locus-tag class description A5904_00005 PF00308 Bacterial dnaA protein A5904_00005 PF11638 DnaA N-terminal domain A5904_00005 PF08299 Bacterial dnaA protein helix-turn-helix A5904_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain A5904_00010 PF02767 DNA polymerase III beta subunit, central domain A5904_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain A5904_00015 PF02463 RecF/RecN/SMC N terminal domain A5904_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_00020 PF18053 DNA gyrase B subunit insert domain A5904_00020 PF00986 DNA gyrase B subunit, carboxyl terminus A5904_00020 PF00204 DNA gyrase B A5904_00020 PF01751 Toprim domain A5904_00025 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_00030 PF03776 Septum formation topological specificity factor MinE A5904_00035 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain A5904_00040 PF03775 Septum formation inhibitor MinC, C-terminal domain A5904_00040 PF05209 Septum formation inhibitor MinC, N-terminal domain A5904_00045 PF11953 Domain of unknown function (DUF3470) A5904_00045 PF00037 4Fe-4S binding domain A5904_00050 PF01131 DNA topoisomerase A5904_00050 PF01751 Toprim domain A5904_00050 PF13368 Topoisomerase C-terminal repeat A5904_00055 PF04361 Protein of unknown function (DUF494) A5904_00060 PF17782 DprA winged helix domain A5904_00060 PF02481 DNA recombination-mediator protein A A5904_00070 PF01327 Polypeptide deformylase A5904_00075 PF00551 Formyl transferase A5904_00075 PF02911 Formyl transferase, C-terminal domain A5904_00080 PF01029 NusB family A5904_00080 PF01189 16S rRNA methyltransferase RsmB/F A5904_00085 PF00989 PAS fold A5904_00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_00085 PF00512 His Kinase A (phospho-acceptor) domain A5904_00085 PF00672 HAMP domain A5904_00090 PF02954 Bacterial regulatory protein, Fis family A5904_00090 PF00072 Response regulator receiver domain A5904_00090 PF00158 Sigma-54 interaction domain A5904_00095 PF00994 Probable molybdopterin binding domain A5904_00105 PF13932 GidA associated domain A5904_00105 PF01134 Glucose inhibited division protein A A5904_00110 PF02527 rRNA small subunit methyltransferase G A5904_00115 PF13614 AAA domain A5904_00120 PF02195 ParB-like nuclease domain A5904_00120 PF17762 HTH domain found in ParB protein A5904_00130 PF00119 ATP synthase A chain A5904_00135 PF00137 ATP synthase subunit C A5904_00140 PF00430 ATP synthase B/B' CF(0) A5904_00145 PF00213 ATP synthase delta (OSCP) subunit A5904_00150 PF02874 ATP synthase alpha/beta family, beta-barrel domain A5904_00150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A5904_00150 PF00306 ATP synthase alpha/beta chain, C terminal domain A5904_00155 PF00231 ATP synthase A5904_00160 PF02874 ATP synthase alpha/beta family, beta-barrel domain A5904_00160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A5904_00165 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A5904_00165 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain A5904_00170 PF14602 Hexapeptide repeat of succinyl-transferase A5904_00170 PF12804 MobA-like NTP transferase domain A5904_00170 PF00132 Bacterial transferase hexapeptide (six repeats) A5904_00175 PF01380 SIS domain A5904_00230 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_00230 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_00230 PF01610 Transposase A5904_00250 PF00990 Diguanylate cyclase, GGDEF domain A5904_00250 PF00072 Response regulator receiver domain A5904_00260 PF01556 DnaJ C terminal domain A5904_00260 PF00226 DnaJ domain A5904_00265 PF13361 UvrD-like helicase C-terminal domain A5904_00265 PF00580 UvrD/REP helicase N-terminal domain A5904_00275 PF00512 His Kinase A (phospho-acceptor) domain A5904_00275 PF00672 HAMP domain A5904_00275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_00280 PF00486 Transcriptional regulatory protein, C terminal A5904_00280 PF00072 Response regulator receiver domain A5904_00295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A5904_00300 PF00873 AcrB/AcrD/AcrF family A5904_00310 PF01741 Large-conductance mechanosensitive channel, MscL A5904_00315 PF02646 RmuC family A5904_00320 PF02401 LytB protein A5904_00330 PF00459 Inositol monophosphatase family A5904_00335 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded A5904_00340 PF00456 Transketolase, thiamine diphosphate binding domain A5904_00340 PF02780 Transketolase, C-terminal domain A5904_00340 PF02779 Transketolase, pyrimidine binding domain A5904_00345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A5904_00345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A5904_00350 PF00162 Phosphoglycerate kinase A5904_00355 PF00224 Pyruvate kinase, barrel domain A5904_00355 PF02887 Pyruvate kinase, alpha/beta domain A5904_00360 PF01116 Fructose-bisphosphate aldolase class-II A5904_00365 PF00834 Ribulose-phosphate 3 epimerase family A5904_00370 PF13419 Haloacid dehalogenase-like hydrolase A5904_00375 PF04715 Anthranilate synthase component I, N terminal region A5904_00375 PF00425 chorismate binding enzyme A5904_00380 PF00117 Glutamine amidotransferase class-I A5904_00385 PF00591 Glycosyl transferase family, a/b domain A5904_00385 PF02885 Glycosyl transferase family, helical bundle domain A5904_00390 PF00218 Indole-3-glycerol phosphate synthase A5904_00405 PF03232 Ubiquinone biosynthesis protein COQ7 A5904_00415 PF02129 X-Pro dipeptidyl-peptidase (S15 family) A5904_00420 PF00005 ABC transporter A5904_00425 PF01061 ABC-2 type transporter A5904_00450 PF11855 Protein of unknown function (DUF3375) A5904_00475 PF05016 ParE toxin of type II toxin-antitoxin system, parDE A5904_00485 PF00589 Phage integrase family A5904_00560 PF03707 Bacterial signalling protein N terminal repeat A5904_00560 PF00563 EAL domain A5904_00560 PF00990 Diguanylate cyclase, GGDEF domain A5904_00565 PF01270 Glycosyl hydrolases family 8 A5904_00610 PF00483 Nucleotidyl transferase A5904_00610 PF01050 Mannose-6-phosphate isomerase A5904_00615 PF16363 GDP-mannose 4,6 dehydratase A5904_00620 PF16363 GDP-mannose 4,6 dehydratase A5904_00625 PF00534 Glycosyl transferases group 1 A5904_00625 PF13439 Glycosyltransferase Family 4 A5904_00630 PF00534 Glycosyl transferases group 1 A5904_00630 PF13439 Glycosyltransferase Family 4 A5904_00640 PF16363 GDP-mannose 4,6 dehydratase A5904_00645 PF01370 NAD dependent epimerase/dehydratase family A5904_00655 PF00005 ABC transporter A5904_00660 PF01061 ABC-2 type transporter A5904_00670 PF00535 Glycosyl transferase family 2 A5904_00685 PF14667 Polysaccharide biosynthesis C-terminal domain A5904_00685 PF01943 Polysaccharide biosynthesis protein A5904_00690 PF02397 Bacterial sugar transferase A5904_00695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A5904_00695 PF02896 PEP-utilising enzyme, TIM barrel domain A5904_00695 PF00391 PEP-utilising enzyme, mobile domain A5904_00695 PF05524 PEP-utilising enzyme, N-terminal A5904_00695 PF00381 PTS HPr component phosphorylation site A5904_00700 PF02734 DAK2 domain A5904_00705 PF02733 Dak1 domain A5904_00715 PF03707 Bacterial signalling protein N terminal repeat A5904_00715 PF00990 Diguanylate cyclase, GGDEF domain A5904_00715 PF00563 EAL domain A5904_00725 PF18073 Rubredoxin metal binding domain A5904_00730 PF01168 Alanine racemase, N-terminal domain A5904_00730 PF00842 Alanine racemase, C-terminal domain A5904_00740 PF03796 DnaB-like helicase C terminal domain A5904_00740 PF00772 DnaB-like helicase N terminal domain A5904_00745 PF01281 Ribosomal protein L9, N-terminal domain A5904_00745 PF03948 Ribosomal protein L9, C-terminal domain A5904_00755 PF01084 Ribosomal protein S18 A5904_00760 PF01250 Ribosomal protein S6 A5904_00765 PF00933 Glycosyl hydrolase family 3 N terminal domain A5904_00770 PF13520 Amino acid permease A5904_00780 PF01938 TRAM domain A5904_00780 PF05958 tRNA (Uracil-5-)-methyltransferase A5904_00795 PF00291 Pyridoxal-phosphate dependent enzyme A5904_00805 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase A5904_00820 PF01625 Peptide methionine sulfoxide reductase A5904_00825 PF01641 SelR domain A5904_00830 PF00563 EAL domain A5904_00830 PF03707 Bacterial signalling protein N terminal repeat A5904_00830 PF00990 Diguanylate cyclase, GGDEF domain A5904_00835 PF13538 UvrD-like helicase C-terminal domain A5904_00840 PF12705 PD-(D/E)XK nuclease superfamily A5904_00840 PF00580 UvrD/REP helicase N-terminal domain A5904_00840 PF13361 UvrD-like helicase C-terminal domain A5904_00845 PF17946 RecC C-terminal domain A5904_00855 PF05114 Protein of unknown function (DUF692) A5904_00870 PF00158 Sigma-54 interaction domain A5904_00870 PF00072 Response regulator receiver domain A5904_00880 PF00512 His Kinase A (phospho-acceptor) domain A5904_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_00885 PF01979 Amidohydrolase family A5904_00890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A5904_00890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A5904_00895 PF00156 Phosphoribosyl transferase domain A5904_00900 PF03652 Holliday junction resolvase A5904_00905 PF02622 Uncharacterized ACR, COG1678 A5904_00910 PF02951 Prokaryotic glutathione synthetase, N-terminal domain A5904_00910 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain A5904_00920 PF00285 Citrate synthase, C-terminal domain A5904_00925 PF01521 Iron-sulphur cluster biosynthesis A5904_00935 PF07664 Ferrous iron transport protein B C terminus A5904_00935 PF02421 Ferrous iron transport protein B A5904_00935 PF07670 Nucleoside recognition A5904_00945 PF06146 Phosphate-starvation-inducible E A5904_00950 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_00950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A5904_00955 PF02780 Transketolase, C-terminal domain A5904_00955 PF02779 Transketolase, pyrimidine binding domain A5904_00955 PF00364 Biotin-requiring enzyme A5904_00960 PF00676 Dehydrogenase E1 component A5904_00970 PF03600 Citrate transporter A5904_00970 PF02080 TrkA-C domain A5904_00975 PF00486 Transcriptional regulatory protein, C terminal A5904_00975 PF00072 Response regulator receiver domain A5904_00980 PF13493 Domain of unknown function (DUF4118) A5904_00980 PF13492 GAF domain A5904_00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_00980 PF00512 His Kinase A (phospho-acceptor) domain A5904_00980 PF02702 Osmosensitive K+ channel His kinase sensor domain A5904_00990 PF03814 Potassium-transporting ATPase A subunit A5904_01000 PF02669 K+-transporting ATPase, c chain A5904_01010 PF00875 DNA photolyase A5904_01010 PF03441 FAD binding domain of DNA photolyase A5904_01020 PF07690 Major Facilitator Superfamily A5904_01035 PF08281 Sigma-70, region 4 A5904_01035 PF04542 Sigma-70 region 2 A5904_01055 PF01209 ubiE/COQ5 methyltransferase family A5904_01060 PF04379 ApaG domain A5904_01065 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain A5904_01065 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain A5904_01065 PF06827 Zinc finger found in FPG and IleRS A5904_01080 PF00120 Glutamine synthetase, catalytic domain A5904_01080 PF03951 Glutamine synthetase, beta-Grasp domain A5904_01090 PF01975 Survival protein SurE A5904_01100 PF04545 Sigma-70, region 4 A5904_01100 PF04539 Sigma-70 region 3 A5904_01100 PF04542 Sigma-70 region 2 A5904_01100 PF00140 Sigma-70 factor, region 1.2 A5904_01105 PF04430 Protein of unknown function (DUF498/DUF598) A5904_01110 PF00155 Aminotransferase class I and II A5904_01115 PF03447 Homoserine dehydrogenase, NAD binding domain A5904_01115 PF01842 ACT domain A5904_01115 PF00742 Homoserine dehydrogenase A5904_01120 PF00291 Pyridoxal-phosphate dependent enzyme A5904_01130 PF01368 DHH family A5904_01130 PF17768 RecJ OB domain A5904_01130 PF02272 DHHA1 domain A5904_01140 PF00152 tRNA synthetases class II (D, K and N) A5904_01140 PF01336 OB-fold nucleic acid binding domain A5904_01145 PF02687 FtsX-like permease family A5904_01145 PF12704 MacB-like periplasmic core domain A5904_01150 PF00005 ABC transporter A5904_01160 PF00753 Metallo-beta-lactamase superfamily A5904_01160 PF03772 Competence protein A5904_01170 PF02472 Biopolymer transport protein ExbD/TolR A5904_01185 PF02606 Tetraacyldisaccharide-1-P 4'-kinase A5904_01190 PF03966 Trm112p-like protein A5904_01195 PF02348 Cytidylyltransferase A5904_01200 PF00719 Inorganic pyrophosphatase A5904_01215 PF00294 pfkB family carbohydrate kinase A5904_01225 PF02773 S-adenosylmethionine synthetase, C-terminal domain A5904_01225 PF02772 S-adenosylmethionine synthetase, central domain A5904_01225 PF00438 S-adenosylmethionine synthetase, N-terminal domain A5904_01230 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain A5904_01230 PF05221 S-adenosyl-L-homocysteine hydrolase A5904_01235 PF02219 Methylenetetrahydrofolate reductase A5904_01240 PF00485 Phosphoribulokinase / Uridine kinase family A5904_01245 PF01145 SPFH domain / Band 7 family A5904_01255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A5904_01255 PF00128 Alpha amylase, catalytic domain A5904_01255 PF02806 Alpha amylase, C-terminal all-beta domain A5904_01265 PF00083 Sugar (and other) transporter A5904_01275 PF00873 AcrB/AcrD/AcrF family A5904_01290 PF00902 Sec-independent protein translocase protein (TatC) A5904_01295 PF02416 mttA/Hcf106 family A5904_01300 PF02416 mttA/Hcf106 family A5904_01305 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase A5904_01305 PF01502 Phosphoribosyl-AMP cyclohydrolase A5904_01310 PF00977 Histidine biosynthesis protein A5904_01315 PF00977 Histidine biosynthesis protein A5904_01320 PF00117 Glutamine amidotransferase class-I A5904_01325 PF00475 Imidazoleglycerol-phosphate dehydratase A5904_01330 PF00155 Aminotransferase class I and II A5904_01335 PF00815 Histidinol dehydrogenase A5904_01340 PF01634 ATP phosphoribosyltransferase A5904_01345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A5904_01350 PF00462 Glutaredoxin A5904_01360 PF01061 ABC-2 type transporter A5904_01365 PF00639 PPIC-type PPIASE domain A5904_01365 PF09312 SurA N-terminal domain A5904_01370 PF04453 LPS transport system D A5904_01375 PF01636 Phosphotransferase enzyme family A5904_01380 PF00483 Nucleotidyl transferase A5904_01395 PF00571 CBS domain A5904_01395 PF01380 SIS domain A5904_01410 PF03968 OstA-like protein A5904_01415 PF00005 ABC transporter A5904_01420 PF00309 Sigma-54 factor, Activator interacting domain (AID) A5904_01420 PF04552 Sigma-54, DNA binding domain A5904_01420 PF04963 Sigma-54 factor, core binding domain A5904_01425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein A5904_01430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A5904_01430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A5904_01430 PF02378 Phosphotransferase system, EIIC A5904_01435 PF02603 HPr Serine kinase N terminus A5904_01435 PF07475 HPr Serine kinase C-terminal domain A5904_01440 PF03668 P-loop ATPase protein family A5904_01455 PF17969 L,D-transpeptidase C-terminal domain A5904_01455 PF01476 LysM domain A5904_01455 PF03734 L,D-transpeptidase catalytic domain A5904_01465 PF00633 Helix-hairpin-helix motif A5904_01465 PF00730 HhH-GPD superfamily base excision DNA repair protein A5904_01465 PF10576 Iron-sulfur binding domain of endonuclease III A5904_01475 PF08323 Starch synthase catalytic domain A5904_01475 PF00534 Glycosyl transferases group 1 A5904_01485 PF16363 GDP-mannose 4,6 dehydratase A5904_01490 PF04321 RmlD substrate binding domain A5904_01505 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase A5904_01510 PF00483 Nucleotidyl transferase A5904_01515 PF00483 Nucleotidyl transferase A5904_01525 PF00072 Response regulator receiver domain A5904_01525 PF00158 Sigma-54 interaction domain A5904_01535 PF00512 His Kinase A (phospho-acceptor) domain A5904_01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_01535 PF00672 HAMP domain A5904_01545 PF02463 RecF/RecN/SMC N terminal domain A5904_01550 PF01513 ATP-NAD kinase A5904_01555 PF00381 PTS HPr component phosphorylation site A5904_01560 PF05524 PEP-utilising enzyme, N-terminal A5904_01560 PF00391 PEP-utilising enzyme, mobile domain A5904_01560 PF02896 PEP-utilising enzyme, TIM barrel domain A5904_01570 PF14815 NUDIX domain A5904_01570 PF00730 HhH-GPD superfamily base excision DNA repair protein A5904_01570 PF00633 Helix-hairpin-helix motif A5904_01575 PF04362 Bacterial Fe(2+) trafficking A5904_01605 PF00206 Lyase A5904_01605 PF10415 Fumarase C C-terminus A5904_01610 PF00793 DAHP synthetase I family A5904_01610 PF18152 DAHP synthase ferredoxin-like domain A5904_01620 PF01588 Putative tRNA binding domain A5904_01620 PF09334 tRNA synthetases class I (M) A5904_01625 PF05195 Aminopeptidase P, N-terminal domain A5904_01625 PF00557 Metallopeptidase family M24 A5904_01635 PF03309 Type III pantothenate kinase A5904_01640 PF08279 HTH domain A5904_01640 PF03099 Biotin/lipoate A/B protein ligase family A5904_01640 PF02237 Biotin protein ligase C terminal domain A5904_01645 PF00171 Aldehyde dehydrogenase family A5904_01660 PF00133 tRNA synthetases class I (I, L, M and V) A5904_01660 PF13603 Leucyl-tRNA synthetase, Domain 2 A5904_01660 PF08264 Anticodon-binding domain of tRNA A5904_01665 PF01985 CRS1 / YhbY (CRM) domain A5904_01670 PF01728 FtsJ-like methyltransferase A5904_01690 PF05598 Transposase domain (DUF772) A5904_01690 PF01609 Transposase DDE domain A5904_01695 PF00589 Phage integrase family A5904_01705 PF10544 T5orf172 domain A5904_01755 PF00999 Sodium/hydrogen exchanger family A5904_01770 PF01118 Semialdehyde dehydrogenase, NAD binding domain A5904_01770 PF02774 Semialdehyde dehydrogenase, dimerisation domain A5904_01775 PF00380 Ribosomal protein S9/S16 A5904_01780 PF00572 Ribosomal protein L13 A5904_01790 PF02322 Cytochrome bd terminal oxidase subunit II A5904_01810 PF00342 Phosphoglucose isomerase A5904_01815 PF00768 D-alanyl-D-alanine carboxypeptidase A5904_01815 PF07943 Penicillin-binding protein 5, C-terminal domain A5904_01820 PF00912 Transglycosylase A5904_01820 PF17092 Penicillin-binding protein OB-like domain A5904_01820 PF00905 Penicillin binding protein transpeptidase domain A5904_01830 PF00873 AcrB/AcrD/AcrF family A5904_01845 PF00512 His Kinase A (phospho-acceptor) domain A5904_01845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_01845 PF08521 Two-component sensor kinase N-terminal A5904_01850 PF00486 Transcriptional regulatory protein, C terminal A5904_01850 PF00072 Response regulator receiver domain A5904_01860 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A5904_01860 PF14572 Phosphoribosyl synthetase-associated domain A5904_01870 PF00288 GHMP kinases N terminal domain A5904_01890 PF01488 Shikimate / quinate 5-dehydrogenase A5904_01890 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain A5904_01890 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain A5904_01895 PF00472 RF-1 domain A5904_01895 PF03462 PCRF domain A5904_01900 PF05175 Methyltransferase small domain A5904_01900 PF17827 PrmC N-terminal domain A5904_01905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain A5904_01905 PF06827 Zinc finger found in FPG and IleRS A5904_01905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain A5904_01910 PF00350 Dynamin family A5904_01915 PF00037 4Fe-4S binding domain A5904_01920 PF01467 Cytidylyltransferase-like A5904_01925 PF10672 S-adenosylmethionine-dependent methyltransferase A5904_01925 PF01170 Putative RNA methylase family UPF0020 A5904_01925 PF02926 THUMP domain A5904_01930 PF00448 SRP54-type protein, GTPase domain A5904_01930 PF02881 SRP54-type protein, helical bundle domain A5904_01935 PF00005 ABC transporter A5904_01940 PF18075 FtsX extracellular domain A5904_01945 PF04545 Sigma-70, region 4 A5904_01945 PF04542 Sigma-70 region 2 A5904_01945 PF00140 Sigma-70 factor, region 1.2 A5904_01955 PF12794 Mechanosensitive ion channel inner membrane domain 1 A5904_01955 PF00924 Mechanosensitive ion channel A5904_01955 PF12795 Mechanosensitive ion channel porin domain A5904_01960 PF07724 AAA domain (Cdc48 subfamily) A5904_01960 PF00004 ATPase family associated with various cellular activities (AAA) A5904_01965 PF00227 Proteasome subunit A5904_01970 PF00589 Phage integrase family A5904_01970 PF02899 Phage integrase, N-terminal SAM-like domain A5904_01980 PF01678 Diaminopimelate epimerase A5904_01990 PF00106 short chain dehydrogenase A5904_02015 PF01270 Glycosyl hydrolases family 8 A5904_02045 PF03552 Cellulose synthase A5904_02045 PF00535 Glycosyl transferase family 2 A5904_02045 PF07238 PilZ domain A5904_02065 PF03880 DbpA RNA binding domain A5904_02065 PF00270 DEAD/DEAH box helicase A5904_02065 PF00271 Helicase conserved C-terminal domain A5904_02070 PF00313 'Cold-shock' DNA-binding domain A5904_02085 PF00665 Integrase core domain A5904_02090 PF01695 IstB-like ATP binding protein A5904_02120 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_02120 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_02120 PF01610 Transposase A5904_02130 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_02130 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_02130 PF01610 Transposase A5904_02140 PF00535 Glycosyl transferase family 2 A5904_02145 PF02954 Bacterial regulatory protein, Fis family A5904_02145 PF00072 Response regulator receiver domain A5904_02145 PF00158 Sigma-54 interaction domain A5904_02160 PF18074 Primosomal protein N C-terminal domain A5904_02160 PF17764 3′ DNA-binding domain (3′BD) A5904_02160 PF18319 PriA DNA helicase Cys-rich region (CRR) domain A5904_02160 PF00270 DEAD/DEAH box helicase A5904_02160 PF00271 Helicase conserved C-terminal domain A5904_02175 PF01545 Cation efflux family A5904_02180 PF00398 Ribosomal RNA adenine dimethylase A5904_02185 PF00483 Nucleotidyl transferase A5904_02195 PF09094 Domain of unknown function (DUF1925) A5904_02195 PF09095 Domain of unknown function (DUF1926) A5904_02195 PF03065 Glycosyl hydrolase family 57 A5904_02200 PF00480 ROK family A5904_02205 PF01177 Asp/Glu/Hydantoin racemase A5904_02215 PF04286 Protein of unknown function (DUF445) A5904_02220 PF02696 Uncharacterized ACR, YdiU/UPF0061 family A5904_02225 PF00919 Uncharacterized protein family UPF0004 A5904_02225 PF04055 Radical SAM superfamily A5904_02225 PF01938 TRAM domain A5904_02230 PF02562 PhoH-like protein A5904_02235 PF02130 Uncharacterized protein family UPF0054 A5904_02240 PF00571 CBS domain A5904_02240 PF03471 Transporter associated domain A5904_02245 PF00795 Carbon-nitrogen hydrolase A5904_02290 PF00817 impB/mucB/samB family A5904_02290 PF11799 impB/mucB/samB family C-terminal domain A5904_02295 PF00795 Carbon-nitrogen hydrolase A5904_02310 PF05114 Protein of unknown function (DUF692) A5904_02330 PF02683 Cytochrome C biogenesis protein transmembrane region A5904_02330 PF11412 Disulphide bond corrector protein DsbC A5904_02350 PF07690 Major Facilitator Superfamily A5904_02360 PF00581 Rhodanese-like domain A5904_02360 PF00753 Metallo-beta-lactamase superfamily A5904_02375 PF01209 ubiE/COQ5 methyltransferase family A5904_02425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A5904_02425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A5904_02425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A5904_02425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A5904_02440 PF02978 Signal peptide binding domain A5904_02440 PF00448 SRP54-type protein, GTPase domain A5904_02440 PF02881 SRP54-type protein, helical bundle domain A5904_02445 PF00886 Ribosomal protein S16 A5904_02450 PF01782 RimM N-terminal domain A5904_02450 PF05239 PRC-barrel domain A5904_02455 PF01746 tRNA (Guanine-1)-methyltransferase A5904_02460 PF01245 Ribosomal protein L19 A5904_02470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A5904_02470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A5904_02475 PF02899 Phage integrase, N-terminal SAM-like domain A5904_02475 PF00589 Phage integrase family A5904_02480 PF13180 PDZ domain A5904_02485 PF00085 Thioredoxin A5904_02500 PF00464 Serine hydroxymethyltransferase A5904_02505 PF03477 ATP cone domain A5904_02510 PF01872 RibD C-terminal domain A5904_02510 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A5904_02515 PF00677 Lumazine binding domain A5904_02520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase A5904_02520 PF00925 GTP cyclohydrolase II A5904_02525 PF00885 6,7-dimethyl-8-ribityllumazine synthase A5904_02530 PF01029 NusB family A5904_02545 PF03109 ABC1 family A5904_02550 PF00691 OmpA family A5904_02550 PF04972 BON domain A5904_02575 PF00009 Elongation factor Tu GTP binding domain A5904_02575 PF03144 Elongation factor Tu domain 2 A5904_02575 PF03143 Elongation factor Tu C-terminal domain A5904_02585 PF00584 SecE/Sec61-gamma subunits of protein translocation complex A5904_02590 PF00467 KOW motif A5904_02590 PF02357 Transcription termination factor nusG A5904_02595 PF03946 Ribosomal protein L11, N-terminal domain A5904_02595 PF00298 Ribosomal protein L11, RNA binding domain A5904_02600 PF00687 Ribosomal protein L1p/L10e family A5904_02605 PF00466 Ribosomal protein L10 A5904_02610 PF16320 Ribosomal protein L7/L12 dimerisation domain A5904_02610 PF00542 Ribosomal protein L7/L12 C-terminal domain A5904_02615 PF04561 RNA polymerase Rpb2, domain 2 A5904_02615 PF00562 RNA polymerase Rpb2, domain 6 A5904_02615 PF10385 RNA polymerase beta subunit external 1 domain A5904_02615 PF04565 RNA polymerase Rpb2, domain 3 A5904_02615 PF04560 RNA polymerase Rpb2, domain 7 A5904_02615 PF04563 RNA polymerase beta subunit A5904_02620 PF04983 RNA polymerase Rpb1, domain 3 A5904_02620 PF00623 RNA polymerase Rpb1, domain 2 A5904_02620 PF04997 RNA polymerase Rpb1, domain 1 A5904_02620 PF05000 RNA polymerase Rpb1, domain 4 A5904_02620 PF04998 RNA polymerase Rpb1, domain 5 A5904_02625 PF00164 Ribosomal protein S12/S23 A5904_02630 PF00177 Ribosomal protein S7p/S5e A5904_02635 PF00679 Elongation factor G C-terminus A5904_02635 PF03144 Elongation factor Tu domain 2 A5904_02635 PF00009 Elongation factor Tu GTP binding domain A5904_02635 PF14492 Elongation Factor G, domain II A5904_02635 PF03764 Elongation factor G, domain IV A5904_02645 PF00009 Elongation factor Tu GTP binding domain A5904_02645 PF03144 Elongation factor Tu domain 2 A5904_02645 PF03143 Elongation factor Tu C-terminal domain A5904_02650 PF00338 Ribosomal protein S10p/S20e A5904_02655 PF00297 Ribosomal protein L3 A5904_02660 PF00573 Ribosomal protein L4/L1 family A5904_02665 PF00276 Ribosomal protein L23 A5904_02670 PF03947 Ribosomal Proteins L2, C-terminal domain A5904_02670 PF00181 Ribosomal Proteins L2, RNA binding domain A5904_02675 PF00203 Ribosomal protein S19 A5904_02680 PF00237 Ribosomal protein L22p/L17e A5904_02685 PF07650 KH domain A5904_02685 PF00189 Ribosomal protein S3, C-terminal domain A5904_02690 PF00252 Ribosomal protein L16p/L10e A5904_02695 PF00831 Ribosomal L29 protein A5904_02700 PF00366 Ribosomal protein S17 A5904_02705 PF00238 Ribosomal protein L14p/L23e A5904_02710 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 A5904_02710 PF00467 KOW motif A5904_02715 PF00281 Ribosomal protein L5 A5904_02715 PF00673 ribosomal L5P family C-terminus A5904_02720 PF00253 Ribosomal protein S14p/S29e A5904_02725 PF00410 Ribosomal protein S8 A5904_02730 PF00347 Ribosomal protein L6 A5904_02735 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast A5904_02740 PF00333 Ribosomal protein S5, N-terminal domain A5904_02740 PF03719 Ribosomal protein S5, C-terminal domain A5904_02745 PF00327 Ribosomal protein L30p/L7e A5904_02750 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A A5904_02755 PF00344 SecY translocase A5904_02760 PF05191 Adenylate kinase, active site lid A5904_02765 PF01176 Translation initiation factor 1A / IF-1 A5904_02770 PF00444 Ribosomal protein L36 A5904_02775 PF00416 Ribosomal protein S13/S18 A5904_02780 PF00411 Ribosomal protein S11 A5904_02785 PF00163 Ribosomal protein S4/S9 N-terminal domain A5904_02785 PF01479 S4 domain A5904_02790 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain A5904_02790 PF01000 RNA polymerase Rpb3/RpoA insert domain A5904_02790 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain A5904_02795 PF01196 Ribosomal protein L17 A5904_02800 PF17755 UvrA DNA-binding domain A5904_02800 PF17760 UvrA interaction domain A5904_02805 PF00436 Single-strand binding protein family A5904_02810 PF00589 Phage integrase family A5904_02810 PF13495 Phage integrase, N-terminal SAM-like domain A5904_02820 PF01523 Putative modulator of DNA gyrase A5904_02825 PF01966 HD domain A5904_02825 PF01743 Poly A polymerase head domain A5904_02825 PF12627 Probable RNA and SrmB- binding site of polymerase A A5904_02830 PF00330 Aconitase family (aconitate hydratase) A5904_02835 PF00694 Aconitase C-terminal domain A5904_02845 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region A5904_02845 PF01243 Pyridoxamine 5'-phosphate oxidase A5904_02850 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) A5904_02860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain A5904_02860 PF06481 COX Aromatic Rich Motif A5904_02865 PF00115 Cytochrome C and Quinol oxidase polypeptide I A5904_02870 PF00510 Cytochrome c oxidase subunit III A5904_02885 PF01040 UbiA prenyltransferase family A5904_02890 PF07690 Major Facilitator Superfamily A5904_02895 PF02673 Bacitracin resistance protein BacA A5904_02900 PF03449 Transcription elongation factor, N-terminal A5904_02900 PF01272 Transcription elongation factor, GreA/GreB, C-term A5904_02905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A5904_02905 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A5904_02905 PF02142 MGS-like domain A5904_02910 PF00117 Glutamine amidotransferase class-I A5904_02910 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain A5904_02930 PF13520 Amino acid permease A5904_02935 PF00348 Polyprenyl synthetase A5904_02945 PF03717 Penicillin-binding Protein dimerisation domain A5904_02945 PF00905 Penicillin binding protein transpeptidase domain A5904_02970 PF03167 Uracil DNA glycosylase superfamily A5904_02975 PF01370 NAD dependent epimerase/dehydratase family A5904_02980 PF00296 Luciferase-like monooxygenase A5904_02990 PF00929 Exonuclease A5904_02995 PF00486 Transcriptional regulatory protein, C terminal A5904_02995 PF00072 Response regulator receiver domain A5904_03015 PF02472 Biopolymer transport protein ExbD/TolR A5904_03020 PF01618 MotA/TolQ/ExbB proton channel family A5904_03045 PF00905 Penicillin binding protein transpeptidase domain A5904_03045 PF03717 Penicillin-binding Protein dimerisation domain A5904_03060 PF01180 Dihydroorotate dehydrogenase A5904_03065 PF01218 Coproporphyrinogen III oxidase A5904_03070 PF01300 Telomere recombination A5904_03075 PF02843 Phosphoribosylglycinamide synthetase, C domain A5904_03075 PF02844 Phosphoribosylglycinamide synthetase, N domain A5904_03075 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain A5904_03080 PF02142 MGS-like domain A5904_03080 PF01808 AICARFT/IMPCHase bienzyme A5904_03085 PF00465 Iron-containing alcohol dehydrogenase A5904_03090 PF06071 Protein of unknown function (DUF933) A5904_03090 PF01926 50S ribosome-binding GTPase A5904_03095 PF01195 Peptidyl-tRNA hydrolase A5904_03100 PF14693 Ribosomal protein TL5, C-terminal domain A5904_03100 PF01386 Ribosomal L25p family A5904_03105 PF03717 Penicillin-binding Protein dimerisation domain A5904_03105 PF00905 Penicillin binding protein transpeptidase domain A5904_03125 PF01812 5-formyltetrahydrofolate cyclo-ligase family A5904_03130 PF13277 YmdB-like protein A5904_03140 PF00857 Isochorismatase family A5904_03140 PF00550 Phosphopantetheine attachment site A5904_03160 PF00873 AcrB/AcrD/AcrF family A5904_03185 PF00582 Universal stress protein family A5904_03190 PF04073 Aminoacyl-tRNA editing domain A5904_03190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A5904_03190 PF03129 Anticodon binding domain A5904_03200 PF01925 Sulfite exporter TauE/SafE A5904_03215 PF01654 Cytochrome bd terminal oxidase subunit I A5904_03225 PF13520 Amino acid permease A5904_03230 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain A5904_03230 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain A5904_03235 PF08264 Anticodon-binding domain of tRNA A5904_03235 PF10458 Valyl tRNA synthetase tRNA binding arm A5904_03235 PF00133 tRNA synthetases class I (I, L, M and V) A5904_03250 PF00883 Cytosol aminopeptidase family, catalytic domain A5904_03250 PF02789 Cytosol aminopeptidase family, N-terminal domain A5904_03265 PF00350 Dynamin family A5904_03285 PF01491 Frataxin-like domain A5904_03290 PF00570 HRDC domain A5904_03290 PF00271 Helicase conserved C-terminal domain A5904_03290 PF00270 DEAD/DEAH box helicase A5904_03290 PF16124 RecQ zinc-binding A5904_03290 PF09382 RQC domain A5904_03300 PF00149 Calcineurin-like phosphoesterase A5904_03310 PF02556 Preprotein translocase subunit SecB A5904_03315 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus A5904_03315 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus A5904_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_03320 PF00989 PAS fold A5904_03320 PF00512 His Kinase A (phospho-acceptor) domain A5904_03325 PF00072 Response regulator receiver domain A5904_03325 PF02954 Bacterial regulatory protein, Fis family A5904_03325 PF00158 Sigma-54 interaction domain A5904_03350 PF13657 HipA N-terminal domain A5904_03350 PF07804 HipA-like C-terminal domain A5904_03410 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_03410 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_03410 PF01610 Transposase A5904_03415 PF01592 NifU-like N terminal domain A5904_03445 PF01590 GAF domain A5904_03445 PF02954 Bacterial regulatory protein, Fis family A5904_03445 PF00158 Sigma-54 interaction domain A5904_03470 PF00873 AcrB/AcrD/AcrF family A5904_03510 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain A5904_03510 PF00753 Metallo-beta-lactamase superfamily A5904_03510 PF10996 Beta-Casp domain A5904_03515 PF01649 Ribosomal protein S20 A5904_03520 PF13361 UvrD-like helicase C-terminal domain A5904_03520 PF00580 UvrD/REP helicase N-terminal domain A5904_03525 PF01790 Prolipoprotein diacylglyceryl transferase A5904_03530 PF04371 Porphyromonas-type peptidyl-arginine deiminase A5904_03535 PF01479 S4 domain A5904_03535 PF00849 RNA pseudouridylate synthase A5904_03540 PF00293 NUDIX domain A5904_03545 PF00293 NUDIX domain A5904_03560 PF00085 Thioredoxin A5904_03565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A5904_03565 PF07498 Rho termination factor, N-terminal domain A5904_03565 PF07497 Rho termination factor, RNA-binding domain A5904_03570 PF01197 Ribosomal protein L31 A5904_03575 PF00390 Malic enzyme, N-terminal domain A5904_03575 PF03949 Malic enzyme, NAD binding domain A5904_03580 PF00920 Dehydratase family A5904_03590 PF00696 Amino acid kinase family A5904_03590 PF00583 Acetyltransferase (GNAT) family A5904_03600 PF03795 YCII-related domain A5904_03605 PF04279 Intracellular septation protein A A5904_03615 PF00459 Inositol monophosphatase family A5904_03620 PF00588 SpoU rRNA Methylase family A5904_03625 PF00132 Bacterial transferase hexapeptide (six repeats) A5904_03630 PF02082 Transcriptional regulator A5904_03635 PF00266 Aminotransferase class-V A5904_03640 PF01592 NifU-like N terminal domain A5904_03645 PF01521 Iron-sulphur cluster biosynthesis A5904_03650 PF00226 DnaJ domain A5904_03650 PF07743 HSCB C-terminal oligomerisation domain A5904_03655 PF00012 Hsp70 protein A5904_03660 PF00111 2Fe-2S iron-sulfur cluster binding domain A5904_03665 PF04384 Iron-sulphur cluster assembly A5904_03675 PF00072 Response regulator receiver domain A5904_03675 PF00486 Transcriptional regulatory protein, C terminal A5904_03680 PF00989 PAS fold A5904_03680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_03680 PF11808 Phosphate regulon sensor protein PhoR A5904_03680 PF00512 His Kinase A (phospho-acceptor) domain A5904_03685 PF00005 ABC transporter A5904_03690 PF01895 PhoU domain A5904_03695 PF02541 Ppx/GppA phosphatase family A5904_03705 PF00318 Ribosomal protein S2 A5904_03710 PF00889 Elongation factor TS A5904_03715 PF00696 Amino acid kinase family A5904_03720 PF01765 Ribosome recycling factor A5904_03725 PF01255 Putative undecaprenyl diphosphate synthase A5904_03735 PF13288 DXP reductoisomerase C-terminal domain A5904_03735 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain A5904_03735 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase A5904_03740 PF17820 PDZ domain A5904_03740 PF02163 Peptidase family M50 A5904_03745 PF01103 Surface antigen A5904_03745 PF07244 Surface antigen variable number repeat A5904_03755 PF00132 Bacterial transferase hexapeptide (six repeats) A5904_03755 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD A5904_03760 PF07977 FabA-like domain A5904_03765 PF00132 Bacterial transferase hexapeptide (six repeats) A5904_03765 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 A5904_03775 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family A5904_03780 PF02684 Lipid-A-disaccharide synthetase A5904_03785 PF01351 Ribonuclease HII A5904_03790 PF07733 Bacterial DNA polymerase III alpha NTPase domain A5904_03790 PF02811 PHP domain A5904_03790 PF14579 Helix-hairpin-helix motif A5904_03790 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A5904_03790 PF01336 OB-fold nucleic acid binding domain A5904_03795 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit A5904_03800 PF01171 PP-loop family A5904_03800 PF11734 TilS substrate C-terminal domain A5904_03800 PF09179 TilS substrate binding domain A5904_03805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A5904_03805 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_03845 PF00005 ABC transporter A5904_03845 PF00664 ABC transporter transmembrane region A5904_03850 PF00106 short chain dehydrogenase A5904_03865 PF02915 Rubrerythrin A5904_03880 PF13742 OB-fold nucleic acid binding domain A5904_03880 PF02601 Exonuclease VII, large subunit A5904_03885 PF00085 Thioredoxin A5904_03905 PF03023 Lipid II flippase MurJ A5904_03910 PF01464 Transglycosylase SLT domain A5904_03920 PF00950 ABC 3 transport family A5904_03930 PF00005 ABC transporter A5904_03935 PF07690 Major Facilitator Superfamily A5904_03940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A5904_03940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A5904_03940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A5904_03940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A5904_03950 PF07690 Major Facilitator Superfamily A5904_03980 PF03203 MerC mercury resistance protein A5904_04040 PF01343 Peptidase family S49 A5904_04040 PF08496 Peptidase family S49 N-terminal A5904_04045 PF02597 ThiS family A5904_04050 PF02391 MoaE protein A5904_04055 PF04461 Protein of unknown function (DUF520) A5904_04065 PF01571 Aminomethyltransferase folate-binding domain A5904_04065 PF08669 Glycine cleavage T-protein C-terminal barrel domain A5904_04070 PF01597 Glycine cleavage H-protein A5904_04075 PF02347 Glycine cleavage system P-protein A5904_04080 PF02347 Glycine cleavage system P-protein A5904_04085 PF07726 ATPase family associated with various cellular activities (AAA) A5904_04085 PF17863 AAA lid domain A5904_04100 PF00005 ABC transporter A5904_04100 PF00664 ABC transporter transmembrane region A5904_04105 PF11953 Domain of unknown function (DUF3470) A5904_04105 PF00037 4Fe-4S binding domain A5904_04115 PF00578 AhpC/TSA family A5904_04115 PF10417 C-terminal domain of 1-Cys peroxiredoxin A5904_04125 PF01207 Dihydrouridine synthase (Dus) A5904_04135 PF03466 LysR substrate binding domain A5904_04135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_04140 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain A5904_04140 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain A5904_04145 PF00101 Ribulose bisphosphate carboxylase, small chain A5904_04185 PF00210 Ferritin-like domain A5904_04210 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A5904_04210 PF00361 Proton-conducting membrane transporter A5904_04210 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus A5904_04220 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) A5904_04230 PF07728 AAA domain (dynein-related subfamily) A5904_04230 PF08406 CbbQ/NirQ/NorQ C-terminal A5904_04255 PF01619 Proline dehydrogenase A5904_04255 PF18327 Proline utilization A proline dehydrogenase N-terminal domain A5904_04255 PF14850 DNA-binding domain of Proline dehydrogenase A5904_04255 PF00171 Aldehyde dehydrogenase family A5904_04265 PF00512 His Kinase A (phospho-acceptor) domain A5904_04265 PF00672 HAMP domain A5904_04265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_04270 PF01022 Bacterial regulatory protein, arsR family A5904_04275 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain A5904_04275 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain A5904_04280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A5904_04280 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain A5904_04285 PF01370 NAD dependent epimerase/dehydratase family A5904_04285 PF02222 ATP-grasp domain A5904_04290 PF00155 Aminotransferase class I and II A5904_04330 PF04055 Radical SAM superfamily A5904_04330 PF06969 HemN C-terminal domain A5904_04340 PF00849 RNA pseudouridylate synthase A5904_04340 PF01479 S4 domain A5904_04345 PF07690 Major Facilitator Superfamily A5904_04350 PF07943 Penicillin-binding protein 5, C-terminal domain A5904_04350 PF00768 D-alanyl-D-alanine carboxypeptidase A5904_04360 PF08241 Methyltransferase domain A5904_04375 PF01979 Amidohydrolase family A5904_04390 PF01451 Low molecular weight phosphotyrosine protein phosphatase A5904_04425 PF00892 EamA-like transporter family A5904_04430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A5904_04435 PF01738 Dienelactone hydrolase family A5904_04440 PF00440 Bacterial regulatory proteins, tetR family A5904_04440 PF16925 Tetracyclin repressor-like, C-terminal domain A5904_04465 PF00881 Nitroreductase family A5904_04525 PF00575 S1 RNA binding domain A5904_04525 PF17876 Cold shock domain A5904_04525 PF08461 Ribonuclease R winged-helix domain A5904_04525 PF08206 Ribonuclease B OB domain A5904_04525 PF00773 RNB domain A5904_04530 PF03976 Polyphosphate kinase 2 (PPK2) A5904_04535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A5904_04535 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_04545 PF18146 Damage-inducible protein CinA KH domain A5904_04545 PF02464 Competence-damaged protein A5904_04545 PF00994 Probable molybdopterin binding domain A5904_04550 PF00551 Formyl transferase A5904_04555 PF02769 AIR synthase related protein, C-terminal domain A5904_04555 PF00586 AIR synthase related protein, N-terminal domain A5904_04560 PF02777 Iron/manganese superoxide dismutases, C-terminal domain A5904_04560 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain A5904_04570 PF03631 Virulence factor BrkB A5904_04580 PF01783 Ribosomal L32p protein family A5904_04585 PF02504 Fatty acid synthesis protein A5904_04590 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III A5904_04590 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal A5904_04595 PF00698 Acyl transferase domain A5904_04605 PF00550 Phosphopantetheine attachment site A5904_04610 PF02801 Beta-ketoacyl synthase, C-terminal domain A5904_04610 PF00109 Beta-ketoacyl synthase, N-terminal domain A5904_04615 PF01063 Amino-transferase class IV A5904_04620 PF02618 YceG-like family A5904_04625 PF02223 Thymidylate kinase A5904_04630 PF09115 DNA polymerase III, delta subunit, C terminal A5904_04645 PF00589 Phage integrase family A5904_04675 PF00872 Transposase, Mutator family A5904_04755 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain A5904_04795 PF03466 LysR substrate binding domain A5904_04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_04800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A5904_04800 PF00361 Proton-conducting membrane transporter A5904_04805 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) A5904_04820 PF00920 Dehydratase family A5904_04825 PF01300 Telomere recombination A5904_04825 PF03481 Putative GTP-binding controlling metal-binding A5904_04840 PF09137 Glucodextranase, domain N A5904_04840 PF00723 Glycosyl hydrolases family 15 A5904_04845 PF00376 MerR family regulatory protein A5904_04845 PF09278 MerR, DNA binding A5904_04855 PF00403 Heavy-metal-associated domain A5904_04855 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_04855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A5904_04905 PF03050 Transposase IS66 family A5904_04905 PF13005 zinc-finger binding domain of transposase IS66 A5904_04905 PF13007 Transposase C of IS166 homeodomain A5904_04905 PF13817 IS66 C-terminal element A5904_04910 PF05717 IS66 Orf2 like protein A5904_04955 PF01695 IstB-like ATP binding protein A5904_04960 PF00665 Integrase core domain A5904_04970 PF11412 Disulphide bond corrector protein DsbC A5904_04970 PF02683 Cytochrome C biogenesis protein transmembrane region A5904_04985 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_04985 PF01610 Transposase A5904_04985 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_05010 PF05114 Protein of unknown function (DUF692) A5904_05040 PF00005 ABC transporter A5904_05045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A5904_05050 PF02321 Outer membrane efflux protein A5904_05060 PF13411 MerR HTH family regulatory protein A5904_05095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A5904_05095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A5904_05100 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) A5904_05105 PF00361 Proton-conducting membrane transporter A5904_05105 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A5904_05110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_05110 PF03466 LysR substrate binding domain A5904_05115 PF00990 Diguanylate cyclase, GGDEF domain A5904_05115 PF07694 5TMR of 5TMR-LYT A5904_05120 PF04264 YceI-like domain A5904_05125 PF03358 NADPH-dependent FMN reductase A5904_05130 PF01638 HxlR-like helix-turn-helix A5904_05190 PF02661 Fic/DOC family A5904_05190 PF13784 Fic/DOC family N-terminal A5904_05225 PF02254 TrkA-N domain A5904_05225 PF07885 Ion channel A5904_05245 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain A5904_05245 PF14490 Helix-hairpin-helix containing domain A5904_05245 PF13538 UvrD-like helicase C-terminal domain A5904_05250 PF03861 ANTAR domain A5904_05250 PF08376 Nitrate and nitrite sensing A5904_05260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A5904_05260 PF10414 Sirohaem synthase dimerisation region A5904_05265 PF02885 Glycosyl transferase family, helical bundle domain A5904_05270 PF01568 Molydopterin dinucleotide binding domain A5904_05270 PF00384 Molybdopterin oxidoreductase A5904_05270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A5904_05275 PF00355 Rieske [2Fe-2S] domain A5904_05280 PF04324 BFD-like [2Fe-2S] binding domain A5904_05280 PF18267 Rubredoxin NAD+ reductase C-terminal domain A5904_05280 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A5904_05280 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A5904_05280 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_05295 PF07690 Major Facilitator Superfamily A5904_05300 PF00005 ABC transporter A5904_05325 PF02384 N-6 DNA Methylase A5904_05325 PF12161 HsdM N-terminal domain A5904_05355 PF01610 Transposase A5904_05355 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_05355 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_05370 PF01610 Transposase A5904_05370 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_05370 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_05395 PF00665 Integrase core domain A5904_05400 PF01695 IstB-like ATP binding protein A5904_05445 PF01757 Acyltransferase family A5904_05455 PF00665 Integrase core domain A5904_05460 PF01695 IstB-like ATP binding protein A5904_05490 PF00271 Helicase conserved C-terminal domain A5904_05490 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) A5904_05490 PF08463 EcoEI R protein C-terminal A5904_05490 PF04851 Type III restriction enzyme, res subunit A5904_05510 PF13091 PLD-like domain A5904_05525 PF00436 Single-strand binding protein family A5904_05550 PF01610 Transposase A5904_05550 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_05550 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_05605 PF00437 Type II/IV secretion system protein A5904_05615 PF14718 Soluble lytic murein transglycosylase L domain A5904_05615 PF01464 Transglycosylase SLT domain A5904_05635 PF00437 Type II/IV secretion system protein A5904_05680 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_05680 PF01610 Transposase A5904_05680 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_05700 PF03135 CagE, TrbE, VirB family, component of type IV transporter system A5904_05710 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system A5904_05780 PF12161 HsdM N-terminal domain A5904_05780 PF02384 N-6 DNA Methylase A5904_05830 PF04335 VirB8 protein A5904_05840 PF03743 Bacterial conjugation TrbI-like protein A5904_05850 PF13614 AAA domain A5904_05855 PF17762 HTH domain found in ParB protein A5904_05855 PF02195 ParB-like nuclease domain A5904_05875 PF10548 P22AR C-terminal domain A5904_05875 PF08346 AntA/AntB antirepressor A5904_05880 PF02534 Type IV secretory system Conjugative DNA transfer A5904_05935 PF00665 Integrase core domain A5904_05940 PF01695 IstB-like ATP binding protein A5904_06100 PF00216 Bacterial DNA-binding protein A5904_06105 PF01464 Transglycosylase SLT domain A5904_06255 PF00589 Phage integrase family A5904_06265 PF01475 Ferric uptake regulator family A5904_06275 PF01266 FAD dependent oxidoreductase A5904_06285 PF07244 Surface antigen variable number repeat A5904_06285 PF17243 POTRA domain TamA domain 1 A5904_06285 PF01103 Surface antigen A5904_06300 PF12169 DNA polymerase III subunits gamma and tau domain III A5904_06300 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding A5904_06300 PF12170 DNA polymerase III tau subunit V interacting with alpha A5904_06305 PF02575 YbaB/EbfC DNA-binding family A5904_06310 PF13662 Toprim domain A5904_06310 PF02132 RecR protein A5904_06315 PF00909 Ammonium Transporter Family A5904_06320 PF01256 Carbohydrate kinase A5904_06320 PF03853 YjeF-related protein N-terminus A5904_06325 PF00202 Aminotransferase class-III A5904_06330 PF03448 MgtE intracellular N domain A5904_06330 PF01769 Divalent cation transporter A5904_06330 PF00571 CBS domain A5904_06335 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE A5904_06340 PF01119 DNA mismatch repair protein, C-terminal domain A5904_06340 PF08676 MutL C terminal dimerisation domain A5904_06370 PF01906 Putative heavy-metal-binding A5904_06375 PF11755 Protein of unknown function (DUF3311) A5904_06380 PF00474 Sodium:solute symporter family A5904_06390 PF00291 Pyridoxal-phosphate dependent enzyme A5904_06390 PF00585 C-terminal regulatory domain of Threonine dehydratase A5904_06395 PF03459 TOBE domain A5904_06395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_06400 PF00561 alpha/beta hydrolase fold A5904_06410 PF11974 Bacterial alpha-2-macroglobulin MG3 domain A5904_06410 PF01835 MG2 domain A5904_06410 PF00207 Alpha-2-macroglobulin family A5904_06410 PF07703 Alpha-2-macroglobulin bait region domain A5904_06410 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain A5904_06410 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain A5904_06410 PF17962 Bacterial macroglobulin domain 6 A5904_06415 PF06832 Penicillin-Binding Protein C-terminus Family A5904_06415 PF00912 Transglycosylase A5904_06415 PF00905 Penicillin binding protein transpeptidase domain A5904_06420 PF00871 Acetokinase family A5904_06425 PF00364 Biotin-requiring enzyme A5904_06425 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A5904_06425 PF02817 e3 binding domain A5904_06430 PF02779 Transketolase, pyrimidine binding domain A5904_06430 PF02780 Transketolase, C-terminal domain A5904_06435 PF00676 Dehydrogenase E1 component A5904_06445 PF01676 Metalloenzyme superfamily A5904_06445 PF06415 BPG-independent PGAM N-terminus (iPGM_N) A5904_06450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain A5904_06450 PF02896 PEP-utilising enzyme, TIM barrel domain A5904_06450 PF00391 PEP-utilising enzyme, mobile domain A5904_06460 PF05036 Sporulation related domain A5904_06460 PF03330 Lytic transglycolase A5904_06465 PF01546 Peptidase family M20/M25/M40 A5904_06465 PF07687 Peptidase dimerisation domain A5904_06470 PF14602 Hexapeptide repeat of succinyl-transferase A5904_06470 PF00132 Bacterial transferase hexapeptide (six repeats) A5904_06470 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal A5904_06475 PF00155 Aminotransferase class I and II A5904_06485 PF13419 Haloacid dehalogenase-like hydrolase A5904_06495 PF01979 Amidohydrolase family A5904_06505 PF01476 LysM domain A5904_06505 PF00877 NlpC/P60 family A5904_06515 PF02678 Pirin A5904_06515 PF05726 Pirin C-terminal cupin domain A5904_06525 PF03976 Polyphosphate kinase 2 (PPK2) A5904_06545 PF00083 Sugar (and other) transporter A5904_06550 PF13439 Glycosyltransferase Family 4 A5904_06550 PF00534 Glycosyl transferases group 1 A5904_06560 PF00072 Response regulator receiver domain A5904_06560 PF00486 Transcriptional regulatory protein, C terminal A5904_06565 PF01618 MotA/TolQ/ExbB proton channel family A5904_06570 PF02472 Biopolymer transport protein ExbD/TolR A5904_06595 PF00005 ABC transporter A5904_06595 PF12857 TOBE-like domain A5904_06610 PF02321 Outer membrane efflux protein A5904_06615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A5904_06615 PF00529 HlyD membrane-fusion protein of T1SS A5904_06625 PF07732 Multicopper oxidase A5904_06625 PF00394 Multicopper oxidase A5904_06625 PF10518 TAT (twin-arginine translocation) pathway signal sequence A5904_06625 PF07731 Multicopper oxidase A5904_06630 PF00334 Nucleoside diphosphate kinase A5904_06635 PF04055 Radical SAM superfamily A5904_06650 PF04551 GcpE protein A5904_06655 PF03129 Anticodon binding domain A5904_06655 PF13393 Histidyl-tRNA synthetase A5904_06665 PF01011 PQQ enzyme repeat A5904_06665 PF13360 PQQ-like domain A5904_06670 PF01926 50S ribosome-binding GTPase A5904_06670 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal A5904_06705 PF12849 PBP superfamily domain A5904_06710 PF00528 Binding-protein-dependent transport system inner membrane component A5904_06715 PF00528 Binding-protein-dependent transport system inner membrane component A5904_06720 PF10672 S-adenosylmethionine-dependent methyltransferase A5904_06720 PF17785 PUA-like domain A5904_06725 PF01008 Initiation factor 2 subunit family A5904_06735 PF03989 DNA gyrase C-terminal domain, beta-propeller A5904_06735 PF00521 DNA gyrase/topoisomerase IV, subunit A A5904_06740 PF00266 Aminotransferase class-V A5904_06745 PF01842 ACT domain A5904_06745 PF01817 Chorismate mutase type II A5904_06745 PF00800 Prephenate dehydratase A5904_06750 PF00155 Aminotransferase class I and II A5904_06755 PF00793 DAHP synthetase I family A5904_06755 PF18152 DAHP synthase ferredoxin-like domain A5904_06760 PF02153 Prephenate dehydrogenase A5904_06760 PF01842 ACT domain A5904_06765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A5904_06770 PF02224 Cytidylate kinase A5904_06775 PF00575 S1 RNA binding domain A5904_06780 PF00216 Bacterial DNA-binding protein A5904_06785 PF18073 Rubredoxin metal binding domain A5904_06790 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family A5904_06795 PF00156 Phosphoribosyl transferase domain A5904_06800 PF05698 Bacterial trigger factor protein (TF) C-terminus A5904_06800 PF05697 Bacterial trigger factor protein (TF) A5904_06800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A5904_06805 PF00574 Clp protease A5904_06810 PF10431 C-terminal, D2-small domain, of ClpB protein A5904_06810 PF06689 ClpX C4-type zinc finger A5904_06810 PF07724 AAA domain (Cdc48 subfamily) A5904_06815 PF00004 ATPase family associated with various cellular activities (AAA) A5904_06815 PF05362 Lon protease (S16) C-terminal proteolytic domain A5904_06815 PF02190 ATP-dependent protease La (LON) substrate-binding domain A5904_06820 PF00216 Bacterial DNA-binding protein A5904_06835 PF13145 PPIC-type PPIASE domain A5904_06865 PF00563 EAL domain A5904_06865 PF05231 MASE1 A5904_06865 PF08447 PAS fold A5904_06865 PF08448 PAS fold A5904_06865 PF13426 PAS domain A5904_06865 PF00990 Diguanylate cyclase, GGDEF domain A5904_06875 PF07963 Prokaryotic N-terminal methylation motif A5904_06875 PF00114 Pilin (bacterial filament) A5904_06880 PF01610 Transposase A5904_06880 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_06880 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_06885 PF00114 Pilin (bacterial filament) A5904_06885 PF07963 Prokaryotic N-terminal methylation motif A5904_06895 PF00990 Diguanylate cyclase, GGDEF domain A5904_06895 PF00563 EAL domain A5904_06895 PF05231 MASE1 A5904_06895 PF08447 PAS fold A5904_06895 PF08448 PAS fold A5904_06895 PF13426 PAS domain A5904_06905 PF00482 Type II secretion system (T2SS), protein F A5904_06910 PF07963 Prokaryotic N-terminal methylation motif A5904_06910 PF00114 Pilin (bacterial filament) A5904_06940 PF08534 Redoxin A5904_06945 PF00905 Penicillin binding protein transpeptidase domain A5904_06945 PF00912 Transglycosylase A5904_06945 PF17092 Penicillin-binding protein OB-like domain A5904_06950 PF00749 tRNA synthetases class I (E and Q), catalytic domain A5904_06955 PF09190 DALR domain A5904_06955 PF01406 tRNA synthetases class I (C) catalytic domain A5904_06960 PF00575 S1 RNA binding domain A5904_06960 PF12111 Polyribonucleotide phosphorylase C terminal A5904_06960 PF10150 Ribonuclease E/G family A5904_06965 PF01479 S4 domain A5904_06965 PF00849 RNA pseudouridylate synthase A5904_06970 PF13419 Haloacid dehalogenase-like hydrolase A5904_06975 PF00528 Binding-protein-dependent transport system inner membrane component A5904_06980 PF00005 ABC transporter A5904_06990 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_07000 PF00723 Glycosyl hydrolases family 15 A5904_07000 PF09137 Glucodextranase, domain N A5904_07010 PF01343 Peptidase family S49 A5904_07015 PF00248 Aldo/keto reductase family A5904_07030 PF00672 HAMP domain A5904_07030 PF02743 Cache domain A5904_07030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A5904_07035 PF01584 CheW-like domain A5904_07035 PF00072 Response regulator receiver domain A5904_07050 PF07194 P2 response regulator binding domain A5904_07050 PF01627 Hpt domain A5904_07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_07050 PF02895 Signal transducing histidine kinase, homodimeric domain A5904_07050 PF01584 CheW-like domain A5904_07060 PF00072 Response regulator receiver domain A5904_07070 PF00691 OmpA family A5904_07070 PF13677 Membrane MotB of proton-channel complex MotA/MotB A5904_07080 PF02623 FliW protein A5904_07085 PF02599 Global regulator protein family A5904_07100 PF13144 Chaperone for flagella basal body P-ring formation A5904_07100 PF17656 FlgA N-terminal domain A5904_07105 PF00460 Flagella basal body rod protein A5904_07110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A5904_07110 PF00460 Flagella basal body rod protein A5904_07115 PF13861 FlgD Tudor-like domain A5904_07115 PF13860 FlgD Ig-like domain A5904_07115 PF03963 Flagellar hook capping protein - N-terminal region A5904_07120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A5904_07120 PF00460 Flagella basal body rod protein A5904_07120 PF07559 Flagellar basal body protein FlaE A5904_07125 PF00460 Flagella basal body rod protein A5904_07125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A5904_07130 PF00460 Flagella basal body rod protein A5904_07130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A5904_07135 PF02107 Flagellar L-ring protein A5904_07140 PF02119 Flagellar P-ring protein A5904_07145 PF10135 Rod binding protein A5904_07145 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase A5904_07155 PF00460 Flagella basal body rod protein A5904_07155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal A5904_07160 PF00669 Bacterial flagellin N-terminal helical region A5904_07165 PF00535 Glycosyl transferase family 2 A5904_07170 PF00669 Bacterial flagellin N-terminal helical region A5904_07170 PF00700 Bacterial flagellin C-terminal helical region A5904_07185 PF02561 Flagellar protein FliS A5904_07195 PF02954 Bacterial regulatory protein, Fis family A5904_07195 PF01590 GAF domain A5904_07195 PF00158 Sigma-54 interaction domain A5904_07200 PF00512 His Kinase A (phospho-acceptor) domain A5904_07200 PF00989 PAS fold A5904_07200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_07205 PF00072 Response regulator receiver domain A5904_07205 PF00158 Sigma-54 interaction domain A5904_07205 PF02954 Bacterial regulatory protein, Fis family A5904_07215 PF01514 Secretory protein of YscJ/FliF family A5904_07215 PF08345 Flagellar M-ring protein C-terminal A5904_07220 PF01706 FliG C-terminal domain A5904_07220 PF14841 FliG middle domain A5904_07220 PF14842 FliG N-terminal domain A5904_07230 PF18269 T3SS EscN ATPase C-terminal domain A5904_07230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A5904_07245 PF02154 Flagellar motor switch protein FliM A5904_07245 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A5904_07250 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term A5904_07255 PF04347 Flagellar biosynthesis protein, FliO A5904_07260 PF00813 FliP family A5904_07265 PF01313 Bacterial export proteins, family 3 A5904_07270 PF01311 Bacterial export proteins, family 1 A5904_07275 PF01312 FlhB HrpN YscU SpaS Family A5904_07280 PF00771 FHIPEP family A5904_07285 PF00448 SRP54-type protein, GTPase domain A5904_07290 PF10609 NUBPL iron-transfer P-loop NTPase A5904_07295 PF04545 Sigma-70, region 4 A5904_07295 PF04539 Sigma-70 region 3 A5904_07295 PF04542 Sigma-70 region 2 A5904_07300 PF01618 MotA/TolQ/ExbB proton channel family A5904_07305 PF05192 MutS domain III A5904_07305 PF00488 MutS domain V A5904_07305 PF05188 MutS domain II A5904_07305 PF01624 MutS domain I A5904_07305 PF05190 MutS family domain IV A5904_07310 PF01027 Inhibitor of apoptosis-promoting Bax1 A5904_07325 PF00488 MutS domain V A5904_07325 PF01713 Smr domain A5904_07330 PF02913 FAD linked oxidases, C-terminal domain A5904_07330 PF01565 FAD binding domain A5904_07335 PF02569 Pantoate-beta-alanine ligase A5904_07340 PF02548 Ketopantoate hydroxymethyltransferase A5904_07345 PF01712 Deoxynucleoside kinase A5904_07350 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) A5904_07355 PF01743 Poly A polymerase head domain A5904_07355 PF12626 Polymerase A arginine-rich C-terminus A5904_07355 PF12627 Probable RNA and SrmB- binding site of polymerase A A5904_07360 PF00571 CBS domain A5904_07360 PF00478 IMP dehydrogenase / GMP reductase domain A5904_07365 PF02540 NAD synthase A5904_07365 PF00958 GMP synthase C terminal domain A5904_07365 PF00117 Glutamine amidotransferase class-I A5904_07395 PF00027 Cyclic nucleotide-binding domain A5904_07395 PF13545 Crp-like helix-turn-helix domain A5904_07400 PF00970 Oxidoreductase FAD-binding domain A5904_07400 PF00175 Oxidoreductase NAD-binding domain A5904_07400 PF00042 Globin A5904_07405 PF00970 Oxidoreductase FAD-binding domain A5904_07405 PF00175 Oxidoreductase NAD-binding domain A5904_07405 PF00111 2Fe-2S iron-sulfur cluster binding domain A5904_07420 PF04343 Protein of unknown function, DUF488 A5904_07425 PF07690 Major Facilitator Superfamily A5904_07435 PF00654 Voltage gated chloride channel A5904_07440 PF00654 Voltage gated chloride channel A5904_07445 PF07690 Major Facilitator Superfamily A5904_07450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_07450 PF03466 LysR substrate binding domain A5904_07455 PF16177 Acetyl-coenzyme A synthetase N-terminus A5904_07455 PF00501 AMP-binding enzyme A5904_07455 PF13193 AMP-binding enzyme C-terminal domain A5904_07460 PF11897 Protein of unknown function (DUF3417) A5904_07460 PF00343 Carbohydrate phosphorylase A5904_07465 PF02887 Pyruvate kinase, alpha/beta domain A5904_07465 PF00224 Pyruvate kinase, barrel domain A5904_07465 PF00391 PEP-utilising enzyme, mobile domain A5904_07475 PF18113 Rubredoxin binding C-terminal domain A5904_07475 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_07480 PF00294 pfkB family carbohydrate kinase A5904_07485 PF01515 Phosphate acetyl/butaryl transferase A5904_07520 PF01566 Natural resistance-associated macrophage protein A5904_07525 PF02308 MgtC family A5904_07545 PF05973 Phage derived protein Gp49-like (DUF891) A5904_07550 PF01381 Helix-turn-helix A5904_07555 PF13091 PLD-like domain A5904_07560 PF00990 Diguanylate cyclase, GGDEF domain A5904_07565 PF00990 Diguanylate cyclase, GGDEF domain A5904_07565 PF08448 PAS fold A5904_07595 PF01610 Transposase A5904_07595 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_07595 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_07600 PF13677 Membrane MotB of proton-channel complex MotA/MotB A5904_07600 PF00691 OmpA family A5904_07605 PF00990 Diguanylate cyclase, GGDEF domain A5904_07605 PF13185 GAF domain A5904_07605 PF00563 EAL domain A5904_07625 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_07625 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_07625 PF01610 Transposase A5904_07650 PF01695 IstB-like ATP binding protein A5904_07655 PF00665 Integrase core domain A5904_07685 PF01464 Transglycosylase SLT domain A5904_07690 PF02534 Type IV secretory system Conjugative DNA transfer A5904_07705 PF07690 Major Facilitator Superfamily A5904_07720 PF00873 AcrB/AcrD/AcrF family A5904_07725 PF13533 Biotin-lipoyl like A5904_07745 PF00486 Transcriptional regulatory protein, C terminal A5904_07745 PF00072 Response regulator receiver domain A5904_07750 PF00512 His Kinase A (phospho-acceptor) domain A5904_07750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_07750 PF00672 HAMP domain A5904_07760 PF00872 Transposase, Mutator family A5904_07790 PF01609 Transposase DDE domain A5904_07790 PF05598 Transposase domain (DUF772) A5904_07805 PF13360 PQQ-like domain A5904_07805 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A5904_07815 PF01654 Cytochrome bd terminal oxidase subunit I A5904_07820 PF02322 Cytochrome bd terminal oxidase subunit II A5904_07830 PF00384 Molybdopterin oxidoreductase A5904_07830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A5904_07830 PF01568 Molydopterin dinucleotide binding domain A5904_07845 PF12800 4Fe-4S binding domain A5904_07845 PF13247 4Fe-4S dicluster domain A5904_07850 PF04976 DMSO reductase anchor subunit (DmsC) A5904_07880 PF04055 Radical SAM superfamily A5904_07880 PF06463 Molybdenum Cofactor Synthesis C A5904_07900 PF05717 IS66 Orf2 like protein A5904_07905 PF13005 zinc-finger binding domain of transposase IS66 A5904_07905 PF03050 Transposase IS66 family A5904_07905 PF13007 Transposase C of IS166 homeodomain A5904_07905 PF13817 IS66 C-terminal element A5904_07965 PF01464 Transglycosylase SLT domain A5904_07990 PF00535 Glycosyl transferase family 2 A5904_08015 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_08015 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_08015 PF01610 Transposase A5904_08050 PF03050 Transposase IS66 family A5904_08050 PF13817 IS66 C-terminal element A5904_08050 PF13005 zinc-finger binding domain of transposase IS66 A5904_08050 PF13007 Transposase C of IS166 homeodomain A5904_08055 PF05717 IS66 Orf2 like protein A5904_08065 PF00324 Amino acid permease A5904_08070 PF01610 Transposase A5904_08070 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_08070 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_08080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A5904_08085 PF00873 AcrB/AcrD/AcrF family A5904_08110 PF07690 Major Facilitator Superfamily A5904_08115 PF00034 Cytochrome c A5904_08130 PF01370 NAD dependent epimerase/dehydratase family A5904_08135 PF01370 NAD dependent epimerase/dehydratase family A5904_08140 PF02254 TrkA-N domain A5904_08140 PF02080 TrkA-C domain A5904_08140 PF00999 Sodium/hydrogen exchanger family A5904_08145 PF01557 Fumarylacetoacetate (FAA) hydrolase family A5904_08150 PF00384 Molybdopterin oxidoreductase A5904_08155 PF02634 FdhD/NarQ family A5904_08160 PF17810 Arginine decarboxylase helical bundle domain A5904_08160 PF17944 Arginine decarboxylase C-terminal helical extension A5904_08160 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A5904_08165 PF13638 PIN domain A5904_08165 PF02562 PhoH-like protein A5904_08170 PF00578 AhpC/TSA family A5904_08185 PF13419 Haloacid dehalogenase-like hydrolase A5904_08190 PF01258 Prokaryotic dksA/traR C4-type zinc finger A5904_08210 PF08406 CbbQ/NirQ/NorQ C-terminal A5904_08210 PF07728 AAA domain (dynein-related subfamily) A5904_08215 PF00092 von Willebrand factor type A domain A5904_08225 PF00361 Proton-conducting membrane transporter A5904_08230 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_08230 PF01610 Transposase A5904_08230 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_08250 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A5904_08250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A5904_08250 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A5904_08255 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A5904_08260 PF03466 LysR substrate binding domain A5904_08260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_08270 PF00282 Pyridoxal-dependent decarboxylase conserved domain A5904_08275 PF02441 Flavoprotein A5904_08280 PF08245 Mur ligase middle domain A5904_08280 PF01225 Mur ligase family, catalytic domain A5904_08280 PF02875 Mur ligase family, glutamate ligase domain A5904_08290 PF05690 Thiazole biosynthesis protein ThiG A5904_08315 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A5904_08315 PF01411 tRNA synthetases class II (A) A5904_08315 PF02272 DHHA1 domain A5904_08320 PF02631 RecX family A5904_08325 PF00154 recA bacterial DNA recombination protein A5904_08330 PF00994 Probable molybdopterin binding domain A5904_08330 PF02464 Competence-damaged protein A5904_08335 PF02769 AIR synthase related protein, C-terminal domain A5904_08335 PF00586 AIR synthase related protein, N-terminal domain A5904_08340 PF00749 tRNA synthetases class I (E and Q), catalytic domain A5904_08355 PF17746 SfsA N-terminal OB domain A5904_08355 PF03749 Sugar fermentation stimulation protein RE domain A5904_08360 PF00557 Metallopeptidase family M24 A5904_08365 PF08335 GlnD PII-uridylyltransferase A5904_08365 PF01966 HD domain A5904_08365 PF01842 ACT domain A5904_08365 PF01909 Nucleotidyltransferase domain A5904_08370 PF04356 Protein of unknown function (DUF489) A5904_08380 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A5904_08380 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain A5904_08385 PF12826 Helix-hairpin-helix motif A5904_08385 PF00533 BRCA1 C Terminus (BRCT) domain A5904_08385 PF03120 NAD-dependent DNA ligase OB-fold domain A5904_08385 PF03119 NAD-dependent DNA ligase C4 zinc finger domain A5904_08385 PF01653 NAD-dependent DNA ligase adenylation domain A5904_08395 PF06470 SMC proteins Flexible Hinge Domain A5904_08395 PF02463 RecF/RecN/SMC N terminal domain A5904_08400 PF14489 QueF-like protein A5904_08405 PF01266 FAD dependent oxidoreductase A5904_08415 PF00849 RNA pseudouridylate synthase A5904_08415 PF01479 S4 domain A5904_08420 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_08425 PF04079 Segregation and condensation complex subunit ScpB A5904_08430 PF02616 Segregation and condensation protein ScpA A5904_08435 PF00579 tRNA synthetases class I (W and Y) A5904_08440 PF02163 Peptidase family M50 A5904_08445 PF01300 Telomere recombination A5904_08450 PF06508 Queuosine biosynthesis protein QueC A5904_08460 PF12794 Mechanosensitive ion channel inner membrane domain 1 A5904_08460 PF12795 Mechanosensitive ion channel porin domain A5904_08460 PF00924 Mechanosensitive ion channel A5904_08465 PF01472 PUA domain A5904_08465 PF00696 Amino acid kinase family A5904_08490 PF00512 His Kinase A (phospho-acceptor) domain A5904_08490 PF00989 PAS fold A5904_08490 PF00072 Response regulator receiver domain A5904_08490 PF00497 Bacterial extracellular solute-binding proteins, family 3 A5904_08490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_08490 PF01627 Hpt domain A5904_08495 PF07733 Bacterial DNA polymerase III alpha NTPase domain A5904_08495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A5904_08495 PF14579 Helix-hairpin-helix motif A5904_08495 PF02811 PHP domain A5904_08495 PF01336 OB-fold nucleic acid binding domain A5904_08510 PF01726 LexA DNA binding domain A5904_08510 PF00717 Peptidase S24-like A5904_08520 PF03458 UPF0126 domain A5904_08525 PF00403 Heavy-metal-associated domain A5904_08525 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_08525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A5904_08530 PF00376 MerR family regulatory protein A5904_08530 PF09278 MerR, DNA binding A5904_08535 PF00534 Glycosyl transferases group 1 A5904_08535 PF00862 Sucrose synthase A5904_08540 PF00534 Glycosyl transferases group 1 A5904_08540 PF00862 Sucrose synthase A5904_08545 PF00294 pfkB family carbohydrate kinase A5904_08555 PF00528 Binding-protein-dependent transport system inner membrane component A5904_08560 PF00528 Binding-protein-dependent transport system inner membrane component A5904_08565 PF12849 PBP superfamily domain A5904_08570 PF01687 Riboflavin kinase A5904_08570 PF06574 FAD synthetase A5904_08575 PF00133 tRNA synthetases class I (I, L, M and V) A5904_08575 PF06827 Zinc finger found in FPG and IleRS A5904_08575 PF08264 Anticodon-binding domain of tRNA A5904_08580 PF01252 Signal peptidase (SPase) II A5904_08600 PF06472 ABC transporter transmembrane region 2 A5904_08600 PF00005 ABC transporter A5904_08610 PF00795 Carbon-nitrogen hydrolase A5904_08615 PF11741 AMIN domain A5904_08615 PF01520 N-acetylmuramoyl-L-alanine amidase A5904_08620 PF00085 Thioredoxin A5904_08625 PF00462 Glutaredoxin A5904_08630 PF01206 Sulfurtransferase TusA A5904_08630 PF00581 Rhodanese-like domain A5904_08640 PF00873 AcrB/AcrD/AcrF family A5904_08655 PF01022 Bacterial regulatory protein, arsR family A5904_08665 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase A5904_08680 PF00899 ThiF family A5904_08685 PF01026 TatD related DNase A5904_08690 PF01494 FAD binding domain A5904_08695 PF01494 FAD binding domain A5904_08700 PF04380 Membrane fusogenic activity A5904_08705 PF01078 Magnesium chelatase, subunit ChlI A5904_08705 PF13335 Magnesium chelatase, subunit ChlI C-terminal A5904_08715 PF01066 CDP-alcohol phosphatidyltransferase A5904_08720 PF02666 Phosphatidylserine decarboxylase A5904_08725 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain A5904_08725 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain A5904_08730 PF10369 Small subunit of acetolactate synthase A5904_08735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A5904_08735 PF00205 Thiamine pyrophosphate enzyme, central domain A5904_08735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A5904_08740 PF00488 MutS domain V A5904_08740 PF01713 Smr domain A5904_08750 PF01894 Uncharacterised protein family UPF0047 A5904_08755 PF14437 MafB19-like deaminase A5904_08780 PF00263 Bacterial type II and III secretion system protein A5904_08780 PF07660 Secretin and TonB N terminus short domain A5904_08780 PF03958 Bacterial type II/III secretion system short domain A5904_08780 PF11741 AMIN domain A5904_08785 PF01202 Shikimate kinase A5904_08790 PF01761 3-dehydroquinate synthase A5904_08795 PF02511 Thymidylate synthase complementing protein A5904_08800 PF01966 HD domain A5904_08800 PF13286 Phosphohydrolase-associated domain A5904_08805 PF01645 Conserved region in glutamate synthase A5904_08805 PF00310 Glutamine amidotransferases class-II A5904_08805 PF04898 Glutamate synthase central domain A5904_08805 PF01493 GXGXG motif A5904_08810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster A5904_08810 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_08815 PF01208 Uroporphyrinogen decarboxylase (URO-D) A5904_08820 PF01553 Acyltransferase A5904_08830 PF00709 Adenylosuccinate synthetase A5904_08835 PF13393 Histidyl-tRNA synthetase A5904_08840 PF01145 SPFH domain / Band 7 family A5904_08845 PF12221 Bacterial membrane protein N terminal A5904_08845 PF01145 SPFH domain / Band 7 family A5904_08850 PF13167 GTP-binding GTPase N-terminal A5904_08850 PF16360 GTP-binding GTPase Middle Region A5904_08850 PF01926 50S ribosome-binding GTPase A5904_08855 PF17209 Hfq protein A5904_08860 PF00311 Phosphoenolpyruvate carboxylase A5904_08865 PF02545 Maf-like protein A5904_08890 PF01610 Transposase A5904_08890 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_08890 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_08905 PF01610 Transposase A5904_08905 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_08905 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_08930 PF13817 IS66 C-terminal element A5904_08930 PF13005 zinc-finger binding domain of transposase IS66 A5904_08930 PF13007 Transposase C of IS166 homeodomain A5904_08930 PF03050 Transposase IS66 family A5904_08935 PF05717 IS66 Orf2 like protein A5904_08970 PF02627 Carboxymuconolactone decarboxylase family A5904_09050 PF00535 Glycosyl transferase family 2 A5904_09070 PF01844 HNH endonuclease A5904_09090 PF03073 TspO/MBR family A5904_09105 PF01066 CDP-alcohol phosphatidyltransferase A5904_09110 PF02151 UvrB/uvrC motif A5904_09110 PF01541 GIY-YIG catalytic domain A5904_09110 PF08459 UvrC Helix-hairpin-helix N-terminal A5904_09120 PF08207 Elongation factor P (EF-P) KOW-like domain A5904_09120 PF01132 Elongation factor P (EF-P) OB domain A5904_09120 PF09285 Elongation factor P, C-terminal A5904_09130 PF04977 Septum formation initiator A5904_09135 PF03952 Enolase, N-terminal domain A5904_09135 PF00113 Enolase, C-terminal TIM barrel domain A5904_09140 PF00793 DAHP synthetase I family A5904_09145 PF06418 CTP synthase N-terminus A5904_09145 PF00117 Glutamine amidotransferase class-I A5904_09150 PF17757 UvrB interaction domain A5904_09150 PF12344 Ultra-violet resistance protein B A5904_09150 PF02151 UvrB/uvrC motif A5904_09150 PF04851 Type III restriction enzyme, res subunit A5904_09150 PF00271 Helicase conserved C-terminal domain A5904_09260 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_09260 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_09260 PF01610 Transposase A5904_09340 PF00271 Helicase conserved C-terminal domain A5904_09340 PF00270 DEAD/DEAH box helicase A5904_09355 PF00543 Nitrogen regulatory protein P-II A5904_09360 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain A5904_09360 PF00117 Glutamine amidotransferase class-I A5904_09370 PF00909 Ammonium Transporter Family A5904_09375 PF00543 Nitrogen regulatory protein P-II A5904_09390 PF03951 Glutamine synthetase, beta-Grasp domain A5904_09390 PF00120 Glutamine synthetase, catalytic domain A5904_09400 PF00158 Sigma-54 interaction domain A5904_09400 PF00072 Response regulator receiver domain A5904_09400 PF02954 Bacterial regulatory protein, Fis family A5904_09405 PF00989 PAS fold A5904_09405 PF00512 His Kinase A (phospho-acceptor) domain A5904_09405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_09475 PF02583 Metal-sensitive transcriptional repressor A5904_09485 PF00873 AcrB/AcrD/AcrF family A5904_09520 PF00403 Heavy-metal-associated domain A5904_09530 PF00403 Heavy-metal-associated domain A5904_09575 PF01209 ubiE/COQ5 methyltransferase family A5904_09590 PF00753 Metallo-beta-lactamase superfamily A5904_09590 PF00581 Rhodanese-like domain A5904_09600 PF07690 Major Facilitator Superfamily A5904_09645 PF13545 Crp-like helix-turn-helix domain A5904_09645 PF00027 Cyclic nucleotide-binding domain A5904_09650 PF00970 Oxidoreductase FAD-binding domain A5904_09650 PF00042 Globin A5904_09650 PF00175 Oxidoreductase NAD-binding domain A5904_09655 PF00175 Oxidoreductase NAD-binding domain A5904_09655 PF00111 2Fe-2S iron-sulfur cluster binding domain A5904_09655 PF00970 Oxidoreductase FAD-binding domain A5904_09670 PF01597 Glycine cleavage H-protein A5904_09695 PF03595 Voltage-dependent anion channel A5904_09700 PF00043 Glutathione S-transferase, C-terminal domain A5904_09700 PF02798 Glutathione S-transferase, N-terminal domain A5904_09705 PF00037 4Fe-4S binding domain A5904_09705 PF11953 Domain of unknown function (DUF3470) A5904_09720 PF01568 Molydopterin dinucleotide binding domain A5904_09720 PF14710 Respiratory nitrate reductase alpha N-terminal A5904_09720 PF00384 Molybdopterin oxidoreductase A5904_09725 PF13247 4Fe-4S dicluster domain A5904_09725 PF14711 Respiratory nitrate reductase beta C-terminal A5904_09730 PF02613 Nitrate reductase delta subunit A5904_09735 PF02665 Nitrate reductase gamma subunit A5904_09745 PF07690 Major Facilitator Superfamily A5904_09750 PF04343 Protein of unknown function, DUF488 A5904_09755 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_09755 PF14759 Reductase C-terminal A5904_09760 PF13533 Biotin-lipoyl like A5904_09775 PF00665 Integrase core domain A5904_09780 PF01695 IstB-like ATP binding protein A5904_09785 PF02321 Outer membrane efflux protein A5904_09790 PF07690 Major Facilitator Superfamily A5904_09815 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_09815 PF01610 Transposase A5904_09815 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_09825 PF01610 Transposase A5904_09825 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_09825 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_09845 PF01026 TatD related DNase A5904_09850 PF00588 SpoU rRNA Methylase family A5904_09850 PF08032 RNA 2'-O ribose methyltransferase substrate binding A5904_09860 PF01594 AI-2E family transporter A5904_09865 PF02811 PHP domain A5904_09875 PF01594 AI-2E family transporter A5904_09890 PF00270 DEAD/DEAH box helicase A5904_09890 PF00271 Helicase conserved C-terminal domain A5904_09890 PF17191 RecG wedge domain A5904_09900 PF01042 Endoribonuclease L-PSP A5904_09905 PF13291 ACT domain A5904_09905 PF02824 TGS domain A5904_09905 PF04607 Region found in RelA / SpoT proteins A5904_09910 PF01192 RNA polymerase Rpb6 A5904_09915 PF00625 Guanylate kinase A5904_09920 PF03755 YicC-like family, N-terminal region A5904_09920 PF08340 Domain of unknown function (DUF1732) A5904_09925 PF08335 GlnD PII-uridylyltransferase A5904_09925 PF03710 Glutamate-ammonia ligase adenylyltransferase A5904_09930 PF01063 Amino-transferase class IV A5904_09940 PF11412 Disulphide bond corrector protein DsbC A5904_09940 PF02683 Cytochrome C biogenesis protein transmembrane region A5904_09945 PF03091 CutA1 divalent ion tolerance protein A5904_09950 PF03707 Bacterial signalling protein N terminal repeat A5904_09950 PF00990 Diguanylate cyclase, GGDEF domain A5904_09950 PF00563 EAL domain A5904_10005 PF02537 CrcB-like protein, Camphor Resistance (CrcB) A5904_10015 PF00589 Phage integrase family A5904_10115 PF02321 Outer membrane efflux protein A5904_10120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A5904_10125 PF00873 AcrB/AcrD/AcrF family A5904_10130 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain A5904_10130 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain A5904_10135 PF02503 Polyphosphate kinase middle domain A5904_10135 PF13090 Polyphosphate kinase C-terminal domain 2 A5904_10135 PF17941 Polyphosphate kinase C-terminal domain 1 A5904_10135 PF13089 Polyphosphate kinase N-terminal domain A5904_10145 PF01928 CYTH domain A5904_10155 PF11940 Domain of unknown function (DUF3458) Ig-like fold A5904_10155 PF01433 Peptidase family M1 domain A5904_10155 PF17432 Domain of unknown function (DUF3458_C) ARM repeats A5904_10160 PF13098 Thioredoxin-like domain A5904_10165 PF10431 C-terminal, D2-small domain, of ClpB protein A5904_10165 PF02861 Clp amino terminal domain, pathogenicity island component A5904_10165 PF17871 AAA lid domain A5904_10165 PF07724 AAA domain (Cdc48 subfamily) A5904_10165 PF00004 ATPase family associated with various cellular activities (AAA) A5904_10170 PF03825 Nucleoside H+ symporter A5904_10175 PF01264 Chorismate synthase A5904_10180 PF02649 Type I GTP cyclohydrolase folE2 A5904_10185 PF02780 Transketolase, C-terminal domain A5904_10185 PF13292 1-deoxy-D-xylulose-5-phosphate synthase A5904_10185 PF02779 Transketolase, pyrimidine binding domain A5904_10190 PF00348 Polyprenyl synthetase A5904_10195 PF02609 Exonuclease VII small subunit A5904_10200 PF02355 Protein export membrane protein A5904_10200 PF07549 SecD/SecF GG Motif A5904_10205 PF02355 Protein export membrane protein A5904_10205 PF13721 SecD export protein N-terminal TM region A5904_10205 PF07549 SecD/SecF GG Motif A5904_10210 PF02699 Preprotein translocase subunit A5904_10215 PF01702 Queuine tRNA-ribosyltransferase A5904_10220 PF02547 Queuosine biosynthesis protein A5904_10225 PF03471 Transporter associated domain A5904_10225 PF01595 Cyclin M transmembrane N-terminal domain A5904_10225 PF00571 CBS domain A5904_10235 PF01053 Cys/Met metabolism PLP-dependent enzyme A5904_10240 PF13537 Glutamine amidotransferase domain A5904_10240 PF00156 Phosphoribosyl transferase domain A5904_10250 PF08245 Mur ligase middle domain A5904_10250 PF02875 Mur ligase family, glutamate ligase domain A5904_10255 PF17848 Acetyl-coA carboxylase zinc finger domain A5904_10255 PF01039 Carboxyl transferase domain A5904_10260 PF00290 Tryptophan synthase alpha chain A5904_10265 PF00291 Pyridoxal-phosphate dependent enzyme A5904_10270 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase A5904_10275 PF01416 tRNA pseudouridine synthase A5904_10285 PF02774 Semialdehyde dehydrogenase, dimerisation domain A5904_10285 PF01118 Semialdehyde dehydrogenase, NAD binding domain A5904_10290 PF00180 Isocitrate/isopropylmalate dehydrogenase A5904_10300 PF12804 MobA-like NTP transferase domain A5904_10305 PF03205 Molybdopterin guanine dinucleotide synthesis protein B A5904_10310 PF03454 MoeA C-terminal region (domain IV) A5904_10310 PF03453 MoeA N-terminal region (domain I and II) A5904_10310 PF00994 Probable molybdopterin binding domain A5904_10315 PF13091 PLD-like domain A5904_10330 PF13419 Haloacid dehalogenase-like hydrolase A5904_10340 PF00872 Transposase, Mutator family A5904_10355 PF02322 Cytochrome bd terminal oxidase subunit II A5904_10360 PF01654 Cytochrome bd terminal oxidase subunit I A5904_10385 PF00005 ABC transporter A5904_10405 PF07690 Major Facilitator Superfamily A5904_10410 PF00582 Universal stress protein family A5904_10420 PF02769 AIR synthase related protein, C-terminal domain A5904_10420 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain A5904_10420 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal A5904_10425 PF01259 SAICAR synthetase A5904_10430 PF00206 Lyase A5904_10430 PF10397 Adenylosuccinate lyase C-terminus A5904_10440 PF00701 Dihydrodipicolinate synthetase family A5904_10450 PF00166 Chaperonin 10 Kd subunit A5904_10455 PF00118 TCP-1/cpn60 chaperonin family A5904_10460 PF00156 Phosphoribosyl transferase domain A5904_10465 PF01747 ATP-sulfurylase A5904_10465 PF14306 PUA-like domain A5904_10475 PF01578 Cytochrome C assembly protein A5904_10490 PF05140 ResB-like family A5904_10525 PF00510 Cytochrome c oxidase subunit III A5904_10530 PF00115 Cytochrome C and Quinol oxidase polypeptide I A5904_10535 PF06481 COX Aromatic Rich Motif A5904_10535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain A5904_10540 PF01695 IstB-like ATP binding protein A5904_10545 PF00665 Integrase core domain A5904_10550 PF01695 IstB-like ATP binding protein A5904_10555 PF00665 Integrase core domain A5904_10565 PF02637 GatB domain A5904_10565 PF02934 GatB/GatE catalytic domain A5904_10570 PF01425 Amidase A5904_10575 PF02686 Glu-tRNAGln amidotransferase C subunit A5904_10585 PF05494 MlaC protein A5904_10590 PF04055 Radical SAM superfamily A5904_10590 PF06463 Molybdenum Cofactor Synthesis C A5904_10610 PF04794 YdjC-like protein A5904_10615 PF00919 Uncharacterized protein family UPF0004 A5904_10615 PF01938 TRAM domain A5904_10615 PF04055 Radical SAM superfamily A5904_10625 PF01370 NAD dependent epimerase/dehydratase family A5904_10635 PF13243 Squalene-hopene cyclase C-terminal domain A5904_10635 PF13249 Squalene-hopene cyclase N-terminal domain A5904_10645 PF00005 ABC transporter A5904_10660 PF00005 ABC transporter A5904_10680 PF00899 ThiF family A5904_10695 PF02405 Permease MlaE A5904_10700 PF00005 ABC transporter A5904_10705 PF02321 Outer membrane efflux protein A5904_10710 PF04715 Anthranilate synthase component I, N terminal region A5904_10710 PF00425 chorismate binding enzyme A5904_10715 PF00128 Alpha amylase, catalytic domain A5904_10715 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) A5904_10750 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system A5904_10755 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system A5904_10765 PF04542 Sigma-70 region 2 A5904_10765 PF04545 Sigma-70, region 4 A5904_10765 PF00140 Sigma-70 factor, region 1.2 A5904_10765 PF04539 Sigma-70 region 3 A5904_10765 PF04546 Sigma-70, non-essential region A5904_10765 PF03979 Sigma-70 factor, region 1.1 A5904_10770 PF10410 DnaB-helicase binding domain of primase A5904_10770 PF08278 DNA primase DnaG DnaB-binding A5904_10770 PF13662 Toprim domain A5904_10770 PF01807 CHC2 zinc finger A5904_10770 PF08275 DNA primase catalytic core, N-terminal domain A5904_10775 PF00488 MutS domain V A5904_10775 PF01713 Smr domain A5904_10780 PF09424 Yqey-like protein A5904_10785 PF01165 Ribosomal protein S21 A5904_10790 PF04545 Sigma-70, region 4 A5904_10790 PF04539 Sigma-70 region 3 A5904_10790 PF04542 Sigma-70 region 2 A5904_10790 PF00140 Sigma-70 factor, region 1.2 A5904_10795 PF01725 Ham1 family A5904_10800 PF03725 3' exoribonuclease family, domain 2 A5904_10800 PF01138 3' exoribonuclease family, domain 1 A5904_10810 PF00183 Hsp90 protein A5904_10810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_10815 PF04241 Protein of unknown function (DUF423) A5904_10840 PF04349 Periplasmic glucan biosynthesis protein, MdoG A5904_10845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A5904_10845 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_10855 PF00158 Sigma-54 interaction domain A5904_10855 PF00072 Response regulator receiver domain A5904_10855 PF02954 Bacterial regulatory protein, Fis family A5904_10860 PF00753 Metallo-beta-lactamase superfamily A5904_10860 PF16123 Hydroxyacylglutathione hydrolase C-terminus A5904_10865 PF01654 Cytochrome bd terminal oxidase subunit I A5904_10870 PF02322 Cytochrome bd terminal oxidase subunit II A5904_10885 PF13667 ThiC-associated domain A5904_10885 PF01964 Radical SAM ThiC family A5904_10905 PF01430 Hsp33 protein A5904_10910 PF01171 PP-loop family A5904_10915 PF01467 Cytidylyltransferase-like A5904_10915 PF00294 pfkB family carbohydrate kinase A5904_10920 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A5904_10920 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A5904_10920 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A5904_10925 PF01648 4'-phosphopantetheinyl transferase superfamily A5904_10930 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ A5904_10935 PF11967 Recombination protein O N terminal A5904_10935 PF02565 Recombination protein O C terminal A5904_10940 PF07650 KH domain A5904_10940 PF01926 50S ribosome-binding GTPase A5904_10945 PF14622 Ribonuclease-III-like A5904_10945 PF00035 Double-stranded RNA binding motif A5904_10955 PF10502 Signal peptidase, peptidase S26 A5904_10960 PF00679 Elongation factor G C-terminus A5904_10960 PF00009 Elongation factor Tu GTP binding domain A5904_10960 PF03144 Elongation factor Tu domain 2 A5904_10960 PF06421 GTP-binding protein LepA C-terminus A5904_10965 PF13180 PDZ domain A5904_10975 PF04542 Sigma-70 region 2 A5904_10975 PF08281 Sigma-70, region 4 A5904_10980 PF02910 Fumarate reductase flavoprotein C-term A5904_10980 PF00890 FAD binding domain A5904_10985 PF01571 Aminomethyltransferase folate-binding domain A5904_10995 PF00005 ABC transporter A5904_10995 PF00664 ABC transporter transmembrane region A5904_11000 PF00005 ABC transporter A5904_11000 PF00664 ABC transporter transmembrane region A5904_11015 PF00009 Elongation factor Tu GTP binding domain A5904_11015 PF03144 Elongation factor Tu domain 2 A5904_11015 PF16658 Class II release factor RF3, C-terminal domain A5904_11025 PF00814 Glycoprotease family A5904_11030 PF13307 Helicase C-terminal domain A5904_11030 PF04851 Type III restriction enzyme, res subunit A5904_11040 PF01578 Cytochrome C assembly protein A5904_11045 PF00877 NlpC/P60 family A5904_11065 PF00795 Carbon-nitrogen hydrolase A5904_11075 PF09335 SNARE associated Golgi protein A5904_11105 PF00850 Histone deacetylase domain A5904_11115 PF08406 CbbQ/NirQ/NorQ C-terminal A5904_11115 PF07728 AAA domain (dynein-related subfamily) A5904_11155 PF01494 FAD binding domain A5904_11160 PF10437 Bacterial lipoate protein ligase C-terminus A5904_11160 PF03099 Biotin/lipoate A/B protein ligase family A5904_11170 PF01597 Glycine cleavage H-protein A5904_11180 PF01597 Glycine cleavage H-protein A5904_11185 PF02754 Cysteine-rich domain A5904_11200 PF01593 Flavin containing amine oxidoreductase A5904_11215 PF13686 DsrE/DsrF/DrsH-like family A5904_11220 PF01206 Sulfurtransferase TusA A5904_11225 PF00581 Rhodanese-like domain A5904_11230 PF04055 Radical SAM superfamily A5904_11230 PF06463 Molybdenum Cofactor Synthesis C A5904_11235 PF04976 DMSO reductase anchor subunit (DmsC) A5904_11240 PF12800 4Fe-4S binding domain A5904_11240 PF13247 4Fe-4S dicluster domain A5904_11250 PF00384 Molybdopterin oxidoreductase A5904_11250 PF01568 Molydopterin dinucleotide binding domain A5904_11250 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A5904_11260 PF01967 MoaC family A5904_11270 PF00672 HAMP domain A5904_11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_11270 PF00989 PAS fold A5904_11270 PF00512 His Kinase A (phospho-acceptor) domain A5904_11275 PF00158 Sigma-54 interaction domain A5904_11275 PF02954 Bacterial regulatory protein, Fis family A5904_11275 PF00072 Response regulator receiver domain A5904_11280 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP A5904_11280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III A5904_11280 PF00034 Cytochrome c A5904_11300 PF03625 Domain of unknown function DUF302 A5904_11305 PF02872 5'-nucleotidase, C-terminal domain A5904_11305 PF00149 Calcineurin-like phosphoesterase A5904_11315 PF04085 rod shape-determining protein MreC A5904_11325 PF03717 Penicillin-binding Protein dimerisation domain A5904_11325 PF00905 Penicillin binding protein transpeptidase domain A5904_11330 PF01098 Cell cycle protein A5904_11335 PF00768 D-alanyl-D-alanine carboxypeptidase A5904_11335 PF07943 Penicillin-binding protein 5, C-terminal domain A5904_11345 PF03099 Biotin/lipoate A/B protein ligase family A5904_11350 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family A5904_11350 PF04055 Radical SAM superfamily A5904_11395 PF02091 Glycyl-tRNA synthetase alpha subunit A5904_11400 PF02092 Glycyl-tRNA synthetase beta subunit A5904_11415 PF18030 RimK PreATP-grasp domain A5904_11415 PF08443 RimK-like ATP-grasp domain A5904_11440 PF08534 Redoxin A5904_11445 PF01329 Pterin 4 alpha carbinolamine dehydratase A5904_11450 PF02677 Epoxyqueuosine reductase QueH A5904_11460 PF01510 N-acetylmuramoyl-L-alanine amidase A5904_11470 PF10417 C-terminal domain of 1-Cys peroxiredoxin A5904_11470 PF00578 AhpC/TSA family A5904_11475 PF08502 LeuA allosteric (dimerisation) domain A5904_11475 PF00682 HMGL-like A5904_11480 PF03618 Kinase/pyrophosphorylase A5904_11510 PF05598 Transposase domain (DUF772) A5904_11510 PF01609 Transposase DDE domain A5904_11515 PF02754 Cysteine-rich domain A5904_11515 PF13183 4Fe-4S dicluster domain A5904_11520 PF01565 FAD binding domain A5904_11525 PF01565 FAD binding domain A5904_11525 PF02913 FAD linked oxidases, C-terminal domain A5904_11540 PF01614 Bacterial transcriptional regulator A5904_11540 PF09339 IclR helix-turn-helix domain A5904_11550 PF02595 Glycerate kinase family A5904_11565 PF13185 GAF domain A5904_11565 PF00158 Sigma-54 interaction domain A5904_11565 PF02954 Bacterial regulatory protein, Fis family A5904_11595 PF01327 Polypeptide deformylase A5904_11605 PF00596 Class II Aldolase and Adducin N-terminal domain A5904_11615 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain A5904_11615 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain A5904_11620 PF03079 ARD/ARD' family A5904_11630 PF00849 RNA pseudouridylate synthase A5904_11635 PF13525 Outer membrane lipoprotein A5904_11640 PF00543 Nitrogen regulatory protein P-II A5904_11645 PF02540 NAD synthase A5904_11645 PF00795 Carbon-nitrogen hydrolase A5904_11650 PF02629 CoA binding domain A5904_11650 PF00549 CoA-ligase A5904_11660 PF08442 ATP-grasp domain A5904_11660 PF00549 CoA-ligase A5904_11665 PF00180 Isocitrate/isopropylmalate dehydrogenase A5904_11670 PF00330 Aconitase family (aconitate hydratase) A5904_11675 PF01740 STAS domain A5904_11675 PF00916 Sulfate permease family A5904_11680 PF00749 tRNA synthetases class I (E and Q), catalytic domain A5904_11685 PF01476 LysM domain A5904_11685 PF01464 Transglycosylase SLT domain A5904_11695 PF00923 Transaldolase/Fructose-6-phosphate aldolase A5904_11705 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A5904_11710 PF00149 Calcineurin-like phosphoesterase A5904_11715 PF13840 ACT domain A5904_11715 PF01842 ACT domain A5904_11715 PF00696 Amino acid kinase family A5904_11720 PF00202 Aminotransferase class-III A5904_11725 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A5904_11725 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A5904_11730 PF00764 Arginosuccinate synthase A5904_11735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A5904_11740 PF00929 Exonuclease A5904_11745 PF00075 RNase H A5904_11750 PF01209 ubiE/COQ5 methyltransferase family A5904_11755 PF00753 Metallo-beta-lactamase superfamily A5904_11755 PF16123 Hydroxyacylglutathione hydrolase C-terminus A5904_11760 PF05193 Peptidase M16 inactive domain A5904_11760 PF00675 Insulinase (Peptidase family M16) A5904_11765 PF00575 S1 RNA binding domain A5904_11765 PF03725 3' exoribonuclease family, domain 2 A5904_11765 PF01138 3' exoribonuclease family, domain 1 A5904_11765 PF00013 KH domain A5904_11765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain A5904_11770 PF00312 Ribosomal protein S15 A5904_11775 PF01509 TruB family pseudouridylate synthase (N terminal domain) A5904_11775 PF09157 Pseudouridine synthase II TruB, C-terminal A5904_11775 PF16198 tRNA pseudouridylate synthase B C-terminal domain A5904_11780 PF02033 Ribosome-binding factor A A5904_11785 PF04760 Translation initiation factor IF-2, N-terminal region A5904_11785 PF08364 Bacterial translation initiation factor IF-2 associated region A5904_11785 PF11987 Translation-initiation factor 2 A5904_11785 PF00009 Elongation factor Tu GTP binding domain A5904_11790 PF00575 S1 RNA binding domain A5904_11790 PF08529 NusA N-terminal domain A5904_11790 PF13184 NusA-like KH domain A5904_11795 PF02576 RimP N-terminal domain A5904_11795 PF17384 RimP C-terminal SH3 domain A5904_11875 PF00005 ABC transporter A5904_11880 PF02517 CPBP intramembrane metalloprotease A5904_11890 PF03734 L,D-transpeptidase catalytic domain A5904_11890 PF17969 L,D-transpeptidase C-terminal domain A5904_11890 PF01476 LysM domain A5904_11900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A5904_11900 PF02403 Seryl-tRNA synthetase N-terminal domain A5904_11905 PF00004 ATPase family associated with various cellular activities (AAA) A5904_11905 PF12002 MgsA AAA+ ATPase C terminal A5904_11905 PF16193 AAA C-terminal domain A5904_11915 PF03548 Outer membrane lipoprotein carrier protein LolA A5904_11920 PF09397 Ftsk gamma domain A5904_11920 PF01580 FtsK/SpoIIIE family A5904_11920 PF13491 4TM region of DNA translocase FtsK/SpoIIIE A5904_11920 PF17854 FtsK alpha domain A5904_11925 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_11930 PF00488 MutS domain V A5904_11930 PF01713 Smr domain A5904_11935 PF13411 MerR HTH family regulatory protein A5904_11940 PF01142 tRNA pseudouridine synthase D (TruD) A5904_11945 PF02542 YgbB family A5904_11950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase A5904_11955 PF00271 Helicase conserved C-terminal domain A5904_11955 PF02559 CarD-like/TRCF domain A5904_11955 PF17757 UvrB interaction domain A5904_11955 PF00270 DEAD/DEAH box helicase A5904_11955 PF03461 TRCF domain A5904_11965 PF08534 Redoxin A5904_11965 PF00462 Glutaredoxin A5904_11970 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_11970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A5904_11975 PF01048 Phosphorylase superfamily A5904_12000 PF01219 Prokaryotic diacylglycerol kinase A5904_12005 PF04002 RadC-like JAB domain A5904_12010 PF02441 Flavoprotein A5904_12010 PF04127 DNA / pantothenate metabolism flavoprotein A5904_12015 PF00692 dUTPase A5904_12025 PF00692 dUTPase A5904_12030 PF10609 NUBPL iron-transfer P-loop NTPase A5904_12040 PF01113 Dihydrodipicolinate reductase, N-terminus A5904_12040 PF05173 Dihydrodipicolinate reductase, C-terminus A5904_12045 PF00226 DnaJ domain A5904_12045 PF01556 DnaJ C terminal domain A5904_12045 PF00684 DnaJ central domain A5904_12050 PF00012 Hsp70 protein A5904_12055 PF01025 GrpE A5904_12060 PF01628 HrcA protein C terminal domain A5904_12060 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding A5904_12065 PF00471 Ribosomal protein L33 A5904_12070 PF00830 Ribosomal L28 family A5904_12075 PF04244 Deoxyribodipyrimidine photo-lyase-related protein A5904_12125 PF00989 PAS fold A5904_12130 PF02607 B12 binding domain A5904_12130 PF13411 MerR HTH family regulatory protein A5904_12140 PF01593 Flavin containing amine oxidoreductase A5904_12160 PF00106 short chain dehydrogenase A5904_12170 PF00268 Ribonucleotide reductase, small chain A5904_12175 PF02867 Ribonucleotide reductase, barrel domain A5904_12175 PF00317 Ribonucleotide reductase, all-alpha domain A5904_12175 PF03477 ATP cone domain A5904_12180 PF01523 Putative modulator of DNA gyrase A5904_12185 PF00004 ATPase family associated with various cellular activities (AAA) A5904_12185 PF01434 Peptidase family M41 A5904_12185 PF06480 FtsH Extracellular A5904_12185 PF17862 AAA+ lid domain A5904_12190 PF00809 Pterin binding enzyme A5904_12195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A5904_12195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A5904_12195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A5904_12195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A5904_12200 PF00121 Triosephosphate isomerase A5904_12205 PF03840 Preprotein translocase SecG subunit A5904_12215 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 A5904_12220 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A5904_12225 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A5904_12230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A5904_12240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A5904_12240 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A5904_12240 PF10531 SLBB domain A5904_12245 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A5904_12245 PF00384 Molybdopterin oxidoreductase A5904_12245 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal A5904_12250 PF00146 NADH dehydrogenase A5904_12255 PF12838 4Fe-4S dicluster domain A5904_12260 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 A5904_12265 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A5904_12270 PF00361 Proton-conducting membrane transporter A5904_12270 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A5904_12275 PF00361 Proton-conducting membrane transporter A5904_12275 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus A5904_12280 PF00361 Proton-conducting membrane transporter A5904_12295 PF03129 Anticodon binding domain A5904_12295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A5904_12295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A5904_12295 PF02824 TGS domain A5904_12300 PF00707 Translation initiation factor IF-3, C-terminal domain A5904_12300 PF05198 Translation initiation factor IF-3, N-terminal domain A5904_12305 PF01632 Ribosomal protein L35 A5904_12310 PF00453 Ribosomal protein L20 A5904_12315 PF01409 tRNA synthetases class II core domain (F) A5904_12315 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain A5904_12320 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain A5904_12320 PF03484 tRNA synthetase B5 domain A5904_12320 PF03147 Ferredoxin-fold anticodon binding domain A5904_12320 PF01588 Putative tRNA binding domain A5904_12320 PF03483 B3/4 domain A5904_12325 PF00216 Bacterial DNA-binding protein A5904_12330 PF13411 MerR HTH family regulatory protein A5904_12340 PF00005 ABC transporter A5904_12350 PF02887 Pyruvate kinase, alpha/beta domain A5904_12350 PF00224 Pyruvate kinase, barrel domain A5904_12350 PF02887 Pyruvate kinase, alpha/beta domain A5904_12350 PF00224 Pyruvate kinase, barrel domain A5904_12375 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 A5904_12380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A5904_12380 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A5904_12380 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A5904_12385 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A5904_12385 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A5904_12385 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A5904_12395 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A5904_12395 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A5904_12395 PF10531 SLBB domain A5904_12400 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A5904_12400 PF00384 Molybdopterin oxidoreductase A5904_12400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A5904_12405 PF00146 NADH dehydrogenase A5904_12410 PF12838 4Fe-4S dicluster domain A5904_12420 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A5904_12425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A5904_12425 PF00361 Proton-conducting membrane transporter A5904_12430 PF00361 Proton-conducting membrane transporter A5904_12435 PF00361 Proton-conducting membrane transporter A5904_12470 PF01475 Ferric uptake regulator family A5904_12475 PF04355 SmpA / OmlA family A5904_12485 PF13091 PLD-like domain A5904_12505 PF01668 SmpB protein A5904_12515 PF13098 Thioredoxin-like domain A5904_12520 PF02600 Disulfide bond formation protein DsbB A5904_12525 PF02222 ATP-grasp domain A5904_12525 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain A5904_12530 PF00731 AIR carboxylase A5904_12535 PF02390 Putative methyltransferase A5904_12540 PF00325 Bacterial regulatory proteins, crp family A5904_12540 PF00027 Cyclic nucleotide-binding domain A5904_12545 PF00753 Metallo-beta-lactamase superfamily A5904_12565 PF00437 Type II/IV secretion system protein A5904_12570 PF00437 Type II/IV secretion system protein A5904_12575 PF01168 Alanine racemase, N-terminal domain A5904_12580 PF14748 Pyrroline-5-carboxylate reductase dimerisation A5904_12580 PF03807 NADP oxidoreductase coenzyme F420-dependent A5904_12585 PF02325 YGGT family A5904_12590 PF02594 Uncharacterised ACR, YggU family COG1872 A5904_12595 PF06968 Biotin and Thiamin Synthesis associated domain A5904_12595 PF04055 Radical SAM superfamily A5904_12605 PF00529 HlyD membrane-fusion protein of T1SS A5904_12605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A5904_12615 PF00696 Amino acid kinase family A5904_12620 PF00440 Bacterial regulatory proteins, tetR family A5904_12640 PF00970 Oxidoreductase FAD-binding domain A5904_12640 PF00111 2Fe-2S iron-sulfur cluster binding domain A5904_12640 PF00175 Oxidoreductase NAD-binding domain A5904_12645 PF00929 Exonuclease A5904_12650 PF03649 Uncharacterised protein family (UPF0014) A5904_12655 PF04377 Arginine-tRNA-protein transferase, C terminus A5904_12655 PF04376 Arginine-tRNA-protein transferase, N terminus A5904_12660 PF03588 Leucyl/phenylalanyl-tRNA protein transferase A5904_12665 PF01435 Peptidase family M48 A5904_12675 PF08241 Methyltransferase domain A5904_12680 PF00561 alpha/beta hydrolase fold A5904_12685 PF00155 Aminotransferase class I and II A5904_12690 PF00156 Phosphoribosyl transferase domain A5904_12695 PF00588 SpoU rRNA Methylase family A5904_12700 PF07690 Major Facilitator Superfamily A5904_12710 PF03781 Sulfatase-modifying factor enzyme 1 A5904_12710 PF12867 DinB superfamily A5904_12715 PF00155 Aminotransferase class I and II A5904_12720 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) A5904_12730 PF01075 Glycosyltransferase family 9 (heptosyltransferase) A5904_12735 PF00535 Glycosyl transferase family 2 A5904_12755 PF13439 Glycosyltransferase Family 4 A5904_12755 PF00534 Glycosyl transferases group 1 A5904_12765 PF00535 Glycosyl transferase family 2 A5904_12770 PF00293 NUDIX domain A5904_12775 PF01960 ArgJ family A5904_12780 PF01043 SecA preprotein cross-linking domain A5904_12780 PF02810 SEC-C motif A5904_12780 PF07517 SecA DEAD-like domain A5904_12780 PF07516 SecA Wing and Scaffold domain A5904_12790 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase A5904_12795 PF00043 Glutathione S-transferase, C-terminal domain A5904_12795 PF02798 Glutathione S-transferase, N-terminal domain A5904_12800 PF00501 AMP-binding enzyme A5904_12815 PF02381 MraZ protein, putative antitoxin-like A5904_12820 PF01795 MraW methylase family A5904_12830 PF00905 Penicillin binding protein transpeptidase domain A5904_12830 PF03717 Penicillin-binding Protein dimerisation domain A5904_12835 PF08245 Mur ligase middle domain A5904_12835 PF02875 Mur ligase family, glutamate ligase domain A5904_12835 PF01225 Mur ligase family, catalytic domain A5904_12840 PF02875 Mur ligase family, glutamate ligase domain A5904_12840 PF08245 Mur ligase middle domain A5904_12840 PF01225 Mur ligase family, catalytic domain A5904_12845 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 A5904_12845 PF00953 Glycosyl transferase family 4 A5904_12850 PF02875 Mur ligase family, glutamate ligase domain A5904_12850 PF08245 Mur ligase middle domain A5904_12855 PF01098 Cell cycle protein A5904_12860 PF03033 Glycosyltransferase family 28 N-terminal domain A5904_12860 PF04101 Glycosyltransferase family 28 C-terminal domain A5904_12865 PF08245 Mur ligase middle domain A5904_12865 PF02875 Mur ligase family, glutamate ligase domain A5904_12865 PF01225 Mur ligase family, catalytic domain A5904_12870 PF01565 FAD binding domain A5904_12870 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain A5904_12875 PF07478 D-ala D-ala ligase C-terminus A5904_12875 PF01820 D-ala D-ala ligase N-terminus A5904_12880 PF08478 POTRA domain, FtsQ-type A5904_12880 PF03799 Cell division protein FtsQ A5904_12885 PF02491 SHS2 domain inserted in FTSA A5904_12890 PF12327 FtsZ family, C-terminal domain A5904_12890 PF00091 Tubulin/FtsZ family, GTPase domain A5904_12895 PF00343 Carbohydrate phosphorylase A5904_12900 PF06415 BPG-independent PGAM N-terminus (iPGM_N) A5904_12900 PF01676 Metalloenzyme superfamily A5904_12910 PF13180 PDZ domain A5904_12910 PF03572 Peptidase family S41 A5904_12915 PF01965 DJ-1/PfpI family A5904_12925 PF02617 ATP-dependent Clp protease adaptor protein ClpS A5904_12930 PF10431 C-terminal, D2-small domain, of ClpB protein A5904_12930 PF02861 Clp amino terminal domain, pathogenicity island component A5904_12930 PF17871 AAA lid domain A5904_12930 PF07724 AAA domain (Cdc48 subfamily) A5904_12930 PF00004 ATPase family associated with various cellular activities (AAA) A5904_12935 PF00561 alpha/beta hydrolase fold A5904_12940 PF00561 alpha/beta hydrolase fold A5904_12940 PF07021 Methionine biosynthesis protein MetW A5904_12945 PF00043 Glutathione S-transferase, C-terminal domain A5904_12945 PF02798 Glutathione S-transferase, N-terminal domain A5904_12950 PF01209 ubiE/COQ5 methyltransferase family A5904_12955 PF01717 Cobalamin-independent synthase, Catalytic domain A5904_12955 PF08267 Cobalamin-independent synthase, N-terminal domain A5904_12985 PF00905 Penicillin binding protein transpeptidase domain A5904_12985 PF03717 Penicillin-binding Protein dimerisation domain A5904_12990 PF03330 Lytic transglycolase A5904_12990 PF05036 Sporulation related domain A5904_13000 PF07885 Ion channel A5904_13000 PF02254 TrkA-N domain A5904_13005 PF03717 Penicillin-binding Protein dimerisation domain A5904_13005 PF00905 Penicillin binding protein transpeptidase domain A5904_13010 PF13525 Outer membrane lipoprotein A5904_13015 PF13180 PDZ domain A5904_13020 PF00768 D-alanyl-D-alanine carboxypeptidase A5904_13020 PF07943 Penicillin-binding protein 5, C-terminal domain A5904_13025 PF04052 TolB amino-terminal domain A5904_13025 PF07676 WD40-like Beta Propeller Repeat A5904_13035 PF03466 LysR substrate binding domain A5904_13035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_13045 PF00829 Ribosomal prokaryotic L21 protein A5904_13050 PF01016 Ribosomal L27 protein A5904_13055 PF01926 50S ribosome-binding GTPase A5904_13055 PF01018 GTP1/OBG A5904_13060 PF01472 PUA domain A5904_13060 PF00696 Amino acid kinase family A5904_13065 PF00691 OmpA family A5904_13065 PF05736 OprF membrane domain A5904_13070 PF17284 Spermidine synthase tetramerisation domain A5904_13075 PF02675 S-adenosylmethionine decarboxylase A5904_13080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A5904_13080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A5904_13085 PF14698 Argininosuccinate lyase C-terminal A5904_13085 PF00206 Lyase A5904_13100 PF01636 Phosphotransferase enzyme family A5904_13110 PF03641 Possible lysine decarboxylase A5904_13115 PF01367 5'-3' exonuclease, C-terminal SAM fold A5904_13115 PF01612 3'-5' exonuclease A5904_13115 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain A5904_13115 PF00476 DNA polymerase family A A5904_13120 PF07885 Ion channel A5904_13120 PF02254 TrkA-N domain A5904_13125 PF01926 50S ribosome-binding GTPase A5904_13130 PF05140 ResB-like family A5904_13135 PF01578 Cytochrome C assembly protein A5904_13145 PF02261 Aspartate decarboxylase A5904_13150 PF00690 Cation transporter/ATPase, N-terminus A5904_13150 PF00689 Cation transporting ATPase, C-terminus A5904_13155 PF08450 SMP-30/Gluconolactonase/LRE-like region A5904_13160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A5904_13160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A5904_13165 PF00083 Sugar (and other) transporter A5904_13175 PF12848 ABC transporter A5904_13175 PF00005 ABC transporter A5904_13250 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_13250 PF01610 Transposase A5904_13250 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_13255 PF00182 Chitinase class I A5904_13275 PF00182 Chitinase class I A5904_13300 PF00437 Type II/IV secretion system protein A5904_13305 PF13629 Pilus formation protein N terminal region A5904_13305 PF00263 Bacterial type II and III secretion system protein A5904_13305 PF04972 BON domain A5904_13365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A5904_13375 PF02021 Uncharacterised protein family UPF0102 A5904_13380 PF13580 SIS domain A5904_13385 PF01565 FAD binding domain A5904_13385 PF02913 FAD linked oxidases, C-terminal domain A5904_13395 PF01075 Glycosyltransferase family 9 (heptosyltransferase) A5904_13400 PF00691 OmpA family A5904_13400 PF04972 BON domain A5904_13410 PF03466 LysR substrate binding domain A5904_13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_13415 PF06969 HemN C-terminal domain A5904_13415 PF04055 Radical SAM superfamily A5904_13430 PF01106 NifU-like domain A5904_13435 PF00919 Uncharacterized protein family UPF0004 A5904_13435 PF18693 TRAM domain A5904_13435 PF04055 Radical SAM superfamily A5904_13445 PF02152 Dihydroneopterin aldolase A5904_13450 PF02660 Glycerol-3-phosphate acyltransferase A5904_13460 PF00814 Glycoprotease family A5904_13465 PF04305 Protein of unknown function (DUF455) A5904_13520 PF00255 Glutathione peroxidase A5904_13525 PF00579 tRNA synthetases class I (W and Y) A5904_13555 PF01914 MarC family integral membrane protein A5904_13565 PF01336 OB-fold nucleic acid binding domain A5904_13565 PF00152 tRNA synthetases class II (D, K and N) A5904_13565 PF02938 GAD domain A5904_13570 PF00293 NUDIX domain A5904_13575 PF02445 Quinolinate synthetase A protein A5904_13585 PF01709 Transcriptional regulator A5904_13590 PF02075 Crossover junction endodeoxyribonuclease RuvC A5904_13595 PF01330 RuvA N terminal domain A5904_13595 PF07499 RuvA, C-terminal domain A5904_13600 PF17864 RuvB AAA lid domain A5904_13600 PF05491 RuvB C-terminal winged helix domain A5904_13600 PF05496 Holliday junction DNA helicase RuvB P-loop domain A5904_13605 PF03061 Thioesterase superfamily A5904_13610 PF01618 MotA/TolQ/ExbB proton channel family A5904_13615 PF02472 Biopolymer transport protein ExbD/TolR A5904_13625 PF07676 WD40-like Beta Propeller Repeat A5904_13625 PF04052 TolB amino-terminal domain A5904_13630 PF06508 Queuosine biosynthesis protein QueC A5904_13635 PF04055 Radical SAM superfamily A5904_13645 PF00691 OmpA family A5904_13650 PF03900 Porphobilinogen deaminase, C-terminal domain A5904_13650 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain A5904_13660 PF00490 Delta-aminolevulinic acid dehydratase A5904_13675 PF00083 Sugar (and other) transporter A5904_13680 PF03006 Haemolysin-III related A5904_13685 PF00403 Heavy-metal-associated domain A5904_13690 PF07992 Pyridine nucleotide-disulphide oxidoreductase A5904_13690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A5904_13690 PF00403 Heavy-metal-associated domain A5904_13705 PF10150 Ribonuclease E/G family A5904_13705 PF00575 S1 RNA binding domain A5904_13710 PF02545 Maf-like protein A5904_13725 PF02590 Predicted SPOUT methyltransferase A5904_13735 PF01467 Cytidylyltransferase-like A5904_13750 PF03279 Bacterial lipid A biosynthesis acyltransferase A5904_13755 PF00011 Hsp20/alpha crystallin family A5904_13760 PF01926 50S ribosome-binding GTPase A5904_13760 PF12631 MnmE helical domain A5904_13760 PF10396 GTP-binding protein TrmE N-terminus A5904_13765 PF14849 YidC periplasmic domain A5904_13765 PF02096 60Kd inner membrane protein A5904_13770 PF01809 Putative membrane protein insertion efficiency factor A5904_13775 PF00825 Ribonuclease P A5904_13780 PF00468 Ribosomal protein L34 A5904_13785 PF00005 ABC transporter A5904_13790 PF02405 Permease MlaE A5904_13795 PF02470 MlaD protein A5904_13810 PF00005 ABC transporter A5904_13815 PF01479 S4 domain A5904_13820 PF04166 Pyridoxal phosphate biosynthetic protein PdxA A5904_13830 PF00398 Ribosomal RNA adenine dimethylase A5904_13845 PF00750 tRNA synthetases class I (R) A5904_13845 PF05746 DALR anticodon binding domain A5904_13845 PF03485 Arginyl tRNA synthetase N terminal domain A5904_13850 PF12794 Mechanosensitive ion channel inner membrane domain 1 A5904_13850 PF00924 Mechanosensitive ion channel A5904_13850 PF12795 Mechanosensitive ion channel porin domain A5904_13855 PF07690 Major Facilitator Superfamily A5904_13860 PF03466 LysR substrate binding domain A5904_13860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_13865 PF05175 Methyltransferase small domain A5904_13870 PF03372 Endonuclease/Exonuclease/phosphatase family A5904_13880 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ A5904_13885 PF00043 Glutathione S-transferase, C-terminal domain A5904_13885 PF13417 Glutathione S-transferase, N-terminal domain A5904_13890 PF03372 Endonuclease/Exonuclease/phosphatase family A5904_13895 PF00762 Ferrochelatase A5904_13900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A5904_13905 PF03702 Anhydro-N-acetylmuramic acid kinase A5904_13910 PF18317 Shikimate 5'-dehydrogenase C-terminal domain A5904_13910 PF08501 Shikimate dehydrogenase substrate binding domain A5904_13910 PF01488 Shikimate / quinate 5-dehydrogenase A5904_13915 PF00437 Type II/IV secretion system protein A5904_13915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain A5904_13920 PF00512 His Kinase A (phospho-acceptor) domain A5904_13920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_13925 PF02954 Bacterial regulatory protein, Fis family A5904_13925 PF00158 Sigma-54 interaction domain A5904_13925 PF00072 Response regulator receiver domain A5904_13930 PF01478 Type IV leader peptidase family A5904_13930 PF06750 Bacterial Peptidase A24 N-terminal domain A5904_13935 PF01121 Dephospho-CoA kinase A5904_13940 PF07072 Cell division protein A5904_13945 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain A5904_13950 PF05818 Enterobacterial TraT complement resistance protein A5904_13960 PF10145 Phage-related minor tail protein A5904_13960 PF01551 Peptidase family M23 A5904_13960 PF01464 Transglycosylase SLT domain A5904_13965 PF02954 Bacterial regulatory protein, Fis family A5904_13980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A5904_13980 PF00289 Biotin carboxylase, N-terminal domain A5904_13980 PF02785 Biotin carboxylase C-terminal domain A5904_13985 PF00364 Biotin-requiring enzyme A5904_13990 PF01220 Dehydroquinase class II A5904_13995 PF00881 Nitroreductase family A5904_14015 PF01230 HIT domain A5904_14020 PF00202 Aminotransferase class-III A5904_14025 PF02581 Thiamine monophosphate synthase A5904_14030 PF08543 Phosphomethylpyrimidine kinase A5904_14040 PF00106 short chain dehydrogenase A5904_14050 PF01618 MotA/TolQ/ExbB proton channel family A5904_14055 PF02472 Biopolymer transport protein ExbD/TolR A5904_14075 PF00962 Adenosine/AMP deaminase A5904_14080 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_14080 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_14080 PF01610 Transposase A5904_14160 PF00872 Transposase, Mutator family A5904_14175 PF01610 Transposase A5904_14175 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_14175 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_14190 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase A5904_14190 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A5904_14195 PF00111 2Fe-2S iron-sulfur cluster binding domain A5904_14195 PF01799 [2Fe-2S] binding domain A5904_14205 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_14205 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_14205 PF01610 Transposase A5904_14215 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) A5904_14230 PF01425 Amidase A5904_14250 PF03466 LysR substrate binding domain A5904_14250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A5904_14275 PF00717 Peptidase S24-like A5904_14290 PF00589 Phage integrase family A5904_14290 PF02899 Phage integrase, N-terminal SAM-like domain A5904_14295 PF00216 Bacterial DNA-binding protein A5904_14305 PF00216 Bacterial DNA-binding protein A5904_14315 PF00216 Bacterial DNA-binding protein A5904_14325 PF05016 ParE toxin of type II toxin-antitoxin system, parDE A5904_14385 PF00580 UvrD/REP helicase N-terminal domain A5904_14385 PF13361 UvrD-like helicase C-terminal domain A5904_14400 PF17191 RecG wedge domain A5904_14400 PF00271 Helicase conserved C-terminal domain A5904_14400 PF00270 DEAD/DEAH box helicase A5904_14450 PF01695 IstB-like ATP binding protein A5904_14455 PF00665 Integrase core domain A5904_14460 PF00665 Integrase core domain A5904_14465 PF01695 IstB-like ATP binding protein A5904_14470 PF05598 Transposase domain (DUF772) A5904_14470 PF01609 Transposase DDE domain A5904_14480 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_14480 PF01610 Transposase A5904_14480 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_14495 PF01464 Transglycosylase SLT domain A5904_14500 PF01510 N-acetylmuramoyl-L-alanine amidase A5904_14500 PF01476 LysM domain A5904_14500 PF01471 Putative peptidoglycan binding domain A5904_14545 PF17768 RecJ OB domain A5904_14545 PF02272 DHHA1 domain A5904_14545 PF01368 DHH family A5904_14600 PF01751 Toprim domain A5904_14600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A5904_14600 PF00204 DNA gyrase B A5904_14600 PF00986 DNA gyrase B subunit, carboxyl terminus A5904_14600 PF18053 DNA gyrase B subunit insert domain A5904_14610 PF00521 DNA gyrase/topoisomerase IV, subunit A A5904_14610 PF03989 DNA gyrase C-terminal domain, beta-propeller A5904_14620 PF00436 Single-strand binding protein family A5904_14690 PF00589 Phage integrase family A5904_14690 PF02899 Phage integrase, N-terminal SAM-like domain A5904_14725 PF02472 Biopolymer transport protein ExbD/TolR A5904_14730 PF01618 MotA/TolQ/ExbB proton channel family A5904_14745 PF01695 IstB-like ATP binding protein A5904_14750 PF00665 Integrase core domain A5904_14760 PF00270 DEAD/DEAH box helicase A5904_14760 PF09369 Domain of unknown function (DUF1998) A5904_14760 PF00271 Helicase conserved C-terminal domain A5904_14765 PF00176 SNF2 family N-terminal domain A5904_14765 PF00271 Helicase conserved C-terminal domain A5904_14820 PF00216 Bacterial DNA-binding protein A5904_14870 PF01695 IstB-like ATP binding protein A5904_14875 PF02796 Helix-turn-helix domain of resolvase A5904_14875 PF00665 Integrase core domain A5904_14880 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) A5904_14930 PF00483 Nucleotidyl transferase A5904_14935 PF00535 Glycosyl transferase family 2 A5904_14935 PF07238 PilZ domain A5904_14935 PF03552 Cellulose synthase A5904_15050 PF00004 ATPase family associated with various cellular activities (AAA) A5904_15050 PF07724 AAA domain (Cdc48 subfamily) A5904_15050 PF17871 AAA lid domain A5904_15050 PF02861 Clp amino terminal domain, pathogenicity island component A5904_15050 PF10431 C-terminal, D2-small domain, of ClpB protein A5904_15090 PF13173 AAA domain A5904_15090 PF13635 Domain of unknown function (DUF4143) A5904_15105 PF13614 AAA domain A5904_15110 PF02195 ParB-like nuclease domain A5904_15110 PF17762 HTH domain found in ParB protein A5904_15120 PF00268 Ribonucleotide reductase, small chain A5904_15220 PF00216 Bacterial DNA-binding protein A5904_15315 PF01610 Transposase A5904_15315 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15315 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15330 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15330 PF01610 Transposase A5904_15330 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15415 PF00239 Resolvase, N terminal domain A5904_15415 PF02796 Helix-turn-helix domain of resolvase A5904_15440 PF13614 AAA domain A5904_15455 PF13700 Domain of unknown function (DUF4158) A5904_15455 PF01526 Tn3 transposase DDE domain A5904_15525 PF01654 Cytochrome bd terminal oxidase subunit I A5904_15530 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15530 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15530 PF01610 Transposase A5904_15550 PF01610 Transposase A5904_15550 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15550 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15565 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15565 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15565 PF01610 Transposase A5904_15585 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15585 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15585 PF01610 Transposase A5904_15590 PF01610 Transposase A5904_15590 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15590 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15600 PF01695 IstB-like ATP binding protein A5904_15605 PF00665 Integrase core domain A5904_15610 PF00665 Integrase core domain A5904_15615 PF00665 Integrase core domain A5904_15620 PF01695 IstB-like ATP binding protein A5904_15625 PF01609 Transposase DDE domain A5904_15625 PF05598 Transposase domain (DUF772) A5904_15655 PF13007 Transposase C of IS166 homeodomain A5904_15655 PF13005 zinc-finger binding domain of transposase IS66 A5904_15655 PF13817 IS66 C-terminal element A5904_15655 PF03050 Transposase IS66 family A5904_15660 PF05717 IS66 Orf2 like protein A5904_15675 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15675 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15675 PF01610 Transposase A5904_15685 PF13570 PQQ-like domain A5904_15685 PF13360 PQQ-like domain A5904_15685 PF01011 PQQ enzyme repeat A5904_15695 PF05717 IS66 Orf2 like protein A5904_15700 PF13005 zinc-finger binding domain of transposase IS66 A5904_15700 PF13007 Transposase C of IS166 homeodomain A5904_15700 PF13817 IS66 C-terminal element A5904_15700 PF03050 Transposase IS66 family A5904_15715 PF01610 Transposase A5904_15715 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15715 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15735 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15735 PF01610 Transposase A5904_15735 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15745 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15745 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15745 PF01610 Transposase A5904_15755 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15755 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15755 PF01610 Transposase A5904_15770 PF05717 IS66 Orf2 like protein A5904_15775 PF03050 Transposase IS66 family A5904_15775 PF13817 IS66 C-terminal element A5904_15775 PF13007 Transposase C of IS166 homeodomain A5904_15775 PF13005 zinc-finger binding domain of transposase IS66 A5904_15790 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15790 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15790 PF01610 Transposase A5904_15800 PF01610 Transposase A5904_15800 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15800 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15810 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15810 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15810 PF01610 Transposase A5904_15820 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15820 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15820 PF01610 Transposase A5904_15830 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15830 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15830 PF01610 Transposase A5904_15840 PF01555 DNA methylase A5904_15845 PF01555 DNA methylase A5904_15860 PF01610 Transposase A5904_15860 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15860 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15865 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15865 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15865 PF01610 Transposase A5904_15870 PF01610 Transposase A5904_15870 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15870 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15880 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15880 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15880 PF01610 Transposase A5904_15885 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15885 PF01610 Transposase A5904_15885 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15900 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15900 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15900 PF01610 Transposase A5904_15905 PF01609 Transposase DDE domain A5904_15905 PF05598 Transposase domain (DUF772) A5904_15930 PF13005 zinc-finger binding domain of transposase IS66 A5904_15930 PF13817 IS66 C-terminal element A5904_15930 PF03050 Transposase IS66 family A5904_15930 PF13007 Transposase C of IS166 homeodomain A5904_15935 PF05717 IS66 Orf2 like protein A5904_15950 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15950 PF01610 Transposase A5904_15950 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15955 PF00872 Transposase, Mutator family A5904_15965 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15965 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15965 PF01610 Transposase A5904_15975 PF05598 Transposase domain (DUF772) A5904_15975 PF01609 Transposase DDE domain A5904_15980 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15980 PF01610 Transposase A5904_15980 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_15990 PF05598 Transposase domain (DUF772) A5904_15990 PF01609 Transposase DDE domain A5904_15995 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_15995 PF01610 Transposase A5904_15995 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_16000 PF07238 PilZ domain A5904_16000 PF00535 Glycosyl transferase family 2 A5904_16000 PF03552 Cellulose synthase A5904_16005 PF00483 Nucleotidyl transferase A5904_16015 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_16015 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_16015 PF01610 Transposase A5904_16030 PF01610 Transposase A5904_16030 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_16030 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_16070 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_16070 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_16070 PF01610 Transposase A5904_16075 PF01610 Transposase A5904_16075 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_16075 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_16110 PF13005 zinc-finger binding domain of transposase IS66 A5904_16110 PF13007 Transposase C of IS166 homeodomain A5904_16110 PF03050 Transposase IS66 family A5904_16110 PF13817 IS66 C-terminal element A5904_16115 PF05717 IS66 Orf2 like protein A5904_16130 PF01610 Transposase A5904_16130 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_16130 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_16170 PF01610 Transposase A5904_16170 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_16170 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_16185 PF13542 Helix-turn-helix domain of transposase family ISL3 A5904_16185 PF01610 Transposase A5904_16185 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A5904_16215 PF13007 Transposase C of IS166 homeodomain A5904_16215 PF13817 IS66 C-terminal element A5904_16215 PF03050 Transposase IS66 family A5904_16215 PF13005 zinc-finger binding domain of transposase IS66 A5904_16220 PF05717 IS66 Orf2 like protein A5904_16235 PF00665 Integrase core domain