locus-tag class description JS278_00001 PF08299 Bacterial dnaA protein helix-turn-helix JS278_00001 PF00308 Bacterial dnaA protein JS278_00003 PF12704 MacB-like periplasmic core domain JS278_00003 PF02687 FtsX-like permease family JS278_00004 PF00712 DNA polymerase III beta subunit, N-terminal domain JS278_00004 PF02768 DNA polymerase III beta subunit, C-terminal domain JS278_00004 PF02767 DNA polymerase III beta subunit, central domain JS278_00006 PF02463 RecF/RecN/SMC N terminal domain JS278_00007 PF05258 Dna[CI] antecedent, DciA JS278_00009 PF01751 Toprim domain JS278_00009 PF00986 DNA gyrase B subunit, carboxyl terminus JS278_00009 PF00204 DNA gyrase B JS278_00009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_00010 PF00521 DNA gyrase/topoisomerase IV, subunit A JS278_00010 PF03989 DNA gyrase C-terminal domain, beta-propeller JS278_00011 PF12089 Transmembrane domain of unknown function (DUF3566) JS278_00012 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_00012 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_00014 PF00356 Bacterial regulatory proteins, lacI family JS278_00015 PF00005 ABC transporter JS278_00016 PF02653 Branched-chain amino acid transport system / permease component JS278_00017 PF13407 Periplasmic binding protein domain JS278_00018 PF00294 pfkB family carbohydrate kinase JS278_00019 PF05025 RbsD / FucU transport protein family JS278_00020 PF01061 ABC-2 type transporter JS278_00021 PF00005 ABC transporter JS278_00021 PF13732 Domain of unknown function (DUF4162) JS278_00027 PF13744 Helix-turn-helix domain JS278_00028 PF01850 PIN domain JS278_00029 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JS278_00031 PF03600 Citrate transporter JS278_00033 PF13350 Tyrosine phosphatase family JS278_00034 PF02837 Glycosyl hydrolases family 2, sugar binding domain JS278_00034 PF02929 Beta galactosidase small chain JS278_00034 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JS278_00034 PF16353 Domain of unknown function(DUF4981) JS278_00036 PF03949 Malic enzyme, NAD binding domain JS278_00036 PF00390 Malic enzyme, N-terminal domain JS278_00037 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JS278_00037 PF00056 lactate/malate dehydrogenase, NAD binding domain JS278_00038 PF00364 Biotin-requiring enzyme JS278_00038 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JS278_00038 PF00682 HMGL-like JS278_00038 PF02436 Conserved carboxylase domain JS278_00038 PF02785 Biotin carboxylase C-terminal domain JS278_00038 PF00289 Biotin carboxylase, N-terminal domain JS278_00040 PF00583 Acetyltransferase (GNAT) family JS278_00045 PF00005 ABC transporter JS278_00046 PF01032 FecCD transport family JS278_00047 PF00471 Ribosomal protein L33 JS278_00048 PF00196 Bacterial regulatory proteins, luxR family JS278_00048 PF00072 Response regulator receiver domain JS278_00054 PF00596 Class II Aldolase and Adducin N-terminal domain JS278_00056 PF00107 Zinc-binding dehydrogenase JS278_00056 PF08240 Alcohol dehydrogenase GroES-like domain JS278_00057 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JS278_00058 PF03611 PTS system sugar-specific permease component JS278_00060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JS278_00060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JS278_00061 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JS278_00061 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JS278_00064 PF00005 ABC transporter JS278_00066 PF10437 Bacterial lipoate protein ligase C-terminus JS278_00066 PF03099 Biotin/lipoate A/B protein ligase family JS278_00067 PF00690 Cation transporter/ATPase, N-terminus JS278_00067 PF00689 Cation transporting ATPase, C-terminus JS278_00068 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00069 PF00005 ABC transporter JS278_00070 PF00155 Aminotransferase class I and II JS278_00073 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00074 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00082 PF00437 Type II/IV secretion system protein JS278_00089 PF00171 Aldehyde dehydrogenase family JS278_00095 PF02558 Ketopantoate reductase PanE/ApbA JS278_00095 PF08546 Ketopantoate reductase PanE/ApbA C terminal JS278_00097 PF01268 Formate--tetrahydrofolate ligase JS278_00102 PF02687 FtsX-like permease family JS278_00102 PF18075 FtsX extracellular domain JS278_00103 PF12704 MacB-like periplasmic core domain JS278_00103 PF02687 FtsX-like permease family JS278_00103 PF00005 ABC transporter JS278_00104 PF00196 Bacterial regulatory proteins, luxR family JS278_00104 PF00072 Response regulator receiver domain JS278_00105 PF01139 tRNA-splicing ligase RtcB JS278_00109 PF07690 Major Facilitator Superfamily JS278_00110 PF13936 Helix-turn-helix domain JS278_00110 PF00665 Integrase core domain JS278_00113 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase JS278_00115 PF00672 HAMP domain JS278_00115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_00115 PF00512 His Kinase A (phospho-acceptor) domain JS278_00116 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase JS278_00117 PF07730 Histidine kinase JS278_00118 PF01370 NAD dependent epimerase/dehydratase family JS278_00122 PF01507 Phosphoadenosine phosphosulfate reductase family JS278_00123 PF01507 Phosphoadenosine phosphosulfate reductase family JS278_00124 PF00009 Elongation factor Tu GTP binding domain JS278_00125 PF01925 Sulfite exporter TauE/SafE JS278_00130 PF07687 Peptidase dimerisation domain JS278_00130 PF01546 Peptidase family M20/M25/M40 JS278_00132 PF00248 Aldo/keto reductase family JS278_00133 PF03330 Lytic transglycolase JS278_00134 PF00561 alpha/beta hydrolase fold JS278_00134 PF00364 Biotin-requiring enzyme JS278_00136 PF05690 Thiazole biosynthesis protein ThiG JS278_00137 PF00581 Rhodanese-like domain JS278_00137 PF00899 ThiF family JS278_00139 PF01712 Deoxynucleoside kinase JS278_00140 PF00440 Bacterial regulatory proteins, tetR family JS278_00141 PF03176 MMPL family JS278_00143 PF13460 NAD(P)H-binding JS278_00144 PF01638 HxlR-like helix-turn-helix JS278_00145 PF00085 Thioredoxin JS278_00145 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_00147 PF13180 PDZ domain JS278_00150 PF00230 Major intrinsic protein JS278_00151 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JS278_00151 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JS278_00154 PF08281 Sigma-70, region 4 JS278_00154 PF04542 Sigma-70 region 2 JS278_00155 PF03793 PASTA domain JS278_00155 PF00069 Protein kinase domain JS278_00158 PF08240 Alcohol dehydrogenase GroES-like domain JS278_00158 PF00107 Zinc-binding dehydrogenase JS278_00159 PF01758 Sodium Bile acid symporter family JS278_00160 PF00171 Aldehyde dehydrogenase family JS278_00161 PF12627 Probable RNA and SrmB- binding site of polymerase A JS278_00161 PF01743 Poly A polymerase head domain JS278_00161 PF13735 tRNA nucleotidyltransferase domain 2 putative JS278_00162 PF02595 Glycerate kinase family JS278_00164 PF00924 Mechanosensitive ion channel JS278_00166 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JS278_00166 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JS278_00167 PF03051 Peptidase C1-like family JS278_00169 PF05076 Suppressor of fused protein (SUFU) JS278_00170 PF01964 Radical SAM ThiC family JS278_00170 PF13667 ThiC-associated domain JS278_00172 PF00206 Lyase JS278_00172 PF10415 Fumarase C C-terminus JS278_00175 PF00654 Voltage gated chloride channel JS278_00181 PF00728 Glycosyl hydrolase family 20, catalytic domain JS278_00181 PF02838 Glycosyl hydrolase family 20, domain 2 JS278_00181 PF07691 PA14 domain JS278_00185 PF00072 Response regulator receiver domain JS278_00185 PF00486 Transcriptional regulatory protein, C terminal JS278_00186 PF00005 ABC transporter JS278_00188 PF00512 His Kinase A (phospho-acceptor) domain JS278_00188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_00189 PF00962 Adenosine/AMP deaminase JS278_00190 PF00285 Citrate synthase, C-terminal domain JS278_00191 PF03330 Lytic transglycolase JS278_00192 PF17964 Bacterial Ig domain JS278_00192 PF03734 L,D-transpeptidase catalytic domain JS278_00200 PF12146 Serine aminopeptidase, S33 JS278_00201 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JS278_00201 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JS278_00203 PF00171 Aldehyde dehydrogenase family JS278_00206 PF00069 Protein kinase domain JS278_00207 PF00005 ABC transporter JS278_00207 PF01061 ABC-2 type transporter JS278_00207 PF00498 FHA domain JS278_00208 PF00795 Carbon-nitrogen hydrolase JS278_00208 PF02540 NAD synthase JS278_00209 PF01850 PIN domain JS278_00210 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JS278_00211 PF01402 Ribbon-helix-helix protein, copG family JS278_00212 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JS278_00213 PF00294 pfkB family carbohydrate kinase JS278_00214 PF00251 Glycosyl hydrolases family 32 N-terminal domain JS278_00214 PF08244 Glycosyl hydrolases family 32 C terminal JS278_00216 PF00005 ABC transporter JS278_00216 PF13732 Domain of unknown function (DUF4162) JS278_00218 PF00698 Acyl transferase domain JS278_00221 PF07977 FabA-like domain JS278_00225 PF00109 Beta-ketoacyl synthase, N-terminal domain JS278_00225 PF02801 Beta-ketoacyl synthase, C-terminal domain JS278_00226 PF02585 GlcNAc-PI de-N-acetylase JS278_00230 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00231 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00233 PF04073 Aminoacyl-tRNA editing domain JS278_00234 PF00294 pfkB family carbohydrate kinase JS278_00251 PF13175 AAA ATPase domain JS278_00253 PF04264 YceI-like domain JS278_00255 PF00324 Amino acid permease JS278_00257 PF01047 MarR family JS278_00258 PF01451 Low molecular weight phosphotyrosine protein phosphatase JS278_00259 PF02374 Anion-transporting ATPase JS278_00260 PF06953 Arsenical resistance operon trans-acting repressor ArsD JS278_00262 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JS278_00262 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JS278_00265 PF04324 BFD-like [2Fe-2S] binding domain JS278_00265 PF01266 FAD dependent oxidoreductase JS278_00266 PF00890 FAD binding domain JS278_00267 PF02754 Cysteine-rich domain JS278_00267 PF13183 4Fe-4S dicluster domain JS278_00273 PF01850 PIN domain JS278_00275 PF00005 ABC transporter JS278_00277 PF00072 Response regulator receiver domain JS278_00277 PF00196 Bacterial regulatory proteins, luxR family JS278_00278 PF07730 Histidine kinase JS278_00278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_00282 PF01565 FAD binding domain JS278_00282 PF02913 FAD linked oxidases, C-terminal domain JS278_00283 PF00155 Aminotransferase class I and II JS278_00284 PF14759 Reductase C-terminal JS278_00284 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_00291 PF00106 short chain dehydrogenase JS278_00292 PF01261 Xylose isomerase-like TIM barrel JS278_00293 PF00501 AMP-binding enzyme JS278_00298 PF00005 ABC transporter JS278_00299 PF03239 Iron permease FTR1 family JS278_00300 PF13473 Cupredoxin-like domain JS278_00300 PF09375 Imelysin JS278_00301 PF10518 TAT (twin-arginine translocation) pathway signal sequence JS278_00301 PF04261 Dyp-type peroxidase family JS278_00302 PF01250 Ribosomal protein S6 JS278_00303 PF00436 Single-strand binding protein family JS278_00304 PF01084 Ribosomal protein S18 JS278_00305 PF01281 Ribosomal protein L9, N-terminal domain JS278_00305 PF03948 Ribosomal protein L9, C-terminal domain JS278_00307 PF02673 Bacitracin resistance protein BacA JS278_00309 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JS278_00312 PF16916 Dimerisation domain of Zinc Transporter JS278_00312 PF01545 Cation efflux family JS278_00313 PF02674 Colicin V production protein JS278_00314 PF00293 NUDIX domain JS278_00316 PF00512 His Kinase A (phospho-acceptor) domain JS278_00316 PF00672 HAMP domain JS278_00316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_00317 PF00072 Response regulator receiver domain JS278_00317 PF00486 Transcriptional regulatory protein, C terminal JS278_00319 PF01451 Low molecular weight phosphotyrosine protein phosphatase JS278_00320 PF00005 ABC transporter JS278_00320 PF00664 ABC transporter transmembrane region JS278_00321 PF00664 ABC transporter transmembrane region JS278_00321 PF00005 ABC transporter JS278_00322 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JS278_00323 PF02872 5'-nucleotidase, C-terminal domain JS278_00323 PF00149 Calcineurin-like phosphoesterase JS278_00324 PF00128 Alpha amylase, catalytic domain JS278_00325 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00329 PF00135 Carboxylesterase family JS278_00333 PF02308 MgtC family JS278_00335 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00336 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00337 PF13416 Bacterial extracellular solute-binding protein JS278_00339 PF01915 Glycosyl hydrolase family 3 C-terminal domain JS278_00339 PF14310 Fibronectin type III-like domain JS278_00339 PF00933 Glycosyl hydrolase family 3 N terminal domain JS278_00341 PF01183 Glycosyl hydrolases family 25 JS278_00344 PF00356 Bacterial regulatory proteins, lacI family JS278_00345 PF01547 Bacterial extracellular solute-binding protein JS278_00346 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00347 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00349 PF00356 Bacterial regulatory proteins, lacI family JS278_00351 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00352 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00353 PF08244 Glycosyl hydrolases family 32 C terminal JS278_00353 PF00251 Glycosyl hydrolases family 32 N-terminal domain JS278_00354 PF03992 Antibiotic biosynthesis monooxygenase JS278_00357 PF13087 AAA domain JS278_00357 PF13195 Protein of unknown function (DUF4011) JS278_00357 PF13195 Protein of unknown function (DUF4011) JS278_00357 PF13087 AAA domain JS278_00357 PF13086 AAA domain JS278_00357 PF13086 AAA domain JS278_00359 PF00356 Bacterial regulatory proteins, lacI family JS278_00362 PF01547 Bacterial extracellular solute-binding protein JS278_00363 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00364 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00365 PF13520 Amino acid permease JS278_00367 PF00324 Amino acid permease JS278_00368 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JS278_00368 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JS278_00370 PF08244 Glycosyl hydrolases family 32 C terminal JS278_00370 PF00251 Glycosyl hydrolases family 32 N-terminal domain JS278_00372 PF01022 Bacterial regulatory protein, arsR family JS278_00378 PF04945 YHS domain JS278_00381 PF03633 Glycosyl hydrolase family 65, C-terminal domain JS278_00381 PF03632 Glycosyl hydrolase family 65 central catalytic domain JS278_00381 PF03636 Glycosyl hydrolase family 65, N-terminal domain JS278_00384 PF13173 AAA domain JS278_00384 PF13635 Domain of unknown function (DUF4143) JS278_00385 PF04055 Radical SAM superfamily JS278_00385 PF13186 Iron-sulfur cluster-binding domain JS278_00386 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_00386 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JS278_00387 PF00676 Dehydrogenase E1 component JS278_00388 PF02779 Transketolase, pyrimidine binding domain JS278_00388 PF02780 Transketolase, C-terminal domain JS278_00389 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JS278_00389 PF02817 e3 binding domain JS278_00389 PF00364 Biotin-requiring enzyme JS278_00391 PF01168 Alanine racemase, N-terminal domain JS278_00391 PF00842 Alanine racemase, C-terminal domain JS278_00393 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JS278_00395 PF00800 Prephenate dehydratase JS278_00395 PF01842 ACT domain JS278_00396 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JS278_00396 PF02403 Seryl-tRNA synthetase N-terminal domain JS278_00399 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00400 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00402 PF00356 Bacterial regulatory proteins, lacI family JS278_00407 PF00764 Arginosuccinate synthase JS278_00408 PF16197 Ketoacyl-synthetase C-terminal extension JS278_00408 PF00107 Zinc-binding dehydrogenase JS278_00408 PF00550 Phosphopantetheine attachment site JS278_00408 PF14765 Polyketide synthase dehydratase JS278_00408 PF08240 Alcohol dehydrogenase GroES-like domain JS278_00408 PF00698 Acyl transferase domain JS278_00408 PF00109 Beta-ketoacyl synthase, N-terminal domain JS278_00408 PF08659 KR domain JS278_00408 PF02801 Beta-ketoacyl synthase, C-terminal domain JS278_00413 PF00288 GHMP kinases N terminal domain JS278_00413 PF08544 GHMP kinases C terminal JS278_00413 PF10509 Galactokinase galactose-binding signature JS278_00414 PF00356 Bacterial regulatory proteins, lacI family JS278_00420 PF03009 Glycerophosphoryl diester phosphodiesterase family JS278_00421 PF00326 Prolyl oligopeptidase family JS278_00421 PF07676 WD40-like Beta Propeller Repeat JS278_00422 PF16884 N-terminal domain of oxidoreductase JS278_00422 PF00107 Zinc-binding dehydrogenase JS278_00423 PF00128 Alpha amylase, catalytic domain JS278_00423 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JS278_00428 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JS278_00436 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00438 PF00005 ABC transporter JS278_00438 PF00571 CBS domain JS278_00439 PF02080 TrkA-C domain JS278_00439 PF00999 Sodium/hydrogen exchanger family JS278_00439 PF03471 Transporter associated domain JS278_00443 PF00155 Aminotransferase class I and II JS278_00447 PF03330 Lytic transglycolase JS278_00450 PF00392 Bacterial regulatory proteins, gntR family JS278_00450 PF07702 UTRA domain JS278_00453 PF03611 PTS system sugar-specific permease component JS278_00454 PF14552 Tautomerase enzyme JS278_00455 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_00455 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_00456 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_00456 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_00461 PF01380 SIS domain JS278_00462 PF03830 PTS system sorbose subfamily IIB component JS278_00463 PF03613 PTS system mannose/fructose/sorbose family IID component JS278_00464 PF03609 PTS system sorbose-specific iic component JS278_00465 PF00392 Bacterial regulatory proteins, gntR family JS278_00465 PF07702 UTRA domain JS278_00468 PF02733 Dak1 domain JS278_00468 PF02734 DAK2 domain JS278_00470 PF00356 Bacterial regulatory proteins, lacI family JS278_00471 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00472 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00476 PF03575 Peptidase family S51 JS278_00477 PF01614 Bacterial transcriptional regulator JS278_00477 PF09339 IclR helix-turn-helix domain JS278_00479 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JS278_00480 PF07687 Peptidase dimerisation domain JS278_00480 PF01546 Peptidase family M20/M25/M40 JS278_00481 PF04198 Putative sugar-binding domain JS278_00482 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JS278_00482 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JS278_00483 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JS278_00483 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JS278_00484 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JS278_00484 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JS278_00484 PF01842 ACT domain JS278_00485 PF00596 Class II Aldolase and Adducin N-terminal domain JS278_00486 PF00248 Aldo/keto reductase family JS278_00487 PF01791 DeoC/LacD family aldolase JS278_00488 PF00107 Zinc-binding dehydrogenase JS278_00488 PF08240 Alcohol dehydrogenase GroES-like domain JS278_00490 PF13932 GidA associated domain JS278_00490 PF01134 Glucose inhibited division protein A JS278_00491 PF00083 Sugar (and other) transporter JS278_00492 PF08220 DeoR-like helix-turn-helix domain JS278_00492 PF00455 DeoR C terminal sensor domain JS278_00493 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JS278_00493 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JS278_00495 PF13802 Galactose mutarotase-like JS278_00495 PF01055 Glycosyl hydrolases family 31 JS278_00498 PF01791 DeoC/LacD family aldolase JS278_00499 PF00294 pfkB family carbohydrate kinase JS278_00502 PF09827 CRISPR associated protein Cas2 JS278_00503 PF01867 CRISPR associated protein Cas1 JS278_00503 PF01930 Domain of unknown function DUF83 JS278_00511 PF06150 ChaB JS278_00515 PF01475 Ferric uptake regulator family JS278_00516 PF00141 Peroxidase JS278_00517 PF00210 Ferritin-like domain JS278_00518 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_00518 PF14759 Reductase C-terminal JS278_00524 PF00072 Response regulator receiver domain JS278_00524 PF00196 Bacterial regulatory proteins, luxR family JS278_00527 PF06965 Na+/H+ antiporter 1 JS278_00527 PF13462 Thioredoxin JS278_00528 PF08240 Alcohol dehydrogenase GroES-like domain JS278_00528 PF13823 Alcohol dehydrogenase GroES-associated JS278_00528 PF00107 Zinc-binding dehydrogenase JS278_00530 PF00067 Cytochrome P450 JS278_00531 PF00107 Zinc-binding dehydrogenase JS278_00531 PF13823 Alcohol dehydrogenase GroES-associated JS278_00531 PF08240 Alcohol dehydrogenase GroES-like domain JS278_00534 PF03631 Virulence factor BrkB JS278_00536 PF04226 Transglycosylase associated protein JS278_00539 PF00561 alpha/beta hydrolase fold JS278_00541 PF01554 MatE JS278_00545 PF11855 Protein of unknown function (DUF3375) JS278_00546 PF12728 Helix-turn-helix domain JS278_00546 PF02661 Fic/DOC family JS278_00548 PF00665 Integrase core domain JS278_00548 PF13936 Helix-turn-helix domain JS278_00550 PF02146 Sir2 family JS278_00552 PF04539 Sigma-70 region 3 JS278_00552 PF04545 Sigma-70, region 4 JS278_00552 PF00140 Sigma-70 factor, region 1.2 JS278_00552 PF04542 Sigma-70 region 2 JS278_00554 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JS278_00554 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JS278_00555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JS278_00556 PF01197 Ribosomal protein L31 JS278_00557 PF03883 Peroxide stress protein YaaA JS278_00559 PF00005 ABC transporter JS278_00559 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JS278_00560 PF00005 ABC transporter JS278_00560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JS278_00561 PF12911 N-terminal TM domain of oligopeptide transport permease C JS278_00561 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00562 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00568 PF01047 MarR family JS278_00569 PF02574 Homocysteine S-methyltransferase JS278_00570 PF00324 Amino acid permease JS278_00577 PF10518 TAT (twin-arginine translocation) pathway signal sequence JS278_00577 PF00149 Calcineurin-like phosphoesterase JS278_00578 PF17092 Penicillin-binding protein OB-like domain JS278_00578 PF00905 Penicillin binding protein transpeptidase domain JS278_00578 PF00912 Transglycosylase JS278_00579 PF00912 Transglycosylase JS278_00579 PF00905 Penicillin binding protein transpeptidase domain JS278_00580 PF02467 Transcription factor WhiB JS278_00583 PF00027 Cyclic nucleotide-binding domain JS278_00583 PF13545 Crp-like helix-turn-helix domain JS278_00584 PF10576 Iron-sulfur binding domain of endonuclease III JS278_00584 PF00633 Helix-hairpin-helix motif JS278_00584 PF00730 HhH-GPD superfamily base excision DNA repair protein JS278_00586 PF00293 NUDIX domain JS278_00590 PF00437 Type II/IV secretion system protein JS278_00610 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JS278_00611 PF00270 DEAD/DEAH box helicase JS278_00611 PF09369 Domain of unknown function (DUF1998) JS278_00611 PF00271 Helicase conserved C-terminal domain JS278_00612 PF17827 PrmC N-terminal domain JS278_00612 PF05175 Methyltransferase small domain JS278_00614 PF13368 Topoisomerase C-terminal repeat JS278_00614 PF01131 DNA topoisomerase JS278_00614 PF01751 Toprim domain JS278_00616 PF02223 Thymidylate kinase JS278_00617 PF12169 DNA polymerase III subunits gamma and tau domain III JS278_00619 PF04468 PSP1 C-terminal conserved region JS278_00620 PF00561 alpha/beta hydrolase fold JS278_00624 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JS278_00625 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JS278_00629 PF01593 Flavin containing amine oxidoreductase JS278_00630 PF03358 NADPH-dependent FMN reductase JS278_00631 PF00958 GMP synthase C terminal domain JS278_00631 PF00117 Glutamine amidotransferase class-I JS278_00634 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JS278_00635 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00636 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00636 PF12911 N-terminal TM domain of oligopeptide transport permease C JS278_00637 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JS278_00637 PF00005 ABC transporter JS278_00638 PF02016 LD-carboxypeptidase N-terminal domain JS278_00638 PF17676 LD-carboxypeptidase C-terminal domain JS278_00639 PF01037 Lrp/AsnC ligand binding domain JS278_00639 PF13404 AsnC-type helix-turn-helix domain JS278_00645 PF00543 Nitrogen regulatory protein P-II JS278_00646 PF00909 Ammonium Transporter Family JS278_00650 PF05448 Acetyl xylan esterase (AXE1) JS278_00652 PF00719 Inorganic pyrophosphatase JS278_00653 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JS278_00654 PF01171 PP-loop family JS278_00657 PF01227 GTP cyclohydrolase I JS278_00660 PF00809 Pterin binding enzyme JS278_00661 PF02152 Dihydroneopterin aldolase JS278_00662 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JS278_00665 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JS278_00667 PF02861 Clp amino terminal domain, pathogenicity island component JS278_00667 PF10431 C-terminal, D2-small domain, of ClpB protein JS278_00667 PF07724 AAA domain (Cdc48 subfamily) JS278_00667 PF00004 ATPase family associated with various cellular activities (AAA) JS278_00667 PF17871 AAA lid domain JS278_00668 PF07690 Major Facilitator Superfamily JS278_00670 PF00145 C-5 cytosine-specific DNA methylase JS278_00684 PF07690 Major Facilitator Superfamily JS278_00685 PF01370 NAD dependent epimerase/dehydratase family JS278_00685 PF08338 Domain of unknown function (DUF1731) JS278_00686 PF01694 Rhomboid family JS278_00688 PF01547 Bacterial extracellular solute-binding protein JS278_00690 PF08402 TOBE domain JS278_00690 PF00005 ABC transporter JS278_00694 PF10576 Iron-sulfur binding domain of endonuclease III JS278_00694 PF00633 Helix-hairpin-helix motif JS278_00694 PF00730 HhH-GPD superfamily base excision DNA repair protein JS278_00695 PF00202 Aminotransferase class-III JS278_00696 PF00490 Delta-aminolevulinic acid dehydratase JS278_00698 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JS278_00698 PF03900 Porphobilinogen deaminase, C-terminal domain JS278_00699 PF01593 Flavin containing amine oxidoreductase JS278_00700 PF01208 Uroporphyrinogen decarboxylase (URO-D) JS278_00701 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JS278_00701 PF01488 Shikimate / quinate 5-dehydrogenase JS278_00701 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JS278_00704 PF02457 DisA bacterial checkpoint controller nucleotide-binding JS278_00704 PF10635 DisA bacterial checkpoint controller linker region JS278_00705 PF06745 KaiC JS278_00705 PF18073 Rubredoxin metal binding domain JS278_00707 PF01261 Xylose isomerase-like TIM barrel JS278_00710 PF02774 Semialdehyde dehydrogenase, dimerisation domain JS278_00710 PF01118 Semialdehyde dehydrogenase, NAD binding domain JS278_00711 PF03807 NADP oxidoreductase coenzyme F420-dependent JS278_00711 PF14748 Pyrroline-5-carboxylate reductase dimerisation JS278_00712 PF02629 CoA binding domain JS278_00712 PF06971 Putative DNA-binding protein N-terminus JS278_00713 PF10414 Sirohaem synthase dimerisation region JS278_00713 PF14824 Sirohaem biosynthesis protein central JS278_00713 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_00714 PF00300 Histidine phosphatase superfamily (branch 1) JS278_00715 PF08534 Redoxin JS278_00716 PF02683 Cytochrome C biogenesis protein transmembrane region JS278_00718 PF01578 Cytochrome C assembly protein JS278_00722 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JS278_00722 PF01266 FAD dependent oxidoreductase JS278_00723 PF00999 Sodium/hydrogen exchanger family JS278_00724 PF00291 Pyridoxal-phosphate dependent enzyme JS278_00724 PF00585 C-terminal regulatory domain of Threonine dehydratase JS278_00725 PF00920 Dehydratase family JS278_00727 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JS278_00727 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_00728 PF08021 Siderophore-interacting FAD-binding domain JS278_00728 PF04954 Siderophore-interacting protein JS278_00729 PF00005 ABC transporter JS278_00730 PF01032 FecCD transport family JS278_00731 PF01032 FecCD transport family JS278_00732 PF01497 Periplasmic binding protein JS278_00733 PF00005 ABC transporter JS278_00734 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00735 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00736 PF12849 PBP superfamily domain JS278_00737 PF00293 NUDIX domain JS278_00737 PF00300 Histidine phosphatase superfamily (branch 1) JS278_00738 PF02503 Polyphosphate kinase middle domain JS278_00738 PF13089 Polyphosphate kinase N-terminal domain JS278_00738 PF17941 Polyphosphate kinase C-terminal domain 1 JS278_00738 PF13090 Polyphosphate kinase C-terminal domain 2 JS278_00739 PF00486 Transcriptional regulatory protein, C terminal JS278_00743 PF00296 Luciferase-like monooxygenase JS278_00745 PF02580 D-Tyr-tRNA(Tyr) deacylase JS278_00748 PF08768 Domain of unknown function (DUF1794) JS278_00749 PF01571 Aminomethyltransferase folate-binding domain JS278_00750 PF02397 Bacterial sugar transferase JS278_00756 PF02583 Metal-sensitive transcriptional repressor JS278_00759 PF00709 Adenylosuccinate synthetase JS278_00761 PF01850 PIN domain JS278_00762 PF07704 Rv0623-like transcription factor JS278_00763 PF02844 Phosphoribosylglycinamide synthetase, N domain JS278_00763 PF02843 Phosphoribosylglycinamide synthetase, C domain JS278_00763 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JS278_00764 PF10397 Adenylosuccinate lyase C-terminus JS278_00764 PF00206 Lyase JS278_00765 PF01259 SAICAR synthetase JS278_00767 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JS278_00767 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JS278_00768 PF00324 Amino acid permease JS278_00769 PF00710 Asparaginase, N-terminal JS278_00769 PF17763 Glutaminase/Asparaginase C-terminal domain JS278_00772 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JS278_00772 PF02769 AIR synthase related protein, C-terminal domain JS278_00772 PF00586 AIR synthase related protein, N-terminal domain JS278_00773 PF01145 SPFH domain / Band 7 family JS278_00777 PF07687 Peptidase dimerisation domain JS278_00777 PF01546 Peptidase family M20/M25/M40 JS278_00779 PF00156 Phosphoribosyl transferase domain JS278_00780 PF00586 AIR synthase related protein, N-terminal domain JS278_00780 PF02769 AIR synthase related protein, C-terminal domain JS278_00785 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00809 PF10145 Phage-related minor tail protein JS278_00809 PF01464 Transglycosylase SLT domain JS278_00809 PF01551 Peptidase family M23 JS278_00820 PF07669 Eco57I restriction-modification methylase JS278_00821 PF04851 Type III restriction enzyme, res subunit JS278_00833 PF00083 Sugar (and other) transporter JS278_00835 PF00005 ABC transporter JS278_00835 PF17760 UvrA interaction domain JS278_00835 PF17755 UvrA DNA-binding domain JS278_00840 PF00403 Heavy-metal-associated domain JS278_00840 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_00840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JS278_00842 PF00440 Bacterial regulatory proteins, tetR family JS278_00844 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JS278_00844 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JS278_00847 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JS278_00847 PF00391 PEP-utilising enzyme, mobile domain JS278_00848 PF02909 Tetracyclin repressor-like, C-terminal domain JS278_00848 PF00440 Bacterial regulatory proteins, tetR family JS278_00849 PF07690 Major Facilitator Superfamily JS278_00854 PF01070 FMN-dependent dehydrogenase JS278_00855 PF00288 GHMP kinases N terminal domain JS278_00855 PF08544 GHMP kinases C terminal JS278_00857 PF08544 GHMP kinases C terminal JS278_00857 PF10509 Galactokinase galactose-binding signature JS278_00857 PF00288 GHMP kinases N terminal domain JS278_00858 PF00296 Luciferase-like monooxygenase JS278_00861 PF00296 Luciferase-like monooxygenase JS278_00862 PF13344 Haloacid dehalogenase-like hydrolase JS278_00866 PF01545 Cation efflux family JS278_00866 PF16916 Dimerisation domain of Zinc Transporter JS278_00867 PF00288 GHMP kinases N terminal domain JS278_00867 PF08544 GHMP kinases C terminal JS278_00867 PF10509 Galactokinase galactose-binding signature JS278_00869 PF14437 MafB19-like deaminase JS278_00870 PF03610 PTS system fructose IIA component JS278_00870 PF05524 PEP-utilising enzyme, N-terminal JS278_00870 PF00381 PTS HPr component phosphorylation site JS278_00870 PF00391 PEP-utilising enzyme, mobile domain JS278_00871 PF02734 DAK2 domain JS278_00872 PF02733 Dak1 domain JS278_00873 PF07690 Major Facilitator Superfamily JS278_00874 PF01040 UbiA prenyltransferase family JS278_00876 PF00005 ABC transporter JS278_00876 PF00664 ABC transporter transmembrane region JS278_00878 PF01209 ubiE/COQ5 methyltransferase family JS278_00879 PF00005 ABC transporter JS278_00883 PF00425 chorismate binding enzyme JS278_00884 PF01494 FAD binding domain JS278_00885 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JS278_00886 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JS278_00887 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JS278_00888 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JS278_00890 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JS278_00890 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JS278_00890 PF10531 SLBB domain JS278_00891 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JS278_00891 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JS278_00891 PF00384 Molybdopterin oxidoreductase JS278_00891 PF01568 Molydopterin dinucleotide binding domain JS278_00892 PF00146 NADH dehydrogenase JS278_00893 PF12838 4Fe-4S dicluster domain JS278_00894 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JS278_00895 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JS278_00896 PF00361 Proton-conducting membrane transporter JS278_00896 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JS278_00897 PF00361 Proton-conducting membrane transporter JS278_00898 PF00361 Proton-conducting membrane transporter JS278_00899 PF00348 Polyprenyl synthetase JS278_00900 PF03328 HpcH/HpaI aldolase/citrate lyase family JS278_00901 PF01431 Peptidase family M13 JS278_00901 PF05649 Peptidase family M13 JS278_00902 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JS278_00903 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JS278_00903 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JS278_00903 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JS278_00904 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JS278_00906 PF00037 4Fe-4S binding domain JS278_00910 PF04461 Protein of unknown function (DUF520) JS278_00914 PF00471 Ribosomal protein L33 JS278_00915 PF13452 N-terminal half of MaoC dehydratase JS278_00917 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JS278_00917 PF01565 FAD binding domain JS278_00918 PF12897 Alanine-glyoxylate amino-transferase JS278_00921 PF02357 Transcription termination factor nusG JS278_00922 PF03946 Ribosomal protein L11, N-terminal domain JS278_00922 PF00298 Ribosomal protein L11, RNA binding domain JS278_00923 PF00687 Ribosomal protein L1p/L10e family JS278_00924 PF00466 Ribosomal protein L10 JS278_00925 PF16320 Ribosomal protein L7/L12 dimerisation domain JS278_00925 PF00542 Ribosomal protein L7/L12 C-terminal domain JS278_00926 PF04560 RNA polymerase Rpb2, domain 7 JS278_00926 PF00562 RNA polymerase Rpb2, domain 6 JS278_00926 PF10385 RNA polymerase beta subunit external 1 domain JS278_00926 PF04563 RNA polymerase beta subunit JS278_00926 PF04561 RNA polymerase Rpb2, domain 2 JS278_00926 PF04565 RNA polymerase Rpb2, domain 3 JS278_00927 PF04998 RNA polymerase Rpb1, domain 5 JS278_00927 PF05000 RNA polymerase Rpb1, domain 4 JS278_00927 PF00623 RNA polymerase Rpb1, domain 2 JS278_00927 PF04983 RNA polymerase Rpb1, domain 3 JS278_00927 PF04997 RNA polymerase Rpb1, domain 1 JS278_00930 PF00164 Ribosomal protein S12/S23 JS278_00931 PF00177 Ribosomal protein S7p/S5e JS278_00932 PF14492 Elongation Factor G, domain II JS278_00932 PF00679 Elongation factor G C-terminus JS278_00932 PF00009 Elongation factor Tu GTP binding domain JS278_00932 PF03144 Elongation factor Tu domain 2 JS278_00932 PF03764 Elongation factor G, domain IV JS278_00933 PF03143 Elongation factor Tu C-terminal domain JS278_00933 PF00009 Elongation factor Tu GTP binding domain JS278_00933 PF03144 Elongation factor Tu domain 2 JS278_00936 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JS278_00936 PF00749 tRNA synthetases class I (E and Q), catalytic domain JS278_00937 PF00749 tRNA synthetases class I (E and Q), catalytic domain JS278_00938 PF00338 Ribosomal protein S10p/S20e JS278_00939 PF00297 Ribosomal protein L3 JS278_00940 PF00573 Ribosomal protein L4/L1 family JS278_00941 PF00276 Ribosomal protein L23 JS278_00942 PF03947 Ribosomal Proteins L2, C-terminal domain JS278_00942 PF00181 Ribosomal Proteins L2, RNA binding domain JS278_00943 PF00203 Ribosomal protein S19 JS278_00944 PF00237 Ribosomal protein L22p/L17e JS278_00945 PF07650 KH domain JS278_00945 PF00189 Ribosomal protein S3, C-terminal domain JS278_00946 PF00252 Ribosomal protein L16p/L10e JS278_00947 PF00831 Ribosomal L29 protein JS278_00948 PF00366 Ribosomal protein S17 JS278_00949 PF00005 ABC transporter JS278_00949 PF17755 UvrA DNA-binding domain JS278_00949 PF17760 UvrA interaction domain JS278_00950 PF00238 Ribosomal protein L14p/L23e JS278_00951 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JS278_00951 PF00467 KOW motif JS278_00952 PF00281 Ribosomal protein L5 JS278_00952 PF00673 ribosomal L5P family C-terminus JS278_00953 PF00253 Ribosomal protein S14p/S29e JS278_00954 PF00410 Ribosomal protein S8 JS278_00955 PF00347 Ribosomal protein L6 JS278_00956 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JS278_00957 PF03719 Ribosomal protein S5, C-terminal domain JS278_00957 PF00333 Ribosomal protein S5, N-terminal domain JS278_00958 PF00327 Ribosomal protein L30p/L7e JS278_00959 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JS278_00960 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00961 PF00528 Binding-protein-dependent transport system inner membrane component JS278_00961 PF12911 N-terminal TM domain of oligopeptide transport permease C JS278_00962 PF00005 ABC transporter JS278_00962 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JS278_00963 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JS278_00965 PF00344 SecY translocase JS278_00967 PF00557 Metallopeptidase family M24 JS278_00970 PF01176 Translation initiation factor 1A / IF-1 JS278_00971 PF00444 Ribosomal protein L36 JS278_00972 PF00416 Ribosomal protein S13/S18 JS278_00973 PF00411 Ribosomal protein S11 JS278_00974 PF00163 Ribosomal protein S4/S9 N-terminal domain JS278_00974 PF01479 S4 domain JS278_00975 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JS278_00975 PF01000 RNA polymerase Rpb3/RpoA insert domain JS278_00975 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JS278_00976 PF01196 Ribosomal protein L17 JS278_00977 PF00665 Integrase core domain JS278_00977 PF13936 Helix-turn-helix domain JS278_00978 PF01527 Transposase JS278_00979 PF13276 HTH-like domain JS278_00979 PF00665 Integrase core domain JS278_00980 PF13579 Glycosyl transferase 4-like domain JS278_00980 PF00534 Glycosyl transferases group 1 JS278_00982 PF00958 GMP synthase C terminal domain JS278_00982 PF00117 Glutamine amidotransferase class-I JS278_00982 PF02540 NAD synthase JS278_00983 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JS278_00983 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JS278_00985 PF00005 ABC transporter JS278_00986 PF02361 Cobalt transport protein JS278_00988 PF05175 Methyltransferase small domain JS278_00988 PF08468 Methyltransferase small domain N-terminal JS278_00989 PF01416 tRNA pseudouridine synthase JS278_00990 PF02390 Putative methyltransferase JS278_00992 PF00572 Ribosomal protein L13 JS278_00993 PF00380 Ribosomal protein S9/S16 JS278_00995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JS278_00995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JS278_00995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JS278_00995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JS278_00997 PF00485 Phosphoribulokinase / Uridine kinase family JS278_00998 PF08241 Methyltransferase domain JS278_00999 PF01380 SIS domain JS278_01000 PF01648 4'-phosphopantetheinyl transferase superfamily JS278_01001 PF01256 Carbohydrate kinase JS278_01001 PF03853 YjeF-related protein N-terminus JS278_01002 PF13439 Glycosyltransferase Family 4 JS278_01002 PF00534 Glycosyl transferases group 1 JS278_01003 PF00270 DEAD/DEAH box helicase JS278_01003 PF00271 Helicase conserved C-terminal domain JS278_01004 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JS278_01005 PF00583 Acetyltransferase (GNAT) family JS278_01005 PF00814 Glycoprotease family JS278_01007 PF00814 Glycoprotease family JS278_01008 PF03051 Peptidase C1-like family JS278_01011 PF01875 Memo-like protein JS278_01013 PF18096 THUMP domain-like JS278_01015 PF00166 Chaperonin 10 Kd subunit JS278_01016 PF00118 TCP-1/cpn60 chaperonin family JS278_01018 PF00478 IMP dehydrogenase / GMP reductase domain JS278_01018 PF00571 CBS domain JS278_01019 PF00478 IMP dehydrogenase / GMP reductase domain JS278_01020 PF02153 Prephenate dehydrogenase JS278_01020 PF01817 Chorismate mutase type II JS278_01021 PF06426 Serine acetyltransferase, N-terminal JS278_01021 PF00132 Bacterial transferase hexapeptide (six repeats) JS278_01022 PF02540 NAD synthase JS278_01022 PF00117 Glutamine amidotransferase class-I JS278_01022 PF00958 GMP synthase C terminal domain JS278_01027 PF00072 Response regulator receiver domain JS278_01027 PF00196 Bacterial regulatory proteins, luxR family JS278_01028 PF04226 Transglycosylase associated protein JS278_01029 PF13091 PLD-like domain JS278_01029 PF13396 Phospholipase_D-nuclease N-terminal JS278_01030 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01031 PF00005 ABC transporter JS278_01031 PF09383 NIL domain JS278_01032 PF03180 NLPA lipoprotein JS278_01034 PF00580 UvrD/REP helicase N-terminal domain JS278_01034 PF13361 UvrD-like helicase C-terminal domain JS278_01035 PF01551 Peptidase family M23 JS278_01035 PF08460 Bacterial SH3 domain JS278_01036 PF00549 CoA-ligase JS278_01036 PF08442 ATP-grasp domain JS278_01037 PF00549 CoA-ligase JS278_01037 PF02629 CoA binding domain JS278_01040 PF01872 RibD C-terminal domain JS278_01040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JS278_01041 PF00677 Lumazine binding domain JS278_01042 PF00925 GTP cyclohydrolase II JS278_01042 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JS278_01043 PF00885 6,7-dimethyl-8-ribityllumazine synthase JS278_01044 PF00551 Formyl transferase JS278_01045 PF02142 MGS-like domain JS278_01045 PF01808 AICARFT/IMPCHase bienzyme JS278_01047 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JS278_01047 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JS278_01049 PF00171 Aldehyde dehydrogenase family JS278_01050 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JS278_01050 PF00056 lactate/malate dehydrogenase, NAD binding domain JS278_01051 PF00551 Formyl transferase JS278_01052 PF03971 Monomeric isocitrate dehydrogenase JS278_01054 PF01595 Cyclin M transmembrane N-terminal domain JS278_01054 PF03471 Transporter associated domain JS278_01054 PF00571 CBS domain JS278_01056 PF02608 ABC transporter substrate-binding protein PnrA-like JS278_01060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JS278_01061 PF00075 RNase H JS278_01062 PF01850 PIN domain JS278_01063 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JS278_01064 PF08264 Anticodon-binding domain of tRNA JS278_01064 PF09334 tRNA synthetases class I (M) JS278_01067 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JS278_01067 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JS278_01067 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JS278_01067 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JS278_01068 PF01048 Phosphorylase superfamily JS278_01069 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JS278_01069 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_01071 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JS278_01071 PF00364 Biotin-requiring enzyme JS278_01071 PF00289 Biotin carboxylase, N-terminal domain JS278_01071 PF02785 Biotin carboxylase C-terminal domain JS278_01073 PF08543 Phosphomethylpyrimidine kinase JS278_01075 PF00106 short chain dehydrogenase JS278_01078 PF02545 Maf-like protein JS278_01080 PF01039 Carboxyl transferase domain JS278_01082 PF03575 Peptidase family S51 JS278_01084 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JS278_01084 PF02222 ATP-grasp domain JS278_01085 PF00731 AIR carboxylase JS278_01086 PF03816 Cell envelope-related transcriptional attenuator domain JS278_01089 PF01050 Mannose-6-phosphate isomerase JS278_01089 PF00483 Nucleotidyl transferase JS278_01091 PF02467 Transcription factor WhiB JS278_01098 PF16916 Dimerisation domain of Zinc Transporter JS278_01098 PF01545 Cation efflux family JS278_01099 PF01220 Dehydroquinase class II JS278_01102 PF02446 4-alpha-glucanotransferase JS278_01103 PF00216 Bacterial DNA-binding protein JS278_01104 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JS278_01104 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JS278_01105 PF02617 ATP-dependent Clp protease adaptor protein ClpS JS278_01108 PF17910 FeoB cytosolic helical domain JS278_01108 PF07664 Ferrous iron transport protein B C terminus JS278_01108 PF04023 FeoA domain JS278_01108 PF02421 Ferrous iron transport protein B JS278_01108 PF07670 Nucleoside recognition JS278_01110 PF01177 Asp/Glu/Hydantoin racemase JS278_01111 PF01138 3' exoribonuclease family, domain 1 JS278_01111 PF03725 3' exoribonuclease family, domain 2 JS278_01112 PF01725 Ham1 family JS278_01113 PF00303 Thymidylate synthase JS278_01114 PF00186 Dihydrofolate reductase JS278_01115 PF00817 impB/mucB/samB family JS278_01115 PF11799 impB/mucB/samB family C-terminal domain JS278_01116 PF00072 Response regulator receiver domain JS278_01116 PF00196 Bacterial regulatory proteins, luxR family JS278_01117 PF07730 Histidine kinase JS278_01117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_01121 PF00005 ABC transporter JS278_01122 PF00196 Bacterial regulatory proteins, luxR family JS278_01122 PF00072 Response regulator receiver domain JS278_01123 PF07730 Histidine kinase JS278_01123 PF17200 Single Cache domain 2 JS278_01125 PF00578 AhpC/TSA family JS278_01128 PF00117 Glutamine amidotransferase class-I JS278_01132 PF07685 CobB/CobQ-like glutamine amidotransferase domain JS278_01133 PF01225 Mur ligase family, catalytic domain JS278_01133 PF08245 Mur ligase middle domain JS278_01133 PF02875 Mur ligase family, glutamate ligase domain JS278_01136 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JS278_01136 PF07733 Bacterial DNA polymerase III alpha NTPase domain JS278_01136 PF14579 Helix-hairpin-helix motif JS278_01136 PF02811 PHP domain JS278_01137 PF13520 Amino acid permease JS278_01143 PF00324 Amino acid permease JS278_01147 PF12802 MarR family JS278_01150 PF00132 Bacterial transferase hexapeptide (six repeats) JS278_01153 PF00176 SNF2 family N-terminal domain JS278_01153 PF00271 Helicase conserved C-terminal domain JS278_01155 PF00391 PEP-utilising enzyme, mobile domain JS278_01155 PF02896 PEP-utilising enzyme, TIM barrel domain JS278_01155 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JS278_01156 PF03352 Methyladenine glycosylase JS278_01159 PF13439 Glycosyltransferase Family 4 JS278_01159 PF00534 Glycosyl transferases group 1 JS278_01161 PF00107 Zinc-binding dehydrogenase JS278_01161 PF08240 Alcohol dehydrogenase GroES-like domain JS278_01162 PF01638 HxlR-like helix-turn-helix JS278_01163 PF01047 MarR family JS278_01168 PF01695 IstB-like ATP binding protein JS278_01173 PF00929 Exonuclease JS278_01177 PF12848 ABC transporter JS278_01177 PF00005 ABC transporter JS278_01178 PF02913 FAD linked oxidases, C-terminal domain JS278_01178 PF01565 FAD binding domain JS278_01178 PF13183 4Fe-4S dicluster domain JS278_01180 PF00501 AMP-binding enzyme JS278_01181 PF00501 AMP-binding enzyme JS278_01187 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JS278_01187 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JS278_01189 PF11838 ERAP1-like C-terminal domain JS278_01189 PF01433 Peptidase family M1 domain JS278_01190 PF01323 DSBA-like thioredoxin domain JS278_01191 PF03120 NAD-dependent DNA ligase OB-fold domain JS278_01191 PF01653 NAD-dependent DNA ligase adenylation domain JS278_01191 PF00533 BRCA1 C Terminus (BRCT) domain JS278_01191 PF12826 Helix-hairpin-helix motif JS278_01191 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JS278_01193 PF13530 Sterol carrier protein domain JS278_01193 PF17668 Acetyltransferase (GNAT) domain JS278_01194 PF02502 Ribose/Galactose Isomerase JS278_01195 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JS278_01195 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JS278_01195 PF06827 Zinc finger found in FPG and IleRS JS278_01197 PF09924 Uncharacterised conserved protein (DUF2156) JS278_01197 PF00152 tRNA synthetases class II (D, K and N) JS278_01197 PF01336 OB-fold nucleic acid binding domain JS278_01197 PF16995 Transmembrane region of lysyl-tRNA synthetase JS278_01206 PF00589 Phage integrase family JS278_01206 PF02899 Phage integrase, N-terminal SAM-like domain JS278_01212 PF05697 Bacterial trigger factor protein (TF) JS278_01212 PF05698 Bacterial trigger factor protein (TF) C-terminus JS278_01212 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JS278_01213 PF01594 AI-2E family transporter JS278_01214 PF00574 Clp protease JS278_01215 PF00574 Clp protease JS278_01216 PF06689 ClpX C4-type zinc finger JS278_01216 PF07724 AAA domain (Cdc48 subfamily) JS278_01216 PF10431 C-terminal, D2-small domain, of ClpB protein JS278_01218 PF07676 WD40-like Beta Propeller Repeat JS278_01218 PF03572 Peptidase family S41 JS278_01218 PF14684 Tricorn protease C1 domain JS278_01218 PF14685 Tricorn protease PDZ domain JS278_01220 PF00133 tRNA synthetases class I (I, L, M and V) JS278_01220 PF08264 Anticodon-binding domain of tRNA JS278_01222 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JS278_01224 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JS278_01224 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JS278_01225 PF01040 UbiA prenyltransferase family JS278_01226 PF02628 Cytochrome oxidase assembly protein JS278_01228 PF00005 ABC transporter JS278_01229 PF03030 Inorganic H+ pyrophosphatase JS278_01230 PF00356 Bacterial regulatory proteins, lacI family JS278_01231 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01232 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01232 PF14785 Maltose transport system permease protein MalF P2 domain JS278_01235 PF01458 Uncharacterized protein family (UPF0051) JS278_01236 PF01458 Uncharacterized protein family (UPF0051) JS278_01237 PF00355 Rieske [2Fe-2S] domain JS278_01238 PF00005 ABC transporter JS278_01239 PF00266 Aminotransferase class-V JS278_01240 PF01592 NifU-like N terminal domain JS278_01241 PF01883 Iron-sulfur cluster assembly protein JS278_01244 PF04228 Putative neutral zinc metallopeptidase JS278_01248 PF13673 Acetyltransferase (GNAT) domain JS278_01249 PF12848 ABC transporter JS278_01249 PF00005 ABC transporter JS278_01259 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JS278_01259 PF13288 DXP reductoisomerase C-terminal domain JS278_01259 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JS278_01260 PF00005 ABC transporter JS278_01262 PF01145 SPFH domain / Band 7 family JS278_01263 PF13593 SBF-like CPA transporter family (DUF4137) JS278_01264 PF00588 SpoU rRNA Methylase family JS278_01274 PF01327 Polypeptide deformylase JS278_01277 PF00589 Phage integrase family JS278_01277 PF02899 Phage integrase, N-terminal SAM-like domain JS278_01278 PF01551 Peptidase family M23 JS278_01280 PF05762 VWA domain containing CoxE-like protein JS278_01282 PF07728 AAA domain (dynein-related subfamily) JS278_01283 PF13569 Domain of unknown function (DUF4132) JS278_01284 PF00318 Ribosomal protein S2 JS278_01285 PF00889 Elongation factor TS JS278_01286 PF00696 Amino acid kinase family JS278_01287 PF01765 Ribosome recycling factor JS278_01289 PF04055 Radical SAM superfamily JS278_01290 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JS278_01290 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JS278_01292 PF17820 PDZ domain JS278_01292 PF02163 Peptidase family M50 JS278_01294 PF04551 GcpE protein JS278_01296 PF07732 Multicopper oxidase JS278_01296 PF07731 Multicopper oxidase JS278_01297 PF01850 PIN domain JS278_01298 PF04174 A circularly permuted ATPgrasp JS278_01299 PF14403 Circularly permuted ATP-grasp type 2 JS278_01299 PF04168 A predicted alpha-helical domain with a conserved ER motif. JS278_01300 PF08379 Bacterial transglutaminase-like N-terminal region JS278_01300 PF01841 Transglutaminase-like superfamily JS278_01302 PF03129 Anticodon binding domain JS278_01302 PF04073 Aminoacyl-tRNA editing domain JS278_01302 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JS278_01304 PF01925 Sulfite exporter TauE/SafE JS278_01306 PF02576 RimP N-terminal domain JS278_01306 PF17384 RimP C-terminal SH3 domain JS278_01307 PF13184 NusA-like KH domain JS278_01307 PF08529 NusA N-terminal domain JS278_01308 PF04760 Translation initiation factor IF-2, N-terminal region JS278_01308 PF11987 Translation-initiation factor 2 JS278_01308 PF00009 Elongation factor Tu GTP binding domain JS278_01309 PF03109 ABC1 family JS278_01310 PF02033 Ribosome-binding factor A JS278_01311 PF13685 Iron-containing alcohol dehydrogenase JS278_01313 PF03829 PTS system glucitol/sorbitol-specific IIA component JS278_01314 PF07663 Sorbitol phosphotransferase enzyme II C-terminus JS278_01314 PF03612 Sorbitol phosphotransferase enzyme II N-terminus JS278_01315 PF03608 PTS system enzyme II sorbitol-specific factor JS278_01318 PF00106 short chain dehydrogenase JS278_01319 PF00923 Transaldolase/Fructose-6-phosphate aldolase JS278_01320 PF09142 tRNA Pseudouridine synthase II, C terminal JS278_01320 PF16198 tRNA pseudouridylate synthase B C-terminal domain JS278_01320 PF01509 TruB family pseudouridylate synthase (N terminal domain) JS278_01321 PF01687 Riboflavin kinase JS278_01321 PF06574 FAD synthetase JS278_01322 PF00312 Ribosomal protein S15 JS278_01323 PF00013 KH domain JS278_01323 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JS278_01323 PF00575 S1 RNA binding domain JS278_01323 PF01138 3' exoribonuclease family, domain 1 JS278_01324 PF05173 Dihydrodipicolinate reductase, C-terminus JS278_01324 PF01113 Dihydrodipicolinate reductase, N-terminus JS278_01326 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JS278_01326 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JS278_01326 PF00205 Thiamine pyrophosphate enzyme, central domain JS278_01328 PF17770 Ribonuclease J C-terminal domain JS278_01328 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JS278_01328 PF12706 Beta-lactamase superfamily domain JS278_01329 PF00830 Ribosomal L28 family JS278_01330 PF00270 DEAD/DEAH box helicase JS278_01330 PF17191 RecG wedge domain JS278_01330 PF00271 Helicase conserved C-terminal domain JS278_01331 PF12900 Pyridoxamine 5'-phosphate oxidase JS278_01333 PF01467 Cytidylyltransferase-like JS278_01334 PF02620 Large ribosomal RNA subunit accumulation protein YceD JS278_01335 PF01783 Ribosomal L32p protein family JS278_01336 PF14622 Ribonuclease-III-like JS278_01336 PF00035 Double-stranded RNA binding motif JS278_01337 PF06827 Zinc finger found in FPG and IleRS JS278_01337 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JS278_01337 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JS278_01340 PF02881 SRP54-type protein, helical bundle domain JS278_01340 PF00448 SRP54-type protein, GTPase domain JS278_01342 PF02881 SRP54-type protein, helical bundle domain JS278_01342 PF00448 SRP54-type protein, GTPase domain JS278_01342 PF02978 Signal peptide binding domain JS278_01343 PF01979 Amidohydrolase family JS278_01344 PF00886 Ribosomal protein S16 JS278_01346 PF05239 PRC-barrel domain JS278_01346 PF01782 RimM N-terminal domain JS278_01347 PF01746 tRNA (Guanine-1)-methyltransferase JS278_01349 PF02910 Fumarate reductase flavoprotein C-term JS278_01349 PF00890 FAD binding domain JS278_01350 PF13183 4Fe-4S dicluster domain JS278_01350 PF13085 2Fe-2S iron-sulfur cluster binding domain JS278_01351 PF01245 Ribosomal protein L19 JS278_01352 PF10502 Signal peptidase, peptidase S26 JS278_01353 PF01351 Ribonuclease HII JS278_01354 PF10611 Protein of unknown function (DUF2469) JS278_01355 PF02021 Uncharacterised protein family UPF0102 JS278_01356 PF01078 Magnesium chelatase, subunit ChlI JS278_01356 PF13335 Magnesium chelatase, subunit ChlI C-terminal JS278_01357 PF17782 DprA winged helix domain JS278_01357 PF02481 DNA recombination-mediator protein A JS278_01359 PF06964 Alpha-L-arabinofuranosidase C-terminal domain JS278_01361 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01362 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01363 PF00356 Bacterial regulatory proteins, lacI family JS278_01364 PF00083 Sugar (and other) transporter JS278_01367 PF00596 Class II Aldolase and Adducin N-terminal domain JS278_01368 PF02610 L-arabinose isomerase JS278_01368 PF11762 L-arabinose isomerase C-terminal domain JS278_01369 PF00356 Bacterial regulatory proteins, lacI family JS278_01370 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_01370 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_01372 PF00083 Sugar (and other) transporter JS278_01373 PF00356 Bacterial regulatory proteins, lacI family JS278_01375 PF07687 Peptidase dimerisation domain JS278_01375 PF01546 Peptidase family M20/M25/M40 JS278_01376 PF00285 Citrate synthase, C-terminal domain JS278_01377 PF00248 Aldo/keto reductase family JS278_01379 PF04973 Nicotinamide mononucleotide transporter JS278_01380 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JS278_01381 PF01634 ATP phosphoribosyltransferase JS278_01381 PF08029 HisG, C-terminal domain JS278_01388 PF18407 GCN5-related N-acetyltransferase like domain JS278_01388 PF13344 Haloacid dehalogenase-like hydrolase JS278_01389 PF02632 BioY family JS278_01390 PF00005 ABC transporter JS278_01391 PF02361 Cobalt transport protein JS278_01392 PF01479 S4 domain JS278_01392 PF01728 FtsJ-like methyltransferase JS278_01393 PF01513 ATP-NAD kinase JS278_01394 PF02463 RecF/RecN/SMC N terminal domain JS278_01395 PF00117 Glutamine amidotransferase class-I JS278_01395 PF06418 CTP synthase N-terminus JS278_01397 PF00589 Phage integrase family JS278_01397 PF02899 Phage integrase, N-terminal SAM-like domain JS278_01398 PF13614 AAA domain JS278_01400 PF01479 S4 domain JS278_01400 PF00849 RNA pseudouridylate synthase JS278_01402 PF00749 tRNA synthetases class I (E and Q), catalytic domain JS278_01403 PF13280 WYL domain JS278_01404 PF13280 WYL domain JS278_01406 PF02416 mttA/Hcf106 family JS278_01407 PF00902 Sec-independent protein translocase protein (TatC) JS278_01408 PF00781 Diacylglycerol kinase catalytic domain JS278_01409 PF00271 Helicase conserved C-terminal domain JS278_01409 PF00270 DEAD/DEAH box helicase JS278_01409 PF08148 DSHCT (NUC185) domain JS278_01410 PF00977 Histidine biosynthesis protein JS278_01411 PF01230 HIT domain JS278_01412 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JS278_01412 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JS278_01412 PF00205 Thiamine pyrophosphate enzyme, central domain JS278_01413 PF10369 Small subunit of acetolactate synthase JS278_01414 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JS278_01414 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JS278_01418 PF00180 Isocitrate/isopropylmalate dehydrogenase JS278_01419 PF01063 Amino-transferase class IV JS278_01420 PF00682 HMGL-like JS278_01420 PF08502 LeuA allosteric (dimerisation) domain JS278_01421 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JS278_01421 PF00591 Glycosyl transferase family, a/b domain JS278_01421 PF02885 Glycosyl transferase family, helical bundle domain JS278_01422 PF01557 Fumarylacetoacetate (FAA) hydrolase family JS278_01426 PF01614 Bacterial transcriptional regulator JS278_01426 PF09339 IclR helix-turn-helix domain JS278_01427 PF00330 Aconitase family (aconitate hydratase) JS278_01428 PF00694 Aconitase C-terminal domain JS278_01430 PF07478 D-ala D-ala ligase C-terminus JS278_01430 PF01820 D-ala D-ala ligase N-terminus JS278_01432 PF00586 AIR synthase related protein, N-terminal domain JS278_01432 PF02769 AIR synthase related protein, C-terminal domain JS278_01433 PF09397 Ftsk gamma domain JS278_01433 PF17854 FtsK alpha domain JS278_01433 PF01580 FtsK/SpoIIIE family JS278_01435 PF05656 Protein of unknown function (DUF805) JS278_01437 PF00248 Aldo/keto reductase family JS278_01439 PF00472 RF-1 domain JS278_01439 PF03462 PCRF domain JS278_01440 PF00005 ABC transporter JS278_01441 PF02687 FtsX-like permease family JS278_01441 PF18075 FtsX extracellular domain JS278_01442 PF01668 SmpB protein JS278_01443 PF01118 Semialdehyde dehydrogenase, NAD binding domain JS278_01443 PF02774 Semialdehyde dehydrogenase, dimerisation domain JS278_01444 PF01960 ArgJ family JS278_01445 PF00696 Amino acid kinase family JS278_01446 PF00202 Aminotransferase class-III JS278_01447 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JS278_01447 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JS278_01448 PF00206 Lyase JS278_01448 PF14698 Argininosuccinate lyase C-terminal JS278_01451 PF02622 Uncharacterized ACR, COG1678 JS278_01452 PF00486 Transcriptional regulatory protein, C terminal JS278_01452 PF00072 Response regulator receiver domain JS278_01453 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_01453 PF00512 His Kinase A (phospho-acceptor) domain JS278_01453 PF00672 HAMP domain JS278_01454 PF10647 Lipoprotein LpqB beta-propeller domain JS278_01454 PF10646 Sporulation and spore germination JS278_01456 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JS278_01456 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JS278_01458 PF07516 SecA Wing and Scaffold domain JS278_01458 PF01043 SecA preprotein cross-linking domain JS278_01458 PF07517 SecA DEAD-like domain JS278_01462 PF02811 PHP domain JS278_01464 PF00579 tRNA synthetases class I (W and Y) JS278_01465 PF00271 Helicase conserved C-terminal domain JS278_01465 PF00270 DEAD/DEAH box helicase JS278_01469 PF00313 'Cold-shock' DNA-binding domain JS278_01470 PF00580 UvrD/REP helicase N-terminal domain JS278_01470 PF13361 UvrD-like helicase C-terminal domain JS278_01471 PF00580 UvrD/REP helicase N-terminal domain JS278_01471 PF13361 UvrD-like helicase C-terminal domain JS278_01472 PF09297 NADH pyrophosphatase zinc ribbon domain JS278_01472 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JS278_01472 PF00293 NUDIX domain JS278_01473 PF13538 UvrD-like helicase C-terminal domain JS278_01474 PF13361 UvrD-like helicase C-terminal domain JS278_01474 PF12705 PD-(D/E)XK nuclease superfamily JS278_01474 PF00580 UvrD/REP helicase N-terminal domain JS278_01475 PF17946 RecC C-terminal domain JS278_01476 PF00570 HRDC domain JS278_01476 PF00580 UvrD/REP helicase N-terminal domain JS278_01476 PF13361 UvrD-like helicase C-terminal domain JS278_01480 PF13180 PDZ domain JS278_01480 PF05362 Lon protease (S16) C-terminal proteolytic domain JS278_01482 PF03699 Uncharacterised protein family (UPF0182) JS278_01488 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JS278_01489 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01491 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JS278_01491 PF00005 ABC transporter JS278_01492 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JS278_01492 PF00005 ABC transporter JS278_01493 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JS278_01493 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JS278_01494 PF00459 Inositol monophosphatase family JS278_01495 PF03193 RsgA GTPase JS278_01496 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JS278_01498 PF08281 Sigma-70, region 4 JS278_01498 PF04542 Sigma-70 region 2 JS278_01500 PF07568 Histidine kinase JS278_01500 PF12282 Signal transduction histidine kinase JS278_01500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_01501 PF02467 Transcription factor WhiB JS278_01504 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JS278_01504 PF00676 Dehydrogenase E1 component JS278_01504 PF02779 Transketolase, pyrimidine binding domain JS278_01504 PF16078 2-oxoglutarate dehydrogenase N-terminus JS278_01504 PF16870 2-oxoglutarate dehydrogenase C-terminal JS278_01506 PF03641 Possible lysine decarboxylase JS278_01508 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JS278_01508 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JS278_01509 PF01842 ACT domain JS278_01509 PF03447 Homoserine dehydrogenase, NAD binding domain JS278_01509 PF00742 Homoserine dehydrogenase JS278_01510 PF08544 GHMP kinases C terminal JS278_01510 PF00288 GHMP kinases N terminal domain JS278_01511 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JS278_01511 PF07498 Rho termination factor, N-terminal domain JS278_01511 PF07497 Rho termination factor, RNA-binding domain JS278_01512 PF01197 Ribosomal protein L31 JS278_01513 PF00472 RF-1 domain JS278_01513 PF03462 PCRF domain JS278_01514 PF17827 PrmC N-terminal domain JS278_01514 PF13649 Methyltransferase domain JS278_01515 PF01300 Telomere recombination JS278_01516 PF00953 Glycosyl transferase family 4 JS278_01518 PF01943 Polysaccharide biosynthesis protein JS278_01527 PF13537 Glutamine amidotransferase domain JS278_01527 PF00733 Asparagine synthase JS278_01530 PF13193 AMP-binding enzyme C-terminal domain JS278_01530 PF00501 AMP-binding enzyme JS278_01532 PF02540 NAD synthase JS278_01533 PF00733 Asparagine synthase JS278_01533 PF13537 Glutamine amidotransferase domain JS278_01535 PF06426 Serine acetyltransferase, N-terminal JS278_01535 PF00132 Bacterial transferase hexapeptide (six repeats) JS278_01538 PF00119 ATP synthase A chain JS278_01539 PF00137 ATP synthase subunit C JS278_01540 PF00430 ATP synthase B/B' CF(0) JS278_01541 PF00213 ATP synthase delta (OSCP) subunit JS278_01542 PF02874 ATP synthase alpha/beta family, beta-barrel domain JS278_01542 PF00306 ATP synthase alpha/beta chain, C terminal domain JS278_01542 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JS278_01543 PF00231 ATP synthase JS278_01544 PF02874 ATP synthase alpha/beta family, beta-barrel domain JS278_01544 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JS278_01545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JS278_01547 PF01923 Cobalamin adenosyltransferase JS278_01548 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JS278_01549 PF00561 alpha/beta hydrolase fold JS278_01551 PF01939 Endonuclease NucS JS278_01556 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JS278_01556 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JS278_01556 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JS278_01556 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JS278_01557 PF00085 Thioredoxin JS278_01558 PF13419 Haloacid dehalogenase-like hydrolase JS278_01559 PF03636 Glycosyl hydrolase family 65, N-terminal domain JS278_01559 PF03632 Glycosyl hydrolase family 65 central catalytic domain JS278_01559 PF03633 Glycosyl hydrolase family 65, C-terminal domain JS278_01560 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JS278_01560 PF00367 phosphotransferase system, EIIB JS278_01560 PF02378 Phosphotransferase system, EIIC JS278_01561 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JS278_01561 PF02806 Alpha amylase, C-terminal all-beta domain JS278_01561 PF00128 Alpha amylase, catalytic domain JS278_01562 PF01636 Phosphotransferase enzyme family JS278_01562 PF18085 Maltokinase N-terminal cap domain JS278_01563 PF11896 Domain of unknown function (DUF3416) JS278_01564 PF00343 Carbohydrate phosphorylase JS278_01564 PF11897 Protein of unknown function (DUF3417) JS278_01566 PF00128 Alpha amylase, catalytic domain JS278_01566 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JS278_01567 PF00266 Aminotransferase class-V JS278_01573 PF00005 ABC transporter JS278_01574 PF00005 ABC transporter JS278_01576 PF09084 NMT1/THI5 like JS278_01579 PF02686 Glu-tRNAGln amidotransferase C subunit JS278_01580 PF01425 Amidase JS278_01581 PF02637 GatB domain JS278_01581 PF02934 GatB/GatE catalytic domain JS278_01582 PF00860 Permease family JS278_01585 PF01502 Phosphoribosyl-AMP cyclohydrolase JS278_01586 PF04715 Anthranilate synthase component I, N terminal region JS278_01586 PF00425 chorismate binding enzyme JS278_01589 PF00218 Indole-3-glycerol phosphate synthase JS278_01590 PF00291 Pyridoxal-phosphate dependent enzyme JS278_01591 PF00290 Tryptophan synthase alpha chain JS278_01592 PF01790 Prolipoprotein diacylglyceryl transferase JS278_01593 PF04898 Glutamate synthase central domain JS278_01593 PF00310 Glutamine amidotransferases class-II JS278_01593 PF01645 Conserved region in glutamate synthase JS278_01593 PF01493 GXGXG motif JS278_01594 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JS278_01594 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_01597 PF02811 PHP domain JS278_01597 PF07733 Bacterial DNA polymerase III alpha NTPase domain JS278_01597 PF14579 Helix-hairpin-helix motif JS278_01597 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JS278_01599 PF00815 Histidinol dehydrogenase JS278_01600 PF00155 Aminotransferase class I and II JS278_01601 PF00475 Imidazoleglycerol-phosphate dehydratase JS278_01602 PF00117 Glutamine amidotransferase class-I JS278_01603 PF00977 Histidine biosynthesis protein JS278_01604 PF01709 Transcriptional regulator JS278_01605 PF02075 Crossover junction endodeoxyribonuclease RuvC JS278_01606 PF07499 RuvA, C-terminal domain JS278_01606 PF01330 RuvA N terminal domain JS278_01607 PF17864 RuvB AAA lid domain JS278_01607 PF05491 RuvB C-terminal winged helix domain JS278_01607 PF05496 Holliday junction DNA helicase RuvB P-loop domain JS278_01609 PF02355 Protein export membrane protein JS278_01609 PF07549 SecD/SecF GG Motif JS278_01610 PF07549 SecD/SecF GG Motif JS278_01610 PF02355 Protein export membrane protein JS278_01611 PF00156 Phosphoribosyl transferase domain JS278_01613 PF13291 ACT domain JS278_01613 PF04607 Region found in RelA / SpoT proteins JS278_01613 PF02824 TGS domain JS278_01614 PF00291 Pyridoxal-phosphate dependent enzyme JS278_01614 PF14821 Threonine synthase N terminus JS278_01615 PF03993 Domain of Unknown Function (DUF349) JS278_01616 PF00753 Metallo-beta-lactamase superfamily JS278_01617 PF03129 Anticodon binding domain JS278_01617 PF13393 Histidyl-tRNA synthetase JS278_01618 PF01869 BadF/BadG/BcrA/BcrD ATPase family JS278_01619 PF09209 Tetracyclin repressor-like, C-terminal domain JS278_01619 PF00440 Bacterial regulatory proteins, tetR family JS278_01621 PF00152 tRNA synthetases class II (D, K and N) JS278_01621 PF02938 GAD domain JS278_01621 PF01336 OB-fold nucleic acid binding domain JS278_01622 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JS278_01626 PF16193 AAA C-terminal domain JS278_01626 PF00004 ATPase family associated with various cellular activities (AAA) JS278_01626 PF12002 MgsA AAA+ ATPase C terminal JS278_01630 PF02272 DHHA1 domain JS278_01630 PF01411 tRNA synthetases class II (A) JS278_01630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JS278_01631 PF03652 Holliday junction resolvase JS278_01632 PF02618 YceG-like family JS278_01633 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JS278_01633 PF08501 Shikimate dehydrogenase substrate binding domain JS278_01634 PF01264 Chorismate synthase JS278_01635 PF01202 Shikimate kinase JS278_01636 PF01761 3-dehydroquinate synthase JS278_01638 PF08207 Elongation factor P (EF-P) KOW-like domain JS278_01638 PF01132 Elongation factor P (EF-P) OB domain JS278_01638 PF09285 Elongation factor P, C-terminal JS278_01639 PF01029 NusB family JS278_01641 PF00625 Guanylate kinase JS278_01642 PF01192 RNA polymerase Rpb6 JS278_01643 PF04127 DNA / pantothenate metabolism flavoprotein JS278_01643 PF02441 Flavoprotein JS278_01644 PF00438 S-adenosylmethionine synthetase, N-terminal domain JS278_01644 PF02773 S-adenosylmethionine synthetase, C-terminal domain JS278_01644 PF02772 S-adenosylmethionine synthetase, central domain JS278_01645 PF00270 DEAD/DEAH box helicase JS278_01645 PF08494 DEAD/H associated JS278_01645 PF00271 Helicase conserved C-terminal domain JS278_01646 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JS278_01646 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JS278_01649 PF17764 3′ DNA-binding domain (3′BD) JS278_01650 PF00551 Formyl transferase JS278_01650 PF02911 Formyl transferase, C-terminal domain JS278_01651 PF01189 16S rRNA methyltransferase RsmB/F JS278_01651 PF01029 NusB family JS278_01652 PF00834 Ribulose-phosphate 3 epimerase family JS278_01654 PF02607 B12 binding domain JS278_01654 PF00809 Pterin binding enzyme JS278_01654 PF02965 Vitamin B12 dependent methionine synthase, activation domain JS278_01654 PF02574 Homocysteine S-methyltransferase JS278_01654 PF02310 B12 binding domain JS278_01655 PF08704 tRNA methyltransferase complex GCD14 subunit JS278_01657 PF00227 Proteasome subunit JS278_01658 PF00227 Proteasome subunit JS278_01659 PF02153 Prephenate dehydrogenase JS278_01660 PF02224 Cytidylate kinase JS278_01661 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JS278_01661 PF01926 50S ribosome-binding GTPase JS278_01663 PF02566 OsmC-like protein JS278_01664 PF00293 NUDIX domain JS278_01666 PF12137 RNA polymerase recycling family C-terminal JS278_01666 PF18339 RapA N-terminal Tudor like domain 1 JS278_01666 PF00176 SNF2 family N-terminal domain JS278_01666 PF00271 Helicase conserved C-terminal domain JS278_01666 PF18337 RapA N-terminal Tudor like domain JS278_01667 PF07669 Eco57I restriction-modification methylase JS278_01676 PF01695 IstB-like ATP binding protein JS278_01686 PF03976 Polyphosphate kinase 2 (PPK2) JS278_01688 PF09339 IclR helix-turn-helix domain JS278_01688 PF01614 Bacterial transcriptional regulator JS278_01690 PF00392 Bacterial regulatory proteins, gntR family JS278_01692 PF00202 Aminotransferase class-III JS278_01697 PF00440 Bacterial regulatory proteins, tetR family JS278_01697 PF13977 BetI-type transcriptional repressor, C-terminal JS278_01698 PF01212 Beta-eliminating lyase JS278_01700 PF00574 Clp protease JS278_01701 PF00574 Clp protease JS278_01702 PF13298 DNA polymerase Ligase (LigD) JS278_01702 PF01068 ATP dependent DNA ligase domain JS278_01702 PF04679 ATP dependent DNA ligase C terminal region JS278_01705 PF07804 HipA-like C-terminal domain JS278_01705 PF13657 HipA N-terminal domain JS278_01708 PF00145 C-5 cytosine-specific DNA methylase JS278_01708 PF12728 Helix-turn-helix domain JS278_01710 PF07690 Major Facilitator Superfamily JS278_01711 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JS278_01712 PF00248 Aldo/keto reductase family JS278_01713 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JS278_01713 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JS278_01714 PF01053 Cys/Met metabolism PLP-dependent enzyme JS278_01715 PF00561 alpha/beta hydrolase fold JS278_01716 PF07021 Methionine biosynthesis protein MetW JS278_01716 PF00561 alpha/beta hydrolase fold JS278_01717 PF01037 Lrp/AsnC ligand binding domain JS278_01718 PF00795 Carbon-nitrogen hydrolase JS278_01719 PF00535 Glycosyl transferase family 2 JS278_01720 PF13397 RNA polymerase-binding protein JS278_01721 PF03009 Glycerophosphoryl diester phosphodiesterase family JS278_01722 PF08543 Phosphomethylpyrimidine kinase JS278_01723 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JS278_01724 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_01724 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JS278_01725 PF02554 Carbon starvation protein CstA JS278_01725 PF13722 5TM C-terminal transporter carbon starvation CstA JS278_01728 PF13520 Amino acid permease JS278_01730 PF03167 Uracil DNA glycosylase superfamily JS278_01732 PF00012 Hsp70 protein JS278_01734 PF09186 Domain of unknown function (DUF1949) JS278_01734 PF01205 Uncharacterized protein family UPF0029 JS278_01735 PF00933 Glycosyl hydrolase family 3 N terminal domain JS278_01736 PF00781 Diacylglycerol kinase catalytic domain JS278_01737 PF01048 Phosphorylase superfamily JS278_01738 PF01300 Telomere recombination JS278_01740 PF00365 Phosphofructokinase JS278_01741 PF03631 Virulence factor BrkB JS278_01742 PF13411 MerR HTH family regulatory protein JS278_01743 PF02577 Bifunctional nuclease JS278_01744 PF00376 MerR family regulatory protein JS278_01745 PF00498 FHA domain JS278_01746 PF01597 Glycine cleavage H-protein JS278_01747 PF05949 Bacterial protein of unknown function (DUF881) JS278_01748 PF06947 Protein of unknown function (DUF1290) JS278_01749 PF05949 Bacterial protein of unknown function (DUF881) JS278_01751 PF13439 Glycosyltransferase Family 4 JS278_01752 PF03279 Bacterial lipid A biosynthesis acyltransferase JS278_01754 PF01230 HIT domain JS278_01755 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JS278_01755 PF03129 Anticodon binding domain JS278_01755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JS278_01756 PF00107 Zinc-binding dehydrogenase JS278_01756 PF08240 Alcohol dehydrogenase GroES-like domain JS278_01762 PF01641 SelR domain JS278_01765 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JS278_01765 PF02779 Transketolase, pyrimidine binding domain JS278_01765 PF02780 Transketolase, C-terminal domain JS278_01766 PF00694 Aconitase C-terminal domain JS278_01766 PF00330 Aconitase family (aconitate hydratase) JS278_01767 PF05958 tRNA (Uracil-5-)-methyltransferase JS278_01767 PF01938 TRAM domain JS278_01768 PF13520 Amino acid permease JS278_01769 PF02080 TrkA-C domain JS278_01769 PF02254 TrkA-N domain JS278_01770 PF02254 TrkA-N domain JS278_01770 PF02080 TrkA-C domain JS278_01773 PF00692 dUTPase JS278_01777 PF11268 Protein of unknown function (DUF3071) JS278_01780 PF03169 OPT oligopeptide transporter protein JS278_01782 PF03989 DNA gyrase C-terminal domain, beta-propeller JS278_01782 PF00521 DNA gyrase/topoisomerase IV, subunit A JS278_01783 PF00484 Carbonic anhydrase JS278_01786 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_01786 PF00986 DNA gyrase B subunit, carboxyl terminus JS278_01786 PF00204 DNA gyrase B JS278_01786 PF01751 Toprim domain JS278_01789 PF04542 Sigma-70 region 2 JS278_01789 PF00140 Sigma-70 factor, region 1.2 JS278_01789 PF04545 Sigma-70, region 4 JS278_01789 PF04539 Sigma-70 region 3 JS278_01790 PF04545 Sigma-70, region 4 JS278_01790 PF04539 Sigma-70 region 3 JS278_01790 PF04542 Sigma-70 region 2 JS278_01790 PF00140 Sigma-70 factor, region 1.2 JS278_01791 PF00271 Helicase conserved C-terminal domain JS278_01791 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JS278_01791 PF04408 Helicase associated domain (HA2) JS278_01791 PF11898 Domain of unknown function (DUF3418) JS278_01791 PF00270 DEAD/DEAH box helicase JS278_01796 PF00692 dUTPase JS278_01797 PF02867 Ribonucleotide reductase, barrel domain JS278_01797 PF08471 Class II vitamin B12-dependent ribonucleotide reductase JS278_01798 PF03477 ATP cone domain JS278_01800 PF13307 Helicase C-terminal domain JS278_01801 PF13167 GTP-binding GTPase N-terminal JS278_01801 PF16360 GTP-binding GTPase Middle Region JS278_01801 PF01926 50S ribosome-binding GTPase JS278_01802 PF01678 Diaminopimelate epimerase JS278_01805 PF04055 Radical SAM superfamily JS278_01805 PF00919 Uncharacterized protein family UPF0004 JS278_01806 PF01263 Aldose 1-epimerase JS278_01807 PF12072 Domain of unknown function (DUF3552) JS278_01807 PF00013 KH domain JS278_01807 PF01966 HD domain JS278_01808 PF02631 RecX family JS278_01809 PF00154 recA bacterial DNA recombination protein JS278_01811 PF08220 DeoR-like helix-turn-helix domain JS278_01811 PF00455 DeoR C terminal sensor domain JS278_01813 PF02464 Competence-damaged protein JS278_01813 PF00994 Probable molybdopterin binding domain JS278_01813 PF18146 Damage-inducible protein CinA KH domain JS278_01815 PF04055 Radical SAM superfamily JS278_01815 PF18693 TRAM domain JS278_01815 PF00919 Uncharacterized protein family UPF0004 JS278_01817 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JS278_01820 PF00156 Phosphoribosyl transferase domain JS278_01821 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JS278_01822 PF01180 Dihydroorotate dehydrogenase JS278_01823 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JS278_01823 PF00175 Oxidoreductase NAD-binding domain JS278_01824 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JS278_01824 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JS278_01824 PF02142 MGS-like domain JS278_01825 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JS278_01825 PF00117 Glutamine amidotransferase class-I JS278_01826 PF01979 Amidohydrolase family JS278_01827 PF00156 Phosphoribosyl transferase domain JS278_01830 PF00248 Aldo/keto reductase family JS278_01831 PF11253 Protein of unknown function (DUF3052) JS278_01832 PF17831 Pyruvate dehydrogenase E1 component middle domain JS278_01832 PF00456 Transketolase, thiamine diphosphate binding domain JS278_01833 PF13556 PucR C-terminal helix-turn-helix domain JS278_01833 PF17853 GGDEF-like domain JS278_01835 PF08546 Ketopantoate reductase PanE/ApbA C terminal JS278_01835 PF02558 Ketopantoate reductase PanE/ApbA JS278_01836 PF00698 Acyl transferase domain JS278_01837 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JS278_01837 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JS278_01838 PF00550 Phosphopantetheine attachment site JS278_01839 PF00109 Beta-ketoacyl synthase, N-terminal domain JS278_01839 PF02801 Beta-ketoacyl synthase, C-terminal domain JS278_01841 PF01168 Alanine racemase, N-terminal domain JS278_01842 PF07584 Aerotolerance regulator N-terminal JS278_01842 PF13519 von Willebrand factor type A domain JS278_01843 PF13519 von Willebrand factor type A domain JS278_01843 PF07584 Aerotolerance regulator N-terminal JS278_01844 PF01882 Protein of unknown function DUF58 JS278_01845 PF17863 AAA lid domain JS278_01845 PF07726 ATPase family associated with various cellular activities (AAA) JS278_01853 PF00583 Acetyltransferase (GNAT) family JS278_01854 PF07690 Major Facilitator Superfamily JS278_01856 PF00069 Protein kinase domain JS278_01857 PF03466 LysR substrate binding domain JS278_01857 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JS278_01858 PF01810 LysE type translocator JS278_01859 PF01174 SNO glutamine amidotransferase family JS278_01860 PF01680 SOR/SNZ family JS278_01861 PF00392 Bacterial regulatory proteins, gntR family JS278_01863 PF00291 Pyridoxal-phosphate dependent enzyme JS278_01865 PF00982 Glycosyltransferase family 20 JS278_01866 PF00005 ABC transporter JS278_01871 PF08275 DNA primase catalytic core, N-terminal domain JS278_01871 PF10410 DnaB-helicase binding domain of primase JS278_01871 PF08278 DNA primase DnaG DnaB-binding JS278_01871 PF01807 CHC2 zinc finger JS278_01871 PF13662 Toprim domain JS278_01872 PF13286 Phosphohydrolase-associated domain JS278_01872 PF01966 HD domain JS278_01875 PF01207 Dihydrouridine synthase (Dus) JS278_01878 PF02910 Fumarate reductase flavoprotein C-term JS278_01878 PF00890 FAD binding domain JS278_01880 PF00282 Pyridoxal-dependent decarboxylase conserved domain JS278_01882 PF02445 Quinolinate synthetase A protein JS278_01883 PF02910 Fumarate reductase flavoprotein C-term JS278_01883 PF00890 FAD binding domain JS278_01884 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JS278_01884 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JS278_01885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JS278_01885 PF03129 Anticodon binding domain JS278_01887 PF01475 Ferric uptake regulator family JS278_01888 PF02565 Recombination protein O C terminal JS278_01888 PF11967 Recombination protein O N terminal JS278_01889 PF00082 Subtilase family JS278_01891 PF01255 Putative undecaprenyl diphosphate synthase JS278_01893 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01894 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01895 PF00497 Bacterial extracellular solute-binding proteins, family 3 JS278_01896 PF00682 HMGL-like JS278_01896 PF08502 LeuA allosteric (dimerisation) domain JS278_01897 PF13382 Adenine deaminase C-terminal domain JS278_01897 PF01979 Amidohydrolase family JS278_01898 PF01926 50S ribosome-binding GTPase JS278_01898 PF07650 KH domain JS278_01899 PF03471 Transporter associated domain JS278_01899 PF00571 CBS domain JS278_01899 PF01595 Cyclin M transmembrane N-terminal domain JS278_01900 PF02130 Uncharacterized protein family UPF0054 JS278_01901 PF02562 PhoH-like protein JS278_01907 PF00561 alpha/beta hydrolase fold JS278_01912 PF00005 ABC transporter JS278_01912 PF13732 Domain of unknown function (DUF4162) JS278_01913 PF00196 Bacterial regulatory proteins, luxR family JS278_01913 PF00072 Response regulator receiver domain JS278_01914 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_01914 PF07730 Histidine kinase JS278_01915 PF01702 Queuine tRNA-ribosyltransferase JS278_01916 PF00892 EamA-like transporter family JS278_01918 PF00270 DEAD/DEAH box helicase JS278_01918 PF09382 RQC domain JS278_01918 PF00271 Helicase conserved C-terminal domain JS278_01918 PF00570 HRDC domain JS278_01918 PF16124 RecQ zinc-binding JS278_01920 PF02378 Phosphotransferase system, EIIC JS278_01920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JS278_01920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JS278_01921 PF01232 Mannitol dehydrogenase Rossmann domain JS278_01921 PF08125 Mannitol dehydrogenase C-terminal domain JS278_01922 PF04452 RNA methyltransferase JS278_01923 PF01556 DnaJ C terminal domain JS278_01923 PF00226 DnaJ domain JS278_01923 PF00684 DnaJ central domain JS278_01924 PF08220 DeoR-like helix-turn-helix domain JS278_01924 PF01628 HrcA protein C terminal domain JS278_01925 PF16123 Hydroxyacylglutathione hydrolase C-terminus JS278_01925 PF00753 Metallo-beta-lactamase superfamily JS278_01926 PF00459 Inositol monophosphatase family JS278_01928 PF04055 Radical SAM superfamily JS278_01930 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01931 PF00528 Binding-protein-dependent transport system inner membrane component JS278_01932 PF00083 Sugar (and other) transporter JS278_01932 PF07690 Major Facilitator Superfamily JS278_01933 PF17754 MftR C-terminal domain JS278_01933 PF00440 Bacterial regulatory proteins, tetR family JS278_01934 PF13732 Domain of unknown function (DUF4162) JS278_01934 PF00005 ABC transporter JS278_01936 PF00501 AMP-binding enzyme JS278_01936 PF16177 Acetyl-coenzyme A synthetase N-terminus JS278_01936 PF13193 AMP-binding enzyme C-terminal domain JS278_01937 PF16177 Acetyl-coenzyme A synthetase N-terminus JS278_01937 PF00501 AMP-binding enzyme JS278_01937 PF13193 AMP-binding enzyme C-terminal domain JS278_01938 PF01694 Rhomboid family JS278_01939 PF00378 Enoyl-CoA hydratase/isomerase JS278_01940 PF00501 AMP-binding enzyme JS278_01940 PF13193 AMP-binding enzyme C-terminal domain JS278_01941 PF00425 chorismate binding enzyme JS278_01942 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JS278_01942 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JS278_01943 PF18374 Enolase N-terminal domain-like JS278_01943 PF13378 Enolase C-terminal domain-like JS278_01947 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JS278_01948 PF06421 GTP-binding protein LepA C-terminus JS278_01948 PF00679 Elongation factor G C-terminus JS278_01948 PF00009 Elongation factor Tu GTP binding domain JS278_01948 PF03144 Elongation factor Tu domain 2 JS278_01949 PF01649 Ribosomal protein S20 JS278_01951 PF04851 Type III restriction enzyme, res subunit JS278_01952 PF00753 Metallo-beta-lactamase superfamily JS278_01952 PF03772 Competence protein JS278_01952 PF13567 Domain of unknown function (DUF4131) JS278_01954 PF08264 Anticodon-binding domain of tRNA JS278_01954 PF13603 Leucyl-tRNA synthetase, Domain 2 JS278_01954 PF00133 tRNA synthetases class I (I, L, M and V) JS278_01954 PF09334 tRNA synthetases class I (M) JS278_01958 PF01323 DSBA-like thioredoxin domain JS278_01961 PF02909 Tetracyclin repressor-like, C-terminal domain JS278_01961 PF00440 Bacterial regulatory proteins, tetR family JS278_01969 PF00005 ABC transporter JS278_01970 PF13977 BetI-type transcriptional repressor, C-terminal JS278_01970 PF00440 Bacterial regulatory proteins, tetR family JS278_01976 PF00005 ABC transporter JS278_01978 PF00753 Metallo-beta-lactamase superfamily JS278_01981 PF13175 AAA ATPase domain JS278_01983 PF01555 DNA methylase JS278_01988 PF00300 Histidine phosphatase superfamily (branch 1) JS278_01990 PF01467 Cytidylyltransferase-like JS278_01992 PF00171 Aldehyde dehydrogenase family JS278_01993 PF01472 PUA domain JS278_01993 PF00696 Amino acid kinase family JS278_01994 PF01926 50S ribosome-binding GTPase JS278_01994 PF01018 GTP1/OBG JS278_01994 PF09269 Domain of unknown function (DUF1967) JS278_01996 PF01016 Ribosomal L27 protein JS278_01997 PF00829 Ribosomal prokaryotic L21 protein JS278_01998 PF10150 Ribonuclease E/G family JS278_02000 PF00933 Glycosyl hydrolase family 3 N terminal domain JS278_02000 PF01915 Glycosyl hydrolase family 3 C-terminal domain JS278_02002 PF00334 Nucleoside diphosphate kinase JS278_02004 PF08245 Mur ligase middle domain JS278_02004 PF02875 Mur ligase family, glutamate ligase domain JS278_02006 PF03840 Preprotein translocase SecG subunit JS278_02007 PF00121 Triosephosphate isomerase JS278_02008 PF00162 Phosphoglycerate kinase JS278_02009 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JS278_02009 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JS278_02010 PF14527 WhiA LAGLIDADG-like domain JS278_02010 PF02650 WhiA C-terminal HTH domain JS278_02010 PF10298 WhiA N-terminal LAGLIDADG-like domain JS278_02011 PF01933 Uncharacterised protein family UPF0052 JS278_02012 PF03668 P-loop ATPase protein family JS278_02013 PF08459 UvrC Helix-hairpin-helix N-terminal JS278_02013 PF02151 UvrB/uvrC motif JS278_02013 PF01541 GIY-YIG catalytic domain JS278_02016 PF00005 ABC transporter JS278_02016 PF17755 UvrA DNA-binding domain JS278_02016 PF17760 UvrA interaction domain JS278_02018 PF03741 Integral membrane protein TerC family JS278_02019 PF12344 Ultra-violet resistance protein B JS278_02019 PF17757 UvrB interaction domain JS278_02019 PF02151 UvrB/uvrC motif JS278_02019 PF04851 Type III restriction enzyme, res subunit JS278_02019 PF00271 Helicase conserved C-terminal domain JS278_02020 PF01121 Dephospho-CoA kinase JS278_02021 PF00575 S1 RNA binding domain JS278_02023 PF02913 FAD linked oxidases, C-terminal domain JS278_02023 PF01565 FAD binding domain JS278_02024 PF00476 DNA polymerase family A JS278_02024 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JS278_02024 PF01367 5'-3' exonuclease, C-terminal SAM fold JS278_02025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_02026 PF03061 Thioesterase superfamily JS278_02027 PF00072 Response regulator receiver domain JS278_02027 PF03861 ANTAR domain JS278_02029 PF00224 Pyruvate kinase, barrel domain JS278_02029 PF02887 Pyruvate kinase, alpha/beta domain JS278_02030 PF00849 RNA pseudouridylate synthase JS278_02031 PF01252 Signal peptidase (SPase) II JS278_02032 PF01258 Prokaryotic dksA/traR C4-type zinc finger JS278_02035 PF04472 Cell division protein SepF JS278_02037 PF12327 FtsZ family, C-terminal domain JS278_02037 PF00091 Tubulin/FtsZ family, GTPase domain JS278_02038 PF08478 POTRA domain, FtsQ-type JS278_02039 PF08245 Mur ligase middle domain JS278_02039 PF02875 Mur ligase family, glutamate ligase domain JS278_02039 PF01225 Mur ligase family, catalytic domain JS278_02040 PF03033 Glycosyltransferase family 28 N-terminal domain JS278_02040 PF04101 Glycosyltransferase family 28 C-terminal domain JS278_02041 PF01098 Cell cycle protein JS278_02042 PF08245 Mur ligase middle domain JS278_02042 PF02875 Mur ligase family, glutamate ligase domain JS278_02043 PF00953 Glycosyl transferase family 4 JS278_02043 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JS278_02044 PF01225 Mur ligase family, catalytic domain JS278_02044 PF02875 Mur ligase family, glutamate ligase domain JS278_02044 PF08245 Mur ligase middle domain JS278_02045 PF01225 Mur ligase family, catalytic domain JS278_02045 PF02875 Mur ligase family, glutamate ligase domain JS278_02045 PF08245 Mur ligase middle domain JS278_02046 PF00905 Penicillin binding protein transpeptidase domain JS278_02046 PF03717 Penicillin-binding Protein dimerisation domain JS278_02048 PF01795 MraW methylase family JS278_02049 PF02381 MraZ protein, putative antitoxin-like JS278_02050 PF07726 ATPase family associated with various cellular activities (AAA) JS278_02050 PF17863 AAA lid domain JS278_02052 PF13559 Domain of unknown function (DUF4129) JS278_02052 PF11992 Domain of unknown function (DUF3488) JS278_02052 PF01841 Transglutaminase-like superfamily JS278_02054 PF01571 Aminomethyltransferase folate-binding domain JS278_02054 PF08669 Glycine cleavage T-protein C-terminal barrel domain JS278_02055 PF01597 Glycine cleavage H-protein JS278_02056 PF02347 Glycine cleavage system P-protein JS278_02057 PF07729 FCD domain JS278_02057 PF00392 Bacterial regulatory proteins, gntR family JS278_02058 PF01202 Shikimate kinase JS278_02059 PF02447 GntP family permease JS278_02060 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JS278_02060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JS278_02061 PF00011 Hsp20/alpha crystallin family JS278_02063 PF00005 ABC transporter JS278_02067 PF02219 Methylenetetrahydrofolate reductase JS278_02068 PF00348 Polyprenyl synthetase JS278_02069 PF02581 Thiamine monophosphate synthase JS278_02071 PF03793 PASTA domain JS278_02071 PF00069 Protein kinase domain JS278_02074 PF01474 Class-II DAHP synthetase family JS278_02075 PF00196 Bacterial regulatory proteins, luxR family JS278_02075 PF00072 Response regulator receiver domain JS278_02079 PF00480 ROK family JS278_02080 PF00877 NlpC/P60 family JS278_02080 PF01476 LysM domain JS278_02080 PF08239 Bacterial SH3 domain JS278_02081 PF01541 GIY-YIG catalytic domain JS278_02081 PF00929 Exonuclease JS278_02084 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JS278_02088 PF00591 Glycosyl transferase family, a/b domain JS278_02088 PF02885 Glycosyl transferase family, helical bundle domain JS278_02090 PF00510 Cytochrome c oxidase subunit III JS278_02091 PF00034 Cytochrome c JS278_02091 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JS278_02092 PF00355 Rieske [2Fe-2S] domain JS278_02093 PF13631 Cytochrome b(N-terminal)/b6/petB JS278_02095 PF00571 CBS domain JS278_02095 PF00478 IMP dehydrogenase / GMP reductase domain JS278_02096 PF12270 Cytochrome c oxidase subunit IV JS278_02097 PF00115 Cytochrome C and Quinol oxidase polypeptide I JS278_02098 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JS278_02099 PF01521 Iron-sulphur cluster biosynthesis JS278_02106 PF00364 Biotin-requiring enzyme JS278_02106 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JS278_02106 PF02817 e3 binding domain JS278_02107 PF03099 Biotin/lipoate A/B protein ligase family JS278_02108 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) JS278_02108 PF05425 Copper resistance protein D JS278_02109 PF00403 Heavy-metal-associated domain JS278_02111 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JS278_02111 PF04055 Radical SAM superfamily JS278_02113 PF16326 ABC transporter C-terminal domain JS278_02113 PF00005 ABC transporter JS278_02113 PF12848 ABC transporter JS278_02115 PF09335 SNARE associated Golgi protein JS278_02116 PF13439 Glycosyltransferase Family 4 JS278_02116 PF00534 Glycosyl transferases group 1 JS278_02119 PF03951 Glutamine synthetase, beta-Grasp domain JS278_02119 PF00120 Glutamine synthetase, catalytic domain JS278_02122 PF01784 NIF3 (NGG1p interacting factor 3) JS278_02124 PF08335 GlnD PII-uridylyltransferase JS278_02124 PF03710 Glutamate-ammonia ligase adenylyltransferase JS278_02126 PF00120 Glutamine synthetase, catalytic domain JS278_02126 PF03951 Glutamine synthetase, beta-Grasp domain JS278_02128 PF02687 FtsX-like permease family JS278_02128 PF00005 ABC transporter JS278_02128 PF12704 MacB-like periplasmic core domain JS278_02129 PF12704 MacB-like periplasmic core domain JS278_02129 PF02687 FtsX-like permease family JS278_02129 PF00005 ABC transporter JS278_02134 PF00196 Bacterial regulatory proteins, luxR family JS278_02134 PF00072 Response regulator receiver domain JS278_02135 PF00557 Metallopeptidase family M24 JS278_02136 PF01544 CorA-like Mg2+ transporter protein JS278_02139 PF02591 C4-type zinc ribbon domain JS278_02140 PF00324 Amino acid permease JS278_02142 PF00202 Aminotransferase class-III JS278_02144 PF05195 Aminopeptidase P, N-terminal domain JS278_02144 PF00557 Metallopeptidase family M24 JS278_02150 PF10609 NUBPL iron-transfer P-loop NTPase JS278_02150 PF01883 Iron-sulfur cluster assembly protein JS278_02151 PF02416 mttA/Hcf106 family JS278_02152 PF00701 Dihydrodipicolinate synthetase family JS278_02153 PF01596 O-methyltransferase JS278_02155 PF00483 Nucleotidyl transferase JS278_02156 PF00534 Glycosyl transferases group 1 JS278_02156 PF13439 Glycosyltransferase Family 4 JS278_02160 PF07687 Peptidase dimerisation domain JS278_02160 PF01546 Peptidase family M20/M25/M40 JS278_02161 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JS278_02161 PF14602 Hexapeptide repeat of succinyl-transferase JS278_02164 PF00155 Aminotransferase class I and II JS278_02165 PF00037 4Fe-4S binding domain JS278_02167 PF00144 Beta-lactamase JS278_02168 PF02233 NAD(P) transhydrogenase beta subunit JS278_02169 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JS278_02169 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JS278_02169 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JS278_02170 PF07690 Major Facilitator Superfamily JS278_02175 PF00456 Transketolase, thiamine diphosphate binding domain JS278_02175 PF02779 Transketolase, pyrimidine binding domain JS278_02175 PF02780 Transketolase, C-terminal domain JS278_02176 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JS278_02176 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JS278_02178 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JS278_02178 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JS278_02179 PF13344 Haloacid dehalogenase-like hydrolase JS278_02181 PF02502 Ribose/Galactose Isomerase JS278_02182 PF00455 DeoR C terminal sensor domain JS278_02182 PF08220 DeoR-like helix-turn-helix domain JS278_02183 PF00156 Phosphoribosyl transferase domain JS278_02184 PF02734 DAK2 domain JS278_02184 PF02733 Dak1 domain JS278_02185 PF00107 Zinc-binding dehydrogenase JS278_02185 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02186 PF00171 Aldehyde dehydrogenase family JS278_02190 PF00005 ABC transporter JS278_02191 PF00950 ABC 3 transport family JS278_02197 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02198 PF00005 ABC transporter JS278_02203 PF02310 B12 binding domain JS278_02203 PF01642 Methylmalonyl-CoA mutase JS278_02204 PF01642 Methylmalonyl-CoA mutase JS278_02206 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JS278_02206 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JS278_02206 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JS278_02207 PF00128 Alpha amylase, catalytic domain JS278_02208 PF00324 Amino acid permease JS278_02209 PF08534 Redoxin JS278_02210 PF00248 Aldo/keto reductase family JS278_02211 PF07995 Glucose / Sorbosone dehydrogenase JS278_02212 PF01842 ACT domain JS278_02219 PF00083 Sugar (and other) transporter JS278_02220 PF00083 Sugar (and other) transporter JS278_02221 PF02801 Beta-ketoacyl synthase, C-terminal domain JS278_02221 PF00109 Beta-ketoacyl synthase, N-terminal domain JS278_02221 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02221 PF16197 Ketoacyl-synthetase C-terminal extension JS278_02221 PF14765 Polyketide synthase dehydratase JS278_02221 PF08659 KR domain JS278_02221 PF00698 Acyl transferase domain JS278_02221 PF00550 Phosphopantetheine attachment site JS278_02222 PF01261 Xylose isomerase-like TIM barrel JS278_02223 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_02223 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_02224 PF00356 Bacterial regulatory proteins, lacI family JS278_02225 PF00196 Bacterial regulatory proteins, luxR family JS278_02225 PF00072 Response regulator receiver domain JS278_02228 PF02805 Metal binding domain of Ada JS278_02228 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JS278_02228 PF12833 Helix-turn-helix domain JS278_02228 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JS278_02232 PF00300 Histidine phosphatase superfamily (branch 1) JS278_02233 PF00005 ABC transporter JS278_02233 PF00664 ABC transporter transmembrane region JS278_02236 PF00144 Beta-lactamase JS278_02236 PF11954 Domain of unknown function (DUF3471) JS278_02237 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JS278_02241 PF03747 ADP-ribosylglycohydrolase JS278_02247 PF01850 PIN domain JS278_02254 PF01381 Helix-turn-helix JS278_02256 PF01381 Helix-turn-helix JS278_02258 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JS278_02259 PF01926 50S ribosome-binding GTPase JS278_02259 PF06071 Protein of unknown function (DUF933) JS278_02262 PF12704 MacB-like periplasmic core domain JS278_02262 PF00005 ABC transporter JS278_02262 PF02687 FtsX-like permease family JS278_02263 PF02127 Aminopeptidase I zinc metalloprotease (M18) JS278_02264 PF02646 RmuC family JS278_02265 PF02401 LytB protein JS278_02266 PF13742 OB-fold nucleic acid binding domain JS278_02266 PF02601 Exonuclease VII, large subunit JS278_02267 PF02609 Exonuclease VII small subunit JS278_02269 PF13638 PIN domain JS278_02269 PF02562 PhoH-like protein JS278_02270 PF03006 Haemolysin-III related JS278_02271 PF01255 Putative undecaprenyl diphosphate synthase JS278_02272 PF03190 Protein of unknown function, DUF255 JS278_02276 PF03449 Transcription elongation factor, N-terminal JS278_02276 PF01272 Transcription elongation factor, GreA/GreB, C-term JS278_02278 PF01594 AI-2E family transporter JS278_02279 PF03167 Uracil DNA glycosylase superfamily JS278_02280 PF01625 Peptide methionine sulfoxide reductase JS278_02287 PF00579 tRNA synthetases class I (W and Y) JS278_02288 PF02863 Arginine repressor, C-terminal domain JS278_02288 PF01316 Arginine repressor, DNA binding domain JS278_02289 PF02909 Tetracyclin repressor-like, C-terminal domain JS278_02289 PF00440 Bacterial regulatory proteins, tetR family JS278_02290 PF06968 Biotin and Thiamin Synthesis associated domain JS278_02290 PF04055 Radical SAM superfamily JS278_02291 PF03484 tRNA synthetase B5 domain JS278_02291 PF03483 B3/4 domain JS278_02291 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JS278_02291 PF01588 Putative tRNA binding domain JS278_02291 PF03147 Ferredoxin-fold anticodon binding domain JS278_02292 PF01409 tRNA synthetases class II core domain (F) JS278_02292 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JS278_02294 PF00588 SpoU rRNA Methylase family JS278_02294 PF12105 SpoU, rRNA methylase, C-terminal JS278_02295 PF00453 Ribosomal protein L20 JS278_02296 PF01632 Ribosomal protein L35 JS278_02297 PF00707 Translation initiation factor IF-3, C-terminal domain JS278_02297 PF05198 Translation initiation factor IF-3, N-terminal domain JS278_02302 PF00293 NUDIX domain JS278_02305 PF13520 Amino acid permease JS278_02310 PF04261 Dyp-type peroxidase family JS278_02312 PF00196 Bacterial regulatory proteins, luxR family JS278_02312 PF13185 GAF domain JS278_02316 PF02541 Ppx/GppA phosphatase family JS278_02319 PF03952 Enolase, N-terminal domain JS278_02319 PF00113 Enolase, C-terminal TIM barrel domain JS278_02320 PF03819 MazG nucleotide pyrophosphohydrolase domain JS278_02322 PF00271 Helicase conserved C-terminal domain JS278_02322 PF03461 TRCF domain JS278_02322 PF17757 UvrB interaction domain JS278_02322 PF00270 DEAD/DEAH box helicase JS278_02322 PF02559 CarD-like/TRCF domain JS278_02324 PF01695 IstB-like ATP binding protein JS278_02325 PF00665 Integrase core domain JS278_02326 PF01195 Peptidyl-tRNA hydrolase JS278_02327 PF14693 Ribosomal protein TL5, C-terminal domain JS278_02327 PF01386 Ribosomal L25p family JS278_02328 PF14572 Phosphoribosyl synthetase-associated domain JS278_02328 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JS278_02329 PF00132 Bacterial transferase hexapeptide (six repeats) JS278_02329 PF12804 MobA-like NTP transferase domain JS278_02332 PF01047 MarR family JS278_02333 PF08544 GHMP kinases C terminal JS278_02333 PF00288 GHMP kinases N terminal domain JS278_02334 PF00398 Ribosomal RNA adenine dimethylase JS278_02335 PF01026 TatD related DNase JS278_02336 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_02337 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JS278_02337 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase JS278_02338 PF00860 Permease family JS278_02339 PF00069 Protein kinase domain JS278_02340 PF02682 Carboxyltransferase domain, subdomain C and D JS278_02341 PF03746 LamB/YcsF family JS278_02343 PF05532 CsbD-like JS278_02346 PF07859 alpha/beta hydrolase fold JS278_02347 PF13185 GAF domain JS278_02347 PF07730 Histidine kinase JS278_02347 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_02348 PF01339 CheB methylesterase JS278_02348 PF00072 Response regulator receiver domain JS278_02351 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JS278_02351 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JS278_02353 PF01965 DJ-1/PfpI family JS278_02355 PF09278 MerR, DNA binding JS278_02355 PF00376 MerR family regulatory protein JS278_02361 PF00890 FAD binding domain JS278_02365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_02365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_02369 PF00176 SNF2 family N-terminal domain JS278_02369 PF00271 Helicase conserved C-terminal domain JS278_02369 PF12419 SNF2 Helicase protein JS278_02372 PF00155 Aminotransferase class I and II JS278_02378 PF13302 Acetyltransferase (GNAT) domain JS278_02380 PF01812 5-formyltetrahydrofolate cyclo-ligase family JS278_02383 PF01741 Large-conductance mechanosensitive channel, MscL JS278_02387 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_02387 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_02388 PF00083 Sugar (and other) transporter JS278_02389 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_02389 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_02390 PF00356 Bacterial regulatory proteins, lacI family JS278_02391 PF00083 Sugar (and other) transporter JS278_02392 PF00356 Bacterial regulatory proteins, lacI family JS278_02394 PF00205 Thiamine pyrophosphate enzyme, central domain JS278_02394 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JS278_02394 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JS278_02395 PF04962 KduI/IolB family JS278_02397 PF00294 pfkB family carbohydrate kinase JS278_02398 PF00923 Transaldolase/Fructose-6-phosphate aldolase JS278_02399 PF00085 Thioredoxin JS278_02400 PF08241 Methyltransferase domain JS278_02401 PF18357 Diphteria toxin repressor SH3 domain JS278_02401 PF02742 Iron dependent repressor, metal binding and dimerisation domain JS278_02401 PF01325 Iron dependent repressor, N-terminal DNA binding domain JS278_02402 PF01979 Amidohydrolase family JS278_02403 PF00266 Aminotransferase class-V JS278_02406 PF00860 Permease family JS278_02410 PF00313 'Cold-shock' DNA-binding domain JS278_02411 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JS278_02416 PF03932 CutC family JS278_02419 PF04972 BON domain JS278_02419 PF00691 OmpA family JS278_02422 PF00118 TCP-1/cpn60 chaperonin family JS278_02424 PF01238 Phosphomannose isomerase type I JS278_02425 PF02664 S-Ribosylhomocysteinase (LuxS) JS278_02429 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JS278_02430 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JS278_02434 PF02654 Cobalamin-5-phosphate synthase JS278_02435 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JS278_02436 PF02277 Phosphoribosyltransferase JS278_02437 PF02571 Precorrin-6x reductase CbiJ/CobK JS278_02438 PF10414 Sirohaem synthase dimerisation region JS278_02438 PF14824 Sirohaem biosynthesis protein central JS278_02438 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_02439 PF07685 CobB/CobQ-like glutamine amidotransferase domain JS278_02439 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JS278_02440 PF12557 Cob(I)alamin adenosyltransferase N terminal JS278_02440 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JS278_02441 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_02442 PF00005 ABC transporter JS278_02443 PF02361 Cobalt transport protein JS278_02444 PF02553 Cobalt transport protein component CbiN JS278_02445 PF01891 Cobalt uptake substrate-specific transmembrane region JS278_02446 PF02570 Precorrin-8X methylmutase JS278_02448 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_02448 PF14824 Sirohaem biosynthesis protein central JS278_02448 PF10414 Sirohaem synthase dimerisation region JS278_02449 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JS278_02449 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_02450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_02451 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JS278_02452 PF07685 CobB/CobQ-like glutamine amidotransferase domain JS278_02452 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JS278_02453 PF17113 Regulatory signalling modulator protein AmpE JS278_02453 PF03186 CobD/Cbib protein JS278_02455 PF00072 Response regulator receiver domain JS278_02455 PF00196 Bacterial regulatory proteins, luxR family JS278_02456 PF00672 HAMP domain JS278_02456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_02456 PF07730 Histidine kinase JS278_02457 PF00005 ABC transporter JS278_02461 PF00300 Histidine phosphatase superfamily (branch 1) JS278_02462 PF00809 Pterin binding enzyme JS278_02463 PF00072 Response regulator receiver domain JS278_02463 PF00196 Bacterial regulatory proteins, luxR family JS278_02464 PF07730 Histidine kinase JS278_02466 PF00005 ABC transporter JS278_02467 PF01661 Macro domain JS278_02469 PF00155 Aminotransferase class I and II JS278_02470 PF00107 Zinc-binding dehydrogenase JS278_02470 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02471 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02472 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02474 PF00480 ROK family JS278_02475 PF03315 Serine dehydratase beta chain JS278_02475 PF03313 Serine dehydratase alpha chain JS278_02478 PF07690 Major Facilitator Superfamily JS278_02479 PF03459 TOBE domain JS278_02479 PF17912 MalK OB fold domain JS278_02479 PF00005 ABC transporter JS278_02482 PF01053 Cys/Met metabolism PLP-dependent enzyme JS278_02485 PF01406 tRNA synthetases class I (C) catalytic domain JS278_02485 PF09190 DALR domain JS278_02486 PF00588 SpoU rRNA Methylase family JS278_02486 PF08032 RNA 2'-O ribose methyltransferase substrate binding JS278_02487 PF08241 Methyltransferase domain JS278_02488 PF07690 Major Facilitator Superfamily JS278_02489 PF00464 Serine hydroxymethyltransferase JS278_02495 PF02542 YgbB family JS278_02496 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JS278_02499 PF01116 Fructose-bisphosphate aldolase class-II JS278_02501 PF01842 ACT domain JS278_02501 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JS278_02501 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JS278_02502 PF00107 Zinc-binding dehydrogenase JS278_02502 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02506 PF07663 Sorbitol phosphotransferase enzyme II C-terminus JS278_02506 PF03612 Sorbitol phosphotransferase enzyme II N-terminus JS278_02508 PF04198 Putative sugar-binding domain JS278_02509 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JS278_02509 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JS278_02512 PF02559 CarD-like/TRCF domain JS278_02514 PF00072 Response regulator receiver domain JS278_02514 PF00486 Transcriptional regulatory protein, C terminal JS278_02515 PF00512 His Kinase A (phospho-acceptor) domain JS278_02515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_02516 PF01895 PhoU domain JS278_02517 PF00300 Histidine phosphatase superfamily (branch 1) JS278_02518 PF00381 PTS HPr component phosphorylation site JS278_02519 PF02896 PEP-utilising enzyme, TIM barrel domain JS278_02519 PF05524 PEP-utilising enzyme, N-terminal JS278_02519 PF00391 PEP-utilising enzyme, mobile domain JS278_02520 PF00106 short chain dehydrogenase JS278_02521 PF00364 Biotin-requiring enzyme JS278_02522 PF01039 Carboxyl transferase domain JS278_02523 PF01039 Carboxyl transferase domain JS278_02524 PF00682 HMGL-like JS278_02524 PF02436 Conserved carboxylase domain JS278_02525 PF01116 Fructose-bisphosphate aldolase class-II JS278_02528 PF09335 SNARE associated Golgi protein JS278_02530 PF08453 Peptidase family M9 N-terminal JS278_02530 PF01752 Collagenase JS278_02532 PF13614 AAA domain JS278_02533 PF01943 Polysaccharide biosynthesis protein JS278_02538 PF02585 GlcNAc-PI de-N-acetylase JS278_02542 PF01467 Cytidylyltransferase-like JS278_02542 PF00294 pfkB family carbohydrate kinase JS278_02543 PF04011 LemA family JS278_02547 PF00155 Aminotransferase class I and II JS278_02550 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02551 PF00571 CBS domain JS278_02551 PF00005 ABC transporter JS278_02557 PF02384 N-6 DNA Methylase JS278_02559 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JS278_02559 PF11867 Domain of unknown function (DUF3387) JS278_02559 PF18766 SWI2/SNF2 ATPase JS278_02565 PF00356 Bacterial regulatory proteins, lacI family JS278_02566 PF13416 Bacterial extracellular solute-binding protein JS278_02567 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02568 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02571 PF05368 NmrA-like family JS278_02572 PF17926 Tetracyclin repressor-like, C-terminal domain JS278_02572 PF00440 Bacterial regulatory proteins, tetR family JS278_02575 PF00011 Hsp20/alpha crystallin family JS278_02577 PF11975 Family 4 glycosyl hydrolase C-terminal domain JS278_02577 PF02056 Family 4 glycosyl hydrolase JS278_02578 PF00455 DeoR C terminal sensor domain JS278_02578 PF08220 DeoR-like helix-turn-helix domain JS278_02579 PF00294 pfkB family carbohydrate kinase JS278_02582 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02583 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02584 PF02861 Clp amino terminal domain, pathogenicity island component JS278_02584 PF17871 AAA lid domain JS278_02584 PF07724 AAA domain (Cdc48 subfamily) JS278_02584 PF10431 C-terminal, D2-small domain, of ClpB protein JS278_02584 PF00004 ATPase family associated with various cellular activities (AAA) JS278_02586 PF00274 Fructose-bisphosphate aldolase class-I JS278_02588 PF01566 Natural resistance-associated macrophage protein JS278_02588 PF03358 NADPH-dependent FMN reductase JS278_02591 PF07730 Histidine kinase JS278_02592 PF00072 Response regulator receiver domain JS278_02592 PF00196 Bacterial regulatory proteins, luxR family JS278_02595 PF00005 ABC transporter JS278_02595 PF02687 FtsX-like permease family JS278_02595 PF12704 MacB-like periplasmic core domain JS278_02596 PF02687 FtsX-like permease family JS278_02596 PF12704 MacB-like periplasmic core domain JS278_02596 PF00005 ABC transporter JS278_02597 PF00324 Amino acid permease JS278_02598 PF02080 TrkA-C domain JS278_02598 PF06826 Predicted Permease Membrane Region JS278_02599 PF03306 Alpha-acetolactate decarboxylase JS278_02600 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02600 PF00107 Zinc-binding dehydrogenase JS278_02601 PF13411 MerR HTH family regulatory protein JS278_02602 PF01556 DnaJ C terminal domain JS278_02602 PF00226 DnaJ domain JS278_02602 PF00684 DnaJ central domain JS278_02603 PF01025 GrpE JS278_02604 PF00012 Hsp70 protein JS278_02605 PF00571 CBS domain JS278_02605 PF00005 ABC transporter JS278_02606 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JS278_02606 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_02608 PF02566 OsmC-like protein JS278_02610 PF01494 FAD binding domain JS278_02612 PF01638 HxlR-like helix-turn-helix JS278_02613 PF00106 short chain dehydrogenase JS278_02615 PF01384 Phosphate transporter family JS278_02616 PF00486 Transcriptional regulatory protein, C terminal JS278_02616 PF00072 Response regulator receiver domain JS278_02617 PF00672 HAMP domain JS278_02617 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_02617 PF00512 His Kinase A (phospho-acceptor) domain JS278_02618 PF01791 DeoC/LacD family aldolase JS278_02621 PF02896 PEP-utilising enzyme, TIM barrel domain JS278_02621 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JS278_02621 PF00391 PEP-utilising enzyme, mobile domain JS278_02623 PF03618 Kinase/pyrophosphorylase JS278_02624 PF05175 Methyltransferase small domain JS278_02626 PF01263 Aldose 1-epimerase JS278_02627 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JS278_02627 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JS278_02630 PF00005 ABC transporter JS278_02633 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JS278_02633 PF00005 ABC transporter JS278_02634 PF01425 Amidase JS278_02637 PF14748 Pyrroline-5-carboxylate reductase dimerisation JS278_02637 PF03807 NADP oxidoreductase coenzyme F420-dependent JS278_02638 PF10415 Fumarase C C-terminus JS278_02638 PF00206 Lyase JS278_02639 PF01979 Amidohydrolase family JS278_02640 PF04616 Glycosyl hydrolases family 43 JS278_02644 PF07690 Major Facilitator Superfamily JS278_02647 PF00248 Aldo/keto reductase family JS278_02653 PF00480 ROK family JS278_02654 PF05746 DALR anticodon binding domain JS278_02654 PF00750 tRNA synthetases class I (R) JS278_02654 PF03485 Arginyl tRNA synthetase N terminal domain JS278_02655 PF00248 Aldo/keto reductase family JS278_02656 PF07690 Major Facilitator Superfamily JS278_02658 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JS278_02659 PF02698 DUF218 domain JS278_02660 PF00342 Phosphoglucose isomerase JS278_02662 PF08148 DSHCT (NUC185) domain JS278_02662 PF00270 DEAD/DEAH box helicase JS278_02662 PF00271 Helicase conserved C-terminal domain JS278_02664 PF01161 Phosphatidylethanolamine-binding protein JS278_02668 PF00248 Aldo/keto reductase family JS278_02670 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JS278_02671 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JS278_02673 PF03952 Enolase, N-terminal domain JS278_02673 PF00113 Enolase, C-terminal TIM barrel domain JS278_02674 PF02040 Arsenical pump membrane protein JS278_02677 PF07690 Major Facilitator Superfamily JS278_02678 PF03741 Integral membrane protein TerC family JS278_02679 PF01522 Polysaccharide deacetylase JS278_02679 PF00457 Glycosyl hydrolases family 11 JS278_02679 PF03422 Carbohydrate binding module (family 6) JS278_02680 PF03023 Lipid II flippase MurJ JS278_02681 PF00696 Amino acid kinase family JS278_02681 PF01842 ACT domain JS278_02681 PF13840 ACT domain JS278_02683 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_02683 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_02686 PF00133 tRNA synthetases class I (I, L, M and V) JS278_02686 PF08264 Anticodon-binding domain of tRNA JS278_02688 PF01850 PIN domain JS278_02692 PF01301 Glycosyl hydrolases family 35 JS278_02695 PF01910 Thiamine-binding protein JS278_02696 PF02132 RecR protein JS278_02696 PF13662 Toprim domain JS278_02697 PF02575 YbaB/EbfC DNA-binding family JS278_02698 PF12169 DNA polymerase III subunits gamma and tau domain III JS278_02705 PF00005 ABC transporter JS278_02705 PF13732 Domain of unknown function (DUF4162) JS278_02707 PF00324 Amino acid permease JS278_02709 PF03109 ABC1 family JS278_02710 PF03551 Transcriptional regulator PadR-like family JS278_02711 PF07690 Major Facilitator Superfamily JS278_02711 PF00083 Sugar (and other) transporter JS278_02712 PF00128 Alpha amylase, catalytic domain JS278_02716 PF00128 Alpha amylase, catalytic domain JS278_02716 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JS278_02717 PF12728 Helix-turn-helix domain JS278_02724 PF00534 Glycosyl transferases group 1 JS278_02724 PF00862 Sucrose synthase JS278_02727 PF13614 AAA domain JS278_02729 PF02397 Bacterial sugar transferase JS278_02731 PF03816 Cell envelope-related transcriptional attenuator domain JS278_02732 PF01451 Low molecular weight phosphotyrosine protein phosphatase JS278_02734 PF02397 Bacterial sugar transferase JS278_02735 PF00107 Zinc-binding dehydrogenase JS278_02735 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02737 PF00483 Nucleotidyl transferase JS278_02738 PF16363 GDP-mannose 4,6 dehydratase JS278_02739 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JS278_02740 PF12401 Protein of unknown function (DUF2662) JS278_02740 PF00498 FHA domain JS278_02741 PF16697 Inner membrane component of T3SS, cytoplasmic domain JS278_02743 PF01098 Cell cycle protein JS278_02744 PF00905 Penicillin binding protein transpeptidase domain JS278_02745 PF00069 Protein kinase domain JS278_02745 PF03793 PASTA domain JS278_02746 PF00117 Glutamine amidotransferase class-I JS278_02748 PF06781 Cell division protein CrgA JS278_02749 PF01336 OB-fold nucleic acid binding domain JS278_02749 PF00152 tRNA synthetases class II (D, K and N) JS278_02750 PF01906 Putative heavy-metal-binding JS278_02751 PF01177 Asp/Glu/Hydantoin racemase JS278_02752 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JS278_02753 PF01979 Amidohydrolase family JS278_02754 PF00266 Aminotransferase class-V JS278_02755 PF01546 Peptidase family M20/M25/M40 JS278_02755 PF07687 Peptidase dimerisation domain JS278_02758 PF00392 Bacterial regulatory proteins, gntR family JS278_02758 PF07729 FCD domain JS278_02759 PF00549 CoA-ligase JS278_02759 PF02629 CoA binding domain JS278_02760 PF06545 Protein of unknown function (DUF1116) JS278_02762 PF00696 Amino acid kinase family JS278_02765 PF13419 Haloacid dehalogenase-like hydrolase JS278_02766 PF00440 Bacterial regulatory proteins, tetR family JS278_02767 PF00664 ABC transporter transmembrane region JS278_02767 PF00005 ABC transporter JS278_02768 PF00005 ABC transporter JS278_02768 PF00664 ABC transporter transmembrane region JS278_02769 PF00356 Bacterial regulatory proteins, lacI family JS278_02770 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02771 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02772 PF01547 Bacterial extracellular solute-binding protein JS278_02773 PF01301 Glycosyl hydrolases family 35 JS278_02774 PF00465 Iron-containing alcohol dehydrogenase JS278_02775 PF07690 Major Facilitator Superfamily JS278_02783 PF03965 Penicillinase repressor JS278_02784 PF01654 Cytochrome bd terminal oxidase subunit I JS278_02785 PF02322 Cytochrome bd terminal oxidase subunit II JS278_02786 PF00664 ABC transporter transmembrane region JS278_02786 PF00005 ABC transporter JS278_02787 PF00664 ABC transporter transmembrane region JS278_02787 PF00005 ABC transporter JS278_02789 PF02589 LUD domain JS278_02790 PF13183 4Fe-4S dicluster domain JS278_02790 PF11870 Domain of unknown function (DUF3390) JS278_02790 PF02589 LUD domain JS278_02791 PF02754 Cysteine-rich domain JS278_02792 PF02652 L-lactate permease JS278_02793 PF00392 Bacterial regulatory proteins, gntR family JS278_02793 PF07729 FCD domain JS278_02794 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JS278_02794 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_02795 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JS278_02795 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JS278_02795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JS278_02795 PF10371 Domain of unknown function JS278_02795 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JS278_02796 PF01180 Dihydroorotate dehydrogenase JS278_02798 PF03330 Lytic transglycolase JS278_02799 PF00403 Heavy-metal-associated domain JS278_02801 PF02583 Metal-sensitive transcriptional repressor JS278_02802 PF03796 DnaB-like helicase C terminal domain JS278_02802 PF00772 DnaB-like helicase N terminal domain JS278_02803 PF13462 Thioredoxin JS278_02803 PF06965 Na+/H+ antiporter 1 JS278_02808 PF07690 Major Facilitator Superfamily JS278_02809 PF00085 Thioredoxin JS278_02811 PF00255 Glutathione peroxidase JS278_02812 PF01047 MarR family JS278_02813 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02813 PF00107 Zinc-binding dehydrogenase JS278_02816 PF02245 Methylpurine-DNA glycosylase (MPG) JS278_02818 PF04408 Helicase associated domain (HA2) JS278_02818 PF00270 DEAD/DEAH box helicase JS278_02818 PF08482 ATP-dependent helicase C-terminal JS278_02818 PF00271 Helicase conserved C-terminal domain JS278_02819 PF00293 NUDIX domain JS278_02819 PF13344 Haloacid dehalogenase-like hydrolase JS278_02820 PF07992 Pyridine nucleotide-disulphide oxidoreductase JS278_02821 PF00581 Rhodanese-like domain JS278_02829 PF00535 Glycosyl transferase family 2 JS278_02831 PF02350 UDP-N-acetylglucosamine 2-epimerase JS278_02834 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JS278_02834 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JS278_02834 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JS278_02835 PF00005 ABC transporter JS278_02836 PF00497 Bacterial extracellular solute-binding proteins, family 3 JS278_02837 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02838 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02839 PF00455 DeoR C terminal sensor domain JS278_02839 PF08220 DeoR-like helix-turn-helix domain JS278_02842 PF00294 pfkB family carbohydrate kinase JS278_02843 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JS278_02843 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JS278_02848 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_02848 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_02849 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JS278_02850 PF12804 MobA-like NTP transferase domain JS278_02850 PF00132 Bacterial transferase hexapeptide (six repeats) JS278_02850 PF14602 Hexapeptide repeat of succinyl-transferase JS278_02852 PF13439 Glycosyltransferase Family 4 JS278_02852 PF00534 Glycosyl transferases group 1 JS278_02853 PF13614 AAA domain JS278_02858 PF00534 Glycosyl transferases group 1 JS278_02858 PF13439 Glycosyltransferase Family 4 JS278_02859 PF00534 Glycosyl transferases group 1 JS278_02859 PF13439 Glycosyltransferase Family 4 JS278_02862 PF00535 Glycosyl transferase family 2 JS278_02866 PF00905 Penicillin binding protein transpeptidase domain JS278_02866 PF00912 Transglycosylase JS278_02871 PF13683 Integrase core domain JS278_02871 PF13276 HTH-like domain JS278_02872 PF01527 Transposase JS278_02874 PF00440 Bacterial regulatory proteins, tetR family JS278_02876 PF00107 Zinc-binding dehydrogenase JS278_02876 PF16884 N-terminal domain of oxidoreductase JS278_02878 PF13276 HTH-like domain JS278_02878 PF13333 Integrase core domain JS278_02878 PF00665 Integrase core domain JS278_02880 PF01527 Transposase JS278_02881 PF00665 Integrase core domain JS278_02881 PF13276 HTH-like domain JS278_02884 PF13744 Helix-turn-helix domain JS278_02885 PF00872 Transposase, Mutator family JS278_02886 PF00440 Bacterial regulatory proteins, tetR family JS278_02888 PF04237 YjbR JS278_02889 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02889 PF00107 Zinc-binding dehydrogenase JS278_02898 PF00743 Flavin-binding monooxygenase-like JS278_02899 PF02720 Domain of unknown function (DUF222) JS278_02901 PF00583 Acetyltransferase (GNAT) family JS278_02903 PF01595 Cyclin M transmembrane N-terminal domain JS278_02903 PF03471 Transporter associated domain JS278_02903 PF00571 CBS domain JS278_02904 PF00571 CBS domain JS278_02904 PF01595 Cyclin M transmembrane N-terminal domain JS278_02909 PF00456 Transketolase, thiamine diphosphate binding domain JS278_02909 PF02780 Transketolase, C-terminal domain JS278_02909 PF02779 Transketolase, pyrimidine binding domain JS278_02913 PF00107 Zinc-binding dehydrogenase JS278_02913 PF08240 Alcohol dehydrogenase GroES-like domain JS278_02917 PF00005 ABC transporter JS278_02920 PF00206 Lyase JS278_02920 PF10397 Adenylosuccinate lyase C-terminus JS278_02921 PF03606 C4-dicarboxylate anaerobic carrier JS278_02924 PF00004 ATPase family associated with various cellular activities (AAA) JS278_02924 PF12002 MgsA AAA+ ATPase C terminal JS278_02924 PF16193 AAA C-terminal domain JS278_02928 PF00356 Bacterial regulatory proteins, lacI family JS278_02929 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_02929 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_02930 PF00083 Sugar (and other) transporter JS278_02931 PF01261 Xylose isomerase-like TIM barrel JS278_02932 PF00356 Bacterial regulatory proteins, lacI family JS278_02933 PF00356 Bacterial regulatory proteins, lacI family JS278_02935 PF02653 Branched-chain amino acid transport system / permease component JS278_02937 PF00665 Integrase core domain JS278_02937 PF13276 HTH-like domain JS278_02938 PF01527 Transposase JS278_02947 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02948 PF00528 Binding-protein-dependent transport system inner membrane component JS278_02950 PF13181 Tetratricopeptide repeat JS278_02950 PF17128 Domain of unknown function (DUF5107) JS278_02951 PF00155 Aminotransferase class I and II JS278_02953 PF09370 Phosphoenolpyruvate hydrolase-like JS278_02955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_02955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_02956 PF01238 Phosphomannose isomerase type I JS278_02957 PF07690 Major Facilitator Superfamily JS278_02958 PF00795 Carbon-nitrogen hydrolase JS278_02960 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JS278_02960 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JS278_02965 PF07687 Peptidase dimerisation domain JS278_02965 PF01546 Peptidase family M20/M25/M40 JS278_02966 PF00561 alpha/beta hydrolase fold JS278_02968 PF13305 Tetracyclin repressor-like, C-terminal domain JS278_02968 PF00440 Bacterial regulatory proteins, tetR family JS278_02969 PF16363 GDP-mannose 4,6 dehydratase JS278_02971 PF17866 AAA lid domain JS278_02971 PF00004 ATPase family associated with various cellular activities (AAA) JS278_02973 PF13744 Helix-turn-helix domain JS278_02974 PF05973 Phage derived protein Gp49-like (DUF891) JS278_02978 PF00271 Helicase conserved C-terminal domain JS278_02978 PF00270 DEAD/DEAH box helicase JS278_02978 PF08494 DEAD/H associated JS278_02980 PF00271 Helicase conserved C-terminal domain JS278_02980 PF00176 SNF2 family N-terminal domain JS278_02991 PF00356 Bacterial regulatory proteins, lacI family JS278_02992 PF16875 Glycosyl hydrolase family 36 N-terminal domain JS278_02992 PF16874 Glycosyl hydrolase family 36 C-terminal domain JS278_02996 PF03009 Glycerophosphoryl diester phosphodiesterase family JS278_02997 PF00356 Bacterial regulatory proteins, lacI family JS278_02998 PF16875 Glycosyl hydrolase family 36 N-terminal domain JS278_02998 PF16874 Glycosyl hydrolase family 36 C-terminal domain JS278_02999 PF02308 MgtC family JS278_03000 PF00248 Aldo/keto reductase family JS278_03001 PF03577 Peptidase family C69 JS278_03006 PF00356 Bacterial regulatory proteins, lacI family JS278_03007 PF13407 Periplasmic binding protein domain JS278_03008 PF00005 ABC transporter JS278_03009 PF02653 Branched-chain amino acid transport system / permease component JS278_03010 PF02653 Branched-chain amino acid transport system / permease component JS278_03013 PF00083 Sugar (and other) transporter JS278_03015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_03015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_03016 PF00356 Bacterial regulatory proteins, lacI family JS278_03017 PF08450 SMP-30/Gluconolactonase/LRE-like region JS278_03018 PF02581 Thiamine monophosphate synthase JS278_03019 PF08543 Phosphomethylpyrimidine kinase JS278_03019 PF03070 TENA/THI-4/PQQC family JS278_03019 PF02581 Thiamine monophosphate synthase JS278_03020 PF17191 RecG wedge domain JS278_03020 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JS278_03020 PF00270 DEAD/DEAH box helicase JS278_03022 PF00199 Catalase JS278_03022 PF06628 Catalase-related immune-responsive JS278_03023 PF01967 MoaC family JS278_03023 PF00994 Probable molybdopterin binding domain JS278_03024 PF01967 MoaC family JS278_03025 PF00994 Probable molybdopterin binding domain JS278_03025 PF03454 MoeA C-terminal region (domain IV) JS278_03025 PF03453 MoeA N-terminal region (domain I and II) JS278_03027 PF02391 MoaE protein JS278_03029 PF06463 Molybdenum Cofactor Synthesis C JS278_03029 PF04055 Radical SAM superfamily JS278_03031 PF00384 Molybdopterin oxidoreductase JS278_03031 PF02613 Nitrate reductase delta subunit JS278_03031 PF02665 Nitrate reductase gamma subunit JS278_03032 PF00384 Molybdopterin oxidoreductase JS278_03032 PF02665 Nitrate reductase gamma subunit JS278_03032 PF02613 Nitrate reductase delta subunit JS278_03033 PF13247 4Fe-4S dicluster domain JS278_03033 PF14711 Respiratory nitrate reductase beta C-terminal JS278_03034 PF00384 Molybdopterin oxidoreductase JS278_03034 PF01568 Molydopterin dinucleotide binding domain JS278_03035 PF07690 Major Facilitator Superfamily JS278_03036 PF01381 Helix-turn-helix JS278_03037 PF00067 Cytochrome P450 JS278_03038 PF01613 Flavin reductase like domain JS278_03041 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JS278_03047 PF03459 TOBE domain JS278_03047 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JS278_03049 PF00005 ABC transporter JS278_03049 PF03459 TOBE domain JS278_03051 PF00528 Binding-protein-dependent transport system inner membrane component JS278_03053 PF00005 ABC transporter JS278_03053 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JS278_03055 PF13409 Glutathione S-transferase, N-terminal domain JS278_03057 PF00583 Acetyltransferase (GNAT) family JS278_03060 PF00210 Ferritin-like domain JS278_03061 PF00027 Cyclic nucleotide-binding domain JS278_03061 PF13545 Crp-like helix-turn-helix domain JS278_03065 PF04343 Protein of unknown function, DUF488 JS278_03069 PF03949 Malic enzyme, NAD binding domain JS278_03069 PF00390 Malic enzyme, N-terminal domain JS278_03070 PF00365 Phosphofructokinase JS278_03073 PF00171 Aldehyde dehydrogenase family JS278_03074 PF00005 ABC transporter JS278_03079 PF01527 Transposase JS278_03080 PF13276 HTH-like domain JS278_03080 PF00665 Integrase core domain JS278_03083 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JS278_03083 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JS278_03083 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JS278_03083 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JS278_03084 PF13607 Succinyl-CoA ligase like flavodoxin domain JS278_03084 PF13380 CoA binding domain JS278_03084 PF00583 Acetyltransferase (GNAT) family JS278_03085 PF00708 Acylphosphatase JS278_03089 PF03949 Malic enzyme, NAD binding domain JS278_03089 PF00390 Malic enzyme, N-terminal domain JS278_03090 PF06965 Na+/H+ antiporter 1 JS278_03091 PF07690 Major Facilitator Superfamily JS278_03094 PF07690 Major Facilitator Superfamily JS278_03096 PF00196 Bacterial regulatory proteins, luxR family JS278_03096 PF00072 Response regulator receiver domain JS278_03100 PF13439 Glycosyltransferase Family 4 JS278_03100 PF00534 Glycosyl transferases group 1 JS278_03101 PF00849 RNA pseudouridylate synthase JS278_03102 PF00085 Thioredoxin JS278_03105 PF13492 GAF domain JS278_03105 PF07730 Histidine kinase JS278_03105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JS278_03112 PF08240 Alcohol dehydrogenase GroES-like domain JS278_03112 PF00107 Zinc-binding dehydrogenase JS278_03113 PF13936 Helix-turn-helix domain JS278_03113 PF00665 Integrase core domain JS278_03114 PF01261 Xylose isomerase-like TIM barrel JS278_03115 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_03115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_03116 PF00356 Bacterial regulatory proteins, lacI family JS278_03119 PF03466 LysR substrate binding domain JS278_03119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JS278_03120 PF07690 Major Facilitator Superfamily JS278_03121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JS278_03121 PF03466 LysR substrate binding domain JS278_03122 PF03601 Conserved hypothetical protein 698 JS278_03123 PF01261 Xylose isomerase-like TIM barrel JS278_03124 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_03124 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_03126 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_03126 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_03127 PF00083 Sugar (and other) transporter JS278_03128 PF00083 Sugar (and other) transporter JS278_03129 PF00356 Bacterial regulatory proteins, lacI family JS278_03130 PF00083 Sugar (and other) transporter JS278_03131 PF00356 Bacterial regulatory proteins, lacI family JS278_03133 PF01261 Xylose isomerase-like TIM barrel JS278_03134 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JS278_03134 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JS278_03135 PF01261 Xylose isomerase-like TIM barrel JS278_03136 PF00171 Aldehyde dehydrogenase family JS278_03137 PF00392 Bacterial regulatory proteins, gntR family JS278_03137 PF07702 UTRA domain JS278_03139 PF00155 Aminotransferase class I and II JS278_03140 PF01820 D-ala D-ala ligase N-terminus JS278_03140 PF07478 D-ala D-ala ligase C-terminus JS278_03142 PF12823 Domain of unknown function (DUF3817) JS278_03143 PF13298 DNA polymerase Ligase (LigD) JS278_03143 PF01068 ATP dependent DNA ligase domain JS278_03143 PF04679 ATP dependent DNA ligase C terminal region JS278_03144 PF17762 HTH domain found in ParB protein JS278_03144 PF02195 ParB-like nuclease domain JS278_03145 PF13614 AAA domain JS278_03146 PF02527 rRNA small subunit methyltransferase G JS278_03147 PF00893 Small Multidrug Resistance protein JS278_03149 PF02096 60Kd inner membrane protein JS278_03150 PF01809 Putative membrane protein insertion efficiency factor JS278_03151 PF00825 Ribonuclease P JS278_03152 PF00468 Ribosomal protein L34