Acife_0001 SM00382 ATPases associated with a variety of cellular activities Acife_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Acife_0002 SM00480 DNA polymerase III beta subunit Acife_0004 SM00387 Histidine kinase-like ATPases Acife_0004 SM00433 TopoisomeraseII Acife_0011 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Acife_0011 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Acife_0011 SM00493 Acife_0011 Acife_0014 SM00257 Lysin motif Acife_0019 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acife_0019 SM00387 Histidine kinase-like ATPases Acife_0019 SM00388 His Kinase A (phosphoacceptor) domain Acife_0020 SM00448 cheY-homologous receiver domain Acife_0022 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Acife_0022 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acife_0024 SM01068 Putative carbohydrate binding domain Acife_0027 SM00052 Putative diguanylate phosphodiesterase Acife_0027 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Acife_0027 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Acife_0027 SM00091 PAS domain Acife_0027 SM00267 diguanylate cyclase Acife_0032 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_0033 SM00905 Dihydroneopterin aldolase Acife_0034 SM01207 Acife_0034 Acife_0037 SM00564 beta-propeller repeat Acife_0053 SM00448 cheY-homologous receiver domain Acife_0053 SM00862 Transcriptional regulatory protein, C terminal Acife_0054 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acife_0054 SM00387 Histidine kinase-like ATPases Acife_0054 SM00388 His Kinase A (phosphoacceptor) domain Acife_0062 SM00382 ATPases associated with a variety of cellular activities Acife_0068 SM00567 E-Z type HEAT repeats Acife_0071 SM00345 helix_turn_helix gluconate operon transcriptional repressor Acife_0071 SM00866 Acife_0071 Acife_0072 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_0085 SM00357 Cold shock protein domain Acife_0087 SM00052 Putative diguanylate phosphodiesterase Acife_0087 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Acife_0087 SM00267 diguanylate cyclase Acife_0088 SM00316 Ribosomal protein S1-like RNA-binding domain Acife_0101 SM00862 Transcriptional regulatory protein, C terminal Acife_0110 SM00831 Cation transporter/ATPase, N-terminus Acife_0118 SM00460 Transglutaminase/protease-like homologues Acife_0133 SM00028 Tetratricopeptide repeats Acife_0141 SM00382 ATPases associated with a variety of cellular activities Acife_0142 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acife_0145 SM00563 Phosphate acyltransferases Acife_0148 SM00834 Putative regulatory protein Acife_0151 SM00382 ATPases associated with a variety of cellular activities Acife_0154 SM01234 Acife_0154 Acife_0161 SM00487 DEAD-like helicases superfamily Acife_0168 SM00382 ATPases associated with a variety of cellular activities Acife_0180 SM00966 SpoVT / AbrB like domain Acife_0187 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Acife_0188 SM00861 Transketolase, pyrimidine binding domain Acife_0217 SM00448 cheY-homologous receiver domain Acife_0217 SM00862 Transcriptional regulatory protein, C terminal Acife_0218 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acife_0218 SM00387 Histidine kinase-like ATPases Acife_0218 SM00388 His Kinase A (phosphoacceptor) domain Acife_0224 SM00936 Penicillin-binding protein 5, C-terminal domain Acife_0228 SM00867 YceI-like domain Acife_0239 SM00052 Putative diguanylate phosphodiesterase Acife_0239 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Acife_0239 SM00267 diguanylate cyclase Acife_0242 SM00091 PAS domain Acife_0242 SM00331 Sigma factor PP2C-like phosphatases Acife_0244 SM00938 Nitrogen regulatory protein P-II Acife_0249 SM00763 PrkA AAA domain Acife_0252 SM00460 Transglutaminase/protease-like homologues Acife_0256 SM00387 Histidine kinase-like ATPases Acife_0256 SM00388 His Kinase A (phosphoacceptor) domain Acife_0257 SM00382 ATPases associated with a variety of cellular activities Acife_0257 SM00448 cheY-homologous receiver domain Acife_0264 SM00382 ATPases associated with a variety of cellular activities Acife_0266 SM00986 Uracil DNA glycosylase superfamily Acife_0266 SM00987 UreE urease accessory protein, C-terminal domain Acife_0274 SM00858 Acife_0274 Acife_0282 SM00421 helix_turn_helix, Lux Regulon Acife_0289 SM00382 ATPases associated with a variety of cellular activities Acife_0289 SM00962 SRP54-type protein, GTPase domain Acife_0289 SM00963 SRP54-type protein, helical bundle domain Acife_0296 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acife_0306 SM00487 DEAD-like helicases superfamily Acife_0314 SM00642 Alpha-amylase domain Acife_0316 SM00244 prohibitin homologues Acife_0330 SM00382 ATPases associated with a variety of cellular activities Acife_0331 SM01005 Alanine racemase, C-terminal domain Acife_0332 SM00382 ATPases associated with a variety of cellular activities Acife_0334 SM01011 Aminopeptidase P, N-terminal domain Acife_0357 SM00822 Acife_0357 Acife_0359 SM00411 bacterial (prokaryotic) histone like domain Acife_0366 SM00487 DEAD-like helicases superfamily Acife_0366 SM00490 helicase superfamily c-terminal domain Acife_0367 SM00487 DEAD-like helicases superfamily Acife_0367 SM00490 helicase superfamily c-terminal domain Acife_0386 SM00342 helix_turn_helix, arabinose operon control protein Acife_0386 SM00478 endonuclease III Acife_0386 SM01009 AlkA N-terminal domain Acife_0390 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_0412 SM00530 Helix-turn-helix XRE-family like proteins Acife_0414 SM00530 Helix-turn-helix XRE-family like proteins Acife_0420 SM00382 ATPases associated with a variety of cellular activities Acife_0435 SM00382 ATPases associated with a variety of cellular activities Acife_0450 SM00347 helix_turn_helix multiple antibiotic resistance protein Acife_0451 SM00704 CDGSH-type zinc finger. Function unknown. Acife_0452 SM00867 YceI-like domain Acife_0456 SM00052 Putative diguanylate phosphodiesterase Acife_0456 SM00267 diguanylate cyclase Acife_0489 SM00422 helix_turn_helix, mercury resistance Acife_0495 SM00028 Tetratricopeptide repeats Acife_0523 SM00487 DEAD-like helicases superfamily Acife_0523 SM00490 helicase superfamily c-terminal domain Acife_0529 SM00267 diguanylate cyclase Acife_0530 SM00778 Zinc-binding domain of primase-helicase Acife_0541 SM00382 ATPases associated with a variety of cellular activities Acife_0544 SM01400 Acife_0544 Acife_0547 SM00028 Tetratricopeptide repeats Acife_0549 SM00937 Acife_0549 Acife_0551 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Acife_0551 SM01232 Acife_0551 Acife_0556 SM00382 ATPases associated with a variety of cellular activities Acife_0556 SM00962 SRP54-type protein, GTPase domain Acife_0556 SM00963 SRP54-type protein, helical bundle domain Acife_0557 SM00382 ATPases associated with a variety of cellular activities Acife_0561 SM00382 ATPases associated with a variety of cellular activities Acife_0561 SM01086 C-terminal, D2-small domain, of ClpB protein Acife_0568 SM00838 Elongation factor G C-terminus Acife_0571 SM01103 Acife_0571 Acife_0576 SM01204 Acife_0576 Acife_0577 SM00478 endonuclease III Acife_0579 SM00849 Metallo-beta-lactamase superfamily Acife_0579 SM01027 Beta-Casp domain Acife_0593 SM00271 DnaJ molecular chaperone homology domain Acife_0606 SM00642 Alpha-amylase domain Acife_0607 SM00642 Alpha-amylase domain Acife_0608 SM00642 Alpha-amylase domain Acife_0609 SM00642 Alpha-amylase domain Acife_0620 SM00849 Metallo-beta-lactamase superfamily Acife_0624 SM00257 Lysin motif Acife_0627 SM01329 Acife_0627 Acife_0630 SM00881 CoA binding domain Acife_0632 SM00938 Nitrogen regulatory protein P-II Acife_0634 SM00363 S4 RNA-binding domain Acife_0639 SM01007 Class II Aldolase and Adducin N-terminal domain Acife_0649 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Acife_0651 SM01092 CO dehydrogenase flavoprotein C-terminal domain Acife_0675 SM00487 DEAD-like helicases superfamily Acife_0682 SM00382 ATPases associated with a variety of cellular activities Acife_0682 SM00448 cheY-homologous receiver domain Acife_0684 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acife_0684 SM00387 Histidine kinase-like ATPases Acife_0684 SM00388 His Kinase A (phosphoacceptor) domain Acife_0700 SM01126 Acife_0700 Acife_0702 SM00857 Resolvase, N terminal domain Acife_0710 SM00382 ATPases associated with a variety of cellular activities Acife_0713 SM00530 Helix-turn-helix XRE-family like proteins Acife_0728 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acife_0728 SM00382 ATPases associated with a variety of cellular activities Acife_0730 SM00411 bacterial (prokaryotic) histone like domain Acife_0732 SM00960 Roadblock/LC7 domain Acife_0734 SM00052 Putative diguanylate phosphodiesterase Acife_0734 SM00267 diguanylate cyclase Acife_0735 SM00938 Nitrogen regulatory protein P-II Acife_0736 SM00960 Roadblock/LC7 domain Acife_0738 SM00953 Acife_0738 Acife_0752 SM00411 bacterial (prokaryotic) histone like domain Acife_0756 SM00857 Resolvase, N terminal domain Acife_0774 SM00422 helix_turn_helix, mercury resistance Acife_0783 SM00855 Phosphoglycerate mutase family Acife_0793 SM01192 Acife_0793 Acife_0793 SM01193 Acife_0793 Acife_0795 SM01133 Acife_0795 Acife_0797 SM00831 Cation transporter/ATPase, N-terminus Acife_0800 SM00861 Transketolase, pyrimidine binding domain Acife_0805 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Acife_0826 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_0838 SM00487 DEAD-like helicases superfamily Acife_0853 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Acife_0853 SM01232 Acife_0853 Acife_0854 SM00450 Rhodanese Homology Domain Acife_0856 SM01230 Acife_0856 Acife_0878 SM00966 SpoVT / AbrB like domain Acife_0883 SM00487 DEAD-like helicases superfamily Acife_0884 SM00974 Acife_0884 Acife_0905 SM00382 ATPases associated with a variety of cellular activities Acife_0915 SM00052 Putative diguanylate phosphodiesterase Acife_0915 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Acife_0915 SM00267 diguanylate cyclase Acife_0917 SM00052 Putative diguanylate phosphodiesterase Acife_0924 SM00989 Acife_0924 Acife_0928 SM00382 ATPases associated with a variety of cellular activities Acife_0956 SM00986 Uracil DNA glycosylase superfamily Acife_0956 SM00987 UreE urease accessory protein, C-terminal domain Acife_0958 SM00382 ATPases associated with a variety of cellular activities Acife_0958 SM01086 C-terminal, D2-small domain, of ClpB protein Acife_0962 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acife_0962 SM00245 tail specific protease Acife_0967 SM00450 Rhodanese Homology Domain Acife_0971 SM00996 S-adenosyl-L-homocysteine hydrolase Acife_0971 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Acife_0975 SM00487 DEAD-like helicases superfamily Acife_0975 SM00490 helicase superfamily c-terminal domain Acife_0976 SM00357 Cold shock protein domain Acife_0977 SM00487 DEAD-like helicases superfamily Acife_0977 SM00490 helicase superfamily c-terminal domain Acife_0982 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_0985 SM00116 Domain in cystathionine beta-synthase and other proteins. Acife_0985 SM01091 Transporter associated domain Acife_0989 SM00382 ATPases associated with a variety of cellular activities Acife_1002 SM00382 ATPases associated with a variety of cellular activities Acife_1003 SM00984 UDP binding domain Acife_1005 SM00855 Phosphoglycerate mutase family Acife_1007 SM00530 Helix-turn-helix XRE-family like proteins Acife_1024 SM00851 MGS-like domain Acife_1024 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Acife_1025 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Acife_1027 SM00849 Metallo-beta-lactamase superfamily Acife_1038 SM00530 Helix-turn-helix XRE-family like proteins Acife_1044 SM00382 ATPases associated with a variety of cellular activities Acife_1046 SM00857 Resolvase, N terminal domain Acife_1058 SM00479 Acife_1058 Acife_1059 SM00448 cheY-homologous receiver domain Acife_1059 SM00862 Transcriptional regulatory protein, C terminal Acife_1060 SM00387 Histidine kinase-like ATPases Acife_1060 SM00388 His Kinase A (phosphoacceptor) domain Acife_1071 SM01209 Acife_1071 Acife_1071 SM01210 Acife_1071 Acife_1072 SM00798 AICARFT/IMPCHase bienzyme Acife_1072 SM00851 MGS-like domain Acife_1073 SM00849 Metallo-beta-lactamase superfamily Acife_1074 SM00960 Roadblock/LC7 domain Acife_1080 SM00387 Histidine kinase-like ATPases Acife_1080 SM00388 His Kinase A (phosphoacceptor) domain Acife_1081 SM00448 cheY-homologous receiver domain Acife_1081 SM00862 Transcriptional regulatory protein, C terminal Acife_1088 SM00052 Putative diguanylate phosphodiesterase Acife_1088 SM00267 diguanylate cyclase Acife_1091 SM00840 Acife_1091 Acife_1092 SM00316 Ribosomal protein S1-like RNA-binding domain Acife_1093 SM00363 S4 RNA-binding domain Acife_1117 SM00382 ATPases associated with a variety of cellular activities Acife_1119 SM00769 Water Stress and Hypersensitive response Acife_1126 SM00382 ATPases associated with a variety of cellular activities Acife_1128 SM00357 Cold shock protein domain Acife_1128 SM00382 ATPases associated with a variety of cellular activities Acife_1128 SM00959 Rho termination factor, N-terminal domain Acife_1130 SM00919 Malic enzyme, NAD binding domain Acife_1130 SM01274 Acife_1130 Acife_1138 SM00382 ATPases associated with a variety of cellular activities Acife_1139 SM00966 SpoVT / AbrB like domain Acife_1182 SM00014 Acid phosphatase homologues Acife_1223 SM01219 Acife_1223 Acife_1224 SM00341 Helicase and RNase D C-terminal Acife_1224 SM00487 DEAD-like helicases superfamily Acife_1224 SM00490 helicase superfamily c-terminal domain Acife_1224 SM00956 Acife_1224 Acife_1228 SM00382 ATPases associated with a variety of cellular activities Acife_1233 SM00363 S4 RNA-binding domain Acife_1240 SM00327 von Willebrand factor (vWF) type A domain Acife_1249 SM00530 Helix-turn-helix XRE-family like proteins Acife_1274 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_1283 SM00845 GatB domain Acife_1285 SM00487 DEAD-like helicases superfamily Acife_1285 SM00490 helicase superfamily c-terminal domain Acife_1286 SM00448 cheY-homologous receiver domain Acife_1286 SM00862 Transcriptional regulatory protein, C terminal Acife_1287 SM00387 Histidine kinase-like ATPases Acife_1287 SM00388 His Kinase A (phosphoacceptor) domain Acife_1291 SM00382 ATPases associated with a variety of cellular activities Acife_1303 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acife_1305 SM00935 Outer membrane protein (OmpH-like) Acife_1313 SM00481 DNA polymerase alpha chain like domain Acife_1315 SM00977 TilS substrate C-terminal domain Acife_1327 SM00382 ATPases associated with a variety of cellular activities Acife_1328 SM00052 Putative diguanylate phosphodiesterase Acife_1328 SM00267 diguanylate cyclase Acife_1330 SM00382 ATPases associated with a variety of cellular activities Acife_1332 SM00419 helix_turn_helix, cAMP Regulatory protein Acife_1333 SM00869 Autotransporter beta-domain Acife_1334 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_1337 SM00052 Putative diguanylate phosphodiesterase Acife_1337 SM00267 diguanylate cyclase Acife_1337 SM00448 cheY-homologous receiver domain Acife_1338 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Acife_1338 SM00091 PAS domain Acife_1338 SM00387 Histidine kinase-like ATPases Acife_1338 SM00388 His Kinase A (phosphoacceptor) domain Acife_1338 SM00448 cheY-homologous receiver domain Acife_1343 SM00849 Metallo-beta-lactamase superfamily Acife_1344 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_1355 SM00487 DEAD-like helicases superfamily Acife_1355 SM00490 helicase superfamily c-terminal domain Acife_1356 SM00829 Enoylreductase Acife_1359 SM01192 Acife_1359 Acife_1359 SM01193 Acife_1359 Acife_1361 SM00841 Elongation factor P, C-terminal Acife_1361 SM01185 Acife_1361 Acife_1363 SM00465 GIY-YIG type nucleases (URI domain) Acife_1367 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_1369 SM01350 Acife_1369 Acife_1372 SM00382 ATPases associated with a variety of cellular activities Acife_1387 SM00434 DNA Topoisomerase IV Acife_1389 SM00830 Chorismate mutase type II Acife_1395 SM00316 Ribosomal protein S1-like RNA-binding domain Acife_1396 SM00411 bacterial (prokaryotic) histone like domain Acife_1398 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Acife_1402 SM00382 ATPases associated with a variety of cellular activities Acife_1402 SM00994 ClpX C4-type zinc finger Acife_1402 SM01086 C-terminal, D2-small domain, of ClpB protein Acife_1403 SM00382 ATPases associated with a variety of cellular activities Acife_1403 SM00464 Found in ATP-dependent protease La (LON) Acife_1404 SM00411 bacterial (prokaryotic) histone like domain Acife_1411 SM00880 Acife_1411 Acife_1411 SM01118 Acife_1411 Acife_1423 SM00244 prohibitin homologues Acife_1424 SM00244 prohibitin homologues Acife_1426 SM00788 Adenylosuccinate synthetase Acife_1428 SM00316 Ribosomal protein S1-like RNA-binding domain Acife_1428 SM00357 Cold shock protein domain Acife_1428 SM00955 Acife_1428 Acife_1431 SM00852 Probable molybdopterin binding domain Acife_1442 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Acife_1443 SM00822 Acife_1443 Acife_1444 SM00823 Phosphopantetheine attachment site Acife_1445 SM00825 Beta-ketoacyl synthase Acife_1460 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Acife_1467 SM00155 Phospholipase D. Active site motifs. Acife_1471 SM00421 helix_turn_helix, Lux Regulon Acife_1478 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_1500 SM00530 Helix-turn-helix XRE-family like proteins Acife_1501 SM00382 ATPases associated with a variety of cellular activities Acife_1503 SM00493 Acife_1503 Acife_1507 SM00116 Domain in cystathionine beta-synthase and other proteins. Acife_1509 SM00853 MutL C terminal dimerisation domain Acife_1509 SM01340 Acife_1509 Acife_1511 SM00562 Acife_1511 Acife_1513 SM00028 Tetratricopeptide repeats Acife_1514 SM00530 Helix-turn-helix XRE-family like proteins Acife_1518 SM00564 beta-propeller repeat Acife_1521 SM00855 Phosphoglycerate mutase family Acife_1530 SM00382 ATPases associated with a variety of cellular activities Acife_1532 SM00226 Low molecular weight phosphatase family Acife_1533 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_1558 SM00671 Sel1-like repeats. Acife_1566 SM00670 Large family of predicted nucleotide-binding domains Acife_1569 SM00966 SpoVT / AbrB like domain Acife_1570 SM00966 SpoVT / AbrB like domain Acife_1572 SM00387 Histidine kinase-like ATPases Acife_1574 SM00530 Helix-turn-helix XRE-family like proteins Acife_1579 SM00052 Putative diguanylate phosphodiesterase Acife_1579 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Acife_1579 SM00091 PAS domain Acife_1579 SM00267 diguanylate cyclase Acife_1588 SM00028 Tetratricopeptide repeats Acife_1591 SM00387 Histidine kinase-like ATPases Acife_1591 SM00388 His Kinase A (phosphoacceptor) domain Acife_1591 SM00448 cheY-homologous receiver domain Acife_1592 SM00448 cheY-homologous receiver domain Acife_1592 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acife_1599 SM00267 diguanylate cyclase Acife_1605 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acife_1605 SM00292 breast cancer carboxy-terminal domain Acife_1605 SM00532 Ligase N family Acife_1611 SM00670 Large family of predicted nucleotide-binding domains Acife_1620 SM00893 Electron transfer flavoprotein domain Acife_1621 SM00893 Electron transfer flavoprotein domain Acife_1625 SM00382 ATPases associated with a variety of cellular activities Acife_1629 SM00834 Putative regulatory protein Acife_1630 SM00248 ankyrin repeats Acife_1630 SM00450 Rhodanese Homology Domain Acife_1654 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Acife_1654 SM00382 ATPases associated with a variety of cellular activities Acife_1679 SM00953 Acife_1679 Acife_1681 SM00342 helix_turn_helix, arabinose operon control protein Acife_1681 SM00478 endonuclease III Acife_1681 SM01009 AlkA N-terminal domain Acife_1685 SM00344 helix_turn_helix ASNC type Acife_1686 SM00917 LeuA allosteric (dimerisation) domain Acife_1690 SM00831 Cation transporter/ATPase, N-terminus Acife_1701 SM00861 Transketolase, pyrimidine binding domain Acife_1705 SM00382 ATPases associated with a variety of cellular activities Acife_1705 SM01086 C-terminal, D2-small domain, of ClpB protein Acife_1721 SM00966 SpoVT / AbrB like domain Acife_1732 SM00014 Acid phosphatase homologues Acife_1749 SM00014 Acid phosphatase homologues Acife_1754 SM00984 UDP binding domain Acife_1759 SM00358 Double-stranded RNA binding motif Acife_1759 SM00535 Ribonuclease III family Acife_1762 SM00838 Elongation factor G C-terminus Acife_1763 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Acife_1770 SM00897 FIST N domain Acife_1770 SM01204 Acife_1770 Acife_1771 SM00849 Metallo-beta-lactamase superfamily Acife_1773 SM00967 RNA 2'-O ribose methyltransferase substrate binding Acife_1777 SM00481 DNA polymerase alpha chain like domain Acife_1781 SM00382 ATPases associated with a variety of cellular activities Acife_1782 SM00460 Transglutaminase/protease-like homologues Acife_1784 SM00382 ATPases associated with a variety of cellular activities Acife_1796 SM00671 Sel1-like repeats. Acife_1804 SM00382 ATPases associated with a variety of cellular activities Acife_1810 SM01252 Acife_1810 Acife_1812 SM00382 ATPases associated with a variety of cellular activities Acife_1815 SM00487 DEAD-like helicases superfamily Acife_1815 SM00490 helicase superfamily c-terminal domain Acife_1830 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Acife_1832 SM00382 ATPases associated with a variety of cellular activities Acife_1839 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acife_1857 SM00387 Histidine kinase-like ATPases Acife_1858 SM00448 cheY-homologous receiver domain Acife_1859 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Acife_1887 SM00347 helix_turn_helix multiple antibiotic resistance protein Acife_1890 SM00470 ParB-like nuclease domain Acife_1900 SM00869 Autotransporter beta-domain Acife_1904 SM00382 ATPases associated with a variety of cellular activities Acife_1912 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Acife_1912 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Acife_1912 SM00493 Acife_1912 Acife_1919 SM00482 DNA polymerase A domain Acife_1924 SM00966 SpoVT / AbrB like domain Acife_1953 SM00487 DEAD-like helicases superfamily Acife_1953 SM00490 helicase superfamily c-terminal domain Acife_1956 SM00411 bacterial (prokaryotic) histone like domain Acife_1962 SM00411 bacterial (prokaryotic) histone like domain Acife_1986 SM00563 Phosphate acyltransferases Acife_1993 SM00470 ParB-like nuclease domain Acife_1996 SM00487 DEAD-like helicases superfamily Acife_1996 SM00490 helicase superfamily c-terminal domain Acife_2018 SM01133 Acife_2018 Acife_2026 SM00478 endonuclease III Acife_2027 SM00363 S4 RNA-binding domain Acife_2038 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Acife_2040 SM00116 Domain in cystathionine beta-synthase and other proteins. Acife_2040 SM01240 Acife_2040 Acife_2050 SM00463 Small MutS-related domain Acife_2052 SM00479 Acife_2052 Acife_2054 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Acife_2054 SM00534 ATPase domain of DNA mismatch repair MUTS family Acife_2072 SM00100 Cyclic nucleotide-monophosphate binding domain Acife_2072 SM00419 helix_turn_helix, cAMP Regulatory protein Acife_2078 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Acife_2082 SM00448 cheY-homologous receiver domain Acife_2082 SM01012 Acife_2082 Acife_2087 SM00155 Phospholipase D. Active site motifs. Acife_2088 SM00052 Putative diguanylate phosphodiesterase Acife_2088 SM00267 diguanylate cyclase Acife_2106 SM00749 bacterial OsmY and nodulation domain Acife_2119 SM00530 Helix-turn-helix XRE-family like proteins Acife_2124 SM00434 DNA Topoisomerase IV Acife_2125 SM00387 Histidine kinase-like ATPases Acife_2125 SM00433 TopoisomeraseII Acife_2126 SM00862 Transcriptional regulatory protein, C terminal Acife_2130 SM00387 Histidine kinase-like ATPases Acife_2130 SM00388 His Kinase A (phosphoacceptor) domain Acife_2131 SM00448 cheY-homologous receiver domain Acife_2131 SM00862 Transcriptional regulatory protein, C terminal Acife_2136 SM00448 cheY-homologous receiver domain Acife_2136 SM00862 Transcriptional regulatory protein, C terminal Acife_2137 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acife_2137 SM00387 Histidine kinase-like ATPases Acife_2137 SM00388 His Kinase A (phosphoacceptor) domain Acife_2154 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Acife_2154 SM00534 ATPase domain of DNA mismatch repair MUTS family Acife_2162 SM00965 Secretin and TonB N terminus short domain Acife_2166 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acife_2170 SM00563 Phosphate acyltransferases Acife_2187 SM01323 Acife_2187 Acife_2190 SM01091 Transporter associated domain Acife_2202 SM00859 Semialdehyde dehydrogenase, NAD binding domain Acife_2203 SM01329 Acife_2203 Acife_2207 SM00852 Probable molybdopterin binding domain Acife_2209 SM00849 Metallo-beta-lactamase superfamily Acife_2214 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_2220 SM00487 DEAD-like helicases superfamily Acife_2220 SM00490 helicase superfamily c-terminal domain Acife_2223 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acife_2223 SM00954 Region found in RelA / SpoT proteins Acife_2224 SM01409 Acife_2224 Acife_2225 SM00072 Guanylate kinase homologues. Acife_2229 SM00327 von Willebrand factor (vWF) type A domain Acife_2231 SM00961 Ribulose bisphosphate carboxylase, small chain Acife_2236 SM00382 ATPases associated with a variety of cellular activities Acife_2239 SM00411 bacterial (prokaryotic) histone like domain Acife_2245 SM00966 SpoVT / AbrB like domain Acife_2258 SM00487 DEAD-like helicases superfamily Acife_2266 SM00904 Riboflavin kinase Acife_2272 SM00382 ATPases associated with a variety of cellular activities Acife_2282 SM00883 Chaperonin 10 Kd subunit Acife_2289 SM00422 helix_turn_helix, mercury resistance Acife_2295 SM00829 Enoylreductase Acife_2306 SM00670 Large family of predicted nucleotide-binding domains Acife_2308 SM00382 ATPases associated with a variety of cellular activities Acife_2311 SM00481 DNA polymerase alpha chain like domain Acife_2314 SM00382 ATPases associated with a variety of cellular activities Acife_2337 SM00829 Enoylreductase Acife_2339 SM00849 Metallo-beta-lactamase superfamily Acife_2341 SM01230 Acife_2341 Acife_2346 SM00822 Acife_2346 Acife_2383 SM00400 zinc finger Acife_2383 SM00493 Acife_2383 Acife_2384 SM00463 Small MutS-related domain Acife_2384 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Acife_2384 SM00534 ATPase domain of DNA mismatch repair MUTS family Acife_2390 SM00100 Cyclic nucleotide-monophosphate binding domain Acife_2391 SM00464 Found in ATP-dependent protease La (LON) Acife_2392 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_2394 SM00363 S4 RNA-binding domain Acife_2404 SM00487 DEAD-like helicases superfamily Acife_2406 SM01211 Acife_2406 Acife_2408 SM00998 Adenylosuccinate lyase C-terminus Acife_2410 SM01130 Acife_2410 Acife_2412 SM00646 Acife_2412 Acife_2415 SM00450 Rhodanese Homology Domain Acife_2421 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Acife_2430 SM00382 ATPases associated with a variety of cellular activities Acife_2431 SM01060 Acife_2431 Acife_2436 SM00487 DEAD-like helicases superfamily Acife_2436 SM00491 Acife_2436 Acife_2444 SM00899 Acife_2444 Acife_2456 SM00327 von Willebrand factor (vWF) type A domain Acife_2464 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_2467 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_2479 SM00450 Rhodanese Homology Domain Acife_2480 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_2483 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Acife_2487 SM00387 Histidine kinase-like ATPases Acife_2487 SM00388 His Kinase A (phosphoacceptor) domain Acife_2488 SM00382 ATPases associated with a variety of cellular activities Acife_2488 SM00448 cheY-homologous receiver domain Acife_2500 SM00936 Penicillin-binding protein 5, C-terminal domain Acife_2503 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_2512 SM00960 Roadblock/LC7 domain Acife_2516 SM00563 Phosphate acyltransferases Acife_2523 SM00644 Acife_2523 Acife_2526 SM00917 LeuA allosteric (dimerisation) domain Acife_2532 SM00422 helix_turn_helix, mercury resistance Acife_2533 SM00411 bacterial (prokaryotic) histone like domain Acife_2534 SM00873 B3/4 domain Acife_2534 SM00874 tRNA synthetase B5 domain Acife_2534 SM00896 Ferredoxin-fold anticodon binding domain Acife_2539 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Acife_2548 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Acife_2548 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Acife_2549 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Acife_2559 SM00382 ATPases associated with a variety of cellular activities Acife_2576 SM00382 ATPases associated with a variety of cellular activities Acife_2585 SM01007 Class II Aldolase and Adducin N-terminal domain Acife_2589 SM00450 Rhodanese Homology Domain Acife_2602 SM00564 beta-propeller repeat Acife_2608 SM00411 bacterial (prokaryotic) histone like domain Acife_2609 SM01152 Acife_2609 Acife_2616 SM00155 Phospholipase D. Active site motifs. Acife_2641 SM00479 Acife_2641 Acife_2644 SM00849 Metallo-beta-lactamase superfamily Acife_2646 SM00316 Ribosomal protein S1-like RNA-binding domain Acife_2646 SM00322 K homology RNA-binding domain Acife_2647 SM01387 Acife_2647 Acife_2651 SM00316 Ribosomal protein S1-like RNA-binding domain Acife_2656 SM00382 ATPases associated with a variety of cellular activities Acife_2659 SM00843 Acife_2659 Acife_2661 SM00463 Small MutS-related domain Acife_2662 SM00422 helix_turn_helix, mercury resistance Acife_2666 SM00487 DEAD-like helicases superfamily Acife_2666 SM00490 helicase superfamily c-terminal domain Acife_2666 SM00982 Acife_2666 Acife_2666 SM01058 CarD-like/TRCF domain Acife_2677 SM00014 Acid phosphatase homologues Acife_2683 SM00662 RNA polymerases D Acife_2684 SM00363 S4 RNA-binding domain Acife_2684 SM01390 Acife_2684 Acife_2688 SM00316 Ribosomal protein S1-like RNA-binding domain Acife_2699 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Acife_2700 SM01374 Acife_2700 Acife_2704 SM00322 K homology RNA-binding domain Acife_2707 SM01382 Acife_2707 Acife_2707 SM01383 Acife_2707 Acife_2711 SM01403 Acife_2711 Acife_2713 SM00838 Elongation factor G C-terminus Acife_2713 SM00889 Elongation factor G, domain IV Acife_2716 SM00663 RNA polymerase I subunit A N-terminus Acife_2721 SM00649 Ribosomal protein L11/L12 Acife_2722 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Acife_2722 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Acife_2728 SM00671 Sel1-like repeats. Acife_2743 SM00947 Carbonic anhydrase Acife_2748 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Acife_2752 SM00155 Phospholipase D. Active site motifs. Acife_2758 SM01001 AIR carboxylase Acife_2763 SM00382 ATPases associated with a variety of cellular activities Acife_2767 SM01152 Acife_2767 Acife_2768 SM00729 Elongator protein 3, MiaB family, Radical SAM Acife_2768 SM00876 Biotin and Thiamin Synthesis associated domain Acife_2777 SM00479 Acife_2777 Acife_2803 SM00957 SecA DEAD-like domain Acife_2803 SM00958 SecA preprotein cross-linking domain Acife_2824 SM00842 Cell division protein FtsA Acife_2825 SM00864 Tubulin/FtsZ family, GTPase domain Acife_2825 SM00865 Tubulin/FtsZ family, C-terminal domain Acife_2830 SM00878 Biotin carboxylase C-terminal domain Acife_2840 SM00563 Phosphate acyltransferases Acife_2843 SM00822 Acife_2843 Acife_2846 SM00825 Beta-ketoacyl synthase Acife_2859 SM00382 ATPases associated with a variety of cellular activities Acife_2859 SM00448 cheY-homologous receiver domain Acife_2860 SM00387 Histidine kinase-like ATPases Acife_2860 SM00388 His Kinase A (phosphoacceptor) domain Acife_2861 SM00382 ATPases associated with a variety of cellular activities Acife_2874 SM00836 DALR anticodon binding domain Acife_2874 SM01016 Arginyl tRNA synthetase N terminal dom Acife_2877 SM00650 Ribosomal RNA adenine dimethylases Acife_2878 SM00507 HNH nucleases Acife_2880 SM00363 S4 RNA-binding domain Acife_2881 SM00382 ATPases associated with a variety of cellular activities Acife_2886 SM00382 ATPases associated with a variety of cellular activities Acife_2889 SM00855 Phosphoglycerate mutase family Acife_2890 SM00382 ATPases associated with a variety of cellular activities Acife_2890 SM00448 cheY-homologous receiver domain Acife_2892 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Acife_2892 SM00387 Histidine kinase-like ATPases Acife_2892 SM00388 His Kinase A (phosphoacceptor) domain Acife_2894 SM00478 endonuclease III Acife_2904 SM00382 ATPases associated with a variety of cellular activities Acife_2908 SM00116 Domain in cystathionine beta-synthase and other proteins. Acife_2932 SM00357 Cold shock protein domain Acife_2934 SM00052 Putative diguanylate phosphodiesterase Acife_2934 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Acife_2934 SM00091 PAS domain Acife_2934 SM00267 diguanylate cyclase Acife_2942 SM00732 Likely ribonuclease with RNase H fold. Acife_2960 SM00966 SpoVT / AbrB like domain Acife_2980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Acife_2985 SM00507 HNH nucleases Acife_2990 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Acife_2993 SM00382 ATPases associated with a variety of cellular activities Acife_3004 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Acife_3004 SM00475 5'-3' exonuclease Acife_3007 SM00411 bacterial (prokaryotic) histone like domain Acife_3008 SM00411 bacterial (prokaryotic) histone like domain Acife_3035 SM00966 SpoVT / AbrB like domain Acife_3054 SM00507 HNH nucleases Acife_3067 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Acife_3067 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Acife_3067 SM00493 Acife_3067 Acife_3081 SM00861 Transketolase, pyrimidine binding domain Acife_3085 SM00859 Semialdehyde dehydrogenase, NAD binding domain Acife_3092 SM00363 S4 RNA-binding domain Acife_3093 SM00831 Cation transporter/ATPase, N-terminus Acife_3099 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Acife_3099 SM00474 3'-5' exonuclease Acife_3099 SM00475 5'-3' exonuclease Acife_3099 SM00482 DNA polymerase A domain Acife_3105 SM00271 DnaJ molecular chaperone homology domain Acife_3108 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Acife_3108 SM00481 DNA polymerase alpha chain like domain Acife_3108 SM00483 DNA polymerase X family Acife_3132 SM00327 von Willebrand factor (vWF) type A domain Acife_3138 SM00877 Acife_3138 Acife_3139 SM00877 Acife_3139 Acife_3144 SM00961 Ribulose bisphosphate carboxylase, small chain Acife_3158 SM00052 Putative diguanylate phosphodiesterase Acife_3158 SM00267 diguanylate cyclase Acife_3174 SM00062 Bacterial periplasmic substrate-binding proteins Acife_3175 SM00382 ATPases associated with a variety of cellular activities Acife_3180 SM00344 helix_turn_helix ASNC type Acife_3184 SM00331 Sigma factor PP2C-like phosphatases Acife_3184 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Acife_3185 SM00220 Serine/Threonine protein kinases, catalytic domain Acife_3190 SM00382 ATPases associated with a variety of cellular activities Acife_3198 SM00470 ParB-like nuclease domain Acife_3201 SM01228 Acife_3201 Acife_3204 SM00852 Probable molybdopterin binding domain Acife_3214 SM00861 Transketolase, pyrimidine binding domain Acife_3215 SM00346 helix_turn_helix isocitrate lyase regulation Acife_3224 SM00507 HNH nucleases Acife_3239 SM00382 ATPases associated with a variety of cellular activities Acife_3256 SM01004 Delta-aminolevulinic acid dehydratase