PACID_00010 SM00382 ATPases associated with a variety of cellular activities PACID_00010 SM00760 Bacterial dnaA protein helix-turn-helix domain PACID_00020 SM00382 ATPases associated with a variety of cellular activities PACID_00050 SM00480 DNA polymerase III beta subunit PACID_00100 SM00387 Histidine kinase-like ATPases PACID_00100 SM00433 TopoisomeraseII PACID_00110 SM00434 DNA Topoisomerase IV PACID_00140 SM00354 helix_turn _helix lactose operon repressor PACID_00150 SM00382 ATPases associated with a variety of cellular activities PACID_00210 SM00382 ATPases associated with a variety of cellular activities PACID_00270 SM00530 Helix-turn-helix XRE-family like proteins PACID_00360 SM01038 Beta galactosidase small chain PACID_00380 SM00919 Malic enzyme, NAD binding domain PACID_00380 SM01274 PACID_00380 PACID_00400 SM00878 Biotin carboxylase C-terminal domain PACID_00430 SM00507 HNH nucleases PACID_00510 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins PACID_00640 SM00327 von Willebrand factor (vWF) type A domain PACID_00650 SM00327 von Willebrand factor (vWF) type A domain PACID_00730 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins PACID_00770 SM00530 Helix-turn-helix XRE-family like proteins PACID_00810 SM00382 ATPases associated with a variety of cellular activities PACID_00880 SM01007 Class II Aldolase and Adducin N-terminal domain PACID_01020 SM00382 ATPases associated with a variety of cellular activities PACID_01030 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_01050 SM01192 PACID_01050 PACID_01050 SM01193 PACID_01050 PACID_01070 SM00062 Bacterial periplasmic substrate-binding proteins PACID_01070 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. PACID_01080 SM00382 ATPases associated with a variety of cellular activities PACID_01220 SM00858 PACID_01220 PACID_01310 SM00257 Lysin motif PACID_01310 SM01043 Bacterial transcriptional activator domain PACID_01360 SM00421 helix_turn_helix, Lux Regulon PACID_01450 SM00382 ATPases associated with a variety of cellular activities PACID_01460 SM00421 helix_turn_helix, Lux Regulon PACID_01460 SM00448 cheY-homologous receiver domain PACID_01470 SM00530 Helix-turn-helix XRE-family like proteins PACID_01520 SM00382 ATPases associated with a variety of cellular activities PACID_01570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PACID_01570 SM00387 Histidine kinase-like ATPases PACID_01570 SM00388 His Kinase A (phosphoacceptor) domain PACID_01610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PACID_01610 SM00387 Histidine kinase-like ATPases PACID_01610 SM00388 His Kinase A (phosphoacceptor) domain PACID_01620 SM00448 cheY-homologous receiver domain PACID_01620 SM00862 Transcriptional regulatory protein, C terminal PACID_01760 SM00344 helix_turn_helix ASNC type PACID_01820 SM00530 Helix-turn-helix XRE-family like proteins PACID_01860 SM00287 Bacterial SH3 domain homologues PACID_01900 SM00450 Rhodanese Homology Domain PACID_01920 SM01217 PACID_01920 PACID_02070 SM00529 Helix-turn-helix diphteria tox regulatory element PACID_02070 SM00899 PACID_02070 PACID_02100 SM00919 Malic enzyme, NAD binding domain PACID_02100 SM01274 PACID_02100 PACID_02150 SM00881 CoA binding domain PACID_02220 SM00382 ATPases associated with a variety of cellular activities PACID_02390 SM00100 Cyclic nucleotide-monophosphate binding domain PACID_02390 SM00419 helix_turn_helix, cAMP Regulatory protein PACID_02530 SM00382 ATPases associated with a variety of cellular activities PACID_02560 SM00382 ATPases associated with a variety of cellular activities PACID_02590 SM00852 Probable molybdopterin binding domain PACID_02700 SM00926 Molybdopterin oxidoreductase Fe4S4 domain PACID_02750 SM00729 Elongator protein 3, MiaB family, Radical SAM PACID_02780 SM00852 Probable molybdopterin binding domain PACID_02800 SM00852 Probable molybdopterin binding domain PACID_02860 SM00560 LamG-like jellyroll fold domain PACID_02860 SM00758 PACID_02860 PACID_02890 SM00382 ATPases associated with a variety of cellular activities PACID_02910 SM00354 helix_turn _helix lactose operon repressor PACID_02970 SM00829 Enoylreductase PACID_03000 SM00354 helix_turn _helix lactose operon repressor PACID_03070 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PACID_03130 SM00354 helix_turn _helix lactose operon repressor PACID_03250 SM00487 DEAD-like helicases superfamily PACID_03250 SM00490 helicase superfamily c-terminal domain PACID_03270 SM00487 DEAD-like helicases superfamily PACID_03270 SM00490 helicase superfamily c-terminal domain PACID_03370 SM00382 ATPases associated with a variety of cellular activities PACID_03540 SM00382 ATPases associated with a variety of cellular activities PACID_03680 SM00346 helix_turn_helix isocitrate lyase regulation PACID_03700 SM00354 helix_turn _helix lactose operon repressor PACID_03720 SM00858 PACID_03720 PACID_03910 SM01038 Beta galactosidase small chain PACID_03990 SM00382 ATPases associated with a variety of cellular activities PACID_04000 SM00382 ATPases associated with a variety of cellular activities PACID_04010 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor PACID_04110 SM00530 Helix-turn-helix XRE-family like proteins PACID_04150 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_04180 SM00354 helix_turn _helix lactose operon repressor PACID_04200 SM00382 ATPases associated with a variety of cellular activities PACID_04220 SM00479 PACID_04220 PACID_04230 SM00382 ATPases associated with a variety of cellular activities PACID_04260 SM00710 Parallel beta-helix repeats PACID_04280 SM00829 Enoylreductase PACID_04310 SM00861 Transketolase, pyrimidine binding domain PACID_04370 SM00116 Domain in cystathionine beta-synthase and other proteins. PACID_04370 SM01091 Transporter associated domain PACID_04410 SM00507 HNH nucleases PACID_04490 SM00226 Low molecular weight phosphatase family PACID_04790 SM00420 helix_turn_helix, Deoxyribose operon repressor PACID_04790 SM01134 PACID_04790 PACID_04820 SM00062 Bacterial periplasmic substrate-binding proteins PACID_04830 SM00382 ATPases associated with a variety of cellular activities PACID_04850 SM00984 UDP binding domain PACID_04950 SM00450 Rhodanese Homology Domain PACID_04980 SM00487 DEAD-like helicases superfamily PACID_04980 SM00490 helicase superfamily c-terminal domain PACID_04980 SM00847 Helicase associated domain (HA2) Add an annotation PACID_05040 SM00829 Enoylreductase PACID_05050 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_05140 SM01208 PACID_05140 PACID_05170 SM00890 Domain of unknown function PACID_05200 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_05200 SM00895 PACID_05200 PACID_05260 SM00382 ATPases associated with a variety of cellular activities PACID_05270 SM00382 ATPases associated with a variety of cellular activities PACID_05310 SM00421 helix_turn_helix, Lux Regulon PACID_05330 SM00903 Flavin reductase like domain PACID_05430 SM00354 helix_turn _helix lactose operon repressor PACID_05440 SM00382 ATPases associated with a variety of cellular activities PACID_05450 SM00382 ATPases associated with a variety of cellular activities PACID_05540 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_05540 SM00895 PACID_05540 PACID_05680 SM00220 Serine/Threonine protein kinases, catalytic domain PACID_05680 SM00740 PACID_05680 PACID_05710 SM00331 Sigma factor PP2C-like phosphatases PACID_05710 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain PACID_05720 SM00240 Forkhead associated domain PACID_05730 SM00240 Forkhead associated domain PACID_05780 SM00894 Excalibur calcium-binding domain PACID_05800 SM00829 Enoylreductase PACID_05850 SM00642 Alpha-amylase domain PACID_05880 SM00642 Alpha-amylase domain PACID_05960 SM00382 ATPases associated with a variety of cellular activities PACID_05990 SM00478 endonuclease III PACID_06010 SM00363 S4 RNA-binding domain PACID_06030 SM00382 ATPases associated with a variety of cellular activities PACID_06050 SM00493 PACID_06050 PACID_06100 SM00382 ATPases associated with a variety of cellular activities PACID_06370 SM01110 PACID_06370 PACID_06400 SM00487 DEAD-like helicases superfamily PACID_06400 SM00490 helicase superfamily c-terminal domain PACID_06470 SM00836 DALR anticodon binding domain PACID_06470 SM01016 Arginyl tRNA synthetase N terminal dom PACID_06560 SM01007 Class II Aldolase and Adducin N-terminal domain PACID_06610 SM00354 helix_turn _helix lactose operon repressor PACID_06670 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_06690 SM00354 helix_turn _helix lactose operon repressor PACID_06730 SM00382 ATPases associated with a variety of cellular activities PACID_06750 SM00829 Enoylreductase PACID_06840 SM00382 ATPases associated with a variety of cellular activities PACID_06870 SM00382 ATPases associated with a variety of cellular activities PACID_07020 SM00240 Forkhead associated domain PACID_07040 SM01133 PACID_07040 PACID_07050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PACID_07050 SM00387 Histidine kinase-like ATPases PACID_07050 SM00388 His Kinase A (phosphoacceptor) domain PACID_07060 SM00448 cheY-homologous receiver domain PACID_07060 SM00862 Transcriptional regulatory protein, C terminal PACID_07110 SM00271 DnaJ molecular chaperone homology domain PACID_07120 SM00422 helix_turn_helix, mercury resistance PACID_07130 SM00829 Enoylreductase PACID_07190 SM00382 ATPases associated with a variety of cellular activities PACID_07230 SM00421 helix_turn_helix, Lux Regulon PACID_07230 SM00448 cheY-homologous receiver domain PACID_07240 SM00387 Histidine kinase-like ATPases PACID_07270 SM00903 Flavin reductase like domain PACID_07290 SM00354 helix_turn _helix lactose operon repressor PACID_07360 SM00382 ATPases associated with a variety of cellular activities PACID_07360 SM01086 C-terminal, D2-small domain, of ClpB protein PACID_07410 SM00420 helix_turn_helix, Deoxyribose operon repressor PACID_07410 SM01134 PACID_07410 PACID_07460 SM00382 ATPases associated with a variety of cellular activities PACID_07530 SM00487 DEAD-like helicases superfamily PACID_07620 SM00382 ATPases associated with a variety of cellular activities PACID_07660 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_07670 SM00382 ATPases associated with a variety of cellular activities PACID_07710 SM00382 ATPases associated with a variety of cellular activities PACID_07870 SM00710 Parallel beta-helix repeats PACID_07910 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins PACID_08040 SM00855 Phosphoglycerate mutase family PACID_08060 SM00387 Histidine kinase-like ATPases PACID_08060 SM00388 His Kinase A (phosphoacceptor) domain PACID_08070 SM00448 cheY-homologous receiver domain PACID_08070 SM00862 Transcriptional regulatory protein, C terminal PACID_08100 SM01058 CarD-like/TRCF domain PACID_08220 SM00858 PACID_08220 PACID_08230 SM00829 Enoylreductase PACID_08400 SM00967 RNA 2'-O ribose methyltransferase substrate binding PACID_08410 SM00840 PACID_08410 PACID_08530 SM00382 ATPases associated with a variety of cellular activities PACID_08680 SM00506 Appr-1"-p processing enzyme PACID_08690 SM00382 ATPases associated with a variety of cellular activities PACID_08720 SM00421 helix_turn_helix, Lux Regulon PACID_08720 SM00448 cheY-homologous receiver domain PACID_08740 SM00855 Phosphoglycerate mutase family PACID_08760 SM00382 ATPases associated with a variety of cellular activities PACID_08780 SM00421 helix_turn_helix, Lux Regulon PACID_08780 SM00448 cheY-homologous receiver domain PACID_08900 SM00382 ATPases associated with a variety of cellular activities PACID_09130 SM00487 DEAD-like helicases superfamily PACID_09130 SM00490 helicase superfamily c-terminal domain PACID_09170 SM00357 Cold shock protein domain PACID_09260 SM00529 Helix-turn-helix diphteria tox regulatory element PACID_09350 SM00354 helix_turn _helix lactose operon repressor PACID_09430 SM00858 PACID_09430 PACID_09440 SM00834 Putative regulatory protein PACID_09570 SM00487 DEAD-like helicases superfamily PACID_09570 SM00490 helicase superfamily c-terminal domain PACID_09600 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor PACID_09650 SM00825 Beta-ketoacyl synthase PACID_09680 SM00422 helix_turn_helix, mercury resistance PACID_09680 SM00567 E-Z type HEAT repeats PACID_09730 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PACID_09740 SM00421 helix_turn_helix, Lux Regulon PACID_09740 SM00448 cheY-homologous receiver domain PACID_09820 SM00796 Allophanate hydrolase subunit 1 PACID_09820 SM00797 Allophanate hydrolase subunit 2 PACID_09830 SM00220 Serine/Threonine protein kinases, catalytic domain PACID_09880 SM00650 Ribosomal RNA adenine dimethylases PACID_09900 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_09940 SM01400 PACID_09940 PACID_09970 SM00487 DEAD-like helicases superfamily PACID_09970 SM00490 helicase superfamily c-terminal domain PACID_09970 SM00982 PACID_09970 PACID_09970 SM01058 CarD-like/TRCF domain PACID_10000 SM01192 PACID_10000 PACID_10000 SM01193 PACID_10000 PACID_10070 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. PACID_10200 SM00967 RNA 2'-O ribose methyltransferase substrate binding PACID_10230 SM00873 B3/4 domain PACID_10230 SM00874 tRNA synthetase B5 domain PACID_10230 SM00896 Ferredoxin-fold anticodon binding domain PACID_10240 SM00729 Elongator protein 3, MiaB family, Radical SAM PACID_10240 SM00876 Biotin and Thiamin Synthesis associated domain PACID_10360 SM00986 Uracil DNA glycosylase superfamily PACID_10360 SM00987 UreE urease accessory protein, C-terminal domain PACID_10450 SM00670 Large family of predicted nucleotide-binding domains PACID_10510 SM00382 ATPases associated with a variety of cellular activities PACID_10570 SM00487 DEAD-like helicases superfamily PACID_10590 SM00857 Resolvase, N terminal domain PACID_10700 SM00530 Helix-turn-helix XRE-family like proteins PACID_10750 SM00382 ATPases associated with a variety of cellular activities PACID_10770 SM00530 Helix-turn-helix XRE-family like proteins PACID_10940 SM00382 ATPases associated with a variety of cellular activities PACID_11030 SM00421 helix_turn_helix, Lux Regulon PACID_11030 SM00448 cheY-homologous receiver domain PACID_11040 SM00829 Enoylreductase PACID_11070 SM00880 PACID_11070 PACID_11160 SM00642 Alpha-amylase domain PACID_11170 SM00984 UDP binding domain PACID_11230 SM00363 S4 RNA-binding domain PACID_11260 SM00382 ATPases associated with a variety of cellular activities PACID_11280 SM00062 Bacterial periplasmic substrate-binding proteins PACID_11290 SM00062 Bacterial periplasmic substrate-binding proteins PACID_11300 SM00062 Bacterial periplasmic substrate-binding proteins PACID_11340 SM00382 ATPases associated with a variety of cellular activities PACID_11390 SM00829 Enoylreductase PACID_11400 SM01120 PACID_11400 PACID_11420 SM00420 helix_turn_helix, Deoxyribose operon repressor PACID_11420 SM01134 PACID_11420 PACID_11490 SM00861 Transketolase, pyrimidine binding domain PACID_11540 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_11560 SM01002 Alanine dehydrogenase/PNT, C-terminal domain PACID_11560 SM01003 Alanine dehydrogenase/PNT, N-terminal domain PACID_11720 SM00756 PACID_11720 PACID_11740 SM01130 PACID_11740 PACID_11780 SM00924 MgtE intracellular N domain PACID_11820 SM01011 Aminopeptidase P, N-terminal domain PACID_11930 SM01230 PACID_11930 PACID_11990 SM00530 Helix-turn-helix XRE-family like proteins PACID_12010 SM01230 PACID_12010 PACID_12060 SM00116 Domain in cystathionine beta-synthase and other proteins. PACID_12070 SM00382 ATPases associated with a variety of cellular activities PACID_12090 SM00729 Elongator protein 3, MiaB family, Radical SAM PACID_12240 SM00116 Domain in cystathionine beta-synthase and other proteins. PACID_12240 SM01240 PACID_12240 PACID_12300 SM00448 cheY-homologous receiver domain PACID_12380 SM00465 GIY-YIG type nucleases (URI domain) PACID_12380 SM00479 PACID_12380 PACID_12420 SM00563 Phosphate acyltransferases PACID_12430 SM00563 Phosphate acyltransferases PACID_12450 SM00421 helix_turn_helix, Lux Regulon PACID_12450 SM00448 cheY-homologous receiver domain PACID_12470 SM00849 Metallo-beta-lactamase superfamily PACID_12490 SM00220 Serine/Threonine protein kinases, catalytic domain PACID_12590 SM00382 ATPases associated with a variety of cellular activities PACID_12620 SM01350 PACID_12620 PACID_12650 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_12650 SM00895 PACID_12650 PACID_12680 SM00382 ATPases associated with a variety of cellular activities PACID_12730 SM00460 Transglutaminase/protease-like homologues PACID_12880 SM00864 Tubulin/FtsZ family, GTPase domain PACID_12880 SM00865 Tubulin/FtsZ family, C-terminal domain PACID_12980 SM00448 cheY-homologous receiver domain PACID_12980 SM01012 PACID_12980 PACID_13010 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs PACID_13010 SM00474 3'-5' exonuclease PACID_13010 SM00475 5'-3' exonuclease PACID_13010 SM00482 DNA polymerase A domain PACID_13040 SM00316 Ribosomal protein S1-like RNA-binding domain PACID_13080 SM00487 DEAD-like helicases superfamily PACID_13080 SM00490 helicase superfamily c-terminal domain PACID_13110 SM00382 ATPases associated with a variety of cellular activities PACID_13140 SM00855 Phosphoglycerate mutase family PACID_13150 SM00278 Helix-hairpin-helix DNA-binding motif class 1 PACID_13150 SM00465 GIY-YIG type nucleases (URI domain) PACID_13190 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PACID_13260 SM00562 PACID_13260 PACID_13270 SM00729 Elongator protein 3, MiaB family, Radical SAM PACID_13300 SM00316 Ribosomal protein S1-like RNA-binding domain PACID_13350 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase PACID_13400 SM00855 Phosphoglycerate mutase family PACID_13480 SM00344 helix_turn_helix ASNC type PACID_13560 SM00382 ATPases associated with a variety of cellular activities PACID_13610 SM00342 helix_turn_helix, arabinose operon control protein PACID_13660 SM00788 Adenylosuccinate synthetase PACID_13780 SM00278 Helix-hairpin-helix DNA-binding motif class 1 PACID_13790 SM00849 Metallo-beta-lactamase superfamily PACID_13800 SM00487 DEAD-like helicases superfamily PACID_13830 SM00642 Alpha-amylase domain PACID_13840 SM00838 Elongation factor G C-terminus PACID_13880 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PACID_13970 SM00382 ATPases associated with a variety of cellular activities PACID_14040 SM00729 Elongator protein 3, MiaB family, Radical SAM PACID_14080 SM00849 Metallo-beta-lactamase superfamily PACID_14100 SM00271 DnaJ molecular chaperone homology domain PACID_14120 SM00829 Enoylreductase PACID_14150 SM00487 DEAD-like helicases superfamily PACID_14150 SM00490 helicase superfamily c-terminal domain PACID_14190 SM00387 Histidine kinase-like ATPases PACID_14200 SM00421 helix_turn_helix, Lux Regulon PACID_14200 SM00448 cheY-homologous receiver domain PACID_14210 SM00382 ATPases associated with a variety of cellular activities PACID_14240 SM00966 SpoVT / AbrB like domain PACID_14270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor PACID_14340 SM00116 Domain in cystathionine beta-synthase and other proteins. PACID_14340 SM01091 Transporter associated domain PACID_14380 SM00917 LeuA allosteric (dimerisation) domain PACID_14390 SM00062 Bacterial periplasmic substrate-binding proteins PACID_14470 SM00829 Enoylreductase PACID_14540 SM00857 Resolvase, N terminal domain PACID_14910 SM00327 von Willebrand factor (vWF) type A domain PACID_14920 SM00327 von Willebrand factor (vWF) type A domain PACID_14950 SM00825 Beta-ketoacyl synthase PACID_14980 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. PACID_15080 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain PACID_15090 SM00851 MGS-like domain PACID_15090 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PACID_15090 SM01209 PACID_15090 PACID_15120 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family PACID_15190 SM00729 Elongator protein 3, MiaB family, Radical SAM PACID_15220 SM00530 Helix-turn-helix XRE-family like proteins PACID_15230 SM00420 helix_turn_helix, Deoxyribose operon repressor PACID_15230 SM01134 PACID_15230 PACID_15250 SM00382 ATPases associated with a variety of cellular activities PACID_15270 SM00322 K homology RNA-binding domain PACID_15270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PACID_15290 SM00729 Elongator protein 3, MiaB family, Radical SAM PACID_15820 SM01040 BRO family, N-terminal domain PACID_15830 SM00530 Helix-turn-helix XRE-family like proteins PACID_15860 SM00530 Helix-turn-helix XRE-family like proteins PACID_15970 SM00487 DEAD-like helicases superfamily PACID_15970 SM00491 PACID_15970 PACID_16060 SM00382 ATPases associated with a variety of cellular activities PACID_16060 SM00487 DEAD-like helicases superfamily PACID_16060 SM00490 helicase superfamily c-terminal domain PACID_16060 SM00847 Helicase associated domain (HA2) Add an annotation PACID_16110 SM00387 Histidine kinase-like ATPases PACID_16110 SM00433 TopoisomeraseII PACID_16140 SM00947 Carbonic anhydrase PACID_16150 SM00434 DNA Topoisomerase IV PACID_16340 SM00861 Transketolase, pyrimidine binding domain PACID_16350 SM00474 3'-5' exonuclease PACID_16510 SM00829 Enoylreductase PACID_16520 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain PACID_16620 SM00240 Forkhead associated domain PACID_16630 SM00422 helix_turn_helix, mercury resistance PACID_16650 SM00422 helix_turn_helix, mercury resistance PACID_16710 SM00046 Diacylglycerol kinase catalytic domain (presumed) PACID_16750 SM00849 Metallo-beta-lactamase superfamily PACID_16750 SM01027 Beta-Casp domain PACID_16780 SM00986 Uracil DNA glycosylase superfamily PACID_16780 SM00987 UreE urease accessory protein, C-terminal domain PACID_16910 SM00530 Helix-turn-helix XRE-family like proteins PACID_16970 SM00344 helix_turn_helix ASNC type PACID_17080 SM00342 helix_turn_helix, arabinose operon control protein PACID_17100 SM00530 Helix-turn-helix XRE-family like proteins PACID_17210 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_17290 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_17380 SM00487 DEAD-like helicases superfamily PACID_17470 SM00382 ATPases associated with a variety of cellular activities PACID_17540 SM01018 B12 binding domain PACID_17640 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain PACID_17640 SM01232 PACID_17640 PACID_17650 SM00382 ATPases associated with a variety of cellular activities PACID_17650 SM00487 DEAD-like helicases superfamily PACID_17650 SM00490 helicase superfamily c-terminal domain PACID_17680 SM01409 PACID_17680 PACID_17690 SM00072 Guanylate kinase homologues. PACID_17720 SM00841 Elongation factor P, C-terminal PACID_17720 SM01185 PACID_17720 PACID_17790 SM00732 Likely ribonuclease with RNase H fold. PACID_17800 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain PACID_17840 SM00382 ATPases associated with a variety of cellular activities PACID_17930 SM00849 Metallo-beta-lactamase superfamily PACID_17960 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PACID_17960 SM00954 Region found in RelA / SpoT proteins PACID_18010 SM01323 PACID_18010 PACID_18020 SM00382 ATPases associated with a variety of cellular activities PACID_18030 SM00278 Helix-hairpin-helix DNA-binding motif class 1 PACID_18120 SM00481 DNA polymerase alpha chain like domain PACID_18190 SM00354 helix_turn _helix lactose operon repressor PACID_18300 SM00507 HNH nucleases PACID_18430 SM00507 HNH nucleases PACID_18500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. PACID_18510 SM00400 zinc finger PACID_18510 SM00493 PACID_18510 PACID_18510 SM00766 DNA primase DnaG DnaB-binding PACID_18550 SM00382 ATPases associated with a variety of cellular activities PACID_18600 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_18660 SM00220 Serine/Threonine protein kinases, catalytic domain PACID_18850 SM00857 Resolvase, N terminal domain PACID_18870 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor PACID_18880 SM00857 Resolvase, N terminal domain PACID_18980 SM00845 GatB domain PACID_19050 SM00382 ATPases associated with a variety of cellular activities PACID_19100 SM00642 Alpha-amylase domain PACID_19160 SM00642 Alpha-amylase domain PACID_19350 SM00382 ATPases associated with a variety of cellular activities PACID_19660 SM00937 PACID_19660 PACID_19680 SM00357 Cold shock protein domain PACID_19680 SM00382 ATPases associated with a variety of cellular activities PACID_19680 SM00959 Rho termination factor, N-terminal domain PACID_19760 SM00861 Transketolase, pyrimidine binding domain PACID_19800 SM00387 Histidine kinase-like ATPases PACID_19800 SM00911 HWE histidine kinase PACID_19970 SM01217 PACID_19970 PACID_20040 SM00341 Helicase and RNase D C-terminal PACID_20070 SM00382 ATPases associated with a variety of cellular activities PACID_20100 SM00357 Cold shock protein domain PACID_20110 SM00331 Sigma factor PP2C-like phosphatases PACID_20110 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain PACID_20140 SM00487 DEAD-like helicases superfamily PACID_20140 SM00490 helicase superfamily c-terminal domain PACID_20170 SM00481 DNA polymerase alpha chain like domain PACID_20210 SM00957 SecA DEAD-like domain PACID_20210 SM00958 SecA preprotein cross-linking domain PACID_20260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PACID_20260 SM00387 Histidine kinase-like ATPases PACID_20260 SM00388 His Kinase A (phosphoacceptor) domain PACID_20270 SM00448 cheY-homologous receiver domain PACID_20270 SM00862 Transcriptional regulatory protein, C terminal PACID_20350 SM00859 Semialdehyde dehydrogenase, NAD binding domain PACID_20380 SM00382 ATPases associated with a variety of cellular activities PACID_20390 SM00937 PACID_20390 PACID_20440 SM00843 PACID_20440 PACID_20490 SM00563 Phosphate acyltransferases PACID_20520 SM00346 helix_turn_helix isocitrate lyase regulation PACID_20570 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain PACID_20580 SM00917 LeuA allosteric (dimerisation) domain PACID_20600 SM01329 PACID_20600 PACID_20610 SM00244 prohibitin homologues PACID_20700 SM00487 DEAD-like helicases superfamily PACID_20700 SM00490 helicase superfamily c-terminal domain PACID_20700 SM01142 PACID_20700 PACID_20710 SM00046 Diacylglycerol kinase catalytic domain (presumed) PACID_20790 SM00363 S4 RNA-binding domain PACID_20870 SM00363 S4 RNA-binding domain PACID_20890 SM00382 ATPases associated with a variety of cellular activities PACID_21090 SM00354 helix_turn _helix lactose operon repressor PACID_21110 SM01007 Class II Aldolase and Adducin N-terminal domain PACID_21140 SM00354 helix_turn _helix lactose operon repressor PACID_21180 SM00354 helix_turn _helix lactose operon repressor PACID_21220 SM00813 Alpha-L-arabinofuranosidase C-terminus PACID_21250 SM00382 ATPases associated with a variety of cellular activities PACID_21390 SM00382 ATPases associated with a variety of cellular activities PACID_21390 SM00962 SRP54-type protein, GTPase domain PACID_21390 SM00963 SRP54-type protein, helical bundle domain PACID_21450 SM00382 ATPases associated with a variety of cellular activities PACID_21450 SM00962 SRP54-type protein, GTPase domain PACID_21450 SM00963 SRP54-type protein, helical bundle domain PACID_21480 SM00530 Helix-turn-helix XRE-family like proteins PACID_21530 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain PACID_21530 SM01232 PACID_21530 PACID_21540 SM00358 Double-stranded RNA binding motif PACID_21540 SM00535 Ribonuclease III family PACID_21610 SM00487 DEAD-like helicases superfamily PACID_21610 SM00490 helicase superfamily c-terminal domain PACID_21630 SM00849 Metallo-beta-lactamase superfamily PACID_21680 SM00316 Ribosomal protein S1-like RNA-binding domain PACID_21680 SM00322 K homology RNA-binding domain PACID_21690 SM01387 PACID_21690 PACID_21700 SM00904 Riboflavin kinase PACID_21920 SM00460 Transglutaminase/protease-like homologues PACID_22010 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PACID_22120 SM00327 von Willebrand factor (vWF) type A domain PACID_22180 SM00530 Helix-turn-helix XRE-family like proteins PACID_22230 SM00244 prohibitin homologues PACID_22250 SM00382 ATPases associated with a variety of cellular activities PACID_22310 SM00822 PACID_22310 PACID_22370 SM00382 ATPases associated with a variety of cellular activities PACID_22480 SM00382 ATPases associated with a variety of cellular activities PACID_22580 SM00354 helix_turn _helix lactose operon repressor PACID_22630 SM00382 ATPases associated with a variety of cellular activities PACID_22740 SM00245 tail specific protease PACID_22760 SM00382 ATPases associated with a variety of cellular activities PACID_22760 SM00994 ClpX C4-type zinc finger PACID_22760 SM01086 C-terminal, D2-small domain, of ClpB protein PACID_23000 SM00650 Ribosomal RNA adenine dimethylases PACID_23050 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain PACID_23050 SM01232 PACID_23050 PACID_23100 SM00292 breast cancer carboxy-terminal domain PACID_23100 SM00532 Ligase N family PACID_23140 SM01350 PACID_23140 PACID_23170 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_23210 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_23230 SM00382 ATPases associated with a variety of cellular activities PACID_23270 SM00479 PACID_23270 PACID_23350 SM00530 Helix-turn-helix XRE-family like proteins PACID_23520 SM00421 helix_turn_helix, Lux Regulon PACID_23520 SM00448 cheY-homologous receiver domain PACID_23530 SM00387 Histidine kinase-like ATPases PACID_23550 SM00382 ATPases associated with a variety of cellular activities PACID_23600 SM00382 ATPases associated with a variety of cellular activities PACID_23610 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_23650 SM00382 ATPases associated with a variety of cellular activities PACID_23680 SM00481 DNA polymerase alpha chain like domain PACID_23760 SM00883 Chaperonin 10 Kd subunit PACID_23930 SM00411 bacterial (prokaryotic) histone like domain PACID_24130 SM01001 AIR carboxylase PACID_24230 SM00822 PACID_24230 PACID_24270 SM00878 Biotin carboxylase C-terminal domain PACID_24490 SM00382 ATPases associated with a variety of cellular activities PACID_24520 SM01091 Transporter associated domain PACID_24620 SM00798 AICARFT/IMPCHase bienzyme PACID_24620 SM00851 MGS-like domain PACID_24700 SM00881 CoA binding domain PACID_24770 SM00382 ATPases associated with a variety of cellular activities PACID_24770 SM00930 PACID_24770 PACID_24790 SM00155 Phospholipase D. Active site motifs. PACID_24810 SM00421 helix_turn_helix, Lux Regulon PACID_24810 SM00448 cheY-homologous receiver domain PACID_24880 SM00830 Chorismate mutase type II PACID_24900 SM01240 PACID_24900 PACID_24910 SM00116 Domain in cystathionine beta-synthase and other proteins. PACID_24910 SM01240 PACID_24910 PACID_24940 SM00883 Chaperonin 10 Kd subunit PACID_25060 SM00487 DEAD-like helicases superfamily PACID_25060 SM00490 helicase superfamily c-terminal domain PACID_25200 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_25260 SM00382 ATPases associated with a variety of cellular activities PACID_25330 SM00662 RNA polymerases D PACID_25350 SM00363 S4 RNA-binding domain PACID_25350 SM01390 PACID_25350 PACID_25390 SM00316 Ribosomal protein S1-like RNA-binding domain PACID_25470 SM00382 ATPases associated with a variety of cellular activities PACID_25580 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. PACID_25590 SM01374 PACID_25590 PACID_25600 SM00382 ATPases associated with a variety of cellular activities PACID_25650 SM00354 helix_turn _helix lactose operon repressor PACID_25700 SM00322 K homology RNA-binding domain PACID_25730 SM01382 PACID_25730 PACID_25730 SM01383 PACID_25730 PACID_25770 SM01403 PACID_25770 PACID_25850 SM00838 Elongation factor G C-terminus PACID_25850 SM00889 Elongation factor G, domain IV PACID_25910 SM00663 RNA polymerase I subunit A N-terminus PACID_25960 SM00649 Ribosomal protein L11/L12 PACID_25970 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. PACID_26210 SM00382 ATPases associated with a variety of cellular activities PACID_26350 SM00926 Molybdopterin oxidoreductase Fe4S4 domain PACID_26350 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PACID_26360 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PACID_26480 SM00382 ATPases associated with a variety of cellular activities PACID_26510 SM00382 ATPases associated with a variety of cellular activities PACID_26560 SM01120 PACID_26560 PACID_26740 SM00507 HNH nucleases PACID_26810 SM00382 ATPases associated with a variety of cellular activities PACID_26960 SM00287 Bacterial SH3 domain homologues PACID_27030 SM00382 ATPases associated with a variety of cellular activities PACID_27040 SM00382 ATPases associated with a variety of cellular activities PACID_27190 SM00244 prohibitin homologues PACID_27230 SM00870 PACID_27230 PACID_27270 SM01211 PACID_27270 PACID_27320 SM00998 Adenylosuccinate lyase C-terminus PACID_27330 SM01209 PACID_27330 PACID_27330 SM01210 PACID_27330 PACID_27370 SM00788 Adenylosuccinate synthetase PACID_27410 SM00450 Rhodanese Homology Domain PACID_27450 SM00838 Elongation factor G C-terminus PACID_27460 SM00287 Bacterial SH3 domain homologues PACID_27550 SM01022 PACID_27550 PACID_27570 SM00862 Transcriptional regulatory protein, C terminal PACID_27590 SM00855 Phosphoglycerate mutase family PACID_27630 SM00382 ATPases associated with a variety of cellular activities PACID_27720 SM00833 Cobalamin synthesis protein cobW C-terminal domain PACID_27760 SM00382 ATPases associated with a variety of cellular activities PACID_27820 SM00382 ATPases associated with a variety of cellular activities PACID_27910 SM00822 PACID_27910 PACID_27920 SM00909 Sporulation and spore germination PACID_27980 SM00855 Phosphoglycerate mutase family PACID_28010 SM00881 CoA binding domain PACID_28040 SM00859 Semialdehyde dehydrogenase, NAD binding domain PACID_28100 SM00382 ATPases associated with a variety of cellular activities PACID_28200 SM01004 Delta-aminolevulinic acid dehydratase PACID_28220 SM00478 endonuclease III PACID_28220 SM00525 PACID_28220 PACID_28240 SM00382 ATPases associated with a variety of cellular activities PACID_28310 SM00507 HNH nucleases PACID_28400 SM00382 ATPases associated with a variety of cellular activities PACID_28400 SM01086 C-terminal, D2-small domain, of ClpB protein PACID_28460 SM00905 Dihydroneopterin aldolase PACID_28490 SM00382 ATPases associated with a variety of cellular activities PACID_28560 SM00855 Phosphoglycerate mutase family PACID_28600 SM00938 Nitrogen regulatory protein P-II PACID_28650 SM00344 helix_turn_helix ASNC type PACID_28670 SM00382 ATPases associated with a variety of cellular activities PACID_28880 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain PACID_28880 SM00437 Bacterial DNA topoisomerase I DNA-binding domain PACID_28880 SM00493 PACID_28880 PACID_28920 SM00487 DEAD-like helicases superfamily PACID_28920 SM00490 helicase superfamily c-terminal domain PACID_29120 SM00478 endonuclease III PACID_29120 SM00525 PACID_29120 PACID_29130 SM00100 Cyclic nucleotide-monophosphate binding domain PACID_29130 SM00419 helix_turn_helix, cAMP Regulatory protein PACID_29170 SM00740 PACID_29170 PACID_29240 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_29330 SM00382 ATPases associated with a variety of cellular activities PACID_29340 SM00382 ATPases associated with a variety of cellular activities PACID_29420 SM00487 DEAD-like helicases superfamily PACID_29420 SM00490 helicase superfamily c-terminal domain PACID_29450 SM00479 PACID_29450 PACID_29560 SM00421 helix_turn_helix, Lux Regulon PACID_29570 SM01060 PACID_29570 PACID_29820 SM00387 Histidine kinase-like ATPases PACID_29820 SM00388 His Kinase A (phosphoacceptor) domain PACID_29830 SM00448 cheY-homologous receiver domain PACID_29830 SM00862 Transcriptional regulatory protein, C terminal PACID_29860 SM00487 DEAD-like helicases superfamily PACID_29860 SM00490 helicase superfamily c-terminal domain PACID_29900 SM01101 PACID_29900 PACID_30010 SM00346 helix_turn_helix isocitrate lyase regulation PACID_30050 SM00387 Histidine kinase-like ATPases PACID_30050 SM00388 His Kinase A (phosphoacceptor) domain PACID_30060 SM00448 cheY-homologous receiver domain PACID_30060 SM00862 Transcriptional regulatory protein, C terminal PACID_30080 SM00014 Acid phosphatase homologues PACID_30110 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_30150 SM00822 PACID_30150 PACID_30240 SM00354 helix_turn _helix lactose operon repressor PACID_30260 SM00829 Enoylreductase PACID_30280 SM01133 PACID_30280 PACID_30490 SM00382 ATPases associated with a variety of cellular activities PACID_30540 SM00507 HNH nucleases PACID_30590 SM00829 Enoylreductase PACID_30710 SM00642 Alpha-amylase domain PACID_30730 SM00829 Enoylreductase PACID_30810 SM00354 helix_turn _helix lactose operon repressor PACID_30890 SM00829 Enoylreductase PACID_30950 SM00354 helix_turn _helix lactose operon repressor PACID_31080 SM01005 Alanine racemase, C-terminal domain PACID_31110 SM00861 Transketolase, pyrimidine binding domain PACID_31150 SM00872 Alpha mannosidase, middle domain PACID_31170 SM00812 Alpha-L-fucosidase PACID_31240 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_31240 SM00895 PACID_31240 PACID_31350 SM00382 ATPases associated with a variety of cellular activities PACID_31380 SM00062 Bacterial periplasmic substrate-binding proteins PACID_31400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor PACID_31480 SM00507 HNH nucleases PACID_31510 SM00900 PACID_31510 PACID_31530 SM00387 Histidine kinase-like ATPases PACID_31530 SM00388 His Kinase A (phosphoacceptor) domain PACID_31540 SM00448 cheY-homologous receiver domain PACID_31540 SM00862 Transcriptional regulatory protein, C terminal PACID_31560 SM00640 Glycosyl hydrolases family 32 PACID_31610 SM01007 Class II Aldolase and Adducin N-terminal domain PACID_31630 SM01133 PACID_31630 PACID_31640 SM00829 Enoylreductase PACID_31680 SM00644 PACID_31680 PACID_31780 SM00495 Chitin-binding domain type 3 PACID_31790 SM00354 helix_turn _helix lactose operon repressor PACID_31800 SM00642 Alpha-amylase domain PACID_31830 SM00641 Glycosyl hydrolases family 25 PACID_31860 SM01217 PACID_31860 PACID_31870 SM00642 Alpha-amylase domain PACID_32020 SM00642 Alpha-amylase domain PACID_32050 SM00382 ATPases associated with a variety of cellular activities PACID_32060 SM00382 ATPases associated with a variety of cellular activities PACID_32070 SM00226 Low molecular weight phosphatase family PACID_32160 SM00354 helix_turn _helix lactose operon repressor PACID_32180 SM00448 cheY-homologous receiver domain PACID_32180 SM00862 Transcriptional regulatory protein, C terminal PACID_32190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain PACID_32190 SM00387 Histidine kinase-like ATPases PACID_32190 SM00388 His Kinase A (phosphoacceptor) domain PACID_32270 SM00831 Cation transporter/ATPase, N-terminus PACID_32300 SM00650 Ribosomal RNA adenine dimethylases PACID_32390 SM00450 Rhodanese Homology Domain PACID_32420 SM00518 AP endonuclease family 2 PACID_32440 SM00563 Phosphate acyltransferases PACID_32450 SM00871 Bacterial transcription activator, effector binding domain PACID_32560 SM00421 helix_turn_helix, Lux Regulon PACID_32560 SM00448 cheY-homologous receiver domain PACID_32580 SM00382 ATPases associated with a variety of cellular activities PACID_32670 SM00382 ATPases associated with a variety of cellular activities PACID_32720 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_32760 SM00347 helix_turn_helix multiple antibiotic resistance protein PACID_32770 SM00867 YceI-like domain PACID_32930 SM00354 helix_turn _helix lactose operon repressor PACID_33010 SM00640 Glycosyl hydrolases family 32 PACID_33050 SM00966 SpoVT / AbrB like domain PACID_33100 SM00240 Forkhead associated domain PACID_33100 SM00382 ATPases associated with a variety of cellular activities PACID_33110 SM00220 Serine/Threonine protein kinases, catalytic domain PACID_33150 SM01002 Alanine dehydrogenase/PNT, C-terminal domain PACID_33150 SM01003 Alanine dehydrogenase/PNT, N-terminal domain PACID_33260 SM00287 Bacterial SH3 domain homologues PACID_33300 SM00507 HNH nucleases PACID_33500 SM00382 ATPases associated with a variety of cellular activities PACID_33550 SM00420 helix_turn_helix, Deoxyribose operon repressor PACID_33550 SM01134 PACID_33550 PACID_33650 SM00829 Enoylreductase PACID_33760 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. PACID_33830 SM00813 Alpha-L-arabinofuranosidase C-terminus PACID_33840 SM00354 helix_turn _helix lactose operon repressor PACID_33950 SM00421 helix_turn_helix, Lux Regulon PACID_33950 SM00448 cheY-homologous receiver domain PACID_33970 SM00829 Enoylreductase PACID_34000 SM00354 helix_turn _helix lactose operon repressor PACID_34100 SM00354 helix_turn _helix lactose operon repressor PACID_34120 SM00354 helix_turn _helix lactose operon repressor PACID_34170 SM00345 helix_turn_helix gluconate operon transcriptional repressor PACID_34170 SM00866 PACID_34170 PACID_34250 SM00470 ParB-like nuclease domain PACID_34300 SM00393 Putative single-stranded nucleic acids-binding domain PACID_34320 SM01234 PACID_34320