locus-tag class description AFERRID_00020 PF00717 Peptidase S24-like AFERRID_00030 PF11799 impB/mucB/samB family C-terminal domain AFERRID_00030 PF00817 impB/mucB/samB family AFERRID_00030 PF11798 IMS family HHH motif AFERRID_00030 PF13438 Domain of unknown function (DUF4113) AFERRID_00120 PF00873 AcrB/AcrD/AcrF family AFERRID_00130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFERRID_00230 PF01545 Cation efflux family AFERRID_00240 PF13411 MerR HTH family regulatory protein AFERRID_00260 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AFERRID_00270 PF05101 Type IV secretory pathway, VirB3-like protein AFERRID_00280 PF04956 TrbC/VIRB2 family AFERRID_00310 PF00437 Type II/IV secretion system protein AFERRID_00370 PF01751 Toprim domain AFERRID_00370 PF01131 DNA topoisomerase AFERRID_00370 PF01396 Topoisomerase DNA binding C4 zinc finger AFERRID_00430 PF05662 Coiled stalk of trimeric autotransporter adhesin AFERRID_00430 PF05658 Head domain of trimeric autotransporter adhesin AFERRID_00430 PF03895 YadA-like membrane anchor domain AFERRID_00440 PF10502 Signal peptidase, peptidase S26 AFERRID_00450 PF02534 Type IV secretory system Conjugative DNA transfer AFERRID_00490 PF08401 Domain of unknown function (DUF1738) AFERRID_00490 PF18818 Metallopeptidase superfamily domain AFERRID_00490 PF13362 Toprim domain AFERRID_00530 PF13520 Amino acid permease AFERRID_00540 PF00871 Acetokinase family AFERRID_00550 PF09363 XFP C-terminal domain AFERRID_00550 PF09364 XFP N-terminal domain AFERRID_00550 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AFERRID_00560 PF00690 Cation transporter/ATPase, N-terminus AFERRID_00560 PF00689 Cation transporting ATPase, C-terminus AFERRID_00580 PF03976 Polyphosphate kinase 2 (PPK2) AFERRID_00620 PF02779 Transketolase, pyrimidine binding domain AFERRID_00620 PF02780 Transketolase, C-terminal domain AFERRID_00620 PF00456 Transketolase, thiamine diphosphate binding domain AFERRID_00630 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFERRID_00630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFERRID_00640 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFERRID_00640 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFERRID_00650 PF00723 Glycosyl hydrolases family 15 AFERRID_00680 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFERRID_00690 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFERRID_00700 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFERRID_00700 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFERRID_00720 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFERRID_00720 PF10531 SLBB domain AFERRID_00720 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFERRID_00730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFERRID_00730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFERRID_00730 PF00384 Molybdopterin oxidoreductase AFERRID_00740 PF00146 NADH dehydrogenase AFERRID_00750 PF12838 4Fe-4S dicluster domain AFERRID_00760 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFERRID_00770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFERRID_00780 PF00361 Proton-conducting membrane transporter AFERRID_00780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFERRID_00790 PF00361 Proton-conducting membrane transporter AFERRID_00800 PF00361 Proton-conducting membrane transporter AFERRID_00850 PF05199 GMC oxidoreductase AFERRID_00850 PF00732 GMC oxidoreductase AFERRID_00880 PF03466 LysR substrate binding domain AFERRID_00880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_00890 PF00654 Voltage gated chloride channel AFERRID_00920 PF07690 Major Facilitator Superfamily AFERRID_00950 PF00654 Voltage gated chloride channel AFERRID_01060 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFERRID_01070 PF13520 Amino acid permease AFERRID_01080 PF13520 Amino acid permease AFERRID_01110 PF04403 Paraquat-inducible protein A AFERRID_01160 PF00462 Glutaredoxin AFERRID_01170 PF00403 Heavy-metal-associated domain AFERRID_01190 PF00403 Heavy-metal-associated domain AFERRID_01200 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFERRID_01200 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFERRID_01260 PF00589 Phage integrase family AFERRID_01300 PF18821 Large polyvalent protein-associated domain 7 AFERRID_01300 PF03432 Relaxase/Mobilisation nuclease domain AFERRID_01320 PF10548 P22AR C-terminal domain AFERRID_01320 PF08346 AntA/AntB antirepressor AFERRID_01390 PF03887 YfbU domain AFERRID_01410 PF00145 C-5 cytosine-specific DNA methylase AFERRID_01520 PF01381 Helix-turn-helix AFERRID_01520 PF00717 Peptidase S24-like AFERRID_01560 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AFERRID_01570 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFERRID_01600 PF00521 DNA gyrase/topoisomerase IV, subunit A AFERRID_01610 PF00204 DNA gyrase B AFERRID_01610 PF00986 DNA gyrase B subunit, carboxyl terminus AFERRID_01610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_01610 PF01751 Toprim domain AFERRID_01620 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_01620 PF08521 Two-component sensor kinase N-terminal AFERRID_01630 PF00486 Transcriptional regulatory protein, C terminal AFERRID_01630 PF00072 Response regulator receiver domain AFERRID_01660 PF00873 AcrB/AcrD/AcrF family AFERRID_01720 PF00486 Transcriptional regulatory protein, C terminal AFERRID_01720 PF00072 Response regulator receiver domain AFERRID_01730 PF00672 HAMP domain AFERRID_01730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_01730 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_01760 PF00873 AcrB/AcrD/AcrF family AFERRID_01820 PF05567 Neisseria PilC beta-propeller domain AFERRID_01840 PF07963 Prokaryotic N-terminal methylation motif AFERRID_01860 PF00482 Type II secretion system (T2SS), protein F AFERRID_01890 PF07963 Prokaryotic N-terminal methylation motif AFERRID_01890 PF00114 Pilin (bacterial filament) AFERRID_01990 PF01695 IstB-like ATP binding protein AFERRID_02000 PF00665 Integrase core domain AFERRID_02010 PF01381 Helix-turn-helix AFERRID_02030 PF07549 SecD/SecF GG Motif AFERRID_02030 PF02355 Protein export membrane protein AFERRID_02040 PF13721 SecD export protein N-terminal TM region AFERRID_02040 PF02355 Protein export membrane protein AFERRID_02040 PF07549 SecD/SecF GG Motif AFERRID_02050 PF02699 Preprotein translocase subunit AFERRID_02060 PF01702 Queuine tRNA-ribosyltransferase AFERRID_02070 PF02547 Queuosine biosynthesis protein AFERRID_02080 PF03471 Transporter associated domain AFERRID_02080 PF00571 CBS domain AFERRID_02080 PF01595 Cyclin M transmembrane N-terminal domain AFERRID_02100 PF01053 Cys/Met metabolism PLP-dependent enzyme AFERRID_02110 PF13537 Glutamine amidotransferase domain AFERRID_02110 PF00156 Phosphoribosyl transferase domain AFERRID_02130 PF08245 Mur ligase middle domain AFERRID_02130 PF02875 Mur ligase family, glutamate ligase domain AFERRID_02140 PF17848 Acetyl-coA carboxylase zinc finger domain AFERRID_02140 PF01039 Carboxyl transferase domain AFERRID_02150 PF00290 Tryptophan synthase alpha chain AFERRID_02160 PF00291 Pyridoxal-phosphate dependent enzyme AFERRID_02170 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFERRID_02180 PF01416 tRNA pseudouridine synthase AFERRID_02200 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFERRID_02200 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFERRID_02210 PF00180 Isocitrate/isopropylmalate dehydrogenase AFERRID_02220 PF12804 MobA-like NTP transferase domain AFERRID_02230 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AFERRID_02240 PF03453 MoeA N-terminal region (domain I and II) AFERRID_02240 PF03454 MoeA C-terminal region (domain IV) AFERRID_02240 PF00994 Probable molybdopterin binding domain AFERRID_02250 PF13091 PLD-like domain AFERRID_02260 PF01343 Peptidase family S49 AFERRID_02270 PF01738 Dienelactone hydrolase family AFERRID_02270 PF00156 Phosphoribosyl transferase domain AFERRID_02280 PF00011 Hsp20/alpha crystallin family AFERRID_02290 PF08240 Alcohol dehydrogenase GroES-like domain AFERRID_02330 PF01435 Peptidase family M48 AFERRID_02340 PF07690 Major Facilitator Superfamily AFERRID_02410 PF13847 Methyltransferase domain AFERRID_02440 PF02637 GatB domain AFERRID_02440 PF02934 GatB/GatE catalytic domain AFERRID_02450 PF01425 Amidase AFERRID_02460 PF02686 Glu-tRNAGln amidotransferase C subunit AFERRID_02490 PF04055 Radical SAM superfamily AFERRID_02490 PF06463 Molybdenum Cofactor Synthesis C AFERRID_02530 PF04794 YdjC-like protein AFERRID_02560 PF01370 NAD dependent epimerase/dehydratase family AFERRID_02570 PF01048 Phosphorylase superfamily AFERRID_02580 PF13243 Squalene-hopene cyclase C-terminal domain AFERRID_02580 PF13249 Squalene-hopene cyclase N-terminal domain AFERRID_02600 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFERRID_02600 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFERRID_02610 PF02556 Preprotein translocase subunit SecB AFERRID_02620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFERRID_02620 PF03129 Anticodon binding domain AFERRID_02620 PF04073 Aminoacyl-tRNA editing domain AFERRID_02630 PF00582 Universal stress protein family AFERRID_02700 PF13277 YmdB-like protein AFERRID_02710 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFERRID_02740 PF03717 Penicillin-binding Protein dimerisation domain AFERRID_02740 PF00905 Penicillin binding protein transpeptidase domain AFERRID_02750 PF14693 Ribosomal protein TL5, C-terminal domain AFERRID_02750 PF01386 Ribosomal L25p family AFERRID_02760 PF01195 Peptidyl-tRNA hydrolase AFERRID_02770 PF01926 50S ribosome-binding GTPase AFERRID_02770 PF06071 Protein of unknown function (DUF933) AFERRID_02780 PF07883 Cupin domain AFERRID_02780 PF01381 Helix-turn-helix AFERRID_02790 PF00361 Proton-conducting membrane transporter AFERRID_02830 PF00146 NADH dehydrogenase AFERRID_02850 PF00361 Proton-conducting membrane transporter AFERRID_02860 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFERRID_02860 PF00374 Nickel-dependent hydrogenase AFERRID_02860 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFERRID_02870 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFERRID_02890 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFERRID_02890 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFERRID_02900 PF08406 CbbQ/NirQ/NorQ C-terminal AFERRID_02900 PF07728 AAA domain (dynein-related subfamily) AFERRID_02910 PF00092 von Willebrand factor type A domain AFERRID_02920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_02920 PF03466 LysR substrate binding domain AFERRID_02930 PF03831 PhnA domain AFERRID_02930 PF08274 PhnA Zinc-Ribbon AFERRID_02940 PF14883 Hypothetical glycosyl hydrolase family 13 AFERRID_02940 PF01522 Polysaccharide deacetylase AFERRID_02960 PF00144 Beta-lactamase AFERRID_02970 PF00293 NUDIX domain AFERRID_02980 PF00293 NUDIX domain AFERRID_02990 PF00849 RNA pseudouridylate synthase AFERRID_02990 PF01479 S4 domain AFERRID_03000 PF04371 Porphyromonas-type peptidyl-arginine deiminase AFERRID_03010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFERRID_03010 PF01568 Molydopterin dinucleotide binding domain AFERRID_03010 PF00384 Molybdopterin oxidoreductase AFERRID_03020 PF13247 4Fe-4S dicluster domain AFERRID_03060 PF01790 Prolipoprotein diacylglyceryl transferase AFERRID_03070 PF00580 UvrD/REP helicase N-terminal domain AFERRID_03070 PF13361 UvrD-like helicase C-terminal domain AFERRID_03080 PF01649 Ribosomal protein S20 AFERRID_03090 PF08402 TOBE domain AFERRID_03090 PF00005 ABC transporter AFERRID_03100 PF00528 Binding-protein-dependent transport system inner membrane component AFERRID_03120 PF00149 Calcineurin-like phosphoesterase AFERRID_03130 PF00270 DEAD/DEAH box helicase AFERRID_03130 PF00271 Helicase conserved C-terminal domain AFERRID_03130 PF16124 RecQ zinc-binding AFERRID_03130 PF09382 RQC domain AFERRID_03130 PF00570 HRDC domain AFERRID_03140 PF01491 Frataxin-like domain AFERRID_03180 PF03739 Lipopolysaccharide export system permease LptF/LptG AFERRID_03190 PF00883 Cytosol aminopeptidase family, catalytic domain AFERRID_03190 PF02789 Cytosol aminopeptidase family, N-terminal domain AFERRID_03220 PF10458 Valyl tRNA synthetase tRNA binding arm AFERRID_03220 PF00133 tRNA synthetases class I (I, L, M and V) AFERRID_03220 PF08264 Anticodon-binding domain of tRNA AFERRID_03230 PF06965 Na+/H+ antiporter 1 AFERRID_03240 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFERRID_03240 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFERRID_03260 PF00440 Bacterial regulatory proteins, tetR family AFERRID_03260 PF16925 Tetracyclin repressor-like, C-terminal domain AFERRID_03270 PF01738 Dienelactone hydrolase family AFERRID_03280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFERRID_03300 PF05656 Protein of unknown function (DUF805) AFERRID_03340 PF13419 Haloacid dehalogenase-like hydrolase AFERRID_03350 PF01479 S4 domain AFERRID_03350 PF00849 RNA pseudouridylate synthase AFERRID_03360 PF12111 Polyribonucleotide phosphorylase C terminal AFERRID_03360 PF00575 S1 RNA binding domain AFERRID_03360 PF10150 Ribonuclease E/G family AFERRID_03370 PF01406 tRNA synthetases class I (C) catalytic domain AFERRID_03370 PF09190 DALR domain AFERRID_03380 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFERRID_03390 PF17092 Penicillin-binding protein OB-like domain AFERRID_03390 PF00912 Transglycosylase AFERRID_03390 PF00905 Penicillin binding protein transpeptidase domain AFERRID_03400 PF17092 Penicillin-binding protein OB-like domain AFERRID_03400 PF00912 Transglycosylase AFERRID_03400 PF00905 Penicillin binding protein transpeptidase domain AFERRID_03430 PF13419 Haloacid dehalogenase-like hydrolase AFERRID_03440 PF00072 Response regulator receiver domain AFERRID_03440 PF00486 Transcriptional regulatory protein, C terminal AFERRID_03450 PF13493 Domain of unknown function (DUF4118) AFERRID_03450 PF13492 GAF domain AFERRID_03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_03450 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_03450 PF02702 Osmosensitive K+ channel His kinase sensor domain AFERRID_03460 PF02702 Osmosensitive K+ channel His kinase sensor domain AFERRID_03460 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_03460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_03460 PF13493 Domain of unknown function (DUF4118) AFERRID_03460 PF13492 GAF domain AFERRID_03490 PF03814 Potassium-transporting ATPase A subunit AFERRID_03520 PF02669 K+-transporting ATPase, c chain AFERRID_03530 PF03989 DNA gyrase C-terminal domain, beta-propeller AFERRID_03530 PF00521 DNA gyrase/topoisomerase IV, subunit A AFERRID_03550 PF01472 PUA domain AFERRID_03550 PF00696 Amino acid kinase family AFERRID_03570 PF00543 Nitrogen regulatory protein P-II AFERRID_03580 PF00999 Sodium/hydrogen exchanger family AFERRID_03680 PF01925 Sulfite exporter TauE/SafE AFERRID_03700 PF01808 AICARFT/IMPCHase bienzyme AFERRID_03700 PF02142 MGS-like domain AFERRID_03710 PF02843 Phosphoribosylglycinamide synthetase, C domain AFERRID_03710 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFERRID_03710 PF02844 Phosphoribosylglycinamide synthetase, N domain AFERRID_03720 PF01300 Telomere recombination AFERRID_03730 PF01218 Coproporphyrinogen III oxidase AFERRID_03740 PF01180 Dihydroorotate dehydrogenase AFERRID_03770 PF04185 Phosphoesterase family AFERRID_03790 PF02472 Biopolymer transport protein ExbD/TolR AFERRID_03800 PF01618 MotA/TolQ/ExbB proton channel family AFERRID_03890 PF00083 Sugar (and other) transporter AFERRID_03910 PF00300 Histidine phosphatase superfamily (branch 1) AFERRID_03930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_03930 PF00672 HAMP domain AFERRID_03930 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_03940 PF00486 Transcriptional regulatory protein, C terminal AFERRID_03940 PF00072 Response regulator receiver domain AFERRID_03950 PF00929 Exonuclease AFERRID_03960 PF00296 Luciferase-like monooxygenase AFERRID_03990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFERRID_03990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFERRID_03990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFERRID_03990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFERRID_04010 PF00689 Cation transporting ATPase, C-terminus AFERRID_04010 PF00690 Cation transporter/ATPase, N-terminus AFERRID_04020 PF01292 Prokaryotic cytochrome b561 AFERRID_04040 PF07690 Major Facilitator Superfamily AFERRID_04050 PF03466 LysR substrate binding domain AFERRID_04050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_04060 PF04545 Sigma-70, region 4 AFERRID_04060 PF04546 Sigma-70, non-essential region AFERRID_04060 PF03979 Sigma-70 factor, region 1.1 AFERRID_04060 PF00140 Sigma-70 factor, region 1.2 AFERRID_04060 PF04542 Sigma-70 region 2 AFERRID_04060 PF04539 Sigma-70 region 3 AFERRID_04070 PF10410 DnaB-helicase binding domain of primase AFERRID_04070 PF08278 DNA primase DnaG DnaB-binding AFERRID_04070 PF08275 DNA primase catalytic core, N-terminal domain AFERRID_04070 PF01807 CHC2 zinc finger AFERRID_04080 PF00488 MutS domain V AFERRID_04080 PF01713 Smr domain AFERRID_04100 PF01165 Ribosomal protein S21 AFERRID_04110 PF00140 Sigma-70 factor, region 1.2 AFERRID_04110 PF04545 Sigma-70, region 4 AFERRID_04110 PF04539 Sigma-70 region 3 AFERRID_04110 PF04542 Sigma-70 region 2 AFERRID_04120 PF01725 Ham1 family AFERRID_04130 PF03725 3' exoribonuclease family, domain 2 AFERRID_04130 PF01138 3' exoribonuclease family, domain 1 AFERRID_04160 PF04055 Radical SAM superfamily AFERRID_04160 PF06969 HemN C-terminal domain AFERRID_04180 PF00849 RNA pseudouridylate synthase AFERRID_04200 PF07690 Major Facilitator Superfamily AFERRID_04210 PF00768 D-alanyl-D-alanine carboxypeptidase AFERRID_04210 PF07943 Penicillin-binding protein 5, C-terminal domain AFERRID_04230 PF08241 Methyltransferase domain AFERRID_04250 PF01850 PIN domain AFERRID_04260 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AFERRID_04260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFERRID_04260 PF02769 AIR synthase related protein, C-terminal domain AFERRID_04270 PF01259 SAICAR synthetase AFERRID_04280 PF00206 Lyase AFERRID_04280 PF10397 Adenylosuccinate lyase C-terminus AFERRID_04300 PF00701 Dihydrodipicolinate synthetase family AFERRID_04310 PF03006 Haemolysin-III related AFERRID_04320 PF01520 N-acetylmuramoyl-L-alanine amidase AFERRID_04320 PF11741 AMIN domain AFERRID_04330 PF00085 Thioredoxin AFERRID_04340 PF00462 Glutaredoxin AFERRID_04350 PF00581 Rhodanese-like domain AFERRID_04370 PF00873 AcrB/AcrD/AcrF family AFERRID_04380 PF13533 Biotin-lipoyl like AFERRID_04400 PF01022 Bacterial regulatory protein, arsR family AFERRID_04410 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AFERRID_04440 PF00899 ThiF family AFERRID_04450 PF01026 TatD related DNase AFERRID_04460 PF01494 FAD binding domain AFERRID_04470 PF01494 FAD binding domain AFERRID_04480 PF04380 Membrane fusogenic activity AFERRID_04490 PF01078 Magnesium chelatase, subunit ChlI AFERRID_04490 PF13335 Magnesium chelatase, subunit ChlI C-terminal AFERRID_04500 PF00589 Phage integrase family AFERRID_04500 PF02899 Phage integrase, N-terminal SAM-like domain AFERRID_04530 PF01541 GIY-YIG catalytic domain AFERRID_04590 PF16363 GDP-mannose 4,6 dehydratase AFERRID_04600 PF01943 Polysaccharide biosynthesis protein AFERRID_04600 PF14667 Polysaccharide biosynthesis C-terminal domain AFERRID_04630 PF00535 Glycosyl transferase family 2 AFERRID_04690 PF02397 Bacterial sugar transferase AFERRID_04730 PF13335 Magnesium chelatase, subunit ChlI C-terminal AFERRID_04730 PF01078 Magnesium chelatase, subunit ChlI AFERRID_04750 PF16658 Class II release factor RF3, C-terminal domain AFERRID_04750 PF03144 Elongation factor Tu domain 2 AFERRID_04750 PF00009 Elongation factor Tu GTP binding domain AFERRID_04770 PF00814 Glycoprotease family AFERRID_04780 PF13307 Helicase C-terminal domain AFERRID_04780 PF04851 Type III restriction enzyme, res subunit AFERRID_04810 PF00877 NlpC/P60 family AFERRID_04840 PF02421 Ferrous iron transport protein B AFERRID_04840 PF07670 Nucleoside recognition AFERRID_04840 PF07664 Ferrous iron transport protein B C terminus AFERRID_04840 PF17910 FeoB cytosolic helical domain AFERRID_04860 PF00795 Carbon-nitrogen hydrolase AFERRID_04870 PF07722 Peptidase C26 AFERRID_04880 PF09335 SNARE associated Golgi protein AFERRID_04940 PF00850 Histone deacetylase domain AFERRID_04960 PF07728 AAA domain (dynein-related subfamily) AFERRID_04960 PF08406 CbbQ/NirQ/NorQ C-terminal AFERRID_05050 PF03099 Biotin/lipoate A/B protein ligase family AFERRID_05070 PF01597 Glycine cleavage H-protein AFERRID_05090 PF01597 Glycine cleavage H-protein AFERRID_05100 PF02754 Cysteine-rich domain AFERRID_05130 PF01593 Flavin containing amine oxidoreductase AFERRID_05160 PF13686 DsrE/DsrF/DrsH-like family AFERRID_05170 PF01206 Sulfurtransferase TusA AFERRID_05180 PF00581 Rhodanese-like domain AFERRID_05190 PF06463 Molybdenum Cofactor Synthesis C AFERRID_05190 PF04055 Radical SAM superfamily AFERRID_05210 PF01967 MoaC family AFERRID_05240 PF04085 rod shape-determining protein MreC AFERRID_05260 PF00905 Penicillin binding protein transpeptidase domain AFERRID_05260 PF03717 Penicillin-binding Protein dimerisation domain AFERRID_05270 PF01098 Cell cycle protein AFERRID_05280 PF00768 D-alanyl-D-alanine carboxypeptidase AFERRID_05280 PF07943 Penicillin-binding protein 5, C-terminal domain AFERRID_05300 PF03099 Biotin/lipoate A/B protein ligase family AFERRID_05310 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AFERRID_05310 PF04055 Radical SAM superfamily AFERRID_05400 PF02091 Glycyl-tRNA synthetase alpha subunit AFERRID_05410 PF02092 Glycyl-tRNA synthetase beta subunit AFERRID_05440 PF18030 RimK PreATP-grasp domain AFERRID_05440 PF08443 RimK-like ATP-grasp domain AFERRID_05480 PF02677 Epoxyqueuosine reductase QueH AFERRID_05500 PF01510 N-acetylmuramoyl-L-alanine amidase AFERRID_05540 PF02798 Glutathione S-transferase, N-terminal domain AFERRID_05540 PF00043 Glutathione S-transferase, C-terminal domain AFERRID_05550 PF01638 HxlR-like helix-turn-helix AFERRID_05560 PF08502 LeuA allosteric (dimerisation) domain AFERRID_05560 PF00682 HMGL-like AFERRID_05570 PF02954 Bacterial regulatory protein, Fis family AFERRID_05570 PF01590 GAF domain AFERRID_05570 PF00158 Sigma-54 interaction domain AFERRID_05650 PF00216 Bacterial DNA-binding protein AFERRID_05660 PF03147 Ferredoxin-fold anticodon binding domain AFERRID_05660 PF03484 tRNA synthetase B5 domain AFERRID_05660 PF03483 B3/4 domain AFERRID_05660 PF01588 Putative tRNA binding domain AFERRID_05660 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFERRID_05670 PF01409 tRNA synthetases class II core domain (F) AFERRID_05670 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFERRID_05680 PF00453 Ribosomal protein L20 AFERRID_05690 PF01632 Ribosomal protein L35 AFERRID_05700 PF00707 Translation initiation factor IF-3, C-terminal domain AFERRID_05700 PF05198 Translation initiation factor IF-3, N-terminal domain AFERRID_05710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFERRID_05710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFERRID_05710 PF02824 TGS domain AFERRID_05710 PF03129 Anticodon binding domain AFERRID_05720 PF00361 Proton-conducting membrane transporter AFERRID_05730 PF00361 Proton-conducting membrane transporter AFERRID_05730 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AFERRID_05740 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFERRID_05740 PF00361 Proton-conducting membrane transporter AFERRID_05750 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFERRID_05760 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFERRID_05770 PF12838 4Fe-4S dicluster domain AFERRID_05780 PF00146 NADH dehydrogenase AFERRID_05790 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFERRID_05790 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AFERRID_05790 PF00384 Molybdopterin oxidoreductase AFERRID_05800 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFERRID_05800 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFERRID_05800 PF10531 SLBB domain AFERRID_05810 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFERRID_05810 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFERRID_05810 PF10531 SLBB domain AFERRID_05830 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFERRID_05840 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFERRID_05850 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFERRID_05860 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFERRID_05870 PF03840 Preprotein translocase SecG subunit AFERRID_05880 PF00121 Triosephosphate isomerase AFERRID_05890 PF00121 Triosephosphate isomerase AFERRID_05900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFERRID_05900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFERRID_05900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFERRID_05900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFERRID_05910 PF00809 Pterin binding enzyme AFERRID_05920 PF00004 ATPase family associated with various cellular activities (AAA) AFERRID_05920 PF17862 AAA+ lid domain AFERRID_05920 PF01434 Peptidase family M41 AFERRID_05920 PF06480 FtsH Extracellular AFERRID_05930 PF01523 Putative modulator of DNA gyrase AFERRID_05940 PF02867 Ribonucleotide reductase, barrel domain AFERRID_05940 PF03477 ATP cone domain AFERRID_05940 PF00317 Ribonucleotide reductase, all-alpha domain AFERRID_05950 PF00268 Ribonucleotide reductase, small chain AFERRID_06090 PF01965 DJ-1/PfpI family AFERRID_06130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFERRID_06150 PF01548 Transposase AFERRID_06150 PF02371 Transposase IS116/IS110/IS902 family AFERRID_06210 PF00692 dUTPase AFERRID_06220 PF10609 NUBPL iron-transfer P-loop NTPase AFERRID_06240 PF01113 Dihydrodipicolinate reductase, N-terminus AFERRID_06240 PF05173 Dihydrodipicolinate reductase, C-terminus AFERRID_06250 PF01556 DnaJ C terminal domain AFERRID_06250 PF00226 DnaJ domain AFERRID_06250 PF00684 DnaJ central domain AFERRID_06260 PF00012 Hsp70 protein AFERRID_06270 PF01025 GrpE AFERRID_06280 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AFERRID_06280 PF01628 HrcA protein C terminal domain AFERRID_06290 PF01628 HrcA protein C terminal domain AFERRID_06300 PF00471 Ribosomal protein L33 AFERRID_06310 PF00830 Ribosomal L28 family AFERRID_06320 PF01588 Putative tRNA binding domain AFERRID_06320 PF09334 tRNA synthetases class I (M) AFERRID_06330 PF00793 DAHP synthetase I family AFERRID_06330 PF18152 DAHP synthase ferredoxin-like domain AFERRID_06340 PF00206 Lyase AFERRID_06340 PF10415 Fumarase C C-terminus AFERRID_06350 PF01432 Peptidase family M3 AFERRID_06350 PF08439 Oligopeptidase F AFERRID_06390 PF00534 Glycosyl transferases group 1 AFERRID_06390 PF08323 Starch synthase catalytic domain AFERRID_06400 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFERRID_06400 PF00753 Metallo-beta-lactamase superfamily AFERRID_06400 PF10996 Beta-Casp domain AFERRID_06420 PF10576 Iron-sulfur binding domain of endonuclease III AFERRID_06420 PF00633 Helix-hairpin-helix motif AFERRID_06420 PF00730 HhH-GPD superfamily base excision DNA repair protein AFERRID_06480 PF13533 Biotin-lipoyl like AFERRID_06490 PF03412 Peptidase C39 family AFERRID_06490 PF00005 ABC transporter AFERRID_06490 PF00664 ABC transporter transmembrane region AFERRID_06510 PF00072 Response regulator receiver domain AFERRID_06510 PF00158 Sigma-54 interaction domain AFERRID_06510 PF02954 Bacterial regulatory protein, Fis family AFERRID_06570 PF00437 Type II/IV secretion system protein AFERRID_06600 PF00263 Bacterial type II and III secretion system protein AFERRID_06600 PF13629 Pilus formation protein N terminal region AFERRID_06600 PF04972 BON domain AFERRID_06710 PF13181 Tetratricopeptide repeat AFERRID_06810 PF00034 Cytochrome c AFERRID_06830 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AFERRID_06830 PF00355 Rieske [2Fe-2S] domain AFERRID_06840 PF00033 Cytochrome b/b6/petB AFERRID_06840 PF00032 Cytochrome b(C-terminal)/b6/petD AFERRID_06850 PF02167 Cytochrome C1 family AFERRID_06890 PF01728 FtsJ-like methyltransferase AFERRID_06900 PF01985 CRS1 / YhbY (CRM) domain AFERRID_06910 PF04379 ApaG domain AFERRID_06920 PF01209 ubiE/COQ5 methyltransferase family AFERRID_06950 PF01678 Diaminopimelate epimerase AFERRID_06980 PF02899 Phage integrase, N-terminal SAM-like domain AFERRID_06980 PF00589 Phage integrase family AFERRID_06990 PF00227 Proteasome subunit AFERRID_07000 PF00004 ATPase family associated with various cellular activities (AAA) AFERRID_07000 PF07724 AAA domain (Cdc48 subfamily) AFERRID_07020 PF04542 Sigma-70 region 2 AFERRID_07020 PF04545 Sigma-70, region 4 AFERRID_07020 PF00140 Sigma-70 factor, region 1.2 AFERRID_07030 PF18075 FtsX extracellular domain AFERRID_07040 PF00005 ABC transporter AFERRID_07050 PF02881 SRP54-type protein, helical bundle domain AFERRID_07050 PF00448 SRP54-type protein, GTPase domain AFERRID_07070 PF01467 Cytidylyltransferase-like AFERRID_07080 PF00037 4Fe-4S binding domain AFERRID_07090 PF00350 Dynamin family AFERRID_07100 PF06827 Zinc finger found in FPG and IleRS AFERRID_07100 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFERRID_07100 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFERRID_07110 PF05175 Methyltransferase small domain AFERRID_07110 PF17827 PrmC N-terminal domain AFERRID_07120 PF00472 RF-1 domain AFERRID_07120 PF03462 PCRF domain AFERRID_07140 PF03550 Outer membrane lipoprotein LolB AFERRID_07150 PF00288 GHMP kinases N terminal domain AFERRID_07150 PF08544 GHMP kinases C terminal AFERRID_07160 PF14572 Phosphoribosyl synthetase-associated domain AFERRID_07160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFERRID_07180 PF04221 RelB antitoxin AFERRID_07190 PF03458 UPF0126 domain AFERRID_07290 PF00535 Glycosyl transferase family 2 AFERRID_07300 PF00483 Nucleotidyl transferase AFERRID_07410 PF18818 Metallopeptidase superfamily domain AFERRID_07410 PF13362 Toprim domain AFERRID_07410 PF08401 Domain of unknown function (DUF1738) AFERRID_07430 PF12804 MobA-like NTP transferase domain AFERRID_07450 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFERRID_07450 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFERRID_07460 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_07460 PF01799 [2Fe-2S] binding domain AFERRID_07490 PF02594 Uncharacterised ACR, YggU family COG1872 AFERRID_07540 PF00113 Enolase, C-terminal TIM barrel domain AFERRID_07540 PF03952 Enolase, N-terminal domain AFERRID_07570 PF01381 Helix-turn-helix AFERRID_07610 PF10091 Putative glucoamylase AFERRID_07610 PF06165 Glycosyltransferase family 36 AFERRID_07610 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AFERRID_07680 PF00557 Metallopeptidase family M24 AFERRID_07680 PF05195 Aminopeptidase P, N-terminal domain AFERRID_07700 PF18073 Rubredoxin metal binding domain AFERRID_07710 PF01168 Alanine racemase, N-terminal domain AFERRID_07710 PF00842 Alanine racemase, C-terminal domain AFERRID_07720 PF03796 DnaB-like helicase C terminal domain AFERRID_07720 PF00772 DnaB-like helicase N terminal domain AFERRID_07730 PF03948 Ribosomal protein L9, C-terminal domain AFERRID_07730 PF01281 Ribosomal protein L9, N-terminal domain AFERRID_07750 PF01084 Ribosomal protein S18 AFERRID_07760 PF01250 Ribosomal protein S6 AFERRID_07770 PF00933 Glycosyl hydrolase family 3 N terminal domain AFERRID_07780 PF13520 Amino acid permease AFERRID_07800 PF05958 tRNA (Uracil-5-)-methyltransferase AFERRID_07800 PF01938 TRAM domain AFERRID_07840 PF00291 Pyridoxal-phosphate dependent enzyme AFERRID_07850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFERRID_07860 PF01145 SPFH domain / Band 7 family AFERRID_07880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFERRID_07880 PF02806 Alpha amylase, C-terminal all-beta domain AFERRID_07880 PF00128 Alpha amylase, catalytic domain AFERRID_07890 PF00483 Nucleotidyl transferase AFERRID_07910 PF09094 Domain of unknown function (DUF1925) AFERRID_07910 PF09095 Domain of unknown function (DUF1926) AFERRID_07910 PF03065 Glycosyl hydrolase family 57 AFERRID_07920 PF00480 ROK family AFERRID_07930 PF01177 Asp/Glu/Hydantoin racemase AFERRID_07940 PF04286 Protein of unknown function (DUF445) AFERRID_07960 PF00436 Single-strand binding protein family AFERRID_07970 PF17755 UvrA DNA-binding domain AFERRID_07970 PF17760 UvrA interaction domain AFERRID_07990 PF00085 Thioredoxin AFERRID_08000 PF13180 PDZ domain AFERRID_08010 PF02899 Phage integrase, N-terminal SAM-like domain AFERRID_08010 PF00589 Phage integrase family AFERRID_08030 PF01245 Ribosomal protein L19 AFERRID_08040 PF01746 tRNA (Guanine-1)-methyltransferase AFERRID_08050 PF01782 RimM N-terminal domain AFERRID_08050 PF05239 PRC-barrel domain AFERRID_08060 PF00886 Ribosomal protein S16 AFERRID_08070 PF02881 SRP54-type protein, helical bundle domain AFERRID_08070 PF00448 SRP54-type protein, GTPase domain AFERRID_08070 PF02978 Signal peptide binding domain AFERRID_08080 PF03358 NADPH-dependent FMN reductase AFERRID_08090 PF02040 Arsenical pump membrane protein AFERRID_08110 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFERRID_08120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFERRID_08130 PF00005 ABC transporter AFERRID_08210 PF01597 Glycine cleavage H-protein AFERRID_08270 PF00691 OmpA family AFERRID_08270 PF13488 Glycine zipper AFERRID_08350 PF00263 Bacterial type II and III secretion system protein AFERRID_08350 PF03958 Bacterial type II/III secretion system short domain AFERRID_08360 PF00437 Type II/IV secretion system protein AFERRID_08420 PF03167 Uracil DNA glycosylase superfamily AFERRID_08470 PF00905 Penicillin binding protein transpeptidase domain AFERRID_08470 PF03717 Penicillin-binding Protein dimerisation domain AFERRID_08490 PF00348 Polyprenyl synthetase AFERRID_08510 PF00158 Sigma-54 interaction domain AFERRID_08510 PF00072 Response regulator receiver domain AFERRID_08510 PF02954 Bacterial regulatory protein, Fis family AFERRID_08520 PF00989 PAS fold AFERRID_08520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_08520 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_08540 PF14403 Circularly permuted ATP-grasp type 2 AFERRID_08550 PF04168 A predicted alpha-helical domain with a conserved ER motif. AFERRID_08550 PF14403 Circularly permuted ATP-grasp type 2 AFERRID_08570 PF06798 PrkA serine protein kinase C-terminal domain AFERRID_08570 PF08298 PrkA AAA domain AFERRID_08580 PF00909 Ammonium Transporter Family AFERRID_08590 PF04285 Protein of unknown function (DUF444) AFERRID_08600 PF04293 SpoVR like protein AFERRID_08630 PF00543 Nitrogen regulatory protein P-II AFERRID_08640 PF00909 Ammonium Transporter Family AFERRID_08680 PF05036 Sporulation related domain AFERRID_08680 PF03330 Lytic transglycolase AFERRID_08700 PF07885 Ion channel AFERRID_08700 PF02254 TrkA-N domain AFERRID_08710 PF07943 Penicillin-binding protein 5, C-terminal domain AFERRID_08710 PF00768 D-alanyl-D-alanine carboxypeptidase AFERRID_08720 PF00342 Phosphoglucose isomerase AFERRID_08750 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFERRID_08790 PF06736 Protein of unknown function (DUF1211) AFERRID_08800 PF17946 RecC C-terminal domain AFERRID_08820 PF12705 PD-(D/E)XK nuclease superfamily AFERRID_08820 PF00580 UvrD/REP helicase N-terminal domain AFERRID_08820 PF13361 UvrD-like helicase C-terminal domain AFERRID_08830 PF13538 UvrD-like helicase C-terminal domain AFERRID_08840 PF13538 UvrD-like helicase C-terminal domain AFERRID_08850 PF13538 UvrD-like helicase C-terminal domain AFERRID_08940 PF00690 Cation transporter/ATPase, N-terminus AFERRID_08940 PF00689 Cation transporting ATPase, C-terminus AFERRID_08950 PF01641 SelR domain AFERRID_08960 PF01625 Peptide methionine sulfoxide reductase AFERRID_08980 PF01467 Cytidylyltransferase-like AFERRID_09000 PF02590 Predicted SPOUT methyltransferase AFERRID_09030 PF02545 Maf-like protein AFERRID_09040 PF00575 S1 RNA binding domain AFERRID_09040 PF10150 Ribonuclease E/G family AFERRID_09050 PF00072 Response regulator receiver domain AFERRID_09050 PF00158 Sigma-54 interaction domain AFERRID_09070 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_09070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_09090 PF04362 Bacterial Fe(2+) trafficking AFERRID_09100 PF01050 Mannose-6-phosphate isomerase AFERRID_09100 PF00483 Nucleotidyl transferase AFERRID_09110 PF02563 Polysaccharide biosynthesis/export protein AFERRID_09150 PF01061 ABC-2 type transporter AFERRID_09210 PF16363 GDP-mannose 4,6 dehydratase AFERRID_09240 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AFERRID_09300 PF00005 ABC transporter AFERRID_09340 PF13439 Glycosyltransferase Family 4 AFERRID_09340 PF00534 Glycosyl transferases group 1 AFERRID_09350 PF00005 ABC transporter AFERRID_09350 PF00664 ABC transporter transmembrane region AFERRID_09360 PF13673 Acetyltransferase (GNAT) domain AFERRID_09370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFERRID_09400 PF00005 ABC transporter AFERRID_09400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFERRID_09410 PF00005 ABC transporter AFERRID_09410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFERRID_09420 PF12911 N-terminal TM domain of oligopeptide transport permease C AFERRID_09420 PF00528 Binding-protein-dependent transport system inner membrane component AFERRID_09430 PF00528 Binding-protein-dependent transport system inner membrane component AFERRID_09480 PF01914 MarC family integral membrane protein AFERRID_09490 PF00056 lactate/malate dehydrogenase, NAD binding domain AFERRID_09490 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFERRID_09520 PF01618 MotA/TolQ/ExbB proton channel family AFERRID_09530 PF02472 Biopolymer transport protein ExbD/TolR AFERRID_09560 PF14765 Polyketide synthase dehydratase AFERRID_09560 PF00550 Phosphopantetheine attachment site AFERRID_09560 PF00698 Acyl transferase domain AFERRID_09560 PF08240 Alcohol dehydrogenase GroES-like domain AFERRID_09560 PF00107 Zinc-binding dehydrogenase AFERRID_09560 PF16197 Ketoacyl-synthetase C-terminal extension AFERRID_09560 PF00109 Beta-ketoacyl synthase, N-terminal domain AFERRID_09560 PF02801 Beta-ketoacyl synthase, C-terminal domain AFERRID_09560 PF08659 KR domain AFERRID_09570 PF00155 Aminotransferase class I and II AFERRID_09580 PF05159 Capsule polysaccharide biosynthesis protein AFERRID_09590 PF05159 Capsule polysaccharide biosynthesis protein AFERRID_09600 PF00106 short chain dehydrogenase AFERRID_09620 PF00633 Helix-hairpin-helix motif AFERRID_09620 PF10576 Iron-sulfur binding domain of endonuclease III AFERRID_09620 PF00730 HhH-GPD superfamily base excision DNA repair protein AFERRID_09620 PF14815 NUDIX domain AFERRID_09640 PF05524 PEP-utilising enzyme, N-terminal AFERRID_09640 PF00391 PEP-utilising enzyme, mobile domain AFERRID_09640 PF02896 PEP-utilising enzyme, TIM barrel domain AFERRID_09650 PF00381 PTS HPr component phosphorylation site AFERRID_09670 PF03668 P-loop ATPase protein family AFERRID_09680 PF07475 HPr Serine kinase C-terminal domain AFERRID_09680 PF02603 HPr Serine kinase N terminus AFERRID_09690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFERRID_09690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFERRID_09700 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFERRID_09710 PF00309 Sigma-54 factor, Activator interacting domain (AID) AFERRID_09710 PF04963 Sigma-54 factor, core binding domain AFERRID_09710 PF04552 Sigma-54, DNA binding domain AFERRID_09720 PF00005 ABC transporter AFERRID_09730 PF03968 OstA-like protein AFERRID_09760 PF00571 CBS domain AFERRID_09760 PF01380 SIS domain AFERRID_09790 PF00483 Nucleotidyl transferase AFERRID_09800 PF01636 Phosphotransferase enzyme family AFERRID_09810 PF03968 OstA-like protein AFERRID_09810 PF04453 LPS transport system D AFERRID_09820 PF09312 SurA N-terminal domain AFERRID_09820 PF00639 PPIC-type PPIASE domain AFERRID_09830 PF01061 ABC-2 type transporter AFERRID_09840 PF01061 ABC-2 type transporter AFERRID_09860 PF00462 Glutaredoxin AFERRID_09870 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFERRID_09880 PF01634 ATP phosphoribosyltransferase AFERRID_09890 PF00815 Histidinol dehydrogenase AFERRID_09900 PF00155 Aminotransferase class I and II AFERRID_09910 PF00475 Imidazoleglycerol-phosphate dehydratase AFERRID_09920 PF00117 Glutamine amidotransferase class-I AFERRID_09930 PF00977 Histidine biosynthesis protein AFERRID_09940 PF00977 Histidine biosynthesis protein AFERRID_09950 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFERRID_09950 PF01502 Phosphoribosyl-AMP cyclohydrolase AFERRID_09960 PF02416 mttA/Hcf106 family AFERRID_09970 PF02416 mttA/Hcf106 family AFERRID_09980 PF00902 Sec-independent protein translocase protein (TatC) AFERRID_09990 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFERRID_09990 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFERRID_10000 PF00101 Ribulose bisphosphate carboxylase, small chain AFERRID_10010 PF07728 AAA domain (dynein-related subfamily) AFERRID_10010 PF08406 CbbQ/NirQ/NorQ C-terminal AFERRID_10030 PF00216 Bacterial DNA-binding protein AFERRID_10040 PF00563 EAL domain AFERRID_10040 PF00990 Diguanylate cyclase, GGDEF domain AFERRID_10040 PF03707 Bacterial signalling protein N terminal repeat AFERRID_10050 PF01979 Amidohydrolase family AFERRID_10060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFERRID_10060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFERRID_10070 PF00156 Phosphoribosyl transferase domain AFERRID_10080 PF03652 Holliday junction resolvase AFERRID_10100 PF02622 Uncharacterized ACR, COG1678 AFERRID_10110 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AFERRID_10110 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AFERRID_10130 PF00285 Citrate synthase, C-terminal domain AFERRID_10140 PF01521 Iron-sulphur cluster biosynthesis AFERRID_10150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_10150 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_10160 PF02780 Transketolase, C-terminal domain AFERRID_10160 PF00364 Biotin-requiring enzyme AFERRID_10160 PF02779 Transketolase, pyrimidine binding domain AFERRID_10170 PF00676 Dehydrogenase E1 component AFERRID_10200 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFERRID_10200 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFERRID_10210 PF00380 Ribosomal protein S9/S16 AFERRID_10220 PF00572 Ribosomal protein L13 AFERRID_10240 PF00881 Nitroreductase family AFERRID_10250 PF03734 L,D-transpeptidase catalytic domain AFERRID_10250 PF17969 L,D-transpeptidase C-terminal domain AFERRID_10270 PF02403 Seryl-tRNA synthetase N-terminal domain AFERRID_10270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFERRID_10280 PF16193 AAA C-terminal domain AFERRID_10280 PF12002 MgsA AAA+ ATPase C terminal AFERRID_10280 PF00004 ATPase family associated with various cellular activities (AAA) AFERRID_10300 PF03548 Outer membrane lipoprotein carrier protein LolA AFERRID_10310 PF01580 FtsK/SpoIIIE family AFERRID_10310 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AFERRID_10310 PF09397 Ftsk gamma domain AFERRID_10310 PF17854 FtsK alpha domain AFERRID_10320 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_10340 PF00376 MerR family regulatory protein AFERRID_10340 PF09278 MerR, DNA binding AFERRID_10350 PF01142 tRNA pseudouridine synthase D (TruD) AFERRID_10360 PF02542 YgbB family AFERRID_10370 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFERRID_10380 PF02559 CarD-like/TRCF domain AFERRID_10380 PF00270 DEAD/DEAH box helicase AFERRID_10380 PF00271 Helicase conserved C-terminal domain AFERRID_10380 PF03461 TRCF domain AFERRID_10380 PF17757 UvrB interaction domain AFERRID_10390 PF18429 Domain of unknown function (DUF5609) AFERRID_10400 PF08534 Redoxin AFERRID_10400 PF00462 Glutaredoxin AFERRID_10410 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_10410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_10420 PF01048 Phosphorylase superfamily AFERRID_10470 PF01569 PAP2 superfamily AFERRID_10490 PF04002 RadC-like JAB domain AFERRID_10500 PF04127 DNA / pantothenate metabolism flavoprotein AFERRID_10500 PF02441 Flavoprotein AFERRID_10510 PF00692 dUTPase AFERRID_10520 PF01196 Ribosomal protein L17 AFERRID_10530 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFERRID_10530 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFERRID_10530 PF01000 RNA polymerase Rpb3/RpoA insert domain AFERRID_10540 PF01479 S4 domain AFERRID_10540 PF00163 Ribosomal protein S4/S9 N-terminal domain AFERRID_10550 PF00411 Ribosomal protein S11 AFERRID_10560 PF00416 Ribosomal protein S13/S18 AFERRID_10570 PF01176 Translation initiation factor 1A / IF-1 AFERRID_10580 PF05191 Adenylate kinase, active site lid AFERRID_10590 PF00344 SecY translocase AFERRID_10600 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFERRID_10610 PF00327 Ribosomal protein L30p/L7e AFERRID_10620 PF00333 Ribosomal protein S5, N-terminal domain AFERRID_10620 PF03719 Ribosomal protein S5, C-terminal domain AFERRID_10630 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFERRID_10640 PF00347 Ribosomal protein L6 AFERRID_10650 PF00410 Ribosomal protein S8 AFERRID_10660 PF00673 ribosomal L5P family C-terminus AFERRID_10660 PF00281 Ribosomal protein L5 AFERRID_10670 PF00467 KOW motif AFERRID_10670 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFERRID_10680 PF00238 Ribosomal protein L14p/L23e AFERRID_10690 PF00366 Ribosomal protein S17 AFERRID_10700 PF00831 Ribosomal L29 protein AFERRID_10710 PF00252 Ribosomal protein L16p/L10e AFERRID_10720 PF00189 Ribosomal protein S3, C-terminal domain AFERRID_10720 PF07650 KH domain AFERRID_10730 PF00237 Ribosomal protein L22p/L17e AFERRID_10740 PF00203 Ribosomal protein S19 AFERRID_10750 PF00181 Ribosomal Proteins L2, RNA binding domain AFERRID_10750 PF03947 Ribosomal Proteins L2, C-terminal domain AFERRID_10760 PF00276 Ribosomal protein L23 AFERRID_10770 PF00573 Ribosomal protein L4/L1 family AFERRID_10780 PF00297 Ribosomal protein L3 AFERRID_10790 PF00338 Ribosomal protein S10p/S20e AFERRID_10800 PF00009 Elongation factor Tu GTP binding domain AFERRID_10800 PF03144 Elongation factor Tu domain 2 AFERRID_10800 PF03143 Elongation factor Tu C-terminal domain AFERRID_10810 PF00009 Elongation factor Tu GTP binding domain AFERRID_10810 PF03144 Elongation factor Tu domain 2 AFERRID_10810 PF03764 Elongation factor G, domain IV AFERRID_10810 PF00679 Elongation factor G C-terminus AFERRID_10810 PF14492 Elongation Factor G, domain II AFERRID_10820 PF00177 Ribosomal protein S7p/S5e AFERRID_10830 PF00164 Ribosomal protein S12/S23 AFERRID_10840 PF04983 RNA polymerase Rpb1, domain 3 AFERRID_10840 PF04998 RNA polymerase Rpb1, domain 5 AFERRID_10840 PF00623 RNA polymerase Rpb1, domain 2 AFERRID_10840 PF04997 RNA polymerase Rpb1, domain 1 AFERRID_10840 PF05000 RNA polymerase Rpb1, domain 4 AFERRID_10850 PF10385 RNA polymerase beta subunit external 1 domain AFERRID_10850 PF04565 RNA polymerase Rpb2, domain 3 AFERRID_10850 PF00562 RNA polymerase Rpb2, domain 6 AFERRID_10850 PF04560 RNA polymerase Rpb2, domain 7 AFERRID_10850 PF04561 RNA polymerase Rpb2, domain 2 AFERRID_10850 PF04563 RNA polymerase beta subunit AFERRID_10860 PF00542 Ribosomal protein L7/L12 C-terminal domain AFERRID_10860 PF16320 Ribosomal protein L7/L12 dimerisation domain AFERRID_10870 PF00466 Ribosomal protein L10 AFERRID_10880 PF00687 Ribosomal protein L1p/L10e family AFERRID_10890 PF03946 Ribosomal protein L11, N-terminal domain AFERRID_10890 PF00298 Ribosomal protein L11, RNA binding domain AFERRID_10900 PF00467 KOW motif AFERRID_10900 PF02357 Transcription termination factor nusG AFERRID_10920 PF03144 Elongation factor Tu domain 2 AFERRID_10920 PF00009 Elongation factor Tu GTP binding domain AFERRID_10920 PF03143 Elongation factor Tu C-terminal domain AFERRID_10930 PF00691 OmpA family AFERRID_10930 PF04972 BON domain AFERRID_10940 PF03109 ABC1 family AFERRID_10980 PF01029 NusB family AFERRID_10990 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFERRID_11000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFERRID_11000 PF00925 GTP cyclohydrolase II AFERRID_11010 PF00677 Lumazine binding domain AFERRID_11020 PF01872 RibD C-terminal domain AFERRID_11020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFERRID_11030 PF03477 ATP cone domain AFERRID_11040 PF00464 Serine hydroxymethyltransferase AFERRID_11060 PF00561 alpha/beta hydrolase fold AFERRID_11070 PF07021 Methionine biosynthesis protein MetW AFERRID_11070 PF00561 alpha/beta hydrolase fold AFERRID_11090 PF01209 ubiE/COQ5 methyltransferase family AFERRID_11100 PF01717 Cobalamin-independent synthase, Catalytic domain AFERRID_11100 PF08267 Cobalamin-independent synthase, N-terminal domain AFERRID_11110 PF00484 Carbonic anhydrase AFERRID_11120 PF01740 STAS domain AFERRID_11120 PF00916 Sulfate permease family AFERRID_11130 PF00171 Aldehyde dehydrogenase family AFERRID_11130 PF01619 Proline dehydrogenase AFERRID_11130 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AFERRID_11130 PF14850 DNA-binding domain of Proline dehydrogenase AFERRID_11150 PF02384 N-6 DNA Methylase AFERRID_11150 PF12161 HsdM N-terminal domain AFERRID_11180 PF12008 Type I restriction and modification enzyme - subunit R C terminal AFERRID_11180 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFERRID_11180 PF18766 SWI2/SNF2 ATPase AFERRID_11190 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AFERRID_11200 PF00829 Ribosomal prokaryotic L21 protein AFERRID_11210 PF01016 Ribosomal L27 protein AFERRID_11220 PF01018 GTP1/OBG AFERRID_11220 PF01926 50S ribosome-binding GTPase AFERRID_11230 PF01472 PUA domain AFERRID_11230 PF00696 Amino acid kinase family AFERRID_11240 PF01475 Ferric uptake regulator family AFERRID_11250 PF04355 SmpA / OmlA family AFERRID_11260 PF03364 Polyketide cyclase / dehydrase and lipid transport AFERRID_11270 PF13396 Phospholipase_D-nuclease N-terminal AFERRID_11270 PF13091 PLD-like domain AFERRID_11280 PF01668 SmpB protein AFERRID_11320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFERRID_11320 PF02222 ATP-grasp domain AFERRID_11330 PF00731 AIR carboxylase AFERRID_11340 PF02390 Putative methyltransferase AFERRID_11350 PF00027 Cyclic nucleotide-binding domain AFERRID_11350 PF13545 Crp-like helix-turn-helix domain AFERRID_11360 PF00753 Metallo-beta-lactamase superfamily AFERRID_11400 PF00535 Glycosyl transferase family 2 AFERRID_11410 PF00437 Type II/IV secretion system protein AFERRID_11430 PF00437 Type II/IV secretion system protein AFERRID_11440 PF00437 Type II/IV secretion system protein AFERRID_11450 PF01168 Alanine racemase, N-terminal domain AFERRID_11460 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFERRID_11460 PF03807 NADP oxidoreductase coenzyme F420-dependent AFERRID_11470 PF02325 YGGT family AFERRID_11480 PF02594 Uncharacterised ACR, YggU family COG1872 AFERRID_11490 PF06968 Biotin and Thiamin Synthesis associated domain AFERRID_11490 PF04055 Radical SAM superfamily AFERRID_11510 PF00529 HlyD membrane-fusion protein of T1SS AFERRID_11510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFERRID_11520 PF00696 Amino acid kinase family AFERRID_11530 PF00440 Bacterial regulatory proteins, tetR family AFERRID_11580 PF00175 Oxidoreductase NAD-binding domain AFERRID_11580 PF00970 Oxidoreductase FAD-binding domain AFERRID_11580 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_11590 PF00929 Exonuclease AFERRID_11600 PF03649 Uncharacterised protein family (UPF0014) AFERRID_11610 PF04376 Arginine-tRNA-protein transferase, N terminus AFERRID_11610 PF04377 Arginine-tRNA-protein transferase, C terminus AFERRID_11620 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AFERRID_11630 PF01435 Peptidase family M48 AFERRID_11650 PF08241 Methyltransferase domain AFERRID_11660 PF00561 alpha/beta hydrolase fold AFERRID_11670 PF00156 Phosphoribosyl transferase domain AFERRID_11680 PF00588 SpoU rRNA Methylase family AFERRID_11690 PF03781 Sulfatase-modifying factor enzyme 1 AFERRID_11690 PF12867 DinB superfamily AFERRID_11700 PF00155 Aminotransferase class I and II AFERRID_11710 PF03279 Bacterial lipid A biosynthesis acyltransferase AFERRID_11720 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AFERRID_11740 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFERRID_11750 PF00535 Glycosyl transferase family 2 AFERRID_11780 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AFERRID_11800 PF00534 Glycosyl transferases group 1 AFERRID_11800 PF13439 Glycosyltransferase Family 4 AFERRID_11810 PF01522 Polysaccharide deacetylase AFERRID_11810 PF00457 Glycosyl hydrolases family 11 AFERRID_11820 PF00535 Glycosyl transferase family 2 AFERRID_11830 PF00293 NUDIX domain AFERRID_11840 PF01960 ArgJ family AFERRID_11850 PF02810 SEC-C motif AFERRID_11850 PF01043 SecA preprotein cross-linking domain AFERRID_11850 PF07516 SecA Wing and Scaffold domain AFERRID_11850 PF07517 SecA DEAD-like domain AFERRID_11870 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AFERRID_11880 PF00043 Glutathione S-transferase, C-terminal domain AFERRID_11880 PF02798 Glutathione S-transferase, N-terminal domain AFERRID_11890 PF00501 AMP-binding enzyme AFERRID_11900 PF01966 HD domain AFERRID_11900 PF12627 Probable RNA and SrmB- binding site of polymerase A AFERRID_11900 PF01743 Poly A polymerase head domain AFERRID_11920 PF02381 MraZ protein, putative antitoxin-like AFERRID_11930 PF01795 MraW methylase family AFERRID_11950 PF03717 Penicillin-binding Protein dimerisation domain AFERRID_11950 PF00905 Penicillin binding protein transpeptidase domain AFERRID_11960 PF08245 Mur ligase middle domain AFERRID_11960 PF01225 Mur ligase family, catalytic domain AFERRID_11960 PF02875 Mur ligase family, glutamate ligase domain AFERRID_11970 PF02875 Mur ligase family, glutamate ligase domain AFERRID_11970 PF01225 Mur ligase family, catalytic domain AFERRID_11970 PF08245 Mur ligase middle domain AFERRID_11980 PF00953 Glycosyl transferase family 4 AFERRID_11980 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFERRID_11990 PF02875 Mur ligase family, glutamate ligase domain AFERRID_11990 PF08245 Mur ligase middle domain AFERRID_12000 PF01098 Cell cycle protein AFERRID_12010 PF03033 Glycosyltransferase family 28 N-terminal domain AFERRID_12010 PF04101 Glycosyltransferase family 28 C-terminal domain AFERRID_12020 PF01225 Mur ligase family, catalytic domain AFERRID_12020 PF02875 Mur ligase family, glutamate ligase domain AFERRID_12020 PF08245 Mur ligase middle domain AFERRID_12030 PF01565 FAD binding domain AFERRID_12030 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFERRID_12040 PF01820 D-ala D-ala ligase N-terminus AFERRID_12040 PF07478 D-ala D-ala ligase C-terminus AFERRID_12050 PF03799 Cell division protein FtsQ AFERRID_12050 PF08478 POTRA domain, FtsQ-type AFERRID_12070 PF02491 SHS2 domain inserted in FTSA AFERRID_12080 PF12327 FtsZ family, C-terminal domain AFERRID_12080 PF00091 Tubulin/FtsZ family, GTPase domain AFERRID_12110 PF01220 Dehydroquinase class II AFERRID_12120 PF00364 Biotin-requiring enzyme AFERRID_12130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFERRID_12130 PF00289 Biotin carboxylase, N-terminal domain AFERRID_12130 PF02785 Biotin carboxylase C-terminal domain AFERRID_12160 PF02954 Bacterial regulatory protein, Fis family AFERRID_12170 PF01464 Transglycosylase SLT domain AFERRID_12170 PF10145 Phage-related minor tail protein AFERRID_12170 PF01551 Peptidase family M23 AFERRID_12190 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AFERRID_12210 PF07072 Cell division protein AFERRID_12220 PF01121 Dephospho-CoA kinase AFERRID_12230 PF06750 Bacterial Peptidase A24 N-terminal domain AFERRID_12230 PF01478 Type IV leader peptidase family AFERRID_12260 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_12260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_12270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFERRID_12270 PF00437 Type II/IV secretion system protein AFERRID_12280 PF08501 Shikimate dehydrogenase substrate binding domain AFERRID_12280 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFERRID_12290 PF03702 Anhydro-N-acetylmuramic acid kinase AFERRID_12300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFERRID_12310 PF00762 Ferrochelatase AFERRID_12320 PF03372 Endonuclease/Exonuclease/phosphatase family AFERRID_12330 PF13417 Glutathione S-transferase, N-terminal domain AFERRID_12330 PF00043 Glutathione S-transferase, C-terminal domain AFERRID_12340 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AFERRID_12360 PF03372 Endonuclease/Exonuclease/phosphatase family AFERRID_12370 PF05175 Methyltransferase small domain AFERRID_12380 PF03466 LysR substrate binding domain AFERRID_12380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_12390 PF07690 Major Facilitator Superfamily AFERRID_12400 PF05746 DALR anticodon binding domain AFERRID_12400 PF03485 Arginyl tRNA synthetase N terminal domain AFERRID_12400 PF00750 tRNA synthetases class I (R) AFERRID_12430 PF00398 Ribosomal RNA adenine dimethylase AFERRID_12450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AFERRID_12460 PF01479 S4 domain AFERRID_12470 PF00005 ABC transporter AFERRID_12500 PF02470 MlaD protein AFERRID_12510 PF02405 Permease MlaE AFERRID_12520 PF00005 ABC transporter AFERRID_12530 PF02675 S-adenosylmethionine decarboxylase AFERRID_12540 PF17284 Spermidine synthase tetramerisation domain AFERRID_12560 PF00230 Major intrinsic protein AFERRID_12580 PF04241 Protein of unknown function (DUF423) AFERRID_12630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFERRID_12640 PF04221 RelB antitoxin AFERRID_12660 PF09957 Bacterial antitoxin of type II TA system, VapB AFERRID_12670 PF01850 PIN domain AFERRID_12680 PF02384 N-6 DNA Methylase AFERRID_12680 PF12161 HsdM N-terminal domain AFERRID_12710 PF08463 EcoEI R protein C-terminal AFERRID_12710 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AFERRID_12710 PF00271 Helicase conserved C-terminal domain AFERRID_12710 PF04851 Type III restriction enzyme, res subunit AFERRID_12760 PF04055 Radical SAM superfamily AFERRID_12760 PF13186 Iron-sulfur cluster-binding domain AFERRID_12780 PF00589 Phage integrase family AFERRID_12790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFERRID_12800 PF04348 LppC putative lipoprotein AFERRID_12810 PF13580 SIS domain AFERRID_12820 PF02913 FAD linked oxidases, C-terminal domain AFERRID_12820 PF01565 FAD binding domain AFERRID_12840 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFERRID_12860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_12860 PF03466 LysR substrate binding domain AFERRID_12870 PF04055 Radical SAM superfamily AFERRID_12870 PF06969 HemN C-terminal domain AFERRID_12960 PF04055 Radical SAM superfamily AFERRID_12960 PF18693 TRAM domain AFERRID_12960 PF00919 Uncharacterized protein family UPF0004 AFERRID_12970 PF02152 Dihydroneopterin aldolase AFERRID_12980 PF02660 Glycerol-3-phosphate acyltransferase AFERRID_13000 PF00814 Glycoprotease family AFERRID_13010 PF04305 Protein of unknown function (DUF455) AFERRID_13060 PF00873 AcrB/AcrD/AcrF family AFERRID_13070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFERRID_13090 PF00486 Transcriptional regulatory protein, C terminal AFERRID_13090 PF00072 Response regulator receiver domain AFERRID_13100 PF00672 HAMP domain AFERRID_13100 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_13100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_13110 PF01566 Natural resistance-associated macrophage protein AFERRID_13140 PF00005 ABC transporter AFERRID_13250 PF08681 Protein of unknown function (DUF1778) AFERRID_13270 PF00403 Heavy-metal-associated domain AFERRID_13270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_13270 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_13280 PF00403 Heavy-metal-associated domain AFERRID_13290 PF02411 MerT mercuric transport protein AFERRID_13300 PF00376 MerR family regulatory protein AFERRID_13300 PF09278 MerR, DNA binding AFERRID_13330 PF00534 Glycosyl transferases group 1 AFERRID_13330 PF13439 Glycosyltransferase Family 4 AFERRID_13380 PF01943 Polysaccharide biosynthesis protein AFERRID_13380 PF14667 Polysaccharide biosynthesis C-terminal domain AFERRID_13440 PF02397 Bacterial sugar transferase AFERRID_13450 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AFERRID_13460 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFERRID_13480 PF01850 PIN domain AFERRID_13500 PF00691 OmpA family AFERRID_13520 PF04055 Radical SAM superfamily AFERRID_13530 PF06508 Queuosine biosynthesis protein QueC AFERRID_13540 PF07676 WD40-like Beta Propeller Repeat AFERRID_13540 PF04052 TolB amino-terminal domain AFERRID_13550 PF07676 WD40-like Beta Propeller Repeat AFERRID_13550 PF04052 TolB amino-terminal domain AFERRID_13570 PF02472 Biopolymer transport protein ExbD/TolR AFERRID_13580 PF01618 MotA/TolQ/ExbB proton channel family AFERRID_13590 PF03061 Thioesterase superfamily AFERRID_13600 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFERRID_13600 PF05491 RuvB C-terminal winged helix domain AFERRID_13600 PF17864 RuvB AAA lid domain AFERRID_13610 PF01330 RuvA N terminal domain AFERRID_13610 PF07499 RuvA, C-terminal domain AFERRID_13620 PF02075 Crossover junction endodeoxyribonuclease RuvC AFERRID_13630 PF01709 Transcriptional regulator AFERRID_13650 PF02445 Quinolinate synthetase A protein AFERRID_13660 PF00152 tRNA synthetases class II (D, K and N) AFERRID_13660 PF02938 GAD domain AFERRID_13660 PF01336 OB-fold nucleic acid binding domain AFERRID_13680 PF01914 MarC family integral membrane protein AFERRID_13820 PF07690 Major Facilitator Superfamily AFERRID_13840 PF00529 HlyD membrane-fusion protein of T1SS AFERRID_13840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFERRID_13850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_13850 PF03466 LysR substrate binding domain AFERRID_13860 PF12848 ABC transporter AFERRID_13860 PF00005 ABC transporter AFERRID_13870 PF00468 Ribosomal protein L34 AFERRID_13880 PF00825 Ribonuclease P AFERRID_13890 PF01809 Putative membrane protein insertion efficiency factor AFERRID_13900 PF02096 60Kd inner membrane protein AFERRID_13900 PF14849 YidC periplasmic domain AFERRID_13910 PF10396 GTP-binding protein TrmE N-terminus AFERRID_13910 PF01926 50S ribosome-binding GTPase AFERRID_13910 PF12631 MnmE helical domain AFERRID_13930 PF13360 PQQ-like domain AFERRID_13930 PF01011 PQQ enzyme repeat AFERRID_13930 PF13570 PQQ-like domain AFERRID_13940 PF00158 Sigma-54 interaction domain AFERRID_13940 PF00072 Response regulator receiver domain AFERRID_13940 PF02954 Bacterial regulatory protein, Fis family AFERRID_13950 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_13950 PF00989 PAS fold AFERRID_13960 PF00034 Cytochrome c AFERRID_13970 PF00106 short chain dehydrogenase AFERRID_13980 PF00355 Rieske [2Fe-2S] domain AFERRID_13980 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AFERRID_13990 PF00032 Cytochrome b(C-terminal)/b6/petD AFERRID_13990 PF00033 Cytochrome b/b6/petB AFERRID_14010 PF05140 ResB-like family AFERRID_14020 PF01578 Cytochrome C assembly protein AFERRID_14110 PF00175 Oxidoreductase NAD-binding domain AFERRID_14110 PF00258 Flavodoxin AFERRID_14110 PF00667 FAD binding domain AFERRID_14120 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFERRID_14120 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFERRID_14130 PF01507 Phosphoadenosine phosphosulfate reductase family AFERRID_14140 PF01507 Phosphoadenosine phosphosulfate reductase family AFERRID_14150 PF00009 Elongation factor Tu GTP binding domain AFERRID_14160 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFERRID_14200 PF02416 mttA/Hcf106 family AFERRID_14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_14260 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_14270 PF00072 Response regulator receiver domain AFERRID_14300 PF02082 Transcriptional regulator AFERRID_14310 PF07690 Major Facilitator Superfamily AFERRID_14320 PF01040 UbiA prenyltransferase family AFERRID_14340 PF00127 Copper binding proteins, plastocyanin/azurin family AFERRID_14380 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFERRID_14390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFERRID_14410 PF00034 Cytochrome c AFERRID_14440 PF00158 Sigma-54 interaction domain AFERRID_14440 PF02954 Bacterial regulatory protein, Fis family AFERRID_14440 PF00072 Response regulator receiver domain AFERRID_14450 PF00989 PAS fold AFERRID_14450 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_14450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_14450 PF00672 HAMP domain AFERRID_14470 PF01029 NusB family AFERRID_14470 PF01189 16S rRNA methyltransferase RsmB/F AFERRID_14480 PF00551 Formyl transferase AFERRID_14480 PF02911 Formyl transferase, C-terminal domain AFERRID_14490 PF01327 Polypeptide deformylase AFERRID_14510 PF17782 DprA winged helix domain AFERRID_14510 PF02481 DNA recombination-mediator protein A AFERRID_14520 PF04361 Protein of unknown function (DUF494) AFERRID_14530 PF13368 Topoisomerase C-terminal repeat AFERRID_14530 PF01751 Toprim domain AFERRID_14530 PF01131 DNA topoisomerase AFERRID_14540 PF01751 Toprim domain AFERRID_14540 PF01131 DNA topoisomerase AFERRID_14540 PF01396 Topoisomerase DNA binding C4 zinc finger AFERRID_14550 PF11953 Domain of unknown function (DUF3470) AFERRID_14550 PF00037 4Fe-4S binding domain AFERRID_14560 PF03775 Septum formation inhibitor MinC, C-terminal domain AFERRID_14560 PF05209 Septum formation inhibitor MinC, N-terminal domain AFERRID_14570 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFERRID_14580 PF03776 Septum formation topological specificity factor MinE AFERRID_14600 PF01471 Putative peptidoglycan binding domain AFERRID_14600 PF13401 AAA domain AFERRID_14610 PF00263 Bacterial type II and III secretion system protein AFERRID_14610 PF03958 Bacterial type II/III secretion system short domain AFERRID_14730 PF00482 Type II secretion system (T2SS), protein F AFERRID_14750 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_14760 PF03707 Bacterial signalling protein N terminal repeat AFERRID_14760 PF00990 Diguanylate cyclase, GGDEF domain AFERRID_14760 PF00563 EAL domain AFERRID_14770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_14770 PF18053 DNA gyrase B subunit insert domain AFERRID_14770 PF00986 DNA gyrase B subunit, carboxyl terminus AFERRID_14770 PF00204 DNA gyrase B AFERRID_14770 PF01751 Toprim domain AFERRID_14780 PF02463 RecF/RecN/SMC N terminal domain AFERRID_14790 PF00712 DNA polymerase III beta subunit, N-terminal domain AFERRID_14790 PF02767 DNA polymerase III beta subunit, central domain AFERRID_14790 PF02768 DNA polymerase III beta subunit, C-terminal domain AFERRID_14800 PF08299 Bacterial dnaA protein helix-turn-helix AFERRID_14800 PF00308 Bacterial dnaA protein AFERRID_14800 PF11638 DnaA N-terminal domain AFERRID_14810 PF00106 short chain dehydrogenase AFERRID_14820 PF08543 Phosphomethylpyrimidine kinase AFERRID_14830 PF02581 Thiamine monophosphate synthase AFERRID_14840 PF00202 Aminotransferase class-III AFERRID_14850 PF01230 HIT domain AFERRID_14870 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFERRID_14870 PF03900 Porphobilinogen deaminase, C-terminal domain AFERRID_14890 PF00490 Delta-aminolevulinic acid dehydratase AFERRID_14910 PF07690 Major Facilitator Superfamily AFERRID_14920 PF00483 Nucleotidyl transferase AFERRID_14930 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFERRID_14940 PF00483 Nucleotidyl transferase AFERRID_14940 PF01050 Mannose-6-phosphate isomerase AFERRID_14950 PF16363 GDP-mannose 4,6 dehydratase AFERRID_14960 PF16363 GDP-mannose 4,6 dehydratase AFERRID_14970 PF01924 Hydrogenase formation hypA family AFERRID_14980 PF01455 HupF/HypC family AFERRID_14990 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFERRID_15000 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AFERRID_15010 PF00374 Nickel-dependent hydrogenase AFERRID_15020 PF02754 Cysteine-rich domain AFERRID_15020 PF13183 4Fe-4S dicluster domain AFERRID_15020 PF02665 Nitrate reductase gamma subunit AFERRID_15040 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AFERRID_15040 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFERRID_15080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFERRID_15080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFERRID_15100 PF00206 Lyase AFERRID_15100 PF14698 Argininosuccinate lyase C-terminal AFERRID_15120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_15120 PF00672 HAMP domain AFERRID_15120 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_15130 PF00072 Response regulator receiver domain AFERRID_15130 PF00486 Transcriptional regulatory protein, C terminal AFERRID_15210 PF00589 Phage integrase family AFERRID_15270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFERRID_15280 PF00873 AcrB/AcrD/AcrF family AFERRID_15290 PF00873 AcrB/AcrD/AcrF family AFERRID_15310 PF01741 Large-conductance mechanosensitive channel, MscL AFERRID_15320 PF02646 RmuC family AFERRID_15330 PF02401 LytB protein AFERRID_15340 PF04452 RNA methyltransferase AFERRID_15360 PF00459 Inositol monophosphatase family AFERRID_15370 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFERRID_15380 PF00456 Transketolase, thiamine diphosphate binding domain AFERRID_15380 PF02780 Transketolase, C-terminal domain AFERRID_15380 PF02779 Transketolase, pyrimidine binding domain AFERRID_15390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFERRID_15390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFERRID_15400 PF00162 Phosphoglycerate kinase AFERRID_15410 PF02887 Pyruvate kinase, alpha/beta domain AFERRID_15410 PF00224 Pyruvate kinase, barrel domain AFERRID_15420 PF01116 Fructose-bisphosphate aldolase class-II AFERRID_15430 PF00834 Ribulose-phosphate 3 epimerase family AFERRID_15440 PF13419 Haloacid dehalogenase-like hydrolase AFERRID_15450 PF00425 chorismate binding enzyme AFERRID_15450 PF04715 Anthranilate synthase component I, N terminal region AFERRID_15460 PF00117 Glutamine amidotransferase class-I AFERRID_15470 PF00591 Glycosyl transferase family, a/b domain AFERRID_15470 PF02885 Glycosyl transferase family, helical bundle domain AFERRID_15480 PF00218 Indole-3-glycerol phosphate synthase AFERRID_15500 PF02082 Transcriptional regulator AFERRID_15510 PF03232 Ubiquinone biosynthesis protein COQ7 AFERRID_15540 PF00005 ABC transporter AFERRID_15550 PF01061 ABC-2 type transporter AFERRID_15560 PF01906 Putative heavy-metal-binding AFERRID_15600 PF02798 Glutathione S-transferase, N-terminal domain AFERRID_15620 PF01381 Helix-turn-helix AFERRID_15660 PF18766 SWI2/SNF2 ATPase AFERRID_15660 PF11867 Domain of unknown function (DUF3387) AFERRID_15660 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFERRID_15680 PF01420 Type I restriction modification DNA specificity domain AFERRID_15740 PF02384 N-6 DNA Methylase AFERRID_15820 PF05726 Pirin C-terminal cupin domain AFERRID_15820 PF02678 Pirin AFERRID_15830 PF03358 NADPH-dependent FMN reductase AFERRID_15890 PF00994 Probable molybdopterin binding domain AFERRID_15920 PF13932 GidA associated domain AFERRID_15920 PF01134 Glucose inhibited division protein A AFERRID_15930 PF02527 rRNA small subunit methyltransferase G AFERRID_15940 PF13614 AAA domain AFERRID_15950 PF17762 HTH domain found in ParB protein AFERRID_15950 PF02195 ParB-like nuclease domain AFERRID_15970 PF00119 ATP synthase A chain AFERRID_15980 PF00137 ATP synthase subunit C AFERRID_15990 PF00430 ATP synthase B/B' CF(0) AFERRID_16000 PF00213 ATP synthase delta (OSCP) subunit AFERRID_16010 PF00306 ATP synthase alpha/beta chain, C terminal domain AFERRID_16010 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFERRID_16010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFERRID_16020 PF00231 ATP synthase AFERRID_16030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFERRID_16030 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFERRID_16040 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AFERRID_16040 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFERRID_16050 PF12804 MobA-like NTP transferase domain AFERRID_16050 PF14602 Hexapeptide repeat of succinyl-transferase AFERRID_16050 PF00132 Bacterial transferase hexapeptide (six repeats) AFERRID_16060 PF01380 SIS domain AFERRID_16070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFERRID_16070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFERRID_16080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_16080 PF00183 Hsp90 protein AFERRID_16090 PF02811 PHP domain AFERRID_16090 PF14791 DNA polymerase beta thumb AFERRID_16090 PF14716 Helix-hairpin-helix domain AFERRID_16100 PF00156 Phosphoribosyl transferase domain AFERRID_16100 PF05139 Erythromycin esterase AFERRID_16120 PF00226 DnaJ domain AFERRID_16120 PF01556 DnaJ C terminal domain AFERRID_16130 PF13361 UvrD-like helicase C-terminal domain AFERRID_16130 PF00580 UvrD/REP helicase N-terminal domain AFERRID_16170 PF01636 Phosphotransferase enzyme family AFERRID_16190 PF03641 Possible lysine decarboxylase AFERRID_16200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFERRID_16200 PF01367 5'-3' exonuclease, C-terminal SAM fold AFERRID_16200 PF01612 3'-5' exonuclease AFERRID_16200 PF00476 DNA polymerase family A AFERRID_16210 PF02254 TrkA-N domain AFERRID_16210 PF07885 Ion channel AFERRID_16220 PF01926 50S ribosome-binding GTPase AFERRID_16240 PF02261 Aspartate decarboxylase AFERRID_16250 PF00690 Cation transporter/ATPase, N-terminus AFERRID_16250 PF00689 Cation transporting ATPase, C-terminus AFERRID_16260 PF00579 tRNA synthetases class I (W and Y) AFERRID_16270 PF02576 RimP N-terminal domain AFERRID_16270 PF17384 RimP C-terminal SH3 domain AFERRID_16280 PF08529 NusA N-terminal domain AFERRID_16280 PF00575 S1 RNA binding domain AFERRID_16280 PF13184 NusA-like KH domain AFERRID_16290 PF00009 Elongation factor Tu GTP binding domain AFERRID_16290 PF11987 Translation-initiation factor 2 AFERRID_16290 PF04760 Translation initiation factor IF-2, N-terminal region AFERRID_16290 PF08364 Bacterial translation initiation factor IF-2 associated region AFERRID_16300 PF02033 Ribosome-binding factor A AFERRID_16310 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFERRID_16310 PF09157 Pseudouridine synthase II TruB, C-terminal AFERRID_16310 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFERRID_16320 PF00312 Ribosomal protein S15 AFERRID_16330 PF00013 KH domain AFERRID_16330 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFERRID_16330 PF01138 3' exoribonuclease family, domain 1 AFERRID_16330 PF03725 3' exoribonuclease family, domain 2 AFERRID_16330 PF00575 S1 RNA binding domain AFERRID_16340 PF05193 Peptidase M16 inactive domain AFERRID_16340 PF00675 Insulinase (Peptidase family M16) AFERRID_16350 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFERRID_16350 PF00753 Metallo-beta-lactamase superfamily AFERRID_16360 PF01209 ubiE/COQ5 methyltransferase family AFERRID_16370 PF00075 RNase H AFERRID_16380 PF00929 Exonuclease AFERRID_16400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFERRID_16410 PF00764 Arginosuccinate synthase AFERRID_16420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFERRID_16420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFERRID_16430 PF00202 Aminotransferase class-III AFERRID_16440 PF01842 ACT domain AFERRID_16440 PF00696 Amino acid kinase family AFERRID_16440 PF13840 ACT domain AFERRID_16500 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFERRID_16520 PF01464 Transglycosylase SLT domain AFERRID_16520 PF01476 LysM domain AFERRID_16530 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFERRID_16590 PF00330 Aconitase family (aconitate hydratase) AFERRID_16600 PF00180 Isocitrate/isopropylmalate dehydrogenase AFERRID_16610 PF00549 CoA-ligase AFERRID_16610 PF08442 ATP-grasp domain AFERRID_16630 PF02629 CoA binding domain AFERRID_16630 PF00549 CoA-ligase AFERRID_16640 PF00795 Carbon-nitrogen hydrolase AFERRID_16640 PF02540 NAD synthase AFERRID_16650 PF00543 Nitrogen regulatory protein P-II AFERRID_16660 PF13525 Outer membrane lipoprotein AFERRID_16670 PF01479 S4 domain AFERRID_16670 PF00849 RNA pseudouridylate synthase AFERRID_16690 PF03079 ARD/ARD' family AFERRID_16700 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFERRID_16700 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFERRID_16720 PF00596 Class II Aldolase and Adducin N-terminal domain AFERRID_16740 PF01327 Polypeptide deformylase AFERRID_16760 PF13520 Amino acid permease AFERRID_16770 PF16363 GDP-mannose 4,6 dehydratase AFERRID_16780 PF04321 RmlD substrate binding domain AFERRID_16810 PF00483 Nucleotidyl transferase AFERRID_16830 PF00158 Sigma-54 interaction domain AFERRID_16830 PF00072 Response regulator receiver domain AFERRID_16850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_16850 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_16860 PF02463 RecF/RecN/SMC N terminal domain AFERRID_16870 PF01513 ATP-NAD kinase AFERRID_16880 PF03309 Type III pantothenate kinase AFERRID_16890 PF08279 HTH domain AFERRID_16890 PF03099 Biotin/lipoate A/B protein ligase family AFERRID_16890 PF02237 Biotin protein ligase C terminal domain AFERRID_16900 PF00171 Aldehyde dehydrogenase family AFERRID_16920 PF06144 DNA polymerase III, delta subunit AFERRID_16920 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AFERRID_16940 PF00133 tRNA synthetases class I (I, L, M and V) AFERRID_16940 PF13603 Leucyl-tRNA synthetase, Domain 2 AFERRID_16940 PF08264 Anticodon-binding domain of tRNA AFERRID_16950 PF03358 NADPH-dependent FMN reductase AFERRID_16960 PF04264 YceI-like domain AFERRID_16970 PF01427 D-ala-D-ala dipeptidase AFERRID_16980 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFERRID_16980 PF06827 Zinc finger found in FPG and IleRS AFERRID_16980 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFERRID_17000 PF01545 Cation efflux family AFERRID_17000 PF16916 Dimerisation domain of Zinc Transporter AFERRID_17010 PF03951 Glutamine synthetase, beta-Grasp domain AFERRID_17010 PF00120 Glutamine synthetase, catalytic domain AFERRID_17030 PF01975 Survival protein SurE AFERRID_17060 PF04542 Sigma-70 region 2 AFERRID_17060 PF04539 Sigma-70 region 3 AFERRID_17060 PF00140 Sigma-70 factor, region 1.2 AFERRID_17060 PF04545 Sigma-70, region 4 AFERRID_17070 PF04430 Protein of unknown function (DUF498/DUF598) AFERRID_17080 PF00155 Aminotransferase class I and II AFERRID_17090 PF03447 Homoserine dehydrogenase, NAD binding domain AFERRID_17090 PF01842 ACT domain AFERRID_17090 PF00742 Homoserine dehydrogenase AFERRID_17100 PF00291 Pyridoxal-phosphate dependent enzyme AFERRID_17120 PF02272 DHHA1 domain AFERRID_17120 PF01368 DHH family AFERRID_17120 PF17768 RecJ OB domain AFERRID_17130 PF00472 RF-1 domain AFERRID_17130 PF03462 PCRF domain AFERRID_17140 PF01336 OB-fold nucleic acid binding domain AFERRID_17140 PF00152 tRNA synthetases class II (D, K and N) AFERRID_17150 PF02687 FtsX-like permease family AFERRID_17150 PF12704 MacB-like periplasmic core domain AFERRID_17160 PF00005 ABC transporter AFERRID_17180 PF00753 Metallo-beta-lactamase superfamily AFERRID_17180 PF03772 Competence protein AFERRID_17190 PF01618 MotA/TolQ/ExbB proton channel family AFERRID_17200 PF02472 Biopolymer transport protein ExbD/TolR AFERRID_17230 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AFERRID_17240 PF03966 Trm112p-like protein AFERRID_17250 PF02348 Cytidylyltransferase AFERRID_17260 PF00719 Inorganic pyrophosphatase AFERRID_17280 PF00589 Phage integrase family AFERRID_17280 PF13495 Phage integrase, N-terminal SAM-like domain AFERRID_17290 PF07517 SecA DEAD-like domain AFERRID_17290 PF07516 SecA Wing and Scaffold domain AFERRID_17290 PF01043 SecA preprotein cross-linking domain AFERRID_17290 PF02810 SEC-C motif AFERRID_17330 PF14552 Tautomerase enzyme AFERRID_17350 PF13007 Transposase C of IS166 homeodomain AFERRID_17350 PF13005 zinc-finger binding domain of transposase IS66 AFERRID_17350 PF03050 Transposase IS66 family AFERRID_17350 PF13817 IS66 C-terminal element AFERRID_17460 PF03150 Di-haem cytochrome c peroxidase AFERRID_17460 PF00034 Cytochrome c AFERRID_17470 PF03167 Uracil DNA glycosylase superfamily AFERRID_17480 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AFERRID_17490 PF00004 ATPase family associated with various cellular activities (AAA) AFERRID_17490 PF02861 Clp amino terminal domain, pathogenicity island component AFERRID_17490 PF07724 AAA domain (Cdc48 subfamily) AFERRID_17490 PF17871 AAA lid domain AFERRID_17490 PF10431 C-terminal, D2-small domain, of ClpB protein AFERRID_17500 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFERRID_17520 PF01965 DJ-1/PfpI family AFERRID_17530 PF03572 Peptidase family S41 AFERRID_17530 PF13180 PDZ domain AFERRID_17550 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AFERRID_17550 PF01676 Metalloenzyme superfamily AFERRID_17560 PF00343 Carbohydrate phosphorylase AFERRID_17580 PF00581 Rhodanese-like domain AFERRID_17590 PF00294 pfkB family carbohydrate kinase AFERRID_17610 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFERRID_17610 PF02772 S-adenosylmethionine synthetase, central domain AFERRID_17610 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFERRID_17620 PF05221 S-adenosyl-L-homocysteine hydrolase AFERRID_17620 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFERRID_17630 PF02219 Methylenetetrahydrofolate reductase AFERRID_17640 PF00485 Phosphoribulokinase / Uridine kinase family AFERRID_17670 PF01747 ATP-sulfurylase AFERRID_17670 PF14306 PUA-like domain AFERRID_17680 PF00156 Phosphoribosyl transferase domain AFERRID_17690 PF00118 TCP-1/cpn60 chaperonin family AFERRID_17700 PF00166 Chaperonin 10 Kd subunit AFERRID_17720 PF11412 Disulphide bond corrector protein DsbC AFERRID_17720 PF02683 Cytochrome C biogenesis protein transmembrane region AFERRID_17730 PF11412 Disulphide bond corrector protein DsbC AFERRID_17730 PF02683 Cytochrome C biogenesis protein transmembrane region AFERRID_17750 PF01063 Amino-transferase class IV AFERRID_17760 PF03710 Glutamate-ammonia ligase adenylyltransferase AFERRID_17760 PF08335 GlnD PII-uridylyltransferase AFERRID_17780 PF00795 Carbon-nitrogen hydrolase AFERRID_17790 PF00005 ABC transporter AFERRID_17790 PF06472 ABC transporter transmembrane region 2 AFERRID_17820 PF01252 Signal peptidase (SPase) II AFERRID_17830 PF06827 Zinc finger found in FPG and IleRS AFERRID_17830 PF08264 Anticodon-binding domain of tRNA AFERRID_17830 PF00133 tRNA synthetases class I (I, L, M and V) AFERRID_17840 PF01687 Riboflavin kinase AFERRID_17840 PF06574 FAD synthetase AFERRID_17850 PF03023 Lipid II flippase MurJ AFERRID_17870 PF08340 Domain of unknown function (DUF1732) AFERRID_17870 PF03755 YicC-like family, N-terminal region AFERRID_17880 PF00625 Guanylate kinase AFERRID_17890 PF01192 RNA polymerase Rpb6 AFERRID_17900 PF04607 Region found in RelA / SpoT proteins AFERRID_17900 PF13291 ACT domain AFERRID_17900 PF02824 TGS domain AFERRID_17910 PF01042 Endoribonuclease L-PSP AFERRID_17930 PF17191 RecG wedge domain AFERRID_17930 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AFERRID_17930 PF00270 DEAD/DEAH box helicase AFERRID_17960 PF01594 AI-2E family transporter AFERRID_17980 PF01875 Memo-like protein AFERRID_17990 PF01871 AMMECR1 AFERRID_18000 PF04055 Radical SAM superfamily AFERRID_18010 PF02321 Outer membrane efflux protein AFERRID_18020 PF00425 chorismate binding enzyme AFERRID_18020 PF04715 Anthranilate synthase component I, N terminal region AFERRID_18050 PF09588 YqaJ-like viral recombinase domain AFERRID_18110 PF00665 Integrase core domain AFERRID_18110 PF13276 HTH-like domain AFERRID_18120 PF03050 Transposase IS66 family AFERRID_18120 PF13817 IS66 C-terminal element AFERRID_18120 PF13005 zinc-finger binding domain of transposase IS66 AFERRID_18120 PF13007 Transposase C of IS166 homeodomain AFERRID_18150 PF13276 HTH-like domain AFERRID_18150 PF00665 Integrase core domain AFERRID_18160 PF01527 Transposase AFERRID_18170 PF00589 Phage integrase family AFERRID_18210 PF00270 DEAD/DEAH box helicase AFERRID_18210 PF03880 DbpA RNA binding domain AFERRID_18210 PF00271 Helicase conserved C-terminal domain AFERRID_18220 PF00313 'Cold-shock' DNA-binding domain AFERRID_18230 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AFERRID_18230 PF00270 DEAD/DEAH box helicase AFERRID_18230 PF17764 3′ DNA-binding domain (3′BD) AFERRID_18230 PF00271 Helicase conserved C-terminal domain AFERRID_18230 PF18074 Primosomal protein N C-terminal domain AFERRID_18260 PF00398 Ribosomal RNA adenine dimethylase AFERRID_18280 PF01938 TRAM domain AFERRID_18280 PF00919 Uncharacterized protein family UPF0004 AFERRID_18280 PF04055 Radical SAM superfamily AFERRID_18290 PF02562 PhoH-like protein AFERRID_18300 PF02130 Uncharacterized protein family UPF0054 AFERRID_18310 PF03471 Transporter associated domain AFERRID_18310 PF00571 CBS domain AFERRID_18320 PF00795 Carbon-nitrogen hydrolase AFERRID_18330 PF01523 Putative modulator of DNA gyrase AFERRID_18350 PF00005 ABC transporter AFERRID_18370 PF00950 ABC 3 transport family AFERRID_18400 PF01370 NAD dependent epimerase/dehydratase family AFERRID_18470 PF13439 Glycosyltransferase Family 4 AFERRID_18470 PF00534 Glycosyl transferases group 1 AFERRID_18480 PF13439 Glycosyltransferase Family 4 AFERRID_18480 PF00534 Glycosyl transferases group 1 AFERRID_18490 PF00664 ABC transporter transmembrane region AFERRID_18490 PF00005 ABC transporter AFERRID_18500 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFERRID_18500 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFERRID_18500 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFERRID_18510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFERRID_18510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFERRID_18510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFERRID_18530 PF13456 Reverse transcriptase-like AFERRID_18530 PF00300 Histidine phosphatase superfamily (branch 1) AFERRID_18560 PF08241 Methyltransferase domain AFERRID_18570 PF00330 Aconitase family (aconitate hydratase) AFERRID_18580 PF00694 Aconitase C-terminal domain AFERRID_18600 PF01243 Pyridoxamine 5'-phosphate oxidase AFERRID_18600 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AFERRID_18610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AFERRID_18640 PF01654 Cytochrome bd terminal oxidase subunit I AFERRID_18710 PF06481 COX Aromatic Rich Motif AFERRID_18710 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFERRID_18720 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFERRID_18730 PF00510 Cytochrome c oxidase subunit III AFERRID_18750 PF01040 UbiA prenyltransferase family AFERRID_18760 PF07690 Major Facilitator Superfamily AFERRID_18770 PF02673 Bacitracin resistance protein BacA AFERRID_18780 PF01272 Transcription elongation factor, GreA/GreB, C-term AFERRID_18780 PF03449 Transcription elongation factor, N-terminal AFERRID_18790 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFERRID_18790 PF02142 MGS-like domain AFERRID_18790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFERRID_18800 PF00117 Glutamine amidotransferase class-I AFERRID_18800 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFERRID_18820 PF02597 ThiS family AFERRID_18820 PF05690 Thiazole biosynthesis protein ThiG AFERRID_18830 PF05690 Thiazole biosynthesis protein ThiG AFERRID_18850 PF02875 Mur ligase family, glutamate ligase domain AFERRID_18850 PF01225 Mur ligase family, catalytic domain AFERRID_18850 PF08245 Mur ligase middle domain AFERRID_18860 PF02441 Flavoprotein AFERRID_18870 PF00005 ABC transporter AFERRID_18880 PF02405 Permease MlaE AFERRID_18920 PF00899 ThiF family AFERRID_18950 PF00005 ABC transporter AFERRID_18960 PF00085 Thioredoxin AFERRID_18970 PF07498 Rho termination factor, N-terminal domain AFERRID_18970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFERRID_18970 PF07497 Rho termination factor, RNA-binding domain AFERRID_18980 PF01197 Ribosomal protein L31 AFERRID_18990 PF00390 Malic enzyme, N-terminal domain AFERRID_18990 PF03949 Malic enzyme, NAD binding domain AFERRID_19000 PF01594 AI-2E family transporter AFERRID_19010 PF00920 Dehydratase family AFERRID_19040 PF00583 Acetyltransferase (GNAT) family AFERRID_19040 PF00696 Amino acid kinase family AFERRID_19050 PF01722 BolA-like protein AFERRID_19060 PF03795 YCII-related domain AFERRID_19070 PF04279 Intracellular septation protein A AFERRID_19090 PF00459 Inositol monophosphatase family AFERRID_19100 PF00588 SpoU rRNA Methylase family AFERRID_19110 PF00132 Bacterial transferase hexapeptide (six repeats) AFERRID_19120 PF02082 Transcriptional regulator AFERRID_19130 PF00266 Aminotransferase class-V AFERRID_19140 PF01592 NifU-like N terminal domain AFERRID_19150 PF01521 Iron-sulphur cluster biosynthesis AFERRID_19160 PF07743 HSCB C-terminal oligomerisation domain AFERRID_19170 PF00012 Hsp70 protein AFERRID_19180 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_19190 PF04384 Iron-sulphur cluster assembly AFERRID_19210 PF01734 Patatin-like phospholipase AFERRID_19260 PF02634 FdhD/NarQ family AFERRID_19280 PF00384 Molybdopterin oxidoreductase AFERRID_19280 PF01568 Molydopterin dinucleotide binding domain AFERRID_19290 PF02954 Bacterial regulatory protein, Fis family AFERRID_19290 PF00158 Sigma-54 interaction domain AFERRID_19290 PF01590 GAF domain AFERRID_19300 PF04828 Glutathione-dependent formaldehyde-activating enzyme AFERRID_19310 PF00107 Zinc-binding dehydrogenase AFERRID_19310 PF08240 Alcohol dehydrogenase GroES-like domain AFERRID_19320 PF00756 Putative esterase AFERRID_19330 PF03466 LysR substrate binding domain AFERRID_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_19340 PF02954 Bacterial regulatory protein, Fis family AFERRID_19340 PF00158 Sigma-54 interaction domain AFERRID_19340 PF00072 Response regulator receiver domain AFERRID_19350 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AFERRID_19350 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFERRID_19360 PF00374 Nickel-dependent hydrogenase AFERRID_19440 PF01106 NifU-like domain AFERRID_19460 PF01300 Telomere recombination AFERRID_19460 PF17788 HypF Kae1-like domain AFERRID_19460 PF07503 HypF finger AFERRID_19460 PF00708 Acylphosphatase AFERRID_19470 PF01455 HupF/HypC family AFERRID_19480 PF13580 SIS domain AFERRID_19490 PF01924 Hydrogenase formation hypA family AFERRID_19500 PF02769 AIR synthase related protein, C-terminal domain AFERRID_19500 PF00586 AIR synthase related protein, N-terminal domain AFERRID_19520 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFERRID_19540 PF01266 FAD dependent oxidoreductase AFERRID_19570 PF00291 Pyridoxal-phosphate dependent enzyme AFERRID_19570 PF00585 C-terminal regulatory domain of Threonine dehydratase AFERRID_19620 PF01553 Acyltransferase AFERRID_19630 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFERRID_19640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFERRID_19640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_19650 PF01493 GXGXG motif AFERRID_19650 PF01645 Conserved region in glutamate synthase AFERRID_19650 PF00310 Glutamine amidotransferases class-II AFERRID_19650 PF04898 Glutamate synthase central domain AFERRID_19660 PF04898 Glutamate synthase central domain AFERRID_19660 PF00310 Glutamine amidotransferases class-II AFERRID_19660 PF01645 Conserved region in glutamate synthase AFERRID_19660 PF01493 GXGXG motif AFERRID_19670 PF01966 HD domain AFERRID_19670 PF13286 Phosphohydrolase-associated domain AFERRID_19680 PF01761 3-dehydroquinate synthase AFERRID_19690 PF01202 Shikimate kinase AFERRID_19700 PF00263 Bacterial type II and III secretion system protein AFERRID_19700 PF11741 AMIN domain AFERRID_19700 PF03958 Bacterial type II/III secretion system short domain AFERRID_19700 PF07660 Secretin and TonB N terminus short domain AFERRID_19750 PF14437 MafB19-like deaminase AFERRID_19760 PF01894 Uncharacterised protein family UPF0047 AFERRID_19780 PF01713 Smr domain AFERRID_19780 PF00488 MutS domain V AFERRID_19790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFERRID_19790 PF00205 Thiamine pyrophosphate enzyme, central domain AFERRID_19790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFERRID_19800 PF10369 Small subunit of acetolactate synthase AFERRID_19810 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFERRID_19810 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFERRID_19820 PF02666 Phosphatidylserine decarboxylase AFERRID_19830 PF01066 CDP-alcohol phosphatidyltransferase AFERRID_19840 PF00224 Pyruvate kinase, barrel domain AFERRID_19840 PF02887 Pyruvate kinase, alpha/beta domain AFERRID_19850 PF00582 Universal stress protein family AFERRID_19860 PF14489 QueF-like protein AFERRID_19870 PF06470 SMC proteins Flexible Hinge Domain AFERRID_19870 PF02463 RecF/RecN/SMC N terminal domain AFERRID_19900 PF00533 BRCA1 C Terminus (BRCT) domain AFERRID_19900 PF01653 NAD-dependent DNA ligase adenylation domain AFERRID_19900 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFERRID_19900 PF03120 NAD-dependent DNA ligase OB-fold domain AFERRID_19900 PF12826 Helix-hairpin-helix motif AFERRID_19910 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFERRID_19910 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AFERRID_19920 PF08241 Methyltransferase domain AFERRID_19950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_19950 PF03466 LysR substrate binding domain AFERRID_19980 PF01925 Sulfite exporter TauE/SafE AFERRID_19990 PF01618 MotA/TolQ/ExbB proton channel family AFERRID_20000 PF02472 Biopolymer transport protein ExbD/TolR AFERRID_20040 PF01979 Amidohydrolase family AFERRID_20050 PF00962 Adenosine/AMP deaminase AFERRID_20070 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_20070 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFERRID_20070 PF01799 [2Fe-2S] binding domain AFERRID_20070 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFERRID_20080 PF01799 [2Fe-2S] binding domain AFERRID_20080 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_20090 PF00941 FAD binding domain in molybdopterin dehydrogenase AFERRID_20090 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFERRID_20110 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) AFERRID_20120 PF13478 XdhC Rossmann domain AFERRID_20120 PF02625 XdhC and CoxI family AFERRID_20140 PF01425 Amidase AFERRID_20160 PF12804 MobA-like NTP transferase domain AFERRID_20250 PF01522 Polysaccharide deacetylase AFERRID_20260 PF04820 Tryptophan halogenase AFERRID_20300 PF00999 Sodium/hydrogen exchanger family AFERRID_20330 PF02801 Beta-ketoacyl synthase, C-terminal domain AFERRID_20330 PF00109 Beta-ketoacyl synthase, N-terminal domain AFERRID_20460 PF07690 Major Facilitator Superfamily AFERRID_20470 PF00654 Voltage gated chloride channel AFERRID_20480 PF00654 Voltage gated chloride channel AFERRID_20490 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFERRID_20490 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFERRID_20500 PF00403 Heavy-metal-associated domain AFERRID_20500 PF00403 Heavy-metal-associated domain AFERRID_20540 PF00034 Cytochrome c AFERRID_20580 PF00689 Cation transporting ATPase, C-terminus AFERRID_20580 PF00690 Cation transporter/ATPase, N-terminus AFERRID_20600 PF00140 Sigma-70 factor, region 1.2 AFERRID_20600 PF04539 Sigma-70 region 3 AFERRID_20600 PF04542 Sigma-70 region 2 AFERRID_20600 PF04545 Sigma-70, region 4 AFERRID_20620 PF03466 LysR substrate binding domain AFERRID_20620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_20630 PF00689 Cation transporting ATPase, C-terminus AFERRID_20630 PF00690 Cation transporter/ATPase, N-terminus AFERRID_20720 PF07690 Major Facilitator Superfamily AFERRID_20740 PF00581 Rhodanese-like domain AFERRID_20740 PF00753 Metallo-beta-lactamase superfamily AFERRID_20770 PF01925 Sulfite exporter TauE/SafE AFERRID_20780 PF01329 Pterin 4 alpha carbinolamine dehydratase AFERRID_20790 PF04851 Type III restriction enzyme, res subunit AFERRID_20790 PF02151 UvrB/uvrC motif AFERRID_20790 PF12344 Ultra-violet resistance protein B AFERRID_20790 PF17757 UvrB interaction domain AFERRID_20790 PF00271 Helicase conserved C-terminal domain AFERRID_20800 PF00271 Helicase conserved C-terminal domain AFERRID_20800 PF04851 Type III restriction enzyme, res subunit AFERRID_20800 PF12344 Ultra-violet resistance protein B AFERRID_20800 PF02151 UvrB/uvrC motif AFERRID_20800 PF17757 UvrB interaction domain AFERRID_20810 PF00107 Zinc-binding dehydrogenase AFERRID_20810 PF08240 Alcohol dehydrogenase GroES-like domain AFERRID_20820 PF00117 Glutamine amidotransferase class-I AFERRID_20820 PF06418 CTP synthase N-terminus AFERRID_20830 PF00793 DAHP synthetase I family AFERRID_20840 PF03952 Enolase, N-terminal domain AFERRID_20840 PF00113 Enolase, C-terminal TIM barrel domain AFERRID_20850 PF04977 Septum formation initiator AFERRID_20860 PF01132 Elongation factor P (EF-P) OB domain AFERRID_20860 PF08207 Elongation factor P (EF-P) KOW-like domain AFERRID_20860 PF09285 Elongation factor P, C-terminal AFERRID_20880 PF08459 UvrC Helix-hairpin-helix N-terminal AFERRID_20880 PF02151 UvrB/uvrC motif AFERRID_20880 PF01541 GIY-YIG catalytic domain AFERRID_20890 PF01066 CDP-alcohol phosphatidyltransferase AFERRID_20920 PF10414 Sirohaem synthase dimerisation region AFERRID_20920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFERRID_20920 PF14824 Sirohaem biosynthesis protein central AFERRID_20930 PF02885 Glycosyl transferase family, helical bundle domain AFERRID_20940 PF00384 Molybdopterin oxidoreductase AFERRID_20940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFERRID_20940 PF01568 Molydopterin dinucleotide binding domain AFERRID_20950 PF00355 Rieske [2Fe-2S] domain AFERRID_20960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFERRID_20960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFERRID_20960 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_20960 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFERRID_20960 PF04324 BFD-like [2Fe-2S] binding domain AFERRID_20980 PF07690 Major Facilitator Superfamily AFERRID_20990 PF00005 ABC transporter AFERRID_21000 PF13545 Crp-like helix-turn-helix domain AFERRID_21000 PF00027 Cyclic nucleotide-binding domain AFERRID_21010 PF04343 Protein of unknown function, DUF488 AFERRID_21020 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_21020 PF14759 Reductase C-terminal AFERRID_21030 PF00970 Oxidoreductase FAD-binding domain AFERRID_21030 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_21030 PF00175 Oxidoreductase NAD-binding domain AFERRID_21040 PF00970 Oxidoreductase FAD-binding domain AFERRID_21040 PF00175 Oxidoreductase NAD-binding domain AFERRID_21040 PF00042 Globin AFERRID_21050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFERRID_21050 PF00529 HlyD membrane-fusion protein of T1SS AFERRID_21060 PF02321 Outer membrane efflux protein AFERRID_21070 PF07690 Major Facilitator Superfamily AFERRID_21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_21080 PF03466 LysR substrate binding domain AFERRID_21140 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFERRID_21140 PF05362 Lon protease (S16) C-terminal proteolytic domain AFERRID_21140 PF00004 ATPase family associated with various cellular activities (AAA) AFERRID_21150 PF10672 S-adenosylmethionine-dependent methyltransferase AFERRID_21150 PF17785 PUA-like domain AFERRID_21160 PF01008 Initiation factor 2 subunit family AFERRID_21170 PF00521 DNA gyrase/topoisomerase IV, subunit A AFERRID_21170 PF03989 DNA gyrase C-terminal domain, beta-propeller AFERRID_21180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFERRID_21180 PF01842 ACT domain AFERRID_21180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFERRID_21190 PF01817 Chorismate mutase type II AFERRID_21190 PF00800 Prephenate dehydratase AFERRID_21190 PF01842 ACT domain AFERRID_21200 PF00155 Aminotransferase class I and II AFERRID_21210 PF18152 DAHP synthase ferredoxin-like domain AFERRID_21210 PF00793 DAHP synthetase I family AFERRID_21220 PF01842 ACT domain AFERRID_21220 PF02153 Prephenate dehydrogenase AFERRID_21230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFERRID_21240 PF02224 Cytidylate kinase AFERRID_21250 PF00575 S1 RNA binding domain AFERRID_21260 PF00216 Bacterial DNA-binding protein AFERRID_21270 PF18073 Rubredoxin metal binding domain AFERRID_21280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFERRID_21290 PF00156 Phosphoribosyl transferase domain AFERRID_21300 PF05698 Bacterial trigger factor protein (TF) C-terminus AFERRID_21300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFERRID_21300 PF05697 Bacterial trigger factor protein (TF) AFERRID_21310 PF00574 Clp protease AFERRID_21320 PF06689 ClpX C4-type zinc finger AFERRID_21320 PF07724 AAA domain (Cdc48 subfamily) AFERRID_21320 PF10431 C-terminal, D2-small domain, of ClpB protein AFERRID_21330 PF05362 Lon protease (S16) C-terminal proteolytic domain AFERRID_21330 PF00004 ATPase family associated with various cellular activities (AAA) AFERRID_21330 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFERRID_21340 PF00216 Bacterial DNA-binding protein AFERRID_21350 PF13145 PPIC-type PPIASE domain AFERRID_21400 PF07690 Major Facilitator Superfamily AFERRID_21410 PF04356 Protein of unknown function (DUF489) AFERRID_21420 PF01909 Nucleotidyltransferase domain AFERRID_21420 PF08335 GlnD PII-uridylyltransferase AFERRID_21420 PF01842 ACT domain AFERRID_21420 PF01966 HD domain AFERRID_21430 PF00557 Metallopeptidase family M24 AFERRID_21440 PF17746 SfsA N-terminal OB domain AFERRID_21440 PF03749 Sugar fermentation stimulation protein RE domain AFERRID_21450 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFERRID_21460 PF02769 AIR synthase related protein, C-terminal domain AFERRID_21460 PF00586 AIR synthase related protein, N-terminal domain AFERRID_21470 PF04608 Phosphatidylglycerophosphatase A AFERRID_21480 PF00994 Probable molybdopterin binding domain AFERRID_21480 PF18146 Damage-inducible protein CinA KH domain AFERRID_21480 PF02464 Competence-damaged protein AFERRID_21490 PF00154 recA bacterial DNA recombination protein AFERRID_21500 PF02631 RecX family AFERRID_21510 PF01411 tRNA synthetases class II (A) AFERRID_21510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFERRID_21510 PF02272 DHHA1 domain AFERRID_21560 PF00970 Oxidoreductase FAD-binding domain AFERRID_21560 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_21560 PF00175 Oxidoreductase NAD-binding domain AFERRID_21580 PF01464 Transglycosylase SLT domain AFERRID_21580 PF10145 Phage-related minor tail protein AFERRID_21580 PF01551 Peptidase family M23 AFERRID_21590 PF00176 SNF2 family N-terminal domain AFERRID_21590 PF00271 Helicase conserved C-terminal domain AFERRID_21590 PF12419 SNF2 Helicase protein AFERRID_21610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFERRID_21610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFERRID_21610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFERRID_21610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFERRID_21630 PF12848 ABC transporter AFERRID_21630 PF00005 ABC transporter AFERRID_21640 PF12848 ABC transporter AFERRID_21640 PF00005 ABC transporter AFERRID_21650 PF13667 ThiC-associated domain AFERRID_21650 PF01964 Radical SAM ThiC family AFERRID_21670 PF05199 GMC oxidoreductase AFERRID_21670 PF00732 GMC oxidoreductase AFERRID_21680 PF00171 Aldehyde dehydrogenase family AFERRID_21710 PF02322 Cytochrome bd terminal oxidase subunit II AFERRID_21720 PF01654 Cytochrome bd terminal oxidase subunit I AFERRID_21740 PF00072 Response regulator receiver domain AFERRID_21740 PF02954 Bacterial regulatory protein, Fis family AFERRID_21740 PF00158 Sigma-54 interaction domain AFERRID_21750 PF02230 Phospholipase/Carboxylesterase AFERRID_21760 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_21760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_21770 PF04349 Periplasmic glucan biosynthesis protein, MdoG AFERRID_21790 PF00535 Glycosyl transferase family 2 AFERRID_21810 PF04241 Protein of unknown function (DUF423) AFERRID_21830 PF08496 Peptidase family S49 N-terminal AFERRID_21830 PF01343 Peptidase family S49 AFERRID_21840 PF02597 ThiS family AFERRID_21850 PF02391 MoaE protein AFERRID_21860 PF04461 Protein of unknown function (DUF520) AFERRID_21880 PF01571 Aminomethyltransferase folate-binding domain AFERRID_21880 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFERRID_21890 PF01597 Glycine cleavage H-protein AFERRID_21900 PF02347 Glycine cleavage system P-protein AFERRID_21910 PF02347 Glycine cleavage system P-protein AFERRID_21920 PF02347 Glycine cleavage system P-protein AFERRID_21930 PF00005 ABC transporter AFERRID_21930 PF00664 ABC transporter transmembrane region AFERRID_21940 PF00037 4Fe-4S binding domain AFERRID_21940 PF11953 Domain of unknown function (DUF3470) AFERRID_21950 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFERRID_21950 PF00578 AhpC/TSA family AFERRID_21970 PF02811 PHP domain AFERRID_21980 PF01594 AI-2E family transporter AFERRID_22010 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFERRID_22010 PF00588 SpoU rRNA Methylase family AFERRID_22020 PF01026 TatD related DNase AFERRID_22030 PF12706 Beta-lactamase superfamily domain AFERRID_22030 PF03099 Biotin/lipoate A/B protein ligase family AFERRID_22060 PF00793 DAHP synthetase I family AFERRID_22060 PF18152 DAHP synthase ferredoxin-like domain AFERRID_22080 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AFERRID_22110 PF04264 YceI-like domain AFERRID_22130 PF01047 MarR family AFERRID_22140 PF02371 Transposase IS116/IS110/IS902 family AFERRID_22140 PF01548 Transposase AFERRID_22160 PF00005 ABC transporter AFERRID_22160 PF00664 ABC transporter transmembrane region AFERRID_22180 PF01571 Aminomethyltransferase folate-binding domain AFERRID_22200 PF02910 Fumarate reductase flavoprotein C-term AFERRID_22200 PF00890 FAD binding domain AFERRID_22210 PF08281 Sigma-70, region 4 AFERRID_22210 PF04542 Sigma-70 region 2 AFERRID_22230 PF13180 PDZ domain AFERRID_22240 PF13180 PDZ domain AFERRID_22250 PF06421 GTP-binding protein LepA C-terminus AFERRID_22250 PF00679 Elongation factor G C-terminus AFERRID_22250 PF03144 Elongation factor Tu domain 2 AFERRID_22250 PF00009 Elongation factor Tu GTP binding domain AFERRID_22260 PF10502 Signal peptidase, peptidase S26 AFERRID_22280 PF14622 Ribonuclease-III-like AFERRID_22280 PF00035 Double-stranded RNA binding motif AFERRID_22290 PF07650 KH domain AFERRID_22290 PF01926 50S ribosome-binding GTPase AFERRID_22300 PF02565 Recombination protein O C terminal AFERRID_22300 PF11967 Recombination protein O N terminal AFERRID_22310 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AFERRID_22320 PF01648 4'-phosphopantetheinyl transferase superfamily AFERRID_22330 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFERRID_22330 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFERRID_22330 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFERRID_22340 PF00294 pfkB family carbohydrate kinase AFERRID_22340 PF01467 Cytidylyltransferase-like AFERRID_22350 PF01171 PP-loop family AFERRID_22360 PF01430 Hsp33 protein AFERRID_22390 PF08463 EcoEI R protein C-terminal AFERRID_22390 PF00271 Helicase conserved C-terminal domain AFERRID_22390 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFERRID_22390 PF04851 Type III restriction enzyme, res subunit AFERRID_22410 PF12161 HsdM N-terminal domain AFERRID_22410 PF02384 N-6 DNA Methylase AFERRID_22470 PF00534 Glycosyl transferases group 1 AFERRID_22470 PF13439 Glycosyltransferase Family 4 AFERRID_22480 PF00534 Glycosyl transferases group 1 AFERRID_22520 PF00034 Cytochrome c AFERRID_22550 PF01545 Cation efflux family AFERRID_22570 PF00271 Helicase conserved C-terminal domain AFERRID_22570 PF00270 DEAD/DEAH box helicase AFERRID_22580 PF00072 Response regulator receiver domain AFERRID_22580 PF00486 Transcriptional regulatory protein, C terminal AFERRID_22590 PF11808 Phosphate regulon sensor protein PhoR AFERRID_22590 PF00989 PAS fold AFERRID_22590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFERRID_22590 PF00512 His Kinase A (phospho-acceptor) domain AFERRID_22600 PF12849 PBP superfamily domain AFERRID_22610 PF00528 Binding-protein-dependent transport system inner membrane component AFERRID_22620 PF00528 Binding-protein-dependent transport system inner membrane component AFERRID_22630 PF00005 ABC transporter AFERRID_22640 PF01895 PhoU domain AFERRID_22650 PF02541 Ppx/GppA phosphatase family AFERRID_22670 PF00318 Ribosomal protein S2 AFERRID_22680 PF00889 Elongation factor TS AFERRID_22690 PF00696 Amino acid kinase family AFERRID_22700 PF01765 Ribosome recycling factor AFERRID_22710 PF01255 Putative undecaprenyl diphosphate synthase AFERRID_22730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFERRID_22730 PF13288 DXP reductoisomerase C-terminal domain AFERRID_22730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFERRID_22740 PF17820 PDZ domain AFERRID_22740 PF02163 Peptidase family M50 AFERRID_22750 PF01103 Surface antigen AFERRID_22750 PF07244 Surface antigen variable number repeat AFERRID_22770 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AFERRID_22770 PF00132 Bacterial transferase hexapeptide (six repeats) AFERRID_22780 PF07977 FabA-like domain AFERRID_22790 PF00132 Bacterial transferase hexapeptide (six repeats) AFERRID_22790 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AFERRID_22800 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFERRID_22800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFERRID_22810 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFERRID_22820 PF02684 Lipid-A-disaccharide synthetase AFERRID_22830 PF01351 Ribonuclease HII AFERRID_22840 PF14579 Helix-hairpin-helix motif AFERRID_22840 PF02811 PHP domain AFERRID_22840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFERRID_22840 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFERRID_22840 PF01336 OB-fold nucleic acid binding domain AFERRID_22850 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFERRID_22860 PF01171 PP-loop family AFERRID_22860 PF09179 TilS substrate binding domain AFERRID_22860 PF11734 TilS substrate C-terminal domain AFERRID_22870 PF01979 Amidohydrolase family AFERRID_22880 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFERRID_22890 PF13419 Haloacid dehalogenase-like hydrolase AFERRID_22910 PF00578 AhpC/TSA family AFERRID_22920 PF13638 PIN domain AFERRID_22920 PF02562 PhoH-like protein AFERRID_22930 PF17810 Arginine decarboxylase helical bundle domain AFERRID_22930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFERRID_22930 PF17944 Arginine decarboxylase C-terminal helical extension AFERRID_22950 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFERRID_23020 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_23030 PF00766 Electron transfer flavoprotein FAD-binding domain AFERRID_23030 PF01012 Electron transfer flavoprotein domain AFERRID_23040 PF01012 Electron transfer flavoprotein domain AFERRID_23080 PF01618 MotA/TolQ/ExbB proton channel family AFERRID_23090 PF02472 Biopolymer transport protein ExbD/TolR AFERRID_23110 PF00005 ABC transporter AFERRID_23130 PF01032 FecCD transport family AFERRID_23220 PF00581 Rhodanese-like domain AFERRID_23240 PF03206 Nitrogen fixation protein NifW AFERRID_23250 PF00132 Bacterial transferase hexapeptide (six repeats) AFERRID_23260 PF00682 HMGL-like AFERRID_23270 PF00266 Aminotransferase class-V AFERRID_23280 PF01592 NifU-like N terminal domain AFERRID_23280 PF01106 NifU-like domain AFERRID_23280 PF04324 BFD-like [2Fe-2S] binding domain AFERRID_23290 PF01521 Iron-sulphur cluster biosynthesis AFERRID_23310 PF04891 NifQ AFERRID_23320 PF12838 4Fe-4S dicluster domain AFERRID_23330 PF05082 Rop-like AFERRID_23340 PF03270 Protein of unknown function, DUF269 AFERRID_23350 PF02579 Dinitrogenase iron-molybdenum cofactor AFERRID_23360 PF00148 Nitrogenase component 1 type Oxidoreductase AFERRID_23370 PF04324 BFD-like [2Fe-2S] binding domain AFERRID_23370 PF00148 Nitrogenase component 1 type Oxidoreductase AFERRID_23390 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_23400 PF11844 Domain of unknown function (DUF3364) AFERRID_23400 PF00148 Nitrogenase component 1 type Oxidoreductase AFERRID_23410 PF00148 Nitrogenase component 1 type Oxidoreductase AFERRID_23420 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AFERRID_23440 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) AFERRID_23450 PF03747 ADP-ribosylglycohydrolase AFERRID_23460 PF01590 GAF domain AFERRID_23460 PF00158 Sigma-54 interaction domain AFERRID_23460 PF02954 Bacterial regulatory protein, Fis family AFERRID_23470 PF04055 Radical SAM superfamily AFERRID_23470 PF02579 Dinitrogenase iron-molybdenum cofactor AFERRID_23480 PF00037 4Fe-4S binding domain AFERRID_23490 PF01521 Iron-sulphur cluster biosynthesis AFERRID_23520 PF01816 Leucine rich repeat variant AFERRID_23520 PF05484 LRV protein FeS4 cluster AFERRID_23530 PF04319 NifZ domain AFERRID_23560 PF06988 NifT/FixU protein AFERRID_23580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFERRID_23590 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_23620 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFERRID_23620 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFERRID_23630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_23630 PF03459 TOBE domain AFERRID_23640 PF00171 Aldehyde dehydrogenase family AFERRID_23680 PF00294 pfkB family carbohydrate kinase AFERRID_23690 PF00862 Sucrose synthase AFERRID_23690 PF00534 Glycosyl transferases group 1 AFERRID_23700 PF00534 Glycosyl transferases group 1 AFERRID_23700 PF00862 Sucrose synthase AFERRID_23710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFERRID_23710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFERRID_23730 PF02899 Phage integrase, N-terminal SAM-like domain AFERRID_23730 PF00589 Phage integrase family AFERRID_23790 PF01695 IstB-like ATP binding protein AFERRID_23820 PF00436 Single-strand binding protein family AFERRID_23860 PF06508 Queuosine biosynthesis protein QueC AFERRID_23890 PF00665 Integrase core domain AFERRID_23890 PF13276 HTH-like domain AFERRID_23930 PF00271 Helicase conserved C-terminal domain AFERRID_23930 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AFERRID_23930 PF08463 EcoEI R protein C-terminal AFERRID_23930 PF04851 Type III restriction enzyme, res subunit AFERRID_23940 PF01420 Type I restriction modification DNA specificity domain AFERRID_23950 PF02384 N-6 DNA Methylase AFERRID_23950 PF12161 HsdM N-terminal domain AFERRID_23960 PF01850 PIN domain AFERRID_23970 PF09957 Bacterial antitoxin of type II TA system, VapB AFERRID_24000 PF00216 Bacterial DNA-binding protein AFERRID_24010 PF00216 Bacterial DNA-binding protein AFERRID_24050 PF04221 RelB antitoxin AFERRID_24070 PF00501 AMP-binding enzyme AFERRID_24070 PF13193 AMP-binding enzyme C-terminal domain AFERRID_24070 PF01553 Acyltransferase AFERRID_24200 PF05973 Phage derived protein Gp49-like (DUF891) AFERRID_24210 PF01381 Helix-turn-helix AFERRID_24240 PF00437 Type II/IV secretion system protein AFERRID_24270 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AFERRID_24340 PF13180 PDZ domain AFERRID_24360 PF00011 Hsp20/alpha crystallin family AFERRID_24390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFERRID_24390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFERRID_24400 PF00384 Molybdopterin oxidoreductase AFERRID_24420 PF02634 FdhD/NarQ family AFERRID_24440 PF00111 2Fe-2S iron-sulfur cluster binding domain AFERRID_24440 PF00175 Oxidoreductase NAD-binding domain AFERRID_24440 PF00970 Oxidoreductase FAD-binding domain AFERRID_24450 PF03063 Prismane/CO dehydrogenase family AFERRID_24460 PF13545 Crp-like helix-turn-helix domain AFERRID_24460 PF00027 Cyclic nucleotide-binding domain AFERRID_24480 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AFERRID_24490 PF00361 Proton-conducting membrane transporter AFERRID_24490 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFERRID_24500 PF13183 4Fe-4S dicluster domain AFERRID_24500 PF02754 Cysteine-rich domain AFERRID_24510 PF01565 FAD binding domain AFERRID_24520 PF01565 FAD binding domain AFERRID_24520 PF02913 FAD linked oxidases, C-terminal domain AFERRID_24550 PF01614 Bacterial transcriptional regulator AFERRID_24550 PF09339 IclR helix-turn-helix domain AFERRID_24590 PF01979 Amidohydrolase family AFERRID_24600 PF00920 Dehydratase family AFERRID_24610 PF01300 Telomere recombination AFERRID_24610 PF03481 Putative GTP-binding controlling metal-binding AFERRID_24640 PF01116 Fructose-bisphosphate aldolase class-II AFERRID_24660 PF08406 CbbQ/NirQ/NorQ C-terminal AFERRID_24660 PF07728 AAA domain (dynein-related subfamily) AFERRID_24680 PF13614 AAA domain AFERRID_24700 PF00210 Ferritin-like domain AFERRID_24750 PF03319 Ethanolamine utilisation protein EutN/carboxysome AFERRID_24790 PF00101 Ribulose bisphosphate carboxylase, small chain AFERRID_24800 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFERRID_24800 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFERRID_24810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_24810 PF03466 LysR substrate binding domain AFERRID_24830 PF04335 VirB8 protein AFERRID_24880 PF01464 Transglycosylase SLT domain AFERRID_24890 PF02534 Type IV secretory system Conjugative DNA transfer AFERRID_24930 PF00990 Diguanylate cyclase, GGDEF domain AFERRID_24930 PF00563 EAL domain AFERRID_24930 PF13188 PAS domain AFERRID_24930 PF03707 Bacterial signalling protein N terminal repeat AFERRID_24950 PF00563 EAL domain AFERRID_24950 PF00990 Diguanylate cyclase, GGDEF domain AFERRID_24950 PF03707 Bacterial signalling protein N terminal repeat AFERRID_25020 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_25020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_25060 PF02798 Glutathione S-transferase, N-terminal domain AFERRID_25060 PF00043 Glutathione S-transferase, C-terminal domain AFERRID_25090 PF01638 HxlR-like helix-turn-helix AFERRID_25150 PF17762 HTH domain found in ParB protein AFERRID_25150 PF02195 ParB-like nuclease domain AFERRID_25160 PF13614 AAA domain AFERRID_25190 PF00248 Aldo/keto reductase family AFERRID_25200 PF03707 Bacterial signalling protein N terminal repeat AFERRID_25200 PF00990 Diguanylate cyclase, GGDEF domain AFERRID_25200 PF00563 EAL domain AFERRID_25290 PF01381 Helix-turn-helix AFERRID_25320 PF01751 Toprim domain AFERRID_25320 PF01131 DNA topoisomerase AFERRID_25340 PF13005 zinc-finger binding domain of transposase IS66 AFERRID_25340 PF13817 IS66 C-terminal element AFERRID_25340 PF13007 Transposase C of IS166 homeodomain AFERRID_25340 PF03050 Transposase IS66 family AFERRID_25370 PF02798 Glutathione S-transferase, N-terminal domain AFERRID_25410 PF00665 Integrase core domain AFERRID_25420 PF01695 IstB-like ATP binding protein AFERRID_25430 PF00484 Carbonic anhydrase AFERRID_25460 PF13005 zinc-finger binding domain of transposase IS66 AFERRID_25460 PF03050 Transposase IS66 family AFERRID_25460 PF13817 IS66 C-terminal element AFERRID_25460 PF13007 Transposase C of IS166 homeodomain AFERRID_25520 PF05190 MutS family domain IV AFERRID_25520 PF05192 MutS domain III AFERRID_25520 PF05188 MutS domain II AFERRID_25520 PF00488 MutS domain V AFERRID_25520 PF01624 MutS domain I AFERRID_25540 PF00534 Glycosyl transferases group 1 AFERRID_25540 PF13439 Glycosyltransferase Family 4 AFERRID_25550 PF01027 Inhibitor of apoptosis-promoting Bax1 AFERRID_25590 PF01565 FAD binding domain AFERRID_25590 PF02913 FAD linked oxidases, C-terminal domain AFERRID_25600 PF02569 Pantoate-beta-alanine ligase AFERRID_25610 PF02548 Ketopantoate hydroxymethyltransferase AFERRID_25620 PF01712 Deoxynucleoside kinase AFERRID_25630 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFERRID_25640 PF12627 Probable RNA and SrmB- binding site of polymerase A AFERRID_25640 PF01966 HD domain AFERRID_25640 PF01743 Poly A polymerase head domain AFERRID_25650 PF01743 Poly A polymerase head domain AFERRID_25650 PF12627 Probable RNA and SrmB- binding site of polymerase A AFERRID_25650 PF12626 Polymerase A arginine-rich C-terminus AFERRID_25660 PF00535 Glycosyl transferase family 2 AFERRID_25670 PF00571 CBS domain AFERRID_25670 PF00478 IMP dehydrogenase / GMP reductase domain AFERRID_25680 PF00958 GMP synthase C terminal domain AFERRID_25680 PF00117 Glutamine amidotransferase class-I AFERRID_25680 PF02540 NAD synthase AFERRID_25690 PF13356 Arm DNA-binding domain AFERRID_25690 PF00589 Phage integrase family AFERRID_25760 PF01695 IstB-like ATP binding protein AFERRID_25790 PF00436 Single-strand binding protein family AFERRID_25820 PF09015 NgoMIV restriction enzyme AFERRID_25830 PF00145 C-5 cytosine-specific DNA methylase AFERRID_25860 PF01048 Phosphorylase superfamily AFERRID_25920 PF00216 Bacterial DNA-binding protein AFERRID_25940 PF00216 Bacterial DNA-binding protein AFERRID_25960 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AFERRID_25960 PF14490 Helix-hairpin-helix containing domain AFERRID_25960 PF13538 UvrD-like helicase C-terminal domain AFERRID_25990 PF00717 Peptidase S24-like AFERRID_26000 PF13438 Domain of unknown function (DUF4113) AFERRID_26000 PF00817 impB/mucB/samB family AFERRID_26000 PF11798 IMS family HHH motif AFERRID_26000 PF11799 impB/mucB/samB family C-terminal domain AFERRID_26030 PF00535 Glycosyl transferase family 2 AFERRID_26110 PF00990 Diguanylate cyclase, GGDEF domain AFERRID_26110 PF03707 Bacterial signalling protein N terminal repeat AFERRID_26110 PF00563 EAL domain AFERRID_26150 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AFERRID_26160 PF13936 Helix-turn-helix domain AFERRID_26160 PF00665 Integrase core domain AFERRID_26170 PF00216 Bacterial DNA-binding protein AFERRID_26200 PF01906 Putative heavy-metal-binding AFERRID_26230 PF00665 Integrase core domain AFERRID_26240 PF01695 IstB-like ATP binding protein AFERRID_26300 PF13005 zinc-finger binding domain of transposase IS66 AFERRID_26300 PF13007 Transposase C of IS166 homeodomain AFERRID_26300 PF13817 IS66 C-terminal element AFERRID_26300 PF03050 Transposase IS66 family AFERRID_26330 PF13362 Toprim domain AFERRID_26330 PF18818 Metallopeptidase superfamily domain AFERRID_26330 PF08401 Domain of unknown function (DUF1738) AFERRID_26430 PF00437 Type II/IV secretion system protein AFERRID_26480 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AFERRID_26560 PF13005 zinc-finger binding domain of transposase IS66 AFERRID_26560 PF13007 Transposase C of IS166 homeodomain AFERRID_26560 PF13817 IS66 C-terminal element AFERRID_26560 PF03050 Transposase IS66 family AFERRID_26600 PF04335 VirB8 protein AFERRID_26660 PF01464 Transglycosylase SLT domain AFERRID_26670 PF02534 Type IV secretory system Conjugative DNA transfer AFERRID_26790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_26790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_26830 PF00043 Glutathione S-transferase, C-terminal domain AFERRID_26830 PF02798 Glutathione S-transferase, N-terminal domain AFERRID_26860 PF01638 HxlR-like helix-turn-helix AFERRID_26950 PF02195 ParB-like nuclease domain AFERRID_26950 PF17762 HTH domain found in ParB protein AFERRID_26960 PF13614 AAA domain AFERRID_27060 PF05973 Phage derived protein Gp49-like (DUF891) AFERRID_27070 PF01381 Helix-turn-helix AFERRID_27100 PF01751 Toprim domain AFERRID_27100 PF01131 DNA topoisomerase AFERRID_27130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFERRID_27130 PF01367 5'-3' exonuclease, C-terminal SAM fold AFERRID_27130 PF00476 DNA polymerase family A AFERRID_27170 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFERRID_27180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFERRID_27200 PF17954 Quercetinase C-terminal cupin domain AFERRID_27200 PF02678 Pirin AFERRID_27210 PF03358 NADPH-dependent FMN reductase AFERRID_27220 PF07681 DoxX AFERRID_27250 PF07690 Major Facilitator Superfamily AFERRID_27260 PF00582 Universal stress protein family AFERRID_27270 PF00106 short chain dehydrogenase AFERRID_27280 PF00248 Aldo/keto reductase family AFERRID_27340 PF00756 Putative esterase AFERRID_27350 PF08240 Alcohol dehydrogenase GroES-like domain AFERRID_27350 PF00107 Zinc-binding dehydrogenase AFERRID_27360 PF02634 FdhD/NarQ family AFERRID_27380 PF00384 Molybdopterin oxidoreductase AFERRID_27390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFERRID_27390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFERRID_27400 PF00881 Nitroreductase family AFERRID_27410 PF00582 Universal stress protein family AFERRID_27420 PF07690 Major Facilitator Superfamily AFERRID_27510 PF13520 Amino acid permease AFERRID_27520 PF00696 Amino acid kinase family AFERRID_27520 PF01472 PUA domain AFERRID_27530 PF00924 Mechanosensitive ion channel AFERRID_27530 PF12794 Mechanosensitive ion channel inner membrane domain 1 AFERRID_27530 PF12795 Mechanosensitive ion channel porin domain AFERRID_27570 PF01300 Telomere recombination AFERRID_27580 PF02163 Peptidase family M50 AFERRID_27590 PF00579 tRNA synthetases class I (W and Y) AFERRID_27600 PF02616 Segregation and condensation protein ScpA AFERRID_27610 PF04079 Segregation and condensation complex subunit ScpB AFERRID_27630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_27640 PF00849 RNA pseudouridylate synthase AFERRID_27640 PF01479 S4 domain AFERRID_27650 PF00730 HhH-GPD superfamily base excision DNA repair protein AFERRID_27650 PF10576 Iron-sulfur binding domain of endonuclease III AFERRID_27680 PF07690 Major Facilitator Superfamily AFERRID_27700 PF00343 Carbohydrate phosphorylase AFERRID_27700 PF11897 Protein of unknown function (DUF3417) AFERRID_27720 PF02887 Pyruvate kinase, alpha/beta domain AFERRID_27720 PF00224 Pyruvate kinase, barrel domain AFERRID_27720 PF00391 PEP-utilising enzyme, mobile domain AFERRID_27740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_27740 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_27760 PF00294 pfkB family carbohydrate kinase AFERRID_27770 PF01515 Phosphate acetyl/butaryl transferase AFERRID_27780 PF00083 Sugar (and other) transporter AFERRID_27790 PF00871 Acetokinase family AFERRID_27800 PF00364 Biotin-requiring enzyme AFERRID_27800 PF02817 e3 binding domain AFERRID_27800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFERRID_27810 PF02779 Transketolase, pyrimidine binding domain AFERRID_27810 PF02780 Transketolase, C-terminal domain AFERRID_27820 PF00676 Dehydrogenase E1 component AFERRID_27840 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AFERRID_27840 PF01676 Metalloenzyme superfamily AFERRID_27850 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFERRID_27850 PF02896 PEP-utilising enzyme, TIM barrel domain AFERRID_27850 PF00391 PEP-utilising enzyme, mobile domain AFERRID_27870 PF03330 Lytic transglycolase AFERRID_27870 PF05036 Sporulation related domain AFERRID_27880 PF01546 Peptidase family M20/M25/M40 AFERRID_27880 PF07687 Peptidase dimerisation domain AFERRID_27890 PF00132 Bacterial transferase hexapeptide (six repeats) AFERRID_27890 PF14602 Hexapeptide repeat of succinyl-transferase AFERRID_27890 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AFERRID_27900 PF00155 Aminotransferase class I and II AFERRID_27930 PF13419 Haloacid dehalogenase-like hydrolase AFERRID_27950 PF01979 Amidohydrolase family AFERRID_27970 PF00877 NlpC/P60 family AFERRID_28060 PF01850 PIN domain AFERRID_28070 PF01420 Type I restriction modification DNA specificity domain AFERRID_28150 PF00561 alpha/beta hydrolase fold AFERRID_28160 PF00893 Small Multidrug Resistance protein AFERRID_28180 PF00583 Acetyltransferase (GNAT) family AFERRID_28300 PF13005 zinc-finger binding domain of transposase IS66 AFERRID_28300 PF13007 Transposase C of IS166 homeodomain AFERRID_28300 PF03050 Transposase IS66 family AFERRID_28300 PF13817 IS66 C-terminal element AFERRID_28370 PF00717 Peptidase S24-like AFERRID_28370 PF01726 LexA DNA binding domain AFERRID_28400 PF01336 OB-fold nucleic acid binding domain AFERRID_28400 PF02811 PHP domain AFERRID_28400 PF14579 Helix-hairpin-helix motif AFERRID_28400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFERRID_28400 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFERRID_28420 PF11940 Domain of unknown function (DUF3458) Ig-like fold AFERRID_28420 PF01433 Peptidase family M1 domain AFERRID_28420 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AFERRID_28450 PF13089 Polyphosphate kinase N-terminal domain AFERRID_28450 PF17941 Polyphosphate kinase C-terminal domain 1 AFERRID_28450 PF13090 Polyphosphate kinase C-terminal domain 2 AFERRID_28450 PF02503 Polyphosphate kinase middle domain AFERRID_28460 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFERRID_28460 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFERRID_28470 PF00873 AcrB/AcrD/AcrF family AFERRID_28480 PF13533 Biotin-lipoyl like AFERRID_28490 PF02321 Outer membrane efflux protein AFERRID_28510 PF02545 Maf-like protein AFERRID_28520 PF00311 Phosphoenolpyruvate carboxylase AFERRID_28530 PF17209 Hfq protein AFERRID_28540 PF13167 GTP-binding GTPase N-terminal AFERRID_28540 PF01926 50S ribosome-binding GTPase AFERRID_28540 PF16360 GTP-binding GTPase Middle Region AFERRID_28550 PF01145 SPFH domain / Band 7 family AFERRID_28560 PF01145 SPFH domain / Band 7 family AFERRID_28570 PF13393 Histidyl-tRNA synthetase AFERRID_28580 PF13393 Histidyl-tRNA synthetase AFERRID_28590 PF00709 Adenylosuccinate synthetase AFERRID_28600 PF17876 Cold shock domain AFERRID_28600 PF08461 Ribonuclease R winged-helix domain AFERRID_28600 PF08206 Ribonuclease B OB domain AFERRID_28600 PF00773 RNB domain AFERRID_28610 PF03976 Polyphosphate kinase 2 (PPK2) AFERRID_28620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_28620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_28630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFERRID_28630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFERRID_28640 PF00994 Probable molybdopterin binding domain AFERRID_28640 PF02464 Competence-damaged protein AFERRID_28650 PF00551 Formyl transferase AFERRID_28660 PF00586 AIR synthase related protein, N-terminal domain AFERRID_28660 PF02769 AIR synthase related protein, C-terminal domain AFERRID_28670 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFERRID_28670 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFERRID_28680 PF01066 CDP-alcohol phosphatidyltransferase AFERRID_28690 PF08299 Bacterial dnaA protein helix-turn-helix AFERRID_28690 PF11638 DnaA N-terminal domain AFERRID_28690 PF00308 Bacterial dnaA protein AFERRID_28700 PF03631 Virulence factor BrkB AFERRID_28720 PF01783 Ribosomal L32p protein family AFERRID_28730 PF02504 Fatty acid synthesis protein AFERRID_28740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFERRID_28740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFERRID_28750 PF00698 Acyl transferase domain AFERRID_28760 PF00698 Acyl transferase domain AFERRID_28780 PF00550 Phosphopantetheine attachment site AFERRID_28790 PF00109 Beta-ketoacyl synthase, N-terminal domain AFERRID_28790 PF02801 Beta-ketoacyl synthase, C-terminal domain AFERRID_28810 PF02618 YceG-like family AFERRID_28820 PF02223 Thymidylate kinase AFERRID_28830 PF09115 DNA polymerase III, delta subunit, C terminal AFERRID_28850 PF12169 DNA polymerase III subunits gamma and tau domain III AFERRID_28850 PF12170 DNA polymerase III tau subunit V interacting with alpha AFERRID_28850 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AFERRID_28860 PF02575 YbaB/EbfC DNA-binding family AFERRID_28870 PF13662 Toprim domain AFERRID_28870 PF02132 RecR protein AFERRID_28880 PF00909 Ammonium Transporter Family AFERRID_28890 PF01256 Carbohydrate kinase AFERRID_28890 PF03853 YjeF-related protein N-terminus AFERRID_28900 PF00202 Aminotransferase class-III AFERRID_28920 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFERRID_28930 PF01119 DNA mismatch repair protein, C-terminal domain AFERRID_28930 PF08676 MutL C terminal dimerisation domain AFERRID_28960 PF00334 Nucleoside diphosphate kinase AFERRID_28970 PF04055 Radical SAM superfamily AFERRID_28990 PF13464 Domain of unknown function (DUF4115) AFERRID_29000 PF04551 GcpE protein AFERRID_29010 PF03129 Anticodon binding domain AFERRID_29010 PF13393 Histidyl-tRNA synthetase AFERRID_29040 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFERRID_29040 PF01926 50S ribosome-binding GTPase AFERRID_29080 PF12849 PBP superfamily domain AFERRID_29090 PF00528 Binding-protein-dependent transport system inner membrane component AFERRID_29100 PF00528 Binding-protein-dependent transport system inner membrane component AFERRID_29140 PF01925 Sulfite exporter TauE/SafE AFERRID_29320 PF00873 AcrB/AcrD/AcrF family AFERRID_29350 PF01161 Phosphatidylethanolamine-binding protein AFERRID_29360 PF11953 Domain of unknown function (DUF3470) AFERRID_29360 PF00037 4Fe-4S binding domain AFERRID_29380 PF03595 Voltage-dependent anion channel AFERRID_29400 PF00730 HhH-GPD superfamily base excision DNA repair protein AFERRID_29400 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AFERRID_29420 PF00535 Glycosyl transferase family 2 AFERRID_29470 PF00732 GMC oxidoreductase AFERRID_29470 PF05199 GMC oxidoreductase AFERRID_29490 PF00723 Glycosyl hydrolases family 15 AFERRID_29490 PF09137 Glucodextranase, domain N AFERRID_29510 PF01266 FAD dependent oxidoreductase AFERRID_29530 PF17243 POTRA domain TamA domain 1 AFERRID_29530 PF07244 Surface antigen variable number repeat AFERRID_29530 PF01103 Surface antigen AFERRID_29570 PF00034 Cytochrome c AFERRID_29610 PF01370 NAD dependent epimerase/dehydratase family AFERRID_29620 PF01370 NAD dependent epimerase/dehydratase family AFERRID_29630 PF02254 TrkA-N domain AFERRID_29630 PF02080 TrkA-C domain AFERRID_29630 PF00999 Sodium/hydrogen exchanger family AFERRID_29640 PF16177 Acetyl-coenzyme A synthetase N-terminus AFERRID_29640 PF00501 AMP-binding enzyme AFERRID_29640 PF13193 AMP-binding enzyme C-terminal domain AFERRID_29650 PF10431 C-terminal, D2-small domain, of ClpB protein AFERRID_29650 PF02861 Clp amino terminal domain, pathogenicity island component AFERRID_29650 PF17871 AAA lid domain AFERRID_29650 PF07724 AAA domain (Cdc48 subfamily) AFERRID_29650 PF00004 ATPase family associated with various cellular activities (AAA) AFERRID_29670 PF01264 Chorismate synthase AFERRID_29680 PF02649 Type I GTP cyclohydrolase folE2 AFERRID_29690 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFERRID_29690 PF02780 Transketolase, C-terminal domain AFERRID_29690 PF02779 Transketolase, pyrimidine binding domain AFERRID_29700 PF00348 Polyprenyl synthetase AFERRID_29710 PF02609 Exonuclease VII small subunit AFERRID_29720 PF07690 Major Facilitator Superfamily AFERRID_29740 PF00085 Thioredoxin AFERRID_29750 PF02601 Exonuclease VII, large subunit AFERRID_29750 PF13742 OB-fold nucleic acid binding domain AFERRID_29760 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFERRID_29760 PF13360 PQQ-like domain AFERRID_29760 PF01011 PQQ enzyme repeat AFERRID_29790 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFERRID_29800 PF00149 Calcineurin-like phosphoesterase AFERRID_29810 PF00690 Cation transporter/ATPase, N-terminus AFERRID_29810 PF00689 Cation transporting ATPase, C-terminus AFERRID_29820 PF00682 HMGL-like AFERRID_29820 PF08502 LeuA allosteric (dimerisation) domain AFERRID_29840 PF01037 Lrp/AsnC ligand binding domain AFERRID_29870 PF03466 LysR substrate binding domain AFERRID_29870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFERRID_29880 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFERRID_29900 PF00196 Bacterial regulatory proteins, luxR family AFERRID_29900 PF03472 Autoinducer binding domain AFERRID_29920 PF00765 Autoinducer synthase AFERRID_29980 PF17074 Darcynin, domain of unknown function AFERRID_29990 PF01047 MarR family AFERRID_30000 PF02627 Carboxymuconolactone decarboxylase family AFERRID_30060 PF00664 ABC transporter transmembrane region AFERRID_30060 PF00005 ABC transporter AFERRID_30070 PF00664 ABC transporter transmembrane region AFERRID_30070 PF00005 ABC transporter AFERRID_30080 PF00403 Heavy-metal-associated domain AFERRID_30090 PF00155 Aminotransferase class I and II AFERRID_30100 PF02222 ATP-grasp domain AFERRID_30100 PF01370 NAD dependent epimerase/dehydratase family AFERRID_30120 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFERRID_30120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFERRID_30130 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFERRID_30130 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFERRID_30140 PF01022 Bacterial regulatory protein, arsR family AFERRID_30150 PF01207 Dihydrouridine synthase (Dus) AFERRID_30160 PF00589 Phage integrase family AFERRID_30180 PF03743 Bacterial conjugation TrbI-like protein AFERRID_30190 PF03524 Conjugal transfer protein AFERRID_30230 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AFERRID_t00250 PF00155 Aminotransferase class I and II