locus-tag class description Acife_0001 PF00308 Bacterial dnaA protein Acife_0001 PF08299 Bacterial dnaA protein helix-turn-helix Acife_0001 PF11638 DnaA N-terminal domain Acife_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Acife_0002 PF02767 DNA polymerase III beta subunit, central domain Acife_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Acife_0003 PF02463 RecF/RecN/SMC N terminal domain Acife_0004 PF00204 DNA gyrase B Acife_0004 PF00986 DNA gyrase B subunit, carboxyl terminus Acife_0004 PF18053 DNA gyrase B subunit insert domain Acife_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_0004 PF01751 Toprim domain Acife_0006 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_0007 PF03776 Septum formation topological specificity factor MinE Acife_0008 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Acife_0009 PF03775 Septum formation inhibitor MinC, C-terminal domain Acife_0009 PF05209 Septum formation inhibitor MinC, N-terminal domain Acife_0010 PF11953 Domain of unknown function (DUF3470) Acife_0010 PF00037 4Fe-4S binding domain Acife_0011 PF13368 Topoisomerase C-terminal repeat Acife_0011 PF01131 DNA topoisomerase Acife_0011 PF01751 Toprim domain Acife_0012 PF04361 Protein of unknown function (DUF494) Acife_0013 PF02481 DNA recombination-mediator protein A Acife_0013 PF17782 DprA winged helix domain Acife_0014 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Acife_0014 PF01476 LysM domain Acife_0015 PF01327 Polypeptide deformylase Acife_0016 PF02911 Formyl transferase, C-terminal domain Acife_0016 PF00551 Formyl transferase Acife_0017 PF01189 16S rRNA methyltransferase RsmB/F Acife_0017 PF01029 NusB family Acife_0019 PF00512 His Kinase A (phospho-acceptor) domain Acife_0019 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_0019 PF00989 PAS fold Acife_0019 PF00672 HAMP domain Acife_0020 PF02954 Bacterial regulatory protein, Fis family Acife_0020 PF00158 Sigma-54 interaction domain Acife_0020 PF00072 Response regulator receiver domain Acife_0022 PF02743 Cache domain Acife_0022 PF00672 HAMP domain Acife_0022 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Acife_0024 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Acife_0024 PF06165 Glycosyltransferase family 36 Acife_0024 PF10091 Putative glucoamylase Acife_0027 PF03707 Bacterial signalling protein N terminal repeat Acife_0027 PF00990 Diguanylate cyclase, GGDEF domain Acife_0027 PF00563 EAL domain Acife_0028 PF03960 ArsC family Acife_0031 PF01106 NifU-like domain Acife_0031 PF01592 NifU-like N terminal domain Acife_0031 PF04324 BFD-like [2Fe-2S] binding domain Acife_0032 PF18693 TRAM domain Acife_0032 PF04055 Radical SAM superfamily Acife_0032 PF00919 Uncharacterized protein family UPF0004 Acife_0033 PF02152 Dihydroneopterin aldolase Acife_0034 PF02660 Glycerol-3-phosphate acyltransferase Acife_0035 PF00814 Glycoprotease family Acife_0036 PF04305 Protein of unknown function (DUF455) Acife_0037 PF01011 PQQ enzyme repeat Acife_0037 PF13570 PQQ-like domain Acife_0037 PF13360 PQQ-like domain Acife_0038 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Acife_0039 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Acife_0049 PF09297 NADH pyrophosphatase zinc ribbon domain Acife_0049 PF00293 NUDIX domain Acife_0050 PF00873 AcrB/AcrD/AcrF family Acife_0053 PF00486 Transcriptional regulatory protein, C terminal Acife_0053 PF00072 Response regulator receiver domain Acife_0054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_0054 PF00672 HAMP domain Acife_0054 PF00512 His Kinase A (phospho-acceptor) domain Acife_0055 PF01566 Natural resistance-associated macrophage protein Acife_0056 PF04012 PspA/IM30 family Acife_0057 PF01906 Putative heavy-metal-binding Acife_0062 PF00005 ABC transporter Acife_0063 PF00528 Binding-protein-dependent transport system inner membrane component Acife_0064 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Acife_0066 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_0067 PF11953 Domain of unknown function (DUF3470) Acife_0067 PF00037 4Fe-4S binding domain Acife_0070 PF00890 FAD binding domain Acife_0070 PF02910 Fumarate reductase flavoprotein C-term Acife_0072 PF06969 HemN C-terminal domain Acife_0072 PF04055 Radical SAM superfamily Acife_0073 PF03466 LysR substrate binding domain Acife_0073 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acife_0075 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Acife_0077 PF01565 FAD binding domain Acife_0077 PF02913 FAD linked oxidases, C-terminal domain Acife_0078 PF13580 SIS domain Acife_0079 PF02021 Uncharacterised protein family UPF0102 Acife_0080 PF04348 LppC putative lipoprotein Acife_0081 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Acife_0082 PF03150 Di-haem cytochrome c peroxidase Acife_0082 PF00034 Cytochrome c Acife_0083 PF05140 ResB-like family Acife_0084 PF01578 Cytochrome C assembly protein Acife_0085 PF00313 'Cold-shock' DNA-binding domain Acife_0087 PF00990 Diguanylate cyclase, GGDEF domain Acife_0087 PF03707 Bacterial signalling protein N terminal repeat Acife_0087 PF00563 EAL domain Acife_0088 PF00575 S1 RNA binding domain Acife_0088 PF10150 Ribonuclease E/G family Acife_0089 PF02545 Maf-like protein Acife_0092 PF02590 Predicted SPOUT methyltransferase Acife_0094 PF01467 Cytidylyltransferase-like Acife_0096 PF01625 Peptide methionine sulfoxide reductase Acife_0097 PF01641 SelR domain Acife_0099 PF04349 Periplasmic glucan biosynthesis protein, MdoG Acife_0103 PF01618 MotA/TolQ/ExbB proton channel family Acife_0104 PF02472 Biopolymer transport protein ExbD/TolR Acife_0110 PF00690 Cation transporter/ATPase, N-terminus Acife_0110 PF00689 Cation transporting ATPase, C-terminus Acife_0111 PF13538 UvrD-like helicase C-terminal domain Acife_0112 PF00580 UvrD/REP helicase N-terminal domain Acife_0112 PF12705 PD-(D/E)XK nuclease superfamily Acife_0112 PF13361 UvrD-like helicase C-terminal domain Acife_0113 PF17946 RecC C-terminal domain Acife_0115 PF05114 Protein of unknown function (DUF692) Acife_0117 PF03279 Bacterial lipid A biosynthesis acyltransferase Acife_0122 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Acife_0130 PF14667 Polysaccharide biosynthesis C-terminal domain Acife_0130 PF01943 Polysaccharide biosynthesis protein Acife_0132 PF00691 OmpA family Acife_0134 PF04055 Radical SAM superfamily Acife_0135 PF06508 Queuosine biosynthesis protein QueC Acife_0136 PF04052 TolB amino-terminal domain Acife_0136 PF07676 WD40-like Beta Propeller Repeat Acife_0138 PF02472 Biopolymer transport protein ExbD/TolR Acife_0139 PF01618 MotA/TolQ/ExbB proton channel family Acife_0140 PF03061 Thioesterase superfamily Acife_0141 PF17864 RuvB AAA lid domain Acife_0141 PF05496 Holliday junction DNA helicase RuvB P-loop domain Acife_0141 PF05491 RuvB C-terminal winged helix domain Acife_0142 PF07499 RuvA, C-terminal domain Acife_0142 PF01330 RuvA N terminal domain Acife_0143 PF02075 Crossover junction endodeoxyribonuclease RuvC Acife_0144 PF01709 Transcriptional regulator Acife_0146 PF02445 Quinolinate synthetase A protein Acife_0147 PF01336 OB-fold nucleic acid binding domain Acife_0147 PF00152 tRNA synthetases class II (D, K and N) Acife_0147 PF02938 GAD domain Acife_0149 PF01914 MarC family integral membrane protein Acife_0151 PF12848 ABC transporter Acife_0151 PF00005 ABC transporter Acife_0152 PF00468 Ribosomal protein L34 Acife_0153 PF00825 Ribonuclease P Acife_0154 PF01809 Putative membrane protein insertion efficiency factor Acife_0155 PF02096 60Kd inner membrane protein Acife_0155 PF14849 YidC periplasmic domain Acife_0156 PF10396 GTP-binding protein TrmE N-terminus Acife_0156 PF01926 50S ribosome-binding GTPase Acife_0156 PF12631 MnmE helical domain Acife_0161 PF11867 Domain of unknown function (DUF3387) Acife_0161 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Acife_0161 PF18766 SWI2/SNF2 ATPase Acife_0165 PF12161 HsdM N-terminal domain Acife_0165 PF02384 N-6 DNA Methylase Acife_0167 PF01061 ABC-2 type transporter Acife_0168 PF00005 ABC transporter Acife_0169 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Acife_0171 PF03232 Ubiquinone biosynthesis protein COQ7 Acife_0172 PF02082 Transcriptional regulator Acife_0174 PF00218 Indole-3-glycerol phosphate synthase Acife_0175 PF00591 Glycosyl transferase family, a/b domain Acife_0175 PF02885 Glycosyl transferase family, helical bundle domain Acife_0176 PF00117 Glutamine amidotransferase class-I Acife_0181 PF00425 chorismate binding enzyme Acife_0181 PF04715 Anthranilate synthase component I, N terminal region Acife_0182 PF13419 Haloacid dehalogenase-like hydrolase Acife_0183 PF00834 Ribulose-phosphate 3 epimerase family Acife_0184 PF01116 Fructose-bisphosphate aldolase class-II Acife_0185 PF00224 Pyruvate kinase, barrel domain Acife_0185 PF02887 Pyruvate kinase, alpha/beta domain Acife_0186 PF00162 Phosphoglycerate kinase Acife_0187 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Acife_0187 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Acife_0188 PF02780 Transketolase, C-terminal domain Acife_0188 PF02779 Transketolase, pyrimidine binding domain Acife_0188 PF00456 Transketolase, thiamine diphosphate binding domain Acife_0189 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Acife_0190 PF00459 Inositol monophosphatase family Acife_0192 PF04452 RNA methyltransferase Acife_0193 PF01544 CorA-like Mg2+ transporter protein Acife_0194 PF02401 LytB protein Acife_0195 PF02646 RmuC family Acife_0196 PF01741 Large-conductance mechanosensitive channel, MscL Acife_0198 PF00873 AcrB/AcrD/AcrF family Acife_0199 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acife_0202 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Acife_0205 PF00583 Acetyltransferase (GNAT) family Acife_0208 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Acife_0215 PF00892 EamA-like transporter family Acife_0217 PF00486 Transcriptional regulatory protein, C terminal Acife_0217 PF00072 Response regulator receiver domain Acife_0218 PF00672 HAMP domain Acife_0218 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_0218 PF00512 His Kinase A (phospho-acceptor) domain Acife_0220 PF00206 Lyase Acife_0220 PF14698 Argininosuccinate lyase C-terminal Acife_0222 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Acife_0222 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Acife_0223 PF00342 Phosphoglucose isomerase Acife_0224 PF07943 Penicillin-binding protein 5, C-terminal domain Acife_0224 PF00768 D-alanyl-D-alanine carboxypeptidase Acife_0225 PF02798 Glutathione S-transferase, N-terminal domain Acife_0225 PF00043 Glutathione S-transferase, C-terminal domain Acife_0226 PF03358 NADPH-dependent FMN reductase Acife_0227 PF01638 HxlR-like helix-turn-helix Acife_0228 PF04264 YceI-like domain Acife_0230 PF00403 Heavy-metal-associated domain Acife_0232 PF00403 Heavy-metal-associated domain Acife_0233 PF07885 Ion channel Acife_0233 PF02254 TrkA-N domain Acife_0235 PF03330 Lytic transglycolase Acife_0235 PF05036 Sporulation related domain Acife_0238 PF00117 Glutamine amidotransferase class-I Acife_0238 PF00958 GMP synthase C terminal domain Acife_0239 PF03707 Bacterial signalling protein N terminal repeat Acife_0239 PF00563 EAL domain Acife_0239 PF00990 Diguanylate cyclase, GGDEF domain Acife_0240 PF00909 Ammonium Transporter Family Acife_0243 PF00909 Ammonium Transporter Family Acife_0244 PF00543 Nitrogen regulatory protein P-II Acife_0246 PF04293 SpoVR like protein Acife_0247 PF04285 Protein of unknown function (DUF444) Acife_0248 PF00909 Ammonium Transporter Family Acife_0249 PF06798 PrkA serine protein kinase C-terminal domain Acife_0249 PF08298 PrkA AAA domain Acife_0253 PF14403 Circularly permuted ATP-grasp type 2 Acife_0253 PF04168 A predicted alpha-helical domain with a conserved ER motif. Acife_0254 PF14403 Circularly permuted ATP-grasp type 2 Acife_0256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_0256 PF00512 His Kinase A (phospho-acceptor) domain Acife_0256 PF00989 PAS fold Acife_0257 PF00072 Response regulator receiver domain Acife_0257 PF00158 Sigma-54 interaction domain Acife_0257 PF02954 Bacterial regulatory protein, Fis family Acife_0259 PF00348 Polyprenyl synthetase Acife_0261 PF00905 Penicillin binding protein transpeptidase domain Acife_0261 PF03717 Penicillin-binding Protein dimerisation domain Acife_0266 PF03167 Uracil DNA glycosylase superfamily Acife_0272 PF00437 Type II/IV secretion system protein Acife_0273 PF00263 Bacterial type II and III secretion system protein Acife_0273 PF03958 Bacterial type II/III secretion system short domain Acife_0281 PF05736 OprF membrane domain Acife_0281 PF00691 OmpA family Acife_0289 PF02978 Signal peptide binding domain Acife_0289 PF02881 SRP54-type protein, helical bundle domain Acife_0289 PF00448 SRP54-type protein, GTPase domain Acife_0290 PF00886 Ribosomal protein S16 Acife_0291 PF05239 PRC-barrel domain Acife_0291 PF01782 RimM N-terminal domain Acife_0292 PF01746 tRNA (Guanine-1)-methyltransferase Acife_0293 PF01245 Ribosomal protein L19 Acife_0295 PF02899 Phage integrase, N-terminal SAM-like domain Acife_0295 PF00589 Phage integrase family Acife_0296 PF13180 PDZ domain Acife_0296 PF17820 PDZ domain Acife_0297 PF00085 Thioredoxin Acife_0299 PF17755 UvrA DNA-binding domain Acife_0299 PF17760 UvrA interaction domain Acife_0300 PF00436 Single-strand binding protein family Acife_0301 PF02384 N-6 DNA Methylase Acife_0306 PF18766 SWI2/SNF2 ATPase Acife_0306 PF11867 Domain of unknown function (DUF3387) Acife_0306 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Acife_0308 PF04286 Protein of unknown function (DUF445) Acife_0309 PF01177 Asp/Glu/Hydantoin racemase Acife_0310 PF00480 ROK family Acife_0311 PF09094 Domain of unknown function (DUF1925) Acife_0311 PF09095 Domain of unknown function (DUF1926) Acife_0311 PF03065 Glycosyl hydrolase family 57 Acife_0313 PF00483 Nucleotidyl transferase Acife_0314 PF00128 Alpha amylase, catalytic domain Acife_0314 PF02806 Alpha amylase, C-terminal all-beta domain Acife_0314 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Acife_0316 PF01145 SPFH domain / Band 7 family Acife_0317 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Acife_0318 PF00291 Pyridoxal-phosphate dependent enzyme Acife_0322 PF05958 tRNA (Uracil-5-)-methyltransferase Acife_0322 PF01938 TRAM domain Acife_0324 PF13520 Amino acid permease Acife_0325 PF00933 Glycosyl hydrolase family 3 N terminal domain Acife_0326 PF01250 Ribosomal protein S6 Acife_0327 PF01084 Ribosomal protein S18 Acife_0329 PF01281 Ribosomal protein L9, N-terminal domain Acife_0329 PF03948 Ribosomal protein L9, C-terminal domain Acife_0330 PF03796 DnaB-like helicase C terminal domain Acife_0330 PF00772 DnaB-like helicase N terminal domain Acife_0331 PF00842 Alanine racemase, C-terminal domain Acife_0331 PF01168 Alanine racemase, N-terminal domain Acife_0332 PF18073 Rubredoxin metal binding domain Acife_0334 PF00557 Metallopeptidase family M24 Acife_0334 PF05195 Aminopeptidase P, N-terminal domain Acife_0337 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Acife_0337 PF09364 XFP N-terminal domain Acife_0337 PF09363 XFP C-terminal domain Acife_0343 PF02899 Phage integrase, N-terminal SAM-like domain Acife_0343 PF00589 Phage integrase family Acife_0351 PF13495 Phage integrase, N-terminal SAM-like domain Acife_0351 PF00589 Phage integrase family Acife_0357 PF00106 short chain dehydrogenase Acife_0359 PF00216 Bacterial DNA-binding protein Acife_0366 PF00271 Helicase conserved C-terminal domain Acife_0366 PF09369 Domain of unknown function (DUF1998) Acife_0366 PF00270 DEAD/DEAH box helicase Acife_0367 PF00271 Helicase conserved C-terminal domain Acife_0367 PF00176 SNF2 family N-terminal domain Acife_0386 PF06029 AlkA N-terminal domain Acife_0386 PF00730 HhH-GPD superfamily base excision DNA repair protein Acife_0386 PF12833 Helix-turn-helix domain Acife_0386 PF02805 Metal binding domain of Ada Acife_0402 PF00589 Phage integrase family Acife_0414 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA Acife_0415 PF15723 Motility quorum-sensing regulator, toxin of MqsA Acife_0420 PF01695 IstB-like ATP binding protein Acife_0443 PF03466 LysR substrate binding domain Acife_0443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acife_0444 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Acife_0444 PF00361 Proton-conducting membrane transporter Acife_0445 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Acife_0448 PF01979 Amidohydrolase family Acife_0450 PF01047 MarR family Acife_0452 PF04264 YceI-like domain Acife_0456 PF00990 Diguanylate cyclase, GGDEF domain Acife_0456 PF00563 EAL domain Acife_0456 PF03707 Bacterial signalling protein N terminal repeat Acife_0460 PF01548 Transposase Acife_0460 PF02371 Transposase IS116/IS110/IS902 family Acife_0470 PF00127 Copper binding proteins, plastocyanin/azurin family Acife_0486 PF02308 MgtC family Acife_0487 PF00550 Phosphopantetheine attachment site Acife_0489 PF13411 MerR HTH family regulatory protein Acife_0490 PF01545 Cation efflux family Acife_0499 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acife_0500 PF00873 AcrB/AcrD/AcrF family Acife_0518 PF17841 BID domain of Bartonella effector protein (Bep) Acife_0518 PF01443 Viral (Superfamily 1) RNA helicase Acife_0518 PF03389 MobA/MobL family Acife_0520 PF13514 AAA domain Acife_0521 PF00149 Calcineurin-like phosphoesterase Acife_0523 PF00176 SNF2 family N-terminal domain Acife_0523 PF00271 Helicase conserved C-terminal domain Acife_0525 PF18273 Type III R-M EcoP15I C-terminal domain Acife_0525 PF01555 DNA methylase Acife_0527 PF08774 VRR-NUC domain Acife_0527 PF04851 Type III restriction enzyme, res subunit Acife_0529 PF00990 Diguanylate cyclase, GGDEF domain Acife_0529 PF00072 Response regulator receiver domain Acife_0541 PF00437 Type II/IV secretion system protein Acife_0544 PF14572 Phosphoribosyl synthetase-associated domain Acife_0544 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Acife_0545 PF08544 GHMP kinases C terminal Acife_0545 PF00288 GHMP kinases N terminal domain Acife_0546 PF03550 Outer membrane lipoprotein LolB Acife_0548 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Acife_0548 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Acife_0548 PF01488 Shikimate / quinate 5-dehydrogenase Acife_0549 PF03462 PCRF domain Acife_0549 PF00472 RF-1 domain Acife_0550 PF17827 PrmC N-terminal domain Acife_0550 PF05175 Methyltransferase small domain Acife_0551 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Acife_0551 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Acife_0551 PF06827 Zinc finger found in FPG and IleRS Acife_0552 PF00350 Dynamin family Acife_0553 PF00037 4Fe-4S binding domain Acife_0554 PF01467 Cytidylyltransferase-like Acife_0556 PF02881 SRP54-type protein, helical bundle domain Acife_0556 PF00448 SRP54-type protein, GTPase domain Acife_0557 PF00005 ABC transporter Acife_0558 PF18075 FtsX extracellular domain Acife_0559 PF00140 Sigma-70 factor, region 1.2 Acife_0559 PF04545 Sigma-70, region 4 Acife_0559 PF04542 Sigma-70 region 2 Acife_0561 PF00004 ATPase family associated with various cellular activities (AAA) Acife_0561 PF07724 AAA domain (Cdc48 subfamily) Acife_0562 PF00227 Proteasome subunit Acife_0563 PF02899 Phage integrase, N-terminal SAM-like domain Acife_0563 PF00589 Phage integrase family Acife_0566 PF01678 Diaminopimelate epimerase Acife_0569 PF01209 ubiE/COQ5 methyltransferase family Acife_0570 PF04379 ApaG domain Acife_0571 PF01985 CRS1 / YhbY (CRM) domain Acife_0572 PF01728 FtsJ-like methyltransferase Acife_0574 PF03063 Prismane/CO dehydrogenase family Acife_0575 PF00111 2Fe-2S iron-sulfur cluster binding domain Acife_0575 PF00970 Oxidoreductase FAD-binding domain Acife_0575 PF00175 Oxidoreductase NAD-binding domain Acife_0577 PF10576 Iron-sulfur binding domain of endonuclease III Acife_0577 PF00633 Helix-hairpin-helix motif Acife_0577 PF00730 HhH-GPD superfamily base excision DNA repair protein Acife_0579 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Acife_0579 PF10996 Beta-Casp domain Acife_0579 PF00753 Metallo-beta-lactamase superfamily Acife_0580 PF00534 Glycosyl transferases group 1 Acife_0580 PF08323 Starch synthase catalytic domain Acife_0584 PF01432 Peptidase family M3 Acife_0584 PF08439 Oligopeptidase F Acife_0585 PF00206 Lyase Acife_0585 PF10415 Fumarase C C-terminus Acife_0586 PF18152 DAHP synthase ferredoxin-like domain Acife_0586 PF00793 DAHP synthetase I family Acife_0587 PF01588 Putative tRNA binding domain Acife_0587 PF09334 tRNA synthetases class I (M) Acife_0588 PF00830 Ribosomal L28 family Acife_0589 PF00471 Ribosomal protein L33 Acife_0590 PF01628 HrcA protein C terminal domain Acife_0590 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Acife_0591 PF01025 GrpE Acife_0592 PF00012 Hsp70 protein Acife_0593 PF00684 DnaJ central domain Acife_0593 PF01556 DnaJ C terminal domain Acife_0593 PF00226 DnaJ domain Acife_0594 PF01113 Dihydrodipicolinate reductase, N-terminus Acife_0594 PF05173 Dihydrodipicolinate reductase, C-terminus Acife_0596 PF10609 NUBPL iron-transfer P-loop NTPase Acife_0597 PF00692 dUTPase Acife_0598 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Acife_0598 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_0602 PF00230 Major intrinsic protein Acife_0606 PF16657 Maltogenic Amylase, C-terminal domain Acife_0606 PF00128 Alpha amylase, catalytic domain Acife_0607 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Acife_0607 PF00128 Alpha amylase, catalytic domain Acife_0608 PF11941 Domain of unknown function (DUF3459) Acife_0608 PF00128 Alpha amylase, catalytic domain Acife_0608 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Acife_0609 PF02446 4-alpha-glucanotransferase Acife_0614 PF00032 Cytochrome b(C-terminal)/b6/petD Acife_0614 PF00033 Cytochrome b/b6/petB Acife_0615 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Acife_0615 PF00355 Rieske [2Fe-2S] domain Acife_0616 PF00106 short chain dehydrogenase Acife_0617 PF00034 Cytochrome c Acife_0621 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acife_0621 PF03466 LysR substrate binding domain Acife_0622 PF00923 Transaldolase/Fructose-6-phosphate aldolase Acife_0624 PF01476 LysM domain Acife_0624 PF01464 Transglycosylase SLT domain Acife_0625 PF00749 tRNA synthetases class I (E and Q), catalytic domain Acife_0626 PF00330 Aconitase family (aconitate hydratase) Acife_0627 PF00180 Isocitrate/isopropylmalate dehydrogenase Acife_0628 PF08442 ATP-grasp domain Acife_0628 PF00549 CoA-ligase Acife_0630 PF02629 CoA binding domain Acife_0630 PF00549 CoA-ligase Acife_0631 PF00795 Carbon-nitrogen hydrolase Acife_0631 PF02540 NAD synthase Acife_0632 PF00543 Nitrogen regulatory protein P-II Acife_0633 PF13525 Outer membrane lipoprotein Acife_0634 PF01479 S4 domain Acife_0634 PF00849 RNA pseudouridylate synthase Acife_0636 PF03079 ARD/ARD' family Acife_0637 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Acife_0637 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Acife_0639 PF00596 Class II Aldolase and Adducin N-terminal domain Acife_0641 PF01327 Polypeptide deformylase Acife_0642 PF01618 MotA/TolQ/ExbB proton channel family Acife_0643 PF02472 Biopolymer transport protein ExbD/TolR Acife_0646 PF01979 Amidohydrolase family Acife_0647 PF00962 Adenosine/AMP deaminase Acife_0649 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Acife_0649 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Acife_0650 PF00111 2Fe-2S iron-sulfur cluster binding domain Acife_0650 PF01799 [2Fe-2S] binding domain Acife_0651 PF00941 FAD binding domain in molybdopterin dehydrogenase Acife_0651 PF03450 CO dehydrogenase flavoprotein C-terminal domain Acife_0653 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) Acife_0654 PF13478 XdhC Rossmann domain Acife_0654 PF02625 XdhC and CoxI family Acife_0656 PF01425 Amidase Acife_0658 PF12804 MobA-like NTP transferase domain Acife_0660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acife_0660 PF03466 LysR substrate binding domain Acife_0663 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Acife_0669 PF01420 Type I restriction modification DNA specificity domain Acife_0675 PF18766 SWI2/SNF2 ATPase Acife_0675 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Acife_0675 PF11867 Domain of unknown function (DUF3387) Acife_0677 PF11455 Protein of unknown function (DUF3018) Acife_0680 PF00483 Nucleotidyl transferase Acife_0682 PF00072 Response regulator receiver domain Acife_0682 PF00158 Sigma-54 interaction domain Acife_0684 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_0684 PF00512 His Kinase A (phospho-acceptor) domain Acife_0685 PF02463 RecF/RecN/SMC N terminal domain Acife_0686 PF01513 ATP-NAD kinase Acife_0687 PF03309 Type III pantothenate kinase Acife_0688 PF02237 Biotin protein ligase C terminal domain Acife_0688 PF03099 Biotin/lipoate A/B protein ligase family Acife_0689 PF00171 Aldehyde dehydrogenase family Acife_0691 PF08721 TnsA endonuclease C terminal Acife_0691 PF08722 TnsA endonuclease N terminal Acife_0692 PF00665 Integrase core domain Acife_0694 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Acife_0694 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Acife_0695 PF00403 Heavy-metal-associated domain Acife_0697 PF00403 Heavy-metal-associated domain Acife_0698 PF00462 Glutaredoxin Acife_0702 PF00239 Resolvase, N terminal domain Acife_0702 PF02796 Helix-turn-helix domain of resolvase Acife_0707 PF00756 Putative esterase Acife_0708 PF08240 Alcohol dehydrogenase GroES-like domain Acife_0708 PF00107 Zinc-binding dehydrogenase Acife_0709 PF04828 Glutathione-dependent formaldehyde-activating enzyme Acife_0710 PF02954 Bacterial regulatory protein, Fis family Acife_0710 PF01590 GAF domain Acife_0710 PF00158 Sigma-54 interaction domain Acife_0715 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Acife_0717 PF10548 P22AR C-terminal domain Acife_0717 PF08346 AntA/AntB antirepressor Acife_0719 PF02534 Type IV secretory system Conjugative DNA transfer Acife_0720 PF07804 HipA-like C-terminal domain Acife_0724 PF13438 Domain of unknown function (DUF4113) Acife_0724 PF00817 impB/mucB/samB family Acife_0724 PF11798 IMS family HHH motif Acife_0724 PF11799 impB/mucB/samB family C-terminal domain Acife_0725 PF00717 Peptidase S24-like Acife_0728 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Acife_0728 PF13538 UvrD-like helicase C-terminal domain Acife_0728 PF14490 Helix-hairpin-helix containing domain Acife_0730 PF00216 Bacterial DNA-binding protein Acife_0734 PF00563 EAL domain Acife_0734 PF00990 Diguanylate cyclase, GGDEF domain Acife_0734 PF03707 Bacterial signalling protein N terminal repeat Acife_0735 PF00543 Nitrogen regulatory protein P-II Acife_0747 PF07693 KAP family P-loop domain Acife_0752 PF00216 Bacterial DNA-binding protein Acife_0754 PF08721 TnsA endonuclease C terminal Acife_0754 PF08722 TnsA endonuclease N terminal Acife_0756 PF00239 Resolvase, N terminal domain Acife_0756 PF02796 Helix-turn-helix domain of resolvase Acife_0757 PF07929 Plasmid pRiA4b ORF-3-like protein Acife_0759 PF02683 Cytochrome C biogenesis protein transmembrane region Acife_0759 PF11412 Disulphide bond corrector protein DsbC Acife_0761 PF08281 Sigma-70, region 4 Acife_0761 PF04542 Sigma-70 region 2 Acife_0768 PF05114 Protein of unknown function (DUF692) Acife_0774 PF13411 MerR HTH family regulatory protein Acife_0780 PF07728 AAA domain (dynein-related subfamily) Acife_0780 PF08406 CbbQ/NirQ/NorQ C-terminal Acife_0782 PF08534 Redoxin Acife_0783 PF00300 Histidine phosphatase superfamily (branch 1) Acife_0784 PF00342 Phosphoglucose isomerase Acife_0785 PF00923 Transaldolase/Fructose-6-phosphate aldolase Acife_0787 PF00403 Heavy-metal-associated domain Acife_0787 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Acife_0787 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_0792 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acife_0792 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Acife_0793 PF03952 Enolase, N-terminal domain Acife_0793 PF00113 Enolase, C-terminal TIM barrel domain Acife_0794 PF02887 Pyruvate kinase, alpha/beta domain Acife_0794 PF00391 PEP-utilising enzyme, mobile domain Acife_0794 PF00224 Pyruvate kinase, barrel domain Acife_0796 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Acife_0796 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_0797 PF00690 Cation transporter/ATPase, N-terminus Acife_0797 PF00689 Cation transporting ATPase, C-terminus Acife_0799 PF00364 Biotin-requiring enzyme Acife_0799 PF02817 e3 binding domain Acife_0799 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Acife_0800 PF02780 Transketolase, C-terminal domain Acife_0800 PF02779 Transketolase, pyrimidine binding domain Acife_0800 PF00364 Biotin-requiring enzyme Acife_0801 PF00676 Dehydrogenase E1 component Acife_0803 PF03976 Polyphosphate kinase 2 (PPK2) Acife_0804 PF00162 Phosphoglycerate kinase Acife_0805 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Acife_0805 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Acife_0811 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acife_0812 PF00873 AcrB/AcrD/AcrF family Acife_0822 PF00873 AcrB/AcrD/AcrF family Acife_0825 PF00403 Heavy-metal-associated domain Acife_0828 PF11426 Tn7 transposition regulator TnsC Acife_0828 PF13401 AAA domain Acife_0832 PF02384 N-6 DNA Methylase Acife_0832 PF12161 HsdM N-terminal domain Acife_0835 PF01420 Type I restriction modification DNA specificity domain Acife_0836 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Acife_0837 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Acife_0838 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Acife_0838 PF00271 Helicase conserved C-terminal domain Acife_0838 PF04851 Type III restriction enzyme, res subunit Acife_0838 PF08463 EcoEI R protein C-terminal Acife_0842 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Acife_0842 PF06144 DNA polymerase III, delta subunit Acife_0844 PF13603 Leucyl-tRNA synthetase, Domain 2 Acife_0844 PF08264 Anticodon-binding domain of tRNA Acife_0844 PF00133 tRNA synthetases class I (I, L, M and V) Acife_0847 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Acife_0851 PF01427 D-ala-D-ala dipeptidase Acife_0852 PF00916 Sulfate permease family Acife_0852 PF01740 STAS domain Acife_0853 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Acife_0853 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Acife_0853 PF06827 Zinc finger found in FPG and IleRS Acife_0855 PF01545 Cation efflux family Acife_0855 PF16916 Dimerisation domain of Zinc Transporter Acife_0856 PF03951 Glutamine synthetase, beta-Grasp domain Acife_0856 PF00120 Glutamine synthetase, catalytic domain Acife_0862 PF04539 Sigma-70 region 3 Acife_0862 PF00140 Sigma-70 factor, region 1.2 Acife_0862 PF04545 Sigma-70, region 4 Acife_0862 PF04542 Sigma-70 region 2 Acife_0863 PF04430 Protein of unknown function (DUF498/DUF598) Acife_0864 PF00155 Aminotransferase class I and II Acife_0865 PF00742 Homoserine dehydrogenase Acife_0865 PF03447 Homoserine dehydrogenase, NAD binding domain Acife_0865 PF01842 ACT domain Acife_0866 PF00291 Pyridoxal-phosphate dependent enzyme Acife_0873 PF17768 RecJ OB domain Acife_0873 PF02272 DHHA1 domain Acife_0873 PF01368 DHH family Acife_0878 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Acife_0882 PF06250 YhcG PDDEXK nuclease domain Acife_0882 PF17761 DUF1016 N-terminal domain Acife_0884 PF10544 T5orf172 domain Acife_0895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acife_0896 PF00873 AcrB/AcrD/AcrF family Acife_0905 PF00158 Sigma-54 interaction domain Acife_0905 PF02954 Bacterial regulatory protein, Fis family Acife_0905 PF00072 Response regulator receiver domain Acife_0915 PF13188 PAS domain Acife_0915 PF03707 Bacterial signalling protein N terminal repeat Acife_0915 PF00990 Diguanylate cyclase, GGDEF domain Acife_0915 PF00563 EAL domain Acife_0916 PF00535 Glycosyl transferase family 2 Acife_0916 PF07238 PilZ domain Acife_0917 PF00990 Diguanylate cyclase, GGDEF domain Acife_0917 PF00563 EAL domain Acife_0917 PF03707 Bacterial signalling protein N terminal repeat Acife_0919 PF02371 Transposase IS116/IS110/IS902 family Acife_0919 PF01548 Transposase Acife_0926 PF01336 OB-fold nucleic acid binding domain Acife_0926 PF00152 tRNA synthetases class II (D, K and N) Acife_0927 PF02687 FtsX-like permease family Acife_0927 PF12704 MacB-like periplasmic core domain Acife_0928 PF00005 ABC transporter Acife_0930 PF00753 Metallo-beta-lactamase superfamily Acife_0930 PF03772 Competence protein Acife_0931 PF01618 MotA/TolQ/ExbB proton channel family Acife_0932 PF02472 Biopolymer transport protein ExbD/TolR Acife_0935 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Acife_0936 PF03966 Trm112p-like protein Acife_0937 PF02348 Cytidylyltransferase Acife_0938 PF00719 Inorganic pyrophosphatase Acife_0949 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Acife_0954 PF08681 Protein of unknown function (DUF1778) Acife_0956 PF03167 Uracil DNA glycosylase superfamily Acife_0957 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Acife_0958 PF02861 Clp amino terminal domain, pathogenicity island component Acife_0958 PF17871 AAA lid domain Acife_0958 PF00004 ATPase family associated with various cellular activities (AAA) Acife_0958 PF07724 AAA domain (Cdc48 subfamily) Acife_0958 PF10431 C-terminal, D2-small domain, of ClpB protein Acife_0959 PF02617 ATP-dependent Clp protease adaptor protein ClpS Acife_0961 PF01965 DJ-1/PfpI family Acife_0962 PF03572 Peptidase family S41 Acife_0962 PF13180 PDZ domain Acife_0964 PF01676 Metalloenzyme superfamily Acife_0964 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Acife_0965 PF00343 Carbohydrate phosphorylase Acife_0967 PF00581 Rhodanese-like domain Acife_0968 PF00294 pfkB family carbohydrate kinase Acife_0970 PF00438 S-adenosylmethionine synthetase, N-terminal domain Acife_0970 PF02773 S-adenosylmethionine synthetase, C-terminal domain Acife_0970 PF02772 S-adenosylmethionine synthetase, central domain Acife_0971 PF05221 S-adenosyl-L-homocysteine hydrolase Acife_0971 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Acife_0972 PF02219 Methylenetetrahydrofolate reductase Acife_0973 PF00485 Phosphoribulokinase / Uridine kinase family Acife_0975 PF00271 Helicase conserved C-terminal domain Acife_0975 PF03880 DbpA RNA binding domain Acife_0975 PF00270 DEAD/DEAH box helicase Acife_0975 PF12343 Cold shock protein DEAD box A Acife_0976 PF00313 'Cold-shock' DNA-binding domain Acife_0977 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Acife_0977 PF00270 DEAD/DEAH box helicase Acife_0977 PF00271 Helicase conserved C-terminal domain Acife_0977 PF17764 3′ DNA-binding domain (3′BD) Acife_0977 PF18074 Primosomal protein N C-terminal domain Acife_0978 PF01040 UbiA prenyltransferase family Acife_0980 PF00398 Ribosomal RNA adenine dimethylase Acife_0982 PF00919 Uncharacterized protein family UPF0004 Acife_0982 PF01938 TRAM domain Acife_0982 PF04055 Radical SAM superfamily Acife_0983 PF02562 PhoH-like protein Acife_0984 PF02130 Uncharacterized protein family UPF0054 Acife_0985 PF03471 Transporter associated domain Acife_0985 PF00571 CBS domain Acife_0986 PF00795 Carbon-nitrogen hydrolase Acife_0987 PF01523 Putative modulator of DNA gyrase Acife_0989 PF00005 ABC transporter Acife_0991 PF00950 ABC 3 transport family Acife_0994 PF01370 NAD dependent epimerase/dehydratase family Acife_0999 PF04101 Glycosyltransferase family 28 C-terminal domain Acife_0999 PF03033 Glycosyltransferase family 28 N-terminal domain Acife_1000 PF00534 Glycosyl transferases group 1 Acife_1000 PF13439 Glycosyltransferase Family 4 Acife_1001 PF13439 Glycosyltransferase Family 4 Acife_1001 PF00534 Glycosyl transferases group 1 Acife_1002 PF00005 ABC transporter Acife_1002 PF00664 ABC transporter transmembrane region Acife_1003 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Acife_1003 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Acife_1003 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Acife_1005 PF00300 Histidine phosphatase superfamily (branch 1) Acife_1008 PF08241 Methyltransferase domain Acife_1009 PF00330 Aconitase family (aconitate hydratase) Acife_1010 PF00694 Aconitase C-terminal domain Acife_1012 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Acife_1012 PF01243 Pyridoxamine 5'-phosphate oxidase Acife_1013 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Acife_1015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Acife_1015 PF06481 COX Aromatic Rich Motif Acife_1016 PF00115 Cytochrome C and Quinol oxidase polypeptide I Acife_1017 PF00510 Cytochrome c oxidase subunit III Acife_1020 PF01040 UbiA prenyltransferase family Acife_1022 PF02673 Bacitracin resistance protein BacA Acife_1023 PF01272 Transcription elongation factor, GreA/GreB, C-term Acife_1023 PF03449 Transcription elongation factor, N-terminal Acife_1024 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Acife_1024 PF02142 MGS-like domain Acife_1024 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Acife_1025 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Acife_1025 PF00117 Glutamine amidotransferase class-I Acife_1028 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Acife_1028 PF06481 COX Aromatic Rich Motif Acife_1029 PF00115 Cytochrome C and Quinol oxidase polypeptide I Acife_1030 PF00510 Cytochrome c oxidase subunit III Acife_1044 PF00005 ABC transporter Acife_1046 PF02796 Helix-turn-helix domain of resolvase Acife_1046 PF00239 Resolvase, N terminal domain Acife_1053 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Acife_1053 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acife_1053 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Acife_1053 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Acife_1057 PF00296 Luciferase-like monooxygenase Acife_1058 PF00929 Exonuclease Acife_1059 PF00072 Response regulator receiver domain Acife_1059 PF00486 Transcriptional regulatory protein, C terminal Acife_1060 PF00512 His Kinase A (phospho-acceptor) domain Acife_1060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_1060 PF00672 HAMP domain Acife_1063 PF01618 MotA/TolQ/ExbB proton channel family Acife_1064 PF02472 Biopolymer transport protein ExbD/TolR Acife_1066 PF04185 Phosphoesterase family Acife_1068 PF01180 Dihydroorotate dehydrogenase Acife_1069 PF01218 Coproporphyrinogen III oxidase Acife_1070 PF01300 Telomere recombination Acife_1071 PF02843 Phosphoribosylglycinamide synthetase, C domain Acife_1071 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Acife_1071 PF02844 Phosphoribosylglycinamide synthetase, N domain Acife_1072 PF01808 AICARFT/IMPCHase bienzyme Acife_1072 PF02142 MGS-like domain Acife_1075 PF02669 K+-transporting ATPase, c chain Acife_1077 PF03814 Potassium-transporting ATPase A subunit Acife_1080 PF13493 Domain of unknown function (DUF4118) Acife_1080 PF13492 GAF domain Acife_1080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_1080 PF00512 His Kinase A (phospho-acceptor) domain Acife_1080 PF02702 Osmosensitive K+ channel His kinase sensor domain Acife_1081 PF00072 Response regulator receiver domain Acife_1081 PF00486 Transcriptional regulatory protein, C terminal Acife_1085 PF13520 Amino acid permease Acife_1088 PF00990 Diguanylate cyclase, GGDEF domain Acife_1088 PF03707 Bacterial signalling protein N terminal repeat Acife_1088 PF00563 EAL domain Acife_1089 PF00905 Penicillin binding protein transpeptidase domain Acife_1089 PF00912 Transglycosylase Acife_1089 PF17092 Penicillin-binding protein OB-like domain Acife_1090 PF00749 tRNA synthetases class I (E and Q), catalytic domain Acife_1091 PF09190 DALR domain Acife_1091 PF01406 tRNA synthetases class I (C) catalytic domain Acife_1092 PF12111 Polyribonucleotide phosphorylase C terminal Acife_1092 PF10150 Ribonuclease E/G family Acife_1092 PF00575 S1 RNA binding domain Acife_1093 PF01479 S4 domain Acife_1093 PF00849 RNA pseudouridylate synthase Acife_1095 PF00459 Inositol monophosphatase family Acife_1096 PF00588 SpoU rRNA Methylase family Acife_1097 PF00132 Bacterial transferase hexapeptide (six repeats) Acife_1098 PF02082 Transcriptional regulator Acife_1099 PF00266 Aminotransferase class-V Acife_1100 PF01592 NifU-like N terminal domain Acife_1101 PF01521 Iron-sulphur cluster biosynthesis Acife_1102 PF07743 HSCB C-terminal oligomerisation domain Acife_1103 PF00012 Hsp70 protein Acife_1104 PF00111 2Fe-2S iron-sulfur cluster binding domain Acife_1105 PF04384 Iron-sulphur cluster assembly Acife_1107 PF01734 Patatin-like phospholipase Acife_1110 PF02384 N-6 DNA Methylase Acife_1111 PF00756 Putative esterase Acife_1112 PF05690 Thiazole biosynthesis protein ThiG Acife_1112 PF02597 ThiS family Acife_1113 PF05690 Thiazole biosynthesis protein ThiG Acife_1115 PF08245 Mur ligase middle domain Acife_1115 PF01225 Mur ligase family, catalytic domain Acife_1115 PF02875 Mur ligase family, glutamate ligase domain Acife_1116 PF02441 Flavoprotein Acife_1117 PF00005 ABC transporter Acife_1118 PF02405 Permease MlaE Acife_1122 PF00899 ThiF family Acife_1126 PF00005 ABC transporter Acife_1127 PF00085 Thioredoxin Acife_1128 PF07498 Rho termination factor, N-terminal domain Acife_1128 PF07497 Rho termination factor, RNA-binding domain Acife_1128 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Acife_1129 PF01197 Ribosomal protein L31 Acife_1130 PF03949 Malic enzyme, NAD binding domain Acife_1130 PF00390 Malic enzyme, N-terminal domain Acife_1131 PF01594 AI-2E family transporter Acife_1132 PF00920 Dehydratase family Acife_1134 PF00583 Acetyltransferase (GNAT) family Acife_1134 PF00696 Amino acid kinase family Acife_1135 PF01722 BolA-like protein Acife_1136 PF03795 YCII-related domain Acife_1137 PF04279 Intracellular septation protein A Acife_1140 PF01381 Helix-turn-helix Acife_1142 PF01909 Nucleotidyltransferase domain Acife_1152 PF01850 PIN domain Acife_1153 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Acife_1155 PF00483 Nucleotidyl transferase Acife_1155 PF01050 Mannose-6-phosphate isomerase Acife_1158 PF16363 GDP-mannose 4,6 dehydratase Acife_1159 PF16363 GDP-mannose 4,6 dehydratase Acife_1166 PF02397 Bacterial sugar transferase Acife_1167 PF00535 Glycosyl transferase family 2 Acife_1168 PF00534 Glycosyl transferases group 1 Acife_1168 PF13439 Glycosyltransferase Family 4 Acife_1170 PF00534 Glycosyl transferases group 1 Acife_1170 PF13439 Glycosyltransferase Family 4 Acife_1171 PF00535 Glycosyl transferase family 2 Acife_1173 PF01370 NAD dependent epimerase/dehydratase family Acife_1174 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Acife_1175 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Acife_1176 PF16363 GDP-mannose 4,6 dehydratase Acife_1177 PF00483 Nucleotidyl transferase Acife_1178 PF16363 GDP-mannose 4,6 dehydratase Acife_1180 PF02706 Chain length determinant protein Acife_1180 PF13807 G-rich domain on putative tyrosine kinase Acife_1180 PF13614 AAA domain Acife_1181 PF02563 Polysaccharide biosynthesis/export protein Acife_1181 PF10531 SLBB domain Acife_1187 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Acife_1194 PF02397 Bacterial sugar transferase Acife_1203 PF01610 Transposase Acife_1203 PF13542 Helix-turn-helix domain of transposase family ISL3 Acife_1203 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acife_1204 PF04221 RelB antitoxin Acife_1208 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Acife_1209 PF01738 Dienelactone hydrolase family Acife_1210 PF16925 Tetracyclin repressor-like, C-terminal domain Acife_1210 PF00440 Bacterial regulatory proteins, tetR family Acife_1212 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Acife_1212 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Acife_1213 PF06965 Na+/H+ antiporter 1 Acife_1214 PF08264 Anticodon-binding domain of tRNA Acife_1214 PF10458 Valyl tRNA synthetase tRNA binding arm Acife_1214 PF00133 tRNA synthetases class I (I, L, M and V) Acife_1216 PF04364 DNA polymerase III chi subunit, HolC Acife_1217 PF00883 Cytosol aminopeptidase family, catalytic domain Acife_1217 PF02789 Cytosol aminopeptidase family, N-terminal domain Acife_1218 PF03739 Lipopolysaccharide export system permease LptF/LptG Acife_1223 PF01491 Frataxin-like domain Acife_1224 PF16124 RecQ zinc-binding Acife_1224 PF00271 Helicase conserved C-terminal domain Acife_1224 PF00270 DEAD/DEAH box helicase Acife_1224 PF09382 RQC domain Acife_1224 PF00570 HRDC domain Acife_1225 PF00149 Calcineurin-like phosphoesterase Acife_1227 PF00528 Binding-protein-dependent transport system inner membrane component Acife_1228 PF08402 TOBE domain Acife_1228 PF00005 ABC transporter Acife_1229 PF01649 Ribosomal protein S20 Acife_1230 PF00580 UvrD/REP helicase N-terminal domain Acife_1230 PF13361 UvrD-like helicase C-terminal domain Acife_1231 PF01790 Prolipoprotein diacylglyceryl transferase Acife_1232 PF04371 Porphyromonas-type peptidyl-arginine deiminase Acife_1233 PF00849 RNA pseudouridylate synthase Acife_1233 PF01479 S4 domain Acife_1234 PF00293 NUDIX domain Acife_1235 PF00293 NUDIX domain Acife_1237 PF14883 Hypothetical glycosyl hydrolase family 13 Acife_1237 PF01522 Polysaccharide deacetylase Acife_1239 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acife_1239 PF03466 LysR substrate binding domain Acife_1240 PF00092 von Willebrand factor type A domain Acife_1241 PF08406 CbbQ/NirQ/NorQ C-terminal Acife_1241 PF07728 AAA domain (dynein-related subfamily) Acife_1242 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Acife_1242 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Acife_1243 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Acife_1244 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Acife_1244 PF00374 Nickel-dependent hydrogenase Acife_1244 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Acife_1245 PF00361 Proton-conducting membrane transporter Acife_1247 PF00146 NADH dehydrogenase Acife_1248 PF00361 Proton-conducting membrane transporter Acife_1249 PF01381 Helix-turn-helix Acife_1249 PF07883 Cupin domain Acife_1250 PF01926 50S ribosome-binding GTPase Acife_1250 PF06071 Protein of unknown function (DUF933) Acife_1251 PF01195 Peptidyl-tRNA hydrolase Acife_1252 PF14693 Ribosomal protein TL5, C-terminal domain Acife_1252 PF01386 Ribosomal L25p family Acife_1253 PF03717 Penicillin-binding Protein dimerisation domain Acife_1253 PF00905 Penicillin binding protein transpeptidase domain Acife_1256 PF01812 5-formyltetrahydrofolate cyclo-ligase family Acife_1263 PF00582 Universal stress protein family Acife_1264 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Acife_1264 PF03129 Anticodon binding domain Acife_1264 PF04073 Aminoacyl-tRNA editing domain Acife_1267 PF02556 Preprotein translocase subunit SecB Acife_1268 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Acife_1268 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Acife_1270 PF13243 Squalene-hopene cyclase C-terminal domain Acife_1270 PF13249 Squalene-hopene cyclase N-terminal domain Acife_1272 PF01370 NAD dependent epimerase/dehydratase family Acife_1274 PF01938 TRAM domain Acife_1274 PF00919 Uncharacterized protein family UPF0004 Acife_1274 PF04055 Radical SAM superfamily Acife_1275 PF04794 YdjC-like protein Acife_1278 PF04055 Radical SAM superfamily Acife_1278 PF13186 Iron-sulfur cluster-binding domain Acife_1279 PF05494 MlaC protein Acife_1281 PF02686 Glu-tRNAGln amidotransferase C subunit Acife_1282 PF01425 Amidase Acife_1283 PF02934 GatB/GatE catalytic domain Acife_1283 PF02637 GatB domain Acife_1285 PF00270 DEAD/DEAH box helicase Acife_1285 PF00271 Helicase conserved C-terminal domain Acife_1286 PF00072 Response regulator receiver domain Acife_1286 PF00486 Transcriptional regulatory protein, C terminal Acife_1287 PF00989 PAS fold Acife_1287 PF00512 His Kinase A (phospho-acceptor) domain Acife_1287 PF11808 Phosphate regulon sensor protein PhoR Acife_1287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_1288 PF12849 PBP superfamily domain Acife_1289 PF00528 Binding-protein-dependent transport system inner membrane component Acife_1290 PF00528 Binding-protein-dependent transport system inner membrane component Acife_1291 PF00005 ABC transporter Acife_1292 PF01895 PhoU domain Acife_1293 PF02541 Ppx/GppA phosphatase family Acife_1294 PF00534 Glycosyl transferases group 1 Acife_1294 PF13439 Glycosyltransferase Family 4 Acife_1296 PF00318 Ribosomal protein S2 Acife_1297 PF00889 Elongation factor TS Acife_1298 PF00696 Amino acid kinase family Acife_1299 PF01765 Ribosome recycling factor Acife_1300 PF01255 Putative undecaprenyl diphosphate synthase Acife_1302 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Acife_1302 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Acife_1302 PF13288 DXP reductoisomerase C-terminal domain Acife_1303 PF02163 Peptidase family M50 Acife_1303 PF17820 PDZ domain Acife_1304 PF01103 Surface antigen Acife_1304 PF07244 Surface antigen variable number repeat Acife_1306 PF00132 Bacterial transferase hexapeptide (six repeats) Acife_1306 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Acife_1307 PF07977 FabA-like domain Acife_1308 PF00132 Bacterial transferase hexapeptide (six repeats) Acife_1308 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Acife_1309 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Acife_1309 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Acife_1310 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Acife_1311 PF02684 Lipid-A-disaccharide synthetase Acife_1312 PF01351 Ribonuclease HII Acife_1313 PF02811 PHP domain Acife_1313 PF14579 Helix-hairpin-helix motif Acife_1313 PF01336 OB-fold nucleic acid binding domain Acife_1313 PF07733 Bacterial DNA polymerase III alpha NTPase domain Acife_1313 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Acife_1314 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Acife_1315 PF09179 TilS substrate binding domain Acife_1315 PF01171 PP-loop family Acife_1315 PF11734 TilS substrate C-terminal domain Acife_1316 PF01979 Amidohydrolase family Acife_1317 PF01258 Prokaryotic dksA/traR C4-type zinc finger Acife_1318 PF13419 Haloacid dehalogenase-like hydrolase Acife_1319 PF01270 Glycosyl hydrolases family 8 Acife_1322 PF03170 Bacterial cellulose synthase subunit Acife_1323 PF07238 PilZ domain Acife_1323 PF03552 Cellulose synthase Acife_1323 PF00535 Glycosyl transferase family 2 Acife_1324 PF00483 Nucleotidyl transferase Acife_1327 PF06745 KaiC Acife_1328 PF00563 EAL domain Acife_1328 PF00990 Diguanylate cyclase, GGDEF domain Acife_1328 PF03707 Bacterial signalling protein N terminal repeat Acife_1330 PF06745 KaiC Acife_1337 PF00563 EAL domain Acife_1337 PF00990 Diguanylate cyclase, GGDEF domain Acife_1337 PF03707 Bacterial signalling protein N terminal repeat Acife_1338 PF00512 His Kinase A (phospho-acceptor) domain Acife_1338 PF17149 Periplasmic sensor domain found in signal transduction proteins Acife_1338 PF00672 HAMP domain Acife_1338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_1338 PF00072 Response regulator receiver domain Acife_1338 PF01627 Hpt domain Acife_1340 PF08241 Methyltransferase domain Acife_1342 PF01545 Cation efflux family Acife_1343 PF00753 Metallo-beta-lactamase superfamily Acife_1343 PF00581 Rhodanese-like domain Acife_1345 PF07690 Major Facilitator Superfamily Acife_1355 PF17757 UvrB interaction domain Acife_1355 PF12344 Ultra-violet resistance protein B Acife_1355 PF02151 UvrB/uvrC motif Acife_1355 PF04851 Type III restriction enzyme, res subunit Acife_1355 PF00271 Helicase conserved C-terminal domain Acife_1356 PF08240 Alcohol dehydrogenase GroES-like domain Acife_1356 PF00107 Zinc-binding dehydrogenase Acife_1357 PF06418 CTP synthase N-terminus Acife_1357 PF00117 Glutamine amidotransferase class-I Acife_1358 PF00793 DAHP synthetase I family Acife_1359 PF00113 Enolase, C-terminal TIM barrel domain Acife_1359 PF03952 Enolase, N-terminal domain Acife_1360 PF04977 Septum formation initiator Acife_1361 PF08207 Elongation factor P (EF-P) KOW-like domain Acife_1361 PF01132 Elongation factor P (EF-P) OB domain Acife_1361 PF09285 Elongation factor P, C-terminal Acife_1363 PF08459 UvrC Helix-hairpin-helix N-terminal Acife_1363 PF02151 UvrB/uvrC motif Acife_1363 PF01541 GIY-YIG catalytic domain Acife_1364 PF01066 CDP-alcohol phosphatidyltransferase Acife_1366 PF01207 Dihydrouridine synthase (Dus) Acife_1367 PF01022 Bacterial regulatory protein, arsR family Acife_1368 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Acife_1368 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Acife_1369 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Acife_1369 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Acife_1370 PF02222 ATP-grasp domain Acife_1370 PF01370 NAD dependent epimerase/dehydratase family Acife_1371 PF00155 Aminotransferase class I and II Acife_1372 PF00664 ABC transporter transmembrane region Acife_1372 PF00005 ABC transporter Acife_1385 PF10672 S-adenosylmethionine-dependent methyltransferase Acife_1385 PF17785 PUA-like domain Acife_1386 PF01008 Initiation factor 2 subunit family Acife_1387 PF03989 DNA gyrase C-terminal domain, beta-propeller Acife_1387 PF00521 DNA gyrase/topoisomerase IV, subunit A Acife_1388 PF00266 Aminotransferase class-V Acife_1389 PF00800 Prephenate dehydratase Acife_1389 PF01817 Chorismate mutase type II Acife_1389 PF01842 ACT domain Acife_1390 PF00155 Aminotransferase class I and II Acife_1391 PF18152 DAHP synthase ferredoxin-like domain Acife_1391 PF00793 DAHP synthetase I family Acife_1393 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Acife_1394 PF02224 Cytidylate kinase Acife_1395 PF00575 S1 RNA binding domain Acife_1396 PF00216 Bacterial DNA-binding protein Acife_1397 PF18073 Rubredoxin metal binding domain Acife_1398 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Acife_1399 PF00156 Phosphoribosyl transferase domain Acife_1400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Acife_1400 PF05698 Bacterial trigger factor protein (TF) C-terminus Acife_1400 PF05697 Bacterial trigger factor protein (TF) Acife_1401 PF00574 Clp protease Acife_1402 PF07724 AAA domain (Cdc48 subfamily) Acife_1402 PF10431 C-terminal, D2-small domain, of ClpB protein Acife_1402 PF06689 ClpX C4-type zinc finger Acife_1403 PF05362 Lon protease (S16) C-terminal proteolytic domain Acife_1403 PF00004 ATPase family associated with various cellular activities (AAA) Acife_1403 PF02190 ATP-dependent protease La (LON) substrate-binding domain Acife_1404 PF00216 Bacterial DNA-binding protein Acife_1405 PF13145 PPIC-type PPIASE domain Acife_1407 PF01726 LexA DNA binding domain Acife_1407 PF00717 Peptidase S24-like Acife_1409 PF01433 Peptidase family M1 domain Acife_1409 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Acife_1409 PF11940 Domain of unknown function (DUF3458) Ig-like fold Acife_1411 PF01928 CYTH domain Acife_1413 PF13090 Polyphosphate kinase C-terminal domain 2 Acife_1413 PF02503 Polyphosphate kinase middle domain Acife_1413 PF13089 Polyphosphate kinase N-terminal domain Acife_1413 PF17941 Polyphosphate kinase C-terminal domain 1 Acife_1414 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Acife_1414 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Acife_1415 PF00873 AcrB/AcrD/AcrF family Acife_1416 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acife_1419 PF02545 Maf-like protein Acife_1420 PF00311 Phosphoenolpyruvate carboxylase Acife_1421 PF17209 Hfq protein Acife_1422 PF13167 GTP-binding GTPase N-terminal Acife_1422 PF01926 50S ribosome-binding GTPase Acife_1422 PF16360 GTP-binding GTPase Middle Region Acife_1423 PF01145 SPFH domain / Band 7 family Acife_1424 PF01145 SPFH domain / Band 7 family Acife_1425 PF13393 Histidyl-tRNA synthetase Acife_1426 PF00709 Adenylosuccinate synthetase Acife_1428 PF08206 Ribonuclease B OB domain Acife_1428 PF08461 Ribonuclease R winged-helix domain Acife_1428 PF17876 Cold shock domain Acife_1428 PF00773 RNB domain Acife_1429 PF03976 Polyphosphate kinase 2 (PPK2) Acife_1430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Acife_1430 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_1431 PF18146 Damage-inducible protein CinA KH domain Acife_1431 PF00994 Probable molybdopterin binding domain Acife_1431 PF02464 Competence-damaged protein Acife_1432 PF00551 Formyl transferase Acife_1433 PF02769 AIR synthase related protein, C-terminal domain Acife_1433 PF00586 AIR synthase related protein, N-terminal domain Acife_1434 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Acife_1434 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Acife_1435 PF01066 CDP-alcohol phosphatidyltransferase Acife_1436 PF11638 DnaA N-terminal domain Acife_1436 PF00308 Bacterial dnaA protein Acife_1436 PF08299 Bacterial dnaA protein helix-turn-helix Acife_1437 PF03631 Virulence factor BrkB Acife_1439 PF01783 Ribosomal L32p protein family Acife_1440 PF02504 Fatty acid synthesis protein Acife_1441 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Acife_1441 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Acife_1442 PF00698 Acyl transferase domain Acife_1444 PF00550 Phosphopantetheine attachment site Acife_1445 PF02801 Beta-ketoacyl synthase, C-terminal domain Acife_1445 PF00109 Beta-ketoacyl synthase, N-terminal domain Acife_1447 PF02618 YceG-like family Acife_1448 PF02223 Thymidylate kinase Acife_1449 PF09115 DNA polymerase III, delta subunit, C terminal Acife_1457 PF02665 Nitrate reductase gamma subunit Acife_1458 PF02613 Nitrate reductase delta subunit Acife_1459 PF13247 4Fe-4S dicluster domain Acife_1459 PF14711 Respiratory nitrate reductase beta C-terminal Acife_1460 PF14710 Respiratory nitrate reductase alpha N-terminal Acife_1460 PF01568 Molydopterin dinucleotide binding domain Acife_1460 PF00384 Molybdopterin oxidoreductase Acife_1461 PF07690 Major Facilitator Superfamily Acife_1466 PF03595 Voltage-dependent anion channel Acife_1471 PF03472 Autoinducer binding domain Acife_1471 PF00196 Bacterial regulatory proteins, luxR family Acife_1474 PF00291 Pyridoxal-phosphate dependent enzyme Acife_1477 PF00892 EamA-like transporter family Acife_1478 PF01022 Bacterial regulatory protein, arsR family Acife_1479 PF13280 WYL domain Acife_1479 PF08279 HTH domain Acife_1481 PF01878 EVE domain Acife_1485 PF00155 Aminotransferase class I and II Acife_1486 PF03358 NADPH-dependent FMN reductase Acife_1491 PF01965 DJ-1/PfpI family Acife_1492 PF02567 Phenazine biosynthesis-like protein Acife_1494 PF01252 Signal peptidase (SPase) II Acife_1496 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Acife_1499 PF13657 HipA N-terminal domain Acife_1499 PF07804 HipA-like C-terminal domain Acife_1501 PF12169 DNA polymerase III subunits gamma and tau domain III Acife_1501 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Acife_1501 PF12170 DNA polymerase III tau subunit V interacting with alpha Acife_1502 PF02575 YbaB/EbfC DNA-binding family Acife_1503 PF02132 RecR protein Acife_1503 PF13662 Toprim domain Acife_1504 PF00909 Ammonium Transporter Family Acife_1505 PF03853 YjeF-related protein N-terminus Acife_1505 PF01256 Carbohydrate kinase Acife_1506 PF00202 Aminotransferase class-III Acife_1508 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Acife_1509 PF08676 MutL C terminal dimerisation domain Acife_1509 PF01119 DNA mismatch repair protein, C-terminal domain Acife_1511 PF00334 Nucleoside diphosphate kinase Acife_1512 PF04055 Radical SAM superfamily Acife_1514 PF13464 Domain of unknown function (DUF4115) Acife_1515 PF04551 GcpE protein Acife_1516 PF13393 Histidyl-tRNA synthetase Acife_1516 PF03129 Anticodon binding domain Acife_1518 PF13360 PQQ-like domain Acife_1519 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Acife_1519 PF01926 50S ribosome-binding GTPase Acife_1523 PF12849 PBP superfamily domain Acife_1524 PF00528 Binding-protein-dependent transport system inner membrane component Acife_1525 PF00528 Binding-protein-dependent transport system inner membrane component Acife_1529 PF00230 Major intrinsic protein Acife_1530 PF02374 Anion-transporting ATPase Acife_1531 PF06953 Arsenical resistance operon trans-acting repressor ArsD Acife_1532 PF01451 Low molecular weight phosphotyrosine protein phosphatase Acife_1541 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Acife_1546 PF00171 Aldehyde dehydrogenase family Acife_1546 PF14850 DNA-binding domain of Proline dehydrogenase Acife_1546 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Acife_1546 PF01619 Proline dehydrogenase Acife_1549 PF05567 Neisseria PilC beta-propeller domain Acife_1553 PF00482 Type II secretion system (T2SS), protein F Acife_1557 PF07963 Prokaryotic N-terminal methylation motif Acife_1557 PF00114 Pilin (bacterial filament) Acife_1563 PF01610 Transposase Acife_1563 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acife_1563 PF13542 Helix-turn-helix domain of transposase family ISL3 Acife_1568 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system Acife_1572 PF00183 Hsp90 protein Acife_1572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_1574 PF01381 Helix-turn-helix Acife_1578 PF02661 Fic/DOC family Acife_1578 PF13784 Fic/DOC family N-terminal Acife_1579 PF03707 Bacterial signalling protein N terminal repeat Acife_1579 PF00563 EAL domain Acife_1579 PF00990 Diguanylate cyclase, GGDEF domain Acife_1586 PF00535 Glycosyl transferase family 2 Acife_1586 PF03552 Cellulose synthase Acife_1586 PF07238 PilZ domain Acife_1586 PF03170 Bacterial cellulose synthase subunit Acife_1587 PF01270 Glycosyl hydrolases family 8 Acife_1588 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) Acife_1588 PF13181 Tetratricopeptide repeat Acife_1589 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) Acife_1590 PF00378 Enoyl-CoA hydratase/isomerase Acife_1591 PF00512 His Kinase A (phospho-acceptor) domain Acife_1591 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_1591 PF00072 Response regulator receiver domain Acife_1591 PF01627 Hpt domain Acife_1592 PF00072 Response regulator receiver domain Acife_1594 PF07238 PilZ domain Acife_1594 PF00535 Glycosyl transferase family 2 Acife_1595 PF03170 Bacterial cellulose synthase subunit Acife_1598 PF01270 Glycosyl hydrolases family 8 Acife_1599 PF03707 Bacterial signalling protein N terminal repeat Acife_1599 PF00563 EAL domain Acife_1599 PF00990 Diguanylate cyclase, GGDEF domain Acife_1602 PF14489 QueF-like protein Acife_1603 PF06470 SMC proteins Flexible Hinge Domain Acife_1603 PF02463 RecF/RecN/SMC N terminal domain Acife_1605 PF03120 NAD-dependent DNA ligase OB-fold domain Acife_1605 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Acife_1605 PF12826 Helix-hairpin-helix motif Acife_1605 PF01653 NAD-dependent DNA ligase adenylation domain Acife_1605 PF00533 BRCA1 C Terminus (BRCT) domain Acife_1606 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Acife_1606 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Acife_1610 PF00578 AhpC/TSA family Acife_1611 PF13638 PIN domain Acife_1611 PF02562 PhoH-like protein Acife_1612 PF17810 Arginine decarboxylase helical bundle domain Acife_1612 PF17944 Arginine decarboxylase C-terminal helical extension Acife_1612 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Acife_1614 PF01557 Fumarylacetoacetate (FAA) hydrolase family Acife_1619 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_1620 PF00766 Electron transfer flavoprotein FAD-binding domain Acife_1620 PF01012 Electron transfer flavoprotein domain Acife_1621 PF01012 Electron transfer flavoprotein domain Acife_1622 PF01593 Flavin containing amine oxidoreductase Acife_1627 PF00355 Rieske [2Fe-2S] domain Acife_1630 PF00581 Rhodanese-like domain Acife_1632 PF03206 Nitrogen fixation protein NifW Acife_1633 PF00132 Bacterial transferase hexapeptide (six repeats) Acife_1634 PF00682 HMGL-like Acife_1635 PF00266 Aminotransferase class-V Acife_1636 PF04324 BFD-like [2Fe-2S] binding domain Acife_1636 PF01106 NifU-like domain Acife_1636 PF01592 NifU-like N terminal domain Acife_1637 PF01521 Iron-sulphur cluster biosynthesis Acife_1639 PF04891 NifQ Acife_1640 PF12838 4Fe-4S dicluster domain Acife_1641 PF05082 Rop-like Acife_1642 PF03270 Protein of unknown function, DUF269 Acife_1643 PF02579 Dinitrogenase iron-molybdenum cofactor Acife_1644 PF00148 Nitrogenase component 1 type Oxidoreductase Acife_1645 PF00148 Nitrogenase component 1 type Oxidoreductase Acife_1645 PF04324 BFD-like [2Fe-2S] binding domain Acife_1647 PF00111 2Fe-2S iron-sulfur cluster binding domain Acife_1648 PF00148 Nitrogenase component 1 type Oxidoreductase Acife_1648 PF11844 Domain of unknown function (DUF3364) Acife_1649 PF00148 Nitrogenase component 1 type Oxidoreductase Acife_1650 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Acife_1652 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) Acife_1653 PF03747 ADP-ribosylglycohydrolase Acife_1654 PF01590 GAF domain Acife_1654 PF02954 Bacterial regulatory protein, Fis family Acife_1654 PF00158 Sigma-54 interaction domain Acife_1655 PF04055 Radical SAM superfamily Acife_1655 PF02579 Dinitrogenase iron-molybdenum cofactor Acife_1656 PF00037 4Fe-4S binding domain Acife_1657 PF01521 Iron-sulphur cluster biosynthesis Acife_1660 PF05484 LRV protein FeS4 cluster Acife_1660 PF01816 Leucine rich repeat variant Acife_1661 PF04319 NifZ domain Acife_1663 PF00266 Aminotransferase class-V Acife_1664 PF06988 NifT/FixU protein Acife_1666 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Acife_1667 PF00111 2Fe-2S iron-sulfur cluster binding domain Acife_1671 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Acife_1671 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Acife_1672 PF00171 Aldehyde dehydrogenase family Acife_1676 PF00294 pfkB family carbohydrate kinase Acife_1677 PF00534 Glycosyl transferases group 1 Acife_1677 PF00862 Sucrose synthase Acife_1678 PF00534 Glycosyl transferases group 1 Acife_1678 PF00862 Sucrose synthase Acife_1681 PF12833 Helix-turn-helix domain Acife_1681 PF02805 Metal binding domain of Ada Acife_1681 PF00730 HhH-GPD superfamily base excision DNA repair protein Acife_1681 PF06029 AlkA N-terminal domain Acife_1682 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Acife_1682 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Acife_1684 PF01850 PIN domain Acife_1685 PF01037 Lrp/AsnC ligand binding domain Acife_1686 PF08502 LeuA allosteric (dimerisation) domain Acife_1686 PF00682 HMGL-like Acife_1690 PF00690 Cation transporter/ATPase, N-terminus Acife_1690 PF00689 Cation transporting ATPase, C-terminus Acife_1691 PF00149 Calcineurin-like phosphoesterase Acife_1692 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Acife_1693 PF13520 Amino acid permease Acife_1695 PF02601 Exonuclease VII, large subunit Acife_1695 PF13742 OB-fold nucleic acid binding domain Acife_1696 PF00085 Thioredoxin Acife_1698 PF07690 Major Facilitator Superfamily Acife_1699 PF02609 Exonuclease VII small subunit Acife_1700 PF00348 Polyprenyl synthetase Acife_1701 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Acife_1701 PF02780 Transketolase, C-terminal domain Acife_1701 PF02779 Transketolase, pyrimidine binding domain Acife_1702 PF02649 Type I GTP cyclohydrolase folE2 Acife_1703 PF01264 Chorismate synthase Acife_1705 PF17871 AAA lid domain Acife_1705 PF10431 C-terminal, D2-small domain, of ClpB protein Acife_1705 PF07724 AAA domain (Cdc48 subfamily) Acife_1705 PF00004 ATPase family associated with various cellular activities (AAA) Acife_1705 PF02861 Clp amino terminal domain, pathogenicity island component Acife_1706 PF13439 Glycosyltransferase Family 4 Acife_1706 PF00534 Glycosyl transferases group 1 Acife_1707 PF00501 AMP-binding enzyme Acife_1707 PF13193 AMP-binding enzyme C-terminal domain Acife_1707 PF16177 Acetyl-coenzyme A synthetase N-terminus Acife_1708 PF02080 TrkA-C domain Acife_1708 PF00999 Sodium/hydrogen exchanger family Acife_1708 PF02254 TrkA-N domain Acife_1709 PF01370 NAD dependent epimerase/dehydratase family Acife_1710 PF01370 NAD dependent epimerase/dehydratase family Acife_1718 PF00127 Copper binding proteins, plastocyanin/azurin family Acife_1720 PF11799 impB/mucB/samB family C-terminal domain Acife_1720 PF00817 impB/mucB/samB family Acife_1722 PF01850 PIN domain Acife_1728 PF03073 TspO/MBR family Acife_1732 PF01569 PAP2 superfamily Acife_1741 PF01266 FAD dependent oxidoreductase Acife_1742 PF04357 TamB, inner membrane protein subunit of TAM complex Acife_1743 PF17243 POTRA domain TamA domain 1 Acife_1743 PF07244 Surface antigen variable number repeat Acife_1743 PF01103 Surface antigen Acife_1750 PF07690 Major Facilitator Superfamily Acife_1751 PF01430 Hsp33 protein Acife_1752 PF01171 PP-loop family Acife_1753 PF01467 Cytidylyltransferase-like Acife_1753 PF00294 pfkB family carbohydrate kinase Acife_1754 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Acife_1754 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Acife_1754 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Acife_1755 PF01648 4'-phosphopantetheinyl transferase superfamily Acife_1756 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Acife_1757 PF02565 Recombination protein O C terminal Acife_1757 PF11967 Recombination protein O N terminal Acife_1758 PF01926 50S ribosome-binding GTPase Acife_1758 PF07650 KH domain Acife_1759 PF14622 Ribonuclease-III-like Acife_1759 PF00035 Double-stranded RNA binding motif Acife_1761 PF10502 Signal peptidase, peptidase S26 Acife_1762 PF00679 Elongation factor G C-terminus Acife_1762 PF00009 Elongation factor Tu GTP binding domain Acife_1762 PF03144 Elongation factor Tu domain 2 Acife_1762 PF06421 GTP-binding protein LepA C-terminus Acife_1763 PF13180 PDZ domain Acife_1765 PF04542 Sigma-70 region 2 Acife_1765 PF08281 Sigma-70, region 4 Acife_1766 PF02910 Fumarate reductase flavoprotein C-term Acife_1766 PF00890 FAD binding domain Acife_1768 PF01571 Aminomethyltransferase folate-binding domain Acife_1771 PF12706 Beta-lactamase superfamily domain Acife_1771 PF03099 Biotin/lipoate A/B protein ligase family Acife_1772 PF01026 TatD related DNase Acife_1773 PF00588 SpoU rRNA Methylase family Acife_1773 PF08032 RNA 2'-O ribose methyltransferase substrate binding Acife_1776 PF01594 AI-2E family transporter Acife_1777 PF02811 PHP domain Acife_1779 PF10417 C-terminal domain of 1-Cys peroxiredoxin Acife_1779 PF00578 AhpC/TSA family Acife_1780 PF00037 4Fe-4S binding domain Acife_1780 PF11953 Domain of unknown function (DUF3470) Acife_1781 PF00005 ABC transporter Acife_1781 PF00664 ABC transporter transmembrane region Acife_1782 PF01841 Transglutaminase-like superfamily Acife_1782 PF11992 Domain of unknown function (DUF3488) Acife_1782 PF13559 Domain of unknown function (DUF4129) Acife_1784 PF17863 AAA lid domain Acife_1784 PF07726 ATPase family associated with various cellular activities (AAA) Acife_1785 PF02347 Glycine cleavage system P-protein Acife_1786 PF02347 Glycine cleavage system P-protein Acife_1787 PF01597 Glycine cleavage H-protein Acife_1788 PF08669 Glycine cleavage T-protein C-terminal barrel domain Acife_1788 PF01571 Aminomethyltransferase folate-binding domain Acife_1789 PF04461 Protein of unknown function (DUF520) Acife_1790 PF02391 MoaE protein Acife_1791 PF02597 ThiS family Acife_1792 PF01343 Peptidase family S49 Acife_1792 PF08496 Peptidase family S49 N-terminal Acife_1794 PF04241 Protein of unknown function (DUF423) Acife_1797 PF00535 Glycosyl transferase family 2 Acife_1799 PF04349 Periplasmic glucan biosynthesis protein, MdoG Acife_1801 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_1801 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Acife_1803 PF02230 Phospholipase/Carboxylesterase Acife_1804 PF02954 Bacterial regulatory protein, Fis family Acife_1804 PF00072 Response regulator receiver domain Acife_1804 PF00158 Sigma-54 interaction domain Acife_1805 PF01964 Radical SAM ThiC family Acife_1805 PF13667 ThiC-associated domain Acife_1812 PF12848 ABC transporter Acife_1812 PF00005 ABC transporter Acife_1814 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Acife_1814 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Acife_1814 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Acife_1814 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acife_1815 PF00176 SNF2 family N-terminal domain Acife_1815 PF00271 Helicase conserved C-terminal domain Acife_1815 PF12419 SNF2 Helicase protein Acife_1819 PF00175 Oxidoreductase NAD-binding domain Acife_1819 PF00042 Globin Acife_1819 PF00970 Oxidoreductase FAD-binding domain Acife_1823 PF00586 AIR synthase related protein, N-terminal domain Acife_1823 PF02769 AIR synthase related protein, C-terminal domain Acife_1824 PF01924 Hydrogenase formation hypA family Acife_1825 PF01455 HupF/HypC family Acife_1826 PF17788 HypF Kae1-like domain Acife_1826 PF01300 Telomere recombination Acife_1826 PF07503 HypF finger Acife_1826 PF00708 Acylphosphatase Acife_1827 PF02492 CobW/HypB/UreG, nucleotide-binding domain Acife_1828 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Acife_1830 PF02272 DHHA1 domain Acife_1830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Acife_1830 PF01411 tRNA synthetases class II (A) Acife_1831 PF02631 RecX family Acife_1832 PF00154 recA bacterial DNA recombination protein Acife_1833 PF00994 Probable molybdopterin binding domain Acife_1833 PF18146 Damage-inducible protein CinA KH domain Acife_1833 PF02464 Competence-damaged protein Acife_1834 PF04608 Phosphatidylglycerophosphatase A Acife_1835 PF00586 AIR synthase related protein, N-terminal domain Acife_1835 PF02769 AIR synthase related protein, C-terminal domain Acife_1836 PF00749 tRNA synthetases class I (E and Q), catalytic domain Acife_1837 PF17746 SfsA N-terminal OB domain Acife_1837 PF03749 Sugar fermentation stimulation protein RE domain Acife_1838 PF00557 Metallopeptidase family M24 Acife_1839 PF01842 ACT domain Acife_1839 PF08335 GlnD PII-uridylyltransferase Acife_1839 PF01966 HD domain Acife_1839 PF01909 Nucleotidyltransferase domain Acife_1840 PF04356 Protein of unknown function (DUF489) Acife_1849 PF01578 Cytochrome C assembly protein Acife_1850 PF05140 ResB-like family Acife_1857 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_1857 PF00512 His Kinase A (phospho-acceptor) domain Acife_1858 PF00072 Response regulator receiver domain Acife_1861 PF07690 Major Facilitator Superfamily Acife_1862 PF01040 UbiA prenyltransferase family Acife_1864 PF00127 Copper binding proteins, plastocyanin/azurin family Acife_1868 PF00115 Cytochrome C and Quinol oxidase polypeptide I Acife_1869 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Acife_1871 PF00034 Cytochrome c Acife_1873 PF04241 Protein of unknown function (DUF423) Acife_1875 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Acife_1876 PF00361 Proton-conducting membrane transporter Acife_1876 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Acife_1880 PF01979 Amidohydrolase family Acife_1881 PF00920 Dehydratase family Acife_1883 PF03729 Short repeat of unknown function (DUF308) Acife_1886 PF02627 Carboxymuconolactone decarboxylase family Acife_1887 PF01047 MarR family Acife_1889 PF00589 Phage integrase family Acife_1890 PF17762 HTH domain found in ParB protein Acife_1890 PF02195 ParB-like nuclease domain Acife_1891 PF13614 AAA domain Acife_1904 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Acife_1907 PF04956 TrbC/VIRB2 family Acife_1909 PF00437 Type II/IV secretion system protein Acife_1912 PF01131 DNA topoisomerase Acife_1912 PF01751 Toprim domain Acife_1915 PF00114 Pilin (bacterial filament) Acife_1915 PF07963 Prokaryotic N-terminal methylation motif Acife_1919 PF00476 DNA polymerase family A Acife_1919 PF01612 3'-5' exonuclease Acife_1919 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Acife_1919 PF01367 5'-3' exonuclease, C-terminal SAM fold Acife_1930 PF00795 Carbon-nitrogen hydrolase Acife_1930 PF02540 NAD synthase Acife_1938 PF08401 Domain of unknown function (DUF1738) Acife_1938 PF18818 Metallopeptidase superfamily domain Acife_1942 PF01464 Transglycosylase SLT domain Acife_1948 PF08774 VRR-NUC domain Acife_1948 PF04851 Type III restriction enzyme, res subunit Acife_1949 PF18273 Type III R-M EcoP15I C-terminal domain Acife_1949 PF01555 DNA methylase Acife_1953 PF00271 Helicase conserved C-terminal domain Acife_1953 PF00176 SNF2 family N-terminal domain Acife_1954 PF01926 50S ribosome-binding GTPase Acife_1956 PF00216 Bacterial DNA-binding protein Acife_1961 PF00216 Bacterial DNA-binding protein Acife_1962 PF00216 Bacterial DNA-binding protein Acife_1964 PF14850 DNA-binding domain of Proline dehydrogenase Acife_1964 PF01619 Proline dehydrogenase Acife_1964 PF00171 Aldehyde dehydrogenase family Acife_1964 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Acife_1968 PF07963 Prokaryotic N-terminal methylation motif Acife_1968 PF00114 Pilin (bacterial filament) Acife_1969 PF00482 Type II secretion system (T2SS), protein F Acife_1971 PF12323 Helix-turn-helix domain Acife_1971 PF01385 Probable transposase Acife_1971 PF07282 Putative transposase DNA-binding domain Acife_1976 PF07963 Prokaryotic N-terminal methylation motif Acife_1976 PF00114 Pilin (bacterial filament) Acife_1979 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acife_1979 PF01610 Transposase Acife_1979 PF13542 Helix-turn-helix domain of transposase family ISL3 Acife_1981 PF13007 Transposase C of IS166 homeodomain Acife_1981 PF13005 zinc-finger binding domain of transposase IS66 Acife_1981 PF03050 Transposase IS66 family Acife_1981 PF13817 IS66 C-terminal element Acife_1990 PF02534 Type IV secretory system Conjugative DNA transfer Acife_1993 PF02195 ParB-like nuclease domain Acife_1995 PF01507 Phosphoadenosine phosphosulfate reductase family Acife_1995 PF11922 Domain of unknown function (DUF3440) Acife_1998 PF00877 NlpC/P60 family Acife_2000 PF01979 Amidohydrolase family Acife_2002 PF13419 Haloacid dehalogenase-like hydrolase Acife_2004 PF00155 Aminotransferase class I and II Acife_2005 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Acife_2005 PF14602 Hexapeptide repeat of succinyl-transferase Acife_2005 PF00132 Bacterial transferase hexapeptide (six repeats) Acife_2006 PF01546 Peptidase family M20/M25/M40 Acife_2006 PF07687 Peptidase dimerisation domain Acife_2007 PF03330 Lytic transglycolase Acife_2007 PF05036 Sporulation related domain Acife_2009 PF00391 PEP-utilising enzyme, mobile domain Acife_2009 PF02896 PEP-utilising enzyme, TIM barrel domain Acife_2009 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Acife_2010 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Acife_2010 PF01676 Metalloenzyme superfamily Acife_2011 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Acife_2011 PF02817 e3 binding domain Acife_2011 PF00364 Biotin-requiring enzyme Acife_2012 PF00871 Acetokinase family Acife_2013 PF00083 Sugar (and other) transporter Acife_2014 PF01515 Phosphate acetyl/butaryl transferase Acife_2015 PF00294 pfkB family carbohydrate kinase Acife_2017 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Acife_2017 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_2019 PF00224 Pyruvate kinase, barrel domain Acife_2019 PF02887 Pyruvate kinase, alpha/beta domain Acife_2019 PF00391 PEP-utilising enzyme, mobile domain Acife_2020 PF11897 Protein of unknown function (DUF3417) Acife_2020 PF00343 Carbohydrate phosphorylase Acife_2022 PF05139 Erythromycin esterase Acife_2022 PF00156 Phosphoribosyl transferase domain Acife_2024 PF01738 Dienelactone hydrolase family Acife_2024 PF00156 Phosphoribosyl transferase domain Acife_2027 PF01479 S4 domain Acife_2027 PF00849 RNA pseudouridylate synthase Acife_2028 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_2029 PF04079 Segregation and condensation complex subunit ScpB Acife_2030 PF02616 Segregation and condensation protein ScpA Acife_2031 PF00579 tRNA synthetases class I (W and Y) Acife_2032 PF02163 Peptidase family M50 Acife_2033 PF01300 Telomere recombination Acife_2037 PF12794 Mechanosensitive ion channel inner membrane domain 1 Acife_2037 PF12795 Mechanosensitive ion channel porin domain Acife_2037 PF00924 Mechanosensitive ion channel Acife_2038 PF00696 Amino acid kinase family Acife_2038 PF01472 PUA domain Acife_2039 PF02540 NAD synthase Acife_2039 PF00958 GMP synthase C terminal domain Acife_2039 PF00117 Glutamine amidotransferase class-I Acife_2040 PF00478 IMP dehydrogenase / GMP reductase domain Acife_2040 PF00571 CBS domain Acife_2041 PF00535 Glycosyl transferase family 2 Acife_2042 PF12627 Probable RNA and SrmB- binding site of polymerase A Acife_2042 PF01743 Poly A polymerase head domain Acife_2042 PF12626 Polymerase A arginine-rich C-terminus Acife_2043 PF12627 Probable RNA and SrmB- binding site of polymerase A Acife_2043 PF01743 Poly A polymerase head domain Acife_2043 PF01966 HD domain Acife_2044 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Acife_2045 PF01712 Deoxynucleoside kinase Acife_2046 PF02548 Ketopantoate hydroxymethyltransferase Acife_2047 PF02569 Pantoate-beta-alanine ligase Acife_2048 PF01565 FAD binding domain Acife_2048 PF02913 FAD linked oxidases, C-terminal domain Acife_2050 PF00488 MutS domain V Acife_2050 PF01713 Smr domain Acife_2053 PF01027 Inhibitor of apoptosis-promoting Bax1 Acife_2054 PF00488 MutS domain V Acife_2054 PF05188 MutS domain II Acife_2054 PF05190 MutS family domain IV Acife_2054 PF05192 MutS domain III Acife_2054 PF01624 MutS domain I Acife_2062 PF03466 LysR substrate binding domain Acife_2062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acife_2063 PF07690 Major Facilitator Superfamily Acife_2064 PF02321 Outer membrane efflux protein Acife_2065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acife_2065 PF00529 HlyD membrane-fusion protein of T1SS Acife_2066 PF00042 Globin Acife_2066 PF00970 Oxidoreductase FAD-binding domain Acife_2066 PF00175 Oxidoreductase NAD-binding domain Acife_2067 PF00970 Oxidoreductase FAD-binding domain Acife_2067 PF00111 2Fe-2S iron-sulfur cluster binding domain Acife_2067 PF00175 Oxidoreductase NAD-binding domain Acife_2070 PF01597 Glycine cleavage H-protein Acife_2071 PF04343 Protein of unknown function, DUF488 Acife_2072 PF13545 Crp-like helix-turn-helix domain Acife_2072 PF00027 Cyclic nucleotide-binding domain Acife_2073 PF00005 ABC transporter Acife_2074 PF07690 Major Facilitator Superfamily Acife_2076 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_2076 PF18267 Rubredoxin NAD+ reductase C-terminal domain Acife_2076 PF04324 BFD-like [2Fe-2S] binding domain Acife_2076 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Acife_2076 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Acife_2077 PF00355 Rieske [2Fe-2S] domain Acife_2078 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Acife_2078 PF00384 Molybdopterin oxidoreductase Acife_2078 PF01568 Molydopterin dinucleotide binding domain Acife_2079 PF02885 Glycosyl transferase family, helical bundle domain Acife_2080 PF10414 Sirohaem synthase dimerisation region Acife_2080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Acife_2082 PF08376 Nitrate and nitrite sensing Acife_2082 PF03861 ANTAR domain Acife_2087 PF13091 PLD-like domain Acife_2087 PF13396 Phospholipase_D-nuclease N-terminal Acife_2088 PF00563 EAL domain Acife_2088 PF00990 Diguanylate cyclase, GGDEF domain Acife_2088 PF03707 Bacterial signalling protein N terminal repeat Acife_2089 PF06745 KaiC Acife_2095 PF00230 Major intrinsic protein Acife_2099 PF01255 Putative undecaprenyl diphosphate synthase Acife_2118 PF00654 Voltage gated chloride channel Acife_2119 PF01381 Helix-turn-helix Acife_2121 PF02678 Pirin Acife_2121 PF17954 Quercetinase C-terminal cupin domain Acife_2122 PF01464 Transglycosylase SLT domain Acife_2124 PF00521 DNA gyrase/topoisomerase IV, subunit A Acife_2125 PF01751 Toprim domain Acife_2125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_2125 PF00986 DNA gyrase B subunit, carboxyl terminus Acife_2125 PF00204 DNA gyrase B Acife_2127 PF00873 AcrB/AcrD/AcrF family Acife_2130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_2130 PF08521 Two-component sensor kinase N-terminal Acife_2130 PF00512 His Kinase A (phospho-acceptor) domain Acife_2131 PF00486 Transcriptional regulatory protein, C terminal Acife_2131 PF00072 Response regulator receiver domain Acife_2136 PF00072 Response regulator receiver domain Acife_2136 PF00486 Transcriptional regulatory protein, C terminal Acife_2137 PF00672 HAMP domain Acife_2137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_2137 PF00512 His Kinase A (phospho-acceptor) domain Acife_2140 PF00873 AcrB/AcrD/AcrF family Acife_2146 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acife_2147 PF00873 AcrB/AcrD/AcrF family Acife_2148 PF00224 Pyruvate kinase, barrel domain Acife_2148 PF02887 Pyruvate kinase, alpha/beta domain Acife_2148 PF02887 Pyruvate kinase, alpha/beta domain Acife_2148 PF00224 Pyruvate kinase, barrel domain Acife_2149 PF01066 CDP-alcohol phosphatidyltransferase Acife_2150 PF02666 Phosphatidylserine decarboxylase Acife_2151 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Acife_2151 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Acife_2152 PF10369 Small subunit of acetolactate synthase Acife_2153 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Acife_2153 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Acife_2153 PF00205 Thiamine pyrophosphate enzyme, central domain Acife_2154 PF00488 MutS domain V Acife_2154 PF01713 Smr domain Acife_2156 PF01894 Uncharacterised protein family UPF0047 Acife_2157 PF14437 MafB19-like deaminase Acife_2162 PF03958 Bacterial type II/III secretion system short domain Acife_2162 PF07660 Secretin and TonB N terminus short domain Acife_2162 PF00263 Bacterial type II and III secretion system protein Acife_2162 PF11741 AMIN domain Acife_2163 PF01202 Shikimate kinase Acife_2164 PF01761 3-dehydroquinate synthase Acife_2165 PF02511 Thymidylate synthase complementing protein Acife_2166 PF13286 Phosphohydrolase-associated domain Acife_2166 PF01966 HD domain Acife_2167 PF01645 Conserved region in glutamate synthase Acife_2167 PF04898 Glutamate synthase central domain Acife_2167 PF00310 Glutamine amidotransferases class-II Acife_2167 PF01493 GXGXG motif Acife_2168 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Acife_2168 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_2169 PF01208 Uroporphyrinogen decarboxylase (URO-D) Acife_2170 PF01553 Acyltransferase Acife_2175 PF00291 Pyridoxal-phosphate dependent enzyme Acife_2175 PF00585 C-terminal regulatory domain of Threonine dehydratase Acife_2176 PF01266 FAD dependent oxidoreductase Acife_2181 PF01555 DNA methylase Acife_2185 PF02355 Protein export membrane protein Acife_2185 PF07549 SecD/SecF GG Motif Acife_2186 PF07549 SecD/SecF GG Motif Acife_2186 PF02355 Protein export membrane protein Acife_2186 PF13721 SecD export protein N-terminal TM region Acife_2187 PF02699 Preprotein translocase subunit Acife_2188 PF01702 Queuine tRNA-ribosyltransferase Acife_2189 PF02547 Queuosine biosynthesis protein Acife_2190 PF01595 Cyclin M transmembrane N-terminal domain Acife_2190 PF00571 CBS domain Acife_2190 PF03471 Transporter associated domain Acife_2192 PF01053 Cys/Met metabolism PLP-dependent enzyme Acife_2193 PF00156 Phosphoribosyl transferase domain Acife_2193 PF13537 Glutamine amidotransferase domain Acife_2195 PF02875 Mur ligase family, glutamate ligase domain Acife_2195 PF08245 Mur ligase middle domain Acife_2196 PF17848 Acetyl-coA carboxylase zinc finger domain Acife_2196 PF01039 Carboxyl transferase domain Acife_2197 PF00290 Tryptophan synthase alpha chain Acife_2198 PF00291 Pyridoxal-phosphate dependent enzyme Acife_2199 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Acife_2200 PF01416 tRNA pseudouridine synthase Acife_2202 PF01118 Semialdehyde dehydrogenase, NAD binding domain Acife_2202 PF02774 Semialdehyde dehydrogenase, dimerisation domain Acife_2203 PF00180 Isocitrate/isopropylmalate dehydrogenase Acife_2205 PF12804 MobA-like NTP transferase domain Acife_2206 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Acife_2207 PF03453 MoeA N-terminal region (domain I and II) Acife_2207 PF03454 MoeA C-terminal region (domain IV) Acife_2207 PF00994 Probable molybdopterin binding domain Acife_2208 PF13091 PLD-like domain Acife_2209 PF00753 Metallo-beta-lactamase superfamily Acife_2211 PF01871 AMMECR1 Acife_2212 PF01875 Memo-like protein Acife_2213 PF02040 Arsenical pump membrane protein Acife_2217 PF01594 AI-2E family transporter Acife_2220 PF00270 DEAD/DEAH box helicase Acife_2220 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Acife_2220 PF17191 RecG wedge domain Acife_2222 PF01042 Endoribonuclease L-PSP Acife_2223 PF02824 TGS domain Acife_2223 PF04607 Region found in RelA / SpoT proteins Acife_2223 PF13291 ACT domain Acife_2224 PF01192 RNA polymerase Rpb6 Acife_2225 PF00625 Guanylate kinase Acife_2226 PF08340 Domain of unknown function (DUF1732) Acife_2226 PF03755 YicC-like family, N-terminal region Acife_2230 PF08406 CbbQ/NirQ/NorQ C-terminal Acife_2230 PF07728 AAA domain (dynein-related subfamily) Acife_2231 PF00101 Ribulose bisphosphate carboxylase, small chain Acife_2232 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Acife_2232 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Acife_2235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Acife_2236 PF00005 ABC transporter Acife_2239 PF00216 Bacterial DNA-binding protein Acife_2246 PF01850 PIN domain Acife_2250 PF04471 Restriction endonuclease Acife_2250 PF14338 Mrr N-terminal domain Acife_2252 PF02384 N-6 DNA Methylase Acife_2252 PF12161 HsdM N-terminal domain Acife_2257 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Acife_2258 PF18766 SWI2/SNF2 ATPase Acife_2258 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Acife_2258 PF11867 Domain of unknown function (DUF3387) Acife_2262 PF00425 chorismate binding enzyme Acife_2262 PF04715 Anthranilate synthase component I, N terminal region Acife_2263 PF02321 Outer membrane efflux protein Acife_2264 PF03023 Lipid II flippase MurJ Acife_2266 PF01687 Riboflavin kinase Acife_2266 PF06574 FAD synthetase Acife_2267 PF08264 Anticodon-binding domain of tRNA Acife_2267 PF06827 Zinc finger found in FPG and IleRS Acife_2267 PF00133 tRNA synthetases class I (I, L, M and V) Acife_2268 PF01252 Signal peptidase (SPase) II Acife_2270 PF00106 short chain dehydrogenase Acife_2272 PF00005 ABC transporter Acife_2272 PF06472 ABC transporter transmembrane region 2 Acife_2274 PF00795 Carbon-nitrogen hydrolase Acife_2276 PF03710 Glutamate-ammonia ligase adenylyltransferase Acife_2276 PF08335 GlnD PII-uridylyltransferase Acife_2277 PF01063 Amino-transferase class IV Acife_2279 PF11412 Disulphide bond corrector protein DsbC Acife_2279 PF02683 Cytochrome C biogenesis protein transmembrane region Acife_2282 PF00166 Chaperonin 10 Kd subunit Acife_2283 PF00118 TCP-1/cpn60 chaperonin family Acife_2286 PF00156 Phosphoribosyl transferase domain Acife_2287 PF14306 PUA-like domain Acife_2287 PF01747 ATP-sulfurylase Acife_2289 PF09278 MerR, DNA binding Acife_2289 PF00376 MerR family regulatory protein Acife_2290 PF00403 Heavy-metal-associated domain Acife_2290 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_2290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Acife_2292 PF00384 Molybdopterin oxidoreductase Acife_2294 PF02634 FdhD/NarQ family Acife_2295 PF08240 Alcohol dehydrogenase GroES-like domain Acife_2295 PF00107 Zinc-binding dehydrogenase Acife_2300 PF01348 Type II intron maturase Acife_2300 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Acife_2301 PF01527 Transposase Acife_2302 PF13333 Integrase core domain Acife_2302 PF00665 Integrase core domain Acife_2302 PF13276 HTH-like domain Acife_2308 PF00004 ATPase family associated with various cellular activities (AAA) Acife_2308 PF07724 AAA domain (Cdc48 subfamily) Acife_2308 PF17871 AAA lid domain Acife_2308 PF02861 Clp amino terminal domain, pathogenicity island component Acife_2308 PF10431 C-terminal, D2-small domain, of ClpB protein Acife_2309 PF04055 Radical SAM superfamily Acife_2313 PF00665 Integrase core domain Acife_2314 PF01695 IstB-like ATP binding protein Acife_2317 PF01610 Transposase Acife_2317 PF13542 Helix-turn-helix domain of transposase family ISL3 Acife_2317 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acife_2323 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Acife_2332 PF00589 Phage integrase family Acife_2337 PF08240 Alcohol dehydrogenase GroES-like domain Acife_2337 PF00107 Zinc-binding dehydrogenase Acife_2339 PF00753 Metallo-beta-lactamase superfamily Acife_2340 PF02633 Creatinine amidohydrolase Acife_2341 PF00120 Glutamine synthetase, catalytic domain Acife_2342 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Acife_2343 PF01548 Transposase Acife_2343 PF02371 Transposase IS116/IS110/IS902 family Acife_2347 PF00355 Rieske [2Fe-2S] domain Acife_2347 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Acife_2348 PF01548 Transposase Acife_2348 PF02371 Transposase IS116/IS110/IS902 family Acife_2355 PF16363 GDP-mannose 4,6 dehydratase Acife_2356 PF00111 2Fe-2S iron-sulfur cluster binding domain Acife_2356 PF00175 Oxidoreductase NAD-binding domain Acife_2356 PF00970 Oxidoreductase FAD-binding domain Acife_2359 PF02525 Flavodoxin-like fold Acife_2360 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Acife_2361 PF02371 Transposase IS116/IS110/IS902 family Acife_2361 PF01548 Transposase Acife_2366 PF13476 AAA domain Acife_2367 PF12320 Type 5 capsule protein repressor C-terminal domain Acife_2367 PF00149 Calcineurin-like phosphoesterase Acife_2372 PF04326 Putative DNA-binding domain Acife_2374 PF06470 SMC proteins Flexible Hinge Domain Acife_2374 PF02463 RecF/RecN/SMC N terminal domain Acife_2381 PF00589 Phage integrase family Acife_2382 PF04542 Sigma-70 region 2 Acife_2382 PF03979 Sigma-70 factor, region 1.1 Acife_2382 PF04546 Sigma-70, non-essential region Acife_2382 PF00140 Sigma-70 factor, region 1.2 Acife_2382 PF04545 Sigma-70, region 4 Acife_2382 PF04539 Sigma-70 region 3 Acife_2383 PF01807 CHC2 zinc finger Acife_2383 PF08275 DNA primase catalytic core, N-terminal domain Acife_2383 PF08278 DNA primase DnaG DnaB-binding Acife_2383 PF10410 DnaB-helicase binding domain of primase Acife_2384 PF00488 MutS domain V Acife_2384 PF01713 Smr domain Acife_2386 PF01165 Ribosomal protein S21 Acife_2387 PF04542 Sigma-70 region 2 Acife_2387 PF04545 Sigma-70, region 4 Acife_2387 PF04539 Sigma-70 region 3 Acife_2387 PF00140 Sigma-70 factor, region 1.2 Acife_2388 PF01725 Ham1 family Acife_2389 PF01138 3' exoribonuclease family, domain 1 Acife_2389 PF03725 3' exoribonuclease family, domain 2 Acife_2392 PF06969 HemN C-terminal domain Acife_2392 PF04055 Radical SAM superfamily Acife_2394 PF01479 S4 domain Acife_2394 PF00849 RNA pseudouridylate synthase Acife_2395 PF07690 Major Facilitator Superfamily Acife_2396 PF07943 Penicillin-binding protein 5, C-terminal domain Acife_2396 PF00768 D-alanyl-D-alanine carboxypeptidase Acife_2398 PF08241 Methyltransferase domain Acife_2400 PF01850 PIN domain Acife_2404 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Acife_2404 PF00271 Helicase conserved C-terminal domain Acife_2404 PF08463 EcoEI R protein C-terminal Acife_2404 PF04851 Type III restriction enzyme, res subunit Acife_2406 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Acife_2406 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Acife_2406 PF02769 AIR synthase related protein, C-terminal domain Acife_2407 PF01259 SAICAR synthetase Acife_2408 PF10397 Adenylosuccinate lyase C-terminus Acife_2408 PF00206 Lyase Acife_2410 PF00701 Dihydrodipicolinate synthetase family Acife_2411 PF03006 Haemolysin-III related Acife_2412 PF11741 AMIN domain Acife_2412 PF01520 N-acetylmuramoyl-L-alanine amidase Acife_2413 PF00085 Thioredoxin Acife_2414 PF00462 Glutaredoxin Acife_2415 PF00581 Rhodanese-like domain Acife_2417 PF00873 AcrB/AcrD/AcrF family Acife_2418 PF13533 Biotin-lipoyl like Acife_2421 PF01022 Bacterial regulatory protein, arsR family Acife_2422 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Acife_2425 PF00899 ThiF family Acife_2426 PF01026 TatD related DNase Acife_2427 PF01494 FAD binding domain Acife_2428 PF01494 FAD binding domain Acife_2429 PF04380 Membrane fusogenic activity Acife_2430 PF01078 Magnesium chelatase, subunit ChlI Acife_2430 PF13335 Magnesium chelatase, subunit ChlI C-terminal Acife_2431 PF00199 Catalase Acife_2431 PF06628 Catalase-related immune-responsive Acife_2433 PF16658 Class II release factor RF3, C-terminal domain Acife_2433 PF03144 Elongation factor Tu domain 2 Acife_2433 PF00009 Elongation factor Tu GTP binding domain Acife_2435 PF00814 Glycoprotease family Acife_2436 PF04851 Type III restriction enzyme, res subunit Acife_2436 PF13307 Helicase C-terminal domain Acife_2440 PF00877 NlpC/P60 family Acife_2445 PF07664 Ferrous iron transport protein B C terminus Acife_2445 PF07670 Nucleoside recognition Acife_2445 PF17910 FeoB cytosolic helical domain Acife_2445 PF02421 Ferrous iron transport protein B Acife_2447 PF00795 Carbon-nitrogen hydrolase Acife_2448 PF07722 Peptidase C26 Acife_2449 PF09335 SNARE associated Golgi protein Acife_2455 PF00850 Histone deacetylase domain Acife_2457 PF07728 AAA domain (dynein-related subfamily) Acife_2457 PF08406 CbbQ/NirQ/NorQ C-terminal Acife_2466 PF03099 Biotin/lipoate A/B protein ligase family Acife_2468 PF01597 Glycine cleavage H-protein Acife_2470 PF01597 Glycine cleavage H-protein Acife_2471 PF02754 Cysteine-rich domain Acife_2474 PF01593 Flavin containing amine oxidoreductase Acife_2477 PF13686 DsrE/DsrF/DrsH-like family Acife_2478 PF01206 Sulfurtransferase TusA Acife_2479 PF00581 Rhodanese-like domain Acife_2480 PF06463 Molybdenum Cofactor Synthesis C Acife_2480 PF04055 Radical SAM superfamily Acife_2482 PF12800 4Fe-4S binding domain Acife_2482 PF13247 4Fe-4S dicluster domain Acife_2483 PF00384 Molybdopterin oxidoreductase Acife_2483 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Acife_2483 PF01568 Molydopterin dinucleotide binding domain Acife_2485 PF01967 MoaC family Acife_2487 PF00989 PAS fold Acife_2487 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_2487 PF00512 His Kinase A (phospho-acceptor) domain Acife_2488 PF00072 Response regulator receiver domain Acife_2488 PF00158 Sigma-54 interaction domain Acife_2488 PF02954 Bacterial regulatory protein, Fis family Acife_2493 PF03625 Domain of unknown function DUF302 Acife_2494 PF02872 5'-nucleotidase, C-terminal domain Acife_2494 PF00149 Calcineurin-like phosphoesterase Acife_2496 PF04085 rod shape-determining protein MreC Acife_2499 PF01098 Cell cycle protein Acife_2500 PF07943 Penicillin-binding protein 5, C-terminal domain Acife_2500 PF00768 D-alanyl-D-alanine carboxypeptidase Acife_2502 PF03099 Biotin/lipoate A/B protein ligase family Acife_2503 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Acife_2503 PF04055 Radical SAM superfamily Acife_2504 PF02698 DUF218 domain Acife_2513 PF02091 Glycyl-tRNA synthetase alpha subunit Acife_2514 PF02092 Glycyl-tRNA synthetase beta subunit Acife_2516 PF01553 Acyltransferase Acife_2517 PF18030 RimK PreATP-grasp domain Acife_2517 PF08443 RimK-like ATP-grasp domain Acife_2521 PF01329 Pterin 4 alpha carbinolamine dehydratase Acife_2522 PF02677 Epoxyqueuosine reductase QueH Acife_2523 PF01510 N-acetylmuramoyl-L-alanine amidase Acife_2526 PF00682 HMGL-like Acife_2526 PF08502 LeuA allosteric (dimerisation) domain Acife_2533 PF00216 Bacterial DNA-binding protein Acife_2534 PF03483 B3/4 domain Acife_2534 PF03147 Ferredoxin-fold anticodon binding domain Acife_2534 PF01588 Putative tRNA binding domain Acife_2534 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Acife_2534 PF03484 tRNA synthetase B5 domain Acife_2535 PF01409 tRNA synthetases class II core domain (F) Acife_2535 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Acife_2536 PF00453 Ribosomal protein L20 Acife_2537 PF01632 Ribosomal protein L35 Acife_2538 PF05198 Translation initiation factor IF-3, N-terminal domain Acife_2538 PF00707 Translation initiation factor IF-3, C-terminal domain Acife_2539 PF03129 Anticodon binding domain Acife_2539 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Acife_2539 PF02824 TGS domain Acife_2539 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Acife_2541 PF00361 Proton-conducting membrane transporter Acife_2542 PF00361 Proton-conducting membrane transporter Acife_2542 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Acife_2543 PF00361 Proton-conducting membrane transporter Acife_2543 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Acife_2544 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Acife_2545 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Acife_2546 PF12838 4Fe-4S dicluster domain Acife_2547 PF00146 NADH dehydrogenase Acife_2548 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Acife_2548 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Acife_2548 PF00384 Molybdopterin oxidoreductase Acife_2549 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Acife_2549 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Acife_2549 PF10531 SLBB domain Acife_2551 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Acife_2552 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Acife_2553 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Acife_2554 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Acife_2555 PF03840 Preprotein translocase SecG subunit Acife_2556 PF00121 Triosephosphate isomerase Acife_2557 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Acife_2557 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Acife_2557 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Acife_2557 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Acife_2558 PF00809 Pterin binding enzyme Acife_2559 PF01434 Peptidase family M41 Acife_2559 PF17862 AAA+ lid domain Acife_2559 PF06480 FtsH Extracellular Acife_2559 PF00004 ATPase family associated with various cellular activities (AAA) Acife_2560 PF01523 Putative modulator of DNA gyrase Acife_2561 PF00317 Ribonucleotide reductase, all-alpha domain Acife_2561 PF03477 ATP cone domain Acife_2561 PF02867 Ribonucleotide reductase, barrel domain Acife_2562 PF00268 Ribonucleotide reductase, small chain Acife_2584 PF00892 EamA-like transporter family Acife_2595 PF00510 Cytochrome c oxidase subunit III Acife_2596 PF00115 Cytochrome C and Quinol oxidase polypeptide I Acife_2597 PF06481 COX Aromatic Rich Motif Acife_2597 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Acife_2602 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Acife_2602 PF13360 PQQ-like domain Acife_2602 PF01011 PQQ enzyme repeat Acife_2608 PF00216 Bacterial DNA-binding protein Acife_2615 PF00282 Pyridoxal-dependent decarboxylase conserved domain Acife_2620 PF13005 zinc-finger binding domain of transposase IS66 Acife_2620 PF13007 Transposase C of IS166 homeodomain Acife_2620 PF03050 Transposase IS66 family Acife_2620 PF13817 IS66 C-terminal element Acife_2621 PF02371 Transposase IS116/IS110/IS902 family Acife_2621 PF01548 Transposase Acife_2622 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_2625 PF00258 Flavodoxin Acife_2625 PF00175 Oxidoreductase NAD-binding domain Acife_2625 PF00667 FAD binding domain Acife_2626 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Acife_2626 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Acife_2627 PF01507 Phosphoadenosine phosphosulfate reductase family Acife_2628 PF01507 Phosphoadenosine phosphosulfate reductase family Acife_2629 PF00009 Elongation factor Tu GTP binding domain Acife_2630 PF14824 Sirohaem biosynthesis protein central Acife_2630 PF10414 Sirohaem synthase dimerisation region Acife_2630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Acife_2635 PF01842 ACT domain Acife_2635 PF13840 ACT domain Acife_2635 PF00696 Amino acid kinase family Acife_2636 PF00202 Aminotransferase class-III Acife_2637 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Acife_2637 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Acife_2638 PF00764 Arginosuccinate synthase Acife_2640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Acife_2641 PF00929 Exonuclease Acife_2642 PF00075 RNase H Acife_2643 PF01209 ubiE/COQ5 methyltransferase family Acife_2644 PF16123 Hydroxyacylglutathione hydrolase C-terminus Acife_2644 PF00753 Metallo-beta-lactamase superfamily Acife_2645 PF05193 Peptidase M16 inactive domain Acife_2645 PF00675 Insulinase (Peptidase family M16) Acife_2646 PF00575 S1 RNA binding domain Acife_2646 PF01138 3' exoribonuclease family, domain 1 Acife_2646 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Acife_2646 PF00013 KH domain Acife_2646 PF03725 3' exoribonuclease family, domain 2 Acife_2647 PF00312 Ribosomal protein S15 Acife_2648 PF16198 tRNA pseudouridylate synthase B C-terminal domain Acife_2648 PF01509 TruB family pseudouridylate synthase (N terminal domain) Acife_2648 PF09157 Pseudouridine synthase II TruB, C-terminal Acife_2649 PF02033 Ribosome-binding factor A Acife_2650 PF11987 Translation-initiation factor 2 Acife_2650 PF08364 Bacterial translation initiation factor IF-2 associated region Acife_2650 PF04760 Translation initiation factor IF-2, N-terminal region Acife_2650 PF00009 Elongation factor Tu GTP binding domain Acife_2651 PF13184 NusA-like KH domain Acife_2651 PF08529 NusA N-terminal domain Acife_2652 PF02576 RimP N-terminal domain Acife_2652 PF17384 RimP C-terminal SH3 domain Acife_2653 PF01476 LysM domain Acife_2653 PF03734 L,D-transpeptidase catalytic domain Acife_2653 PF17969 L,D-transpeptidase C-terminal domain Acife_2655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Acife_2655 PF02403 Seryl-tRNA synthetase N-terminal domain Acife_2656 PF12002 MgsA AAA+ ATPase C terminal Acife_2656 PF00004 ATPase family associated with various cellular activities (AAA) Acife_2656 PF16193 AAA C-terminal domain Acife_2658 PF03548 Outer membrane lipoprotein carrier protein LolA Acife_2659 PF01580 FtsK/SpoIIIE family Acife_2659 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Acife_2659 PF17854 FtsK alpha domain Acife_2659 PF09397 Ftsk gamma domain Acife_2660 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_2662 PF13411 MerR HTH family regulatory protein Acife_2663 PF01142 tRNA pseudouridine synthase D (TruD) Acife_2664 PF02542 YgbB family Acife_2665 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Acife_2666 PF17757 UvrB interaction domain Acife_2666 PF03461 TRCF domain Acife_2666 PF00270 DEAD/DEAH box helicase Acife_2666 PF02559 CarD-like/TRCF domain Acife_2666 PF00271 Helicase conserved C-terminal domain Acife_2667 PF13542 Helix-turn-helix domain of transposase family ISL3 Acife_2667 PF01610 Transposase Acife_2667 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Acife_2670 PF08534 Redoxin Acife_2670 PF00462 Glutaredoxin Acife_2671 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Acife_2671 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_2672 PF01048 Phosphorylase superfamily Acife_2677 PF01569 PAP2 superfamily Acife_2679 PF04002 RadC-like JAB domain Acife_2680 PF02441 Flavoprotein Acife_2680 PF04127 DNA / pantothenate metabolism flavoprotein Acife_2681 PF00692 dUTPase Acife_2682 PF01196 Ribosomal protein L17 Acife_2683 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Acife_2683 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Acife_2683 PF01000 RNA polymerase Rpb3/RpoA insert domain Acife_2684 PF01479 S4 domain Acife_2684 PF00163 Ribosomal protein S4/S9 N-terminal domain Acife_2685 PF00411 Ribosomal protein S11 Acife_2686 PF00416 Ribosomal protein S13/S18 Acife_2687 PF00444 Ribosomal protein L36 Acife_2688 PF01176 Translation initiation factor 1A / IF-1 Acife_2689 PF05191 Adenylate kinase, active site lid Acife_2690 PF00344 SecY translocase Acife_2691 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Acife_2692 PF00327 Ribosomal protein L30p/L7e Acife_2693 PF00333 Ribosomal protein S5, N-terminal domain Acife_2693 PF03719 Ribosomal protein S5, C-terminal domain Acife_2694 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Acife_2695 PF00347 Ribosomal protein L6 Acife_2696 PF00410 Ribosomal protein S8 Acife_2697 PF00253 Ribosomal protein S14p/S29e Acife_2698 PF00673 ribosomal L5P family C-terminus Acife_2698 PF00281 Ribosomal protein L5 Acife_2699 PF00467 KOW motif Acife_2699 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Acife_2700 PF00238 Ribosomal protein L14p/L23e Acife_2701 PF00366 Ribosomal protein S17 Acife_2702 PF00831 Ribosomal L29 protein Acife_2703 PF00252 Ribosomal protein L16p/L10e Acife_2704 PF00189 Ribosomal protein S3, C-terminal domain Acife_2704 PF07650 KH domain Acife_2705 PF00237 Ribosomal protein L22p/L17e Acife_2706 PF00203 Ribosomal protein S19 Acife_2707 PF03947 Ribosomal Proteins L2, C-terminal domain Acife_2707 PF00181 Ribosomal Proteins L2, RNA binding domain Acife_2708 PF00276 Ribosomal protein L23 Acife_2709 PF00573 Ribosomal protein L4/L1 family Acife_2710 PF00297 Ribosomal protein L3 Acife_2711 PF00338 Ribosomal protein S10p/S20e Acife_2712 PF00009 Elongation factor Tu GTP binding domain Acife_2712 PF03144 Elongation factor Tu domain 2 Acife_2712 PF03143 Elongation factor Tu C-terminal domain Acife_2713 PF00679 Elongation factor G C-terminus Acife_2713 PF03144 Elongation factor Tu domain 2 Acife_2713 PF00009 Elongation factor Tu GTP binding domain Acife_2713 PF14492 Elongation Factor G, domain II Acife_2713 PF03764 Elongation factor G, domain IV Acife_2714 PF00177 Ribosomal protein S7p/S5e Acife_2715 PF00164 Ribosomal protein S12/S23 Acife_2716 PF04983 RNA polymerase Rpb1, domain 3 Acife_2716 PF00623 RNA polymerase Rpb1, domain 2 Acife_2716 PF04997 RNA polymerase Rpb1, domain 1 Acife_2716 PF05000 RNA polymerase Rpb1, domain 4 Acife_2716 PF04998 RNA polymerase Rpb1, domain 5 Acife_2717 PF10385 RNA polymerase beta subunit external 1 domain Acife_2717 PF04565 RNA polymerase Rpb2, domain 3 Acife_2717 PF04561 RNA polymerase Rpb2, domain 2 Acife_2717 PF04563 RNA polymerase beta subunit Acife_2717 PF04560 RNA polymerase Rpb2, domain 7 Acife_2717 PF00562 RNA polymerase Rpb2, domain 6 Acife_2718 PF00542 Ribosomal protein L7/L12 C-terminal domain Acife_2718 PF16320 Ribosomal protein L7/L12 dimerisation domain Acife_2719 PF00466 Ribosomal protein L10 Acife_2720 PF00687 Ribosomal protein L1p/L10e family Acife_2721 PF03946 Ribosomal protein L11, N-terminal domain Acife_2721 PF00298 Ribosomal protein L11, RNA binding domain Acife_2722 PF00467 KOW motif Acife_2722 PF02357 Transcription termination factor nusG Acife_2724 PF03143 Elongation factor Tu C-terminal domain Acife_2724 PF03144 Elongation factor Tu domain 2 Acife_2724 PF00009 Elongation factor Tu GTP binding domain Acife_2725 PF00691 OmpA family Acife_2725 PF04972 BON domain Acife_2726 PF03109 ABC1 family Acife_2730 PF01029 NusB family Acife_2731 PF00885 6,7-dimethyl-8-ribityllumazine synthase Acife_2732 PF00925 GTP cyclohydrolase II Acife_2732 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Acife_2733 PF00677 Lumazine binding domain Acife_2734 PF01872 RibD C-terminal domain Acife_2734 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Acife_2735 PF03477 ATP cone domain Acife_2736 PF00464 Serine hydroxymethyltransferase Acife_2738 PF00561 alpha/beta hydrolase fold Acife_2739 PF07021 Methionine biosynthesis protein MetW Acife_2739 PF00561 alpha/beta hydrolase fold Acife_2741 PF01209 ubiE/COQ5 methyltransferase family Acife_2742 PF08267 Cobalamin-independent synthase, N-terminal domain Acife_2742 PF01717 Cobalamin-independent synthase, Catalytic domain Acife_2743 PF00484 Carbonic anhydrase Acife_2744 PF01740 STAS domain Acife_2744 PF00916 Sulfate permease family Acife_2745 PF00829 Ribosomal prokaryotic L21 protein Acife_2746 PF01016 Ribosomal L27 protein Acife_2747 PF01926 50S ribosome-binding GTPase Acife_2747 PF01018 GTP1/OBG Acife_2748 PF01472 PUA domain Acife_2748 PF00696 Amino acid kinase family Acife_2749 PF01475 Ferric uptake regulator family Acife_2750 PF04355 SmpA / OmlA family Acife_2751 PF03364 Polyketide cyclase / dehydrase and lipid transport Acife_2752 PF13091 PLD-like domain Acife_2753 PF01668 SmpB protein Acife_2754 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Acife_2757 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Acife_2757 PF02222 ATP-grasp domain Acife_2758 PF00731 AIR carboxylase Acife_2759 PF02390 Putative methyltransferase Acife_2762 PF00437 Type II/IV secretion system protein Acife_2763 PF00437 Type II/IV secretion system protein Acife_2764 PF01168 Alanine racemase, N-terminal domain Acife_2765 PF14748 Pyrroline-5-carboxylate reductase dimerisation Acife_2765 PF03807 NADP oxidoreductase coenzyme F420-dependent Acife_2766 PF02325 YGGT family Acife_2767 PF02594 Uncharacterised ACR, YggU family COG1872 Acife_2768 PF04055 Radical SAM superfamily Acife_2768 PF06968 Biotin and Thiamin Synthesis associated domain Acife_2770 PF13533 Biotin-lipoyl like Acife_2771 PF00696 Amino acid kinase family Acife_2772 PF00440 Bacterial regulatory proteins, tetR family Acife_2776 PF00175 Oxidoreductase NAD-binding domain Acife_2776 PF00111 2Fe-2S iron-sulfur cluster binding domain Acife_2776 PF00970 Oxidoreductase FAD-binding domain Acife_2777 PF00929 Exonuclease Acife_2778 PF03649 Uncharacterised protein family (UPF0014) Acife_2779 PF04376 Arginine-tRNA-protein transferase, N terminus Acife_2779 PF04377 Arginine-tRNA-protein transferase, C terminus Acife_2780 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Acife_2781 PF01435 Peptidase family M48 Acife_2783 PF08241 Methyltransferase domain Acife_2784 PF00561 alpha/beta hydrolase fold Acife_2785 PF00155 Aminotransferase class I and II Acife_2786 PF00156 Phosphoribosyl transferase domain Acife_2787 PF00588 SpoU rRNA Methylase family Acife_2788 PF12867 DinB superfamily Acife_2788 PF03781 Sulfatase-modifying factor enzyme 1 Acife_2789 PF00155 Aminotransferase class I and II Acife_2790 PF03279 Bacterial lipid A biosynthesis acyltransferase Acife_2791 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Acife_2793 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Acife_2794 PF00535 Glycosyl transferase family 2 Acife_2798 PF13439 Glycosyltransferase Family 4 Acife_2798 PF00534 Glycosyl transferases group 1 Acife_2799 PF01522 Polysaccharide deacetylase Acife_2800 PF00535 Glycosyl transferase family 2 Acife_2801 PF00293 NUDIX domain Acife_2802 PF01960 ArgJ family Acife_2803 PF07517 SecA DEAD-like domain Acife_2803 PF01043 SecA preprotein cross-linking domain Acife_2803 PF07516 SecA Wing and Scaffold domain Acife_2803 PF02810 SEC-C motif Acife_2805 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Acife_2806 PF00043 Glutathione S-transferase, C-terminal domain Acife_2806 PF02798 Glutathione S-transferase, N-terminal domain Acife_2807 PF00501 AMP-binding enzyme Acife_2808 PF12627 Probable RNA and SrmB- binding site of polymerase A Acife_2808 PF01743 Poly A polymerase head domain Acife_2808 PF01966 HD domain Acife_2810 PF02381 MraZ protein, putative antitoxin-like Acife_2811 PF01795 MraW methylase family Acife_2813 PF00905 Penicillin binding protein transpeptidase domain Acife_2813 PF03717 Penicillin-binding Protein dimerisation domain Acife_2814 PF01225 Mur ligase family, catalytic domain Acife_2814 PF08245 Mur ligase middle domain Acife_2814 PF02875 Mur ligase family, glutamate ligase domain Acife_2815 PF01225 Mur ligase family, catalytic domain Acife_2815 PF02875 Mur ligase family, glutamate ligase domain Acife_2815 PF08245 Mur ligase middle domain Acife_2816 PF00953 Glycosyl transferase family 4 Acife_2816 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Acife_2817 PF08245 Mur ligase middle domain Acife_2817 PF02875 Mur ligase family, glutamate ligase domain Acife_2818 PF01098 Cell cycle protein Acife_2819 PF04101 Glycosyltransferase family 28 C-terminal domain Acife_2819 PF03033 Glycosyltransferase family 28 N-terminal domain Acife_2820 PF01225 Mur ligase family, catalytic domain Acife_2820 PF02875 Mur ligase family, glutamate ligase domain Acife_2820 PF08245 Mur ligase middle domain Acife_2821 PF01565 FAD binding domain Acife_2821 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Acife_2822 PF07478 D-ala D-ala ligase C-terminus Acife_2822 PF01820 D-ala D-ala ligase N-terminus Acife_2823 PF08478 POTRA domain, FtsQ-type Acife_2823 PF03799 Cell division protein FtsQ Acife_2824 PF02491 SHS2 domain inserted in FTSA Acife_2825 PF00091 Tubulin/FtsZ family, GTPase domain Acife_2825 PF12327 FtsZ family, C-terminal domain Acife_2828 PF01220 Dehydroquinase class II Acife_2829 PF00364 Biotin-requiring enzyme Acife_2830 PF02785 Biotin carboxylase C-terminal domain Acife_2830 PF00289 Biotin carboxylase, N-terminal domain Acife_2830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Acife_2833 PF02954 Bacterial regulatory protein, Fis family Acife_2834 PF01551 Peptidase family M23 Acife_2834 PF01464 Transglycosylase SLT domain Acife_2834 PF10145 Phage-related minor tail protein Acife_2835 PF04386 Stringent starvation protein B Acife_2836 PF01522 Polysaccharide deacetylase Acife_2836 PF03422 Carbohydrate binding module (family 6) Acife_2836 PF00457 Glycosyl hydrolases family 11 Acife_2837 PF04820 Tryptophan halogenase Acife_2842 PF00999 Sodium/hydrogen exchanger family Acife_2846 PF02801 Beta-ketoacyl synthase, C-terminal domain Acife_2846 PF00109 Beta-ketoacyl synthase, N-terminal domain Acife_2852 PF13193 AMP-binding enzyme C-terminal domain Acife_2852 PF00501 AMP-binding enzyme Acife_2855 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Acife_2856 PF07072 Cell division protein Acife_2857 PF01121 Dephospho-CoA kinase Acife_2858 PF01478 Type IV leader peptidase family Acife_2858 PF06750 Bacterial Peptidase A24 N-terminal domain Acife_2859 PF02954 Bacterial regulatory protein, Fis family Acife_2859 PF00072 Response regulator receiver domain Acife_2859 PF00158 Sigma-54 interaction domain Acife_2860 PF00512 His Kinase A (phospho-acceptor) domain Acife_2860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_2861 PF00437 Type II/IV secretion system protein Acife_2861 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Acife_2862 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Acife_2862 PF08501 Shikimate dehydrogenase substrate binding domain Acife_2863 PF03702 Anhydro-N-acetylmuramic acid kinase Acife_2864 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Acife_2865 PF00762 Ferrochelatase Acife_2867 PF13417 Glutathione S-transferase, N-terminal domain Acife_2867 PF00043 Glutathione S-transferase, C-terminal domain Acife_2868 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Acife_2870 PF03372 Endonuclease/Exonuclease/phosphatase family Acife_2871 PF05175 Methyltransferase small domain Acife_2872 PF07690 Major Facilitator Superfamily Acife_2873 PF00924 Mechanosensitive ion channel Acife_2873 PF12794 Mechanosensitive ion channel inner membrane domain 1 Acife_2873 PF12795 Mechanosensitive ion channel porin domain Acife_2874 PF00750 tRNA synthetases class I (R) Acife_2874 PF03485 Arginyl tRNA synthetase N terminal domain Acife_2874 PF05746 DALR anticodon binding domain Acife_2877 PF00398 Ribosomal RNA adenine dimethylase Acife_2879 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Acife_2880 PF01479 S4 domain Acife_2881 PF00005 ABC transporter Acife_2884 PF02470 MlaD protein Acife_2885 PF02405 Permease MlaE Acife_2886 PF00005 ABC transporter Acife_2887 PF02675 S-adenosylmethionine decarboxylase Acife_2888 PF17284 Spermidine synthase tetramerisation domain Acife_2890 PF00072 Response regulator receiver domain Acife_2890 PF00158 Sigma-54 interaction domain Acife_2892 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acife_2892 PF00512 His Kinase A (phospho-acceptor) domain Acife_2893 PF04362 Bacterial Fe(2+) trafficking Acife_2894 PF14815 NUDIX domain Acife_2894 PF00730 HhH-GPD superfamily base excision DNA repair protein Acife_2894 PF00633 Helix-hairpin-helix motif Acife_2896 PF00391 PEP-utilising enzyme, mobile domain Acife_2896 PF05524 PEP-utilising enzyme, N-terminal Acife_2896 PF02896 PEP-utilising enzyme, TIM barrel domain Acife_2897 PF00381 PTS HPr component phosphorylation site Acife_2899 PF03668 P-loop ATPase protein family Acife_2900 PF02603 HPr Serine kinase N terminus Acife_2900 PF07475 HPr Serine kinase C-terminal domain Acife_2901 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Acife_2901 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Acife_2902 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Acife_2903 PF00309 Sigma-54 factor, Activator interacting domain (AID) Acife_2903 PF04963 Sigma-54 factor, core binding domain Acife_2903 PF04552 Sigma-54, DNA binding domain Acife_2904 PF00005 ABC transporter Acife_2905 PF03968 OstA-like protein Acife_2908 PF01380 SIS domain Acife_2908 PF00571 CBS domain Acife_2911 PF00483 Nucleotidyl transferase Acife_2912 PF01636 Phosphotransferase enzyme family Acife_2913 PF04453 LPS transport system D Acife_2914 PF00639 PPIC-type PPIASE domain Acife_2914 PF09312 SurA N-terminal domain Acife_2915 PF01061 ABC-2 type transporter Acife_2916 PF01722 BolA-like protein Acife_2917 PF00462 Glutaredoxin Acife_2918 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Acife_2919 PF01634 ATP phosphoribosyltransferase Acife_2920 PF00815 Histidinol dehydrogenase Acife_2921 PF00155 Aminotransferase class I and II Acife_2922 PF00475 Imidazoleglycerol-phosphate dehydratase Acife_2923 PF00117 Glutamine amidotransferase class-I Acife_2924 PF00977 Histidine biosynthesis protein Acife_2925 PF00977 Histidine biosynthesis protein Acife_2926 PF01502 Phosphoribosyl-AMP cyclohydrolase Acife_2926 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Acife_2927 PF02416 mttA/Hcf106 family Acife_2928 PF02416 mttA/Hcf106 family Acife_2929 PF00902 Sec-independent protein translocase protein (TatC) Acife_2930 PF13439 Glycosyltransferase Family 4 Acife_2930 PF00534 Glycosyl transferases group 1 Acife_2932 PF00313 'Cold-shock' DNA-binding domain Acife_2934 PF03707 Bacterial signalling protein N terminal repeat Acife_2934 PF00990 Diguanylate cyclase, GGDEF domain Acife_2934 PF00563 EAL domain Acife_2935 PF02705 K+ potassium transporter Acife_2939 PF01979 Amidohydrolase family Acife_2940 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Acife_2940 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Acife_2941 PF00156 Phosphoribosyl transferase domain Acife_2942 PF03652 Holliday junction resolvase Acife_2943 PF02622 Uncharacterized ACR, COG1678 Acife_2949 PF00665 Integrase core domain Acife_2957 PF01906 Putative heavy-metal-binding Acife_2959 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Acife_2967 PF01850 PIN domain Acife_2972 PF06122 Conjugative relaxosome accessory transposon protein Acife_2988 PF00436 Single-strand binding protein family Acife_2990 PF01131 DNA topoisomerase Acife_2990 PF01751 Toprim domain Acife_2993 PF08406 CbbQ/NirQ/NorQ C-terminal Acife_2993 PF07728 AAA domain (dynein-related subfamily) Acife_2998 PF02163 Peptidase family M50 Acife_3004 PF00476 DNA polymerase family A Acife_3004 PF01367 5'-3' exonuclease, C-terminal SAM fold Acife_3004 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Acife_3007 PF00216 Bacterial DNA-binding protein Acife_3008 PF00216 Bacterial DNA-binding protein Acife_3010 PF00589 Phage integrase family Acife_3010 PF02899 Phage integrase, N-terminal SAM-like domain Acife_3014 PF01040 UbiA prenyltransferase family Acife_3015 PF04030 D-arabinono-1,4-lactone oxidase Acife_3015 PF01565 FAD binding domain Acife_3016 PF00106 short chain dehydrogenase Acife_3018 PF16363 GDP-mannose 4,6 dehydratase Acife_3019 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_3019 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Acife_3034 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Acife_3035 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Acife_3045 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Acife_3045 PF00437 Type II/IV secretion system protein Acife_3067 PF01751 Toprim domain Acife_3067 PF01396 Topoisomerase DNA binding C4 zinc finger Acife_3067 PF01131 DNA topoisomerase Acife_3075 PF13356 Arm DNA-binding domain Acife_3075 PF00589 Phage integrase family Acife_3076 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Acife_3076 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Acife_3078 PF00285 Citrate synthase, C-terminal domain Acife_3079 PF01521 Iron-sulphur cluster biosynthesis Acife_3080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Acife_3080 PF07992 Pyridine nucleotide-disulphide oxidoreductase Acife_3081 PF00364 Biotin-requiring enzyme Acife_3081 PF02779 Transketolase, pyrimidine binding domain Acife_3081 PF02780 Transketolase, C-terminal domain Acife_3082 PF00676 Dehydrogenase E1 component Acife_3085 PF02774 Semialdehyde dehydrogenase, dimerisation domain Acife_3085 PF01118 Semialdehyde dehydrogenase, NAD binding domain Acife_3086 PF00380 Ribosomal protein S9/S16 Acife_3087 PF00572 Ribosomal protein L13 Acife_3090 PF00881 Nitroreductase family Acife_3092 PF00579 tRNA synthetases class I (W and Y) Acife_3093 PF00690 Cation transporter/ATPase, N-terminus Acife_3093 PF00689 Cation transporting ATPase, C-terminus Acife_3095 PF02261 Aspartate decarboxylase Acife_3097 PF01926 50S ribosome-binding GTPase Acife_3098 PF07885 Ion channel Acife_3098 PF02254 TrkA-N domain Acife_3099 PF01367 5'-3' exonuclease, C-terminal SAM fold Acife_3099 PF00476 DNA polymerase family A Acife_3099 PF01612 3'-5' exonuclease Acife_3099 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Acife_3100 PF03641 Possible lysine decarboxylase Acife_3102 PF01636 Phosphotransferase enzyme family Acife_3104 PF13361 UvrD-like helicase C-terminal domain Acife_3104 PF00580 UvrD/REP helicase N-terminal domain Acife_3105 PF01556 DnaJ C terminal domain Acife_3105 PF00226 DnaJ domain Acife_3108 PF14791 DNA polymerase beta thumb Acife_3108 PF14716 Helix-hairpin-helix domain Acife_3108 PF02811 PHP domain Acife_3109 PF00561 alpha/beta hydrolase fold Acife_3114 PF03358 NADPH-dependent FMN reductase Acife_3116 PF00893 Small Multidrug Resistance protein Acife_3118 PF01878 EVE domain Acife_3120 PF13280 WYL domain Acife_3120 PF08279 HTH domain Acife_3123 PF00583 Acetyltransferase (GNAT) family Acife_3126 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Acife_3128 PF00361 Proton-conducting membrane transporter Acife_3128 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Acife_3131 PF01116 Fructose-bisphosphate aldolase class-II Acife_3133 PF07728 AAA domain (dynein-related subfamily) Acife_3133 PF08406 CbbQ/NirQ/NorQ C-terminal Acife_3135 PF13614 AAA domain Acife_3137 PF00210 Ferritin-like domain Acife_3141 PF03319 Ethanolamine utilisation protein EutN/carboxysome Acife_3144 PF00101 Ribulose bisphosphate carboxylase, small chain Acife_3145 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Acife_3145 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Acife_3146 PF03466 LysR substrate binding domain Acife_3146 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acife_3149 PF07690 Major Facilitator Superfamily Acife_3151 PF00654 Voltage gated chloride channel Acife_3152 PF03466 LysR substrate binding domain Acife_3152 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Acife_3155 PF00732 GMC oxidoreductase Acife_3155 PF05199 GMC oxidoreductase Acife_3158 PF00563 EAL domain Acife_3158 PF00990 Diguanylate cyclase, GGDEF domain Acife_3158 PF03707 Bacterial signalling protein N terminal repeat Acife_3161 PF07690 Major Facilitator Superfamily Acife_3162 PF10005 zinc-ribbon domain Acife_3162 PF15887 Putative zinc-binding metallo-peptidase Acife_3175 PF00005 ABC transporter Acife_3176 PF01042 Endoribonuclease L-PSP Acife_3177 PF03069 Acetamidase/Formamidase family Acife_3179 PF01925 Sulfite exporter TauE/SafE Acife_3182 PF13086 AAA domain Acife_3182 PF13195 Protein of unknown function (DUF4011) Acife_3182 PF13195 Protein of unknown function (DUF4011) Acife_3182 PF13086 AAA domain Acife_3182 PF13087 AAA domain Acife_3182 PF13087 AAA domain Acife_3187 PF01380 SIS domain Acife_3188 PF12804 MobA-like NTP transferase domain Acife_3188 PF14602 Hexapeptide repeat of succinyl-transferase Acife_3188 PF00132 Bacterial transferase hexapeptide (six repeats) Acife_3189 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Acife_3189 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Acife_3190 PF02874 ATP synthase alpha/beta family, beta-barrel domain Acife_3190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Acife_3191 PF00231 ATP synthase Acife_3192 PF02874 ATP synthase alpha/beta family, beta-barrel domain Acife_3192 PF00306 ATP synthase alpha/beta chain, C terminal domain Acife_3192 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Acife_3193 PF00213 ATP synthase delta (OSCP) subunit Acife_3194 PF00430 ATP synthase B/B' CF(0) Acife_3195 PF00137 ATP synthase subunit C Acife_3196 PF00119 ATP synthase A chain Acife_3198 PF17762 HTH domain found in ParB protein Acife_3198 PF02195 ParB-like nuclease domain Acife_3199 PF13614 AAA domain Acife_3200 PF02527 rRNA small subunit methyltransferase G Acife_3201 PF13932 GidA associated domain Acife_3201 PF01134 Glucose inhibited division protein A Acife_3204 PF00994 Probable molybdopterin binding domain Acife_3210 PF02754 Cysteine-rich domain Acife_3210 PF13183 4Fe-4S dicluster domain Acife_3211 PF01565 FAD binding domain Acife_3212 PF02913 FAD linked oxidases, C-terminal domain Acife_3212 PF01565 FAD binding domain Acife_3215 PF01614 Bacterial transcriptional regulator Acife_3215 PF09339 IclR helix-turn-helix domain Acife_3218 PF00534 Glycosyl transferases group 1 Acife_3218 PF13439 Glycosyltransferase Family 4 Acife_3222 PF13817 IS66 C-terminal element Acife_3222 PF13007 Transposase C of IS166 homeodomain Acife_3222 PF13005 zinc-finger binding domain of transposase IS66 Acife_3222 PF03050 Transposase IS66 family Acife_3224 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Acife_3228 PF16363 GDP-mannose 4,6 dehydratase Acife_3230 PF01370 NAD dependent epimerase/dehydratase family Acife_3231 PF14307 Glycosyltransferase WbsX Acife_3231 PF05045 Rhamnan synthesis protein F Acife_3238 PF00535 Glycosyl transferase family 2 Acife_3239 PF00005 ABC transporter Acife_3240 PF01061 ABC-2 type transporter Acife_3250 PF16363 GDP-mannose 4,6 dehydratase Acife_3251 PF04321 RmlD substrate binding domain Acife_3252 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Acife_3253 PF00483 Nucleotidyl transferase Acife_3254 PF00083 Sugar (and other) transporter Acife_3256 PF00490 Delta-aminolevulinic acid dehydratase Acife_3258 PF03900 Porphobilinogen deaminase, C-terminal domain Acife_3258 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Acife_3260 PF01230 HIT domain Acife_3261 PF00202 Aminotransferase class-III Acife_3262 PF02581 Thiamine monophosphate synthase Acife_3263 PF08543 Phosphomethylpyrimidine kinase Acife_3267 PF02167 Cytochrome C1 family Acife_3268 PF00032 Cytochrome b(C-terminal)/b6/petD Acife_3268 PF00033 Cytochrome b/b6/petB Acife_3269 PF00355 Rieske [2Fe-2S] domain Acife_3269 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Acife_3271 PF00034 Cytochrome c