 PF00005 ABC transporter Afer_1748 PF01061 Afer_1748 Afer_1749 PF00574 Clp protease Afer_1750 PF01725 Ham1 family Afer_1751 PF01138 3' exoribonuclease family, domain 1 Afer_1751 PF03725 3' exoribonuclease family, domain 2 Afer_1752 PF01177 Asp/Glu/Hydantoin racemase Afer_1753 PF14464 Prokaryotic homologs of the JAB domain Afer_1754 PF01668 SmpB protein Afer_1761 PF00005 ABC transporter Afer_1762 PF00472 RF-1 domain Afer_1762 PF03462 PCRF domain Afer_1763 PF01043 SecA preprotein cross-linking domain Afer_1763 PF07516 SecA Wing and Scaffold domain Afer_1763 PF07517 SecA DEAD-like domain Afer_1764 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Afer_1764 PF16321 Afer_1764 Afer_1765 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Afer_1765 PF05221 S-adenosyl-L-homocysteine hydrolase Afer_1766 PF01380 SIS domain Afer_1766 PF10432 Bacterial phospho-glucose isomerase C-terminal region Afer_1767 PF03966 Trm112p-like protein Afer_1768 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Afer_1768 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Afer_1768 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Afer_1768 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Afer_1770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Afer_1770 PF02770 Acyl-CoA dehydrogenase, middle domain Afer_1770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Afer_1772 PF04203 Sortase family Afer_1774 PF01527 Transposase Afer_1775 PF00665 Integrase core domain Afer_1775 PF13276 Afer_1775 Afer_1777 PF03328 HpcH/HpaI aldolase/citrate lyase family Afer_1778 PF00128 Alpha amylase, catalytic domain Afer_1778 PF16657 Afer_1778 Afer_1779 PF00378 Enoyl-CoA hydratase/isomerase family Afer_1780 PF03308 ArgK protein Afer_1781 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Afer_1782 PF07690 Major Facilitator Superfamily Afer_1783 PF01738 Dienelactone hydrolase family Afer_1784 PF01243 Pyridoxamine 5'-phosphate oxidase Afer_1786 PF00206 Lyase Afer_1786 PF10415 Fumarase C C-terminus Afer_1787 PF00107 Zinc-binding dehydrogenase Afer_1787 PF08240 Alcohol dehydrogenase GroES-like domain Afer_1789 PF00440 Bacterial regulatory proteins, tetR family Afer_1790 PF00326 Prolyl oligopeptidase family Afer_1791 PF01642 Methylmalonyl-CoA mutase Afer_1792 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Afer_1793 PF13563 2'-5' RNA ligase superfamily Afer_1794 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Afer_1795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Afer_1795 PF02874 ATP synthase alpha/beta family, beta-barrel domain Afer_1796 PF00231 ATP synthase Afer_1797 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Afer_1797 PF00306 ATP synthase alpha/beta chain, C terminal domain Afer_1797 PF02874 ATP synthase alpha/beta family, beta-barrel domain Afer_1798 PF00213 ATP synthase delta (OSCP) subunit Afer_1799 PF00430 ATP synthase B/B' CF(0) Afer_1800 PF00137 ATP synthase subunit C Afer_1801 PF00119 ATP synthase A chain Afer_1804 PF00953 Glycosyl transferase family 4 Afer_1805 PF00464 Serine hydroxymethyltransferase Afer_1806 PF01300 Telomere recombination Afer_1807 PF05175 Methyltransferase small domain Afer_1808 PF00472 RF-1 domain Afer_1808 PF03462 PCRF domain Afer_1810 PF01197 Ribosomal protein L31 Afer_1811 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Afer_1811 PF07497 Rho termination factor, RNA-binding domain Afer_1812 PF00291 Pyridoxal-phosphate dependent enzyme Afer_1813 PF00742 Homoserine dehydrogenase Afer_1813 PF01842 ACT domain Afer_1813 PF03447 Homoserine dehydrogenase, NAD binding domain Afer_1814 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Afer_1814 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Afer_1815 PF00750 tRNA synthetases class I (R) Afer_1815 PF03485 Arginyl tRNA synthetase N terminal domain Afer_1815 PF05746 DALR anticodon binding domain Afer_1816 PF01225 Mur ligase family, catalytic domain Afer_1816 PF02875 Mur ligase family, glutamate ligase domain Afer_1816 PF08245 Mur ligase middle domain Afer_1817 PF00535 Glycosyl transferase family 2 Afer_1818 PF09335 Afer_1818 Afer_1819 PF02416 mttA/Hcf106 family Afer_1820 PF08240 Alcohol dehydrogenase GroES-like domain Afer_1820 PF13602 Zinc-binding dehydrogenase Afer_1821 PF02423 Ornithine cyclodeaminase/mu-crystallin family Afer_1822 PF12270 Afer_1822 Afer_1823 PF00115 Cytochrome C and Quinol oxidase polypeptide I Afer_1824 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Afer_1824 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Afer_1825 PF13631 Cytochrome b(N-terminal)/b6/petB Afer_1826 PF00355 Rieske [2Fe-2S] domain Afer_1827 PF00034 Cytochrome c Afer_1827 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Afer_1828 PF00510 Cytochrome c oxidase subunit III Afer_1829 PF13245 Part of AAA domain Afer_1830 PF01208 Uroporphyrinogen decarboxylase (URO-D) Afer_1831 PF01593 Flavin containing amine oxidoreductase Afer_1832 PF02277 Phosphoribosyltransferase Afer_1833 PF04138 Afer_1833 Afer_1834 PF13622 Thioesterase-like superfamily Afer_1835 PF00285 Citrate synthase Afer_1836 PF00583 Acetyltransferase (GNAT) family Afer_1837 PF09754 PAC2 family Afer_1838 PF00293 NUDIX domain Afer_1838 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal Afer_1840 PF09383 NIL domain Afer_1841 PF02568 Thiamine biosynthesis protein (ThiI) Afer_1842 PF01609 Transposase DDE domain Afer_1842 PF05598 Afer_1842 Afer_1842 PF13751 Afer_1842 Afer_1843 PF06778 Chlorite dismutase Afer_1844 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1844 PF01434 Peptidase family M41 Afer_1846 PF00118 TCP-1/cpn60 chaperonin family Afer_1847 PF02597 ThiS family Afer_1848 PF00291 Pyridoxal-phosphate dependent enzyme Afer_1849 PF00982 Glycosyltransferase family 20 Afer_1850 PF02358 Trehalose-phosphatase Afer_1851 PF00440 Bacterial regulatory proteins, tetR family Afer_1852 PF12804 MobA-like NTP transferase domain Afer_1853 PF04055 Radical SAM superfamily Afer_1853 PF06463 Molybdenum Cofactor Synthesis C Afer_1853 PF13353 4Fe-4S single cluster domain Afer_1854 PF01967 MoaC family Afer_1856 PF01022 Bacterial regulatory protein, arsR family Afer_1857 PF02040 Afer_1857 Afer_1858 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_1858 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1859 PF01964 ThiC family Afer_1863 PF01527 Transposase Afer_1864 PF01695 IstB-like ATP binding protein Afer_1865 PF00665 Integrase core domain Afer_1866 PF04555 Afer_1866 Afer_1868 PF13470 Afer_1868 Afer_1869 PF00436 Single-strand binding protein family Afer_1871 PF03699 Afer_1871 Afer_1873 PF05362 Lon protease (S16) C-terminal proteolytic domain Afer_1874 PF00596 Class II Aldolase and Adducin N-terminal domain Afer_1875 PF02627 Carboxymuconolactone decarboxylase family Afer_1876 PF01047 MarR family Afer_1878 PF01061 Afer_1878 Afer_1879 PF00005 ABC transporter Afer_1879 PF13732 Afer_1879 Afer_1880 PF00056 lactate/malate dehydrogenase, NAD binding domain Afer_1880 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Afer_1881 PF00180 Isocitrate/isopropylmalate dehydrogenase Afer_1882 PF10103 Uncharacterised conserved protein (DUF2342) Afer_1884 PF02391 MoaE protein Afer_1886 PF06723 MreB/Mbl protein Afer_1888 PF13289 Afer_1888 Afer_1894 PF01527 Transposase Afer_1896 PF13646 HEAT repeats Afer_1897 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Afer_1898 PF00795 Carbon-nitrogen hydrolase Afer_1899 PF00588 SpoU rRNA Methylase family Afer_1899 PF08032 RNA 2'-O ribose methyltransferase substrate binding Afer_1900 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Afer_1900 PF02542 YgbB family Afer_1901 PF02559 CarD-like/TRCF domain Afer_1902 PF02457 DisA bacterial checkpoint controller nucleotide-binding Afer_1902 PF10635 DisA bacterial checkpoint controller linker region Afer_1903 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1903 PF02861 Clp amino terminal domain Afer_1903 PF07724 AAA domain (Cdc48 subfamily) Afer_1903 PF10431 C-terminal, D2-small domain, of ClpB protein Afer_1905 PF00348 Polyprenyl synthetase Afer_1906 PF00152 tRNA synthetases class II (D, K and N) Afer_1906 PF01336 OB-fold nucleic acid binding domain Afer_1907 PF03309 Type III pantothenate kinase Afer_1908 PF02569 Pantoate-beta-alanine ligase Afer_1909 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Afer_1910 PF02152 Dihydroneopterin aldolase Afer_1911 PF00809 Pterin binding enzyme Afer_1912 PF01227 GTP cyclohydrolase I Afer_1913 PF00156 Phosphoribosyl transferase domain Afer_1914 PF01171 PP-loop family Afer_1915 PF10103 Uncharacterised conserved protein (DUF2342) Afer_1917 PF13490 Putative zinc-finger Afer_1918 PF04542 Sigma-70 region 2 Afer_1918 PF08281 Sigma-70, region 4 Afer_1920 PF02223 Thymidylate kinase Afer_1921 PF01131 DNA topoisomerase Afer_1921 PF01751 Toprim domain Afer_1921 PF13368 Afer_1921 Afer_1922 PF13520 Amino acid permease Afer_1923 PF02254 TrkA-N domain Afer_1924 PF02080 TrkA-C domain Afer_1924 PF02254 TrkA-N domain Afer_1925 PF12710 haloacid dehalogenase-like hydrolase Afer_1926 PF09852 Afer_1926 Afer_1927 PF00892 EamA-like transporter family Afer_1928 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Afer_1931 PF01381 Helix-turn-helix Afer_1931 PF12727 PBP superfamily domain Afer_1932 PF00005 ABC transporter Afer_1933 PF00528 Binding-protein-dependent transport system inner membrane component Afer_1934 PF13531 Bacterial extracellular solute-binding protein Afer_1935 PF00155 Aminotransferase class I and II Afer_1936 PF13649 Methyltransferase domain Afer_1937 PF00149 Calcineurin-like phosphoesterase Afer_1938 PF13476 AAA domain Afer_1939 PF01370 NAD dependent epimerase/dehydratase family Afer_1942 PF00156 Phosphoribosyl transferase domain Afer_1942 PF13522 Glutamine amidotransferase domain Afer_1943 PF00586 AIR synthase related protein, N-terminal domain Afer_1943 PF02769 AIR synthase related protein, C-terminal domain Afer_1946 PF07238 PilZ domain Afer_1947 PF00390 Malic enzyme, N-terminal domain Afer_1947 PF01842 ACT domain Afer_1947 PF03949 Malic enzyme, NAD binding domain Afer_1949 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Afer_1949 PF13641 Glycosyltransferase like family 2 Afer_1952 PF00586 AIR synthase related protein, N-terminal domain Afer_1952 PF02769 AIR synthase related protein, C-terminal domain Afer_1953 PF13507 CobB/CobQ-like glutamine amidotransferase domain Afer_1954 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Afer_1955 PF01259 SAICAR synthetase Afer_1956 PF00206 Lyase Afer_1956 PF10397 Adenylosuccinate lyase C-terminus Afer_1957 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Afer_1957 PF02843 Phosphoribosylglycinamide synthetase, C domain Afer_1957 PF02844 Phosphoribosylglycinamide synthetase, N domain Afer_1958 PF00709 Adenylosuccinate synthetase Afer_1959 PF00300 Histidine phosphatase superfamily (branch 1) Afer_1960 PF00012 Hsp70 protein Afer_1961 PF01025 GrpE Afer_1962 PF00226 DnaJ domain Afer_1962 PF00684 DnaJ central domain Afer_1962 PF01556 DnaJ C terminal domain Afer_1963 PF13411 MerR HTH family regulatory protein Afer_1964 PF00004 ATPase family associated with various cellular activities (AAA) Afer_1964 PF02861 Clp amino terminal domain Afer_1964 PF07724 AAA domain (Cdc48 subfamily) Afer_1964 PF10431 C-terminal, D2-small domain, of ClpB protein Afer_1966 PF01380 SIS domain Afer_1966 PF01418 Helix-turn-helix domain, rpiR family Afer_1967 PF00120 Glutamine synthetase, catalytic domain Afer_1968 PF00324 Amino acid permease Afer_1969 PF00324 Amino acid permease Afer_1970 PF03069 Acetamidase/Formamidase family Afer_1971 PF00535 Glycosyl transferase family 2 Afer_1971 PF13578 Methyltransferase domain Afer_1973 PF01527 Transposase Afer_1974 PF00535 Glycosyl transferase family 2 Afer_1975 PF00534 Glycosyl transferases group 1 Afer_1976 PF00534 Glycosyl transferases group 1 Afer_1978 PF02233 NAD(P) transhydrogenase beta subunit Afer_1979 PF12769 Domain of unknown function (DUF3814) Afer_1980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Afer_1980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Afer_1981 PF00072 Response regulator receiver domain Afer_1981 PF00196 Bacterial regulatory proteins, luxR family Afer_1983 PF00202 Aminotransferase class-III Afer_1984 PF00180 Isocitrate/isopropylmalate dehydrogenase Afer_1985 PF12802 MarR family Afer_1986 PF01828 Peptidase A4 family Afer_1987 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_1987 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Afer_1988 PF00310 Glutamine amidotransferases class-II Afer_1988 PF01493 GXGXG motif Afer_1988 PF01645 Conserved region in glutamate synthase Afer_1988 PF04898 Glutamate synthase central domain Afer_1990 PF02674 Afer_1990 Afer_1990 PF13365 Trypsin-like peptidase domain Afer_1991 PF00753 Metallo-beta-lactamase superfamily Afer_1992 PF01546 Peptidase family M20/M25/M40 Afer_1992 PF07687 Peptidase dimerisation domain Afer_1993 PF02646 Afer_1993 Afer_1994 PF00581 Rhodanese-like domain Afer_1995 PF00909 Ammonium Transporter Family Afer_1996 PF00581 Rhodanese-like domain Afer_1997 PF03631 Afer_1997 Afer_2000 PF13520 Amino acid permease Afer_2002 PF01565 FAD binding domain Afer_2002 PF02913 FAD linked oxidases, C-terminal domain Afer_2003 PF02754 Afer_2003 Afer_2003 PF13183 4Fe-4S dicluster domain Afer_2004 PF00392 Bacterial regulatory proteins, gntR family Afer_2006 PF00150 Cellulase (glycosyl hydrolase family 5) Afer_2006 PF00553 Cellulose binding domain Afer_2007 PF09623 Afer_2007 Afer_2008 PF00376 MerR family regulatory protein Afer_2008 PF09278 MerR, DNA binding Afer_2009 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Afer_2009 PF07992 Pyridine nucleotide-disulphide oxidoreductase Afer_2010 PF10013 Afer_2010 Afer_2010 PF11625 Protein of unknown function (DUF3253) Afer_2012 PF04244 Deoxyribodipyrimidine photo-lyase-related protein Afer_2014 PF13276 Afer_2014 Afer_2014 PF13683 Afer_2014 Afer_2015 PF01527 Transposase Afer_2016 PF01850 PIN domain Afer_2018 PF14437 Afer_2018 Afer_2019 PF03091 CutA1 divalent ion tolerance protein Afer_2021 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Afer_2022 PF00285 Citrate synthase Afer_2023 PF02515 CoA-transferase family III Afer_2024 PF01614 Bacterial transcriptional regulator Afer_2024 PF09339 IclR helix-turn-helix domain Afer_2025 PF01979 Amidohydrolase family Afer_2027 PF07690 Major Facilitator Superfamily Afer_2029 PF00005 ABC transporter Afer_2029 PF00664 ABC transporter transmembrane region Afer_2030 PF02195 ParB-like nuclease domain Afer_2031 PF13614 AAA domain Afer_2032 PF05598 Afer_2032 Afer_2032 PF13751 Afer_2032 Afer_2033 PF02527 rRNA small subunit methyltransferase G Afer_2034 PF01424 R3H domain Afer_2034 PF14804 Jag N-terminus Afer_2035 PF02096 60Kd inner membrane protein Afer_2036 PF01809 Afer_2036 Afer_2037 PF00825 Ribonuclease P Afer_2038 PF00468 Ribosomal protein L34