Afer_0001 SM00382 ATPases associated with a variety of cellular activities Afer_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Afer_0002 SM00480 DNA polymerase III beta subunit Afer_0005 SM00387 Histidine kinase-like ATPases Afer_0005 SM00433 TopoisomeraseII Afer_0006 SM00434 DNA Topoisomerase IV Afer_0020 SM00495 Chitin-binding domain type 3 Afer_0022 SM00052 Putative diguanylate phosphodiesterase Afer_0033 SM00530 Helix-turn-helix XRE-family like proteins Afer_0041 SM00305 Hint (Hedgehog/Intein) domain C-terminal region Afer_0041 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Afer_0041 SM00382 ATPases associated with a variety of cellular activities Afer_0072 SM01043 Bacterial transcriptional activator domain Afer_0075 SM00347 helix_turn_helix multiple antibiotic resistance protein Afer_0079 SM00881 CoA binding domain Afer_0081 SM00944 Pro-kumamolisin, activation domain Afer_0087 SM00220 Serine/Threonine protein kinases, catalytic domain Afer_0087 SM00740 Afer_0087 Afer_0088 SM00220 Serine/Threonine protein kinases, catalytic domain Afer_0088 SM00740 Afer_0088 Afer_0090 SM00331 Sigma factor PP2C-like phosphatases Afer_0090 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Afer_0091 SM00240 Forkhead associated domain Afer_0092 SM00240 Forkhead associated domain Afer_0098 SM01001 AIR carboxylase Afer_0102 SM00382 ATPases associated with a variety of cellular activities Afer_0103 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Afer_0103 SM00493 Afer_0103 Afer_0105 SM00829 Enoylreductase Afer_0112 SM00859 Semialdehyde dehydrogenase, NAD binding domain Afer_0120 SM00961 Ribulose bisphosphate carboxylase, small chain Afer_0124 SM00877 Afer_0124 Afer_0125 SM00877 Afer_0125 Afer_0126 SM00877 Afer_0126 Afer_0132 SM00327 von Willebrand factor (vWF) type A domain Afer_0140 SM00382 ATPases associated with a variety of cellular activities Afer_0162 SM00450 Rhodanese Homology Domain Afer_0164 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_0166 SM00861 Transketolase, pyrimidine binding domain Afer_0169 SM00354 helix_turn _helix lactose operon repressor Afer_0174 SM00382 ATPases associated with a variety of cellular activities Afer_0175 SM00382 ATPases associated with a variety of cellular activities Afer_0180 SM00421 helix_turn_helix, Lux Regulon Afer_0180 SM00448 cheY-homologous receiver domain Afer_0181 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Afer_0181 SM00387 Histidine kinase-like ATPases Afer_0182 SM00267 diguanylate cyclase Afer_0191 SM00382 ATPases associated with a variety of cellular activities Afer_0196 SM00944 Pro-kumamolisin, activation domain Afer_0197 SM00829 Enoylreductase Afer_0200 SM00448 cheY-homologous receiver domain Afer_0200 SM00862 Transcriptional regulatory protein, C terminal Afer_0201 SM00387 Histidine kinase-like ATPases Afer_0201 SM00388 His Kinase A (phosphoacceptor) domain Afer_0205 SM00382 ATPases associated with a variety of cellular activities Afer_0212 SM00073 Histidine Phosphotransfer domain Afer_0212 SM00260 Two component signalling adaptor domain Afer_0212 SM00387 Histidine kinase-like ATPases Afer_0212 SM01231 Afer_0212 Afer_0213 SM00260 Two component signalling adaptor domain Afer_0214 SM00448 cheY-homologous receiver domain Afer_0215 SM00138 Methyltransferase, chemotaxis proteins Afer_0216 SM00345 helix_turn_helix gluconate operon transcriptional repressor Afer_0217 SM00448 cheY-homologous receiver domain Afer_0224 SM00267 diguanylate cyclase Afer_0226 SM00756 Afer_0226 Afer_0236 SM00448 cheY-homologous receiver domain Afer_0241 SM00862 Transcriptional regulatory protein, C terminal Afer_0242 SM01230 Afer_0242 Afer_0243 SM01230 Afer_0243 Afer_0252 SM01004 Delta-aminolevulinic acid dehydratase Afer_0260 SM00855 Phosphoglycerate mutase family Afer_0265 SM00829 Enoylreductase Afer_0270 SM00382 ATPases associated with a variety of cellular activities Afer_0274 SM00530 Helix-turn-helix XRE-family like proteins Afer_0286 SM00487 DEAD-like helicases superfamily Afer_0286 SM00490 helicase superfamily c-terminal domain Afer_0291 SM00831 Cation transporter/ATPase, N-terminus Afer_0306 SM00840 Afer_0306 Afer_0309 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Afer_0310 SM00327 von Willebrand factor (vWF) type A domain Afer_0320 SM00881 CoA binding domain Afer_0322 SM00798 AICARFT/IMPCHase bienzyme Afer_0322 SM00851 MGS-like domain Afer_0329 SM01221 Afer_0329 Afer_0329 SM01222 Afer_0329 Afer_0332 SM00382 ATPases associated with a variety of cellular activities Afer_0342 SM00421 helix_turn_helix, Lux Regulon Afer_0342 SM00448 cheY-homologous receiver domain Afer_0345 SM00382 ATPases associated with a variety of cellular activities Afer_0352 SM00387 Histidine kinase-like ATPases Afer_0353 SM00893 Electron transfer flavoprotein domain Afer_0354 SM00893 Electron transfer flavoprotein domain Afer_0368 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Afer_0369 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Afer_0369 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Afer_0381 SM00478 endonuclease III Afer_0386 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Afer_0386 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Afer_0387 SM00649 Ribosomal protein L11/L12 Afer_0392 SM00663 RNA polymerase I subunit A N-terminus Afer_0395 SM00838 Elongation factor G C-terminus Afer_0395 SM00889 Elongation factor G, domain IV Afer_0397 SM01403 Afer_0397 Afer_0401 SM01382 Afer_0401 Afer_0401 SM01383 Afer_0401 Afer_0404 SM00322 K homology RNA-binding domain Afer_0408 SM01374 Afer_0408 Afer_0409 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Afer_0421 SM00316 Ribosomal protein S1-like RNA-binding domain Afer_0425 SM00363 S4 RNA-binding domain Afer_0425 SM01390 Afer_0425 Afer_0426 SM00662 RNA polymerases D Afer_0437 SM01005 Alanine racemase, C-terminal domain Afer_0438 SM00986 Uracil DNA glycosylase superfamily Afer_0438 SM00987 UreE urease accessory protein, C-terminal domain Afer_0443 SM00883 Chaperonin 10 Kd subunit Afer_0459 SM01240 Afer_0459 Afer_0474 SM00481 DNA polymerase alpha chain like domain Afer_0475 SM00116 Domain in cystathionine beta-synthase and other proteins. Afer_0475 SM00924 MgtE intracellular N domain Afer_0479 SM00861 Transketolase, pyrimidine binding domain Afer_0486 SM00852 Probable molybdopterin binding domain Afer_0488 SM00834 Putative regulatory protein Afer_0504 SM00382 ATPases associated with a variety of cellular activities Afer_0505 SM00382 ATPases associated with a variety of cellular activities Afer_0508 SM00448 cheY-homologous receiver domain Afer_0511 SM00387 Histidine kinase-like ATPases Afer_0522 SM00382 ATPases associated with a variety of cellular activities Afer_0523 SM00382 ATPases associated with a variety of cellular activities Afer_0527 SM00650 Ribosomal RNA adenine dimethylases Afer_0533 SM00382 ATPases associated with a variety of cellular activities Afer_0557 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Afer_0557 SM00387 Histidine kinase-like ATPases Afer_0557 SM00388 His Kinase A (phosphoacceptor) domain Afer_0558 SM00448 cheY-homologous receiver domain Afer_0558 SM00862 Transcriptional regulatory protein, C terminal Afer_0559 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Afer_0563 SM00382 ATPases associated with a variety of cellular activities Afer_0574 SM00344 helix_turn_helix ASNC type Afer_0585 SM00347 helix_turn_helix multiple antibiotic resistance protein Afer_0622 SM00919 Malic enzyme, NAD binding domain Afer_0622 SM01274 Afer_0622 Afer_0632 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Afer_0636 SM00316 Ribosomal protein S1-like RNA-binding domain Afer_0641 SM00904 Riboflavin kinase Afer_0642 SM01387 Afer_0642 Afer_0643 SM00316 Ribosomal protein S1-like RNA-binding domain Afer_0643 SM00322 K homology RNA-binding domain Afer_0646 SM01130 Afer_0646 Afer_0647 SM00849 Metallo-beta-lactamase superfamily Afer_0648 SM00382 ATPases associated with a variety of cellular activities Afer_0648 SM00843 Afer_0648 Afer_0652 SM00852 Probable molybdopterin binding domain Afer_0653 SM00382 ATPases associated with a variety of cellular activities Afer_0654 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_0655 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Afer_0667 SM00382 ATPases associated with a variety of cellular activities Afer_0684 SM00507 HNH nucleases Afer_0698 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Afer_0698 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Afer_0702 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Afer_0702 SM00387 Histidine kinase-like ATPases Afer_0702 SM00388 His Kinase A (phosphoacceptor) domain Afer_0703 SM00448 cheY-homologous receiver domain Afer_0703 SM00862 Transcriptional regulatory protein, C terminal Afer_0705 SM00849 Metallo-beta-lactamase superfamily Afer_0715 SM00822 Afer_0715 Afer_0719 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_0721 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Afer_0723 SM01018 B12 binding domain Afer_0728 SM00450 Rhodanese Homology Domain Afer_0730 SM00878 Biotin carboxylase C-terminal domain Afer_0753 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Afer_0753 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Afer_0756 SM00014 Acid phosphatase homologues Afer_0763 SM00382 ATPases associated with a variety of cellular activities Afer_0763 SM00994 ClpX C4-type zinc finger Afer_0763 SM01086 C-terminal, D2-small domain, of ClpB protein Afer_0765 SM00562 Afer_0765 Afer_0774 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Afer_0777 SM00382 ATPases associated with a variety of cellular activities Afer_0778 SM00382 ATPases associated with a variety of cellular activities Afer_0783 SM00382 ATPases associated with a variety of cellular activities Afer_0813 SM00849 Metallo-beta-lactamase superfamily Afer_0817 SM00327 von Willebrand factor (vWF) type A domain Afer_0817 SM00382 ATPases associated with a variety of cellular activities Afer_0818 SM00986 Uracil DNA glycosylase superfamily Afer_0818 SM00987 UreE urease accessory protein, C-terminal domain Afer_0820 SM00052 Putative diguanylate phosphodiesterase Afer_0820 SM00267 diguanylate cyclase Afer_0821 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Afer_0821 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Afer_0824 SM00861 Transketolase, pyrimidine binding domain Afer_0844 SM00382 ATPases associated with a variety of cellular activities Afer_0845 SM00465 GIY-YIG type nucleases (URI domain) Afer_0849 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Afer_0853 SM00091 PAS domain Afer_0863 SM00479 Afer_0863 Afer_0870 SM00220 Serine/Threonine protein kinases, catalytic domain Afer_0871 SM01230 Afer_0871 Afer_0873 SM00331 Sigma factor PP2C-like phosphatases Afer_0873 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Afer_0878 SM01120 Afer_0878 Afer_0890 SM00382 ATPases associated with a variety of cellular activities Afer_0893 SM00880 Afer_0893 Afer_0895 SM01133 Afer_0895 Afer_0900 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_0905 SM00650 Ribosomal RNA adenine dimethylases Afer_0907 SM00382 ATPases associated with a variety of cellular activities Afer_0918 SM00487 DEAD-like helicases superfamily Afer_0918 SM00490 helicase superfamily c-terminal domain Afer_0918 SM01142 Afer_0918 Afer_0927 SM00108 Bulb-type mannose-specific lectin Afer_0940 SM00345 helix_turn_helix gluconate operon transcriptional repressor Afer_0947 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Afer_0947 SM00954 Region found in RelA / SpoT proteins Afer_0951 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Afer_0952 SM00732 Likely ribonuclease with RNase H fold. Afer_0969 SM00893 Electron transfer flavoprotein domain Afer_0970 SM00893 Electron transfer flavoprotein domain Afer_0984 SM01101 Afer_0984 Afer_0989 SM00487 DEAD-like helicases superfamily Afer_0992 SM00382 ATPases associated with a variety of cellular activities Afer_0995 SM00354 helix_turn _helix lactose operon repressor Afer_1005 SM01118 Afer_1005 Afer_1010 SM00829 Enoylreductase Afer_1013 SM00487 DEAD-like helicases superfamily Afer_1013 SM00490 helicase superfamily c-terminal domain Afer_1014 SM00450 Rhodanese Homology Domain Afer_1014 SM00849 Metallo-beta-lactamase superfamily Afer_1020 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Afer_1025 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Afer_1026 SM00450 Rhodanese Homology Domain Afer_1032 SM00878 Biotin carboxylase C-terminal domain Afer_1037 SM00347 helix_turn_helix multiple antibiotic resistance protein Afer_1044 SM00382 ATPases associated with a variety of cellular activities Afer_1052 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_1054 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_1059 SM00382 ATPases associated with a variety of cellular activities Afer_1060 SM00382 ATPases associated with a variety of cellular activities Afer_1071 SM00944 Pro-kumamolisin, activation domain Afer_1076 SM00382 ATPases associated with a variety of cellular activities Afer_1078 SM00267 diguanylate cyclase Afer_1079 SM00316 Ribosomal protein S1-like RNA-binding domain Afer_1080 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Afer_1080 SM00475 5'-3' exonuclease Afer_1080 SM00482 DNA polymerase A domain Afer_1081 SM00448 cheY-homologous receiver domain Afer_1081 SM01012 Afer_1081 Afer_1082 SM00849 Metallo-beta-lactamase superfamily Afer_1085 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Afer_1087 SM00822 Afer_1087 Afer_1089 SM00825 Beta-ketoacyl synthase Afer_1093 SM01350 Afer_1093 Afer_1099 SM00448 cheY-homologous receiver domain Afer_1099 SM00862 Transcriptional regulatory protein, C terminal Afer_1100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Afer_1100 SM00387 Histidine kinase-like ATPases Afer_1100 SM00388 His Kinase A (phosphoacceptor) domain Afer_1101 SM00052 Putative diguanylate phosphodiesterase Afer_1101 SM00267 diguanylate cyclase Afer_1105 SM00883 Chaperonin 10 Kd subunit Afer_1125 SM00240 Forkhead associated domain Afer_1126 SM00422 helix_turn_helix, mercury resistance Afer_1136 SM00382 ATPases associated with a variety of cellular activities Afer_1138 SM00363 S4 RNA-binding domain Afer_1139 SM00014 Acid phosphatase homologues Afer_1147 SM00382 ATPases associated with a variety of cellular activities Afer_1156 SM00052 Putative diguanylate phosphodiesterase Afer_1156 SM00267 diguanylate cyclase Afer_1172 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Afer_1172 SM00450 Rhodanese Homology Domain Afer_1173 SM00448 cheY-homologous receiver domain Afer_1173 SM00862 Transcriptional regulatory protein, C terminal Afer_1174 SM00387 Histidine kinase-like ATPases Afer_1174 SM00388 His Kinase A (phosphoacceptor) domain Afer_1187 SM00855 Phosphoglycerate mutase family Afer_1191 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Afer_1191 SM00267 diguanylate cyclase Afer_1200 SM00881 CoA binding domain Afer_1206 SM00382 ATPases associated with a variety of cellular activities Afer_1209 SM00363 S4 RNA-binding domain Afer_1215 SM00382 ATPases associated with a variety of cellular activities Afer_1216 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Afer_1226 SM00382 ATPases associated with a variety of cellular activities Afer_1226 SM00838 Elongation factor G C-terminus Afer_1226 SM00889 Elongation factor G, domain IV Afer_1229 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Afer_1235 SM00518 AP endonuclease family 2 Afer_1241 SM00864 Tubulin/FtsZ family, GTPase domain Afer_1241 SM00865 Tubulin/FtsZ family, C-terminal domain Afer_1259 SM00014 Acid phosphatase homologues Afer_1261 SM00400 zinc finger Afer_1261 SM00493 Afer_1261 Afer_1269 SM00116 Domain in cystathionine beta-synthase and other proteins. Afer_1269 SM01091 Transporter associated domain Afer_1274 SM00858 Afer_1274 Afer_1276 SM00849 Metallo-beta-lactamase superfamily Afer_1277 SM00382 ATPases associated with a variety of cellular activities Afer_1290 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_1291 SM00530 Helix-turn-helix XRE-family like proteins Afer_1293 SM00271 DnaJ molecular chaperone homology domain Afer_1296 SM00838 Elongation factor G C-terminus Afer_1300 SM00900 Afer_1300 Afer_1310 SM00382 ATPases associated with a variety of cellular activities Afer_1326 SM00345 helix_turn_helix gluconate operon transcriptional repressor Afer_1326 SM00895 Afer_1326 Afer_1327 SM00382 ATPases associated with a variety of cellular activities Afer_1328 SM00642 Alpha-amylase domain Afer_1332 SM00354 helix_turn _helix lactose operon repressor Afer_1337 SM00478 endonuclease III Afer_1338 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Afer_1343 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Afer_1344 SM00849 Metallo-beta-lactamase superfamily Afer_1350 SM00563 Phosphate acyltransferases Afer_1356 SM00363 S4 RNA-binding domain Afer_1364 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Afer_1383 SM00382 ATPases associated with a variety of cellular activities Afer_1385 SM00052 Putative diguanylate phosphodiesterase Afer_1385 SM00267 diguanylate cyclase Afer_1396 SM00487 DEAD-like helicases superfamily Afer_1396 SM00490 helicase superfamily c-terminal domain Afer_1401 SM00052 Putative diguanylate phosphodiesterase Afer_1402 SM00052 Putative diguanylate phosphodiesterase Afer_1409 SM00345 helix_turn_helix gluconate operon transcriptional repressor Afer_1409 SM00866 Afer_1409 Afer_1429 SM00563 Phosphate acyltransferases Afer_1439 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Afer_1444 SM00822 Afer_1444 Afer_1446 SM00421 helix_turn_helix, Lux Regulon Afer_1446 SM00448 cheY-homologous receiver domain Afer_1460 SM00487 DEAD-like helicases superfamily Afer_1460 SM00490 helicase superfamily c-terminal domain Afer_1461 SM00478 endonuclease III Afer_1467 SM00465 GIY-YIG type nucleases (URI domain) Afer_1467 SM00479 Afer_1467 Afer_1469 SM00052 Putative diguanylate phosphodiesterase Afer_1469 SM00267 diguanylate cyclase Afer_1470 SM00267 diguanylate cyclase Afer_1475 SM01001 AIR carboxylase Afer_1484 SM00858 Afer_1484 Afer_1502 SM00382 ATPases associated with a variety of cellular activities Afer_1502 SM00962 SRP54-type protein, GTPase domain Afer_1502 SM00963 SRP54-type protein, helical bundle domain Afer_1503 SM00382 ATPases associated with a variety of cellular activities Afer_1503 SM00962 SRP54-type protein, GTPase domain Afer_1503 SM00963 SRP54-type protein, helical bundle domain Afer_1508 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Afer_1508 SM01232 Afer_1508 Afer_1509 SM00358 Double-stranded RNA binding motif Afer_1509 SM00535 Ribonuclease III family Afer_1516 SM00487 DEAD-like helicases superfamily Afer_1516 SM00490 helicase superfamily c-terminal domain Afer_1517 SM01120 Afer_1517 Afer_1517 SM01121 Afer_1517 Afer_1525 SM00052 Putative diguanylate phosphodiesterase Afer_1525 SM00267 diguanylate cyclase Afer_1529 SM00917 LeuA allosteric (dimerisation) domain Afer_1536 SM01329 Afer_1536 Afer_1538 SM00917 LeuA allosteric (dimerisation) domain Afer_1549 SM00845 GatB domain Afer_1553 SM00220 Serine/Threonine protein kinases, catalytic domain Afer_1553 SM00740 Afer_1553 Afer_1554 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Afer_1554 SM00292 breast cancer carboxy-terminal domain Afer_1554 SM00532 Ligase N family Afer_1566 SM00327 von Willebrand factor (vWF) type A domain Afer_1567 SM00382 ATPases associated with a variety of cellular activities Afer_1568 SM01092 CO dehydrogenase flavoprotein C-terminal domain Afer_1569 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Afer_1572 SM00244 prohibitin homologues Afer_1574 SM00382 ATPases associated with a variety of cellular activities Afer_1576 SM00448 cheY-homologous receiver domain Afer_1576 SM00862 Transcriptional regulatory protein, C terminal Afer_1577 SM00382 ATPases associated with a variety of cellular activities Afer_1577 SM00387 Histidine kinase-like ATPases Afer_1577 SM00388 His Kinase A (phosphoacceptor) domain Afer_1585 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Afer_1589 SM01192 Afer_1589 Afer_1589 SM01193 Afer_1589 Afer_1594 SM00487 DEAD-like helicases superfamily Afer_1594 SM00490 helicase superfamily c-terminal domain Afer_1594 SM00982 Afer_1594 Afer_1594 SM01058 CarD-like/TRCF domain Afer_1597 SM01400 Afer_1597 Afer_1606 SM00382 ATPases associated with a variety of cellular activities Afer_1611 SM00481 DNA polymerase alpha chain like domain Afer_1614 SM00345 helix_turn_helix gluconate operon transcriptional repressor Afer_1614 SM00866 Afer_1614 Afer_1615 SM00341 Helicase and RNase D C-terminal Afer_1615 SM00474 3'-5' exonuclease Afer_1630 SM00822 Afer_1630 Afer_1638 SM00481 DNA polymerase alpha chain like domain Afer_1647 SM00857 Resolvase, N terminal domain Afer_1665 SM00859 Semialdehyde dehydrogenase, NAD binding domain Afer_1670 SM00460 Transglutaminase/protease-like homologues Afer_1673 SM00873 B3/4 domain Afer_1673 SM00874 tRNA synthetase B5 domain Afer_1673 SM00896 Ferredoxin-fold anticodon binding domain Afer_1675 SM00967 RNA 2'-O ribose methyltransferase substrate binding Afer_1686 SM00852 Probable molybdopterin binding domain Afer_1694 SM01409 Afer_1694 Afer_1695 SM00072 Guanylate kinase homologues. Afer_1697 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Afer_1699 SM00851 MGS-like domain Afer_1699 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Afer_1700 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Afer_1713 SM00841 Elongation factor P, C-terminal Afer_1713 SM01185 Afer_1713 Afer_1721 SM00347 helix_turn_helix multiple antibiotic resistance protein Afer_1722 SM00867 YceI-like domain Afer_1725 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_1731 SM00052 Putative diguanylate phosphodiesterase Afer_1732 SM00861 Transketolase, pyrimidine binding domain Afer_1734 SM00046 Diacylglycerol kinase catalytic domain (presumed) Afer_1741 SM00822 Afer_1741 Afer_1747 SM00382 ATPases associated with a variety of cellular activities Afer_1753 SM00232 JAB/MPN domain Afer_1761 SM00382 ATPases associated with a variety of cellular activities Afer_1762 SM00937 Afer_1762 Afer_1763 SM00957 SecA DEAD-like domain Afer_1763 SM00958 SecA preprotein cross-linking domain Afer_1765 SM00996 S-adenosyl-L-homocysteine hydrolase Afer_1765 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Afer_1778 SM00642 Alpha-amylase domain Afer_1787 SM00829 Enoylreductase Afer_1795 SM00382 ATPases associated with a variety of cellular activities Afer_1808 SM00937 Afer_1808 Afer_1811 SM00357 Cold shock protein domain Afer_1811 SM00382 ATPases associated with a variety of cellular activities Afer_1815 SM00836 DALR anticodon binding domain Afer_1815 SM01016 Arginyl tRNA synthetase N terminal dom Afer_1820 SM00829 Enoylreductase Afer_1840 SM00930 Afer_1840 Afer_1844 SM00382 ATPases associated with a variety of cellular activities Afer_1853 SM00729 Elongator protein 3, MiaB family, Radical SAM Afer_1856 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Afer_1864 SM00382 ATPases associated with a variety of cellular activities Afer_1868 SM00670 Large family of predicted nucleotide-binding domains Afer_1874 SM01007 Class II Aldolase and Adducin N-terminal domain Afer_1876 SM00347 helix_turn_helix multiple antibiotic resistance protein Afer_1879 SM00382 ATPases associated with a variety of cellular activities Afer_1881 SM01329 Afer_1881 Afer_1896 SM00567 E-Z type HEAT repeats Afer_1899 SM00967 RNA 2'-O ribose methyltransferase substrate binding Afer_1901 SM01058 CarD-like/TRCF domain Afer_1903 SM00382 ATPases associated with a variety of cellular activities Afer_1903 SM01086 C-terminal, D2-small domain, of ClpB protein Afer_1910 SM00905 Dihydroneopterin aldolase Afer_1921 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Afer_1921 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Afer_1921 SM00493 Afer_1921 Afer_1931 SM00530 Helix-turn-helix XRE-family like proteins Afer_1932 SM00382 ATPases associated with a variety of cellular activities Afer_1941 SM00481 DNA polymerase alpha chain like domain Afer_1947 SM00919 Malic enzyme, NAD binding domain Afer_1947 SM01274 Afer_1947 Afer_1953 SM01211 Afer_1953 Afer_1956 SM00998 Adenylosuccinate lyase C-terminus Afer_1957 SM01209 Afer_1957 Afer_1957 SM01210 Afer_1957 Afer_1958 SM00788 Adenylosuccinate synthetase Afer_1959 SM00855 Phosphoglycerate mutase family Afer_1962 SM00271 DnaJ molecular chaperone homology domain Afer_1963 SM00422 helix_turn_helix, mercury resistance Afer_1964 SM00382 ATPases associated with a variety of cellular activities Afer_1964 SM01086 C-terminal, D2-small domain, of ClpB protein Afer_1967 SM01230 Afer_1967 Afer_1980 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Afer_1980 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Afer_1981 SM00421 helix_turn_helix, Lux Regulon Afer_1981 SM00448 cheY-homologous receiver domain Afer_1984 SM01329 Afer_1984 Afer_1991 SM00849 Metallo-beta-lactamase superfamily Afer_1994 SM00450 Rhodanese Homology Domain Afer_1996 SM00450 Rhodanese Homology Domain Afer_2004 SM00345 helix_turn_helix gluconate operon transcriptional repressor Afer_2006 SM00637 Afer_2006 Afer_2006 SM01063 Carbohydrate binding domain CBM49 Afer_2008 SM00422 helix_turn_helix, mercury resistance Afer_2024 SM00346 helix_turn_helix isocitrate lyase regulation Afer_2029 SM00382 ATPases associated with a variety of cellular activities Afer_2030 SM00470 ParB-like nuclease domain Afer_2034 SM00393 Putative single-stranded nucleic acids-binding domain Afer_2034 SM01245 Afer_2034 Afer_2036 SM01234 Afer_2036