locus_tag old_locus_tag gene Name start end strand product note type ID NCBI Acife_0001 Acife_0001 Acife_0001 241 1596 + Chromosomal replication initiator protein dnaA SMART: Chromosomal replication initiator%2C DnaA C-terminal%3B ATPase%2C AAA+ type%2C core~TIGRFAM: Chromosomal replication control%2C initiator DnaA~KEGG: afr:AFE_3309 chromosomal replication initiator protein DnaA~HAMAP: Chromosomal replication control%2C initiator DnaA~PFAM: Chromosomal replication control%2C initiator (DnaA)/regulator (Hda)%3B Chromosomal replication initiator%2C DnaA C-terminal gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0001 Acife_0002 Acife_0002 Acife_0002 1880 2977 + DNA polymerase III%2C beta subunit TIGRFAM: DNA polymerase III%2C beta chain~PFAM: DNA polymerase III%2C beta chain~KEGG: afr:AFE_0001 DNA polymerase III%2C beta subunit~SMART: DNA polymerase III%2C beta chain gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0002 Acife_0003 Acife_0003 Acife_0003 2979 4037 + DNA replication and repair protein recF TIGRFAM: DNA-binding%2C RecF~HAMAP: DNA replication and repair protein recF~KEGG: afr:AFE_0002 DNA replication and repair protein RecF~PFAM: RecF/RecN/SMC protein%2C N-terminal gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0003 Acife_0004 Acife_0004 Acife_0004 4034 6436 + DNA gyrase%2C B subunit TIGRFAM: DNA gyrase%2C subunit B~PFAM: DNA topoisomerase%2C type IIA%2C subunit B%2C region 2%3B ATP-binding region%2C ATPase-like%3B Toprim domain%3B DNA topoisomerase%2C type IIA%2C subunit B%2C C-terminal~KEGG: afr:AFE_0003 DNA gyrase%2C B subunit~SMART: DNA topoisomerase%2C type IIA%2C subunit B or N-terminal%3B ATP-binding region%2C ATPase-like gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0004 Acife_0005 Acife_0005 Acife_0005 6437 7249 - Ser/Thr protein phosphatase family protein manually curated~KEGG: afr:AFE_1422 Ser/Thr protein phosphatase family protein gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0005 Acife_0006 Acife_0006 Acife_0006 7313 10822 + hypothetical protein manually curated~KEGG: afr:AFE_0004 hypothetical protein gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0006 Acife_0007 Acife_0007 Acife_0007 11136 11387 - Cell division topological specificity factor TIGRFAM: Septum formation topological specificity factor MinE~HAMAP: Septum formation topological specificity factor MinE~KEGG: afr:AFE_0011 cell division topological specificity factor MinE~PFAM: Septum formation topological specificity factor MinE gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0007 Acife_0008 Acife_0008 Acife_0008 11389 12198 - septum site-determining protein MinD KEGG: afr:AFE_0012 septum site-determining protein MinD~TIGRFAM: Septum site-determining protein MinD~PFAM: Cobyrinic acid a%2Cc-diamide synthase gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0008 Acife_0009 Acife_0009 Acife_0009 12217 12948 - septum site-determining protein minC TIGRFAM: Septum formation inhibitor MinC~HAMAP: Septum formation inhibitor MinC~KEGG: afe:Lferr_0014 septum site-determining protein MinC~PFAM: Septum formation inhibitor MinC%2C C-terminal%3B Septum formation inhibitor MinC%2C N-terminal gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0009 Acife_0010 Acife_0010 Acife_0010 12978 13304 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~KEGG: afr:AFE_0014 ferredoxin gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0010 Acife_0011 Acife_0011 Acife_0011 13301 15886 - DNA topoisomerase I TIGRFAM: DNA topoisomerase I%2C bacterial-type~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain%3B DNA topoisomerase%2C type IA%2C zn finger~KEGG: afr:AFE_0015 DNA topoisomerase I~SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain%2C subgroup gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0011 Acife_0012 Acife_0012 Acife_0012 15890 16327 - Protein smg KEGG: afr:AFE_0016 smg family protein~HAMAP: Protein smg~PFAM: Protein of unknown function DUF494 gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0012 Acife_0013 Acife_0013 Acife_0013 16337 17434 - DNA protecting protein DprA KEGG: afr:AFE_0017 DNA processing protein DprA%2C putative~TIGRFAM: DNA recombination-mediator protein A~PFAM: DNA recombination-mediator protein A gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0013 Acife_0014 Acife_0014 Acife_0014 17431 18522 - Peptidoglycan-binding lysin domain-containing protein KEGG: afr:AFE_0018 LysM domain protein~PFAM: Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0014 Acife_0015 Acife_0015 Acife_0015 18584 19108 + Peptide deformylase TIGRFAM: Formylmethionine deformylase~HAMAP: Formylmethionine deformylase~KEGG: afr:AFE_0019 polypeptide deformylase~PFAM: Formylmethionine deformylase gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0015 Acife_0016 Acife_0016 Acife_0016 19101 20042 + Methionyl-tRNA formyltransferase TIGRFAM: Methionyl-tRNA formyltransferase~HAMAP: Methionyl-tRNA formyltransferase~KEGG: afr:AFE_0020 methionyl-tRNA formyltransferase~PFAM: Formyl transferase%2C N-terminal%3B Formyl transferase%2C C-terminal gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0016 Acife_0017 Acife_0017 Acife_0017 20039 21337 + sun protein KEGG: afr:AFE_0021 sun protein~TIGRFAM: Fmu%2C rRNA SAM-dependent methyltransferase~PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%3B NusB/RsmB/TIM44 gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0017 Acife_0018 Acife_0018 Acife_0018 21334 21732 + hypothetical protein KEGG: afr:AFE_0022 hypothetical protein gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0018 Acife_0019 Acife_0019 Acife_0019 21702 23915 + integral membrane sensor signal transduction histidine kinase KEGG: afe:Lferr_0024 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0019 Acife_0020 Acife_0020 Acife_0020 23937 25337 + two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family KEGG: afr:AFE_0024 nitrogen assimilation regulatory protein NtrX%2C putative~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver region gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0020 Acife_0021 Acife_0021 Acife_0021 25550 26893 + hypothetical protein KEGG: afe:Lferr_0031 hypothetical protein gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0021 Acife_0022 Acife_0022 Acife_0022 27052 28695 + methyl-accepting chemotaxis sensory transducer KEGG: ppd:Ppro_1391 methyl-accepting chemotaxis sensory transducer~PFAM: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain~SMART: Chemotaxis methyl-accepting receptor%2C signalling%3B HAMP linker domain gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0022 Acife_0023 Acife_0023 Acife_0023 28695 28820 + hypothetical protein gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0023 Acife_0024 Acife_0024 Acife_0024 28946 37516 - glycosyltransferase 36 PFAM: Glycosyltransferase 36%3B Putative carbohydrate binding%3B Glycosyltransferase 36 associated~KEGG: nit:NAL212_0278 hypothetical protein gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0024 Acife_0025 Acife_0025 Acife_0025 37711 37839 - hypothetical protein gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0025 Acife_0026 Acife_0026 Acife_0026 37905 38234 - hypothetical protein gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0026 Acife_0027 Acife_0027 Acife_0027 38467 42900 + diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B PAS fold%3B GAF~KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B PAS%3B GAF%3B PAC motif gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0027 Acife_0028 Acife_0028 Acife_0028 42966 43334 - ArsC family protein KEGG: tmz:Tmz1t_2038 arsenate reductase and related~TIGRFAM: Conserved hypothetical protein%2C ArsC related~PFAM: Arsenate reductase-like gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0028 Acife_0029 Acife_0029 Acife_0029 43331 44458 - protein of unknown function DUF185 PFAM: Protein of unknown function DUF185~KEGG: afr:AFE_0130 hypothetical protein gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0029 Acife_0030 Acife_0030 Acife_0030 44468 45208 + short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: afr:AFE_0129 oxidoreductase%2C short-chain dehydrogenase/reductase family gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0030 Acife_0031 Acife_0031 Acife_0031 45208 45597 + nitrogen-fixing NifU domain-containing protein PFAM: NIF system FeS cluster assembly%2C NifU%2C C-terminal~KEGG: afr:AFE_0128 NifU domain protein gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0031 Acife_0032 Acife_0032 Acife_0032 45594 46934 + Ribosomal protein S12 methylthiotransferase rimO SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO%3B Methylthiotransferase~KEGG: afr:AFE_0127 ribosomal protein S12 methylthiotransferase~HAMAP: Ribosomal protein S12 methylthiotransferase RimO~PFAM: Methylthiotransferase%2C N-terminal%3B Radical SAM%3B Deoxyribonuclease/rho motif-related TRAM gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0032 Acife_0033 Acife_0033 Acife_0033 46952 47311 - dihydroneopterin aldolase KEGG: afr:AFE_0126 dihydroneopterin aldolase~TIGRFAM: Dihydroneopterin aldolase%3B Dihydroneopterin aldolase subgroup~PFAM: Dihydroneopterin aldolase gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0033 Acife_0034 Acife_0034 Acife_0034 47384 47980 + Glycerol-3-phosphate acyltransferase TIGRFAM: Membrane protein YgiH~HAMAP: Protein of unknown function DUF205~KEGG: afr:AFE_0125 hypothetical protein~PFAM: Protein of unknown function DUF205 gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0034 Acife_0035 Acife_0035 Acife_0035 48009 49022 - O-sialoglycoprotein endopeptidase TIGRFAM: putative glycoprotease GCP%3B Peptidase M22%2C glycoprotease%2C subgroup~HAMAP: O-sialoglycoprotein endopeptidase~KEGG: afr:AFE_0123 O-sialoglycoprotein endopeptidase~PFAM: Peptidase M22%2C glycoprotease gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0035 Acife_0036 Acife_0036 Acife_0036 49019 49846 - protein of unknown function DUF455 PFAM: Protein of unknown function DUF455~KEGG: cti:RALTA_A1173 hypothetical protein gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0036 Acife_0037 Acife_0037 Acife_0037 49965 51476 - Pyrrolo-quinoline quinone repeat-containing protein PFAM: Pyrrolo-quinoline quinone repeat~KEGG: afr:AFE_0029 tetrathionate hydrolase gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0037 Acife_0038 Acife_0038 Acife_0038 51819 52070 + prevent-host-death family protein TIGRFAM: Prevent-host-death protein~KEGG: nde:NIDE2383 addiction module antitoxin YefM gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0038 Acife_0039 Acife_0039 Acife_0039 52067 52321 + addiction module toxin%2C Txe/YoeB family KEGG: nde:NIDE2382 addiction module toxin YoeB~TIGRFAM: Addiction module toxin%2C Txe/YoeB~PFAM: Addiction module toxin%2C Txe/YoeB gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0039 Acife_0040 Acife_0040 Acife_0040 52686 52931 + hypothetical protein KEGG: eba:ebB112 hypothetical protein gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0040 Acife_0041 Acife_0041 Acife_0041 52928 53323 + hypothetical protein KEGG: neu:NE1589 hypothetical protein gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0041 Acife_0042 Acife_0042 Acife_0042 53584 53694 - pseudogene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0042 Acife_0043 Acife_0043 Acife_0043 53782 54060 - hypothetical protein KEGG: tin:Tint_0628 hypothetical protein gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0043 Acife_0044 Acife_0044 Acife_0044 54032 54322 - protein of unknown function DUF497 PFAM: Protein of unknown function DUF497~KEGG: tin:Tint_0627 protein of unknown function DUF497 gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0044 Acife_0045 Acife_0045 Acife_0045 54500 54895 + pseudogene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0045 Acife_0046 Acife_0046 Acife_0046 55206 55649 - hypothetical protein gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0046 Acife_0047 Acife_0047 Acife_0047 55744 56160 - pseudogene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0047 Acife_0048 Acife_0048 Acife_0048 56164 56619 - hypothetical protein gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0048 Acife_0049 Acife_0049 Acife_0049 56710 57138 - NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: azo:azo3712 hypothetical protein gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0049 Acife_0050 Acife_0050 Acife_0050 57517 60603 - acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: afe:Lferr_0111 acriflavin resistance protein gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0050 Acife_0051 Acife_0051 Acife_0051 60612 61697 - efflux transporter%2C RND family%2C MFP subunit KEGG: afr:AFE_0109 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0051 Acife_0052 Acife_0052 Acife_0052 61694 63250 - RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: afr:AFE_0108 RND efflux system%2C outer membrane lipoprotein%2C NodT family~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0052 Acife_0053 Acife_0053 Acife_0053 63440 64186 + two component transcriptional regulator%2C winged helix family KEGG: afr:AFE_0107 DNA-binding response regulator~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0053 Acife_0054 Acife_0054 Acife_0054 64186 65463 + integral membrane sensor signal transduction histidine kinase KEGG: afr:AFE_0106 sensor histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0054 Acife_0055 Acife_0055 Acife_0055 65569 66834 + metal ion transporter%2C NRAMP family KEGG: afr:AFE_0105 metal ion transporter%2C NRAMP family gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0055 Acife_0056 Acife_0056 Acife_0056 66938 67648 + phage shock protein A%2C PspA PFAM: PspA/IM30~KEGG: afr:AFE_2017 PspA/IM30 family gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0056 Acife_0057 Acife_0057 Acife_0057 67650 67994 + UPF0145 protein ybjQ KEGG: afr:AFE_2788 hypothetical protein~HAMAP: UPF0145 protein ybjQ~PFAM: Uncharacterised protein family UPF0145 gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0057 Acife_0058 Acife_0058 Acife_0058 67997 68560 + hypothetical protein KEGG: afr:AFE_0467 hypothetical protein gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0058 Acife_0059 Acife_0059 Acife_0059 68533 68775 - hypothetical protein KEGG: afr:AFE_0104 hypothetical protein gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0059 Acife_0060 Acife_0060 Acife_0060 69276 69764 + Protein of unknown function DUF2495 PFAM: Protein of unknown function DUF2495~KEGG: afr:AFE_3115 hypothetical protein gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0060 Acife_0061 Acife_0061 Acife_0061 69945 71300 - hypothetical protein KEGG: afr:AFE_0137 hypothetical protein gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0061 Acife_0062 Acife_0062 Acife_0062 71356 72114 - ABC transporter related protein KEGG: nwi:Nwi_0671 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0062 Acife_0063 Acife_0063 Acife_0063 72144 73028 - ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: nwi:Nwi_0673 binding-protein dependent transport system inner membrane protein gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0063 Acife_0064 Acife_0064 Acife_0064 73131 74477 - ABC transporter sulfonate/nitrate transport system substrate-binding protein KEGG: nwi:Nwi_0674 ABC transporter sulfonate/nitrate transport system substrate-binding protein gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0064 Acife_0065 Acife_0065 Acife_0065 74837 75124 - hypothetical protein manually curated~KEGG: afe:Lferr_0430 hypothetical protein gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0065 Acife_0066 Acife_0066 Acife_0066 75141 78632 - hypothetical protein KEGG: afr:AFE_0004 hypothetical protein gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0066 Acife_0067 Acife_0067 Acife_0067 78656 78985 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~KEGG: hha:Hhal_1658 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0067 Acife_0068 Acife_0068 Acife_0068 78997 79926 - PBS lyase HEAT domain protein repeat-containing protein PFAM: PBS lyase HEAT-like repeat%3B HEAT~KEGG: bch:Bcen2424_1977 heat domain-containing protein gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0068 Acife_0069 Acife_0069 Acife_0069 79954 80187 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~KEGG: vpe:Varpa_2478 ferredoxin gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0069 Acife_0070 Acife_0070 Acife_0070 80209 81939 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal%3B Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal~KEGG: vpe:Varpa_2479 fumarate reductase/succinate dehydrogenase flavoprotein domain protein gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0070 Acife_0071 Acife_0071 Acife_0071 81940 82698 - transcriptional regulator%2C GntR family with UTRA sensor domain KEGG: cti:RALTA_B2018 transcriptional regulator GntR family~PFAM: UbiC transcription regulator-associated%3B HTH transcriptional regulator%2C GntR~SMART: HTH transcriptional regulator%2C GntR gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0071 Acife_0072 Acife_0072 Acife_0072 83364 84755 - oxygen-independent coproporphyrinogen III oxidase TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN~PFAM: HemN%2C C-terminal%3B Radical SAM~KEGG: afr:AFE_0134 oxygen-independent coproporphyrinogen III oxidase~SMART: Elongator protein 3/MiaB/NifB gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0072 Acife_0073 Acife_0073 Acife_0073 84793 85725 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: afr:AFE_0135 transcriptional regulator%2C LysR family gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0073 Acife_0074 Acife_0074 Acife_0074 85816 87318 + outer membrane porin PFAM: Outer membrane porin%2C bacterial~KEGG: afr:AFE_0137 hypothetical protein gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0074 Acife_0075 Acife_0075 Acife_0075 87446 88576 - lipopolysaccharide heptosyltransferase II KEGG: afe:Lferr_0311 lipopolysaccharide heptosyltransferase II~TIGRFAM: Lipopolysaccharide heptosyltransferase II~PFAM: Glycosyl transferase%2C family 9 gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0075 Acife_0076 Acife_0076 Acife_0076 88578 89342 - protein of unknown function DUF155 PFAM: Protein of unknown function DUF155~KEGG: afr:AFE_0139 hypothetical protein gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0076 Acife_0077 Acife_0077 Acife_0077 89346 90731 - FAD linked oxidase domain protein PFAM: FAD-linked oxidase%2C C-terminal%3B FAD linked oxidase%2C N-terminal~KEGG: afr:AFE_0140 oxidase%2C FAD-binding gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0077 Acife_0078 Acife_0078 Acife_0078 90728 91804 - Phosphoheptose isomerase TIGRFAM: RfaE bifunctional protein%2C domain II%3B Cytidyltransferase-related~HAMAP: Phosphoheptose isomerase~KEGG: afr:AFE_0141 phosphoheptose isomerase/cytidylyltransferase~PFAM: Cytidylyltransferase%3B Sugar isomerase (SIS) gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0078 Acife_0079 Acife_0079 Acife_0079 91801 92166 - UPF0102 protein yraN TIGRFAM: Uncharacterised protein family UPF0102~HAMAP: Uncharacterised protein family UPF0102~KEGG: afr:AFE_0142 conserved hypothetical protein TIGR00252~PFAM: Uncharacterised protein family UPF0102 gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0079 Acife_0080 Acife_0080 Acife_0080 92170 94014 - lipoprotein%2C putative KEGG: afr:AFE_0143 lipoprotein%2C putative gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0080 Acife_0081 Acife_0081 Acife_0081 94084 94959 + Ribosomal RNA small subunit methyltransferase I TIGRFAM: Uncharacterised protein family UPF0011~HAMAP: Ribosomal RNA small subunit methyltransferase I~KEGG: afr:AFE_0144 tetrapyrrole methylase family protein~PFAM: Tetrapyrrole methylase gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0081 Acife_0082 Acife_0082 Acife_0082 95557 96690 + Di-haem cytochrome c peroxidase PFAM: Di-haem cytochrome c peroxidase~KEGG: acr:Acry_2827 cytochrome-c peroxidase gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0082 Acife_0083 Acife_0083 Acife_0083 96794 98644 + ResB family protein PFAM: ResB-like~KEGG: afr:AFE_3112 cytochrome c-type biogenesis protein ResB gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0083 Acife_0084 Acife_0084 Acife_0084 98637 99824 + cytochrome c-type biogenesis protein CcsB KEGG: afe:Lferr_2711 cytochrome c-type biogenesis protein CcsB~TIGRFAM: Cytochrome c-type biogenesis protein CcsA~PFAM: Cytochrome c assembly protein gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0084 Acife_0085 Acife_0085 Acife_0085 100110 100313 + cold-shock DNA-binding domain protein KEGG: afr:AFE_0590 cold-shock protein~PFAM: Cold-shock protein%2C DNA-binding~SMART: Cold shock protein gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0085 Acife_0086 Acife_0086 Acife_0086 100426 100701 - hypothetical protein gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0086 Acife_0087 Acife_0087 Acife_0087 101077 105009 + diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B GAF%3B PAS fold-4~KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase~SMART: Diguanylate cyclase%2C predicted%3B GAF%3B Diguanylate phosphodiesterase%2C predicted gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0087 Acife_0088 Acife_0088 Acife_0088 105068 106558 - ribonuclease%2C Rne/Rng family KEGG: afr:AFE_2954 ribonuclease%2C Rne/Rng family~TIGRFAM: Ribonuclease E/G~PFAM: RNA-binding protein AU-1/Ribonuclease E/G%3B Ribosomal protein S1%2C RNA binding domain gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0088 Acife_0089 Acife_0089 Acife_0089 106555 107142 - Septum formation protein Maf TIGRFAM: Maf-like protein~HAMAP: Maf-like protein~KEGG: afr:AFE_2953 maf protein~PFAM: Maf-like protein gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0089 Acife_0090 Acife_0090 Acife_0090 107139 108044 - hypothetical protein KEGG: afe:Lferr_2565 hypothetical protein gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0090 Acife_0091 Acife_0091 Acife_0091 108041 108475 - hypothetical protein KEGG: afe:Lferr_2564 hypothetical protein gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0091 Acife_0092 Acife_0092 Acife_0092 108483 108956 - Ribosomal RNA large subunit methyltransferase H KEGG: afr:AFE_2950 rRNA large subunit methyltransferase~HAMAP: Ribosomal RNA large subunit methyltransferase H~PFAM: SPOUT methyltransferase%2C predicted gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0092 Acife_0093 Acife_0093 Acife_0093 108963 109319 - iojap-like protein KEGG: afr:AFE_2949 iojap-related protein~TIGRFAM: Iojap-related protein~PFAM: Iojap-related protein gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0093 Acife_0094 Acife_0094 Acife_0094 109343 109999 - nicotinate-nucleotide adenylyltransferase TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase%3B Cytidyltransferase-related~HAMAP: nicotinate-nucleotide adenylyltransferase~KEGG: afr:AFE_2948 nicotinate (nicotinamide) nucleotide adenylyltransferase~PFAM: Cytidylyltransferase gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0094 Acife_0095 Acife_0095 Acife_0095 110071 110985 - thiol:disulfide interchange protein DsbG%2C putative KEGG: afr:AFE_2947 thiol:disulfide interchange protein DsbG%2C putative gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0095 Acife_0096 Acife_0096 Acife_0096 111159 111746 + Peptide methionine sulfoxide reductase msrA TIGRFAM: Peptide methionine sulphoxide reductase MsrA~HAMAP: Peptide methionine sulphoxide reductase MsrA~KEGG: afr:AFE_2946 peptide-methionine (S)-S-oxide reductase~PFAM: Peptide methionine sulphoxide reductase MsrA gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0096 Acife_0097 Acife_0097 Acife_0097 111761 112186 + Peptide methionine sulfoxide reductase msrB TIGRFAM: Methionine sulphoxide reductase B~HAMAP: Peptide methionine sulfoxide reductase msrB~KEGG: afr:AFE_2945 methionine-R-sulfoxide reductase~PFAM: Methionine sulphoxide reductase B gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0097 Acife_0098 Acife_0098 Acife_0098 112490 113107 + hypothetical protein KEGG: afr:AFE_0961 hypothetical protein gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0098 Acife_0099 Acife_0099 Acife_0099 113191 114729 - periplasmic glucan biosynthesis protein MdoG PFAM: Glucan biosynthesis%2C periplasmic%2C MdoG C-terminal~KEGG: afr:AFE_0960 glucan biosynthesis protein D gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0099 Acife_0100 Acife_0100 Acife_0100 115170 115301 + hypothetical protein gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0100 Acife_0101 Acife_0101 Acife_0101 115292 116113 + transcriptional regulator%2C winged helix family PFAM: Signal transduction response regulator%2C C-terminal~KEGG: afe:Lferr_2550 putative winged helix family two component transcriptional regulator gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0101 Acife_0102 Acife_0102 Acife_0102 116271 116642 + hypothetical protein gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0102 Acife_0103 Acife_0103 Acife_0103 116662 117351 + MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel~KEGG: afr:AFE_2273 MotA/TolQ/ExbB proton channel family protein gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0103 Acife_0104 Acife_0104 Acife_0104 117351 117752 + Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: afr:AFE_2269 biopolymer transport protein%2C ExbD/TolR family gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0104 Acife_0105 Acife_0105 Acife_0105 117781 120186 + TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: afr:AFE_2935 TonB-dependent receptor gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0105 Acife_0106 Acife_0106 Acife_0106 120380 122779 + TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: afe:Lferr_2552 TonB-dependent receptor gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0106 Acife_0107 Acife_0107 Acife_0107 123167 123745 + hypothetical protein KEGG: afr:AFE_2942 hypothetical protein gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0107 Acife_0108 Acife_0108 Acife_0108 124081 124248 - hypothetical protein gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0108 Acife_0109 Acife_0109 Acife_0109 124453 124617 - hypothetical protein gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0109 Acife_0110 Acife_0110 Acife_0110 124852 127419 - ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC KEGG: afr:AFE_2944 cation transporting P-type ATPase~TIGRFAM: ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B ATPase%2C P-type cation-transporter%2C N-terminal%3B Haloacid dehalogenase-like hydrolase%3B ATPase%2C P-type cation-transporter%2C C-terminal gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0110 Acife_0111 Acife_0111 Acife_0111 127472 129412 - exodeoxyribonuclease V%2C alpha subunit TIGRFAM: Exodeoxyribonuclease V%2C alpha subunit~KEGG: afr:AFE_2933 exodeoxyribonuclease V%2C alpha subunit gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0111 Acife_0112 Acife_0112 Acife_0112 129409 133017 - exodeoxyribonuclease V%2C beta subunit KEGG: afr:AFE_2932 exodeoxyribonuclease V%2C beta subunit~TIGRFAM: Exodeoxyribonuclease V%2C beta subunit~PFAM: DNA helicase%2C UvrD/REP type gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0112 Acife_0113 Acife_0113 Acife_0113 133014 136406 - exodeoxyribonuclease V%2C gamma subunit KEGG: afr:AFE_2931 exodeoxyribonuclease V%2C gamma subunit~TIGRFAM: Exodeoxyribonuclease V%2C RecC subunit~PFAM: Exodeoxyribonuclease V%2C RecC subunit gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0113 Acife_0114 Acife_0114 Acife_0114 136403 137218 - Protein of unknown function DUF2063 PFAM: Protein of unknown function DUF2063~KEGG: mep:MPQ_1793 hypothetical protein gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0114 Acife_0115 Acife_0115 Acife_0115 137181 138035 - protein of unknown function DUF692 PFAM: Protein of unknown function DUF692~KEGG: tgr:Tgr7_2641 hypothetical protein gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0115 Acife_0116 Acife_0116 Acife_0116 138140 138406 - hypothetical protein gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0116 Acife_0117 Acife_0117 Acife_0117 138606 139523 - lipid A biosynthesis acyltransferase PFAM: Bacterial lipid A biosynthesis acyltransferase~KEGG: afr:AFE_0238 lipid A biosynthesis lauroyl acyltransferase gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0117 Acife_0118 Acife_0118 Acife_0118 139802 140665 + transglutaminase domain-containing protein KEGG: lch:Lcho_1854 transglutaminase domain-containing protein~PFAM: Transglutaminase-like~SMART: Transglutaminase-like gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0118 Acife_0119 Acife_0119 Acife_0119 140680 141399 + hypothetical protein KEGG: lch:Lcho_1403 hypothetical protein gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0119 Acife_0120 Acife_0120 Acife_0120 141484 142743 - Cyclopropane-fatty-acyl-phospholipid synthase PFAM: Cyclopropane-fatty-acyl-phospholipid synthase~KEGG: afr:AFE_2929 cyclopropane-fatty-acyl-phospholipid synthase gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0120 Acife_0121 Acife_0121 Acife_0121 142857 143171 - protein of unknown function DUF190 PFAM: Protein of unknown function DUF190~KEGG: afr:AFE_2927 hypothetical protein gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0121 Acife_0122 Acife_0122 Acife_0122 143182 143559 - CrcB-like protein TIGRFAM: Camphor resistance CrcB protein~HAMAP: CrcB-like protein~KEGG: afr:AFE_2926 CrcB protein%2C putative~PFAM: Camphor resistance CrcB protein gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0122 Acife_0123 Acife_0123 Acife_0123 143637 143873 - pseudogene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0123 Acife_0124 Acife_0124 Acife_0124 144020 145729 - glycosyl transferase family 39 PFAM: Glycosyl transferase%2C family 39~KEGG: afr:AFE_2925 dolichyl-phosphate-mannose-protein mannosyltransferase family protein gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0124 Acife_0125 Acife_0125 Acife_0125 145832 146015 - pseudogene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0125 Acife_0126 Acife_0126 Acife_0126 146169 146393 + hypothetical protein KEGG: axy:AXYL_06058 hypothetical protein gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0126 Acife_0127 Acife_0127 Acife_0127 146445 146744 + transcriptional regulator%2C XRE family PFAM: Helix-turn-helix type 3~KEGG: mmw:Mmwyl1_3898 helix-turn-helix domain-containing protein gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0127 Acife_0128 Acife_0128 Acife_0128 146887 148290 - glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: bam:Bamb_0758 glycosyl transferase%2C group 1 gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0128 Acife_0129 Acife_0129 Acife_0129 148287 149114 - hypothetical protein KEGG: dte:Dester_1313 methyltransferase type 11 gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0129 Acife_0130 Acife_0130 Acife_0130 149115 150632 - polysaccharide biosynthesis protein PFAM: Polysaccharide biosynthesis protein~KEGG: afr:AFE_0076 polysaccharide biosynthesis protein gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0130 Acife_0131 Acife_0131 Acife_0131 150665 150871 + hypothetical protein gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0131 Acife_0132 Acife_0132 Acife_0132 150853 151431 + peptidoglycan-associated lipoprotein KEGG: afr:AFE_0071 peptidoglycan-associated lipoprotein%2C putative~TIGRFAM: Peptidoglycan-associated lipoprotein~PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0132 Acife_0133 Acife_0133 Acife_0133 151452 152255 + tol-pal system protein YbgF KEGG: afr:AFE_0070 hypothetical protein~TIGRFAM: Tol-Pal system%2C YbgF~PFAM: Tetratricopeptide TPR-1 gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0133 Acife_0134 Acife_0134 Acife_0134 152255 152899 + Radical SAM domain protein PFAM: Radical SAM~KEGG: afr:AFE_0069 radical SAM domain protein gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0134 Acife_0135 Acife_0135 Acife_0135 152902 153591 + exsB protein KEGG: afr:AFE_0068 ExsB protein~TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis~PFAM: Queuosine synthesis-like gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0135 Acife_0136 Acife_0136 Acife_0136 153604 154875 - Protein tolB TIGRFAM: Tol-Pal system beta propeller repeat-containing protein%2C TolB~HAMAP: Tol-Pal system beta propeller repeat-containing protein%2C TolB~KEGG: afr:AFE_0067 tol-pal system beta propeller repeat protein TolB~PFAM: TolB%2C N-terminal%3B WD40-like Beta Propeller gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0136 Acife_0137 Acife_0137 Acife_0137 154868 155863 - protein TolA TIGRFAM: Tol-Pal system%2C TolA~KEGG: afr:AFE_0066 TolA protein gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0137 Acife_0138 Acife_0138 Acife_0138 155860 156270 - protein TolR KEGG: afr:AFE_0065 TolR protein~TIGRFAM: Biopolymer transport%2C TolR~PFAM: Biopolymer transport protein ExbD/TolR gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0138 Acife_0139 Acife_0139 Acife_0139 156267 156968 - protein TolQ KEGG: afr:AFE_0064 TolQ protein~TIGRFAM: Tol-Pal system%2C TolQ~PFAM: MotA/TolQ/ExbB proton channel gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0139 Acife_0140 Acife_0140 Acife_0140 156975 157397 - tol-pal system-associated acyl-CoA thioesterase KEGG: afr:AFE_0063 tol-pal system-associated acyl-CoA thioesterase~TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase%3B 4-hydroxybenzoyl-CoA thioesterase~PFAM: Thioesterase superfamily gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0140 Acife_0141 Acife_0141 Acife_0141 157387 158412 - Holliday junction ATP-dependent DNA helicase ruvB SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: DNA helicase%2C Holliday junction RuvB type~KEGG: afr:AFE_0062 Holliday junction DNA helicase RuvB~HAMAP: DNA helicase%2C Holliday junction RuvB type~PFAM: DNA helicase%2C Holliday junction RuvB type%2C C-terminal%3B ATPase%2C AAA-type%2C core%3B DNA helicase%2C Holliday junction RuvB type%2C N-terminal gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0141 Acife_0142 Acife_0142 Acife_0142 158452 159033 - Holliday junction ATP-dependent DNA helicase ruvA TIGRFAM: Bacterial DNA recombination protein RuvA~HAMAP: Holliday junction ATP-dependent DNA helicase ruvA~KEGG: afr:AFE_0061 Holliday junction DNA helicase RuvA~PFAM: DNA helicase%2C Holliday junction RuvA type%2C domain I%2C bacterial%3B DNA helicase%2C Holliday junction RuvA type%2C domain III%2C C-terminal gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0142 Acife_0143 Acife_0143 Acife_0143 159064 159609 - Crossover junction endodeoxyribonuclease ruvC TIGRFAM: Crossover junction endodeoxyribonuclease RuvC~HAMAP: Crossover junction endodeoxyribonuclease RuvC~KEGG: afe:Lferr_0061 Holliday junction resolvase~PFAM: Crossover junction endodeoxyribonuclease RuvC gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0143 Acife_0144 Acife_0144 Acife_0144 159644 160396 - UPF0082 protein yeeN TIGRFAM: Protein of unknown function DUF28~HAMAP: Protein of unknown function DUF28~KEGG: afr:AFE_0059 hypothetical protein~PFAM: Protein of unknown function DUF28 gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0144 Acife_0145 Acife_0145 Acife_0145 160471 161082 - phospholipid/glycerol acyltransferase KEGG: afr:AFE_0058 acyltransferase family protein~PFAM: Phospholipid/glycerol acyltransferase~SMART: Phospholipid/glycerol acyltransferase gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0145 Acife_0146 Acife_0146 Acife_0146 161091 162188 - Quinolinate synthase A TIGRFAM: Quinolinate synthetase A~HAMAP: Quinolinate synthase A~KEGG: afe:Lferr_0058 quinolinate synthetase~PFAM: Quinolinate synthetase A gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0146 Acife_0147 Acife_0147 Acife_0147 162274 164064 - aspartyl-tRNA synthetase KEGG: afr:AFE_0056 aspartyl-tRNA synthetase~TIGRFAM: Aspartyl-tRNA synthetase%2C class IIb%2C bacterial/mitochondrial type~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type%3B GAD domain gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0147 Acife_0148 Acife_0148 Acife_0148 164148 164408 - regulatory protein%2C FmdB family KEGG: afr:AFE_0055 hypothetical protein~TIGRFAM: Regulatory protein%2C FmdB%2C putative~PFAM: Regulatory protein%2C FmdB%2C putative gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0148 Acife_0149 Acife_0149 Acife_0149 164519 165175 + multiple antibiotic resistance (MarC)-related protein KEGG: afe:Lferr_0055 multiple antibiotic resistance (MarC)-like protein~TIGRFAM: Multiple antibiotic resistance (MarC)-related~PFAM: Multiple antibiotic resistance (MarC)-related gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0149 Acife_0150 Acife_0150 Acife_0150 165203 165532 - protein of unknown function DUF202 PFAM: Protein of unknown function DUF202~KEGG: hypothetical protein gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0150 Acife_0151 Acife_0151 Acife_0151 165956 167623 + ATP-binding cassette protein%2C ChvD family TIGRFAM: ATP-binding cassette protein%2C ChvD family~PFAM: ABC transporter-like~KEGG: afr:AFE_0036 putative ABC transporter ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0151 Acife_0152 Acife_0152 Acife_0152 167774 167908 + 50S ribosomal protein L34 TIGRFAM: Ribosomal protein L34~HAMAP: 50S ribosomal protein L34~KEGG: afr:AFE_0035 50S ribosomal protein L34~PFAM: Ribosomal protein L34 gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0152 Acife_0153 Acife_0153 Acife_0153 167912 168262 + Ribonuclease P protein component TIGRFAM: Ribonuclease P~HAMAP: Ribonuclease P~KEGG: afr:AFE_0034 ribonuclease P protein component~PFAM: Ribonuclease P gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0153 Acife_0154 Acife_0154 Acife_0154 168259 168474 + UPF0161 protein yidD TIGRFAM: Protein of unknown function DUF37~HAMAP: Protein of unknown function DUF37~KEGG: afr:AFE_0033 conserved hypothetical protein TIGR00278~PFAM: Protein of unknown function DUF37 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0154 Acife_0155 Acife_0155 Acife_0155 168490 170094 + Membrane protein oxaA TIGRFAM: Membrane insertion protein%2C OxaA/YidC%2C core%3B Membrane insertion protein%2C OxoA/YidC%2C N-terminal~HAMAP: Membrane protein oxaA~KEGG: afr:AFE_0032 inner membrane protein%2C 60 kDa~PFAM: Membrane insertion protein%2C OxaA/YidC gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0155 Acife_0156 Acife_0156 Acife_0156 170123 171478 + tRNA modification GTPase mnmE TIGRFAM: tRNA modification GTPase TrmE%3B Small GTP-binding protein~HAMAP: tRNA modification GTPase TrmE~KEGG: afr:AFE_0031 tRNA modification GTPase TrmE~PFAM: GTP-binding protein TrmE%2C N-terminal%3B GTP-binding protein%2C HSR1-related gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0156 Acife_0157 Acife_0157 Acife_0157 171588 171788 - hypothetical protein KEGG: afr:AFE_0921 hypothetical protein gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0157 Acife_0158 Acife_0158 Acife_0158 171799 173169 - metal ion transporter%2C NRAMP family KEGG: afr:AFE_0920 metal ion transporter%2C NRAMP family gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0158 Acife_0159 Acife_0159 Acife_0159 173216 173470 - pseudogene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0159 Acife_0160 Acife_0160 Acife_0160 173929 174630 - protein of unknown function DUF45 PFAM: Protein of unknown function DUF45~KEGG: mca:MCA1894 hypothetical protein gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0160 Acife_0161 Acife_0161 Acife_0161 174636 177878 - type I site-specific deoxyribonuclease%2C HsdR family TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit~PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: mca:MCA1893 type I restriction-modification system%2C R subunit~SMART: DEAD-like helicase%2C N-terminal gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0161 Acife_0162 Acife_0162 Acife_0162 178084 178821 - hypothetical protein KEGG: hypothetical protein gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0162 Acife_0163 Acife_0163 Acife_0163 178818 179987 - restriction modification system DNA specificity domain-containing protein PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~KEGG: Restriction modification system DNA specificity domain protein gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0163 Acife_0164 Acife_0164 Acife_0164 179984 181054 - hypothetical protein KEGG: dde:Dde_2497 hypothetical protein gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0164 Acife_0165 Acife_0165 Acife_0165 181051 182610 - type I restriction-modification system%2C M subunit KEGG: mca:MCA1888 type I restriction-modification system%2C M subunit~TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C M subunit~PFAM: DNA methylase%2C adenine-specific gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0165 Acife_0166 Acife_0166 Acife_0166 182607 183188 - hypothetical protein KEGG: mca:MCA1886 hypothetical protein gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0166 Acife_0167 Acife_0167 Acife_0167 183704 184480 - ABC-2 type transporter%2C NodJ family KEGG: afr:AFE_3235 ABC-2 type transporter%2C permease protein%2C NodJ family~TIGRFAM: ABC-2 type transporter%2C NodJ~PFAM: ABC-2 type transporter gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0167 Acife_0168 Acife_0168 Acife_0168 184480 185421 - ABC transporter related protein KEGG: afr:AFE_3236 ABC transporter%2C ATP-binding protein%2C NodI family~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0168 Acife_0169 Acife_0169 Acife_0169 185390 186118 - hypothetical protein KEGG: afe:Lferr_2838 hypothetical protein gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0169 Acife_0170 Acife_0170 Acife_0170 186118 186435 - ferredoxin%2C putative KEGG: afr:AFE_3238 ferredoxin%2C putative gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0170 Acife_0171 Acife_0171 Acife_0171 186508 187134 + COQ7 family protein KEGG: afr:AFE_3239 COQ7 family protein gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0171 Acife_0172 Acife_0172 Acife_0172 187139 187624 - transcriptional regulator%2C BadM/Rrf2 family KEGG: afr:AFE_3240 Rrf2 family protein~TIGRFAM: Transcriptional regulator%2C Rrf2~PFAM: Transcriptional regulator%2C Rrf2 gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0172 Acife_0173 Acife_0173 Acife_0173 187635 188060 - OsmC family protein PFAM: Peroxiredoxin%2C OsmC-like protein~KEGG: afr:AFE_3241 OsmC/Ohr family protein gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0173 Acife_0174 Acife_0174 Acife_0174 188131 188922 - Indole-3-glycerol phosphate synthase PFAM: Indole-3-glycerol phosphate synthase~KEGG: afr:AFE_3242 indole-3-glycerol phosphate synthase gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0174 Acife_0175 Acife_0175 Acife_0175 188926 189942 - Anthranilate phosphoribosyltransferase TIGRFAM: Anthranilate phosphoribosyl transferase~HAMAP: Anthranilate phosphoribosyl transferase~KEGG: afr:AFE_3243 anthranilate phosphoribosyltransferase~PFAM: Glycosyl transferase%2C family 3%3B Glycosyl transferase%2C family 3%2C N-terminal gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0175 Acife_0176 Acife_0176 Acife_0176 189939 190511 - glutamine amidotransferase of anthranilate synthase KEGG: afr:AFE_3244 para-aminobenzoate synthase glutamine amidotransferase component II~TIGRFAM: Glutamine amidotransferase of anthranilate synthase~PFAM: Glutamine amidotransferase class-I%2C C-terminal gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0176 Acife_0177 Acife_0177 Acife_0177 190736 190852 - pseudogene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0177 Acife_0178 Acife_0178 Acife_0178 190862 192442 - putative transcriptional regulator PFAM: ATPase associated with various cellular activities%2C AAA-4~KEGG: paa:Paes_2367 putative transcriptional regulator gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0178 Acife_0179 Acife_0179 Acife_0179 192451 192824 - pseudogene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0179 Acife_0180 Acife_0180 Acife_0180 192811 193071 - transcriptional regulator%2C AbrB family KEGG: syp:SYNPCC7002_A0406 AbrB family transcriptional regulator~TIGRFAM: Transcription regulator AbrB~PFAM: Transcription regulator AbrB/SpoV%2C predicted gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0180 Acife_0181 Acife_0181 Acife_0181 193123 194640 - anthranilate synthase component I KEGG: afr:AFE_3245 anthranilate synthase component I~TIGRFAM: Anthranilate synthase component I~PFAM: Chorismate binding%2C C-terminal%3B Anthranilate synthase component I%2C N-terminal gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0181 Acife_0182 Acife_0182 Acife_0182 194750 195430 - Phosphoglycolate phosphatase TIGRFAM: 2-phosphoglycolate phosphatase%2C prokaryotic%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~HAMAP: Phosphoglycolate phosphatase~KEGG: afr:AFE_3246 phosphoglycolate phosphatase~PFAM: Haloacid dehalogenase-like hydrolase gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0182 Acife_0183 Acife_0183 Acife_0183 195434 196096 - ribulose-phosphate 3-epimerase KEGG: afr:AFE_3247 ribulose-phosphate 3-epimerase~TIGRFAM: Ribulose-phosphate 3-epimerase~PFAM: Ribulose-phosphate 3-epimerase gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0183 Acife_0184 Acife_0184 Acife_0184 196161 197231 - fructose-bisphosphate aldolase%2C class II%2C Calvin cycle subtype KEGG: afr:AFE_3248 fructose-bisphosphate aldolase%2C class II~TIGRFAM: Fructose-bisphosphate aldolase%2C class II%2C Calvin cycle subtype%3B Ketose-bisphosphate aldolase%2C class-II~PFAM: Ketose-bisphosphate aldolase%2C class-II gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0184 Acife_0185 Acife_0185 Acife_0185 197340 198779 - pyruvate kinase KEGG: afr:AFE_3249 pyruvate kinase II~TIGRFAM: Pyruvate kinase~PFAM: Pyruvate kinase%2C barrel%3B Pyruvate kinase%2C alpha/beta gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0185 Acife_0186 Acife_0186 Acife_0186 198776 199981 - Phosphoglycerate kinase KEGG: afr:AFE_3250 phosphoglycerate kinase~HAMAP: Phosphoglycerate kinase~PFAM: Phosphoglycerate kinase gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0186 Acife_0187 Acife_0187 Acife_0187 199996 201012 - glyceraldehyde-3-phosphate dehydrogenase%2C type I KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase%2C type I~TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase%2C type I~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0187 Acife_0188 Acife_0188 Acife_0188 201048 203045 - transketolase KEGG: afe:Lferr_2853 transketolase~TIGRFAM: Transketolase%2C bacterial-like~PFAM: Transketolase%2C N-terminal%3B Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0188 Acife_0189 Acife_0189 Acife_0189 203071 204015 - fructose-1%2C6-bisphosphatase%2C class II KEGG: afr:AFE_3253 fructose 1%2C6-bisphosphatase II~TIGRFAM: GlpX~PFAM: GlpX gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0189 Acife_0190 Acife_0190 Acife_0190 204071 204886 - inositol monophosphatase PFAM: Inositol monophosphatase~KEGG: afr:AFE_3254 inositol monophosphatase family protein gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0190 Acife_0191 Acife_0191 Acife_0191 204913 205356 - hypothetical protein KEGG: afr:AFE_3255 hypothetical protein gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0191 Acife_0192 Acife_0192 Acife_0192 205424 206152 + Ribosomal RNA small subunit methyltransferase E manually curated~TIGRFAM: Ribosomal RNA small subunit methyltransferase E~KEGG: afr:AFE_3257 conserved hypothetical protein TIGR00046~PFAM: Ribosomal RNA small subunit methyltransferase E gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0192 Acife_0193 Acife_0193 Acife_0193 206163 207128 - Mg2 transporter protein CorA family protein PFAM: Mg2+ transporter protein%2C CorA-like~KEGG: mms:mma_0084 Mg2+/Co2+ transporter gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0193 Acife_0194 Acife_0194 Acife_0194 207368 208321 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TIGRFAM: LytB protein~HAMAP: LytB protein~KEGG: afr:AFE_3258 4-hydroxy-3-methylbut-2-enyl diphosphate reductase~PFAM: LytB protein gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0194 Acife_0195 Acife_0195 Acife_0195 208358 209896 - RmuC-domain protein PFAM: RmuC~KEGG: afe:Lferr_2859 hypothetical protein gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0195 Acife_0196 Acife_0196 Acife_0196 210026 210481 - Large-conductance mechanosensitive channel TIGRFAM: Large-conductance mechanosensitive channel~HAMAP: Large-conductance mechanosensitive channel~KEGG: afr:AFE_3260 large conductance mechanosensitive channel protein~PFAM: Large-conductance mechanosensitive channel%3B Uncharacterised protein family UPF0547 gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0196 Acife_0197 Acife_0197 Acife_0197 210602 211117 - lipoprotein%2C putative KEGG: afr:AFE_3261 lipoprotein%2C putative gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0197 Acife_0198 Acife_0198 Acife_0198 211201 214284 - acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: afr:AFE_3262 transporter%2C AcrB/AcrD/AcrF family gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0198 Acife_0199 Acife_0199 Acife_0199 214281 215411 - efflux transporter%2C RND family%2C MFP subunit KEGG: afe:Lferr_2863 RND family efflux transporter MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0199 Acife_0200 Acife_0200 Acife_0200 215408 216838 - outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afr:AFE_3265 outer membrane efflux protein gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0200 Acife_0201 Acife_0201 Acife_0201 217067 217930 + hypothetical protein KEGG: amv:ACMV_28260 hypothetical protein gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0201 Acife_0202 Acife_0202 Acife_0202 218378 218776 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: afr:AFE_3172 glyoxalase family protein gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0202 Acife_0203 Acife_0203 Acife_0203 218773 219516 + short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: afr:AFE_2801 oxidoreductase%2C short-chain dehydrogenase/reductase family gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0203 Acife_0204 Acife_0204 Acife_0204 219555 219975 + pseudogene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0204 Acife_0205 Acife_0205 Acife_0205 220080 220505 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: chl:Chy400_3543 GCN5-related N-acetyltransferase gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0205 Acife_0206 Acife_0206 Acife_0206 220812 221219 + hypothetical protein KEGG: afr:AFE_2717 hypothetical protein gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0206 Acife_0207 Acife_0207 Acife_0207 221275 221510 - pseudogene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0207 Acife_0208 Acife_0208 Acife_0208 221529 221972 - UPF0178 protein yaiI KEGG: afr:AFE_3267 YaiI/YqxD family protein~HAMAP: Protein of unknown function DUF188~PFAM: Protein of unknown function DUF188 gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0208 Acife_0209 Acife_0209 Acife_0209 222146 222469 + prevent-host-death family protein TIGRFAM: Prevent-host-death protein~KEGG: afe:Lferr_2866 prevent-host-death family protein gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0209 Acife_0210 Acife_0210 Acife_0210 222476 222907 + protein of unknown function DUF132 TIGRFAM: Protein of unknown function DUF132~KEGG: afe:Lferr_2867 nucleic acid-binding protein%2C contains PIN domain gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0210 Acife_0211 Acife_0211 Acife_0211 223148 223816 - nickel-dependent hydrogenase%2C b-type cytochrome subunit KEGG: ttu:TERTU_0138 nickel-dependent hydrogenase%2C b-type cytochrome subunit gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0211 Acife_0212 Acife_0212 Acife_0212 223820 224314 - cytochrome c prime PFAM: Cytochrome c prime~KEGG: pzu:PHZ_c1138 putative cytochrome c signal peptide protein gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0212 Acife_0213 Acife_0213 Acife_0213 224402 224719 - pseudogene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0213 Acife_0214 Acife_0214 Acife_0214 224735 225322 + pseudogene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0214 Acife_0215 Acife_0215 Acife_0215 225436 226302 + protein of unknown function DUF6 transmembrane PFAM: Protein of unknown function DUF6%2C transmembrane~KEGG: ade:Adeh_2262 hypothetical protein gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0215 Acife_0216 Acife_0216 Acife_0216 226619 227173 + hypothetical protein KEGG: afe:Lferr_2871 hypothetical protein gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0216 Acife_0217 Acife_0217 Acife_0217 227174 227920 + two component transcriptional regulator%2C winged helix family KEGG: afr:AFE_3274 transcriptional regulator OmpR%2C putative~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0217 Acife_0218 Acife_0218 Acife_0218 227917 229179 + integral membrane sensor signal transduction histidine kinase KEGG: afr:AFE_3275 osmolarity sensor protein EnvZ%2C putative~PFAM: ATP-binding region%2C ATPase-like%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0218 Acife_0219 Acife_0219 Acife_0219 229190 229528 - hypothetical protein KEGG: afr:AFE_3276 hypothetical protein gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0219 Acife_0220 Acife_0220 Acife_0220 229668 231056 + Argininosuccinate lyase TIGRFAM: Argininosuccinate lyase~HAMAP: Argininosuccinate lyase~KEGG: afr:AFE_3277 argininosuccinate lyase~PFAM: Fumarate lyase gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0220 Acife_0221 Acife_0221 Acife_0221 231053 231238 + lipoprotein%2C putative KEGG: afr:AFE_3278 lipoprotein%2C putative gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0221 Acife_0222 Acife_0222 Acife_0222 231235 232479 + diaminopimelate decarboxylase KEGG: afr:AFE_3279 diaminopimelate decarboxylase~TIGRFAM: Diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0222 Acife_0223 Acife_0223 Acife_0223 232686 234311 + Glucose-6-phosphate isomerase KEGG: afr:AFE_2924 glucose-6-phosphate isomerase~HAMAP: Phosphoglucose isomerase (PGI)~PFAM: Phosphoglucose isomerase (PGI) gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0223 Acife_0224 Acife_0224 Acife_0224 234456 235625 + peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 PFAM: Peptidase S11%2C D-alanyl-D-alanine carboxypeptidase A%3B Peptidase S11%2C D-Ala-D-Ala carboxypeptidase A%2C C-terminal~KEGG: afr:AFE_2923 D-alanyl-D-alanine carboxypeptidase gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0224 Acife_0225 Acife_0225 Acife_0225 235750 236364 - Glutathione S-transferase domain-containing protein PFAM: Glutathione S-transferase%2C C-terminal%3B Glutathione S-transferase%2C N-terminal~KEGG: afr:AFE_2594 glutathione S-transferase gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0225 Acife_0226 Acife_0226 Acife_0226 236432 237034 - Flavoprotein wrbA TIGRFAM: Flavoprotein WrbA~HAMAP: Flavoprotein wrbA~KEGG: afr:AFE_0460 TrpR binding protein WrbA~PFAM: Flavodoxin/nitric oxide synthase gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0226 Acife_0227 Acife_0227 Acife_0227 237119 237496 + transcriptional regulator%2C HxlR family PFAM: Helix-turn-helix%2C HxlR type~KEGG: afr:AFE_0198 transcriptional regulator gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0227 Acife_0228 Acife_0228 Acife_0228 237553 238206 + YceI family protein PFAM: Lipid/polyisoprenoid-binding%2C YceI-like~KEGG: afr:AFE_0461 YceI-like family protein gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0228 Acife_0229 Acife_0229 Acife_0229 238314 238559 - glutaredoxin PFAM: Glutaredoxin~KEGG: afr:AFE_2449 hypothetical protein gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0229 Acife_0230 Acife_0230 Acife_0230 238581 238787 - Heavy metal transport/detoxification protein PFAM: Heavy metal transport/detoxification protein~KEGG: afr:AFE_1862 heavy metal-binding protein%2C putative gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0230 Acife_0231 Acife_0231 Acife_0231 238850 239245 - protein of unknown function DUF302 PFAM: Protein of unknown function DUF302~KEGG: afr:AFE_2447 hypothetical protein gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0231 Acife_0232 Acife_0232 Acife_0232 239274 241775 - heavy metal translocating P-type ATPase KEGG: hna:Hneap_0924 heavy metal translocating P-type ATPase~TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P type%2C cation/copper-transporter%3B Copper ion-binding%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase-like hydrolase gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0232 Acife_0233 Acife_0233 Acife_0233 242256 243503 + Ion transport 2 domain protein PFAM: Ion transport 2%3B Regulator of K+ conductance%2C N-terminal~KEGG: afe:Lferr_2537 voltage-gated potassium channel gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0233 Acife_0234 Acife_0234 Acife_0234 243500 243808 + hypothetical protein KEGG: afe:Lferr_2536 hypothetical protein gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0234 Acife_0235 Acife_0235 Acife_0235 243789 244829 - rare lipoprotein A KEGG: afr:AFE_2921 rare lipoprotein A%2C putative~TIGRFAM: Rare lipoprotein A%2C bacterial~PFAM: Rare lipoprotein A gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0235 Acife_0236 Acife_0236 Acife_0236 245135 245509 - 17 kDa surface antigen PFAM: Rickettsia 17kDa surface antigen~KEGG: afr:AFE_2919 lipoprotein%2C putative gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0236 Acife_0237 Acife_0237 Acife_0237 245751 246137 + lipoprotein%2C putative KEGG: afr:AFE_2918 lipoprotein%2C putative gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0237 Acife_0238 Acife_0238 Acife_0238 246263 246976 - glutamine amidotransferase class-I PFAM: Glutamine amidotransferase class-I%2C C-terminal~KEGG: afr:AFE_2917 glutamine amidotransferase class-I domain protein gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0238 Acife_0239 Acife_0239 Acife_0239 246973 248778 - diguanylate cyclase/phosphodiesterase with GAF sensor TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B GAF~KEGG: tgr:Tgr7_3175 sensory box protein~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B GAF gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0239 Acife_0240 Acife_0240 Acife_0240 248912 250339 - ammonium transporter KEGG: afo:Afer_1995 ammonium transporter~TIGRFAM: Ammonium transporter~PFAM: Ammonium transporter gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0240 Acife_0241 Acife_0241 Acife_0241 250416 251546 - Sulfate transporter/antisigma-factor antagonist STAS PFAM: Sulphate transporter/antisigma-factor antagonist STAS~KEGG: nhl:Nhal_2889 ABC-type phosphate/phosphonate transport system periplasmic component gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0241 Acife_0242 Acife_0242 Acife_0242 251533 254082 - putative PAS/PAC sensor protein TIGRFAM: PAS~PFAM: Sporulation stage II%2C protein E C-terminal%3B PAS fold-4~KEGG: gur:Gura_1513 stage II sporulation E family protein~SMART: Protein phosphatase 2C-related%3B PAS gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0242 Acife_0243 Acife_0243 Acife_0243 254439 255743 - ammonium transporter KEGG: afr:AFE_2916 ammonium transporter~TIGRFAM: Ammonium transporter~PFAM: Ammonium transporter gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0243 Acife_0244 Acife_0244 Acife_0244 255799 256137 - nitrogen regulatory protein P-II PFAM: Nitrogen regulatory protein PII~KEGG: afr:AFE_2915 nitrogen regulatory protein P-II 2 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0244 Acife_0245 Acife_0245 Acife_0245 256192 257370 - hypothetical protein KEGG: afr:AFE_2914 hypothetical protein gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0245 Acife_0246 Acife_0246 Acife_0246 257552 259027 - SpoVR family protein PFAM: Sporulation stage V%2C protein R~KEGG: afr:AFE_2913 SpoVR family protein gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0246 Acife_0247 Acife_0247 Acife_0247 259020 260324 - protein of unknown function DUF444 PFAM: Protein of unknown function DUF444~KEGG: afr:AFE_2912 hypothetical protein gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0247 Acife_0248 Acife_0248 Acife_0248 260426 261742 - ammonium transporter KEGG: afr:AFE_2911 ammonium transporter~TIGRFAM: Ammonium transporter~PFAM: Ammonium transporter gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0248 Acife_0249 Acife_0249 Acife_0249 262027 263961 - putative serine protein kinase%2C PrkA KEGG: afr:AFE_2910 hypothetical protein~PFAM: PrkA AAA%3B PrkA serine kinase~SMART: PrkA AAA gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0249 Acife_0250 Acife_0250 Acife_0250 264366 264545 + hypothetical protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0250 Acife_0251 Acife_0251 Acife_0251 264542 265486 + Cache domain protein PFAM: Cache~KEGG: slo:Shew_3768 hypothetical protein gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0251 Acife_0252 Acife_0252 Acife_0252 265518 268880 - Protein of unknown function DUF2126 KEGG: afr:AFE_2907 transglutaminase-like domain protein~PFAM: Protein of unknown function DUF2126%3B Bacterial transglutaminase-like%2C N-terminal%3B Transglutaminase-like~SMART: Transglutaminase-like gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0252 Acife_0253 Acife_0253 Acife_0253 268923 269909 - protein of unknown function DUF403 PFAM: Protein of unknown function DUF403%2C bacteria~KEGG: afr:AFE_2906 hypothetical protein gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0253 Acife_0254 Acife_0254 Acife_0254 269894 271357 - protein of unknown function DUF404 PFAM: Protein of unknown function DUF404%2C bacteria N-terminal%3B Protein of unknown function DUF407~KEGG: afr:AFE_2905 hypothetical protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0254 Acife_0255 Acife_0255 Acife_0255 271660 272406 - 20S proteasome A and B subunits PFAM: Proteasome%2C subunit alpha/beta~KEGG: afr:AFE_2903 hypothetical protein gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0255 Acife_0256 Acife_0256 Acife_0256 272716 273801 + signal transduction histidine kinase%2C nitrogen specific%2C NtrB KEGG: afr:AFE_2902 nitrogen regulation protein NR(II)~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B PAS fold-4~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0256 Acife_0257 Acife_0257 Acife_0257 273798 275240 + nitrogen metabolism transcriptional regulator%2C NtrC%2C Fis Family TIGRFAM: Signal transduction response regulator%2C nitrogen regulation NR(I)~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C Fis-type~KEGG: afr:AFE_2901 nitrogen regulation protein NR(I)~SMART: Signal transduction response regulator%2C receiver region%3B ATPase%2C AAA+ type%2C core gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0257 Acife_0258 Acife_0258 Acife_0258 275295 276260 + hypothetical protein KEGG: afr:AFE_2900 hypothetical protein gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0258 Acife_0259 Acife_0259 Acife_0259 276374 277342 + Polyprenyl synthetase PFAM: Polyprenyl synthetase~KEGG: afr:AFE_2899 octaprenyl-diphosphate synthase gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0259 Acife_0260 Acife_0260 Acife_0260 277755 279815 + O-antigen polymerase PFAM: O-antigen ligase-related~KEGG: afr:AFE_2896 O-antigen polymerase family protein gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0260 Acife_0261 Acife_0261 Acife_0261 279853 281607 + penicillin-binding protein transpeptidase PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain~KEGG: afr:AFE_2895 peptidoglycan synthetase FtsI %2C putative gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0261 Acife_0262 Acife_0262 Acife_0262 281604 281915 + hypothetical protein KEGG: afe:Lferr_2514 hypothetical protein gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0262 Acife_0263 Acife_0263 Acife_0263 281908 282231 + hypothetical protein KEGG: afe:Lferr_2513 hypothetical protein gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0263 Acife_0264 Acife_0264 Acife_0264 282228 284099 - ABC transporter related protein KEGG: afr:AFE_2893 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0264 Acife_0265 Acife_0265 Acife_0265 284198 284548 - hypothetical protein KEGG: afr:AFE_2891 hypothetical protein gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0265 Acife_0266 Acife_0266 Acife_0266 284727 285632 + phage SPO1 DNA polymerase-related protein KEGG: afr:AFE_2882 uracil-DNA glycosylase family 4 protein~TIGRFAM: Phage SPO1 DNA polymerase-related protein~PFAM: Uracil-DNA glycosylase-like gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0266 Acife_0267 Acife_0267 Acife_0267 285712 286413 + lipolytic protein G-D-S-L family PFAM: Lipase%2C GDSL~KEGG: bsa:Bacsa_0892 alpha-L-fucosidase gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0267 Acife_0268 Acife_0268 Acife_0268 286389 286607 - pseudogene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0268 Acife_0269 Acife_0269 Acife_0269 286679 287260 - hypothetical protein gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0269 Acife_0270 Acife_0270 Acife_0270 287290 288246 - glycoside hydrolase family 24 PFAM: Glycoside hydrolase%2C family 24~KEGG: xbo:XBJ1_0278 putative rhs accessory genetic element gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0270 Acife_0271 Acife_0271 Acife_0271 288263 289183 - TadE family protein PFAM: TadE-like~KEGG: reh:H16_A0987 flp pilus assembly protein TadG gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0271 Acife_0272 Acife_0272 Acife_0272 289173 290888 - type II secretion system protein E PFAM: Type II secretion system protein E~KEGG: hna:Hneap_2309 FHA domain containing protein gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0272 Acife_0273 Acife_0273 Acife_0273 290900 292255 - type II and III secretion system protein PFAM: Type II/III secretion system~KEGG: hna:Hneap_2310 type II and III secretion system protein gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0273 Acife_0274 Acife_0274 Acife_0274 292272 293333 - Flp pilus assembly protein CpaB TIGRFAM: Pilus assembly%2C Flp-type CpaB~KEGG: bph:Bphy_4344 Flp pilus assembly protein CpaB gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0274 Acife_0275 Acife_0275 Acife_0275 293343 293510 - hypothetical protein gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0275 Acife_0276 Acife_0276 Acife_0276 293522 294196 - hypothetical protein KEGG: hna:Hneap_2313 hypothetical protein gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0276 Acife_0277 Acife_0277 Acife_0277 294197 294937 - hypothetical protein KEGG: swd:Swoo_0753 hypothetical protein gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0277 Acife_0278 Acife_0278 Acife_0278 295018 295986 - hypothetical protein gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0278 Acife_0279 Acife_0279 Acife_0279 296003 297634 - hypothetical protein KEGG: saz:Sama_0702 hypothetical protein gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0279 Acife_0280 Acife_0280 Acife_0280 297728 298006 - hypothetical protein KEGG: swd:Swoo_0756 hypothetical protein gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0280 Acife_0281 Acife_0281 Acife_0281 298348 299565 - OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: avi:Avi_7144 OmpA family protein gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0281 Acife_0282 Acife_0282 Acife_0282 299571 300260 - regulatory protein LuxR PFAM: Transcription regulator LuxR%2C C-terminal~SMART: Transcription regulator LuxR%2C C-terminal gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0282 Acife_0283 Acife_0283 Acife_0283 300599 301450 + Type II secretion system F domain-containing protein PFAM: Type II secretion system F domain~KEGG: hna:Hneap_2308 type II secretion system F domain protein gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0283 Acife_0284 Acife_0284 Acife_0284 301447 302328 + Type II secretion system F domain-containing protein PFAM: Type II secretion system F domain~KEGG: reh:H16_A0985 flp pilus assembly protein TadC gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0284 Acife_0285 Acife_0285 Acife_0285 302325 302675 + protein of unknown function DUF192 PFAM: Protein of unknown function DUF192~KEGG: afr:AFE_2872 hypothetical protein gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0285 Acife_0286 Acife_0286 Acife_0286 302736 302984 + prevent host death protein KEGG: afr:AFE_0414 prevent host death protein gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0286 Acife_0287 Acife_0287 Acife_0287 302987 303367 + PIN domain protein KEGG: tmz:Tmz1t_1573 PIN domain protein gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0287 Acife_0288 Acife_0288 Acife_0288 303660 303758 + pseudogene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0288 Acife_0289 Acife_0289 Acife_0289 303908 305284 + signal recognition particle protein TIGRFAM: Signal recognition particle%2C SRP~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle%3B Signal recognition particle%2C SRP54 subunit%2C M-domain~KEGG: afr:AFE_2856 signal recognition particle protein~SMART: ATPase%2C AAA+ type%2C core gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0289 Acife_0290 Acife_0290 Acife_0290 305355 305615 + 30S ribosomal protein S16 TIGRFAM: Ribosomal protein S16~HAMAP: Ribosomal protein S16~KEGG: afr:AFE_2855 30S ribosomal protein S16~PFAM: Ribosomal protein S16 gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0290 Acife_0291 Acife_0291 Acife_0291 305602 306114 + Ribosome maturation factor rimM PFAM: RimM protein%3B PRC-barrel~manually curated~TIGRFAM: 16S rRNA processing protein RimM~KEGG: afr:AFE_2854 16S rRNA processing protein RimM~HAMAP: 16S rRNA processing protein RimM gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0291 Acife_0292 Acife_0292 Acife_0292 306114 306857 + tRNA (guanine-N(1)-)-methyltransferase TIGRFAM: tRNA (guanine-N1-)-methyltransferase%2C bacteria~HAMAP: tRNA (guanine-N1-)-methyltransferase%2C bacteria~KEGG: afr:AFE_2853 tRNA (guanine-N1)-methyltransferase~PFAM: tRNA (guanine-N1-)-methyltransferase gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0292 Acife_0293 Acife_0293 Acife_0293 306879 307223 + 50S ribosomal protein L19 TIGRFAM: Ribosomal protein L19~HAMAP: Ribosomal protein L19~KEGG: afr:AFE_2852 ribosomal protein L19~PFAM: Ribosomal protein L19 gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0293 Acife_0294 Acife_0294 Acife_0294 307248 308483 + hypothetical protein KEGG: afe:Lferr_2472 hypothetical protein gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0294 Acife_0295 Acife_0295 Acife_0295 308530 309444 + Tyrosine recombinase xerD TIGRFAM: Tyrosine recombinase XerD~HAMAP: Tyrosine recombinase xerD~KEGG: afr:AFE_2850 tyrosine recombinase XerD~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0295 Acife_0296 Acife_0296 Acife_0296 309571 311088 - protease Do TIGRFAM: Peptidase S1C%2C Do~PFAM: PDZ/DHR/GLGF%3B Peptidase S1/S6%2C chymotrypsin/Hap~KEGG: afr:AFE_2849 serine protease%2C DO/DeqQ family~SMART: PDZ/DHR/GLGF gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0296 Acife_0297 Acife_0297 Acife_0297 311228 312097 - thioredoxin KEGG: afr:AFE_2848 thioredoxin%2C putative~TIGRFAM: Thioredoxin~PFAM: Thioredoxin domain gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0297 Acife_0298 Acife_0298 Acife_0298 312212 312766 - hypothetical protein KEGG: afe:Lferr_2468 hypothetical protein gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0298 Acife_0299 Acife_0299 Acife_0299 312833 315709 - UvrABC system protein A TIGRFAM: Excinuclease ABC%2C A subunit~HAMAP: UvrABC system protein A~KEGG: afr:AFE_2847 excinuclease ABC%2C A subunit~PFAM: ABC transporter-like gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0299 Acife_0300 Acife_0300 Acife_0300 315724 316197 + single-strand binding protein KEGG: afr:AFE_2845 single-strand binding protein~TIGRFAM: Single-strand DNA-binding~PFAM: Primosome PriB/single-strand DNA-binding gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0300 Acife_0301 Acife_0301 Acife_0301 316595 318214 + N-6 DNA methylase PFAM: DNA methylase%2C adenine-specific~KEGG: geb:GM18_2872 adenine-specific DNA-methyltransferase gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0301 Acife_0302 Acife_0302 Acife_0302 318214 319296 + restriction modification system DNA specificity domain-containing protein PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~KEGG: cph:Cpha266_1710 restriction modification system DNA specificity subunit gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0302 Acife_0303 Acife_0303 Acife_0303 319289 319897 + hypothetical protein KEGG: vvy:VV1821 hypothetical protein gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0303 Acife_0304 Acife_0304 Acife_0304 320027 320635 + hypothetical protein KEGG: pca:Pcar_0280 hypothetical protein gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0304 Acife_0305 Acife_0305 Acife_0305 320635 321627 + Domain of unknown function DUF1814 PFAM: Protein of unknown function DUF1814~KEGG: pca:Pcar_0281 hypothetical protein gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0305 Acife_0306 Acife_0306 Acife_0306 321608 324787 + type I site-specific deoxyribonuclease%2C HsdR family TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit~PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: geb:GM18_2869 type I site-specific deoxyribonuclease%2C HsdR family~SMART: DEAD-like helicase%2C N-terminal gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0306 Acife_0307 Acife_0307 Acife_0307 324963 325151 - hypothetical protein KEGG: afr:AFE_2844 hypothetical protein gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0307 Acife_0308 Acife_0308 Acife_0308 325321 326613 + protein of unknown function DUF445 PFAM: Protein of unknown function DUF445%2C transmembrane~KEGG: afr:AFE_2843 hypothetical protein gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0308 Acife_0309 Acife_0309 Acife_0309 326619 327467 - Glutamate racemase TIGRFAM: Glutamate racemase~HAMAP: Glutamate racemase~KEGG: afr:AFE_2842 glutamate racemase~PFAM: Asp/Glu/hydantoin racemase gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0309 Acife_0310 Acife_0310 Acife_0310 327467 328414 - ROK family protein PFAM: ROK~KEGG: afr:AFE_2841 ROK family protein gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0310 Acife_0311 Acife_0311 Acife_0311 328407 330425 - Domain of unknown function DUF1926 PFAM: Alpha-amylase/4-alpha-glucanotransferase%2C prokaryotic%3B Domain of unknown function DUF1925%3B Glycoside hydrolase%2C family 57%2C core~KEGG: afr:AFE_2840 glycosyl hydrolase%2C family 57 gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0311 Acife_0312 Acife_0312 Acife_0312 330426 332129 - glycoside hydrolase family 57 PFAM: Glycoside hydrolase%2C family 57%2C core~KEGG: afr:AFE_2839 glycosyl hydrolase%2C family 57 gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0312 Acife_0313 Acife_0313 Acife_0313 332134 333441 - Glucose-1-phosphate adenylyltransferase TIGRFAM: Glucose-1-phosphate adenylyltransferase~HAMAP: Glucose-1-phosphate adenylyltransferase~KEGG: afr:AFE_2838 glucose-1-phosphate adenylyltransferase~PFAM: Nucleotidyl transferase gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0313 Acife_0314 Acife_0314 Acife_0314 333681 335888 + 1%2C4-alpha-glucan-branching enzyme SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~TIGRFAM: 1%2C4-alpha-glucan branching enzyme%2C core region~KEGG: afe:Lferr_2458 1%2C4-alpha-glucan branching protein~HAMAP: 1%2C4-alpha-glucan branching enzyme%2C core region~PFAM: Alpha-amylase%2C C-terminal all beta%3B Glycoside hydrolase%2C family 13%2C N-terminal%3B Glycosyl hydrolase%2C family 13%2C catalytic region gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0314 Acife_0315 Acife_0315 Acife_0315 335885 336364 + hypothetical protein KEGG: afr:AFE_2835 hypothetical protein gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0315 Acife_0316 Acife_0316 Acife_0316 336340 337269 + band 7 protein KEGG: afr:AFE_2834 SPFH/band 7 domain protein~PFAM: Band 7 protein~SMART: Band 7 protein gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0316 Acife_0317 Acife_0317 Acife_0317 337344 338054 - 6-phosphogluconolactonase TIGRFAM: 6-phosphogluconolactonase~KEGG: afr:AFE_2833 6-phosphogluconolactonase gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0317 Acife_0318 Acife_0318 Acife_0318 338140 339078 + cysteine synthase KEGG: afr:AFE_2832 cysteine synthase B~TIGRFAM: Cysteine synthase K/M%3B Cysteine synthase B~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0318 Acife_0319 Acife_0319 Acife_0319 339086 341146 + hypothetical protein KEGG: afe:Lferr_2453 hypothetical protein gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0319 Acife_0320 Acife_0320 Acife_0320 341151 341834 + hypothetical protein KEGG: afe:Lferr_2452 hypothetical protein gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0320 Acife_0321 Acife_0321 Acife_0321 341819 342652 + 3'-5' exonuclease%2C PolB-like protein PFAM: 3'-5' exonuclease%2C PolB-like~KEGG: afe:Lferr_2451 hypothetical protein gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0321 Acife_0322 Acife_0322 Acife_0322 342627 343949 + 23S rRNA (uracil-5-)-methyltransferase rumA TIGRFAM: 23S rRNA methyltransferase/RumA~HAMAP: 23S rRNA (uracil-5-)-methyltransferase rumA~KEGG: afr:AFE_2828 23S rRNA (uracil-5-)-methyltransferase~PFAM: Methyltransferase type 11%3B Deoxyribonuclease/rho motif-related TRAM gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0322 Acife_0323 Acife_0323 Acife_0323 343951 344469 + ErfK/YbiS/YcfS/YnhG family protein PFAM: YkuD domain~KEGG: afr:AFE_2827 ErfK/YbiS/YcfS/YnhG family protein gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0323 Acife_0324 Acife_0324 Acife_0324 344470 346599 + hypothetical protein KEGG: afr:AFE_2826 hypothetical protein gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0324 Acife_0325 Acife_0325 Acife_0325 346583 347647 + glycoside hydrolase family 3 domain protein PFAM: Glycoside hydrolase%2C family 3%2C N-terminal~KEGG: afr:AFE_2825 beta-hexosaminidase gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0325 Acife_0326 Acife_0326 Acife_0326 347772 348176 + 30S ribosomal protein S6 TIGRFAM: Ribosomal protein S6~HAMAP: Ribosomal protein S6%2C bacterial-like~KEGG: afr:AFE_2824 30S ribosomal protein S6~PFAM: Ribosomal protein S6%2C bacterial-like gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0326 Acife_0327 Acife_0327 Acife_0327 348192 348470 + 30S ribosomal protein S18 TIGRFAM: Ribosomal protein S18~HAMAP: 30S ribosomal protein S18~KEGG: afr:AFE_2823 ribosomal protein S18~PFAM: Ribosomal protein S18 gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0327 Acife_0328 Acife_0328 Acife_0328 348486 349403 + Protein of unknown function DUF2232%2C membrane PFAM: Protein of unknown function DUF2232%2C membrane~KEGG: afe:Lferr_2444 hypothetical protein gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0328 Acife_0329 Acife_0329 Acife_0329 349441 349887 + 50S ribosomal protein L9 TIGRFAM: Ribosomal protein L9%2C bacteria/chloroplast~HAMAP: Ribosomal protein L9%2C bacteria/chloroplast~KEGG: afr:AFE_2820 50S ribosomal protein L9~PFAM: Ribosomal protein L9%2C N-terminal%3B Ribosomal protein L9%2C C-terminal gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0329 Acife_0330 Acife_0330 Acife_0330 349913 351286 + replicative DNA helicase TIGRFAM: DNA helicase%2C DnaB type~PFAM: DNA helicase%2C DnaB-like%2C C-terminal%3B DNA helicase%2C DnaB-like%2C N-terminal~KEGG: afr:AFE_2819 replicative DNA helicase~SMART: ATPase%2C AAA+ type%2C core gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0330 Acife_0331 Acife_0331 Acife_0331 351349 352443 + Alanine racemase TIGRFAM: Alanine racemase~HAMAP: Alanine racemase~KEGG: afr:AFE_2818 alanine racemase~PFAM: Alanine racemase%2C N-terminal%3B Alanine racemase%2C C-terminal gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0331 Acife_0332 Acife_0332 Acife_0332 352440 353798 + DNA repair protein RadA KEGG: afr:AFE_2817 DNA repair protein RadA~TIGRFAM: DNA repair protein RadA~SMART: ATPase%2C AAA+ type%2C core gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0332 Acife_0333 Acife_0333 Acife_0333 353970 354407 + hypothetical protein KEGG: afr:AFE_2816 hypothetical protein gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0333 Acife_0334 Acife_0334 Acife_0334 354571 355914 + peptidase M24 PFAM: Peptidase M24%2C structural domain%3B Peptidase M24B%2C X-Pro dipeptidase/aminopeptidase P N-terminal~KEGG: afr:AFE_2815 Xaa-Pro aminopeptidase gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0334 Acife_0335 Acife_0335 Acife_0335 355944 356516 - hypothetical protein KEGG: afe:Lferr_2437 hypothetical protein gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0335 Acife_0336 Acife_0336 Acife_0336 356920 357225 + lipoprotein%2C putative KEGG: afr:AFE_2811 lipoprotein%2C putative gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0336 Acife_0337 Acife_0337 Acife_0337 357347 359791 - phosphoketolase KEGG: afr:AFE_2053 putative phosphoketolase~HAMAP: phosphoketolase~PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase%2C N-terminal%3B Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase%3B Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase%2C C-terminal gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0337 Acife_0338 Acife_0338 Acife_0338 359892 360224 - hypothetical protein manually curated~KEGG: afe:Lferr_0218 hypothetical protein gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0338 Acife_0339 Acife_0339 Acife_0339 360262 360681 - Protein of unknown function DUF2078%2C membrane PFAM: Protein of unknown function DUF2078%2C membrane~KEGG: afe:Lferr_0219 hypothetical protein gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0339 Acife_0340 Acife_0340 Acife_0340 360860 361337 + pseudogene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0340 Acife_0341 Acife_0341 Acife_0341 361379 361708 + ISAfe4%2C tranposase orf1 KEGG: afr:AFE_1709 ISAfe4%2C tranposase orf1 gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0341 Acife_0342 Acife_0342 Acife_0342 361699 361989 + IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2 like~KEGG: afr:AFE_2938 ISAfe4%2C transposase orf2 gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0342 Acife_0343 Acife_0343 Acife_0343 362190 362819 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: gca:Galf_2491 integrase family protein gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0343 Acife_0344 Acife_0344 Acife_0344 363060 363344 + hypothetical protein gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0344 Acife_0345 Acife_0345 Acife_0345 363417 363956 + hypothetical protein KEGG: tde:TDE0384 hypothetical protein gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0345 Acife_0346 Acife_0346 Acife_0346 363989 364432 + hypothetical protein KEGG: bac:BamMC406_6709 hypothetical protein gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0346 Acife_0347 Acife_0347 Acife_0347 364715 365119 - hypothetical protein gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0347 Acife_0348 Acife_0348 Acife_0348 365112 365372 - hypothetical protein manually curated~KEGG: hypothetical protein gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0348 Acife_0349 Acife_0349 Acife_0349 365632 366360 - hypothetical protein gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0349 Acife_0350 Acife_0350 Acife_0350 366436 366927 - hypothetical protein gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0350 Acife_0351 Acife_0351 Acife_0351 367333 367731 - integrase domain protein SAM domain protein PFAM: Integrase%2C N-terminal SAM-like%2C phage~KEGG: pol:Bpro_4806 phage integrase gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0351 Acife_0352 Acife_0352 Acife_0352 368096 368602 - hypothetical protein gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0352 Acife_0353 Acife_0353 Acife_0353 368599 369690 - protein of unknown function DUF262 PFAM: Protein of unknown function DUF262~KEGG: dly:Dehly_0806 hypothetical protein gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0353 Acife_0354 Acife_0354 Acife_0354 370045 370770 - FMN-binding pyridoxamine 5'-phosphate oxidase-related protein PFAM: Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain%3B Protein of unknown function DUF2470~KEGG: tin:Tint_2978 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0354 Acife_0355 Acife_0355 Acife_0355 371356 371919 - MscS Mechanosensitive ion channel PFAM: Mechanosensitive ion channel MscS~KEGG: afr:AFE_1549 hypothetical protein gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0355 Acife_0356 Acife_0356 Acife_0356 372235 372318 + pseudogene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0356 Acife_0357 Acife_0357 Acife_0357 372709 373437 + short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: tin:Tint_2798 short-chain dehydrogenase/reductase SDR gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0357 Acife_0358 Acife_0358 Acife_0358 373461 374198 + hypothetical protein KEGG: afr:AFE_1582 hypothetical protein gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0358 Acife_0359 Acife_0359 Acife_0359 374241 374750 - histone family protein DNA-binding protein KEGG: afr:AFE_0905 integration host factor%2C beta subunit~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0359 Acife_0360 Acife_0360 Acife_0360 374851 375084 - hypothetical protein gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0360 Acife_0361 Acife_0361 Acife_0361 375129 375524 + pseudogene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0361 Acife_0362 Acife_0362 Acife_0362 375716 375988 + hypothetical protein gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0362 Acife_0363 Acife_0363 Acife_0363 375988 376677 + hypothetical protein KEGG: hypothetical protein gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0363 Acife_0364 Acife_0364 Acife_0364 376688 377023 + pseudogene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0364 Acife_0365 Acife_0365 Acife_0365 377262 377657 - hypothetical protein gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0365 Acife_0366 Acife_0366 Acife_0366 378645 383939 + DEAD/DEAH box helicase domain protein KEGG: gpb:HDN1F_07060 DEAD/DEAH box helicase~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal%3B Protein of unknown function DUF1998~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0366 Acife_0367 Acife_0367 Acife_0367 383936 386713 + helicase domain-containing protein KEGG: gpb:HDN1F_07070 superfamily II DNA/RNA helicases%2C SNF2 family~PFAM: DNA/RNA helicase%2C C-terminal%3B SNF2-related~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0367 Acife_0368 Acife_0368 Acife_0368 386753 386974 + prevent-host-death family protein KEGG: afr:AFE_0085 prevent-host-death family protein gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0368 Acife_0369 Acife_0369 Acife_0369 386974 387387 + hypothetical protein KEGG: afr:AFE_0086 hypothetical protein gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0369 Acife_0370 Acife_0370 Acife_0370 387384 391403 + hypothetical protein KEGG: gpb:HDN1F_07090 hypothetical protein gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0370 Acife_0371 Acife_0371 Acife_0371 391400 391831 + hypothetical protein KEGG: mar:MAE_15010 hypothetical protein gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0371 Acife_0372 Acife_0372 Acife_0372 391828 394590 + hypothetical protein KEGG: syn:sll1563 hypothetical protein gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0372 Acife_0373 Acife_0373 Acife_0373 394604 395227 + RNA ligase domain%2C REL/Rln2 KEGG: nit:NAL212_1258 RNA ligase domain%2C REL/Rln2 gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0373 Acife_0374 Acife_0374 Acife_0374 395430 395705 + plasmid maintenance system killer PFAM: Plasmid maintenance system killer~KEGG: afr:AFE_0088 plasmid maintenance system killer protein gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0374 Acife_0375 Acife_0375 Acife_0375 395722 396039 + putative plasmid maintenance system antidote protein%2C XRE family TIGRFAM: Addiction module antidote protein%2C HigA~KEGG: afr:AFE_0089 DNA-binding protein%2C putative gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0375 Acife_0376 Acife_0376 Acife_0376 396074 396856 + hypothetical protein KEGG: nit:NAL212_1257 hypothetical protein gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0376 Acife_0377 Acife_0377 Acife_0377 397325 397534 + hypothetical protein gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0377 Acife_0378 Acife_0378 Acife_0378 397834 398730 - protein of unknown function DUF6 transmembrane PFAM: Protein of unknown function DUF6%2C transmembrane~KEGG: dde:Dde_1146 hypothetical protein gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0378 Acife_0379 Acife_0379 Acife_0379 398723 399313 - DinB family protein PFAM: DinB~KEGG: tin:Tint_2723 DinB family protein gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0379 Acife_0380 Acife_0380 Acife_0380 399673 399882 - hypothetical protein KEGG: afe:Lferr_0197 hypothetical protein gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0380 Acife_0381 Acife_0381 Acife_0381 399879 400292 - hypothetical protein KEGG: afe:Lferr_0198 hypothetical protein gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0381 Acife_0382 Acife_0382 Acife_0382 400847 402043 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: sil:SPO3481 hypothetical protein gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0382 Acife_0383 Acife_0383 Acife_0383 402117 402584 - protein of unknown function DUF1348 PFAM: Protein of unknown function DUF1348~KEGG: aba:Acid345_2217 hypothetical protein gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0383 Acife_0384 Acife_0384 Acife_0384 402782 403288 + regulatory protein TetR PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: pol:Bpro_2654 TetR family transcriptional regulator gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0384 Acife_0385 Acife_0385 Acife_0385 403296 403614 + pseudogene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0385 Acife_0386 Acife_0386 Acife_0386 403611 405089 - DNA repair protein and transcriptional regulator%2C AraC family KEGG: afr:AFE_2799 transcriptional regulator%2C Ada family/DNA-3-methyladenine glycosylase II~PFAM: AlkA%2C N-terminal%3B Ada DNA repair%2C metal-binding%3B Helix-turn-helix%2C AraC type%3B HhH-GPD domain~SMART: Helix-turn-helix%2C AraC domain%3B HhH-GPD domain gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0386 Acife_0387 Acife_0387 Acife_0387 405265 405402 + hypothetical protein gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0387 Acife_0388 Acife_0388 Acife_0388 405382 405572 - pseudogene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0388 Acife_0389 Acife_0389 Acife_0389 405591 406004 - hypothetical protein KEGG: afr:AFE_2797 hypothetical protein gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0389 Acife_0390 Acife_0390 Acife_0390 406114 406794 + regulatory protein ArsR SMART: HTH transcriptional regulator%2C ArsR~KEGG: afr:AFE_2796 transcriptional regulator%2C ArsR family gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0390 Acife_0391 Acife_0391 Acife_0391 406983 407600 + hypothetical protein manually curated~KEGG: bbt:BBta_p0031 hypothetical protein gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0391 Acife_0392 Acife_0392 Acife_0392 407672 408373 - hypothetical protein KEGG: afe:Lferr_0254 TIR (toll-interleukin 1-resistance) domain-containing protein-like protein gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0392 Acife_0393 Acife_0393 Acife_0393 408569 408904 - hypothetical protein gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0393 Acife_0394 Acife_0394 Acife_0394 408971 409969 - hypothetical protein gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0394 Acife_0395 Acife_0395 Acife_0395 410056 410343 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911~KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0395 Acife_0396 Acife_0396 Acife_0396 410340 411224 + Integrase catalytic region KEGG: pna:Pnap_0429 integrase catalytic subunit~manually curated~PFAM: Integrase%2C catalytic core gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0396 Acife_0397 Acife_0397 Acife_0397 411440 411589 - hypothetical protein gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0397 Acife_0398 Acife_0398 Acife_0398 412124 413035 + restriction endonuclease PFAM: Restriction endonuclease%2C type IV-like%2C Mrr%3B DNA topoisomerase%2C type IA%2C zn finger~KEGG: afr:AFE_2769 restriction endonuclease%2C putative gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0398 Acife_0399 Acife_0399 Acife_0399 413153 413230 - pseudogene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0399 Acife_0400 Acife_0400 Acife_0400 413236 413364 + hypothetical protein gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0400 Acife_0401 Acife_0401 Acife_0401 413373 413996 - hypothetical protein KEGG: slt:Slit_1749 hypothetical protein gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0401 Acife_0402 Acife_0402 Acife_0402 414671 415765 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ppw:PputW619_3971 integrase family protein gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0402 Acife_0403 Acife_0403 Acife_0403 415994 417001 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: nhl:Nhal_0956 integrase family protein gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0403 Acife_0404 Acife_0404 Acife_0404 416994 417224 - hypothetical protein gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0404 Acife_0405 Acife_0405 Acife_0405 417377 417481 - hypothetical protein gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0405 Acife_0406 Acife_0406 Acife_0406 417474 417743 - hypothetical protein KEGG: afr:AFE_0865 hypothetical protein gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0406 Acife_0407 Acife_0407 Acife_0407 417797 419284 - hypothetical protein gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0407 Acife_0408 Acife_0408 Acife_0408 419284 419469 - hypothetical protein gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0408 Acife_0409 Acife_0409 Acife_0409 419456 419674 - pseudogene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0409 Acife_0410 Acife_0410 Acife_0410 419676 419903 - hypothetical protein gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0410 Acife_0411 Acife_0411 Acife_0411 420046 421002 - hypothetical protein KEGG: vpe:Varpa_2758 hypothetical protein gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0411 Acife_0412 Acife_0412 Acife_0412 421448 421876 - helix-turn-helix domain protein KEGG: axy:AXYL_02046 helix-turn-helix family protein 5~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0412 Acife_0413 Acife_0413 Acife_0413 421931 422140 + pseudogene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0413 Acife_0414 Acife_0414 Acife_0414 422545 422958 - putative zinc finger/helix-turn-helix protein%2C YgiT family KEGG: app:CAP2UW1_0226 XRE family transcriptional regulator~TIGRFAM: putative zinc finger/helix-turn-helix protein%2C YgiT family~SMART: Helix-turn-helix type 3 gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0414 Acife_0415 Acife_0415 Acife_0415 422960 423262 - hypothetical protein KEGG: app:CAP2UW1_0225 hypothetical protein gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0415 Acife_0416 Acife_0416 Acife_0416 423394 423825 + hypothetical protein gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0416 Acife_0417 Acife_0417 Acife_0417 423830 424123 + protein of unknown function DUF1376 PFAM: Protein of unknown function DUF1376 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0417 Acife_0418 Acife_0418 Acife_0418 424110 424331 + hypothetical protein gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0418 Acife_0419 Acife_0419 Acife_0419 424334 425332 + hypothetical protein KEGG: brh:RBRH_01223 replication protein 15 gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0419 Acife_0420 Acife_0420 Acife_0420 425344 426183 + IstB domain protein ATP-binding protein KEGG: afr:AFE_1566 DNA replication protein DnaC%2C putative~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0420 Acife_0421 Acife_0421 Acife_0421 426180 426650 + hypothetical protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0421 Acife_0422 Acife_0422 Acife_0422 426654 427121 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: gox:GOX2634 conjugal transfer protein TrbN gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0422 Acife_0423 Acife_0423 Acife_0423 427118 427741 + IcmL (DotI) KEGG: lpa:lpa_00690 IcmL (DotI) gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0423 Acife_0424 Acife_0424 Acife_0424 427754 428854 + hypothetical protein KEGG: cbd:CBUD_0370 IcmK gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0424 Acife_0425 Acife_0425 Acife_0425 428844 430070 + conjugation TrbI family protein PFAM: Bacterial conjugation TrbI-like protein~KEGG: lpn:lpg0451 IcmE (DotG) gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0425 Acife_0426 Acife_0426 Acife_0426 430081 430638 + RNA polymerase sigma factor%2C sigma-70 family TIGRFAM: RNA polymerase sigma-70 gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0426 Acife_0427 Acife_0427 Acife_0427 430719 431330 + hypothetical protein KEGG: bvi:Bcep1808_7573 hypothetical protein gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0427 Acife_0428 Acife_0428 Acife_0428 431346 431855 + hypothetical protein KEGG: lpa:lpa_00698 hypothetical protein gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0428 Acife_0429 Acife_0429 Acife_0429 431965 432186 + protein of unknown function DUF433 PFAM: Protein of unknown function DUF433~KEGG: slt:Slit_0677 hypothetical protein gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0429 Acife_0430 Acife_0430 Acife_0430 432186 432518 + hypothetical protein KEGG: slt:Slit_0676 hypothetical protein gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0430 Acife_0431 Acife_0431 Acife_0431 432520 432636 + pseudogene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0431 Acife_0432 Acife_0432 Acife_0432 432967 433915 - pseudogene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0432 Acife_0433 Acife_0433 Acife_0433 434146 434547 + hypothetical protein KEGG: rme:Rmet_3350 hypothetical protein gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0433 Acife_0434 Acife_0434 Acife_0434 434620 436137 + hypothetical protein KEGG: mfa:Mfla_2624 hypothetical protein gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0434 Acife_0435 Acife_0435 Acife_0435 436377 439085 + AAA ATPase SMART: ATPase%2C AAA+ type%2C core~KEGG: gsu:GSU0763 helicase gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0435 Acife_0436 Acife_0436 Acife_0436 439875 440333 + hypothetical protein gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0436 Acife_0437 Acife_0437 Acife_0437 440343 443339 + hypothetical protein KEGG: mea:Mex_2p0509 hypothetical protein gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0437 Acife_0438 Acife_0438 Acife_0438 443414 446083 + domain of unknown function DUF1738 PFAM: Domain of unknown function DUF1738~KEGG: afe:Lferr_0235 hypothetical protein gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0438 Acife_0439 Acife_0439 Acife_0439 446165 446779 + hypothetical protein gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0439 Acife_0440 Acife_0440 Acife_0440 446776 447321 + hypothetical protein gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0440 Acife_0441 Acife_0441 Acife_0441 447308 448405 + hypothetical protein KEGG: cbs:COXBURSA331_A1817 IcmP protein gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0441 Acife_0442 Acife_0442 Acife_0442 448402 450555 + hypothetical protein KEGG: mpt:Mpe_B0057 hypothetical protein gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0442 Acife_0443 Acife_0443 Acife_0443 450753 451751 + transcriptional regulator%2C LysR family KEGG: tkm:TK90_0873 transcriptional regulator%2C LysR family~manually curated~PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0443 Acife_0444 Acife_0444 Acife_0444 451907 453601 + NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%3B NADH:ubiquinone oxidoreductase%2C chain 5/L%2C N-terminal~KEGG: hna:Hneap_0212 NADH dehydrogenase (quinone) gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0444 Acife_0445 Acife_0445 Acife_0445 453598 456009 + UPF0753 protein KEGG: hna:Hneap_0211 protein of unknown function DUF2309~HAMAP: UPF0753 protein~PFAM: Protein of unknown function DUF2309 gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0445 Acife_0446 Acife_0446 Acife_0446 456086 457159 + hypothetical protein KEGG: afr:AFE_1659 hypothetical protein gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0446 Acife_0447 Acife_0447 Acife_0447 457189 458067 + hypothetical protein KEGG: mep:MPQ_2045 hypothetical protein gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0447 Acife_0448 Acife_0448 Acife_0448 458213 458758 + hypothetical protein KEGG: syp:SYNPCC7002_A2097 dihydroorotase gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0448 Acife_0449 Acife_0449 Acife_0449 458822 459655 + hypothetical protein gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0449 Acife_0450 Acife_0450 Acife_0450 460132 460623 + transcriptional regulator%2C MarR family KEGG: gvi:glr2761 MarR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0450 Acife_0451 Acife_0451 Acife_0451 460731 460958 + Iron sulfur domain-containing%2C CDGSH-type PFAM: Iron sulphur domain-containing%2C CDGSH-type~KEGG: nde:NIDE0017 hypothetical protein gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0451 Acife_0452 Acife_0452 Acife_0452 460992 461636 + YceI family protein PFAM: Lipid/polyisoprenoid-binding%2C YceI-like~KEGG: afr:AFE_0461 YceI-like family protein gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0452 Acife_0453 Acife_0453 Acife_0453 461697 462575 + hypothetical protein KEGG: mme:Marme_3300 hypothetical protein gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0453 Acife_0454 Acife_0454 Acife_0454 462607 463059 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: fri:FraEuI1c_6011 glyoxalase/bleomycin resistance protein/dioxygenase gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0454 Acife_0455 Acife_0455 Acife_0455 463115 463342 + hypothetical protein KEGG: rah:Rahaq_4843 carboxylyase gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0455 Acife_0456 Acife_0456 Acife_0456 463861 466488 + diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~KEGG: tin:Tint_2563 diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0456 Acife_0457 Acife_0457 Acife_0457 466598 469257 + pseudogene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0457 Acife_0458 Acife_0458 Acife_0458 469257 469439 + hypothetical protein gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0458 Acife_0459 Acife_0459 Acife_0459 469445 470659 - Rhodopirellula transposase family protein PFAM: Transposase%2C Rhodopirellula-type~KEGG: eba:ebA5952 hypothetical protein gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0459 Acife_0460 Acife_0460 Acife_0460 470682 471746 + transposase IS116/IS110/IS902 family protein PFAM: Transposase%2C IS116/IS110/IS902~KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0460 Acife_0461 Acife_0461 Acife_0461 471819 473524 - pseudogene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0461 Acife_0462 Acife_0462 Acife_0462 473775 473990 + hypothetical protein KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0462 Acife_0463 Acife_0463 Acife_0463 474008 474202 - pseudogene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0463 Acife_0464 Acife_0464 Acife_0464 474522 474771 - pseudogene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0464 Acife_0465 Acife_0465 Acife_0465 474896 475348 + pseudogene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0465 Acife_0466 Acife_0466 Acife_0466 475395 476186 + protein of unknown function DUF481 PFAM: Protein of unknown function DUF481~KEGG: afr:AFE_2054 hypothetical protein gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0466 Acife_0467 Acife_0467 Acife_0467 476359 476601 + prevent-host-death family protein TIGRFAM: Prevent-host-death protein~KEGG: mci:Mesci_2093 prevent-host-death family protein gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0467 Acife_0468 Acife_0468 Acife_0468 476598 476993 + PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: mag:amb1706 hypothetical protein gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0468 Acife_0469 Acife_0469 Acife_0469 477071 477415 + heavy metal efflux system protein%2C putative KEGG: afr:AFE_2428 heavy metal efflux system protein%2C putative gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0469 Acife_0470 Acife_0470 Acife_0470 477635 478204 + rusticyanin KEGG: afr:AFE_3146 rusticyanin~TIGRFAM: Rusticyanin~PFAM: Blue (type 1) copper domain gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0470 Acife_0471 Acife_0471 Acife_0471 478335 478634 + hypothetical protein KEGG: afr:AFE_2495 hypothetical protein gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0471 Acife_0472 Acife_0472 Acife_0472 478658 479065 + hypothetical protein KEGG: afr:AFE_2494 hypothetical protein gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0472 Acife_0473 Acife_0473 Acife_0473 479270 479422 + hypothetical protein gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0473 Acife_0474 Acife_0474 Acife_0474 479419 480285 + hypothetical protein KEGG: afr:AFE_2498 hypothetical protein gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0474 Acife_0475 Acife_0475 Acife_0475 480423 481636 + pseudogene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0475 Acife_0476 Acife_0476 Acife_0476 482119 483822 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: eba:p2A213 transposase gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0476 Acife_0477 Acife_0477 Acife_0477 484026 484202 + hypothetical protein KEGG: ajs:Ajs_1976 transposase IS116/IS110/IS902 family protein gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0477 Acife_0478 Acife_0478 Acife_0478 484326 484836 + pseudogene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0478 Acife_0479 Acife_0479 Acife_0479 485238 485840 + plasmid pRiA4b ORF-3 family protein PFAM: Plasmid pRiA4b ORF-3-like~KEGG: bps:BPSS2075 hypothetical protein gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0479 Acife_0480 Acife_0480 Acife_0480 485894 486397 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: afr:AFE_2467 acetyltransferase%2C GNAT family gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0480 Acife_0481 Acife_0481 Acife_0481 486431 487903 + pseudogene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0481 Acife_0482 Acife_0482 Acife_0482 488101 488619 - hypothetical protein KEGG: afe:Lferr_0754 periplasmic solute-binding protein gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0482 Acife_0483 Acife_0483 Acife_0483 489075 490451 + natural resistance-associated macrophage protein KEGG: afe:Lferr_0157 natural resistance-associated macrophage protein gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0483 Acife_0484 Acife_0484 Acife_0484 490462 490677 + hypothetical protein KEGG: afe:Lferr_0156 hypothetical protein gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0484 Acife_0485 Acife_0485 Acife_0485 490830 491954 + Carbohydrate-selective porin OprB PFAM: Carbohydrate-selective porin OprB~KEGG: afr:AFE_2250 carbohydrate-selective porin%2C OprB family gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0485 Acife_0486 Acife_0486 Acife_0486 492041 492748 + MgtC/SapB transporter PFAM: MgtC/SapB transporter~KEGG: afe:Lferr_0155 MgtC/SapB transporter gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0486 Acife_0487 Acife_0487 Acife_0487 492931 493188 + Acyl carrier protein TIGRFAM: Acyl carrier protein (ACP)~HAMAP: Acyl carrier protein (ACP)~KEGG: afr:AFE_1909 acyl carrier protein~PFAM: Phosphopantetheine-binding gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0487 Acife_0488 Acife_0488 Acife_0488 493224 493340 + pseudogene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0488 Acife_0489 Acife_0489 Acife_0489 493346 493807 - transcriptional regulator%2C MerR family TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~KEGG: afr:AFE_2421 Cd(II)/Pb(II)-responsive transcriptional regulator~SMART: HTH transcriptional regulator%2C MerR gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0489 Acife_0490 Acife_0490 Acife_0490 493907 494863 + cation diffusion facilitator family transporter KEGG: afr:AFE_2420 cation diffusion facilitator family transporter~TIGRFAM: Cation efflux protein~PFAM: Cation efflux protein gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0490 Acife_0491 Acife_0491 Acife_0491 495102 495749 + cation efflux protein KEGG: afr:AFE_2424 cation efflux permease%2C putative~manually curated~PFAM: Cation efflux protein gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0491 Acife_0492 Acife_0492 Acife_0492 496363 497514 + aminotransferase class V PFAM: Aminotransferase%2C class V/Cysteine desulfurase~KEGG: afe:Lferr_0188 class V aminotransferase gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0492 Acife_0493 Acife_0493 Acife_0493 497518 497631 + pseudogene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0493 Acife_0494 Acife_0494 Acife_0494 497774 499099 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: afe:Lferr_0195 FAD-dependent pyridine nucleotide-disulfide oxidoreductase gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0494 Acife_0495 Acife_0495 Acife_0495 499233 500870 - Tetratricopeptide TPR_2 repeat-containing protein PFAM: Tetratricopeptide TPR2%3B Tetratricopeptide TPR-1~KEGG: afe:Lferr_0200 TPR repeat-containing protein gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0495 Acife_0496 Acife_0496 Acife_0496 501109 502299 - hypothetical protein KEGG: afr:AFE_2463 hypothetical protein gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0496 Acife_0497 Acife_0497 Acife_0497 502455 502733 + hypothetical protein gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0497 Acife_0498 Acife_0498 Acife_0498 503269 504579 + outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afe:Lferr_0170 outer membrane efflux protein gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0498 Acife_0499 Acife_0499 Acife_0499 504576 506012 + efflux transporter%2C RND family%2C MFP subunit KEGG: afr:AFE_2433 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0499 Acife_0500 Acife_0500 Acife_0500 506005 509115 + heavy metal efflux pump%2C CzcA family KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0500 Acife_0501 Acife_0501 Acife_0501 509141 509887 + cytochrome b561 KEGG: afe:Lferr_0173 cytochrome b561 gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0501 Acife_0502 Acife_0502 Acife_0502 510015 510377 + hypothetical protein KEGG: afe:Lferr_0174 hypothetical protein gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0502 Acife_0503 Acife_0503 Acife_0503 510495 510803 + hypothetical protein KEGG: afe:Lferr_2056 hypothetical protein gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0503 Acife_0504 Acife_0504 Acife_0504 511333 511590 + pseudogene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0504 Acife_0505 Acife_0505 Acife_0505 512118 512330 - hypothetical protein gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0505 Acife_0506 Acife_0506 Acife_0506 512751 514475 - hypothetical protein KEGG: ade:Adeh_0726 hypothetical protein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0506 Acife_0507 Acife_0507 Acife_0507 514620 515012 + hypothetical protein gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0507 Acife_0508 Acife_0508 Acife_0508 515026 515346 + hypothetical protein gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0508 Acife_0509 Acife_0509 Acife_0509 515343 515807 + hypothetical protein gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0509 Acife_0510 Acife_0510 Acife_0510 515779 517050 + hypothetical protein KEGG: xcv:XCVd0030 putative secreted protein gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0510 Acife_0511 Acife_0511 Acife_0511 517063 517188 + hypothetical protein gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0511 Acife_0512 Acife_0512 Acife_0512 517212 517847 + hypothetical protein gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0512 Acife_0513 Acife_0513 Acife_0513 517844 518128 + hypothetical protein gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0513 Acife_0514 Acife_0514 Acife_0514 518132 520375 + hypothetical protein KEGG: rme:Rmet_2827 putative TraY/DotA-like type IV secretion system protein gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0514 Acife_0515 Acife_0515 Acife_0515 520417 520635 + hypothetical protein gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0515 Acife_0516 Acife_0516 Acife_0516 520710 522416 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: eba:p2A221 transposase gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0516 Acife_0517 Acife_0517 Acife_0517 522695 524389 - transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: eba:p2A221 transposase gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0517 Acife_0518 Acife_0518 Acife_0518 524686 527415 - conjugative relaxase domain protein KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit~TIGRFAM: Conjugative relaxase region%2C N-terminal~PFAM: TrwC relaxase gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0518 Acife_0519 Acife_0519 Acife_0519 527657 527845 + hypothetical protein gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0519 Acife_0520 Acife_0520 Acife_0520 528016 531555 - SMC domain protein KEGG: dba:Dbac_1053 SMC domain protein gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0520 Acife_0521 Acife_0521 Acife_0521 531552 532817 - metallophosphoesterase PFAM: Metallophosphoesterase~KEGG: scl:sce7166 DNA repair exonuclease family protein gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0521 Acife_0522 Acife_0522 Acife_0522 532934 533170 + DNA binding domain protein%2C excisionase family KEGG: tmz:Tmz1t_0957 excision promoter%2C Xis~TIGRFAM: Excisionase/Xis%2C DNA-binding~PFAM: HTH transcriptional regulator%2C MerR gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0522 Acife_0523 Acife_0523 Acife_0523 533167 536361 + helicase domain-containing protein KEGG: gpb:HDN1F_22900 helicase%2C C-terminal domain~PFAM: DNA/RNA helicase%2C C-terminal%3B SNF2-related~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0523 Acife_0524 Acife_0524 Acife_0524 536358 537143 + hypothetical protein KEGG: gpb:HDN1F_22910 hypothetical protein gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0524 Acife_0525 Acife_0525 Acife_0525 537170 539155 + DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6~KEGG: dac:Daci_4205 DNA methylase N-4/N-6 domain-containing protein gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0525 Acife_0526 Acife_0526 Acife_0526 539158 540343 + pseudogene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0526 Acife_0527 Acife_0527 Acife_0527 540340 543327 + type III restriction protein res subunit PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: gpb:HDN1F_22930 type III restriction enzyme%2C res subunit gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0527 Acife_0528 Acife_0528 Acife_0528 543407 543640 - hypothetical protein gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0528 Acife_0529 Acife_0529 Acife_0529 543749 544915 - diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: psa:PST_3126 GGDEF domain-containing protein~SMART: Diguanylate cyclase%2C predicted gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0529 Acife_0530 Acife_0530 Acife_0530 545212 546495 - P4 alpha zinc-binding domain protein KEGG: lhk:LHK_02469 hypothetical protein~PFAM: Phage P4 alpha%2C zinc-binding~SMART: Phage P4 alpha%2C zinc-binding gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0530 Acife_0531 Acife_0531 Acife_0531 546529 547095 - hypothetical protein gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0531 Acife_0532 Acife_0532 Acife_0532 547107 547634 - hypothetical protein gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0532 Acife_0533 Acife_0533 Acife_0533 547631 548614 - StbA family protein PFAM: StbA~KEGG: mea:Mex_2p0044 hypothetical protein gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0533 Acife_0534 Acife_0534 Acife_0534 548618 549232 - hypothetical protein gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0534 Acife_0535 Acife_0535 Acife_0535 549229 549489 - hypothetical protein gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0535 Acife_0536 Acife_0536 Acife_0536 549645 550352 - hypothetical protein KEGG: amv:ACMV_28150 hypothetical protein gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0536 Acife_0537 Acife_0537 Acife_0537 550529 550831 - hypothetical protein KEGG: afr:AFE_1243 hypothetical protein gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0537 Acife_0538 Acife_0538 Acife_0538 550843 551220 - 17 kDa surface antigen PFAM: Rickettsia 17kDa surface antigen~KEGG: afr:AFE_2919 lipoprotein%2C putative gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0538 Acife_0539 Acife_0539 Acife_0539 551260 551541 - hypothetical protein gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0539 Acife_0540 Acife_0540 Acife_0540 551553 551825 - hypothetical protein gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0540 Acife_0541 Acife_0541 Acife_0541 551818 552993 - type II secretion system protein E KEGG: cbs:COXBURSA331_A1833 Dot/Icm secretion system ATPase DotB~PFAM: Type II secretion system protein E~SMART: ATPase%2C AAA+ type%2C core gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0541 Acife_0542 Acife_0542 Acife_0542 552990 553727 - hypothetical protein KEGG: bvi:Bcep1808_7636 hypothetical protein gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0542 Acife_0543 Acife_0543 Acife_0543 553731 554222 - hypothetical protein KEGG: lpc:LPC_0463 lipoprotein DotD gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0543 Acife_0544 Acife_0544 Acife_0544 554528 555475 - ribose-phosphate pyrophosphokinase KEGG: afr:AFE_2766 ribose-phosphate pyrophosphokinase~TIGRFAM: Phosphoribosyl pyrophosphokinase~PFAM: Phosphoribosyltransferase gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0544 Acife_0545 Acife_0545 Acife_0545 555604 556449 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~KEGG: afr:AFE_2764 4-diphosphocytidyl-2C-methyl-D-erythritol kinase~PFAM: GHMP kinase%3B GHMP kinase%2C C-terminal gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0545 Acife_0546 Acife_0546 Acife_0546 556446 557102 - outer membrane lipoprotein LolB KEGG: afr:AFE_2763 outer membrane lipoprotein LolB%2C putative~TIGRFAM: Outer membrane lipoprotein LolB~PFAM: Outer membrane lipoprotein LolB gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0546 Acife_0547 Acife_0547 Acife_0547 557099 558760 - TPR domain protein KEGG: afr:AFE_2762 TPR domain protein gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0547 Acife_0548 Acife_0548 Acife_0548 558831 560147 + Glutamyl-tRNA reductase PFAM: Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C N-terminal%3B Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase%3B Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C C-terminal~manually curated~TIGRFAM: Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase~KEGG: afr:AFE_2761 glutamyl-tRNA reductase~HAMAP: Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0548 Acife_0549 Acife_0549 Acife_0549 560144 561241 + Peptide chain release factor 1 TIGRFAM: Peptide chain release factor 1~HAMAP: Peptide chain release factor 1~KEGG: afr:AFE_2760 peptide chain release factor 1~PFAM: Class I peptide chain release factor%3B Peptide chain release factor gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0549 Acife_0550 Acife_0550 Acife_0550 561231 562097 + protein-(glutamine-N5) methyltransferase%2C release factor-specific KEGG: afr:AFE_2759 modification methylase%2C HemK family~TIGRFAM: Protein-(glutamine-N5) methyltransferase%2C release factor-specific%3B Modification methylase HemK~PFAM: Methyltransferase small gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0550 Acife_0551 Acife_0551 Acife_0551 562100 562912 + Formamidopyrimidine-DNA glycosylase TIGRFAM: DNA glycosylase/AP lyase~HAMAP: Formamidopyrimidine-DNA glycosylase~KEGG: afr:AFE_2758 formamidopyrimidine-DNA glycosylase~PFAM: DNA glycosylase/AP lyase%2C catalytic domain%3B DNA glycosylase/AP lyase%2C H2TH DNA-binding gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0551 Acife_0552 Acife_0552 Acife_0552 562929 564908 + GTP-binding protein HSR1-related protein PFAM: GTP-binding protein%2C HSR1-related~KEGG: afr:AFE_2756 hypothetical protein gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0552 Acife_0553 Acife_0553 Acife_0553 564892 565143 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~KEGG: afr:AFE_2757 iron-sulfur cluster-binding protein gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0553 Acife_0554 Acife_0554 Acife_0554 565172 565696 - Phosphopantetheine adenylyltransferase TIGRFAM: Coenzyme A biosynthesis protein%3B Cytidyltransferase-related~HAMAP: Coenzyme A biosynthesis protein~KEGG: afr:AFE_2755 pantetheine-phosphate adenylyltransferase~PFAM: Cytidylyltransferase gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0554 Acife_0555 Acife_0555 Acife_0555 565689 566258 - methyltransferase KEGG: afr:AFE_2754 methyltransferase%2C putative~TIGRFAM: Conserved hypothetical protein CHP00095~PFAM: Protein of unknown function methylase putative gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0555 Acife_0556 Acife_0556 Acife_0556 566381 567478 + signal recognition particle-docking protein FtsY TIGRFAM: Cell division transporter substrate-binding protein FtsY~PFAM: Signal recognition particle%2C SRP54 subunit%2C GTPase%3B Signal recognition particle%2C SRP54 subunit%2C helical bundle~KEGG: afe:Lferr_2373 signal recognition particle-docking protein FtsY~SMART: ATPase%2C AAA+ type%2C core gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0556 Acife_0557 Acife_0557 Acife_0557 567475 568146 + cell division ATP-binding protein FtsE TIGRFAM: Cell division ATP-binding protein FtsE~PFAM: ABC transporter-like~KEGG: afr:AFE_2752 cell division ATP-binding protein FtsE~SMART: ATPase%2C AAA+ type%2C core gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0557 Acife_0558 Acife_0558 Acife_0558 568143 569048 + protein of unknown function DUF214 PFAM: Protein of unknown function DUF214%2C permase predicted~KEGG: afr:AFE_2751 cell division protein FtsX%2C putative gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0558 Acife_0559 Acife_0559 Acife_0559 569123 569974 + RNA polymerase%2C sigma 32 subunit%2C RpoH KEGG: afr:AFE_2750 RNA polymerase sigma-32 factor~TIGRFAM: RNA polymerase sigma factor RpoH%2C proteobacteria%3B RNA polymerase sigma-70~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 4 gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0559 Acife_0560 Acife_0560 Acife_0560 569971 570303 + hypothetical protein KEGG: afr:AFE_2749 hypothetical protein gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0560 Acife_0561 Acife_0561 Acife_0561 570325 571653 - ATP-dependent hsl protease ATP-binding subunit hslU SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Heat shock protein HslU~KEGG: afr:AFE_2748 heat shock protein HslVU%2C ATPase subunit HslU~HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU~PFAM: ATPase associated with various cellular activities%2C AAA-2%3B Clp ATPase%2C C-terminal gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0561 Acife_0562 Acife_0562 Acife_0562 571650 572189 - ATP-dependent protease hslV TIGRFAM: ATP-dependent protease HslVU%2C peptidase subunit~HAMAP: ATP-dependent protease hslV~KEGG: afe:Lferr_2367 ATP-dependent protease peptidase subunit~PFAM: Proteasome%2C subunit alpha/beta gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0562 Acife_0563 Acife_0563 Acife_0563 572186 573127 - Tyrosine recombinase xerC KEGG: afr:AFE_2746 tyrosine recombinase XerC~HAMAP: Tyrosine recombinase xerC~PFAM: Integrase%2C catalytic core%2C phage%3B Integrase%2C N-terminal SAM-like%2C phage gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0563 Acife_0564 Acife_0564 Acife_0564 573121 573804 - protein of unknown function DUF484 PFAM: Protein of unknown function DUF484~KEGG: afr:AFE_2745 hypothetical protein gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0564 Acife_0565 Acife_0565 Acife_0565 573805 573981 - hypothetical protein KEGG: afr:AFE_2744 hypothetical protein gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0565 Acife_0566 Acife_0566 Acife_0566 574017 574883 - Diaminopimelate epimerase TIGRFAM: Diaminopimelate epimerase~HAMAP: Diaminopimelate epimerase~KEGG: afe:Lferr_2363 diaminopimelate epimerase~PFAM: Diaminopimelate epimerase gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0566 Acife_0567 Acife_0567 Acife_0567 575303 576493 + phosphate-selective porin O and P PFAM: Phosphate-selective porin O/P~KEGG: afr:AFE_2741 major outer membrane protein 40 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0567 Acife_0568 Acife_0568 Acife_0568 576649 578466 + GTP-binding protein TypA KEGG: afe:Lferr_2361 GTP-binding protein TypA~TIGRFAM: GTP-binding protein TypA%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C C-terminal gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0568 Acife_0569 Acife_0569 Acife_0569 578557 579171 - Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: afr:AFE_2739 phosphatidylethanolamine N-methyltransferase%2C putative gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0569 Acife_0570 Acife_0570 Acife_0570 579168 579551 - Protein ApaG KEGG: afr:AFE_2738 ApaG protein~HAMAP: Protein ApaG~PFAM: ApaG gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0570 Acife_0571 Acife_0571 Acife_0571 579641 579925 - protein of unknown function UPF0044 PFAM: RNA-binding%2C CRM domain~KEGG: afr:AFE_2737 hypothetical protein gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0571 Acife_0572 Acife_0572 Acife_0572 580015 580674 + Ribosomal RNA large subunit methyltransferase E KEGG: afr:AFE_2736 ribosomal RNA large subunit methyltransferase J~HAMAP: Ribosomal RNA large subunit methyltransferase E~PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0572 Acife_0573 Acife_0573 Acife_0573 580871 581228 - pseudogene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0573 Acife_0574 Acife_0574 Acife_0574 581547 583217 + Hydroxylamine reductase TIGRFAM: Hybrid cluster protein~HAMAP: Hybrid cluster protein~KEGG: afr:AFE_1657 hydroxylamine reductase~PFAM: Prismane gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0574 Acife_0575 Acife_0575 Acife_0575 583276 584304 + Oxidoreductase FAD-binding domain protein PFAM: Oxidoreductase FAD-binding region%3B Ferredoxin%3B Oxidoreductase FAD/NAD(P)-binding~KEGG: afr:AFE_1656 ferredoxin/oxidoreductase%2C FAD/NAD-binding gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0575 Acife_0576 Acife_0576 Acife_0576 584441 585553 - FIST C domain-containing protein PFAM: FIST C domain~KEGG: mep:MPQ_1799 hypothetical protein gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0576 Acife_0577 Acife_0577 Acife_0577 585532 586182 - endonuclease III TIGRFAM: Endonuclease III/Nth~PFAM: HhH-GPD domain%3B Endonuclease III-like%2C iron-sulphur cluster loop motif~KEGG: afr:AFE_2682 endonuclease III~SMART: HhH-GPD domain gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0577 Acife_0578 Acife_0578 Acife_0578 586283 586699 - hypothetical protein KEGG: afr:AFE_2680 hypothetical protein gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0578 Acife_0579 Acife_0579 Acife_0579 586783 588171 - RNA-metabolising metallo-beta-lactamase PFAM: RNA-metabolising metallo-beta-lactamase~KEGG: afr:AFE_2679 metallo-beta-lactamase family protein gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0579 Acife_0580 Acife_0580 Acife_0580 588259 589722 - Glycogen synthase TIGRFAM: Glycogen/starch synthases%2C ADP-glucose type~HAMAP: Glycogen/starch synthases%2C ADP-glucose type~KEGG: afr:AFE_2678 glycogen synthase~PFAM: Starch synthase catalytic region%3B Glycosyl transferase%2C group 1 gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0580 Acife_0581 Acife_0581 Acife_0581 589883 590452 + pseudogene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0581 Acife_0582 Acife_0582 Acife_0582 590510 592216 - hypothetical protein KEGG: afr:AFE_2676 hypothetical protein gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0582 Acife_0583 Acife_0583 Acife_0583 592378 592824 + Domain of unknown function DUF1841 PFAM: Protein of unknown function DUF1841~KEGG: afr:AFE_2675 hypothetical protein gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0583 Acife_0584 Acife_0584 Acife_0584 592869 594665 + peptidase M3A and M3B thimet/oligopeptidase F PFAM: Peptidase M3A/M3B%2C thimet/oligopeptidase F%3B Peptidase M3B%2C oligopeptidase F%2C N-terminal~KEGG: afr:AFE_2674 oligoendopeptidase F%2C putative gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0584 Acife_0585 Acife_0585 Acife_0585 594668 596047 + Fumarate hydratase class II TIGRFAM: Fumarate hydratase%2C class II~HAMAP: Fumarate hydratase class II~KEGG: afr:AFE_2673 fumarate hydratase%2C class II~PFAM: Fumarate lyase%3B Fumarase C%2C C-terminal gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0585 Acife_0586 Acife_0586 Acife_0586 596096 597256 + DAHP synthetase I/KDSA PFAM: DAHP synthetase I/KDSA~KEGG: afr:AFE_2671 phospho-2-dehydro-3-deoxyheptonate aldolase%2C putative gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0586 Acife_0587 Acife_0587 Acife_0587 597249 599267 - Methionyl-tRNA synthetase TIGRFAM: Methionyl-tRNA synthetase%2C class Ia%3B Methionyl-tRNA synthetase%2C class Ia%2C beta subunit%2C C-terminal~HAMAP: Methionyl-tRNA synthetase~KEGG: afr:AFE_2672 methionyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class I (M)%3B tRNA-binding region gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0587 Acife_0588 Acife_0588 Acife_0588 599335 599613 + 50S ribosomal protein L28 TIGRFAM: Ribosomal protein L28~HAMAP: Ribosomal protein L28~KEGG: afr:AFE_2670 50S ribosomal protein L28~PFAM: Ribosomal protein L28 gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0588 Acife_0589 Acife_0589 Acife_0589 599624 599779 + 50S ribosomal protein L33 TIGRFAM: Ribosomal protein L33~HAMAP: Ribosomal protein L33~KEGG: afr:AFE_2669 50S ribosomal protein L33~PFAM: Ribosomal protein L33 gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0589 Acife_0590 Acife_0590 Acife_0590 600023 601042 + heat-inducible transcription repressor HrcA TIGRFAM: Negative regulator of class I heat shock protein~HAMAP: Negative regulator of class I heat shock protein~KEGG: afr:AFE_2667 heat-inducible transcription repressor HrcA~PFAM: Negative regulator of class I heat shock protein gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0590 Acife_0591 Acife_0591 Acife_0591 601122 601640 + Protein grpE KEGG: afr:AFE_2666 co-chaperone GrpE~HAMAP: GrpE nucleotide exchange factor~PFAM: GrpE nucleotide exchange factor gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0591 Acife_0592 Acife_0592 Acife_0592 601686 603590 + Chaperone protein dnaK TIGRFAM: Chaperone DnaK~HAMAP: Chaperone DnaK~KEGG: afr:AFE_2665 chaperone protein DnaK~PFAM: Heat shock protein 70 gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0592 Acife_0593 Acife_0593 Acife_0593 603657 604790 + Chaperone protein dnaJ SMART: Heat shock protein DnaJ%2C N-terminal~TIGRFAM: Chaperone DnaJ~KEGG: afr:AFE_2664 chaperone protein DnaJ~HAMAP: Chaperone protein dnaJ~PFAM: Chaperone DnaJ%2C C-terminal%3B Heat shock protein DnaJ%2C N-terminal%3B Heat shock protein DnaJ%2C cysteine-rich region gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0593 Acife_0594 Acife_0594 Acife_0594 604790 605620 + Dihydrodipicolinate reductase TIGRFAM: Dihydrodipicolinate reductase%2C bacterial/plant~HAMAP: Dihydrodipicolinate reductase~KEGG: afr:AFE_2663 dihydrodipicolinate reductase~PFAM: Dihydrodipicolinate reductase gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0594 Acife_0595 Acife_0595 Acife_0595 605650 605964 + Antibiotic biosynthesis monooxygenase PFAM: Antibiotic biosynthesis monooxygenase~KEGG: afr:AFE_2662 antibiotic biosynthesis monooxygenase family protein gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0595 Acife_0596 Acife_0596 Acife_0596 605980 607056 + ATPase-like%2C ParA/MinD PFAM: ATPase-like%2C ParA/MinD~KEGG: afr:AFE_2661 Mrp protein gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0596 Acife_0597 Acife_0597 Acife_0597 607086 607652 + Deoxycytidine triphosphate deaminase KEGG: afr:AFE_2660 deoxycytidine triphosphate deaminase~TIGRFAM: Deoxycytidine triphosphate deaminase~HAMAP: Deoxycytidine triphosphate deaminase gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0597 Acife_0598 Acife_0598 Acife_0598 607660 608736 - NADH:flavin oxidoreductase/NADH oxidase PFAM: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal~KEGG: dba:Dbac_3337 NADH:flavin oxidoreductase/NADH oxidase gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0598 Acife_0599 Acife_0599 Acife_0599 608887 610308 - amino acid permease-associated region PFAM: Amino acid permease-associated region~KEGG: afr:AFE_2659 amino acid permease family protein gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0599 Acife_0600 Acife_0600 Acife_0600 610305 610421 - pseudogene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0600 Acife_0601 Acife_0601 Acife_0601 611322 611789 + hypothetical protein KEGG: sfr:Sfri_2035 hypothetical protein gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0601 Acife_0602 Acife_0602 Acife_0602 611808 612593 - major intrinsic protein PFAM: Major intrinsic protein~KEGG: cte:CT1472 major intrinsic protein gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0602 Acife_0603 Acife_0603 Acife_0603 612609 612968 - hypothetical protein KEGG: xac:XACa0008 hypothetical protein gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0603 Acife_0604 Acife_0604 Acife_0604 613047 613226 - hypothetical protein KEGG: afr:AFE_1624 hypothetical protein gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0604 Acife_0605 Acife_0605 Acife_0605 613681 613995 - lipoprotein%2C putative KEGG: afr:AFE_2811 lipoprotein%2C putative gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0605 Acife_0606 Acife_0606 Acife_0606 614572 617988 + trehalose synthase TIGRFAM: Trehalose synthase/alpha-amylase%2C N-terminal~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region~KEGG: nhl:Nhal_2491 trehalose synthase~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0606 Acife_0607 Acife_0607 Acife_0607 618002 620134 + glycogen debranching enzyme GlgX TIGRFAM: Glycogen debranching enzyme GlgX~PFAM: Glycoside hydrolase%2C family 13%2C N-terminal%3B Glycosyl hydrolase%2C family 13%2C catalytic region~KEGG: dak:DaAHT2_0475 glycogen debranching enzyme GlgX~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0607 Acife_0608 Acife_0608 Acife_0608 620131 621966 + malto-oligosyltrehalose trehalohydrolase TIGRFAM: Malto-oligosyltrehalose trehalohydrolase~PFAM: Glycosyl hydrolase%2C family 13%2C catalytic region%3B Glycoside hydrolase%2C family 13%2C N-terminal~KEGG: nmu:Nmul_A1403 alpha amylase%2C catalytic region~SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0608 Acife_0609 Acife_0609 Acife_0609 621963 627101 + malto-oligosyltrehalose synthase SMART: Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic region~TIGRFAM: Malto-oligosyltrehalose synthase%3B Glycoside hydrolase%2C family 77~KEGG: nmu:Nmul_A1402 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase~PFAM: Glycoside hydrolase%2C family 77%3B Glycosyl hydrolase%2C family 13%2C catalytic region gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0609 Acife_0610 Acife_0610 Acife_0610 627109 627216 - pseudogene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0610 Acife_0611 Acife_0611 Acife_0611 627230 627490 - hypothetical protein KEGG: afe:Lferr_2071 hypothetical protein gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0611 Acife_0612 Acife_0612 Acife_0612 627495 627623 - hypothetical protein gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0612 Acife_0613 Acife_0613 Acife_0613 627836 628573 - cytochrome c1 PFAM: Cytochrome c1~KEGG: afr:AFE_3111 ubiquinol--cytochrome c reductase%2C cytochrome c1 subunit gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0613 Acife_0614 Acife_0614 Acife_0614 628570 629778 - Cytochrome b/b6 domain-containing protein PFAM: Cytochrome b/b6%2C N-terminal%3B Cytochrome b/b6%2C C-terminal~KEGG: afr:AFE_3110 ubiquinol--cytochrome c reductase%2C cytochrome b subunit gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0614 Acife_0615 Acife_0615 Acife_0615 629806 630426 - ubiquinol-cytochrome c reductase%2C iron-sulfur subunit KEGG: afr:AFE_3109 ubiquinol--cytochrome c reductase%2C iron-sulfur subunit~TIGRFAM: Ubiquinol-cytochrome c reductase%2C iron-sulphur subunit%3B Twin-arginine translocation pathway%2C signal sequence~PFAM: Ubiquitinol-cytochrome C reductase%2C Fe-S subunit%2C TAT signal%3B Rieske [2Fe-2S] iron-sulphur domain gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0615 Acife_0616 Acife_0616 Acife_0616 630524 631312 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: afr:AFE_3108 oxidoreductase%2C short-chain dehydrogenase/reductase family gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0616 Acife_0617 Acife_0617 Acife_0617 631305 632117 - cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: afe:Lferr_2705 cytochrome c class I gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0617 Acife_0618 Acife_0618 Acife_0618 632154 632318 - hypothetical protein gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0618 Acife_0619 Acife_0619 Acife_0619 632671 633108 - hypothetical protein gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0619 Acife_0620 Acife_0620 Acife_0620 633299 634000 - metallo-beta-lactamase family protein KEGG: afr:AFE_0956 metallo-beta-lactamase family protein gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0620 Acife_0621 Acife_0621 Acife_0621 634171 635133 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: afr:AFE_0699 sulfur assimilation transcriptional regulator%2C LysR family gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0621 Acife_0622 Acife_0622 Acife_0622 635347 636438 + transaldolase KEGG: afr:AFE_0419 transaldolase~TIGRFAM: Transaldolase subfamily~PFAM: Transaldolase gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0622 Acife_0623 Acife_0623 Acife_0623 636469 637242 - enoyl-(acyl-carrier-protein) reductase KEGG: afr:AFE_0420 enoyl-(acyl-carrier-protein) reductase gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0623 Acife_0624 Acife_0624 Acife_0624 637266 639077 - Lytic transglycosylase catalytic KEGG: afr:AFE_0421 membrane-bound lytic murein transglycosylase D~PFAM: Lytic transglycosylase-like%2C catalytic%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding Lysin subgroup gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0624 Acife_0625 Acife_0625 Acife_0625 639342 640742 + glutamyl-tRNA synthetase KEGG: afr:AFE_0422 glutamyl-tRNA synthetase~TIGRFAM: Glutamyl-tRNA synthetase%2C class Ic%2C bacterial/mitochondrial~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0625 Acife_0626 Acife_0626 Acife_0626 640855 642792 + aconitate hydratase KEGG: afr:AFE_0423 aconitate hydratase~TIGRFAM: Aconitase%2C putative~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%3B Aconitase A/isopropylmalate dehydratase small subunit%2C swivel gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0626 Acife_0627 Acife_0627 Acife_0627 642789 644081 + isocitrate dehydrogenase%2C NADP-dependent KEGG: afe:Lferr_0586 isocitrate dehydrogenase%2C NADP-dependent~TIGRFAM: Isocitrate dehydrogenase NADP-dependent%2C prokaryotic~PFAM: Isocitrate/isopropylmalate dehydrogenase gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0627 Acife_0628 Acife_0628 Acife_0628 644091 645254 + Succinyl-CoA ligase (ADP-forming) subunit beta TIGRFAM: Succinyl-CoA synthetase%2C beta subunit~HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta~KEGG: afr:AFE_0425 succinyl-CoA synthase%2C beta subunit~PFAM: ATP-grasp fold%2C succinyl-CoA synthetase-type%3B ATP-citrate lyase/succinyl-CoA ligase gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0628 Acife_0629 Acife_0629 Acife_0629 645256 645600 + hypothetical protein KEGG: afr:AFE_0426 hypothetical protein gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0629 Acife_0630 Acife_0630 Acife_0630 645597 646469 + succinyl-CoA synthetase%2C alpha subunit KEGG: afr:AFE_0427 succinyl-CoA synthetase%2C alpha subunit~TIGRFAM: Succinyl-CoA ligase%2C alpha subunit~PFAM: ATP-citrate lyase/succinyl-CoA ligase%3B CoA-binding gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0630 Acife_0631 Acife_0631 Acife_0631 646469 648118 + NAD+ synthetase KEGG: afr:AFE_0428 glutamine-dependent NAD+ synthetase~TIGRFAM: NAD+ synthase~PFAM: NAD+ synthase%3B Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0631 Acife_0632 Acife_0632 Acife_0632 648115 648453 + nitrogen regulatory protein P-II PFAM: Nitrogen regulatory protein PII~KEGG: afr:AFE_0429 nitrogen regulatory protein P-II 1 gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0632 Acife_0633 Acife_0633 Acife_0633 648498 649250 - outer membrane assembly lipoprotein YfiO TIGRFAM: Outer membrane assembly lipoprotein YfiO~KEGG: afr:AFE_0430 competence lipoprotein ComL%2C putative gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0633 Acife_0634 Acife_0634 Acife_0634 649279 650238 + pseudouridine synthase%2C RluA family TIGRFAM: Pseudouridine synthase%2C RluC/RluD~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4~KEGG: afr:AFE_0431 ribosomal large subunit pseudouridine synthase D~SMART: RNA-binding S4 gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0634 Acife_0635 Acife_0635 Acife_0635 650219 650980 + Multi-copper polyphenol oxidoreductase%2C laccase KEGG: afe:Lferr_0594 hypothetical protein~TIGRFAM: Multi-copper polyphenol oxidoreductase%2C laccase~PFAM: Multi-copper polyphenol oxidoreductase%2C laccase gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0635 Acife_0636 Acife_0636 Acife_0636 650982 651530 + Acireductone dioxygenase KEGG: afr:AFE_0433 dioxygenase%2C ARD/ARD' family~HAMAP: Acireductone dioxygenase~PFAM: Acireductone dioxygenase%2C ARD gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0636 Acife_0637 Acife_0637 Acife_0637 651527 652699 + ribulose bisphosphate carboxylase large chain PFAM: Ribulose bisphosphate carboxylase%2C large subunit%2C C-terminal~KEGG: afr:AFE_0434 ribulose bisphosphate carboxylase%2C large subunit 2 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0637 Acife_0638 Acife_0638 Acife_0638 652684 653352 + Haloacid dehalogenase domain protein hydrolase PFAM: Haloacid dehalogenase-like hydrolase~KEGG: afe:Lferr_0597 haloacid dehalogenase domain-containing protein hydrolase gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0638 Acife_0639 Acife_0639 Acife_0639 653342 653962 + Methylthioribulose-1-phosphate dehydratase TIGRFAM: Methylthioribulose-1-phosphate dehydratase~HAMAP: Methylthioribulose-1-phosphate dehydratase~KEGG: afr:AFE_0436 aldolase%2C class II~PFAM: Class II aldolase/adducin%2C N-terminal gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0639 Acife_0640 Acife_0640 Acife_0640 653964 654485 + amino acid-binding ACT domain protein PFAM: Amino acid-binding ACT~KEGG: afr:AFE_0437 ACT domain protein gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0640 Acife_0641 Acife_0641 Acife_0641 654485 654988 + Peptide deformylase TIGRFAM: Formylmethionine deformylase~HAMAP: Formylmethionine deformylase~KEGG: afr:AFE_0438 polypeptide deformylase~PFAM: Formylmethionine deformylase gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0641 Acife_0642 Acife_0642 Acife_0642 655463 656170 + MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel~KEGG: afr:AFE_0768 MotA/TolQ/ExbB proton channel family protein gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0642 Acife_0643 Acife_0643 Acife_0643 656218 656616 + Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: afr:AFE_0769 biopolymer transport protein%2C ExbD/TolR family gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0643 Acife_0644 Acife_0644 Acife_0644 656707 657459 + TonB family protein TIGRFAM: TonB%2C C-terminal~KEGG: afe:Lferr_0913 TonB family protein gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0644 Acife_0645 Acife_0645 Acife_0645 657518 658921 + permease for cytosine/purines uracil thiamine allantoin PFAM: Permease%2C cytosine/purines%2C uracil%2C thiamine%2C allantoin~KEGG: afr:AFE_0771 cytosine/purines/uracil/thiamine/allantoin permease family protein gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0645 Acife_0646 Acife_0646 Acife_0646 658933 660168 + amidohydrolase PFAM: Amidohydrolase 1~KEGG: afr:AFE_0772 guanine deaminase%2C putative gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0646 Acife_0647 Acife_0647 Acife_0647 660217 661257 + Adenosine deaminase TIGRFAM: Adenosine deaminase~HAMAP: Adenosine deaminase~KEGG: afr:AFE_0773 adenosine deaminase~PFAM: Adenosine/AMP deaminase gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0647 Acife_0648 Acife_0648 Acife_0648 661284 662285 + purine nucleoside permease PFAM: Purine nucleoside permease~KEGG: afe:Lferr_0917 purine nucleoside permease-like protein gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0648 Acife_0649 Acife_0649 Acife_0649 662347 664608 + aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein PFAM: Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding%3B Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead~KEGG: afr:AFE_0775 xanthine dehydrogenase%2C molybdenum-binding subunit%2C putative gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0649 Acife_0650 Acife_0650 Acife_0650 664605 665066 + (2Fe-2S)-binding domain-containing protein PFAM: [2Fe-2S]-binding%3B Ferredoxin~KEGG: afr:AFE_0776 xanthine dehydrogenase%2C iron-sulfur binding subunit%2C putative gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0650 Acife_0651 Acife_0651 Acife_0651 665059 665925 + FAD-binding molybdopterin dehydrogenase PFAM: Molybdopterin dehydrogenase%2C FAD-binding~KEGG: afr:AFE_0777 xanthine dehydrogenase%2C FAD-binding protein%2C putative gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0651 Acife_0652 Acife_0652 Acife_0652 665929 666513 + hypothetical protein KEGG: afr:AFE_0778 hypothetical protein gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0652 Acife_0653 Acife_0653 Acife_0653 666532 667623 + ring-opening amidohydrolase KEGG: afr:AFE_0779 cyanuric acid amidohydrolase~TIGRFAM: Amidohydrolase ring-opening%2C AtzD/TrzD~PFAM: Amidohydrolase ring-opening%2C AtzD/TrzD gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0653 Acife_0654 Acife_0654 Acife_0654 667620 668561 + XshC-Cox1-family protein PFAM: XdhC- CoxI~KEGG: afr:AFE_0780 xanthine dehydrogenase accessory factor%2C putative gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0654 Acife_0655 Acife_0655 Acife_0655 668578 668778 + hypothetical protein KEGG: afr:AFE_0781 hypothetical protein gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0655 Acife_0656 Acife_0656 Acife_0656 668775 670172 + amidohydrolase%2C AtzE family KEGG: afr:AFE_0782 amidohydrolase%2C AtzE family~TIGRFAM: Amidohydrolase%2C AtzE type~PFAM: Amidase gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0656 Acife_0657 Acife_0657 Acife_0657 670186 670572 + hypothetical protein KEGG: afr:AFE_0783 hypothetical protein gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0657 Acife_0658 Acife_0658 Acife_0658 670581 671189 + hypothetical protein KEGG: afr:AFE_0784 hypothetical protein gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0658 Acife_0659 Acife_0659 Acife_0659 671186 672805 + gamma-glutamyltransferase KEGG: afr:AFE_0785 gamma-glutamyltranspeptidase~TIGRFAM: Gamma-glutamyltranspeptidase~PFAM: Gamma-glutamyltranspeptidase gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0659 Acife_0660 Acife_0660 Acife_0660 672839 673759 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: afr:AFE_0761 transcriptional regulator%2C LysR family gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0660 Acife_0661 Acife_0661 Acife_0661 674034 676370 + TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: afr:AFE_0763 TonB-dependent receptor%2C putative gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0661 Acife_0662 Acife_0662 Acife_0662 676548 677921 + permease for cytosine/purines uracil thiamine allantoin PFAM: Permease%2C cytosine/purines%2C uracil%2C thiamine%2C allantoin~KEGG: mse:Msed_1135 permease for cytosine/purine%2C uracil%2C thiamine%2C allantoin gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0662 Acife_0663 Acife_0663 Acife_0663 677918 678364 + cytidine deaminase KEGG: gau:GAU_1451 cytidine deaminase~TIGRFAM: Cytidine deaminase%2C homotetrameric~PFAM: CMP/dCMP deaminase%2C zinc-binding gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0663 Acife_0664 Acife_0664 Acife_0664 678741 679751 + hypothetical protein KEGG: shl:Shal_1632 purine phosphorylase family 1 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0664 Acife_0665 Acife_0665 Acife_0665 679911 682274 + TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: afr:AFE_3229 TonB-dependent receptor gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0665 Acife_0666 Acife_0666 Acife_0666 682480 682875 + hypothetical protein manually curated gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0666 Acife_0667 Acife_0667 Acife_0667 683106 685919 + SMP-30/Gluconolaconase/LRE-like region-containing protein PFAM: SMP-30/Gluconolaconase/LRE-like region~KEGG: afr:AFE_3230 hypothetical protein gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0667 Acife_0668 Acife_0668 Acife_0668 686101 688215 + N-6 DNA methylase PFAM: DNA methylase%2C adenine-specific~KEGG: tcx:Tcr_0332 N-6 DNA methylase gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0668 Acife_0669 Acife_0669 Acife_0669 688212 689414 + restriction modification system DNA specificity domain-containing protein PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~KEGG: rba:RB11377 polypeptide HsdS gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0669 Acife_0670 Acife_0670 Acife_0670 689489 690967 + hypothetical protein KEGG: axy:AXYL_03767 hypothetical protein gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0670 Acife_0671 Acife_0671 Acife_0671 690967 691926 + hypothetical protein KEGG: cbt:CLH_2146 hypothetical protein gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0671 Acife_0672 Acife_0672 Acife_0672 691904 692065 + hypothetical protein gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0672 Acife_0673 Acife_0673 Acife_0673 692075 692296 + hypothetical protein KEGG: hip:CGSHiEE_05075 hypothetical protein gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0673 Acife_0674 Acife_0674 Acife_0674 692379 693389 + filamentation induced by cAMP protein Fic PFAM: Filamentation induced by cAMP/death on curing%2C related~KEGG: aeh:Mlg_1123 death-on-curing protein gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0674 Acife_0675 Acife_0675 Acife_0675 693386 696622 + type I site-specific deoxyribonuclease%2C HsdR family TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit~PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: type I site-specific deoxyribonuclease%2C HsdR family~SMART: DEAD-like helicase%2C N-terminal gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0675 Acife_0676 Acife_0676 Acife_0676 696822 697157 - hypothetical protein KEGG: xac:XACb0032 hypothetical protein gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0676 Acife_0677 Acife_0677 Acife_0677 697154 697369 - hypothetical protein KEGG: alv:Alvin_3091 hypothetical protein gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0677 Acife_0678 Acife_0678 Acife_0678 697640 698146 - hypothetical protein KEGG: afr:AFE_0443 hypothetical protein gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0678 Acife_0679 Acife_0679 Acife_0679 698146 698478 - hypothetical protein KEGG: afr:AFE_0444 hypothetical protein gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0679 Acife_0680 Acife_0680 Acife_0680 698543 699439 - UTP-glucose-1-phosphate uridylyltransferase KEGG: afr:AFE_0445 UTP-glucose-1-phosphate uridylyltransferase~TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase%2C bacterial/archaeal type~PFAM: Nucleotidyl transferase gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0680 Acife_0681 Acife_0681 Acife_0681 699519 700214 - protein of unknown function DUF502 PFAM: Protein of unknown function DUF502~KEGG: afr:AFE_0446 hypothetical protein gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0681 Acife_0682 Acife_0682 Acife_0682 700287 701717 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family KEGG: afr:AFE_0447 sigma-54 dependent DNA-binding response regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver region%3B ATPase%2C AAA+ type%2C core gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0682 Acife_0683 Acife_0683 Acife_0683 701674 702165 - lipoprotein%2C putative KEGG: afr:AFE_0448 lipoprotein%2C putative gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0683 Acife_0684 Acife_0684 Acife_0684 702165 703649 - integral membrane sensor signal transduction histidine kinase KEGG: afr:AFE_0449 sensor histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like%3B HAMP linker domain%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0684 Acife_0685 Acife_0685 Acife_0685 703924 705600 - DNA repair protein RecN KEGG: afr:AFE_0450 DNA repair protein RecN~TIGRFAM: DNA recombination/repair protein RecN~PFAM: RecF/RecN/SMC protein%2C N-terminal gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0685 Acife_0686 Acife_0686 Acife_0686 705600 706487 - inorganic polyphosphate/ATP-NAD kinase KEGG: afr:AFE_0451 ATP-NAD kinase~HAMAP: inorganic polyphosphate/ATP-NAD kinase~PFAM: ATP-NAD/AcoX kinase gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0686 Acife_0687 Acife_0687 Acife_0687 706555 707292 - putative transcriptional acitvator%2C Baf family TIGRFAM: Bordetella pertussis Bvg accessory factor~HAMAP: Type III pantothenate kinase~KEGG: afr:AFE_0452 transcriptional activator%2C putative%2C Baf family~PFAM: Bordetella pertussis Bvg accessory factor gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0687 Acife_0688 Acife_0688 Acife_0688 707289 708230 - biotin/acetyl-CoA-carboxylase ligase KEGG: afe:Lferr_0614 biotin/acetyl-CoA-carboxylase ligase~TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase~PFAM: Biotin/lipoate A/B protein ligase gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0688 Acife_0689 Acife_0689 Acife_0689 708211 709467 - Gamma-glutamyl phosphate reductase TIGRFAM: Gamma-glutamyl phosphate reductase GPR~HAMAP: Glutamate-5-semialdehyde dehydrogenase~KEGG: afr:AFE_0454 gamma-glutamyl phosphate reductase~PFAM: Aldehyde dehydrogenase gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0689 Acife_0690 Acife_0690 Acife_0690 709685 709867 - pseudogene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0690 Acife_0691 Acife_0691 Acife_0691 709993 710838 + TnsA endonuclease PFAM: TnsA endonuclease%2C N-terminal~KEGG: afe:Lferr_0222 TnsA endonuclease gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0691 Acife_0692 Acife_0692 Acife_0692 710842 713049 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: afe:Lferr_0221 Tn7-like transposition protein B gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0692 Acife_0693 Acife_0693 Acife_0693 713051 713170 + pseudogene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0693 Acife_0694 Acife_0694 Acife_0694 713346 714779 + glucose-6-phosphate 1-dehydrogenase KEGG: rfr:Rfer_4034 glucose-6-phosphate 1-dehydrogenase~TIGRFAM: Glucose-6-phosphate dehydrogenase~PFAM: Glucose-6-phosphate dehydrogenase gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0694 Acife_0695 Acife_0695 Acife_0695 715204 717714 + heavy metal translocating P-type ATPase KEGG: hna:Hneap_0924 heavy metal translocating P-type ATPase~TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P type%2C cation/copper-transporter%3B Copper ion-binding%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase-like hydrolase gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0695 Acife_0696 Acife_0696 Acife_0696 717742 718137 + protein of unknown function DUF302 PFAM: Protein of unknown function DUF302~KEGG: afr:AFE_2447 hypothetical protein gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0696 Acife_0697 Acife_0697 Acife_0697 718200 718406 + Heavy metal transport/detoxification protein PFAM: Heavy metal transport/detoxification protein~KEGG: afr:AFE_2448 heavy metal-binding protein%2C putative gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0697 Acife_0698 Acife_0698 Acife_0698 718427 718672 + glutaredoxin PFAM: Glutaredoxin~KEGG: afr:AFE_2449 hypothetical protein gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0698 Acife_0699 Acife_0699 Acife_0699 718888 719745 + hypothetical protein KEGG: dge:Dgeo_2559 hypothetical protein gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0699 Acife_0700 Acife_0700 Acife_0700 719851 720828 - hypothetical protein KEGG: neu:NE0744 hypothetical protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0700 Acife_0701 Acife_0701 Acife_0701 721282 722139 - hypothetical protein KEGG: mmi:MMAR_2604 hypothetical protein gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0701 Acife_0702 Acife_0702 Acife_0702 722218 722841 - Resolvase domain-containing protein PFAM: Resolvase%2C N-terminal~KEGG: gme:Gmet_3142 resolvase-like protein gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0702 Acife_0703 Acife_0703 Acife_0703 722980 726009 + transposase Tn3 family protein PFAM: Transposase%2C Tn3~KEGG: adn:Alide_4602 transposase Tn3 family protein gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0703 Acife_0704 Acife_0704 Acife_0704 726058 726204 + pseudogene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0704 Acife_0705 Acife_0705 Acife_0705 726404 726613 + hypothetical protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0705 Acife_0706 Acife_0706 Acife_0706 726696 726887 + pseudogene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0706 Acife_0707 Acife_0707 Acife_0707 726845 727699 - S-formylglutathione hydrolase KEGG: afr:AFE_0698 S-formylglutathione hydrolase~TIGRFAM: S-formylglutathione hydrolase~PFAM: Putative esterase gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0707 Acife_0708 Acife_0708 Acife_0708 727699 728808 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase KEGG: afr:AFE_0697 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase~TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase~PFAM: Alcohol dehydrogenase%2C zinc-binding%3B Alcohol dehydrogenase GroES-like gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0708 Acife_0709 Acife_0709 Acife_0709 728908 729492 - S-(hydroxymethyl)glutathione synthase KEGG: afr:AFE_0696 glutathione-dependent formaldehyde-activating enzyme~TIGRFAM: S-(hydroxymethyl)glutathione synthase~PFAM: Glutathione-dependent formaldehyde-activating%2C GFA gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0709 Acife_0710 Acife_0710 Acife_0710 729948 732134 - sigma54 specific transcriptional regulator%2C Fis family KEGG: afe:Lferr_0842 fis family sigma-54 specific transcriptional regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0710 Acife_0711 Acife_0711 Acife_0711 732119 732568 - Protein of unknown function DUF2442 PFAM: Protein of unknown function DUF2442~KEGG: gbm:Gbem_0416 hypothetical protein gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0711 Acife_0712 Acife_0712 Acife_0712 733190 733780 - hypothetical protein manually curated~KEGG: aaa:Acav_1435 hypothetical protein gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0712 Acife_0713 Acife_0713 Acife_0713 733770 734918 - protein of unknown function DUF955 KEGG: aaa:Acav_1436 hypothetical protein~PFAM: Protein of unknown function DUF955%3B Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0713 Acife_0714 Acife_0714 Acife_0714 734981 735889 - hypothetical protein KEGG: bpy:Bphyt_0239 hypothetical protein gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0714 Acife_0715 Acife_0715 Acife_0715 735882 736568 - hypothetical protein KEGG: bvi:Bcep1808_7631 hypothetical protein gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0715 Acife_0716 Acife_0716 Acife_0716 736595 737152 - hypothetical protein gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0716 Acife_0717 Acife_0717 Acife_0717 738057 739019 + AntA/AntB antirepressor domain protein PFAM: AntA/AntB antirepressor~KEGG: btr:Btr_0954 hypothetical protein gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0717 Acife_0718 Acife_0718 Acife_0718 739160 739609 + hypothetical protein gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0718 Acife_0719 Acife_0719 Acife_0719 739609 741876 + TRAG family protein PFAM: TRAG protein~KEGG: hna:Hneap_1649 TraG family protein gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0719 Acife_0720 Acife_0720 Acife_0720 741985 743493 + HipA domain protein PFAM: HipA-like%2C N-terminal%3B HipA-like%2C C-terminal~KEGG: rah:Rahaq_3819 HipA domain protein gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0720 Acife_0721 Acife_0721 Acife_0721 744025 744813 + hypothetical protein KEGG: gsu:GSU0959 hypothetical protein gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0721 Acife_0722 Acife_0722 Acife_0722 745359 746204 - hypothetical protein KEGG: pat:Patl_2748 hypothetical protein gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0722 Acife_0723 Acife_0723 Acife_0723 746376 747482 - hypothetical protein KEGG: afr:AFE_1752 hypothetical protein gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0723 Acife_0724 Acife_0724 Acife_0724 747621 748904 - UMUC domain protein DNA-repair protein PFAM: DNA-repair protein%2C UmuC-like~KEGG: afr:AFE_1751 UmuC protein gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0724 Acife_0725 Acife_0725 Acife_0725 748912 749391 - Peptidase S24/S26A/S26B%2C conserved region PFAM: Peptidase S24/S26A/S26B%2C conserved region~KEGG: afr:AFE_1750 UmuD protein gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0725 Acife_0726 Acife_0726 Acife_0726 749381 749620 - hypothetical protein gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0726 Acife_0727 Acife_0727 Acife_0727 749718 750401 - protein of unknown function DUF159 PFAM: Protein of unknown function DUF159~KEGG: afr:AFE_1749 hypothetical protein gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0727 Acife_0728 Acife_0728 Acife_0728 750491 752674 + helicase%2C RecD/TraA family KEGG: nha:Nham_2841 helicase RecD/TraA~TIGRFAM: DNA helicase%2C RecD/TraA type~SMART: ATPase%2C AAA+ type%2C core%3B Helix-hairpin-helix DNA-binding motif%2C class 1 gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0728 Acife_0729 Acife_0729 Acife_0729 753040 753993 - hypothetical protein KEGG: cpc:Cpar_0666 hypothetical protein gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0729 Acife_0730 Acife_0730 Acife_0730 754070 754390 + histone family protein DNA-binding protein manually curated~PFAM: Histone-like bacterial DNA-binding protein~KEGG: afr:AFE_1070 DNA-binding protein%2C HU family~SMART: Histone-like bacterial DNA-binding protein gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0730 Acife_0731 Acife_0731 Acife_0731 755124 755480 + hypothetical protein gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0731 Acife_0732 Acife_0732 Acife_0732 756389 756751 + Roadblock/LC7 family protein PFAM: Dynein light chain-related~KEGG: afr:AFE_2578 roadblock/LC7 domain protein gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0732 Acife_0733 Acife_0733 Acife_0733 756918 757466 + hypothetical protein KEGG: cts:Ctha_0396 hypothetical protein gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0733 Acife_0734 Acife_0734 Acife_0734 757679 760336 + diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~KEGG: afe:Lferr_1405 diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0734 Acife_0735 Acife_0735 Acife_0735 760336 760647 + nitrogen regulatory protein P-II PFAM: Nitrogen regulatory protein PII~KEGG: cti:RALTA_A0736 regulatory protein (p-ii) for nitrogen assimilation by glutamine synthetase (ATase) gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0735 Acife_0736 Acife_0736 Acife_0736 760775 761137 + Roadblock/LC7 family protein PFAM: Dynein light chain-related~KEGG: afr:AFE_2578 roadblock/LC7 domain protein gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0736 Acife_0737 Acife_0737 Acife_0737 761168 761704 + hypothetical protein KEGG: gmc:GY4MC1_1878 methyl-accepting chemotaxis sensory transducer gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0737 Acife_0738 Acife_0738 Acife_0738 761991 762731 - RES domain protein KEGG: afr:AFE_1072 hypothetical protein~manually curated~PFAM: RES gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0738 Acife_0739 Acife_0739 Acife_0739 762731 763123 - hypothetical protein KEGG: afr:AFE_1071 hypothetical protein gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0739 Acife_0740 Acife_0740 Acife_0740 763621 763830 + hypothetical protein gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0740 Acife_0741 Acife_0741 Acife_0741 763820 764203 + hypothetical protein manually curated gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0741 Acife_0742 Acife_0742 Acife_0742 764310 764651 + hypothetical protein gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0742 Acife_0743 Acife_0743 Acife_0743 764769 765890 + hypothetical protein KEGG: afr:AFE_3189 hypothetical protein gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0743 Acife_0744 Acife_0744 Acife_0744 765860 766363 + hypothetical protein KEGG: afe:Lferr_1541 hypothetical protein gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0744 Acife_0745 Acife_0745 Acife_0745 766356 766493 + hypothetical protein gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0745 Acife_0746 Acife_0746 Acife_0746 766476 766604 - hypothetical protein gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0746 Acife_0747 Acife_0747 Acife_0747 766819 770508 + hypothetical protein KEGG: cmi:CMM_1110 hypothetical protein gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0747 Acife_0748 Acife_0748 Acife_0748 770771 771145 + hypothetical protein KEGG: ava:Ava_C0048 hypothetical protein gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0748 Acife_0749 Acife_0749 Acife_0749 771165 771701 + hypothetical protein KEGG: tmz:Tmz1t_2370 hypothetical protein gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0749 Acife_0750 Acife_0750 Acife_0750 772034 772276 + hypothetical protein gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0750 Acife_0751 Acife_0751 Acife_0751 772590 773396 + hypothetical protein KEGG: pao:Pat9b_2156 hypothetical protein gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0751 Acife_0752 Acife_0752 Acife_0752 773499 773774 + histone family protein DNA-binding protein KEGG: afr:AFE_1584 DNA-binding protein HU family protein~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0752 Acife_0753 Acife_0753 Acife_0753 773796 773897 + histone family protein DNA-binding protein PFAM: Histone-like bacterial DNA-binding protein gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0753 Acife_0754 Acife_0754 Acife_0754 774012 774749 + TnsA endonuclease PFAM: TnsA endonuclease%2C N-terminal~KEGG: afe:Lferr_0222 TnsA endonuclease gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0754 Acife_0755 Acife_0755 Acife_0755 774863 775240 + hypothetical protein KEGG: afe:Lferr_0221 Tn7-like transposition protein B gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0755 Acife_0756 Acife_0756 Acife_0756 775184 775762 - Resolvase domain-containing protein PFAM: Resolvase%2C N-terminal~KEGG: sus:Acid_6125 resolvase domain-containing protein gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0756 Acife_0757 Acife_0757 Acife_0757 775884 776543 + plasmid pRiA4b ORF-3 family protein PFAM: Plasmid pRiA4b ORF-3-like~KEGG: syp:SYNPCC7002_G0040 hypothetical protein gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0757 Acife_0758 Acife_0758 Acife_0758 776543 777973 + hypothetical protein KEGG: syp:SYNPCC7002_G0041 hypothetical protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0758 Acife_0759 Acife_0759 Acife_0759 777956 779506 - cytochrome c biogenesis protein transmembrane region PFAM: Cytochrome c assembly protein%2C transmembrane region~KEGG: afr:AFE_0545 thiol:disulfide interchange protein DsbD gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0759 Acife_0760 Acife_0760 Acife_0760 779607 780569 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~KEGG: pat:Patl_0274 redoxin gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0760 Acife_0761 Acife_0761 Acife_0761 780566 781198 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: mmb:Mmol_1963 RNA polymerase%2C sigma-24 subunit%2C ECF subfamily~TIGRFAM: RNA polymerase sigma-70~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma factor 70%2C region 4 type 2 gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0761 Acife_0762 Acife_0762 Acife_0762 781232 781696 - protein of unknown function DUF302 PFAM: Protein of unknown function DUF302~KEGG: dsh:Dshi_2075 hypothetical protein gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0762 Acife_0763 Acife_0763 Acife_0763 781957 782244 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911~KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0763 Acife_0764 Acife_0764 Acife_0764 782241 783125 + Integrase catalytic region KEGG: pna:Pnap_0429 integrase catalytic subunit~manually curated~PFAM: Integrase%2C catalytic core gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0764 Acife_0765 Acife_0765 Acife_0765 783183 783686 - hypothetical protein KEGG: bgl:bglu_2g14420 disulfide isomerase/thiol-disulfide oxidase gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0765 Acife_0766 Acife_0766 Acife_0766 783808 784185 - hypothetical protein KEGG: afr:AFE_2508 hypothetical protein gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0766 Acife_0767 Acife_0767 Acife_0767 784257 784970 - Protein of unknown function DUF2063 PFAM: Protein of unknown function DUF2063~KEGG: nha:Nham_4648 hypothetical protein gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0767 Acife_0768 Acife_0768 Acife_0768 784963 785841 - protein of unknown function DUF692 PFAM: Protein of unknown function DUF692~KEGG: pol:Bpro_4790 hypothetical protein gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0768 Acife_0769 Acife_0769 Acife_0769 785942 786229 - Protein of unknown function DUF2282%2C transmembrane PFAM: Protein of unknown function DUF2282%2C transmembrane~KEGG: ppr:PBPRA3515 putative signal peptide protein gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0769 Acife_0770 Acife_0770 Acife_0770 786318 786806 - DoxX family protein PFAM: DoxX~KEGG: reh:H16_A1816 hypothetical protein gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0770 Acife_0771 Acife_0771 Acife_0771 786856 787335 - hypothetical protein KEGG: shl:Shal_3553 hypothetical protein gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0771 Acife_0772 Acife_0772 Acife_0772 787346 787630 - Protein of unknown function DUF2282%2C transmembrane PFAM: Protein of unknown function DUF2282%2C transmembrane~KEGG: llo:LLO_1725 hypothetical protein gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0772 Acife_0773 Acife_0773 Acife_0773 787808 788509 - hypothetical protein gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0773 Acife_0774 Acife_0774 Acife_0774 788499 788966 - transcriptional regulator%2C MerR family manually curated~PFAM: HTH transcriptional regulator%2C MerR~KEGG: afr:AFE_2509 transcriptional regulator%2C MerR family~SMART: HTH transcriptional regulator%2C MerR gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0774 Acife_0775 Acife_0775 Acife_0775 788970 789191 - hypothetical protein gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0775 Acife_0776 Acife_0776 Acife_0776 789343 789608 + pseudogene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0776 Acife_0777 Acife_0777 Acife_0777 789593 790114 + pseudogene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0777 Acife_0778 Acife_0778 Acife_0778 790296 790421 - pseudogene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0778 Acife_0779 Acife_0779 Acife_0779 790480 793374 - pseudogene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0779 Acife_0780 Acife_0780 Acife_0780 793384 794211 - ATPase associated with various cellular activities AAA_5 PFAM: ATPase associated with various cellular activities%2C AAA-5%3B CbbQ/NirQ/NorQ C-terminal~KEGG: afr:AFE_2536 CbbQ/NirQ/NorQ/GpvN family protein gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0780 Acife_0781 Acife_0781 Acife_0781 794208 794402 - hypothetical protein gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0781 Acife_0782 Acife_0782 Acife_0782 794477 794998 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~KEGG: nmu:Nmul_A2682 thioredoxin gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0782 Acife_0783 Acife_0783 Acife_0783 795049 795642 - Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: afr:AFE_0155 phosphoglycerate mutase family protein gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0783 Acife_0784 Acife_0784 Acife_0784 795644 797293 - Glucose-6-phosphate isomerase KEGG: afr:AFE_2924 glucose-6-phosphate isomerase~HAMAP: Phosphoglucose isomerase (PGI)~PFAM: Phosphoglucose isomerase (PGI) gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0784 Acife_0785 Acife_0785 Acife_0785 797326 798405 - transaldolase KEGG: pna:Pnap_4495 transaldolase~TIGRFAM: Transaldolase subfamily~PFAM: Transaldolase gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0785 Acife_0786 Acife_0786 Acife_0786 798402 799202 - pseudogene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0786 Acife_0787 Acife_0787 Acife_0787 799221 800879 - mercuric reductase KEGG: tbd:Tbd_1341 putative mercuric reductase~TIGRFAM: Mercuric reductase MerA~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Heavy metal transport/detoxification protein%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0787 Acife_0788 Acife_0788 Acife_0788 800916 801269 - Heavy metal transport/detoxification protein PFAM: Heavy metal transport/detoxification protein~KEGG: pbr:PB2503_12404 mercuric transport protein periplasmic component gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0788 Acife_0789 Acife_0789 Acife_0789 801304 801723 - Mercuric transport protein MerT PFAM: Mercuric transport protein MerT~KEGG: rme:Rmet_6345 mercuric ion transport protein MerT gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0789 Acife_0790 Acife_0790 Acife_0790 802029 802106 - pseudogene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0790 Acife_0791 Acife_0791 Acife_0791 802186 802851 - pseudogene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0791 Acife_0792 Acife_0792 Acife_0792 802868 803872 - NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase PFAM: D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic region~KEGG: afr:AFE_3161 D-isomer specific 2-hydroxyacid dehydrogenase family protein gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0792 Acife_0793 Acife_0793 Acife_0793 803895 805190 - Enolase TIGRFAM: Enolase~HAMAP: Enolase~KEGG: hna:Hneap_0970 enolase~PFAM: Enolase%2C C-terminal%3B Enolase%2C N-terminal gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0793 Acife_0794 Acife_0794 Acife_0794 805202 806629 - pyruvate kinase KEGG: afe:Lferr_1478 pyruvate kinase~TIGRFAM: Pyruvate kinase~PFAM: Pyruvate kinase%2C barrel%3B Pyruvate kinase%2C alpha/beta gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0794 Acife_0795 Acife_0795 Acife_0795 806626 807546 - deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase~KEGG: afr:AFE_1802 aldolase gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0795 Acife_0796 Acife_0796 Acife_0796 807539 808936 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation~KEGG: afr:AFE_1803 pyridine nucleotide-disulfide oxidoreductase gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0796 Acife_0797 Acife_0797 Acife_0797 808951 811458 - plasma-membrane proton-efflux P-type ATPase KEGG: hna:Hneap_0971 plasma-membrane proton-efflux P-type ATPase~TIGRFAM: ATPase%2C P-type%2C plasma-membrane proton-efflux%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B ATPase%2C P-type cation-transporter%2C N-terminal%3B Haloacid dehalogenase-like hydrolase gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0797 Acife_0798 Acife_0798 Acife_0798 811572 811842 - pseudogene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0798 Acife_0799 Acife_0799 Acife_0799 811899 813149 - catalytic domain-containing protein of components of various dehydrogenase complexes PFAM: 2-oxoacid dehydrogenase acyltransferase%2C catalytic domain%3B Biotin/lipoyl attachment%3B E3 binding~KEGG: afr:AFE_1811 2-oxo acid dehydrogenase%2C acyltransferase%2C putative gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0799 Acife_0800 Acife_0800 Acife_0800 813146 814138 - Transketolase central region PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~KEGG: afr:AFE_1812 dehydrogenase complex%2C E1 component%2C beta subunit%2C putative gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0800 Acife_0801 Acife_0801 Acife_0801 814135 815199 - dehydrogenase E1 component PFAM: Dehydrogenase%2C E1 component~KEGG: afr:AFE_1813 dehydrogenase complex%2C E1 component%2C alpha subunit%2C putative gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0801 Acife_0802 Acife_0802 Acife_0802 815192 815542 - alkylhydroperoxidase like protein%2C AhpD family KEGG: afr:AFE_1814 alkylhydroperoxidase AhpD domain protein~TIGRFAM: Alkylhydroperoxidase AhpD core~PFAM: Carboxymuconolactone decarboxylase gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0802 Acife_0803 Acife_0803 Acife_0803 815696 816460 - polyphosphate kinase 2 KEGG: afr:AFE_1892 hypothetical protein~TIGRFAM: polyphosphate kinase 2~PFAM: Polyphosphate kinase 2 gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0803 Acife_0804 Acife_0804 Acife_0804 816457 817662 - Phosphoglycerate kinase KEGG: afr:AFE_3250 phosphoglycerate kinase~HAMAP: Phosphoglycerate kinase~PFAM: Phosphoglycerate kinase gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0804 Acife_0805 Acife_0805 Acife_0805 817678 818694 - glyceraldehyde-3-phosphate dehydrogenase%2C type I KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase%2C type I~TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase%2C type I~PFAM: Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain%3B Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0805 Acife_0806 Acife_0806 Acife_0806 818855 819319 - pseudogene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0806 Acife_0807 Acife_0807 Acife_0807 819854 821920 - copper-translocating P-type ATPase KEGG: afr:AFE_2439 copper-translocating P-type ATPase~TIGRFAM: ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B Haloacid dehalogenase-like hydrolase gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0807 Acife_0808 Acife_0808 Acife_0808 821936 822232 - hypothetical protein gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0808 Acife_0809 Acife_0809 Acife_0809 822406 823221 - Cyclopropane-fatty-acyl-phospholipid synthase PFAM: Cyclopropane-fatty-acyl-phospholipid synthase~KEGG: afe:Lferr_2063 hypothetical protein gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0809 Acife_0810 Acife_0810 Acife_0810 823319 824635 + outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afe:Lferr_0170 outer membrane efflux protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0810 Acife_0811 Acife_0811 Acife_0811 824632 826068 + efflux transporter%2C RND family%2C MFP subunit KEGG: afr:AFE_2433 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0811 Acife_0812 Acife_0812 Acife_0812 826061 829171 + heavy metal efflux pump%2C CzcA family KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0812 Acife_0813 Acife_0813 Acife_0813 829197 829943 + cytochrome b561 KEGG: afe:Lferr_0173 cytochrome b561 gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0813 Acife_0814 Acife_0814 Acife_0814 830071 830433 + hypothetical protein KEGG: afe:Lferr_0174 hypothetical protein gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0814 Acife_0815 Acife_0815 Acife_0815 830551 830859 + hypothetical protein KEGG: afe:Lferr_2056 hypothetical protein gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0815 Acife_0816 Acife_0816 Acife_0816 830900 831469 + pseudogene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0816 Acife_0817 Acife_0817 Acife_0817 831492 831701 + hypothetical protein gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0817 Acife_0818 Acife_0818 Acife_0818 832160 832363 + hypothetical protein KEGG: afe:Lferr_0179 hypothetical protein gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0818 Acife_0819 Acife_0819 Acife_0819 832512 832828 + pseudogene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0819 Acife_0820 Acife_0820 Acife_0820 832899 833149 - pseudogene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0820 Acife_0821 Acife_0821 Acife_0821 833188 833448 + pseudogene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0821 Acife_0822 Acife_0822 Acife_0822 833661 836756 - acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: afe:Lferr_0183 acriflavin resistance protein gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0822 Acife_0823 Acife_0823 Acife_0823 836798 837928 - hypothetical protein KEGG: afe:Lferr_0184 hypothetical protein gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0823 Acife_0824 Acife_0824 Acife_0824 837925 839385 - outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afe:Lferr_0185 outer membrane efflux protein gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0824 Acife_0825 Acife_0825 Acife_0825 839392 841398 - heavy metal translocating P-type ATPase KEGG: afe:Lferr_0186 heavy metal translocating P-type ATPase~TIGRFAM: ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B Haloacid dehalogenase-like hydrolase gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0825 Acife_0826 Acife_0826 Acife_0826 841428 841808 - regulatory protein ArsR KEGG: afe:Lferr_0187 ArsR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0826 Acife_0827 Acife_0827 Acife_0827 842046 842633 - pseudogene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0827 Acife_0828 Acife_0828 Acife_0828 842807 844486 + Tn7-like transposition protein C KEGG: afe:Lferr_0144 Tn7-like transposition protein C gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0828 Acife_0829 Acife_0829 Acife_0829 844483 848021 + pseudogene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0829 Acife_0830 Acife_0830 Acife_0830 845593 847299 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: eba:p2A221 transposase gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0830 Acife_0831 Acife_0831 Acife_0831 848014 849687 + hypothetical protein KEGG: afe:Lferr_0142 hypothetical protein gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0831 Acife_0832 Acife_0832 Acife_0832 850088 851386 - N-6 DNA methylase PFAM: DNA methylase%2C adenine-specific~KEGG: glo:Glov_3517 N-6 DNA methylase gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0832 Acife_0833 Acife_0833 Acife_0833 851388 852200 - hypothetical protein KEGG: dvl:Dvul_0856 hypothetical protein gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0833 Acife_0834 Acife_0834 Acife_0834 852197 853927 - SMC domain-containing protein KEGG: dvl:Dvul_0855 SMC domain-containing protein gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0834 Acife_0835 Acife_0835 Acife_0835 853930 855780 - restriction modification system DNA specificity domain-containing protein PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~KEGG: glo:Glov_3515 restriction modification system DNA specificity domain gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0835 Acife_0836 Acife_0836 Acife_0836 855897 856142 + addiction module antidote protein%2C CC2985 family KEGG: neu:NE1524 hypothetical protein~TIGRFAM: Putative addiction module antidote protein%2C CC2985~PFAM: Putative addiction module antidote protein%2C CC2985 gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0836 Acife_0837 Acife_0837 Acife_0837 856135 856425 + plasmid stabilization system PFAM: Plasmid stabilisation system~KEGG: bsb:Bresu_1458 plasmid stabilization system gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0837 Acife_0838 Acife_0838 Acife_0838 856483 859272 - type III restriction protein res subunit KEGG: glo:Glov_3512 type III restriction protein res subunit~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal~SMART: DEAD-like helicase%2C N-terminal gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0838 Acife_0839 Acife_0839 Acife_0839 859427 861115 - putative transcriptional regulator PFAM: ATPase associated with various cellular activities%2C AAA-4~KEGG: aaa:Acav_0838 putative transcriptional regulator gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0839 Acife_0840 Acife_0840 Acife_0840 861087 861284 - DNA binding domain protein%2C excisionase family KEGG: bav:BAV0547 hypothetical protein~TIGRFAM: Excisionase/Xis%2C DNA-binding~PFAM: Prophage CP4-57 regulatory gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0840 Acife_0841 Acife_0841 Acife_0841 861414 862598 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_0455 hypothetical protein gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0841 Acife_0842 Acife_0842 Acife_0842 862659 863651 - DNA polymerase III%2C delta subunit KEGG: afr:AFE_0457 DNA polymerase III%2C delta subunit~TIGRFAM: DNA polymerase III%2C delta subunit~PFAM: DNA polymerase III%2C delta gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0842 Acife_0843 Acife_0843 Acife_0843 863653 864171 - rare lipoprotein B%2C putative KEGG: afr:AFE_0458 rare lipoprotein B%2C putative gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0843 Acife_0844 Acife_0844 Acife_0844 864168 866633 - leucyl-tRNA synthetase KEGG: afr:AFE_0459 leucyl-tRNA synthetase~TIGRFAM: Leucyl-tRNA synthetase%2C class Ia%2C bacterial/mitochondrial gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0844 Acife_0845 Acife_0845 Acife_0845 866703 866822 - hypothetical protein gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0845 Acife_0846 Acife_0846 Acife_0846 866815 867081 - addiction module toxin%2C Txe/YoeB family KEGG: eba:ebD102 hypothetical protein~TIGRFAM: Addiction module toxin%2C Txe/YoeB%3B Addiction module toxin%2C RelE/StbE~PFAM: Addiction module toxin%2C Txe/YoeB gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0846 Acife_0847 Acife_0847 Acife_0847 867075 867317 - prevent-host-death family protein TIGRFAM: Prevent-host-death protein~KEGG: eba:ebD103 putative antitoxin of toxin-antitoxin stability system gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0847 Acife_0848 Acife_0848 Acife_0848 867488 867784 - hypothetical protein KEGG: app:CAP2UW1_0321 putative transcriptional regulator gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0848 Acife_0849 Acife_0849 Acife_0849 867812 868192 - regulatory protein MarR KEGG: gca:Galf_0854 regulatory protein MarR gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0849 Acife_0850 Acife_0850 Acife_0850 868189 868602 - hypothetical protein KEGG: mag:amb3185 hypothetical protein gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0850 Acife_0851 Acife_0851 Acife_0851 868661 869389 + peptidase M15D vanX D-ala-D-ala dipeptidase PFAM: Peptidase M15D%2C vanX D-ala-D-ala dipeptidase~KEGG: afr:AFE_0462 D-alanyl-D-alanine dipeptidase%2C putative gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0851 Acife_0852 Acife_0852 Acife_0852 869382 870905 - sulphate transporter PFAM: Sulphate transporter%3B Sulphate transporter/antisigma-factor antagonist STAS~KEGG: gca:Galf_2119 sulphate transporter gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0852 Acife_0853 Acife_0853 Acife_0853 871237 872040 + DNA-binding DNA glycosylase/AP lyase%2C H2TH PFAM: DNA glycosylase/AP lyase%2C H2TH DNA-binding~KEGG: afr:AFE_0463 formamidopyrimidine-DNA glycosylase%2C putative gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0853 Acife_0854 Acife_0854 Acife_0854 872053 872502 - Rhodanese-like protein SMART: Rhodanese-like~KEGG: afe:Lferr_0624 rhodanese domain-containing protein gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0854 Acife_0855 Acife_0855 Acife_0855 872783 873946 + cation diffusion facilitator family transporter KEGG: afr:AFE_0465 cation efflux family protein~TIGRFAM: Cation efflux protein~PFAM: Cation efflux protein gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0855 Acife_0856 Acife_0856 Acife_0856 874101 875516 + glutamine synthetase%2C type I KEGG: afr:AFE_0466 glutamine synthetase%2C type I~TIGRFAM: Glutamine synthetase type I~PFAM: Glutamine synthetase%2C catalytic region%3B Glutamine synthetase%2C beta-Grasp gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0856 Acife_0857 Acife_0857 Acife_0857 875664 876227 + hypothetical protein KEGG: afe:Lferr_0627 hypothetical protein gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0857 Acife_0858 Acife_0858 Acife_0858 876324 878413 + pseudogene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0858 Acife_0859 Acife_0859 Acife_0859 876897 877184 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911~KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0859 Acife_0860 Acife_0860 Acife_0860 877181 878065 + Integrase catalytic region KEGG: pna:Pnap_0429 integrase catalytic subunit~manually curated~PFAM: Integrase%2C catalytic core gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0860 Acife_0861 Acife_0861 Acife_0861 878395 879096 + protein-L-isoaspartate O-methyltransferase KEGG: afr:AFE_0469 protein-L-isoaspartate O-methyltransferase~TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase~PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0861 Acife_0862 Acife_0862 Acife_0862 879093 880034 + RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily KEGG: afr:AFE_0470 RNA polymerase sigma-38 factor~TIGRFAM: RNA polymerase sigma factor RpoS%2C proteobacteria%3B RNA polymerase sigma-70~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma-70 region 3%3B RNA polymerase sigma-70 region 4 gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0862 Acife_0863 Acife_0863 Acife_0863 880062 880436 - protein of unknown function DUF498 PFAM: Protein of unknown function DUF498~KEGG: afr:AFE_0471 hypothetical protein gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0863 Acife_0864 Acife_0864 Acife_0864 880531 881712 + aminotransferase class I and II PFAM: Aminotransferase%2C class I/II~KEGG: afr:AFE_0472 aminotransferase%2C class I/II gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0864 Acife_0865 Acife_0865 Acife_0865 881712 883034 + homoserine dehydrogenase PFAM: Homoserine dehydrogenase%2C catalytic%3B Aspartate/homoserine dehydrogenase%2C NAD-binding%3B Amino acid-binding ACT~KEGG: afe:Lferr_0633 homoserine dehydrogenase gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0865 Acife_0866 Acife_0866 Acife_0866 883087 884217 + threonine synthase KEGG: afr:AFE_0474 threonine synthase~TIGRFAM: Threonine synthase~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0866 Acife_0867 Acife_0867 Acife_0867 884217 885182 + hypothetical protein KEGG: afr:AFE_0475 hypothetical protein gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0867 Acife_0868 Acife_0868 Acife_0868 885183 885461 + single-stranded-DNA-specific exonuclease RecJ KEGG: afr:AFE_0476 single-stranded-DNA-specific exonuclease RecJ gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0868 Acife_0869 Acife_0869 Acife_0869 885630 886862 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: reh:H16_A0820 site-specific recombinase XerD gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0869 Acife_0870 Acife_0870 Acife_0870 886867 888852 + hypothetical protein KEGG: reh:H16_A0821 hypothetical protein gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0870 Acife_0871 Acife_0871 Acife_0871 888858 891014 + putative phage integrase KEGG: reh:H16_A0822 putative phage integrase gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0871 Acife_0872 Acife_0872 Acife_0872 891001 891474 + hypothetical protein KEGG: reh:H16_A0823 hypothetical protein gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0872 Acife_0873 Acife_0873 Acife_0873 891474 893291 + phosphoesterase RecJ domain protein PFAM: Phosphoesterase%2C RecJ-like%3B Phosphoesterase%2C DHHA1~KEGG: afr:AFE_0476 single-stranded-DNA-specific exonuclease RecJ gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0873 Acife_0874 Acife_0874 Acife_0874 893646 893780 - hypothetical protein gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0874 Acife_0875 Acife_0875 Acife_0875 894331 899682 + hypothetical protein KEGG: noc:Noc_0639 hypothetical protein gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0875 Acife_0876 Acife_0876 Acife_0876 899843 900439 - protein of unknown function UPF0153 PFAM: Uncharacterised protein family UPF0153~KEGG: xfa:XF2027 hypothetical protein gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0876 Acife_0877 Acife_0877 Acife_0877 900720 900854 + hypothetical protein gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0877 Acife_0878 Acife_0878 Acife_0878 901532 901828 - SpoVT/AbrB domain-containing protein PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: afr:AFE_2886 PemI family protein gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0878 Acife_0879 Acife_0879 Acife_0879 902017 902148 + pseudogene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0879 Acife_0880 Acife_0880 Acife_0880 902161 903024 + hypothetical protein KEGG: afr:AFE_3189 hypothetical protein gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0880 Acife_0881 Acife_0881 Acife_0881 903463 906261 + putative DNA methylase KEGG: afe:Lferr_1287 putative DNA methylase gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0881 Acife_0882 Acife_0882 Acife_0882 906258 907319 + protein of unknown function DUF1016 PFAM: Protein of unknown function DUF1016~KEGG: vei:Veis_1750 hypothetical protein gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0882 Acife_0883 Acife_0883 Acife_0883 907316 909415 + DEAD-like helicase SMART: DEAD-like helicase%2C N-terminal~KEGG: afe:Lferr_1285 YeeB-like protein gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0883 Acife_0884 Acife_0884 Acife_0884 909408 910601 + helicase A859L PFAM: Putative helicase A859L~KEGG: afe:Lferr_1284 YeeC-like protein gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0884 Acife_0885 Acife_0885 Acife_0885 910652 910897 + hypothetical protein gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0885 Acife_0886 Acife_0886 Acife_0886 911295 912383 + aminotransferase class V PFAM: Aminotransferase%2C class V/Cysteine desulfurase~KEGG: afe:Lferr_0188 class V aminotransferase gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0886 Acife_0887 Acife_0887 Acife_0887 912393 912500 + pseudogene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0887 Acife_0888 Acife_0888 Acife_0888 912576 912698 + hypothetical protein gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0888 Acife_0889 Acife_0889 Acife_0889 912825 913967 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: afe:Lferr_0195 FAD-dependent pyridine nucleotide-disulfide oxidoreductase gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0889 Acife_0890 Acife_0890 Acife_0890 914776 916842 - copper-translocating P-type ATPase KEGG: afr:AFE_2439 copper-translocating P-type ATPase~TIGRFAM: ATPase%2C P type%2C cation/copper-transporter%3B ATPase%2C P-type%2C heavy metal translocating%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B Haloacid dehalogenase-like hydrolase gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0890 Acife_0891 Acife_0891 Acife_0891 916935 917090 - pseudogene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0891 Acife_0892 Acife_0892 Acife_0892 917328 917549 - pseudogene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0892 Acife_0893 Acife_0893 Acife_0893 917798 918148 + hypothetical protein KEGG: afr:AFE_2435 hypothetical protein gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0893 Acife_0894 Acife_0894 Acife_0894 918242 919558 + outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afe:Lferr_0170 outer membrane efflux protein gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0894 Acife_0895 Acife_0895 Acife_0895 919555 920991 + efflux transporter%2C RND family%2C MFP subunit KEGG: afr:AFE_2433 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0895 Acife_0896 Acife_0896 Acife_0896 920984 924094 + heavy metal efflux pump%2C CzcA family KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0896 Acife_0897 Acife_0897 Acife_0897 924120 924866 + cytochrome b561 KEGG: afe:Lferr_0173 cytochrome b561 gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0897 Acife_0898 Acife_0898 Acife_0898 924994 925356 + hypothetical protein KEGG: afe:Lferr_0174 hypothetical protein gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0898 Acife_0899 Acife_0899 Acife_0899 925474 925782 + hypothetical protein KEGG: afe:Lferr_0175 hypothetical protein gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0899 Acife_0900 Acife_0900 Acife_0900 926352 926844 + pseudogene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0900 Acife_0901 Acife_0901 Acife_0901 927619 927834 + hypothetical protein KEGG: afe:Lferr_0179 hypothetical protein gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0901 Acife_0902 Acife_0902 Acife_0902 928231 929520 + hypothetical protein KEGG: cph:Cpha266_2208 hypothetical protein gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0902 Acife_0903 Acife_0903 Acife_0903 929507 930196 + hypothetical protein KEGG: cph:Cpha266_2209 hypothetical protein gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0903 Acife_0904 Acife_0904 Acife_0904 930560 930900 - pseudogene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0904 Acife_0905 Acife_0905 Acife_0905 930945 932342 + sigma54 specific transcriptional regulator%2C Fis family KEGG: nhl:Nhal_1636 sigma-54 factor interaction domain-containing protein~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0905 Acife_0906 Acife_0906 Acife_0906 932397 933449 + hypothetical protein KEGG: azo:azo3030 hypothetical protein gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0906 Acife_0907 Acife_0907 Acife_0907 933542 934267 - hypothetical protein manually curated~KEGG: amv:ACMV_06460 hypothetical protein gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0907 Acife_0908 Acife_0908 Acife_0908 934529 934921 - hypothetical protein KEGG: afr:AFE_1834 hypothetical protein gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0908 Acife_0909 Acife_0909 Acife_0909 934927 935100 - pseudogene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0909 Acife_0910 Acife_0910 Acife_0910 935122 935541 - hypothetical protein gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0910 Acife_0911 Acife_0911 Acife_0911 935568 936116 - hypothetical protein KEGG: azo:azo3029 hypothetical protein gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0911 Acife_0912 Acife_0912 Acife_0912 936148 936861 - peptidase C39 bacteriocin processing PFAM: Peptidase C39%2C bacteriocin processing~KEGG: ppd:Ppro_2175 peptidase C39%2C bacteriocin processing gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0912 Acife_0913 Acife_0913 Acife_0913 936874 937233 - hypothetical protein KEGG: rpf:Rpic12D_0335 signal peptide protein gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0913 Acife_0914 Acife_0914 Acife_0914 937309 938361 - hypothetical protein KEGG: hmg:100209204 similar to predicted protein gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0914 Acife_0915 Acife_0915 Acife_0915 938778 941993 - diguanylate cyclase/phosphodiesterase with GAF sensor TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~KEGG: afr:AFE_1707 sensory box-containing diguanylate cyclase%2C putative~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B GAF gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0915 Acife_0916 Acife_0916 Acife_0916 942063 944222 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2%3B Type IV pilus assembly PilZ~KEGG: bph:Bphy_2377 cellulose synthase gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0916 Acife_0917 Acife_0917 Acife_0917 944250 945524 - diguanylate phosphodiesterase KEGG: mpo:Mpop_0886 diguanylate cyclase/phosphodiesterase~PFAM: Diguanylate phosphodiesterase%2C predicted~SMART: Diguanylate phosphodiesterase%2C predicted gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0917 Acife_0918 Acife_0918 Acife_0918 945999 946310 + pseudogene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0918 Acife_0919 Acife_0919 Acife_0919 946769 947797 - transposase IS116/IS110/IS902 family protein PFAM: Transposase%2C IS116/IS110/IS902%3B Transposase%2C IS111A/IS1328/IS1533~KEGG: afr:AFE_3183 ISAfe1%2C transposase gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0919 Acife_0920 Acife_0920 Acife_0920 947915 948364 + pseudogene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0920 Acife_0921 Acife_0921 Acife_0921 949661 949915 + hypothetical protein KEGG: afr:AFE_2495 hypothetical protein gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0921 Acife_0922 Acife_0922 Acife_0922 949996 950406 + hypothetical protein manually curated~KEGG: afr:AFE_2494 hypothetical protein gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0922 Acife_0923 Acife_0923 Acife_0923 950992 952488 + pseudogene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0923 Acife_0924 Acife_0924 Acife_0924 952518 952991 - 4-vinyl reductase 4VR PFAM: 4-vinyl reductase%2C 4VR~KEGG: mfs:MFS40622_1455 4-vinyl reductase 4VR gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0924 Acife_0925 Acife_0925 Acife_0925 953711 954809 + peptide chain release factor 2 manually curated~KEGG: ade:Adeh_0244 LigA gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0925 Acife_0926 Acife_0926 Acife_0926 954846 956336 + Lysyl-tRNA synthetase TIGRFAM: Lysyl-tRNA synthetase%2C class II~HAMAP: Lysyl-tRNA synthetase~KEGG: afr:AFE_0480 lysyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (D/K/N)%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0926 Acife_0927 Acife_0927 Acife_0927 956333 957577 + lipoprotein releasing system%2C transmembrane protein%2C LolC/E family KEGG: afr:AFE_0481 lipoprotein releasing system transmembrane protein LolC~TIGRFAM: Lipoprotein releasing system%2C transmembrane protein%2C LolC/E family~PFAM: Protein of unknown function DUF214%2C permase predicted gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0927 Acife_0928 Acife_0928 Acife_0928 957570 958265 + ABC transporter related protein KEGG: afr:AFE_0483 lipoprotein releasing system%2C ATP-binding protein LolD~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0928 Acife_0929 Acife_0929 Acife_0929 958262 958822 - Protein of unknown function DUF2062 PFAM: Protein of unknown function DUF2062~KEGG: afr:AFE_0482 hypothetical protein gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0929 Acife_0930 Acife_0930 Acife_0930 958903 961017 + ComEC/Rec2-related protein KEGG: afr:AFE_0484 DNA internalization-related competence protein ComEC/Rec2~TIGRFAM: ComEC/Rec2-related protein~PFAM: ComEC/Rec2-related protein gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0930 Acife_0931 Acife_0931 Acife_0931 961162 961782 + MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel~KEGG: afr:AFE_0485 MotA/TolQ/ExbB proton channel family protein gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0931 Acife_0932 Acife_0932 Acife_0932 961779 962183 + Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: afr:AFE_0486 biopolymer transport protein%2C ExbD/TolR family gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0932 Acife_0933 Acife_0933 Acife_0933 962214 962873 + protein of unknown function DUF374 PFAM: Protein of unknown function DUF374~KEGG: afe:Lferr_0647 hypothetical protein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0933 Acife_0934 Acife_0934 Acife_0934 962870 964015 + hypothetical protein KEGG: afr:AFE_0488 hypothetical protein gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0934 Acife_0935 Acife_0935 Acife_0935 964012 965010 + Tetraacyldisaccharide 4'-kinase TIGRFAM: Tetraacyldisaccharide 4'-kinase~HAMAP: Tetraacyldisaccharide 4'-kinase~KEGG: afr:AFE_0489 tetraacyldisaccharide 4'-kinase~PFAM: Tetraacyldisaccharide 4'-kinase gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0935 Acife_0936 Acife_0936 Acife_0936 965010 965192 + UPF0434 protein ycaR KEGG: afr:AFE_0490 hypothetical protein~HAMAP: UPF0434 protein ycaR~PFAM: Protein of unknown function DUF343 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0936 Acife_0937 Acife_0937 Acife_0937 965189 965950 + 3-deoxy-manno-octulosonate cytidylyltransferase TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase~HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase~KEGG: afr:AFE_0491 3-deoxy-D-manno-octulosonate cytidylyltransferase~PFAM: Acylneuraminate cytidylyltransferase gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0937 Acife_0938 Acife_0938 Acife_0938 965972 966493 + Inorganic pyrophosphatase KEGG: afr:AFE_0492 inorganic pyrophosphatase~HAMAP: Inorganic pyrophosphatase~PFAM: Inorganic pyrophosphatase gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0938 Acife_0939 Acife_0939 Acife_0939 966558 966938 + hypothetical protein KEGG: afr:AFE_0493 hypothetical protein gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0939 Acife_0940 Acife_0940 Acife_0940 967006 967162 - pseudogene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0940 Acife_0941 Acife_0941 Acife_0941 967315 967977 + hypothetical protein KEGG: tgr:Tgr7_1787 hypothetical protein gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0941 Acife_0942 Acife_0942 Acife_0942 968275 969363 + hypothetical protein gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0942 Acife_0943 Acife_0943 Acife_0943 969520 969804 + hypothetical protein gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0943 Acife_0944 Acife_0944 Acife_0944 970024 970230 + Uncharacterized protein family UPF0150 PFAM: Uncharacterised protein family UPF0150~KEGG: app:CAP2UW1_2579 hypothetical protein gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0944 Acife_0945 Acife_0945 Acife_0945 970223 970438 + YcfA family protein PFAM: YcfA-like~KEGG: app:CAP2UW1_2578 YcfA family protein gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0945 Acife_0946 Acife_0946 Acife_0946 970532 971074 + DinB family protein PFAM: DinB~KEGG: pfs:PFLU2952 hypothetical protein gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0946 Acife_0947 Acife_0947 Acife_0947 971161 971661 + transposase IS3/IS911 family protein KEGG: afe:Lferr_2023 transposase IS3/IS911 family protein gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0947 Acife_0948 Acife_0948 Acife_0948 971685 972707 + Integrase catalytic region KEGG: sbl:Sbal_4350 integrase catalytic subunit~manually curated~PFAM: Integrase%2C catalytic core gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0948 Acife_0949 Acife_0949 Acife_0949 973206 974546 + RNA-directed DNA polymerase (Reverse transcriptase) PFAM: RNA-directed DNA polymerase (reverse transcriptase)%3B Group II intron%2C maturase-specific~KEGG: gpb:HDN1F_31110 RNA-directed DNA polymerase gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0949 Acife_0950 Acife_0950 Acife_0950 974655 975266 + hypothetical protein KEGG: ccs:CCNA_01785 hypothetical protein gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0950 Acife_0951 Acife_0951 Acife_0951 975344 975553 + Uncharacterized protein family UPF0150 PFAM: Uncharacterised protein family UPF0150~KEGG: pph:Ppha_1441 protein of unknown function UPF0150 gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0951 Acife_0952 Acife_0952 Acife_0952 975557 975781 + YcfA family protein PFAM: YcfA-like~KEGG: cyc:PCC7424_2669 YcfA family protein gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0952 Acife_0953 Acife_0953 Acife_0953 976011 976213 + pseudogene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0953 Acife_0954 Acife_0954 Acife_0954 976236 976517 + protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: brh:RBRH_00853 hypothetical protein gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0954 Acife_0955 Acife_0955 Acife_0955 976514 977044 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: gpb:HDN1F_37230 GCN5-related N-acetyltransferase gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0955 Acife_0956 Acife_0956 Acife_0956 977416 978024 + Uracil-DNA glycosylase superfamily PFAM: Uracil-DNA glycosylase-like~KEGG: afe:Lferr_0676 uracil-DNA glycosylase superfamily gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0956 Acife_0957 Acife_0957 Acife_0957 978093 979568 - UPF0061 protein ydiU KEGG: afr:AFE_0519 hypothetical protein~HAMAP: UPF0061 protein ydiU~PFAM: Uncharacterised protein family UPF0061 gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0957 Acife_0958 Acife_0958 Acife_0958 979572 981830 - ATP-dependent Clp protease%2C ATP-binding subunit clpA TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA~PFAM: ATPase associated with various cellular activities%2C AAA-2%3B ATPase%2C AAA-type%2C core%3B Clp%2C N-terminal%3B Clp ATPase%2C C-terminal~KEGG: afr:AFE_0520 ATP-dependent Clp protease%2C ATP-binding subunit ClpA~SMART: ATPase%2C AAA+ type%2C core gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0958 Acife_0959 Acife_0959 Acife_0959 981834 982142 - ATP-dependent Clp protease adapter protein clpS manually curated~HAMAP: ATP-dependent Clp protease adapter protein clpS~KEGG: afr:AFE_0521 ATP-dependent Clp protease adaptor protein ClpS~PFAM: Adaptor protein ClpS%2C core gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0959 Acife_0960 Acife_0960 Acife_0960 982320 983096 - PpiC-type peptidyl-prolyl cis-trans isomerase PFAM: Peptidyl-prolyl cis-trans isomerase%2C PpiC-type~KEGG: afr:AFE_0522 peptidyl-prolyl cis-trans isomerase%2C PPIC-type gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0960 Acife_0961 Acife_0961 Acife_0961 983161 983727 - DJ-1 family protein KEGG: afr:AFE_0523 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme~TIGRFAM: DJ-1~PFAM: ThiJ/PfpI gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0961 Acife_0962 Acife_0962 Acife_0962 983866 985302 - carboxyl-terminal protease TIGRFAM: Peptidase S41A%2C C-terminal protease~PFAM: Peptidase S41%3B PDZ/DHR/GLGF~KEGG: afr:AFE_0524 carboxy-terminal peptidase~SMART: Peptidase S41%3B PDZ/DHR/GLGF gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0962 Acife_0963 Acife_0963 Acife_0963 985402 986817 - Peptidase M23 PFAM: Peptidase M23~KEGG: afr:AFE_0525 M23/M37 peptidase domain protein gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0963 Acife_0964 Acife_0964 Acife_0964 986821 988350 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase TIGRFAM: Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent~HAMAP: Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent~KEGG: afr:AFE_0526 phosphoglyceromutase~PFAM: BPG-independent PGAM%2C N-terminal%3B Metalloenzyme gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0964 Acife_0965 Acife_0965 Acife_0965 988418 990904 - glycogen/starch/alpha-glucan phosphorylase KEGG: afr:AFE_0527 glycogen/starch/alpha-glucan phosphorylase~TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase~PFAM: Glycosyl transferase%2C family 35 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0965 Acife_0966 Acife_0966 Acife_0966 991047 991499 + Host attachment protein PFAM: Host attachment protein~KEGG: afr:AFE_0528 hypothetical protein gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0966 Acife_0967 Acife_0967 Acife_0967 991499 991885 + Rhodanese-like protein KEGG: afr:AFE_0529 rhodanese-like domain protein~PFAM: Rhodanese-like~SMART: Rhodanese-like gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0967 Acife_0968 Acife_0968 Acife_0968 991898 992839 - PfkB domain protein PFAM: Carbohydrate/purine kinase~KEGG: afr:AFE_0530 carbohydrate kinase%2C PfkB family gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0968 Acife_0969 Acife_0969 Acife_0969 992962 993567 + hypothetical protein KEGG: afr:AFE_0531 hypothetical protein gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0969 Acife_0970 Acife_0970 Acife_0970 993709 994878 + S-adenosylmethionine synthase TIGRFAM: S-adenosylmethionine synthetase~HAMAP: S-adenosylmethionine synthase~KEGG: afr:AFE_0532 S-adenosylmethionine synthetase~PFAM: S-adenosylmethionine synthetase gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0970 Acife_0971 Acife_0971 Acife_0971 995066 996472 + Adenosylhomocysteinase TIGRFAM: S-adenosyl-L-homocysteine hydrolase~HAMAP: Adenosylhomocysteinase~KEGG: afe:Lferr_0691 S-adenosyl-L-homocysteine hydrolase~PFAM: S-adenosyl-L-homocysteine hydrolase%3B S-adenosyl-L-homocysteine hydrolase%2C NAD binding gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0971 Acife_0972 Acife_0972 Acife_0972 996472 997290 + 5%2C10-methylenetetrahydrofolate reductase KEGG: afr:AFE_0535 5%2C10-methylenetetrahydrofolate reductase~TIGRFAM: 5%2C10-methylenetetrahydrofolate reductase~PFAM: Methylenetetrahydrofolate reductase gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0972 Acife_0973 Acife_0973 Acife_0973 997446 998318 + phosphoribulokinase/uridine kinase PFAM: Phosphoribulokinase/uridine kinase~KEGG: afr:AFE_0536 phosphoribulokinase gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0973 Acife_0974 Acife_0974 Acife_0974 998527 999534 - sodium/calcium exchanger membrane region PFAM: Sodium/calcium exchanger membrane region~KEGG: afr:AFE_0587 sodium/calcium exchanger gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0974 Acife_0975 Acife_0975 Acife_0975 999844 1001682 + DEAD/DEAH box helicase domain protein KEGG: afr:AFE_0589 ATP-dependent RNA helicase%2C DEAD/DEAH box family~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal%3B DbpA%2C RNA-binding~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0975 Acife_0976 Acife_0976 Acife_0976 1001777 1001980 - cold-shock DNA-binding domain protein KEGG: afr:AFE_0590 cold-shock protein~PFAM: Cold-shock protein%2C DNA-binding~SMART: Cold shock protein gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0976 Acife_0977 Acife_0977 Acife_0977 1002083 1004245 - primosomal protein N' TIGRFAM: Primosomal protein n~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal~KEGG: afr:AFE_0591 primosomal protein N`~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0977 Acife_0978 Acife_0978 Acife_0978 1004513 1005415 - 4-hydroxybenzoate octaprenyltransferase TIGRFAM: 4-hydroxybenzoate polyprenyl transferase~HAMAP: 4-hydroxybenzoate octaprenyltransferase~KEGG: afr:AFE_0592 4-hydroxybenzoate polyprenyl transferase~PFAM: UbiA prenyltransferase gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0978 Acife_0979 Acife_0979 Acife_0979 1005415 1005993 - Chorismate lyase PFAM: Chorismate--pyruvate lyase~KEGG: afe:Lferr_0745 chorismate lyase gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0979 Acife_0980 Acife_0980 Acife_0980 1006028 1006612 - phosphatidylethanolamine N-methyltransferase%2C putative KEGG: afr:AFE_0594 phosphatidylethanolamine N-methyltransferase%2C putative gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0980 Acife_0981 Acife_0981 Acife_0981 1006773 1007153 + lipoprotein%2C putative KEGG: afr:AFE_0595 lipoprotein%2C putative gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0981 Acife_0982 Acife_0982 Acife_0982 1007238 1008593 + (Dimethylallyl)adenosine tRNA methylthiotransferase miaB SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB%3B Methylthiotransferase~KEGG: afr:AFE_0596 (dimethylallyl)adenosine tRNA methylthiotransferase~HAMAP: tRNA-i(6)A37 modification enzyme MiaB~PFAM: Methylthiotransferase%2C N-terminal%3B Radical SAM%3B Deoxyribonuclease/rho motif-related TRAM gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0982 Acife_0983 Acife_0983 Acife_0983 1008598 1009581 + PhoH family protein PFAM: PhoH-like protein~KEGG: afr:AFE_0597 PhoH-like protein gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0983 Acife_0984 Acife_0984 Acife_0984 1009578 1010075 + metalloprotease ybeY TIGRFAM: Uncharacterised protein family UPF0054~HAMAP: Uncharacterised protein family UPF0054~KEGG: afe:Lferr_0750 hypothetical protein~PFAM: Uncharacterised protein family UPF0054 gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0984 Acife_0985 Acife_0985 Acife_0985 1010068 1010952 + CBS domain containing protein KEGG: afe:Lferr_0751 CBS domain-containing protein~PFAM: Cystathionine beta-synthase%2C core%3B Transporter-associated region~SMART: Cystathionine beta-synthase%2C core gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0985 Acife_0986 Acife_0986 Acife_0986 1010949 1012469 + Apolipoprotein N-acyltransferase TIGRFAM: Apolipoprotein N-acyltransferase~HAMAP: Apolipoprotein N-acyltransferase~KEGG: afe:Lferr_0752 apolipoprotein N-acyltransferase~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0986 Acife_0987 Acife_0987 Acife_0987 1012438 1013784 - peptidase U62 modulator of DNA gyrase PFAM: Peptidase U62%2C modulator of DNA gyrase~KEGG: afr:AFE_0600 PmbA protein gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0987 Acife_0988 Acife_0988 Acife_0988 1013957 1015006 + ABC-type metal ion transporter%2C periplasmic subunit PFAM: ABC transporter metal-binding lipoprotein~KEGG: afe:Lferr_0754 periplasmic solute-binding protein gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0988 Acife_0989 Acife_0989 Acife_0989 1015020 1015844 + ABC transporter related protein KEGG: afr:AFE_0603 cation ABC transporter%2C ATP-binding protein%2C putative~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0989 Acife_0990 Acife_0990 Acife_0990 1015849 1016754 + ABC-type transporter%2C integral membrane subunit PFAM: ABC-3~KEGG: afe:Lferr_0756 ABC-3 protein gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0990 Acife_0991 Acife_0991 Acife_0991 1016758 1017567 + ABC-type transporter%2C integral membrane subunit PFAM: ABC-3~KEGG: afr:AFE_0605 cation ABC transporter%2C permease protein%2C putative gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0991 Acife_0992 Acife_0992 Acife_0992 1017601 1018782 - hypothetical protein KEGG: afr:AFE_0606 hypothetical protein gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0992 Acife_0993 Acife_0993 Acife_0993 1018775 1019629 - hypothetical protein KEGG: afr:AFE_0607 hypothetical protein gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0993 Acife_0994 Acife_0994 Acife_0994 1019849 1020862 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: afr:AFE_0609 NAD-dependent epimerase/dehydratase family protein gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0994 Acife_0995 Acife_0995 Acife_0995 1020859 1021104 - hypothetical protein KEGG: afr:AFE_0610 hypothetical protein gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0995 Acife_0996 Acife_0996 Acife_0996 1021176 1022396 - hypothetical protein KEGG: afr:AFE_0611 hypothetical protein gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0996 Acife_0997 Acife_0997 Acife_0997 1022389 1023243 - hypothetical protein KEGG: afr:AFE_0607 hypothetical protein gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0997 Acife_0998 Acife_0998 Acife_0998 1023550 1023888 + hypothetical protein KEGG: afe:Lferr_0764 hypothetical protein gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0998 Acife_0999 Acife_0999 Acife_0999 1023888 1025306 + Glycosyltransferase 28 domain-containing protein PFAM: Glycosyl transferase%2C family 28%2C C-terminal~KEGG: afe:Lferr_0765 glycosyl transferase-like protein gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_0999 Acife_1000 Acife_1000 Acife_1000 1025303 1026565 + glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: afr:AFE_0615 glycosyl transferase%2C group 1 gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1000 Acife_1001 Acife_1001 Acife_1001 1026562 1027806 + glycosyl transferase group 1 KEGG: afr:AFE_0616 glycosyltransferase%2C group 1~manually curated~PFAM: Glycosyl transferase%2C group 1 gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1001 Acife_1002 Acife_1002 Acife_1002 1027806 1029635 + ABC transporter related protein KEGG: afr:AFE_0617 ABC transporter%2C permease/ATP-binding protein~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~SMART: ATPase%2C AAA+ type%2C core gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1002 Acife_1003 Acife_1003 Acife_1003 1029632 1030936 + nucleotide sugar dehydrogenase KEGG: afr:AFE_0618 UDP-glucose/GDP-mannose dehydrogenase family protein~TIGRFAM: Nucleotide sugar dehydrogenase~PFAM: UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal%3B UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation%3B UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1003 Acife_1004 Acife_1004 Acife_1004 1030976 1031818 + hypothetical protein KEGG: afr:AFE_0619 hypothetical protein gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1004 Acife_1005 Acife_1005 Acife_1005 1031830 1032468 + alpha-ribazole phosphatase KEGG: afr:AFE_0621 phosphoglycerate mutase family protein~TIGRFAM: Alpha-ribazole phosphatase%2C CobC~PFAM: Phosphoglycerate mutase gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1005 Acife_1006 Acife_1006 Acife_1006 1032465 1033250 - hypothetical protein KEGG: afr:AFE_0620 hypothetical protein gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1006 Acife_1007 Acife_1007 Acife_1007 1033416 1034201 - helix-turn-helix domain protein KEGG: afr:AFE_0622 hypothetical protein~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1007 Acife_1008 Acife_1008 Acife_1008 1034333 1035133 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: afr:AFE_0623 methyltransferase%2C UbiE/COQ5 family gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1008 Acife_1009 Acife_1009 Acife_1009 1035145 1036557 + 3-isopropylmalate dehydratase large subunit TIGRFAM: 3-isopropylmalate dehydratase%2C large subunit region~HAMAP: 3-isopropylmalate dehydratase%2C large subunit region~KEGG: afr:AFE_0624 isopropylmalate isomerase large subunit~PFAM: Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1009 Acife_1010 Acife_1010 Acife_1010 1036705 1037352 + 3-isopropylmalate dehydratase small subunit TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit region~HAMAP: 3-isopropylmalate dehydratase%2C small subunit region~KEGG: afr:AFE_0626 isopropylmalate isomerase small subunit~PFAM: Aconitase A/isopropylmalate dehydratase small subunit%2C swivel gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1010 Acife_1011 Acife_1011 Acife_1011 1037349 1037660 + hypothetical protein KEGG: afr:AFE_0627 hypothetical protein gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1011 Acife_1012 Acife_1012 Acife_1012 1037670 1038326 - Pyridoxine/pyridoxamine 5'-phosphate oxidase TIGRFAM: Pyridoxamine 5'-phosphate oxidase~HAMAP: Pyridoxamine 5'-phosphate oxidase~KEGG: afr:AFE_0628 pyridoxamine 5'-phosphate oxidase~PFAM: Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain%3B Pyridoxine 5'-phosphate oxidase%2C dimerisation%2C C-terminal gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1012 Acife_1013 Acife_1013 Acife_1013 1038354 1039754 - Ribose-5-phosphate isomerase A TIGRFAM: Ribose 5-phosphate isomerase~HAMAP: Ribose-5-phosphate isomerase%2C subgroup~KEGG: afr:AFE_0629 ribose 5-phosphate isomerase A~PFAM: Ribose 5-phosphate isomerase%3B ThiJ/PfpI gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1013 Acife_1014 Acife_1014 Acife_1014 1040299 1040622 + hypothetical protein gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1014 Acife_1015 Acife_1015 Acife_1015 1040623 1041588 + cytochrome c oxidase subunit II PFAM: Cytochrome c oxidase subunit II C-terminal~KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase%2C subunit II gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1015 Acife_1016 Acife_1016 Acife_1016 1041607 1043640 + cytochrome c oxidase subunit I PFAM: Cytochrome c oxidase%2C subunit I~KEGG: afe:Lferr_0782 cytochrome-c oxidase gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1016 Acife_1017 Acife_1017 Acife_1017 1043825 1044460 + cytochrome c oxidase subunit III PFAM: Cytochrome c oxidase%2C subunit III~KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase%2C subunit III gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1017 Acife_1018 Acife_1018 Acife_1018 1044457 1044822 + cytochrome o ubiquinol oxidase%2C subunit IV KEGG: afr:AFE_0634 cytochrome o ubiquinol oxidase%2C subunit IV gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1018 Acife_1019 Acife_1019 Acife_1019 1044863 1045105 + pseudogene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1019 Acife_1020 Acife_1020 Acife_1020 1045123 1046067 + Protoheme IX farnesyltransferase TIGRFAM: Protohaem IX farnesyltransferase~HAMAP: Protohaem IX farnesyltransferase~KEGG: afr:AFE_3143 protoheme IX farnesyltransferase~PFAM: UbiA prenyltransferase gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1020 Acife_1021 Acife_1021 Acife_1021 1046108 1046248 + hypothetical protein gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1021 Acife_1022 Acife_1022 Acife_1022 1046255 1047085 - Undecaprenyl-diphosphatase KEGG: afr:AFE_0636 undecaprenyl pyrophosphate phosphatase~HAMAP: Undecaprenyl-diphosphatase~PFAM: Bacitracin resistance protein BacA gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1022 Acife_1023 Acife_1023 Acife_1023 1047097 1047573 - transcription elongation factor GreA TIGRFAM: Prokaryotic transcription elongation factor GreA~HAMAP: Transcription elongation factor greA~KEGG: afr:AFE_0638 transcription elongation factor GreA~PFAM: Transcription elongation factor%2C GreA/GreB region%2C prokaryotic gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1023 Acife_1024 Acife_1024 Acife_1024 1047576 1050809 - carbamoyl-phosphate synthase%2C large subunit KEGG: afr:AFE_0639 carbamoyl-phosphate synthase%2C large subunit~TIGRFAM: Carbamoyl phosphate synthase%2C large subunit%2C glutamine-dependent~PFAM: Carbamoyl phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl phosphate synthase%2C large subunit%2C N-terminal%3B Carbamoyl phosphate synthetase%2C large subunit%2C oligomerisation%3B MGS-like gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1024 Acife_1025 Acife_1025 Acife_1025 1050802 1051944 - carbamoyl-phosphate synthase%2C small subunit KEGG: afr:AFE_0640 carbamoyl-phosphate synthase%2C small subunit~TIGRFAM: Carbamoyl phosphate synthase%2C small subunit~PFAM: Carbamoyl phosphate synthase%2C small subunit%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1025 Acife_1026 Acife_1026 Acife_1026 1052181 1052867 + hypothetical protein KEGG: afr:AFE_0641 hypothetical protein gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1026 Acife_1027 Acife_1027 Acife_1027 1053145 1053825 + metallo-beta-lactamase family protein KEGG: afr:AFE_0956 metallo-beta-lactamase family protein gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1027 Acife_1028 Acife_1028 Acife_1028 1053880 1054851 + cytochrome c oxidase subunit II PFAM: Cytochrome c oxidase subunit II C-terminal~KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase%2C subunit II gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1028 Acife_1029 Acife_1029 Acife_1029 1054853 1057000 + cytochrome c oxidase subunit I PFAM: Cytochrome c oxidase%2C subunit I~KEGG: afe:Lferr_0782 cytochrome-c oxidase gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1029 Acife_1030 Acife_1030 Acife_1030 1057072 1057710 + cytochrome c oxidase subunit III PFAM: Cytochrome c oxidase%2C subunit III~KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase%2C subunit III gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1030 Acife_1031 Acife_1031 Acife_1031 1057707 1058093 + cytochrome o ubiquinol oxidase%2C subunit IV KEGG: afr:AFE_0634 cytochrome o ubiquinol oxidase%2C subunit IV gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1031 Acife_1032 Acife_1032 Acife_1032 1058186 1058443 + hypothetical protein gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1032 Acife_1033 Acife_1033 Acife_1033 1058758 1059342 + DsbG domain protein KEGG: afr:AFE_2246 DsbG domain protein gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1033 Acife_1034 Acife_1034 Acife_1034 1059360 1060367 - hypothetical protein KEGG: hya:HY04AAS1_0222 hypothetical protein gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1034 Acife_1035 Acife_1035 Acife_1035 1060576 1060668 + pseudogene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1035 Acife_1036 Acife_1036 Acife_1036 1061054 1062346 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: sli:Slin_1967 integrase family protein gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1036 Acife_1037 Acife_1037 Acife_1037 1062480 1062800 + hypothetical protein KEGG: noc:Noc_0284 hypothetical protein gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1037 Acife_1038 Acife_1038 Acife_1038 1062787 1063098 + transcriptional regulator%2C XRE family KEGG: noc:Noc_0283 XRE family transcriptional regulator~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1038 Acife_1039 Acife_1039 Acife_1039 1063208 1064074 + hypothetical protein gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1039 Acife_1040 Acife_1040 Acife_1040 1064238 1064435 + hypothetical protein gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1040 Acife_1041 Acife_1041 Acife_1041 1064432 1064638 + hypothetical protein gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1041 Acife_1042 Acife_1042 Acife_1042 1064635 1065573 + hypothetical protein KEGG: alv:Alvin_1702 hypothetical protein gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1042 Acife_1043 Acife_1043 Acife_1043 1065573 1066925 + hypothetical protein KEGG: nwi:Nwi_1258 hypothetical protein gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1043 Acife_1044 Acife_1044 Acife_1044 1067026 1067997 - AAA ATPase SMART: ATPase%2C AAA+ type%2C core~KEGG: psp:PSPPH_B0059 ExeA-like protein gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1044 Acife_1045 Acife_1045 Acife_1045 1067987 1069651 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: psp:PSPPH_B0058 phage integrase family site specific recombinase gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1045 Acife_1046 Acife_1046 Acife_1046 1069632 1070207 - Resolvase domain-containing protein PFAM: Resolvase%2C N-terminal%3B Resolvase%2C helix-turn-helix region~KEGG: psp:PSPPH_B0057 resolvase%2C putative gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1046 Acife_1047 Acife_1047 Acife_1047 1070480 1071115 + hypothetical protein KEGG: cph:Cpha266_2066 hypothetical protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1047 Acife_1048 Acife_1048 Acife_1048 1071117 1071551 + hypothetical protein gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1048 Acife_1049 Acife_1049 Acife_1049 1071544 1071744 + hypothetical protein gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1049 Acife_1050 Acife_1050 Acife_1050 1071741 1071974 + hypothetical protein gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1050 Acife_1051 Acife_1051 Acife_1051 1072132 1072782 + hypothetical protein KEGG: rso:RSc2475 hypothetical protein gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1051 Acife_1052 Acife_1052 Acife_1052 1073509 1073865 - hypothetical protein KEGG: afr:AFE_2325 hypothetical protein gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1052 Acife_1053 Acife_1053 Acife_1053 1073881 1075512 - phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III%3B Alpha-D-phosphohexomutase%2C C-terminal~KEGG: afr:AFE_2324 phosphoglucomutase gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1053 Acife_1054 Acife_1054 Acife_1054 1075521 1075790 - plasmid related protein KEGG: sus:Acid_7627 plasmid related protein gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1054 Acife_1055 Acife_1055 Acife_1055 1075833 1076723 - hypothetical protein KEGG: afr:AFE_2323 hypothetical protein gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1055 Acife_1056 Acife_1056 Acife_1056 1076745 1077707 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: afe:Lferr_1961 NAD-dependent epimerase/dehydratase gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1056 Acife_1057 Acife_1057 Acife_1057 1077707 1078792 - Luciferase-like%2C subgroup PFAM: Luciferase-like%2C subgroup~KEGG: afr:AFE_2321 monooxygenase%2C luciferase-like protein gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1057 Acife_1058 Acife_1058 Acife_1058 1078950 1079522 - Oligoribonuclease HAMAP: Oligoribonuclease~PFAM: Exonuclease%2C RNase T/DNA polymerase III~KEGG: afr:AFE_2320 oligoribonuclease Orn~SMART: Exonuclease gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1058 Acife_1059 Acife_1059 Acife_1059 1079789 1080472 + two component transcriptional regulator%2C winged helix family KEGG: afr:AFE_2319 DNA-binding response regulator~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1059 Acife_1060 Acife_1060 Acife_1060 1080469 1081764 + integral membrane sensor signal transduction histidine kinase KEGG: afe:Lferr_1957 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1060 Acife_1061 Acife_1061 Acife_1061 1081979 1082524 + outer membrane lipoprotein Slp PFAM: Outer membrane lipoprotein Slp~KEGG: afr:AFE_2316 outer membrane lipoprotein Slp%2C putative gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1061 Acife_1062 Acife_1062 Acife_1062 1082755 1083270 + hypothetical protein KEGG: afr:AFE_2272 hypothetical protein gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1062 Acife_1063 Acife_1063 Acife_1063 1083450 1084133 + MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel~KEGG: afr:AFE_2270 MotA/TolQ/ExbB proton channel family protein gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1063 Acife_1064 Acife_1064 Acife_1064 1084133 1084534 + Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: afr:AFE_2269 biopolymer transport protein%2C ExbD/TolR family gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1064 Acife_1065 Acife_1065 Acife_1065 1084644 1085375 + TonB family protein KEGG: afr:AFE_2268 TonB family protein~manually curated~TIGRFAM: TonB%2C C-terminal gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1065 Acife_1066 Acife_1066 Acife_1066 1085421 1086992 + phosphoesterase PFAM: Phosphoesterase~KEGG: afr:AFE_2267 phosphoesterase family protein gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1066 Acife_1067 Acife_1067 Acife_1067 1086999 1087614 - pseudogene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1067 Acife_1068 Acife_1068 Acife_1068 1087730 1088821 - Dihydroorotate dehydrogenase TIGRFAM: Dihydroorotate dehydrogenase%2C class 2~HAMAP: Dihydroorotate dehydrogenase~KEGG: afr:AFE_2264 dihydroorotate dehydrogenase~PFAM: Dihydroorotate dehydrogenase%2C class 1/ 2 gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1068 Acife_1069 Acife_1069 Acife_1069 1088818 1089708 - Coproporphyrinogen-III oxidase%2C aerobic KEGG: afr:AFE_2263 coproporphyrinogen III oxidase~HAMAP: Coproporphyrinogen-III oxidase%2C aerobic~PFAM: Coproporphyrinogen III oxidase gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1069 Acife_1070 Acife_1070 Acife_1070 1089713 1090273 - ribosome maturation factor rimN KEGG: afr:AFE_2262 SUA5/YciO/YrdC family protein~HAMAP: ribosome maturation factor rimN~PFAM: Sua5/YciO/YrdC%2C N-terminal gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1070 Acife_1071 Acife_1071 Acife_1071 1090289 1091551 - Phosphoribosylamine--glycine ligase TIGRFAM: Phosphoribosylglycinamide synthetase~HAMAP: Phosphoribosylglycinamide synthetase~KEGG: afr:AFE_2261 phosphoribosylamine--glycine ligase~PFAM: Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C N-domain%3B Phosphoribosylglycinamide synthetase%2C C-domain gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1071 Acife_1072 Acife_1072 Acife_1072 1091565 1093130 - Bifunctional purine biosynthesis protein purH SMART: AICARFT/IMPCHase bienzyme%2C formylation region~TIGRFAM: AICARFT/IMPCHase bienzyme~KEGG: afr:AFE_2260 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase~HAMAP: Bifunctional purine biosynthesis protein purH~PFAM: AICARFT/IMPCHase bienzyme%2C formylation region%3B MGS-like gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1072 Acife_1073 Acife_1073 Acife_1073 1093515 1094306 + metallo-beta-lactamase family protein KEGG: afr:AFE_2256 metallo-beta-lactamase family protein gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1073 Acife_1074 Acife_1074 Acife_1074 1094319 1094687 + hypothetical protein KEGG: afe:Lferr_1902 hypothetical protein gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1074 Acife_1075 Acife_1075 Acife_1075 1094714 1095334 - Potassium-transporting ATPase C chain TIGRFAM: Potassium transporting ATPase%2C C subunit~HAMAP: Potassium transporting ATPase%2C C subunit~KEGG: afr:AFE_2473 K+-transporting ATPase%2C C subunit~PFAM: Potassium transporting ATPase%2C C subunit gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1075 Acife_1076 Acife_1076 Acife_1076 1095347 1097416 - Potassium-transporting ATPase B chain TIGRFAM: Potassium-transporting ATPase%2C B chain%3B ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~HAMAP: Potassium-transporting ATPase%2C B chain~KEGG: afr:AFE_2474 K+-transporting ATPase%2C B subunit~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B Haloacid dehalogenase-like hydrolase gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1076 Acife_1077 Acife_1077 Acife_1077 1097429 1099180 - Potassium-transporting ATPase A chain TIGRFAM: ATPase%2C K+ transporting%2C A subunit~HAMAP: ATPase%2C K+ transporting%2C A subunit~KEGG: afr:AFE_2475 K+-transporting ATPase%2C A subunit~PFAM: ATPase%2C K+ transporting%2C A subunit gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1077 Acife_1078 Acife_1078 Acife_1078 1099177 1099269 - K+-transporting ATPase%2C F subunit TIGRFAM: ATPase%2C P-type%2C K+-transporting%2C F subunit~KEGG: afr:AFE_2231 K+-transporting ATPase%2C F subunit gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1078 Acife_1079 Acife_1079 Acife_1079 1099266 1099358 - hypothetical protein KEGG: afr:AFE_2230 hypothetical protein gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1079 Acife_1080 Acife_1080 Acife_1080 1099630 1102371 + osmosensitive K+ channel signal transduction histidine kinase KEGG: afr:AFE_2229 sensor histidine kinase KdpD~PFAM: Signal transduction histidine kinase%2C osmosensitive K+ channel sensor%2C N-terminal%3B UspA%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B ATP-binding region%2C ATPase-like~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1080 Acife_1081 Acife_1081 Acife_1081 1102375 1103118 + two component transcriptional regulator%2C winged helix family KEGG: afr:AFE_2228 DNA-binding response regulator KdpE~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1081 Acife_1082 Acife_1082 Acife_1082 1103172 1103918 - Haloacid dehalogenase domain protein hydrolase PFAM: Haloacid dehalogenase-like hydrolase~KEGG: afe:Lferr_1882 haloacid dehalogenase domain-containing protein hydrolase gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1082 Acife_1083 Acife_1083 Acife_1083 1103923 1104921 - aminoglycoside phosphotransferase PFAM: Aminoglycoside phosphotransferase~KEGG: afr:AFE_2226 hypothetical protein gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1083 Acife_1084 Acife_1084 Acife_1084 1104940 1105572 - hypothetical protein KEGG: afe:Lferr_1880 hypothetical protein gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1084 Acife_1085 Acife_1085 Acife_1085 1105628 1107226 + amino acid permease-associated region PFAM: Amino acid permease-associated region~KEGG: afr:AFE_2457 amino acid permease family protein gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1085 Acife_1086 Acife_1086 Acife_1086 1107240 1107326 - pseudogene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1086 Acife_1087 Acife_1087 Acife_1087 1107403 1107501 - hypothetical protein gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1087 Acife_1088 Acife_1088 Acife_1088 1107625 1110339 - diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~KEGG: tin:Tint_2563 diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1088 Acife_1089 Acife_1089 Acife_1089 1110601 1113090 - glycosyl transferase family 51 PFAM: Glycosyl transferase%2C family 51%3B Penicillin-binding protein%2C transpeptidase~KEGG: afr:AFE_2223 penicillin-binding protein 1A%2C putative gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1089 Acife_1090 Acife_1090 Acife_1090 1113191 1114615 + glutamyl-tRNA synthetase KEGG: afr:AFE_2222 glutamyl-tRNA synthetase~TIGRFAM: Glutamyl-tRNA synthetase%2C class Ic%2C bacterial/mitochondrial~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1090 Acife_1091 Acife_1091 Acife_1091 1114636 1116024 + cysteinyl-tRNA synthetase KEGG: afr:AFE_2221 cysteinyl-tRNA synthetase~TIGRFAM: Cysteinyl-tRNA synthetase%2C class Ia~PFAM: Cysteinyl-tRNA synthetase%2C class Ia%2C N-terminal%3B Cysteinyl-tRNA synthetase%2C class Ia%2C DALR gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1091 Acife_1092 Acife_1092 Acife_1092 1116067 1118376 - ribonuclease%2C Rne/Rng family KEGG: afr:AFE_2220 ribonuclease%2C Rne/Rng family~TIGRFAM: Ribonuclease E/G~PFAM: RNA-binding protein AU-1/Ribonuclease E/G%3B Ribosomal protein S1%2C RNA binding domain gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1092 Acife_1093 Acife_1093 Acife_1093 1118577 1119530 + pseudouridine synthase%2C RluA family TIGRFAM: Pseudouridine synthase%2C RluC/RluD~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4~KEGG: afr:AFE_2219 ribosomal large subunit pseudouridine synthase C~SMART: RNA-binding S4 gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1093 Acife_1094 Acife_1094 Acife_1094 1119527 1120542 + pseudogene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1094 Acife_1095 Acife_1095 Acife_1095 1120632 1121429 - inositol monophosphatase PFAM: Inositol monophosphatase~KEGG: afr:AFE_0669 inositol monophosphate family protein gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1095 Acife_1096 Acife_1096 Acife_1096 1121484 1122272 + RNA methyltransferase%2C TrmH family%2C group 1 KEGG: afr:AFE_0670 RNA methyltransferase%2C TrmH family%2C group 1~TIGRFAM: RNA methyltransferase TrmH%2C group 1~PFAM: tRNA/rRNA methyltransferase%2C SpoU gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1096 Acife_1097 Acife_1097 Acife_1097 1122272 1123066 + serine O-acetyltransferase TIGRFAM: Serine O-acetyltransferase~KEGG: afe:Lferr_0820 serine O-acetyltransferase gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1097 Acife_1098 Acife_1098 Acife_1098 1123113 1123601 + transcriptional regulator%2C BadM/Rrf2 family KEGG: afr:AFE_0672 iron-sulfur cluster assembly transcription factor IscR~TIGRFAM: Transcriptional regulator%2C Rrf2~PFAM: Transcriptional regulator%2C Rrf2 gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1098 Acife_1099 Acife_1099 Acife_1099 1123620 1124885 + Cysteine desulfurase TIGRFAM: Cysteine desulfurase~HAMAP: Cysteine desulfurase~KEGG: afe:Lferr_0822 cysteine desulfurase IscS~PFAM: Aminotransferase%2C class V/Cysteine desulfurase gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1099 Acife_1100 Acife_1100 Acife_1100 1124910 1125341 + FeS cluster assembly scaffold IscU KEGG: afr:AFE_0674 FeS cluster assembly scaffold protein IscU~TIGRFAM: ISC system FeS cluster assembly%2C IscU scaffold~PFAM: NIF system FeS cluster assembly%2C NifU%2C N-terminal gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1100 Acife_1101 Acife_1101 Acife_1101 1125351 1125674 + iron-sulfur cluster assembly protein IscA KEGG: afr:AFE_0675 iron-sulfur cluster assembly protein IscA~TIGRFAM: ISC system FeS cluster assembly%2C IscA scaffold%3B FeS cluster insertion~PFAM: FeS cluster biogenesis gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1101 Acife_1102 Acife_1102 Acife_1102 1125674 1126291 + Co-chaperone protein hscB TIGRFAM: Co-chaperone Hsc20~HAMAP: Co-chaperone protein hscB~KEGG: afe:Lferr_0825 co-chaperone Hsc20~PFAM: Heat shock cognate protein B%2C C-terminal oligomerisation%3B Heat shock protein DnaJ%2C N-terminal gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1102 Acife_1103 Acife_1103 Acife_1103 1126372 1128237 + Chaperone protein hscA TIGRFAM: ISC system FeS cluster assembly%2C HscA chaperone~HAMAP: ISC system FeS cluster assembly%2C HscA chaperone~KEGG: afr:AFE_0677 chaperone protein HscA~PFAM: Heat shock protein 70 gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1103 Acife_1104 Acife_1104 Acife_1104 1128238 1128576 + ferredoxin%2C 2Fe-2S type%2C ISC system KEGG: afr:AFE_0678 ferredoxin%2C 2Fe-2S~TIGRFAM: Ferredoxin%2C 2Fe-2S type~PFAM: Ferredoxin gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1104 Acife_1105 Acife_1105 Acife_1105 1128576 1128770 + FeS assembly protein IscX KEGG: afr:AFE_0679 hypothetical protein~TIGRFAM: ISC system FeS cluster assembly%2C IscX~PFAM: ISC system FeS cluster assembly%2C IscX gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1105 Acife_1106 Acife_1106 Acife_1106 1128784 1129842 + tRNA-specific 2-thiouridylase mnmA TIGRFAM: tRNA-specific 2-thiouridylase~HAMAP: tRNA-specific 2-thiouridylase~KEGG: afr:AFE_0680 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase~PFAM: tRNA methyl transferase-like gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1106 Acife_1107 Acife_1107 Acife_1107 1129861 1130760 - Patatin PFAM: Patatin~KEGG: afr:AFE_0681 patatin-like phospholipase family protein gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1107 Acife_1108 Acife_1108 Acife_1108 1131016 1131258 + prevent-host-death family protein TIGRFAM: Prevent-host-death protein~KEGG: sfu:Sfum_1406 prevent-host-death family protein gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1108 Acife_1109 Acife_1109 Acife_1109 1131258 1131680 + hypothetical protein KEGG: amv:ACMV_26750 hypothetical protein gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1109 Acife_1110 Acife_1110 Acife_1110 1131703 1131831 + hypothetical protein KEGG: tye:THEYE_A1689 type I restriction enzyme EcoKI M protein gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1110 Acife_1111 Acife_1111 Acife_1111 1131831 1132685 + S-formylglutathione hydrolase KEGG: afr:AFE_0698 S-formylglutathione hydrolase~TIGRFAM: S-formylglutathione hydrolase~PFAM: Putative esterase gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1111 Acife_1112 Acife_1112 Acife_1112 1132783 1132983 + thiamine biosynthesis protein ThiS KEGG: afr:AFE_0642 thiamine biosynthesis protein ThiS~TIGRFAM: ThiS%2C thiamine-biosynthesis~PFAM: ThiamineS gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1112 Acife_1113 Acife_1113 Acife_1113 1133028 1133810 + Thiazole synthase KEGG: afr:AFE_0643 thiamin biosynthesis protein ThiG~HAMAP: Thiazole biosynthesis~PFAM: Thiazole biosynthesis gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1113 Acife_1114 Acife_1114 Acife_1114 1133791 1134381 + hypothetical protein KEGG: afr:AFE_0644 hypothetical protein gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1114 Acife_1115 Acife_1115 Acife_1115 1134395 1135762 + UDP-N-acetylmuramate manually curated~TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase~KEGG: afr:AFE_0645 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase~PFAM: Mur ligase%2C N-terminal%3B Mur ligase%2C central%3B Mur ligase%2C C-terminal gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1115 Acife_1116 Acife_1116 Acife_1116 1135793 1136434 + 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KEGG: afr:AFE_0647 3-octaprenyl-4-hydroxybenzoate carboxy-lyase%2C putative~TIGRFAM: Phenylacrylic acid decarboxylase~PFAM: Flavoprotein gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1116 Acife_1117 Acife_1117 Acife_1117 1136451 1137236 - ABC transporter related protein KEGG: afr:AFE_0646 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1117 Acife_1118 Acife_1118 Acife_1118 1137236 1138345 - protein of unknown function DUF140 KEGG: afr:AFE_0648 ABC transporter%2C permease protein%2C putative~TIGRFAM: Protein of unknown function DUF140~PFAM: Protein of unknown function DUF140 gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1118 Acife_1119 Acife_1119 Acife_1119 1138417 1138923 + Water Stress and Hypersensitive response domain-containing protein SMART: Water Stress/Hypersensitive response domain~KEGG: afr:AFE_0650 hypothetical protein gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1119 Acife_1120 Acife_1120 Acife_1120 1138868 1139659 - Endonuclease/exonuclease/phosphatase PFAM: Endonuclease/exonuclease/phosphatase~KEGG: afe:Lferr_0800 endonuclease/exonuclease/phosphatase gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1120 Acife_1121 Acife_1121 Acife_1121 1139637 1139987 - hypothetical protein KEGG: afr:AFE_0651 hypothetical protein gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1121 Acife_1122 Acife_1122 Acife_1122 1139984 1140739 - UBA/THIF-type NAD/FAD binding protein PFAM: UBA/THIF-type NAD/FAD binding fold%3B MoeZ/MoeB~KEGG: afr:AFE_0652 molybdopterin biosynthesis MoeB protein gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1122 Acife_1123 Acife_1123 Acife_1123 1140732 1141175 - hypothetical protein KEGG: tgr:Tgr7_3241 hypothetical protein gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1123 Acife_1124 Acife_1124 Acife_1124 1141235 1142377 - Protein of unknown function DUF2006 KEGG: afr:AFE_0653 hypothetical protein~manually curated~PFAM: Protein of unknown function DUF2006 gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1124 Acife_1125 Acife_1125 Acife_1125 1142370 1144877 - protein of unknown function DUF214 PFAM: Protein of unknown function DUF214%2C permase predicted~KEGG: afr:AFE_0654 ABC transporter%2C permease protein gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1125 Acife_1126 Acife_1126 Acife_1126 1144874 1145590 - ABC transporter related protein KEGG: afe:Lferr_0805 ABC transporter-like protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1126 Acife_1127 Acife_1127 Acife_1127 1145998 1146324 + thioredoxin KEGG: afr:AFE_0657 thioredoxin~TIGRFAM: Thioredoxin~PFAM: Thioredoxin domain gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1127 Acife_1128 Acife_1128 Acife_1128 1146321 1147697 + transcription termination factor Rho TIGRFAM: Transcription termination factor Rho~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B Rho termination factor%2C RNA-binding%3B Rho termination factor%2C N-terminal~KEGG: afr:AFE_0658 transcription termination factor Rho~SMART: Cold shock protein%3B ATPase%2C AAA+ type%2C core gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1128 Acife_1129 Acife_1129 Acife_1129 1147773 1147976 + 50S ribosomal protein L31 TIGRFAM: Ribosomal protein L31~HAMAP: 50S ribosomal protein L31~KEGG: afr:AFE_0659 ribosomal protein L31~PFAM: Ribosomal protein L31 gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1129 Acife_1130 Acife_1130 Acife_1130 1147983 1149221 + NAD-binding malic protein PFAM: Malic enzyme%2C NAD-binding%3B Malic enzyme%2C N-terminal~KEGG: afr:AFE_0660 malic enzyme family protein gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1130 Acife_1131 Acife_1131 Acife_1131 1149228 1150283 + protein of unknown function UPF0118 PFAM: Uncharacterised protein family UPF0118~KEGG: afr:AFE_0661 hypothetical protein gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1131 Acife_1132 Acife_1132 Acife_1132 1150433 1152109 + Dihydroxy-acid dehydratase TIGRFAM: Dihydroxy-acid dehydratase~HAMAP: Dihydroxy-acid dehydratase~KEGG: afr:AFE_0662 dihydroxy-acid dehydratase~PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1132 Acife_1133 Acife_1133 Acife_1133 1152116 1153075 + protein of unknown function DUF88 PFAM: Protein of unknown function DUF88~KEGG: afr:AFE_0663 hypothetical protein gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1133 Acife_1134 Acife_1134 Acife_1134 1153083 1154396 - amino-acid N-acetyltransferase KEGG: afr:AFE_0664 N-acetylglutamate synthase~TIGRFAM: Amino-acid N-acetyltransferase (ArgA)~PFAM: Aspartate/glutamate/uridylate kinase%3B GCN5-related N-acetyltransferase gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1134 Acife_1135 Acife_1135 Acife_1135 1154407 1154718 - BolA family protein PFAM: BolA-like protein~KEGG: afr:AFE_0665 BolA family protein gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1135 Acife_1136 Acife_1136 Acife_1136 1154715 1155017 - YCII-related protein PFAM: YCII-related~KEGG: afr:AFE_0666 YCII-related domain protein gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1136 Acife_1137 Acife_1137 Acife_1137 1155105 1155662 - intracellular septation protein TIGRFAM: Intracellular septation protein A~HAMAP: Intracellular septation protein A~KEGG: afr:AFE_0667 intracellular septation protein A~PFAM: Intracellular septation protein A gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1137 Acife_1138 Acife_1138 Acife_1138 1155726 1156598 + protein of unknown function DUF815 KEGG: afr:AFE_0668 hypothetical protein~PFAM: Protein of unknown function DUF815~SMART: ATPase%2C AAA+ type%2C core gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1138 Acife_1139 Acife_1139 Acife_1139 1156834 1157100 + AbrB family transcriptional regulator KEGG: tsc:TSC_c24400 AbrB family transcriptional regulator gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1139 Acife_1140 Acife_1140 Acife_1140 1157164 1157457 - addiction module antidote protein TIGRFAM: Addiction module antidote protein%2C HI1420~KEGG: afe:Lferr_0282 putative transcriptional regulator gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1140 Acife_1141 Acife_1141 Acife_1141 1157459 1157623 - hypothetical protein gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1141 Acife_1142 Acife_1142 Acife_1142 1157780 1158094 - DNA polymerase beta domain protein region PFAM: Nucleotidyltransferase~KEGG: glo:Glov_3592 DNA polymerase beta domain protein region gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1142 Acife_1143 Acife_1143 Acife_1143 1158087 1158479 - nucleotidyltransferase substrate binding protein%2C HI0074 family KEGG: glo:Glov_3593 nucleotidyltransferase substrate binding protein%2C HI0074 family~TIGRFAM: Nucleotidyltransferase substrate binding protein%2C HI0074~PFAM: Nucleotidyltransferase substrate binding protein%2C HI0074 gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1143 Acife_1144 Acife_1144 Acife_1144 1158645 1158977 - HicB-related protein KEGG: syp:SYNPCC7002_A1564 HicB-related protein gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1144 Acife_1145 Acife_1145 Acife_1145 1158974 1159081 - pseudogene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1145 Acife_1146 Acife_1146 Acife_1146 1159120 1159203 + pseudogene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1146 Acife_1147 Acife_1147 Acife_1147 1159211 1159468 + hypothetical protein KEGG: lbf:LBF_1159 hypothetical protein gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1147 Acife_1148 Acife_1148 Acife_1148 1159562 1160899 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: npu:Npun_BR216 hypothetical protein gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1148 Acife_1149 Acife_1149 Acife_1149 1160903 1161811 + hypothetical protein KEGG: dat:HRM2_05840 hypothetical protein gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1149 Acife_1150 Acife_1150 Acife_1150 1161864 1162073 + pseudogene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1150 Acife_1151 Acife_1151 Acife_1151 1162087 1162245 + pseudogene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1151 Acife_1152 Acife_1152 Acife_1152 1162285 1162692 - PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: eba:ebD130 virulence associated protein VapC gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1152 Acife_1153 Acife_1153 Acife_1153 1162692 1162922 - SpoVT/AbrB domain-containing protein PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: eba:ebA7217 related to putative virulence-associated proteins and nitrogen regulatory protein NtrP gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1153 Acife_1154 Acife_1154 Acife_1154 1163409 1164650 + AAA family ATPase KEGG: dba:Dbac_2317 AAA family ATPase gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1154 Acife_1155 Acife_1155 Acife_1155 1164672 1166114 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase KEGG: afr:AFE_1366 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase~TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase~PFAM: Mannose-6-phosphate isomerase%2C type II%2C C-terminal%3B Nucleotidyl transferase gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1155 Acife_1156 Acife_1156 Acife_1156 1166134 1166466 - hypothetical protein KEGG: slt:Slit_2475 hypothetical protein gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1156 Acife_1157 Acife_1157 Acife_1157 1166463 1166687 - protein of unknown function DUF433 PFAM: Protein of unknown function DUF433~KEGG: ava:Ava_1741 hypothetical protein gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1157 Acife_1158 Acife_1158 Acife_1158 1166769 1167788 - GDP-mannose 4%2C6-dehydratase KEGG: afr:AFE_3292 GDP-mannose 4%2C6-dehydratase~TIGRFAM: GDP-mannose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1158 Acife_1159 Acife_1159 Acife_1159 1167785 1168669 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1159 Acife_1160 Acife_1160 Acife_1160 1168666 1169091 - hypothetical protein gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1160 Acife_1161 Acife_1161 Acife_1161 1169088 1169321 - hypothetical protein gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1161 Acife_1162 Acife_1162 Acife_1162 1169560 1170339 - hypothetical protein KEGG: afr:AFE_2093 hypothetical protein gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1162 Acife_1163 Acife_1163 Acife_1163 1170429 1171085 - hypothetical protein KEGG: bxe:Bxe_C1199 hypothetical protein gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1163 Acife_1164 Acife_1164 Acife_1164 1171184 1171657 + pseudogene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1164 Acife_1165 Acife_1165 Acife_1165 1171704 1172872 - pseudogene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1165 Acife_1166 Acife_1166 Acife_1166 1173287 1174744 - Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP KEGG: afr:AFE_0073 undecaprenyl-phosphate galactosephosphotransferase~TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP%3B Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase~PFAM: Bacterial sugar transferase gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1166 Acife_1167 Acife_1167 Acife_1167 1174784 1175710 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: afr:AFE_0082 O antigen biosynthesis rhamnosyltransferase%2C putative gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1167 Acife_1168 Acife_1168 Acife_1168 1175776 1176825 - glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: afr:AFE_0081 mannosyltransferase gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1168 Acife_1169 Acife_1169 Acife_1169 1176815 1178155 - hypothetical protein KEGG: btl:BALH_4774 hypothetical protein gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1169 Acife_1170 Acife_1170 Acife_1170 1178360 1179568 - glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: afr:AFE_0079 glycosyltransferase%2C putative gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1170 Acife_1171 Acife_1171 Acife_1171 1179969 1180994 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: met:M446_4968 glycosyl transferase family protein gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1171 Acife_1172 Acife_1172 Acife_1172 1180991 1182544 - polysaccharide biosynthesis protein PFAM: Polysaccharide biosynthesis protein~KEGG: ypb:YPTS_1047 O-unit flippase-like protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1172 Acife_1173 Acife_1173 Acife_1173 1182537 1183442 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: dhd:Dhaf_4183 NAD-dependent epimerase/dehydratase gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1173 Acife_1174 Acife_1174 Acife_1174 1183453 1184001 - dTDP-4-dehydrorhamnose 3%2C5-epimerase KEGG: cth:Cthe_2560 dTDP-4-dehydrorhamnose 3%2C5-epimerase~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase related~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase related gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1174 Acife_1175 Acife_1175 Acife_1175 1184007 1185320 - DegT/DnrJ/EryC1/StrS aminotransferase PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~KEGG: bac:BamMC406_2290 DegT/DnrJ/EryC1/StrS aminotransferase gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1175 Acife_1176 Acife_1176 Acife_1176 1185313 1186395 - CDP-glucose 4%2C6-dehydratase KEGG: gca:Galf_2849 CDP-glucose 4%2C6-dehydratase~TIGRFAM: CDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1176 Acife_1177 Acife_1177 Acife_1177 1186377 1187147 - glucose-1-phosphate cytidylyltransferase KEGG: slt:Slit_2899 glucose-1-phosphate cytidylyltransferase~TIGRFAM: Glucose-1-phosphate cytidylyltransferase~PFAM: Nucleotidyl transferase gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1177 Acife_1178 Acife_1178 Acife_1178 1187317 1188315 - UDP-glucose 4-epimerase KEGG: afr:AFE_1342 UDP-glucose 4-epimerase~TIGRFAM: UDP-glucose 4-epimerase~PFAM: NAD-dependent epimerase/dehydratase gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1178 Acife_1179 Acife_1179 Acife_1179 1188312 1189076 - protein-tyrosine phosphatase%2C putative KEGG: afr:AFE_1341 protein-tyrosine phosphatase%2C putative gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1179 Acife_1180 Acife_1180 Acife_1180 1189067 1191571 - capsular exopolysaccharide family KEGG: afr:AFE_1340 tyrosine-protein kinase%2C putative~TIGRFAM: Exopolysaccharide synthesis protein~PFAM: Lipopolysaccharide biosynthesis gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1180 Acife_1181 Acife_1181 Acife_1181 1191581 1192708 - polysaccharide export protein PFAM: Polysaccharide export protein~KEGG: afr:AFE_1339 polysaccharide biosynthesis/export domain protein gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1181 Acife_1182 Acife_1182 Acife_1182 1192686 1193714 - phosphoesterase PA-phosphatase related protein KEGG: afr:AFE_1338 PAP2 family protein~PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase~SMART: Phosphatidic acid phosphatase type 2/haloperoxidase gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1182 Acife_1183 Acife_1183 Acife_1183 1193724 1193999 - hypothetical protein gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1183 Acife_1184 Acife_1184 Acife_1184 1193962 1194435 - clan AA aspartic protease%2C AF_0612 family TIGRFAM: clan AA aspartic protease%2C AF_0612 family~KEGG: syn:slr0890 hypothetical protein gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1184 Acife_1185 Acife_1185 Acife_1185 1194443 1194550 - pseudogene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1185 Acife_1186 Acife_1186 Acife_1186 1194719 1194886 - hypothetical protein gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1186 Acife_1187 Acife_1187 Acife_1187 1194953 1195291 - transcriptional modulator of MazE/toxin%2C MazF PFAM: PemK-like protein~KEGG: psb:Psyr_0890 toxin ChpB gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1187 Acife_1188 Acife_1188 Acife_1188 1195291 1195545 - SpoVT/AbrB domain-containing protein PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: kva:Kvar_1641 transcriptional regulator/antitoxin%2C MazE gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1188 Acife_1189 Acife_1189 Acife_1189 1195717 1196142 - PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: tmz:Tmz1t_0480 PilT protein domain protein gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1189 Acife_1190 Acife_1190 Acife_1190 1196139 1196384 - prevent-host-death family protein KEGG: tmz:Tmz1t_0479 prevent-host-death family protein gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1190 Acife_1191 Acife_1191 Acife_1191 1196608 1196832 - hypothetical protein KEGG: rrs:RoseRS_3426 hypothetical protein gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1191 Acife_1192 Acife_1192 Acife_1192 1196925 1197059 - hypothetical protein gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1192 Acife_1193 Acife_1193 Acife_1193 1197141 1197476 + hypothetical protein manually curated~KEGG: afe:Lferr_0145 transposase family protein gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1193 Acife_1194 Acife_1194 Acife_1194 1197584 1199038 - Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP KEGG: afr:AFE_1370 undecaprenyl-phosphate galactosephosphotransferase%2C putative~TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase%2C WbaP%3B Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase~PFAM: Bacterial sugar transferase gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1194 Acife_1195 Acife_1195 Acife_1195 1198977 1199123 - hypothetical protein gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1195 Acife_1196 Acife_1196 Acife_1196 1199266 1200259 - pseudogene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1196 Acife_1197 Acife_1197 Acife_1197 1200256 1200363 - hypothetical protein KEGG: avn:Avin_50240 hypothetical protein gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1197 Acife_1198 Acife_1198 Acife_1198 1200422 1200763 - hypothetical protein gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1198 Acife_1199 Acife_1199 Acife_1199 1200763 1200966 - hypothetical protein KEGG: afe:Lferr_1002 hypothetical protein gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1199 Acife_1200 Acife_1200 Acife_1200 1201235 1201501 + DNA-binding CopG-like domain-containing protein PFAM: CopG-like DNA-binding~KEGG: psp:PSPPH_1760 ribbon-helix-helix protein domain-containing protein gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1200 Acife_1201 Acife_1201 Acife_1201 1201611 1202216 - hypothetical protein KEGG: vap:Vapar_4559 hypothetical protein gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1201 Acife_1202 Acife_1202 Acife_1202 1202209 1202409 - hypothetical protein gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1202 Acife_1203 Acife_1203 Acife_1203 1202745 1203959 + transposase IS204/IS1001/IS1096/IS1165 family protein PFAM: Transposase%2C IS204/IS1001/IS1096/IS1165~KEGG: cph:Cpha266_2270 transposase%2C IS204/IS1001/IS1096/IS1165 family protein gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1203 Acife_1204 Acife_1204 Acife_1204 1204361 1204657 + addiction module antitoxin%2C RelB/DinJ family KEGG: ajs:Ajs_2239 addiction module antitoxin~TIGRFAM: RelB antitoxin~PFAM: RelB antitoxin gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1204 Acife_1205 Acife_1205 Acife_1205 1204644 1204880 + plasmid stabilization system PFAM: Plasmid stabilisation system~KEGG: ajs:Ajs_2238 addiction module antitoxin gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1205 Acife_1206 Acife_1206 Acife_1206 1204899 1205165 + hypothetical protein gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1206 Acife_1207 Acife_1207 Acife_1207 1205417 1206043 + hypothetical protein KEGG: afr:AFE_2212 hypothetical protein gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1207 Acife_1208 Acife_1208 Acife_1208 1206058 1207134 - NADH:flavin oxidoreductase/NADH oxidase PFAM: NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal~KEGG: afr:AFE_2211 oxidoreductase%2C FAD/FMN-binding gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1208 Acife_1209 Acife_1209 Acife_1209 1207131 1207859 - dienelactone hydrolase PFAM: Dienelactone hydrolase~KEGG: afr:AFE_2210 carboxymethylenebutenolidase family protein gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1209 Acife_1210 Acife_1210 Acife_1210 1207949 1208566 - regulatory protein TetR PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: afr:AFE_2209 transcriptional regulator%2C TetR family gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1210 Acife_1211 Acife_1211 Acife_1211 1208710 1209952 + pseudogene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1211 Acife_1212 Acife_1212 Acife_1212 1209967 1210794 - nicotinate-nucleotide pyrophosphorylase KEGG: afr:AFE_2206 nicotinate-nucleotide pyrophosphorylase~TIGRFAM: Nicotinate-nucleotide pyrophosphorylase~PFAM: Quinolinate phosphoribosyl transferase gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1212 Acife_1213 Acife_1213 Acife_1213 1210791 1212140 - Na(+)/H(+) antiporter nhaA TIGRFAM: Na+/H+ antiporter NhaA~HAMAP: Na+/H+ antiporter NhaA~KEGG: afe:Lferr_1861 Na+/H+ antiporter NhaA~PFAM: Na+/H+ antiporter NhaA gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1213 Acife_1214 Acife_1214 Acife_1214 1212159 1214975 - Valyl-tRNA synthetase TIGRFAM: Valyl-tRNA synthetase%2C class Ia~HAMAP: Valyl-tRNA synthetase~KEGG: afr:AFE_2204 valyl-tRNA synthetase gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1214 Acife_1215 Acife_1215 Acife_1215 1214987 1215511 - hypothetical protein KEGG: afe:Lferr_1859 hypothetical protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1215 Acife_1216 Acife_1216 Acife_1216 1215526 1215951 - DNA polymerase III chi subunit HolC PFAM: DNA polymerase III chi subunit%2C HolC~KEGG: afr:AFE_2203 DNA polymerase III%2C chi subunit gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1216 Acife_1217 Acife_1217 Acife_1217 1215964 1217466 - cytosol aminopeptidase KEGG: afr:AFE_2201 cytosol aminopeptidase~HAMAP: cytosol aminopeptidase~PFAM: Peptidase M17%2C leucyl aminopeptidase%2C C-terminal%3B Peptidase M17%2C leucyl aminopeptidase%2C N-terminal gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1217 Acife_1218 Acife_1218 Acife_1218 1217599 1218705 + permease YjgP/YjgQ family protein PFAM: Permease YjgP/YjgQ%2C predicted~KEGG: afr:AFE_2200 YjgP/YjgQ family protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1218 Acife_1219 Acife_1219 Acife_1219 1218702 1219775 + permease YjgP/YjgQ family protein PFAM: Permease YjgP/YjgQ%2C predicted~KEGG: afr:AFE_2199 YjgP/YjgQ family protein gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1219 Acife_1220 Acife_1220 Acife_1220 1219768 1220112 - hypothetical protein KEGG: afe:Lferr_1854 hypothetical protein gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1220 Acife_1221 Acife_1221 Acife_1221 1220127 1220819 - glutathione S-transferase domain protein KEGG: tgr:Tgr7_2771 glutathione S-transferase domain protein gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1221 Acife_1222 Acife_1222 Acife_1222 1220828 1221280 - Uncharacterized protein family UPF0310 PFAM: Uncharacterised protein family UPF0310~KEGG: afr:AFE_2196 hypothetical protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1222 Acife_1223 Acife_1223 Acife_1223 1221285 1221599 - iron donor protein CyaY KEGG: afr:AFE_2195 CyaY protein~TIGRFAM: Frataxin-like~PFAM: Frataxin-like gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1223 Acife_1224 Acife_1224 Acife_1224 1221687 1223483 - ATP-dependent DNA helicase RecQ TIGRFAM: DNA helicase%2C ATP-dependent%2C RecQ type%2C bacterial%3B DNA helicase%2C ATP-dependent%2C RecQ type%2C N-terminal~PFAM: RQC domain%3B DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal%3B Helicase/RNase D C-terminal%2C HRDC domain~KEGG: afr:AFE_2194 ATP-dependent DNA helicase RecQ~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal%3B Helicase/RNase D C-terminal%2C HRDC domain gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1224 Acife_1225 Acife_1225 Acife_1225 1223486 1224325 - metallophosphoesterase PFAM: Metallophosphoesterase~KEGG: afr:AFE_2193 diadenosine tetraphosphatase gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1225 Acife_1226 Acife_1226 Acife_1226 1224329 1224676 - hypothetical protein KEGG: afr:AFE_2192 hypothetical protein gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1226 Acife_1227 Acife_1227 Acife_1227 1224969 1225772 + ABC-type transporter%2C integral membrane subunit PFAM: Binding-protein-dependent transport systems inner membrane component~KEGG: afr:AFE_2190 ABC transporter%2C permease protein gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1227 Acife_1228 Acife_1228 Acife_1228 1225791 1226798 + ABC transporter related protein KEGG: afe:Lferr_1847 ABC transporter-like protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1228 Acife_1229 Acife_1229 Acife_1229 1226928 1227218 + 30S ribosomal protein S20 TIGRFAM: Ribosomal protein S20~HAMAP: Ribosomal protein S20~KEGG: afr:AFE_2188 30S ribosomal protein S20~PFAM: Ribosomal protein S20 gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1229 Acife_1230 Acife_1230 Acife_1230 1227319 1229304 - UvrD/REP helicase PFAM: DNA helicase%2C UvrD/REP type~KEGG: afr:AFE_2187 ATP-dependent DNA helicase Rep gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1230 Acife_1231 Acife_1231 Acife_1231 1229328 1230146 - Prolipoprotein diacylglyceryl transferase TIGRFAM: Prolipoprotein diacylglyceryl transferase~HAMAP: Prolipoprotein diacylglyceryl transferase~KEGG: afr:AFE_2186 prolipoprotein diacylglyceryl transferase~PFAM: Prolipoprotein diacylglyceryl transferase gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1231 Acife_1232 Acife_1232 Acife_1232 1230217 1231248 - Porphyromonas-type peptidyl-arginine deiminase PFAM: Peptidyl-arginine deiminase%2C Porphyromonas-type~KEGG: afr:AFE_2176 peptidyl-arginine deiminase gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1232 Acife_1233 Acife_1233 Acife_1233 1231336 1232049 + pseudouridine synthase Rsu TIGRFAM: Pseudouridine synthase%2C RsuA and RluB/E/F~PFAM: RNA-binding S4%3B Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~KEGG: afr:AFE_2175 ribosomal small subunit pseudouridine synthase A~SMART: RNA-binding S4 gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1233 Acife_1234 Acife_1234 Acife_1234 1232046 1232495 + NUDIX hydrolase PFAM: NUDIX hydrolase domain~KEGG: afr:AFE_2174 NUDIX hydrolase gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1234 Acife_1235 Acife_1235 Acife_1235 1232553 1233077 + RNA pyrophosphohydrolase KEGG: afr:AFE_2173 NUDIX hydrolase~HAMAP: RNA pyrophosphohydrolase~PFAM: NUDIX hydrolase domain gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1235 Acife_1236 Acife_1236 Acife_1236 1233053 1234519 - GTP-binding protein KEGG: afr:AFE_2171 GTP-binding protein gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1236 Acife_1237 Acife_1237 Acife_1237 1234486 1235322 - polysaccharide deacetylase PFAM: Polysaccharide deacetylase~KEGG: afe:Lferr_1828 polysaccharide deacetylase gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1237 Acife_1238 Acife_1238 Acife_1238 1235523 1236320 + hypothetical protein KEGG: afr:AFE_2160 hypothetical protein gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1238 Acife_1239 Acife_1239 Acife_1239 1236406 1237317 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: afe:Lferr_1817 LysR family transcriptional regulator gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1239 Acife_1240 Acife_1240 Acife_1240 1237325 1239604 - von Willebrand factor type A KEGG: afr:AFE_2157 von Willebrand factor type A domain protein~PFAM: von Willebrand factor%2C type A~SMART: von Willebrand factor%2C type A gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1240 Acife_1241 Acife_1241 Acife_1241 1239627 1240445 - CbbQ protein KEGG: afr:AFE_2156 CbbQ protein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1241 Acife_1242 Acife_1242 Acife_1242 1240596 1241975 - Ribulose bisphosphate carboxylase KEGG: afr:AFE_2155 ribulose bisphosphate carboxylase~HAMAP: Ribulose bisphosphate carboxylase~PFAM: Ribulose bisphosphate carboxylase%2C large subunit%2C C-terminal%3B Ribulose bisphosphate carboxylase%2C large subunit%2C N-terminal gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1242 Acife_1243 Acife_1243 Acife_1243 1242229 1242726 - NADH ubiquinone oxidoreductase 20 kDa subunit PFAM: NADH:ubiquinone oxidoreductase-like%2C 20kDa subunit~KEGG: afr:AFE_2154 hydrogenase-4%2C I subunit gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1243 Acife_1244 Acife_1244 Acife_1244 1242763 1244313 - NADH-ubiquinone oxidoreductase chain 49kDa PFAM: NADH-quinone oxidoreductase%2C subunit D%3B NADH:ubiquinone oxidoreductase%2C 30kDa subunit~KEGG: afr:AFE_2153 hydrogenase-4%2C G subunit gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1244 Acife_1245 Acife_1245 Acife_1245 1244324 1245778 - NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH:ubiquinone/plastoquinone oxidoreductase~KEGG: afr:AFE_2152 hydrogenase 4 subunit F gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1245 Acife_1246 Acife_1246 Acife_1246 1245778 1246455 - hydrogenase-4%2C E subunit KEGG: afr:AFE_2151 hydrogenase-4%2C E subunit gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1246 Acife_1247 Acife_1247 Acife_1247 1246457 1247398 - hydrogenase-4%2C C subunit KEGG: afr:AFE_2150 hydrogenase-4%2C C subunit gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1247 Acife_1248 Acife_1248 Acife_1248 1247395 1249377 - NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH:ubiquinone/plastoquinone oxidoreductase~KEGG: afr:AFE_2149 hydrogenase 4 subunit B gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1248 Acife_1249 Acife_1249 Acife_1249 1249374 1249919 - helix-turn-helix domain protein KEGG: afr:AFE_2148 DNA-binding protein%2C putative~PFAM: Helix-turn-helix type 3%3B Cupin 2%2C conserved barrel~SMART: Helix-turn-helix type 3 gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1249 Acife_1250 Acife_1250 Acife_1250 1249977 1251068 - GTP-binding protein YchF KEGG: afr:AFE_2147 GTP-binding protein YchF~TIGRFAM: Conserved hypothetical protein CHP00092~PFAM: Protein of unknown function DUF933%3B GTP-binding protein%2C HSR1-related gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1250 Acife_1251 Acife_1251 Acife_1251 1251078 1251647 - Peptidyl-tRNA hydrolase TIGRFAM: Peptidyl-tRNA hydrolase~HAMAP: Peptidyl-tRNA hydrolase~KEGG: afr:AFE_2146 peptidyl-tRNA hydrolase~PFAM: Peptidyl-tRNA hydrolase gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1251 Acife_1252 Acife_1252 Acife_1252 1251654 1252262 - 50S ribosomal protein L25 TIGRFAM: Ribosomal protein L25~HAMAP: 50S ribosomal protein L25%3B Ribosomal protein L25~KEGG: afr:AFE_2145 ribosomal protein L25~PFAM: Ribosomal protein L25%2C N-terminal gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1252 Acife_1253 Acife_1253 Acife_1253 1252275 1254188 - penicillin-binding protein 2 KEGG: afr:AFE_2144 penicillin-binding protein 2%2C putative~TIGRFAM: Penicillin-binding protein 2~PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1253 Acife_1254 Acife_1254 Acife_1254 1254255 1254515 + hypothetical protein KEGG: afr:AFE_2143 hypothetical protein gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1254 Acife_1255 Acife_1255 Acife_1255 1254537 1254851 + protein of unknown function DUF710 PFAM: Cell division protein ZapA-like~KEGG: afr:AFE_2142 hypothetical protein gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1255 Acife_1256 Acife_1256 Acife_1256 1255095 1255658 + 5-formyltetrahydrofolate cyclo-ligase KEGG: afr:AFE_2140 5-formyltetrahydrofolate cyclo-ligase family protein~TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase~PFAM: 5-formyltetrahydrofolate cyclo-ligase gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1256 Acife_1257 Acife_1257 Acife_1257 1255683 1255814 + pseudogene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1257 Acife_1258 Acife_1258 Acife_1258 1255831 1257606 - peptidase M61 domain protein PFAM: Peptidase M61~KEGG: afr:AFE_2138 PDZ domain protein gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1258 Acife_1259 Acife_1259 Acife_1259 1257617 1257916 - hypothetical protein KEGG: afr:AFE_2137 hydrolase%2C isochorismatase family gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1259 Acife_1260 Acife_1260 Acife_1260 1257923 1258576 - protein-L-isoaspartate(D-aspartate) O-methyltransferase PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase~KEGG: afr:AFE_2136 protein-L-isoaspartate O-methyltransferase gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1260 Acife_1261 Acife_1261 Acife_1261 1258727 1259665 + Mammalian cell entry related domain protein PFAM: Mammalian cell entry related~KEGG: afr:AFE_2135 mce-related protein gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1261 Acife_1262 Acife_1262 Acife_1262 1259670 1260335 + protein of unknown function DUF330 PFAM: Protein of unknown function DUF330~KEGG: afr:AFE_2134 lipoprotein%2C putative gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1262 Acife_1263 Acife_1263 Acife_1263 1260345 1260821 - UspA domain-containing protein PFAM: UspA~KEGG: afr:AFE_2133 universal stress family protein gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1263 Acife_1264 Acife_1264 Acife_1264 1260814 1262526 - Prolyl-tRNA synthetase TIGRFAM: Prolyl-tRNA synthetase%2C class IIa%2C bacterial~HAMAP: Prolyl-tRNA synthetase~KEGG: afr:AFE_2132 prolyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region%3B YbaK/aminoacyl-tRNA synthetase associated region%3B Anticodon-binding gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1264 Acife_1265 Acife_1265 Acife_1265 1262645 1262980 + hypothetical protein gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1265 Acife_1266 Acife_1266 Acife_1266 1263095 1264297 - acyltransferase 3 PFAM: Acyltransferase 3~KEGG: dmr:Deima_1375 acyltransferase 3 gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1266 Acife_1267 Acife_1267 Acife_1267 1264895 1265344 + Protein-export protein secB TIGRFAM: Bacterial protein export chaperone SecB~HAMAP: Bacterial protein export chaperone SecB~KEGG: afr:AFE_2127 preprotein translocase%2C SecB subunit~PFAM: Bacterial protein export chaperone SecB gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1267 Acife_1268 Acife_1268 Acife_1268 1265348 1266376 + Glycerol-3-phosphate dehydrogenase (NAD(P)+) KEGG: afr:AFE_2126 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase~HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]~PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase%2C C-terminal%3B NAD-dependent glycerol-3-phosphate dehydrogenase%2C N-terminal gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1268 Acife_1269 Acife_1269 Acife_1269 1266518 1267561 + Squalene/phytoene synthase PFAM: Squalene/phytoene synthase~KEGG: afr:AFE_2125 phytoene/squalene synthetase family protein gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1269 Acife_1270 Acife_1270 Acife_1270 1267558 1269489 + squalene-hopene cyclase KEGG: afr:AFE_2124 squalene-hopene cyclase~TIGRFAM: Hopene cyclase%3B Squalene cyclase~PFAM: Prenyltransferase/squalene oxidase gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1270 Acife_1271 Acife_1271 Acife_1271 1269471 1270178 + hopanoid-associated phosphorylase KEGG: afr:AFE_2123 MTA/SAH nucleosidase%2C putative~TIGRFAM: Hopanoid-associated phosphorylase HpnG~PFAM: Nucleoside phosphorylase gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1271 Acife_1272 Acife_1272 Acife_1272 1270175 1271164 + hopanoid-associated sugar epimerase KEGG: afr:AFE_2122 hypothetical protein~TIGRFAM: Hopanoid-associated sugar epimerase~PFAM: NAD-dependent epimerase/dehydratase gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1272 Acife_1273 Acife_1273 Acife_1273 1271225 1272361 + hopanoid biosynthesis associated glycosyl transferase protein HpnI KEGG: afr:AFE_2121 glycosyl transferase%2C group 2 family protein~TIGRFAM: Glycosyl transferase%2C family 2%2C hopene-associated%2C HpnI~PFAM: Glycosyl transferase%2C family 2 gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1273 Acife_1274 Acife_1274 Acife_1274 1272361 1273791 + hopanoid biosynthesis associated radical SAM protein HpnJ TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnJ~PFAM: Radical SAM~KEGG: afr:AFE_2120 radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1274 Acife_1275 Acife_1275 Acife_1275 1273793 1274668 + hopanoid biosynthesis associated protein HpnK KEGG: afr:AFE_2119 hypothetical protein~TIGRFAM: Hopanoid biosynthesis associated protein HpnK~PFAM: YdjC-like protein gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1275 Acife_1276 Acife_1276 Acife_1276 1274649 1277351 + hopanoid biosynthesis associated RND transporter like protein HpnN TIGRFAM: Hopanoid biosynthesis associated RND transporter like protein HpnN~KEGG: afe:Lferr_1777 hopanoid biosynthesis associated RND transporter-like protein HpnN gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1276 Acife_1277 Acife_1277 Acife_1277 1277338 1278375 + membrane protein TIGRFAM: membrane protein%3B Lysylphosphatidylglycerol synthetase/UPF0104~KEGG: afe:Lferr_1776 membrane protein gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1277 Acife_1278 Acife_1278 Acife_1278 1278526 1279629 + hopanoid biosynthesis associated radical SAM protein HpnH KEGG: afr:AFE_2115 radical SAM domain protein~TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH~PFAM: Radical SAM gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1278 Acife_1279 Acife_1279 Acife_1279 1279677 1280345 + hopanoid biosynthesis associated membrane protein HpnM KEGG: afr:AFE_2114 hypothetical protein~TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM~PFAM: Toluene tolerance gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1279 Acife_1280 Acife_1280 Acife_1280 1280342 1281148 + VacJ family lipoprotein PFAM: VacJ-like lipoprotein~KEGG: afe:Lferr_1772 VacJ family lipoprotein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1280 Acife_1281 Acife_1281 Acife_1281 1281151 1281438 + Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C TIGRFAM: Glu-tRNAGln amidotransferase%2C C subunit~HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C~KEGG: afr:AFE_2112 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase%2C C subunit~PFAM: Glu-tRNAGln amidotransferase%2C C subunit gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1281 Acife_1282 Acife_1282 Acife_1282 1281448 1282920 + Glutamyl-tRNA(Gln) amidotransferase subunit A TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit~HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit~KEGG: afr:AFE_2111 aspartyl/glutamyl-tRNA amidotransferase subunit A~PFAM: Amidase gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1282 Acife_1283 Acife_1283 Acife_1283 1282923 1284353 + Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B PFAM: Glutamyl-tRNA(Gln) amidotransferase%2C subunit B/E%2C N-terminal%3B Glutamyl-tRNA(Gln) amidotransferase%2C subunit B/E%2C central region%3B Asn/Gln amidotransferase~manually curated~TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase%2C B subunit~KEGG: afr:AFE_2110 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase%2C B subunit~HAMAP: Glutamyl-tRNA(Gln) amidotransferase%2C B subunit gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1283 Acife_1284 Acife_1284 Acife_1284 1284427 1284975 - hypothetical protein KEGG: afe:Lferr_1768 hypothetical protein gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1284 Acife_1285 Acife_1285 Acife_1285 1285937 1287196 + DEAD/DEAH box helicase domain protein KEGG: afr:AFE_1433 ATP-dependent RNA helicase RhlE~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1285 Acife_1286 Acife_1286 Acife_1286 1287316 1288026 + two component transcriptional regulator PhoB%2C winged helix family TIGRFAM: Signal transduction response regulator%2C phosphate regulon transcriptional regulatory protein phoB~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~KEGG: afr:AFE_1434 DNA-binding response regulator PhoB~SMART: Signal transduction response regulator%2C receiver region gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1286 Acife_1287 Acife_1287 Acife_1287 1288007 1289437 + multi-sensor signal transduction histidine kinase TIGRFAM: Signal transduction histidine kinase%2C phosphate regulon sensor PhoR~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B PAS fold~KEGG: afr:AFE_1435 phosphate regulon sensor protein PhoR~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1287 Acife_1288 Acife_1288 Acife_1288 1289522 1290526 + phosphate ABC transporter%2C periplasmic phosphate-binding protein KEGG: afr:AFE_1436 phosphate ABC transporter%2C periplasmic phosphate-binding protein~TIGRFAM: Periplasmic phosphate binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1 gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1288 Acife_1289 Acife_1289 Acife_1289 1290535 1291557 + phosphate ABC transporter%2C inner membrane subunit PstC KEGG: afe:Lferr_1154 phosphate ABC transporter inner membrane subunit PstC~TIGRFAM: Phosphate ABC transporter%2C permease protein PstC~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1289 Acife_1290 Acife_1290 Acife_1290 1291554 1292408 + phosphate ABC transporter%2C inner membrane subunit PstA KEGG: afr:AFE_1438 phosphate ABC transporter%2C permease protein PstA~TIGRFAM: Phosphate transport system permease protein 2~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1290 Acife_1291 Acife_1291 Acife_1291 1292408 1293175 + phosphate ABC transporter%2C ATPase subunit TIGRFAM: Phosphate transport system permease protein 1~PFAM: ABC transporter-like~KEGG: afr:AFE_1439 phosphate ABC transporter%2C ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1291 Acife_1292 Acife_1292 Acife_1292 1293187 1293900 + phosphate uptake regulator%2C PhoU KEGG: afr:AFE_1440 phosphate transport system protein PhoU~TIGRFAM: PhoU~PFAM: PhoU gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1292 Acife_1293 Acife_1293 Acife_1293 1293903 1295414 + Ppx/GppA phosphatase PFAM: Ppx/GppA phosphatase~KEGG: afr:AFE_1441 exopolyphosphatase gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1293 Acife_1294 Acife_1294 Acife_1294 1295458 1296594 + glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: afe:Lferr_1142 group 1 glycosyl transferase gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1294 Acife_1295 Acife_1295 Acife_1295 1296691 1297290 + SNARE associated protein PFAM: SNARE associated Golgi protein~KEGG: afr:AFE_1443 membrane protein%2C DedA family gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1295 Acife_1296 Acife_1296 Acife_1296 1297498 1298250 + ribosomal protein S2 KEGG: afr:AFE_1444 ribosomal protein S2~TIGRFAM: Ribosomal protein S2%2C bacteria/mitochondria/plastid~PFAM: Ribosomal protein S2 gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1296 Acife_1297 Acife_1297 Acife_1297 1298278 1299156 + Elongation factor Ts TIGRFAM: Translation elongation factor EFTs/EF1B~HAMAP: Elongation factor Ts~KEGG: afr:AFE_1445 elongation factor Ts~PFAM: Translation elongation factor EFTs/EF1B%2C dimerisation%3B Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1297 Acife_1298 Acife_1298 Acife_1298 1299157 1299882 + uridylate kinase KEGG: afr:AFE_1446 uridylate kinase~TIGRFAM: Uridylate kinase%2C bacteria~PFAM: Aspartate/glutamate/uridylate kinase gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1298 Acife_1299 Acife_1299 Acife_1299 1299879 1300439 + Ribosome-recycling factor TIGRFAM: Ribosome recycling factor~HAMAP: Ribosome recycling factor%2C bacterial-like~KEGG: afr:AFE_1447 ribosome recycling factor~PFAM: Ribosome recycling factor gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1299 Acife_1300 Acife_1300 Acife_1300 1300443 1301204 + Undecaprenyl pyrophosphate synthase TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like~HAMAP: Undecaprenyl pyrophosphate synthase~KEGG: afe:Lferr_1164 undecaprenyl diphosphate synthase~PFAM: Di-trans-poly-cis-decaprenylcistransferase-like gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1300 Acife_1301 Acife_1301 Acife_1301 1301186 1301998 + phosphatidate cytidylyltransferase PFAM: Phosphatidate cytidylyltransferase~KEGG: afr:AFE_1449 phosphatidate cytidylyltransferase gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1301 Acife_1302 Acife_1302 Acife_1302 1301995 1303170 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~KEGG: afr:AFE_1450 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C N-terminal%3B 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C C-terminal gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1302 Acife_1303 Acife_1303 Acife_1303 1303186 1304544 + membrane-associated zinc metalloprotease TIGRFAM: Peptidase M50%2C putative membrane-associated zinc metallopeptidase~PFAM: Peptidase M50~KEGG: afr:AFE_1451 membrane-associated zinc metalloprotease%2C putative~SMART: PDZ/DHR/GLGF gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1303 Acife_1304 Acife_1304 Acife_1304 1304541 1306886 + outer membrane protein assembly complex%2C YaeT protein KEGG: afr:AFE_1452 outer membrane protein%2C OMP85 family~TIGRFAM: Outer membrane assembly protein%2C YaeT~PFAM: Bacterial surface antigen (D15)%3B Surface antigen variable number gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1304 Acife_1305 Acife_1305 Acife_1305 1306904 1307440 + outer membrane chaperone Skp (OmpH) PFAM: Outer membrane chaperone Skp (OmpH)~KEGG: afr:AFE_1453 outer membrane protein%2C OmpH family gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1305 Acife_1306 Acife_1306 Acife_1306 1307442 1308503 + UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase~HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase~KEGG: afr:AFE_1454 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase~PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase%2C non-repeat region%3B Bacterial transferase hexapeptide repeat gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1306 Acife_1307 Acife_1307 Acife_1307 1308496 1308942 + (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ~HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase~KEGG: afr:AFE_1455 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ~PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase%2C FabA/FabZ gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1307 Acife_1308 Acife_1308 Acife_1308 1308939 1309721 + Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase~HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase~KEGG: afr:AFE_1456 acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine acyltransferase~PFAM: Bacterial transferase hexapeptide repeat gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1308 Acife_1309 Acife_1309 Acife_1309 1309718 1310659 + oxidoreductase domain protein PFAM: Oxidoreductase%2C N-terminal%3B Oxidoreductase%2C C-terminal~KEGG: afr:AFE_1457 oxidoreductase%2C NAD-binding gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1309 Acife_1310 Acife_1310 Acife_1310 1310705 1311814 + DegT/DnrJ/EryC1/StrS aminotransferase PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~KEGG: afr:AFE_1458 pleiotropic regulatory protein%2C putative gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1310 Acife_1311 Acife_1311 Acife_1311 1311819 1312946 + lipid-A-disaccharide synthase KEGG: afr:AFE_1459 lipid A disaccharide synthase LpxB~TIGRFAM: Glycosyl transferase%2C family 19~PFAM: Glycosyl transferase%2C family 19 gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1311 Acife_1312 Acife_1312 Acife_1312 1312960 1313553 + ribonuclease HII/HIII PFAM: Ribonuclease HII/HIII~KEGG: afr:AFE_1460 ribonuclease HII gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1312 Acife_1313 Acife_1313 Acife_1313 1313550 1317050 + DNA polymerase III%2C alpha subunit TIGRFAM: DNA polymerase III%2C alpha subunit~PFAM: Bacterial DNA polymerase III%2C alpha subunit%3B PHP%2C C-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type~KEGG: afr:AFE_1461 DNA polymerase III%2C alpha subunit~SMART: Polymerase/histidinol phosphatase%2C N-terminal gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1313 Acife_1314 Acife_1314 Acife_1314 1317085 1318035 + Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha TIGRFAM: Acetyl-CoA carboxylase%2C alpha subunit~HAMAP: Acetyl-CoA carboxylase%2C alpha subunit~KEGG: afr:AFE_1462 acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit~PFAM: Acetyl-CoA carboxylase%2C alpha subunit%2C conserved region gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1314 Acife_1315 Acife_1315 Acife_1315 1318013 1319407 + tRNA(Ile)-lysidine synthase TIGRFAM: Lysidine-tRNA(Ile) synthetase%2C N-terminal%3B Lysidine-tRNA(Ile) synthetase%2C C-terminal~HAMAP: tRNA(Ile)-lysidine synthase~KEGG: afr:AFE_1464 tRNA(Ile)-lysidine synthetase~PFAM: PP-loop%3B Lysidine-tRNA(Ile) synthetase%2C substrate-binding domain gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1315 Acife_1316 Acife_1316 Acife_1316 1319371 1320702 - dihydroorotase%2C multifunctional complex type KEGG: afr:AFE_1463 dihydroorotase~TIGRFAM: Dihydroorotase multifunctional complex type~PFAM: Amidohydrolase 1 gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1316 Acife_1317 Acife_1317 Acife_1317 1320707 1321171 - transcriptional regulator%2C TraR/DksA family TIGRFAM: RNA polymerase-binding%2C DksA~KEGG: afr:AFE_1465 DnaK suppressor protein gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1317 Acife_1318 Acife_1318 Acife_1318 1321341 1322105 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: afr:AFE_1466 HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3~PFAM: Haloacid dehalogenase-like hydrolase gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1318 Acife_1319 Acife_1319 Acife_1319 1322227 1323468 - glycoside hydrolase family 8 PFAM: Glycoside hydrolase%2C family 8~KEGG: aca:ACP_0076 endo-1%2C4-D-glucanase gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1319 Acife_1320 Acife_1320 Acife_1320 1323498 1324163 - hypothetical protein KEGG: pao:Pat9b_0116 cellulose synthase operon C domain-containing protein gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1320 Acife_1321 Acife_1321 Acife_1321 1324190 1326343 - hypothetical protein KEGG: met:M446_0104 hypothetical protein gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1321 Acife_1322 Acife_1322 Acife_1322 1326340 1328427 - Cellulose synthase BcsB PFAM: Cellulose synthase BcsB%2C bacterial~KEGG: cse:Cseg_3479 cellulose synthase catalytic subunit gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1322 Acife_1323 Acife_1323 Acife_1323 1328454 1330739 - cellulose synthase catalytic subunit (UDP-forming) KEGG: amc:MADE_00787 cellulose synthase catalytic subunit~TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming)~PFAM: Glycosyl transferase%2C family 2%3B Type IV pilus assembly PilZ gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1323 Acife_1324 Acife_1324 Acife_1324 1330781 1331758 - UTP-glucose-1-phosphate uridylyltransferase KEGG: afr:AFE_0445 UTP-glucose-1-phosphate uridylyltransferase~TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase%2C bacterial/archaeal type~PFAM: Nucleotidyl transferase gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1324 Acife_1325 Acife_1325 Acife_1325 1332494 1332841 + hypothetical protein KEGG: afr:AFE_1834 hypothetical protein gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1325 Acife_1326 Acife_1326 Acife_1326 1333104 1333514 + hypothetical protein KEGG: har:HEAR0295 hypothetical protein gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1326 Acife_1327 Acife_1327 Acife_1327 1333504 1335000 + putative circadian clock protein%2C KaiC PFAM: Circadian clock protein KaiC%2C central region%3B KaiA binding~KEGG: har:HEAR0296 protein kinase gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1327 Acife_1328 Acife_1328 Acife_1328 1334987 1336696 + diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~KEGG: geb:GM18_2096 diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1328 Acife_1329 Acife_1329 Acife_1329 1336987 1337601 + Di-trans-poly-cis-decaprenylcistransferase PFAM: Di-trans-poly-cis-decaprenylcistransferase-like~KEGG: Di-trans-poly-cis-decaprenylcistransferase gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1329 Acife_1330 Acife_1330 Acife_1330 1337751 1339217 - putative circadian clock protein%2C KaiC KEGG: har:HEAR0296 protein kinase gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1330 Acife_1331 Acife_1331 Acife_1331 1339220 1339615 - hypothetical protein manually curated~KEGG: har:HEAR0295 hypothetical protein gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1331 Acife_1332 Acife_1332 Acife_1332 1339732 1340454 - putative transcriptional regulator%2C Crp/Fnr family KEGG: mep:MPQ_2599 transcriptional regulator%2C crp/fnr family~PFAM: HTH transcriptional regulator%2C Crp~SMART: HTH transcriptional regulator%2C Crp gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1332 Acife_1333 Acife_1333 Acife_1333 1341065 1345618 + outer membrane autotransporter barrel domain protein KEGG: smt:Smal_0854 outer membrane autotransporter barrel domain-containing protein~TIGRFAM: Outer membrane autotransporter barrel%3B Autotransporter-associated beta strand repeat~PFAM: Autotransporter beta-domain gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1333 Acife_1334 Acife_1334 Acife_1334 1345699 1345998 - regulatory protein ArsR SMART: HTH transcriptional regulator%2C ArsR~KEGG: afr:AFE_2026 transcriptional regulator%2C ArsR family gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1334 Acife_1335 Acife_1335 Acife_1335 1346179 1346319 + hypothetical protein gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1335 Acife_1336 Acife_1336 Acife_1336 1346533 1347267 + putative transcriptional regulator%2C Crp/Fnr family KEGG: pna:Pnap_1316 cyclic nucleotide-binding domain-containing protein gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1336 Acife_1337 Acife_1337 Acife_1337 1347292 1349235 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B Signal transduction response regulator%2C receiver region~KEGG: geb:GM18_2096 diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B Signal transduction response regulator%2C receiver region gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1337 Acife_1338 Acife_1338 Acife_1338 1349238 1351334 - PAS/PAC sensor hybrid histidine kinase TIGRFAM: PAS~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B PAS fold%3B Signal transduction response regulator%2C receiver region~KEGG: sfr:Sfri_1019 PAS/PAC sensor hybrid histidine kinase~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B PAC motif%3B PAS%3B Signal transduction response regulator%2C receiver region gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1338 Acife_1339 Acife_1339 Acife_1339 1351368 1351498 - pseudogene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1339 Acife_1340 Acife_1340 Acife_1340 1351672 1352313 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: afr:AFE_0759 methyltransferase%2C putative gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1340 Acife_1341 Acife_1341 Acife_1341 1352314 1352465 - pseudogene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1341 Acife_1342 Acife_1342 Acife_1342 1352532 1353509 + cation diffusion facilitator family transporter KEGG: afr:AFE_2420 cation diffusion facilitator family transporter~TIGRFAM: Cation efflux protein~PFAM: Cation efflux protein gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1342 Acife_1343 Acife_1343 Acife_1343 1353686 1354426 + beta-lactamase domain protein KEGG: tkm:TK90_0757 beta-lactamase domain protein gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1343 Acife_1344 Acife_1344 Acife_1344 1354423 1354779 + regulatory protein ArsR KEGG: afe:Lferr_2267 ArsR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1344 Acife_1345 Acife_1345 Acife_1345 1354776 1356047 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_2642 hypothetical protein gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1345 Acife_1346 Acife_1346 Acife_1346 1356086 1356310 - pseudogene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1346 Acife_1347 Acife_1347 Acife_1347 1356337 1356600 - lipoprotein%2C putative manually curated~KEGG: afr:AFE_2811 lipoprotein%2C putative gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1347 Acife_1348 Acife_1348 Acife_1348 1356654 1357322 - hopanoid biosynthesis associated membrane protein HpnM KEGG: afr:AFE_2114 hypothetical protein~TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM~PFAM: Toluene tolerance gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1348 Acife_1349 Acife_1349 Acife_1349 1357359 1357520 - UPF0391 membrane protein ytjA KEGG: hch:HCH_04387 hypothetical protein~HAMAP: Protein of unknown function DUF1328~PFAM: Protein of unknown function DUF1328 gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1349 Acife_1350 Acife_1350 Acife_1350 1357587 1357757 - CsbD family protein PFAM: CsbD-like~KEGG: mms:mma_1042 hypothetical protein gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1350 Acife_1351 Acife_1351 Acife_1351 1357772 1358068 - pseudogene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1351 Acife_1352 Acife_1352 Acife_1352 1358068 1358298 - hypothetical protein gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1352 Acife_1353 Acife_1353 Acife_1353 1358343 1358603 - hypothetical protein gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1353 Acife_1354 Acife_1354 Acife_1354 1359284 1359535 + hypothetical protein KEGG: nit:NAL212_1800 transposase mutator type gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1354 Acife_1355 Acife_1355 Acife_1355 1359791 1361818 + UvrABC system protein B SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~TIGRFAM: Excinuclease ABC%2C B subunit~KEGG: afr:AFE_0845 excinuclease ABC%2C B subunit~HAMAP: Excinuclease ABC%2C B subunit~PFAM: DNA/RNA helicase%2C C-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B UvrB/UvrC protein gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1355 Acife_1356 Acife_1356 Acife_1356 1361926 1362975 + Alcohol dehydrogenase GroES domain protein PFAM: Alcohol dehydrogenase GroES-like%3B Alcohol dehydrogenase%2C zinc-binding~KEGG: afr:AFE_0846 alcohol dehydrogenase%2C zinc-containing gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1356 Acife_1357 Acife_1357 Acife_1357 1363194 1364834 + CTP synthase TIGRFAM: CTP synthase~HAMAP: CTP synthase~KEGG: afr:AFE_0847 CTP synthetase~PFAM: CTP synthase%2C N-terminal%3B Glutamine amidotransferase class-I%2C C-terminal gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1357 Acife_1358 Acife_1358 Acife_1358 1364831 1365676 + 2-dehydro-3-deoxyphosphooctonate aldolase TIGRFAM: 3-deoxy-8-phosphooctulonate synthase~HAMAP: 3-deoxy-8-phosphooctulonate synthase~KEGG: afr:AFE_0848 2-dehydro-3-deoxyphosphooctonate aldolase~PFAM: DAHP synthetase I/KDSA gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1358 Acife_1359 Acife_1359 Acife_1359 1365673 1366953 + Enolase TIGRFAM: Enolase~HAMAP: Enolase~KEGG: afr:AFE_0849 phosphopyruvate hydratase~PFAM: Enolase%2C C-terminal%3B Enolase%2C N-terminal gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1359 Acife_1360 Acife_1360 Acife_1360 1367008 1367373 + Septum formation initiator PFAM: Septum formation initiator~KEGG: afr:AFE_0850 septum formation initiator family protein gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1360 Acife_1361 Acife_1361 Acife_1361 1367423 1367983 - Elongation factor P TIGRFAM: Translation elongation factor P~HAMAP: Translation elongation factor P~KEGG: afr:AFE_0851 translation elongation factor P~PFAM: Elongation factor P%2C C-terminal%3B Translation elongation factor P/YeiP%2C central%3B Translation elongation factor%2C KOW-like gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1361 Acife_1362 Acife_1362 Acife_1362 1368073 1368375 + protein of unknown function DUF971 PFAM: Protein of unknown function DUF971~KEGG: afr:AFE_0852 hypothetical protein gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1362 Acife_1363 Acife_1363 Acife_1363 1368408 1370279 + UvrABC system protein C SMART: Excinuclease ABC%2C C subunit%2C N-terminal~TIGRFAM: Excinuclease ABC%2C C subunit~KEGG: afe:Lferr_0979 excinuclease ABC subunit C~HAMAP: UvrABC system protein C~PFAM: Excinuclease ABC%2C C subunit%2C C-terminal%3B Excinuclease ABC%2C C subunit%2C N-terminal%3B UvrB/UvrC protein gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1363 Acife_1364 Acife_1364 Acife_1364 1370282 1370869 + CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase KEGG: afr:AFE_0854 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1364 Acife_1365 Acife_1365 Acife_1365 1371168 1371323 + hypothetical protein gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1365 Acife_1366 Acife_1366 Acife_1366 1371311 1372288 + dihydrouridine synthase DuS PFAM: tRNA-dihydrouridine synthase~KEGG: afr:AFE_2027 tRNA-dihydrouridine synthase A gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1366 Acife_1367 Acife_1367 Acife_1367 1372292 1372585 - regulatory protein ArsR KEGG: afr:AFE_2026 transcriptional regulator%2C ArsR family~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1367 Acife_1368 Acife_1368 Acife_1368 1372855 1374318 - glucose-6-phosphate 1-dehydrogenase KEGG: afr:AFE_2025 glucose-6-phosphate 1-dehydrogenase~TIGRFAM: Glucose-6-phosphate dehydrogenase~PFAM: Glucose-6-phosphate dehydrogenase gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1368 Acife_1369 Acife_1369 Acife_1369 1374319 1375239 - 6-phosphogluconate dehydrogenase%2C decarboxylating KEGG: afr:AFE_2024 6-phosphogluconate dehydrogenase-like protein~TIGRFAM: 6-phosphogluconate dehydrogenase related protein~PFAM: 6-phosphogluconate dehydrogenase%2C NAD-binding%3B 6-phosphogluconate dehydrogenase%2C C-terminal gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1369 Acife_1370 Acife_1370 Acife_1370 1375367 1376548 + Phosphoribosylglycinamide formyltransferase 2 TIGRFAM: Phosphoribosylglycinamide formyltransferase 2~HAMAP: Phosphoribosylglycinamide formyltransferase 2~KEGG: afr:AFE_2023 phosphoribosylglycinamide formyltransferase 2~PFAM: ATP-grasp fold%2C ATP-dependent carboxylate-amine ligase-type gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1370 Acife_1371 Acife_1371 Acife_1371 1376594 1377832 - aminotransferase class I and II PFAM: Aminotransferase%2C class I/II~KEGG: afr:AFE_2022 aspartate aminotransferase gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1371 Acife_1372 Acife_1372 Acife_1372 1378181 1380022 + ABC transporter related protein KEGG: pla:Plav_2096 lipid ABC transporter ATPase/inner membrane protein~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~SMART: ATPase%2C AAA+ type%2C core gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1372 Acife_1373 Acife_1373 Acife_1373 1380147 1380527 + hypothetical protein KEGG: afe:Lferr_1685 hypothetical protein gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1373 Acife_1374 Acife_1374 Acife_1374 1380543 1381520 + protein of unknown function DUF74 PFAM: Uncharacterised protein family UPF0145~KEGG: afr:AFE_2019 hypothetical protein gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1374 Acife_1375 Acife_1375 Acife_1375 1381517 1382341 + protein of unknown function DUF74 PFAM: Uncharacterised protein family UPF0145~KEGG: afr:AFE_2018 hypothetical protein gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1375 Acife_1376 Acife_1376 Acife_1376 1382381 1383115 + phage shock protein A%2C PspA PFAM: PspA/IM30~KEGG: afr:AFE_2017 PspA/IM30 family gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1376 Acife_1377 Acife_1377 Acife_1377 1383378 1383950 + protein of unknown function DUF1643 PFAM: Protein of unknown function DUF1643~KEGG: mae:Maeo_0922 hypothetical protein gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1377 Acife_1378 Acife_1378 Acife_1378 1383963 1384775 - protein of unknown function DUF202 PFAM: Protein of unknown function DUF202~KEGG: afr:AFE_1554 hypothetical protein gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1378 Acife_1379 Acife_1379 Acife_1379 1385525 1386868 + hypothetical protein KEGG: afe:Lferr_0031 hypothetical protein gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1379 Acife_1380 Acife_1380 Acife_1380 1386919 1387416 + hypothetical protein KEGG: amv:ACMV_33690 hypothetical protein gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1380 Acife_1381 Acife_1381 Acife_1381 1387503 1388021 + hypothetical protein KEGG: tdn:Suden_1309 hypothetical protein gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1381 Acife_1382 Acife_1382 Acife_1382 1388128 1388285 + pseudogene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1382 Acife_1383 Acife_1383 Acife_1383 1388329 1389342 + periplasmic solute-binding protein%2C putative KEGG: afr:AFE_0043 periplasmic solute-binding protein%2C putative gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1383 Acife_1384 Acife_1384 Acife_1384 1389353 1390441 + TQO small subunit DoxD domain-containing protein PFAM: TQO small subunit DoxD~KEGG: afe:Lferr_0045 TQO small subunit DoxD gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1384 Acife_1385 Acife_1385 Acife_1385 1390677 1391900 - Protein of unknown function methylase putative PFAM: Protein of unknown function methylase putative~KEGG: afe:Lferr_1014 methyltransferase small gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1385 Acife_1386 Acife_1386 Acife_1386 1392062 1393114 + Methylthioribose-1-phosphate isomerase TIGRFAM: Putative translation initiation factor%2C aIF-2BI/5-methylthioribose-1-phosphate isomerase%3B Initiation factor 2B alpha/beta/delta~HAMAP: Methylthioribose-1-phosphate isomerase~KEGG: afr:AFE_0893 translation initiation factor%2C putative%2C aIF-2BI family~PFAM: Initiation factor 2B related gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1386 Acife_1387 Acife_1387 Acife_1387 1393171 1395708 + DNA gyrase%2C A subunit TIGRFAM: DNA gyrase%2C subunit A~PFAM: DNA topoisomerase%2C type IIA%2C subunit A or C-terminal%3B DNA gyrase/topoisomerase IV%2C subunit A%2C C-terminal beta-pinwheel~KEGG: afr:AFE_0894 DNA gyrase%2C A subunit~SMART: DNA topoisomerase%2C type IIA%2C subunit A or C-terminal gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1387 Acife_1388 Acife_1388 Acife_1388 1395715 1396803 + Phosphoserine aminotransferase TIGRFAM: Phosphoserine aminotransferase~HAMAP: Phosphoserine aminotransferase~KEGG: afr:AFE_0895 phosphoserine aminotransferase~PFAM: Aminotransferase%2C class V/Cysteine desulfurase gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1388 Acife_1389 Acife_1389 Acife_1389 1396819 1397895 + chorismate mutase KEGG: afr:AFE_0897 chorismate mutase/prephenate dehydratase~TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein%2C chorismate mutase domain~PFAM: Prephenate dehydratase%3B Chorismate mutase%2C type II%3B Amino acid-binding ACT gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1389 Acife_1390 Acife_1390 Acife_1390 1397895 1398992 + Histidinol-phosphate aminotransferase TIGRFAM: Histidinol-phosphate aminotransferase~HAMAP: Histidinol-phosphate aminotransferase~KEGG: afr:AFE_0898 histidinol-phosphate aminotransferase~PFAM: Aminotransferase%2C class I/II gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1390 Acife_1391 Acife_1391 Acife_1391 1398997 1400013 + phospho-2-dehydro-3-deoxyheptonate aldolase KEGG: afr:AFE_0899 phospho-2-dehydro-3-deoxyheptonate aldolase~TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase%2C subtype 2~PFAM: DAHP synthetase I/KDSA gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1391 Acife_1392 Acife_1392 Acife_1392 1400015 1400890 + Prephenate dehydrogenase PFAM: Prephenate dehydrogenase~KEGG: afr:AFE_0900 prephenate dehydrogenase gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1392 Acife_1393 Acife_1393 Acife_1393 1400894 1402195 + 3-phosphoshikimate 1-carboxyvinyltransferase TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase%2C subgroup~HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase%2C subgroup~KEGG: afr:AFE_0901 3-phosphoshikimate 1-carboxyvinyltransferase~PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase%2C core gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1393 Acife_1394 Acife_1394 Acife_1394 1402192 1402872 + Cytidylate kinase TIGRFAM: Cytidylate kinase~HAMAP: Cytidylate kinase~KEGG: afr:AFE_0902 cytidylate kinase~PFAM: Cytidylate kinase region gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1394 Acife_1395 Acife_1395 Acife_1395 1402951 1404657 + ribosomal protein S1 KEGG: afr:AFE_0903 ribosomal protein S1~TIGRFAM: Ribosomal S1 synthesis/modification protein~PFAM: Ribosomal protein S1%2C RNA binding domain gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1395 Acife_1396 Acife_1396 Acife_1396 1404821 1405126 + integration host factor%2C beta subunit TIGRFAM: Integration host factor%2C beta subunit~PFAM: Histone-like bacterial DNA-binding protein~KEGG: afr:AFE_0905 integration host factor%2C beta subunit~SMART: Histone-like bacterial DNA-binding protein gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1396 Acife_1397 Acife_1397 Acife_1397 1405127 1406296 + hypothetical protein KEGG: afe:Lferr_1027 hypothetical protein gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1397 Acife_1398 Acife_1398 Acife_1398 1406293 1407009 + orotidine 5'-phosphate decarboxylase KEGG: afr:AFE_0907 orotidine 5`-phosphate decarboxylase~TIGRFAM: Orotidine 5'-phosphate decarboxylase%2C subfamily 1%2C core~PFAM: Orotidine 5'-phosphate decarboxylase%2C core gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1398 Acife_1399 Acife_1399 Acife_1399 1407075 1407662 + Orotate phosphoribosyltransferase TIGRFAM: Orotate phosphoribosyltransferase%2C Thermus type~HAMAP: Orotate phosphoribosyltransferase~KEGG: afe:Lferr_1029 orotate phosphoribosyltransferase~PFAM: Phosphoribosyltransferase gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1399 Acife_1400 Acife_1400 Acife_1400 1407736 1409022 + Trigger factor TIGRFAM: Trigger factor~HAMAP: Trigger factor~KEGG: afr:AFE_0909 trigger factor~PFAM: Trigger factor%2C ribosome-binding%2C bacterial%3B Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%3B Trigger factor%2C C-terminal%2C bacterial gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1400 Acife_1401 Acife_1401 Acife_1401 1409068 1409712 + ATP-dependent Clp protease proteolytic subunit TIGRFAM: Peptidase S14%2C ClpP~HAMAP: ATP-dependent Clp protease proteolytic subunit~KEGG: afr:AFE_0910 ATP-dependent Clp protease%2C proteolytic subunit ClpP~PFAM: Peptidase S14%2C ClpP gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1401 Acife_1402 Acife_1402 Acife_1402 1409731 1411002 + ATP-dependent Clp protease ATP-binding subunit clpX SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: Clp protease%2C ATP-binding subunit ClpX~KEGG: afr:AFE_0911 ATP-dependent Clp protease%2C ATP-binding subunit ClpX~HAMAP: Clp protease%2C ATP-binding subunit ClpX~PFAM: ATPase associated with various cellular activities%2C AAA-2%3B Zinc finger%2C C4-type%3B Clp ATPase%2C C-terminal gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1402 Acife_1403 Acife_1403 Acife_1403 1411090 1413522 + anti-sigma H sporulation factor%2C LonB TIGRFAM: Peptidase S16%2C ATP-dependent protease La~PFAM: Peptidase S16%2C lon C-terminal%3B Peptidase S16%2C lon N-terminal%3B ATPase%2C AAA-type%2C core~KEGG: afe:Lferr_1033 ATP-dependent protease La~SMART: Peptidase S16%2C lon N-terminal%3B ATPase%2C AAA+ type%2C core gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1403 Acife_1404 Acife_1404 Acife_1404 1413766 1414038 + histone family protein DNA-binding protein KEGG: afr:AFE_0914 DNA-binding protein HU~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1404 Acife_1405 Acife_1405 Acife_1405 1414378 1415946 + hypothetical protein KEGG: afe:Lferr_1036 hypothetical protein gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1405 Acife_1406 Acife_1406 Acife_1406 1416004 1416447 - Protein of unknown function DUF2147 PFAM: Protein of unknown function DUF2147~KEGG: afr:AFE_1867 hypothetical protein gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1406 Acife_1407 Acife_1407 Acife_1407 1416785 1417405 + SOS-response transcriptional repressor%2C LexA TIGRFAM: Peptidase S24%2C LexA repressor~HAMAP: LexA repressor~KEGG: afr:AFE_1868 LexA repressor~PFAM: LexA DNA-binding region%3B Peptidase S24/S26A/S26B%2C conserved region gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1407 Acife_1408 Acife_1408 Acife_1408 1417603 1418454 + hypothetical protein KEGG: afe:Lferr_1547 hypothetical protein gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1408 Acife_1409 Acife_1409 Acife_1409 1418451 1421078 + aminopeptidase N KEGG: afr:AFE_1873 aminopeptidase N~TIGRFAM: Peptidase M1%2C alanyl aminopeptidase~PFAM: Peptidase M1%2C membrane alanine aminopeptidase%2C N-terminal gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1409 Acife_1410 Acife_1410 Acife_1410 1421110 1421451 + hypothetical protein gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1410 Acife_1411 Acife_1411 Acife_1411 1421464 1422933 - adenylate cyclase PFAM: Adenylate cyclase%3B CHAD~KEGG: afr:AFE_1874 adenylate cyclase gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1411 Acife_1412 Acife_1412 Acife_1412 1422917 1423555 - ParA-like protein KEGG: afr:AFE_1875 ParA-like protein gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1412 Acife_1413 Acife_1413 Acife_1413 1423568 1425673 - Polyphosphate kinase TIGRFAM: polyphosphate kinase 1~HAMAP: Polyphosphate kinase~KEGG: afr:AFE_1876 polyphosphate kinase~PFAM: Polyphosphate kinase gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1413 Acife_1414 Acife_1414 Acife_1414 1425670 1426533 - Bifunctional protein folD KEGG: afr:AFE_1877 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase~HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase~PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain%3B Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1414 Acife_1415 Acife_1415 Acife_1415 1426736 1429816 - acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: afr:AFE_1878 transporter%2C AcrB/AcrD/AcrF family gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1415 Acife_1416 Acife_1416 Acife_1416 1429827 1430918 - efflux transporter%2C RND family%2C MFP subunit KEGG: afr:AFE_1879 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1416 Acife_1417 Acife_1417 Acife_1417 1430962 1432506 - RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: afr:AFE_1880 RND efflux system%2C outer membrane lipoprotein%2C NodT family~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1417 Acife_1418 Acife_1418 Acife_1418 1432727 1433512 + Tetratricopeptide TPR_2 repeat-containing protein PFAM: Tetratricopeptide TPR2~KEGG: afr:AFE_1881 hypothetical protein gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1418 Acife_1419 Acife_1419 Acife_1419 1433579 1434157 - Septum formation protein Maf TIGRFAM: Maf-like protein~HAMAP: Maf-like protein~KEGG: afr:AFE_1882 maf protein~PFAM: Maf-like protein gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1419 Acife_1420 Acife_1420 Acife_1420 1434170 1436959 - Phosphoenolpyruvate carboxylase KEGG: afr:AFE_1883 phosphoenolpyruvate carboxylase~HAMAP: Phosphoenolpyruvate carboxylase~PFAM: Phosphoenolpyruvate carboxylase gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1420 Acife_1421 Acife_1421 Acife_1421 1437335 1437601 + Protein hfq TIGRFAM: Host factor Hfq~HAMAP: Protein hfq~KEGG: afr:AFE_1884 RNA chaperone Hfq~PFAM: Like-Sm ribonucleoprotein%2C core gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1421 Acife_1422 Acife_1422 Acife_1422 1437601 1438923 + GTP-binding proten HflX manually curated~TIGRFAM: GTP-binding protein%2C HflX~KEGG: afr:AFE_1885 GTP-binding protein HflX~PFAM: GTP-binding protein%2C HSR1-related gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1422 Acife_1423 Acife_1423 Acife_1423 1438938 1440134 + HflK protein TIGRFAM: HflK~PFAM: Band 7 protein~KEGG: afr:AFE_1886 HflK protein~SMART: Band 7 protein gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1423 Acife_1424 Acife_1424 Acife_1424 1440131 1441003 + HflC protein TIGRFAM: HflC~PFAM: Band 7 protein~KEGG: afr:AFE_1887 HflC protein~SMART: Band 7 protein gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1424 Acife_1425 Acife_1425 Acife_1425 1441000 1442202 + ATP phosphoribosyltransferase regulatory subunit KEGG: afr:AFE_1888 ATP phosphoribosyltransferase regulatory subunit~HAMAP: ATP phosphoribosyltransferase regulatory subunit~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1425 Acife_1426 Acife_1426 Acife_1426 1442246 1443535 + Adenylosuccinate synthetase SMART: Adenylosuccinate synthetase~TIGRFAM: Adenylosuccinate synthetase~KEGG: afr:AFE_1889 adenylosuccinate synthetase~HAMAP: Adenylosuccinate synthetase~PFAM: Adenylosuccinate synthetase gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1426 Acife_1427 Acife_1427 Acife_1427 1443639 1443911 + iron oxidase KEGG: afr:AFE_2732 iron oxidase gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1427 Acife_1428 Acife_1428 Acife_1428 1444361 1446601 + ribonuclease R TIGRFAM: Ribonuclease R%2C bacterial%3B Ribonuclease II/ribonuclease R%2C bacteria~PFAM: Ribonuclease II/R%3B Ribonuclease B%2C OB region N-terminal%3B Ribonuclease R winged-helix domain%3B Ribosomal protein S1%2C RNA binding domain~KEGG: afr:AFE_1891 ribonuclease R~SMART: Cold shock protein gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1428 Acife_1429 Acife_1429 Acife_1429 1446656 1447441 - polyphosphate kinase 2 KEGG: afr:AFE_1892 hypothetical protein~TIGRFAM: polyphosphate kinase 2~PFAM: Polyphosphate kinase 2 gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1429 Acife_1430 Acife_1430 Acife_1430 1447474 1448862 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation~KEGG: afr:AFE_1893 dihydrolipoamide dehydrogenase gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1430 Acife_1431 Acife_1431 Acife_1431 1448965 1449702 - molybdopterin binding domain-containing protein PFAM: Molybdopterin binding~KEGG: afr:AFE_1894 hypothetical protein gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1431 Acife_1432 Acife_1432 Acife_1432 1449699 1450364 - phosphoribosylglycinamide formyltransferase KEGG: afr:AFE_1896 phosphoribosylglycinamide formyltransferase~TIGRFAM: Phosphoribosylglycinamide formyltransferase~PFAM: Formyl transferase%2C N-terminal gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1432 Acife_1433 Acife_1433 Acife_1433 1450357 1451394 - phosphoribosylformylglycinamidine cyclo-ligase KEGG: afe:Lferr_1573 phosphoribosylformylglycinamidine cyclo-ligase~TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase~PFAM: AIR synthase related protein%2C C-terminal%3B AIR synthase related protein gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1433 Acife_1434 Acife_1434 Acife_1434 1451539 1452156 - Manganese/iron superoxide dismutase PFAM: Manganese/iron superoxide dismutase%2C C-terminal~KEGG: afr:AFE_1898 superoxide dismutase gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1434 Acife_1435 Acife_1435 Acife_1435 1452314 1452862 + CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase KEGG: afr:AFE_1900 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase%2C putative~TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1435 Acife_1436 Acife_1436 Acife_1436 1452859 1453575 + DnaA regulatory inactivator Hda KEGG: afe:Lferr_1576 DnaA regulatory inactivator Hda~TIGRFAM: Chromosomal replication control%2C regulator Hda~PFAM: Chromosomal replication control%2C initiator (DnaA)/regulator (Hda) gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1436 Acife_1437 Acife_1437 Acife_1437 1453572 1454453 + ribonuclease BN KEGG: afe:Lferr_1577 ribonuclease BN~TIGRFAM: Ribonuclease BN~PFAM: Ribonuclease BN-related gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1437 Acife_1438 Acife_1438 Acife_1438 1454550 1455011 + protein of unknown function DUF177 PFAM: Protein of unknown function DUF177~KEGG: afr:AFE_1903 hypothetical protein gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1438 Acife_1439 Acife_1439 Acife_1439 1455052 1455237 + 50S ribosomal protein L32 TIGRFAM: Ribosomal protein L32p~HAMAP: Ribosomal protein L32p~KEGG: afr:AFE_1904 50S ribosomal protein L32~PFAM: Ribosomal protein L32p gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1439 Acife_1440 Acife_1440 Acife_1440 1455275 1456300 + Phosphate acyltransferase TIGRFAM: Phospholipid biosynthesis protein%2C PlsX like~HAMAP: Phospholipid biosynthesis protein%2C PlsX like~KEGG: afr:AFE_1905 fatty acid/phospholipid synthesis protein PlsX~PFAM: Fatty acid synthesis plsX protein gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1440 Acife_1441 Acife_1441 Acife_1441 1456297 1457241 + 3-oxoacyl-(acyl-carrier-protein) synthase 3 TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH)~HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH)~KEGG: afr:AFE_1906 3-oxoacyl-(acyl-carrier-protein) synthase III~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal%3B 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1441 Acife_1442 Acife_1442 Acife_1442 1457280 1458215 + malonyl CoA-acyl carrier protein transacylase KEGG: afr:AFE_1907 malonyl CoA-acyl carrier protein transacylase~TIGRFAM: Malonyl CoA-acyl carrier protein transacylase~PFAM: Acyl transferase gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1442 Acife_1443 Acife_1443 Acife_1443 1458215 1458964 + 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: afr:AFE_1908 3-oxoacyl-(acyl-carrier-protein) reductase~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase~PFAM: Short-chain dehydrogenase/reductase SDR gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1443 Acife_1444 Acife_1444 Acife_1444 1459049 1459297 + Acyl carrier protein TIGRFAM: Acyl carrier protein (ACP)~HAMAP: Acyl carrier protein (ACP)~KEGG: afr:AFE_1909 acyl carrier protein~PFAM: Phosphopantetheine-binding gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1444 Acife_1445 Acife_1445 Acife_1445 1459336 1460577 + 3-oxoacyl-(acyl-carrier-protein) synthase 2 KEGG: afr:AFE_1910 3-oxoacyl-(acyl-carrier-protein) synthase II~TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2~PFAM: Beta-ketoacyl synthase%2C N-terminal%3B Beta-ketoacyl synthase%2C C-terminal gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1445 Acife_1446 Acife_1446 Acife_1446 1460586 1461440 + aminodeoxychorismate lyase KEGG: afr:AFE_1911 4-amino-4-deoxychorismate lyase%2C putative~TIGRFAM: Aminodeoxychorismate lyase%2C class IV~PFAM: Aminotransferase%2C class IV gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1446 Acife_1447 Acife_1447 Acife_1447 1461437 1462450 + aminodeoxychorismate lyase KEGG: afe:Lferr_1587 aminodeoxychorismate lyase~TIGRFAM: Uncharacterised protein family YceG-like~PFAM: Uncharacterised protein family YceG-like gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1447 Acife_1448 Acife_1448 Acife_1448 1462447 1463097 + Thymidylate kinase TIGRFAM: Thymidylate kinase~HAMAP: Thymidylate kinase~KEGG: afr:AFE_1913 thymidylate kinase~PFAM: Thymidylate kinase-like gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1448 Acife_1449 Acife_1449 Acife_1449 1463094 1464095 + DNA polymerase III%2C delta prime subunit KEGG: afr:AFE_1914 DNA polymerase III%2C delta prime subunit gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1449 Acife_1450 Acife_1450 Acife_1450 1464079 1464435 + type IV pilus assembly PilZ PFAM: Type IV pilus assembly PilZ~KEGG: afr:AFE_1915 type IV pilus assembly protein PilZ%2C putative gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1450 Acife_1451 Acife_1451 Acife_1451 1464610 1465038 - pseudogene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1451 Acife_1452 Acife_1452 Acife_1452 1465292 1465499 + pseudogene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1452 Acife_1453 Acife_1453 Acife_1453 1465642 1466397 + hypothetical protein gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1453 Acife_1454 Acife_1454 Acife_1454 1466833 1467048 + hypothetical protein KEGG: rrs:RoseRS_1787 hypothetical protein gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1454 Acife_1455 Acife_1455 Acife_1455 1467045 1467260 + YcfA family protein PFAM: YcfA-like~KEGG: cph:Cpha266_1441 YcfA family protein gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1455 Acife_1456 Acife_1456 Acife_1456 1467775 1468200 - protein of unknown function DUF302 PFAM: Protein of unknown function DUF302~KEGG: aca:ACP_2485 hypothetical protein gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1456 Acife_1457 Acife_1457 Acife_1457 1468202 1468900 - respiratory nitrate reductase%2C gamma subunit KEGG: eba:ebA6282 nitrate reductase%2C gamma subunit~TIGRFAM: Nitrate reductase%2C gamma subunit~PFAM: Nitrate reductase%2C gamma subunit gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1457 Acife_1458 Acife_1458 Acife_1458 1468897 1469442 - nitrate reductase molybdenum cofactor assembly chaperone KEGG: tbd:Tbd_1405 respiratory nitrate reductase chaperone NarJ~TIGRFAM: Nitrate reductase%2C delta subunit~PFAM: Nitrate reductase%2C delta subunit gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1458 Acife_1459 Acife_1459 Acife_1459 1469445 1471004 - nitrate reductase%2C beta subunit TIGRFAM: Nitrate reductase%2C beta subunit~KEGG: tbd:Tbd_1404 respiratory nitrate reductase beta subunit gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1459 Acife_1460 Acife_1460 Acife_1460 1471001 1474765 - nitrate reductase%2C alpha subunit KEGG: eba:ebA6286 nitrate reductase%2C alpha chain~TIGRFAM: Nitrate reductase%2C alpha subunit~PFAM: Molybdopterin oxidoreductase%3B Molybdopterin oxidoreductase Fe4S4 region%3B Molydopterin dinucleotide-binding region gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1460 Acife_1461 Acife_1461 Acife_1461 1474815 1475999 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: amv:ACMV_16320 putative major facilitator superfamily transporter gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1461 Acife_1462 Acife_1462 Acife_1462 1476361 1476894 + Hemerythrin HHE cation binding domain protein PFAM: Haemerythrin/HHE cation-binding motif~KEGG: bvi:Bcep1808_6183 hemerythrin HHE cation binding domain-containing protein gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1462 Acife_1463 Acife_1463 Acife_1463 1477009 1477476 + protein of unknown function DUF1971 PFAM: Protein of unknown function DUF1971~KEGG: afr:AFE_1844 ferredoxin gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1463 Acife_1464 Acife_1464 Acife_1464 1477607 1478257 + Glutathione S-transferase domain-containing protein PFAM: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal~KEGG: nwa:Nwat_0016 glutathione S-transferase domain-containing protein gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1464 Acife_1465 Acife_1465 Acife_1465 1478374 1478613 + hypothetical protein KEGG: afr:AFE_1845 hypothetical protein gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1465 Acife_1466 Acife_1466 Acife_1466 1478606 1479724 + C4-dicarboxylate transporter/malic acid transport protein PFAM: C4-dicarboxylate transporter/malic acid transport protein~KEGG: afr:AFE_1847 C4-dicarboxylate transporter/malic acid transport protein%2C putative gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1466 Acife_1467 Acife_1467 Acife_1467 1479884 1480846 + hypothetical protein KEGG: afr:AFE_1028 hypothetical protein gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1467 Acife_1468 Acife_1468 Acife_1468 1481344 1481550 - molybdenum-pterin binding protein KEGG: afr:AFE_1545 molybdenum-pterin binding protein~TIGRFAM: Molybdenum-pterin binding~PFAM: Transport-associated OB%2C type 1 gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1468 Acife_1469 Acife_1469 Acife_1469 1481689 1483017 - hypothetical protein KEGG: afr:AFE_1497 hypothetical protein gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1469 Acife_1470 Acife_1470 Acife_1470 1483113 1484149 - pseudogene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1470 Acife_1471 Acife_1471 Acife_1471 1485257 1485967 - transcriptional regulator%2C LuxR family KEGG: afr:AFE_1997 autoinducer-binding transcriptional regulator%2C LuxR family~PFAM: Autoinducer-binding%3B Transcription regulator LuxR%2C C-terminal~SMART: Transcription regulator LuxR%2C C-terminal gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1471 Acife_1472 Acife_1472 Acife_1472 1486433 1486981 + hypothetical protein KEGG: azo:azo2571 hypothetical protein gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1472 Acife_1473 Acife_1473 Acife_1473 1487081 1487440 + hypothetical protein KEGG: glo:Glov_0119 hypothetical protein gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1473 Acife_1474 Acife_1474 Acife_1474 1487493 1488794 + Tryptophan synthase beta chain TIGRFAM: Tryptophan synthase%2C beta chain~HAMAP: Tryptophan synthase beta chain~KEGG: mag:amb4010 tryptophan synthase subunit beta~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1474 Acife_1475 Acife_1475 Acife_1475 1488794 1489622 + pseudogene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1475 Acife_1476 Acife_1476 Acife_1476 1489643 1490021 - pseudogene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1476 Acife_1477 Acife_1477 Acife_1477 1490054 1490995 - protein of unknown function DUF6 transmembrane PFAM: Protein of unknown function DUF6%2C transmembrane~KEGG: ypy:YPK_1524 hypothetical protein gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1477 Acife_1478 Acife_1478 Acife_1478 1491270 1491617 + regulatory protein ArsR KEGG: btb:BMB171_C1784 ArsR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1478 Acife_1479 Acife_1479 Acife_1479 1491774 1492559 + transcriptional regulator KEGG: rah:Rahaq_4788 transcriptional regulator gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1479 Acife_1480 Acife_1480 Acife_1480 1492660 1493031 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: afe:Lferr_1669 hypothetical protein gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1480 Acife_1481 Acife_1481 Acife_1481 1493028 1493456 + UPF0310 protein KEGG: mci:Mesci_1735 hypothetical protein~HAMAP: UPF0310 protein~PFAM: Uncharacterised protein family UPF0310 gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1481 Acife_1482 Acife_1482 Acife_1482 1493520 1494131 - transcriptional regulator%2C TetR family PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: pol:Bpro_2654 TetR family transcriptional regulator gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1482 Acife_1483 Acife_1483 Acife_1483 1494205 1494672 + protein of unknown function DUF1348 PFAM: Protein of unknown function DUF1348~KEGG: aba:Acid345_2217 hypothetical protein gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1483 Acife_1484 Acife_1484 Acife_1484 1494746 1495942 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: sil:SPO3481 hypothetical protein gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1484 Acife_1485 Acife_1485 Acife_1485 1496103 1497188 + Histidinol-phosphate aminotransferase TIGRFAM: Histidinol-phosphate aminotransferase~HAMAP: Histidinol-phosphate aminotransferase~KEGG: pfl:PFL_0930 histidinol-phosphate aminotransferase~PFAM: Aminotransferase%2C class I/II gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1485 Acife_1486 Acife_1486 Acife_1486 1497299 1497844 + NADPH-dependent FMN reductase KEGG: afr:AFE_2803 FMN reductase%2C NADPH-dependent~manually curated~PFAM: NADPH-dependent FMN reductase gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1486 Acife_1487 Acife_1487 Acife_1487 1497844 1498323 + Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase~KEGG: afr:AFE_2804 hypothetical protein gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1487 Acife_1488 Acife_1488 Acife_1488 1498325 1498417 + hypothetical protein gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1488 Acife_1489 Acife_1489 Acife_1489 1498430 1499292 + pseudogene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1489 Acife_1490 Acife_1490 Acife_1490 1499279 1499938 + FMN-binding negative transcriptional regulator PFAM: Negative transcriptional regulator~KEGG: afr:AFE_2006 transcriptional regulator%2C putative gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1490 Acife_1491 Acife_1491 Acife_1491 1499935 1501140 + ThiJ/PfpI domain-containing protein PFAM: ThiJ/PfpI%3B GCN5-related N-acetyltransferase~KEGG: afr:AFE_2005 isonitrile hydratase%2C putative gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1491 Acife_1492 Acife_1492 Acife_1492 1501146 1501955 + phenazine biosynthesis protein PhzF family KEGG: gca:Galf_1512 phenazine biosynthesis protein PhzF family~TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein~PFAM: Phenazine biosynthesis PhzC/PhzF protein gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1492 Acife_1493 Acife_1493 Acife_1493 1502159 1502569 + glutathione-dependent formaldehyde-activating GFA KEGG: tin:Tint_2008 glutathione-dependent formaldehyde-activating GFA~manually curated~PFAM: Glutathione-dependent formaldehyde-activating%2C GFA gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1493 Acife_1494 Acife_1494 Acife_1494 1502691 1503161 + Lipoprotein signal peptidase TIGRFAM: Peptidase A8%2C signal peptidase II~HAMAP: Peptidase A8%2C signal peptidase II~KEGG: dsh:Dshi_0359 lipoprotein signal peptidase~PFAM: Peptidase A8%2C signal peptidase II gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1494 Acife_1495 Acife_1495 Acife_1495 1503468 1503865 - pseudogene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1495 Acife_1496 Acife_1496 Acife_1496 1503874 1504134 - hypothetical protein KEGG: xcv:XCVd0102 hypothetical protein gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1496 Acife_1497 Acife_1497 Acife_1497 1504240 1504500 - hypothetical protein gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1497 Acife_1498 Acife_1498 Acife_1498 1504693 1504815 - pseudogene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1498 Acife_1499 Acife_1499 Acife_1499 1504935 1506227 - HipA N-terminal domain protein KEGG: rpx:Rpdx1_0487 HipA N-terminal domain-containing protein~TIGRFAM: HipA%2C N-terminal~PFAM: HipA-like%2C C-terminal%3B HipA-like%2C N-terminal gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1499 Acife_1500 Acife_1500 Acife_1500 1506230 1506475 - helix-turn-helix domain protein KEGG: hba:Hbal_3181 transcriptional regulator%2C XRE family~PFAM: Helix-turn-helix type 3~SMART: Helix-turn-helix type 3 gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1500 Acife_1501 Acife_1501 Acife_1501 1507075 1508763 + DNA polymerase III%2C subunits gamma and tau TIGRFAM: DNA polymerase III%2C subunit gamma/ tau~PFAM: ATPase%2C AAA-type%2C core~KEGG: afr:AFE_1919 DNA polymerase III%2C subunits gamma and tau~SMART: ATPase%2C AAA+ type%2C core gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1501 Acife_1502 Acife_1502 Acife_1502 1508790 1509113 + UPF0133 protein ybaB TIGRFAM: Uncharacterised protein family UPF0133~HAMAP: Uncharacterised protein family UPF0133~KEGG: afr:AFE_1920 hypothetical protein~PFAM: Uncharacterised protein family UPF0133 gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1502 Acife_1503 Acife_1503 Acife_1503 1509120 1509719 + Recombination protein recR KEGG: afr:AFE_1921 recombination protein RecR~PFAM: Toprim domain%3B Zinc finger C4-type%2C RecR~manually curated~TIGRFAM: RecR protein~SMART: Toprim domain%2C subgroup~HAMAP: Recombination protein recR gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1503 Acife_1504 Acife_1504 Acife_1504 1509780 1510997 + ammonium transporter PFAM: Ammonium transporter~KEGG: afr:AFE_1922 ammonium transporter family protein gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1504 Acife_1505 Acife_1505 Acife_1505 1511000 1511851 + YjeF-related protein KEGG: afr:AFE_1923 YjeF-related protein~TIGRFAM: Uncharacterised protein family%2C carbohydrate kinase-related~PFAM: Uncharacterised protein family%2C carbohydrate kinase-related gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1505 Acife_1506 Acife_1506 Acife_1506 1511838 1513187 + adenosylmethionine-8-amino-7-oxononanoate aminotransferase KEGG: afr:AFE_1924 adenosylmethionine-8-amino-7-oxononanoate aminotransferase~TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase~PFAM: Aminotransferase class-III gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1506 Acife_1507 Acife_1507 Acife_1507 1513187 1513642 + CBS domain containing membrane protein KEGG: afr:AFE_1925 CBS domain protein~PFAM: Cystathionine beta-synthase%2C core~SMART: Cystathionine beta-synthase%2C core gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1507 Acife_1508 Acife_1508 Acife_1508 1513655 1514140 + Uncharacterized protein family UPF0079%2C ATPase KEGG: afr:AFE_1926 conserved hypothetical protein TIGR00150~TIGRFAM: Uncharacterised protein family UPF0079%2C ATPase bacteria~PFAM: Uncharacterised protein family UPF0079%2C ATPase bacteria gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1508 Acife_1509 Acife_1509 Acife_1509 1514130 1515923 + DNA mismatch repair protein mutL TIGRFAM: DNA mismatch repair protein%2C N-terminal~HAMAP: DNA mismatch repair protein mutL~KEGG: afr:AFE_1927 mismatch repair protein MutL~PFAM: MutL%2C C-terminal%2C dimerisation%3B DNA mismatch repair protein%2C C-terminal%3B ATP-binding region%2C ATPase-like gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1509 Acife_1510 Acife_1510 Acife_1510 1515920 1516846 + tRNA dimethylallyltransferase TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~HAMAP: tRNA dimethylallyltransferase~KEGG: afr:AFE_1928 tRNA delta(2)-isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1510 Acife_1511 Acife_1511 Acife_1511 1516926 1517396 + Nucleoside diphosphate kinase HAMAP: Nucleoside diphosphate kinase~PFAM: Nucleoside diphosphate kinase%2C core~KEGG: afr:AFE_1929 nucleoside diphosphate kinase~SMART: Nucleoside diphosphate kinase%2C core gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1511 Acife_1512 Acife_1512 Acife_1512 1517397 1518488 + Ribosomal RNA large subunit methyltransferase N TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN%3B~HAMAP: Ribosomal RNA large subunit methyltransferase RlmN%3B~KEGG: afe:Lferr_1602 radical SAM enzyme%2C Cfr family~PFAM: Radical SAM gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1512 Acife_1513 Acife_1513 Acife_1513 1518485 1519330 + type IV pilus biogenesis/stability protein PilW KEGG: afe:Lferr_1603 type IV pilus biogenesis/stability protein PilW~TIGRFAM: Pilus biogenesis/stability type IV%2C PilW~PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR2 gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1513 Acife_1514 Acife_1514 Acife_1514 1519343 1520323 + transcriptional regulator%2C XRE family SMART: Helix-turn-helix type 3~KEGG: afe:Lferr_1604 XRE family transcriptional regulator gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1514 Acife_1515 Acife_1515 Acife_1515 1520313 1521413 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type~KEGG: afr:AFE_1933 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase~PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1515 Acife_1516 Acife_1516 Acife_1516 1521446 1522765 + Histidyl-tRNA synthetase TIGRFAM: Histidyl-tRNA synthetase%2C class IIa%2C subgroup~HAMAP: Histidyl-tRNA synthetase%2C class IIa%2C subgroup~KEGG: afr:AFE_1934 histidyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1516 Acife_1517 Acife_1517 Acife_1517 1522762 1523373 + hypothetical protein KEGG: afr:AFE_1935 hypothetical protein gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1517 Acife_1518 Acife_1518 Acife_1518 1523370 1524557 + outer membrane assembly lipoprotein YfgL TIGRFAM: Outer membrane assembly lipoprotein YfgL~PFAM: Pyrrolo-quinoline quinone repeat~KEGG: afr:AFE_1936 PQQ enzyme repeat domain protein~SMART: Pyrrolo-quinoline quinone beta-propeller repeat gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1518 Acife_1519 Acife_1519 Acife_1519 1524568 1525917 + GTP-binding protein engA TIGRFAM: GTP-binding%2C EngA%3B Small GTP-binding protein~HAMAP: GTP-binding%2C EngA~KEGG: afr:AFE_1937 GTP-binding protein EngA~PFAM: GTP-binding protein%2C HSR1-related gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1519 Acife_1520 Acife_1520 Acife_1520 1525918 1526334 + hypothetical protein KEGG: afr:AFE_1938 hypothetical protein gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1520 Acife_1521 Acife_1521 Acife_1521 1526306 1526809 + phosphohistidine phosphatase%2C SixA KEGG: afr:AFE_2314 phosphohistidine phosphatase SixA~TIGRFAM: Phosphohistidine phosphatase SixA%2C subgroup~PFAM: Phosphoglycerate mutase gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1521 Acife_1522 Acife_1522 Acife_1522 1526882 1527253 + hypothetical protein KEGG: afr:AFE_2508 hypothetical protein gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1522 Acife_1523 Acife_1523 Acife_1523 1527520 1528608 + phosphate ABC transporter%2C periplasmic phosphate-binding protein KEGG: afe:Lferr_1611 phosphate ABC transporter periplasmic phosphate-binding protein~TIGRFAM: Periplasmic phosphate binding protein~PFAM: Bacterial extracellular solute-binding%2C family 1 gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1523 Acife_1524 Acife_1524 Acife_1524 1528731 1529687 + phosphate ABC transporter%2C inner membrane subunit PstC KEGG: afr:AFE_1940 phosphate ABC transporter%2C permease protein PstC~TIGRFAM: Phosphate ABC transporter%2C permease protein PstC~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1524 Acife_1525 Acife_1525 Acife_1525 1529687 1530598 + phosphate ABC transporter%2C inner membrane subunit PstA KEGG: afr:AFE_1941 phosphate ABC transporter%2C permease protein%2C putative~TIGRFAM: Phosphate transport system permease protein 2~PFAM: Binding-protein-dependent transport systems inner membrane component gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1525 Acife_1526 Acife_1526 Acife_1526 1530620 1531600 - Hemerythrin HHE cation binding domain protein PFAM: Haemerythrin/HHE cation-binding motif~KEGG: afr:AFE_1942 hypothetical protein gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1526 Acife_1527 Acife_1527 Acife_1527 1532276 1532992 - (Ni/Fe) hydrogenase%2C b-type cytochrome subunit%2C putative KEGG: afr:AFE_2429 [Ni/Fe] hydrogenase%2C b-type cytochrome subunit%2C putative gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1527 Acife_1528 Acife_1528 Acife_1528 1533246 1534376 + Carbohydrate-selective porin OprB PFAM: Carbohydrate-selective porin OprB~KEGG: afr:AFE_2250 carbohydrate-selective porin%2C OprB family gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1528 Acife_1529 Acife_1529 Acife_1529 1534606 1535298 + major intrinsic protein PFAM: Major intrinsic protein~KEGG: afr:AFE_0154 MIP family channel protein gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1529 Acife_1530 Acife_1530 Acife_1530 1535416 1537179 - arsenite-activated ATPase ArsA TIGRFAM: ATPase%2C anion-transporting~PFAM: ATPase%2C anion-transporting~KEGG: psa:PST_0237 arsenical pump-driving ATPase~SMART: ATPase%2C AAA+ type%2C core gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1530 Acife_1531 Acife_1531 Acife_1531 1537220 1537582 - Arsenical resistance operon trans-acting repressor ArsD PFAM: Arsenical resistance operon trans-acting repressor ArsD~KEGG: psa:PST_0238 arsenic operon regulator gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1531 Acife_1532 Acife_1532 Acife_1532 1537622 1538107 - protein tyrosine phosphatase KEGG: afr:AFE_2860 arsenate reductase~PFAM: Protein-tyrosine phosphatase%2C low molecular weight~SMART: Protein-tyrosine phosphatase%2C low molecular weight gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1532 Acife_1533 Acife_1533 Acife_1533 1538107 1538469 - regulatory protein ArsR SMART: HTH transcriptional regulator%2C ArsR~KEGG: afr:AFE_2859 transcriptional regulator%2C ArsR gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1533 Acife_1534 Acife_1534 Acife_1534 1538611 1539546 - hypothetical protein KEGG: tin:Tint_1169 diguanylate cyclase/phosphodiesterase with GAF sensor gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1534 Acife_1535 Acife_1535 Acife_1535 1539909 1540322 - PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: gob:Gobs_1669 PilT protein domain-containing protein gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1535 Acife_1536 Acife_1536 Acife_1536 1540309 1540524 - Protein of unknown function DUF2191 PFAM: Protein of unknown function DUF2191~KEGG: tmt:Tmath_2080 protein of unknown function DUF2191 gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1536 Acife_1537 Acife_1537 Acife_1537 1540549 1540647 - hypothetical protein gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1537 Acife_1538 Acife_1538 Acife_1538 1540700 1540927 - prevent-host-death family protein TIGRFAM: Prevent-host-death protein~KEGG: app:CAP2UW1_3555 prevent-host-death family protein gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1538 Acife_1539 Acife_1539 Acife_1539 1541083 1541877 - filamentation induced by cAMP protein Fic PFAM: Filamentation induced by cAMP/death on curing%2C related~KEGG: plu:plu0253 hypothetical protein gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1539 Acife_1540 Acife_1540 Acife_1540 1541996 1542248 + pseudogene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1540 Acife_1541 Acife_1541 Acife_1541 1542364 1542690 - transcriptional modulator of MazE/toxin%2C MazF PFAM: PemK-like protein~KEGG: rpf:Rpic12D_5124 transcriptional modulator of MazE/toxin%2C MazF gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1541 Acife_1542 Acife_1542 Acife_1542 1542687 1542944 - SpoVT/AbrB domain-containing protein PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: rpf:Rpic12D_5125 transcriptional regulator/antitoxin%2C MazE gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1542 Acife_1543 Acife_1543 Acife_1543 1543165 1543437 - addiction module toxin%2C RelE/StbE family KEGG: hna:Hneap_1625 addiction module toxin%2C RelE/StbE family~TIGRFAM: Addiction module toxin%2C RelE/StbE~PFAM: Plasmid stabilisation system gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1543 Acife_1544 Acife_1544 Acife_1544 1543421 1543645 - CopG domain protein DNA-binding domain protein KEGG: hna:Hneap_1626 CopG domain protein DNA-binding domain protein gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1544 Acife_1545 Acife_1545 Acife_1545 1544234 1544524 - protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: azo:azo2026 hypothetical protein gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1545 Acife_1546 Acife_1546 Acife_1546 1544652 1544930 - transcriptional regulator%2C CopG family PFAM: CopG-like DNA-binding~KEGG: xfa:XF2075 hypothetical protein gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1546 Acife_1547 Acife_1547 Acife_1547 1544942 1545160 - Protein of unknown function DUF2283 PFAM: Protein of unknown function DUF2283~KEGG: tbd:Tbd_0450 hypothetical protein gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1547 Acife_1548 Acife_1548 Acife_1548 1545157 1545402 - protein of unknown function DUF1778 KEGG: tau:Tola_1305 hypothetical protein~manually curated~PFAM: Protein of unknown function DUF1778 gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1548 Acife_1549 Acife_1549 Acife_1549 1545636 1549205 - type 4 fimbrial biogenesis protein PilY1 KEGG: llo:LLO_2580 type 4 fimbrial biogenesis protein PilY1 gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1549 Acife_1550 Acife_1550 Acife_1550 1549220 1549816 - hypothetical protein gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1550 Acife_1551 Acife_1551 Acife_1551 1549828 1551009 - hypothetical protein KEGG: afr:AFE_0969 type IV pilin%2C putative gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1551 Acife_1552 Acife_1552 Acife_1552 1550978 1551454 - type IV pilus modification protein PilV TIGRFAM: Pilus modification type IV%2C PilV%3B Prepilin-type cleavage/methylation%2C N-terminal~KEGG: tgr:Tgr7_3228 Tfp pilus assembly protein PilV-like protein gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1552 Acife_1553 Acife_1553 Acife_1553 1551444 1552703 - Type II secretion system F domain-containing protein PFAM: Type II secretion system F domain~KEGG: afr:AFE_0972 type IV pilus biogenesis protein PilC gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1553 Acife_1554 Acife_1554 Acife_1554 1552783 1552995 - hypothetical protein KEGG: afr:AFE_1714 hypothetical protein gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1554 Acife_1555 Acife_1555 Acife_1555 1553016 1553507 - hypothetical protein gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1555 Acife_1556 Acife_1556 Acife_1556 1553529 1553789 - hypothetical protein gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1556 Acife_1557 Acife_1557 Acife_1557 1554008 1554505 - pilin%2C putative KEGG: afr:AFE_0416 pilin%2C putative gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1557 Acife_1558 Acife_1558 Acife_1558 1554885 1555379 + Sel1 domain protein repeat-containing protein PFAM: Sel1-like~KEGG: afr:AFE_0409 hypothetical protein gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1558 Acife_1559 Acife_1559 Acife_1559 1555374 1555724 - Rieske (2Fe-2S) iron-sulfur domain-containing protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: abo:ABO_2397 dioxygenase ferredoxin reductase component gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1559 Acife_1560 Acife_1560 Acife_1560 1555762 1556493 - hypothetical protein KEGG: afe:Lferr_1541 hypothetical protein gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1560 Acife_1561 Acife_1561 Acife_1561 1556804 1557013 - hypothetical protein KEGG: npu:Npun_F6102 hypothetical protein gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1561 Acife_1562 Acife_1562 Acife_1562 1557013 1557144 - pseudogene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1562 Acife_1563 Acife_1563 Acife_1563 1557214 1558428 + transposase IS204/IS1001/IS1096/IS1165 family protein PFAM: Transposase%2C IS204/IS1001/IS1096/IS1165~KEGG: cph:Cpha266_2270 transposase%2C IS204/IS1001/IS1096/IS1165 family protein gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1563 Acife_1564 Acife_1564 Acife_1564 1558502 1558576 - pseudogene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1564 Acife_1565 Acife_1565 Acife_1565 1558781 1559020 + hypothetical protein KEGG: aav:Aave_2943 hypothetical protein gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1565 Acife_1566 Acife_1566 Acife_1566 1559020 1559439 + protein of unknown function DUF132 TIGRFAM: Protein of unknown function DUF132~PFAM: PilT protein%2C N-terminal~KEGG: aav:Aave_2942 PilT domain-containing protein~SMART: Nucleotide binding protein%2C PINc gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1566 Acife_1567 Acife_1567 Acife_1567 1559444 1559539 + pseudogene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1567 Acife_1568 Acife_1568 Acife_1568 1559605 1560054 - hypothetical protein KEGG: rpf:Rpic12D_0692 hypothetical protein gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1568 Acife_1569 Acife_1569 Acife_1569 1560054 1560515 - transcriptional regulator%2C AbrB family KEGG: bxe:Bxe_A1174 AbrB family transcriptional regulator~TIGRFAM: Transcription regulator AbrB~PFAM: Transcription regulator AbrB/SpoV%2C predicted gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1569 Acife_1570 Acife_1570 Acife_1570 1560806 1561057 + SpoVT/AbrB domain-containing protein PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: app:CAP2UW1_4523 transcriptional regulator%2C AbrB family gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1570 Acife_1571 Acife_1571 Acife_1571 1561054 1561449 + hypothetical protein KEGG: xcb:XC_2599 hypothetical protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1571 Acife_1572 Acife_1572 Acife_1572 1561975 1563864 + Chaperone protein htpG HAMAP: Chaperone protein htpG~PFAM: Heat shock protein Hsp90%2C C-terminal%3B ATP-binding region%2C ATPase-like~KEGG: afr:AFE_3158 heat shock protein HtpG~SMART: ATP-binding region%2C ATPase-like gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1572 Acife_1573 Acife_1573 Acife_1573 1564029 1564118 - pseudogene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1573 Acife_1574 Acife_1574 Acife_1574 1564446 1564805 - plasmid maintenance system antidote protein%2C XRE family TIGRFAM: Addiction module antidote protein%2C HigA~PFAM: Helix-turn-helix type 3~KEGG: afr:AFE_1754 virulence-associated protein%2C putative~SMART: Helix-turn-helix type 3 gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1574 Acife_1575 Acife_1575 Acife_1575 1564822 1565103 - plasmid maintenance system killer PFAM: Plasmid maintenance system killer~KEGG: neu:NE1109 hypothetical protein gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1575 Acife_1576 Acife_1576 Acife_1576 1565176 1565430 - hypothetical protein gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1576 Acife_1577 Acife_1577 Acife_1577 1565646 1566518 - filamentation induced by cAMP protein Fic PFAM: Filamentation induced by cAMP/death on curing%2C related~KEGG: acl:ACL_0438 Fic-domain-containing protein gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1577 Acife_1578 Acife_1578 Acife_1578 1566883 1568031 - filamentation induced by cAMP protein Fic PFAM: Filamentation induced by cAMP/death on curing%2C related~KEGG: vpe:Varpa_5326 filamentation induced by camp protein fic gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1578 Acife_1579 Acife_1579 Acife_1579 1568562 1572560 + diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS%3B Twin-arginine translocation pathway%2C signal sequence~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B GAF%3B PAS fold-4~KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B PAS%3B PAC motif gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1579 Acife_1580 Acife_1580 Acife_1580 1572816 1572935 + pseudogene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1580 Acife_1581 Acife_1581 Acife_1581 1573027 1573200 - Proto-chlorophyllide reductase 57 kD subunit PFAM: Proto-chlorophyllide reductase 57kDa subunit~KEGG: afr:AFE_0095 hypothetical protein gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1581 Acife_1582 Acife_1582 Acife_1582 1573688 1573857 + pseudogene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1582 Acife_1583 Acife_1583 Acife_1583 1574032 1574985 + type IV pilus assembly PilZ PFAM: Type IV pilus assembly PilZ gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1583 Acife_1584 Acife_1584 Acife_1584 1574961 1575158 + hypothetical protein gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1584 Acife_1585 Acife_1585 Acife_1585 1575301 1576416 + hypothetical protein KEGG: tsa:AciPR4_1393 cellulose synthase operon protein YhjQ gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1585 Acife_1586 Acife_1586 Acife_1586 1576484 1580857 + cellulose synthase catalytic subunit (UDP-forming) KEGG: aca:ACP_0075 cellulose synthase I~TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming)~PFAM: Cellulose synthase BcsB%2C bacterial%3B Glycosyl transferase%2C family 2%3B Type IV pilus assembly PilZ gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1586 Acife_1587 Acife_1587 Acife_1587 1580854 1582026 + glycoside hydrolase family 8 PFAM: Glycoside hydrolase%2C family 8~KEGG: aca:ACP_0076 endo-1%2C4-D-glucanase gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1587 Acife_1588 Acife_1588 Acife_1588 1582005 1584386 + Tetratricopeptide TPR_1 repeat-containing protein PFAM: Tetratricopeptide TPR-1%3B Tetratricopeptide TPR-4~KEGG: tsa:AciPR4_1397 cellulose synthase operon C domain-containing protein gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1588 Acife_1589 Acife_1589 Acife_1589 1584389 1586017 + cellulose synthase operon C domain protein PFAM: Cellulose synthase operon C%2C C-terminal~KEGG: vpe:Varpa_3211 cellulose synthase operon c domain protein gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1589 Acife_1590 Acife_1590 Acife_1590 1586395 1587270 + Enoyl-CoA hydratase/isomerase PFAM: Crotonase%2C core~KEGG: tgr:Tgr7_0083 enoyl-CoA hydratase gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1590 Acife_1591 Acife_1591 Acife_1591 1587302 1589878 - multi-sensor hybrid histidine kinase KEGG: tgr:Tgr7_0082 Hpt sensor hybrid histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B Signal transduction response regulator%2C receiver region%3B Signal transduction histidine kinase%2C phosphotransfer (Hpt) region~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B Signal transduction response regulator%2C receiver region gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1591 Acife_1592 Acife_1592 Acife_1592 1589920 1591089 - response regulator receiver modulated metal dependent phosphohydrolase KEGG: tbd:Tbd_2670 metal dependent phosphohydrolase%2C HD region~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain%3B Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region%3B Metal-dependent phosphohydrolase%2C HD region gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1592 Acife_1593 Acife_1593 Acife_1593 1591372 1591536 - hypothetical protein gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1593 Acife_1594 Acife_1594 Acife_1594 1591836 1594124 + cellulose synthase catalytic subunit (UDP-forming) KEGG: amc:MADE_00787 cellulose synthase catalytic subunit~TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming)~PFAM: Glycosyl transferase%2C family 2%3B Type IV pilus assembly PilZ gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1594 Acife_1595 Acife_1595 Acife_1595 1594146 1596227 + Cellulose synthase BcsB PFAM: Cellulose synthase BcsB%2C bacterial~KEGG: amc:MADE_00788 CelB protein gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1595 Acife_1596 Acife_1596 Acife_1596 1596224 1598410 + hypothetical protein KEGG: met:M446_0104 hypothetical protein gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1596 Acife_1597 Acife_1597 Acife_1597 1598349 1599068 + pseudogene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1597 Acife_1598 Acife_1598 Acife_1598 1599098 1600351 + glycoside hydrolase family 8 PFAM: Glycoside hydrolase%2C family 8~KEGG: aca:ACP_0076 endo-1%2C4-D-glucanase gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1598 Acife_1599 Acife_1599 Acife_1599 1600394 1601698 + diguanylate cyclase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate cyclase%2C predicted~KEGG: afr:AFE_1712 diguanylate cyclase%2C putative~SMART: Diguanylate cyclase%2C predicted gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1599 Acife_1600 Acife_1600 Acife_1600 1601738 1601872 - pseudogene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1600 Acife_1601 Acife_1601 Acife_1601 1602480 1603253 + protein of unknown function DUF481 PFAM: Protein of unknown function DUF481~KEGG: afr:AFE_2054 hypothetical protein gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1601 Acife_1602 Acife_1602 Acife_1602 1603298 1603723 - NADPH-dependent 7-cyano-7-deazaguanine reductase TIGRFAM: Nitrile oxidoreductase%2C NADPH-dependent%2C QueF~HAMAP: Nitrile oxidoreductase%2C NADPH-dependent%2C QueF~KEGG: afr:AFE_0752 7-cyano-7-deazaguanine reductase~PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1602 Acife_1603 Acife_1603 Acife_1603 1603785 1607237 + chromosome segregation protein SMC KEGG: afe:Lferr_0900 chromosome segregation protein SMC~TIGRFAM: Chromosome segregation protein SMC~PFAM: RecF/RecN/SMC protein%2C N-terminal gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1603 Acife_1604 Acife_1604 Acife_1604 1607252 1607947 - HAD-superfamily subfamily IB hydrolase%2C TIGR01490 TIGRFAM: HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like%2C bacterial%3B HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like~KEGG: afr:AFE_0756 HAD-superfamily subfamily IB hydrolase%2C TIGR01490 gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1604 Acife_1605 Acife_1605 Acife_1605 1608088 1610103 + DNA ligase SMART: NAD-dependent DNA ligase%2C N-terminal%3B Helix-hairpin-helix DNA-binding motif%2C class 1%3B BRCT~TIGRFAM: NAD-dependent DNA ligase~KEGG: afr:AFE_0757 DNA ligase%2C NAD-dependent~HAMAP: DNA ligase~PFAM: NAD-dependent DNA ligase%2C adenylation%3B NAD-dependent DNA ligase%2C OB-fold%3B Zinc-finger%2C NAD-dependent DNA ligase C4-type%3B BRCT gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1605 Acife_1606 Acife_1606 Acife_1606 1610106 1610621 + ATP synthase epsilon chain TIGRFAM: ATPase%2C F1 complex%2C delta/epsilon subunit~HAMAP: ATPase%2C F1 complex%2C delta/epsilon subunit~KEGG: afr:AFE_0758 ATP synthase F1%2C epsilon subunit%2C putative~PFAM: ATPase%2C F1 complex%2C delta/epsilon subunit%2C N-terminal gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1606 Acife_1607 Acife_1607 Acife_1607 1610637 1611002 - protein of unknown function DUF202 PFAM: Protein of unknown function DUF202~KEGG: cno:NT01CX_0294 hypothetical protein gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1607 Acife_1608 Acife_1608 Acife_1608 1610999 1611316 - hypothetical protein KEGG: hypothetical protein gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1608 Acife_1609 Acife_1609 Acife_1609 1611450 1611935 - transcriptional regulator%2C Fur family KEGG: afr:AFE_1467 transcriptional regulator%2C Fur family gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1609 Acife_1610 Acife_1610 Acife_1610 1612053 1612532 + alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~KEGG: afr:AFE_1468 antioxidant%2C AhpC/Tsa family gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1610 Acife_1611 Acife_1611 Acife_1611 1612529 1613938 + PhoH family protein KEGG: afr:AFE_1469 PhoH family protein~PFAM: PhoH-like protein~SMART: Nucleotide binding protein%2C PINc gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1611 Acife_1612 Acife_1612 Acife_1612 1614002 1615915 + Biosynthetic arginine decarboxylase TIGRFAM: Arginine decarboxylase~HAMAP: Biosynthetic arginine decarboxylase~KEGG: afr:AFE_1471 arginine decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2 gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1612 Acife_1613 Acife_1613 Acife_1613 1615880 1616308 - hypothetical protein KEGG: afr:AFE_1470 hypothetical protein gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1613 Acife_1614 Acife_1614 Acife_1614 1616344 1617027 - fumarylacetoacetate (FAA) hydrolase PFAM: Fumarylacetoacetase%2C C-terminal-like~KEGG: afr:AFE_1472 fumarylacetoacetate hydrolase family protein gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1614 Acife_1615 Acife_1615 Acife_1615 1617024 1617440 - hypothetical protein KEGG: afr:AFE_1475 hypothetical protein gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1615 Acife_1616 Acife_1616 Acife_1616 1617449 1617943 - hypothetical protein KEGG: afr:AFE_1476 hypothetical protein gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1616 Acife_1617 Acife_1617 Acife_1617 1617933 1618268 - Sucraseferredoxin family protein PFAM: Sucraseferredoxin-like~KEGG: azo:azo3368 ferredoxin 2Fe-2S protein gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1617 Acife_1618 Acife_1618 Acife_1618 1618282 1618569 - ferredoxin-like protein KEGG: afr:AFE_1477 ferredoxin-like protein gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1618 Acife_1619 Acife_1619 Acife_1619 1618566 1619864 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal~KEGG: afr:AFE_1478 FixC protein gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1619 Acife_1620 Acife_1620 Acife_1620 1619881 1620975 - Electron transfer flavoprotein alpha subunit PFAM: Electron transfer flavoprotein%2C alpha subunit%2C C-terminal%3B Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~KEGG: afr:AFE_1479 electron transfer flavoprotein%2C alpha subunit gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1620 Acife_1621 Acife_1621 Acife_1621 1620995 1621837 - Electron transfer flavoprotein alpha/beta-subunit PFAM: Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal~KEGG: afr:AFE_1480 electron transfer flavoprotein%2C beta subunit gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1621 Acife_1622 Acife_1622 Acife_1622 1622028 1623626 - amine oxidase PFAM: Amine oxidase~KEGG: mca:MCA2837 amine oxidase gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1622 Acife_1623 Acife_1623 Acife_1623 1623774 1623974 + hypothetical protein gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1623 Acife_1624 Acife_1624 Acife_1624 1623941 1624864 - extracellular solute-binding protein family 1 PFAM: Bacterial extracellular solute-binding%2C family 1~KEGG: afr:AFE_1498 ABC transporter%2C periplasmic substrate-binding protein%2C putative gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1624 Acife_1625 Acife_1625 Acife_1625 1625073 1626770 + AAA ATPase central domain protein KEGG: afe:Lferr_1217 AAA ATPase central domain-containing protein~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1625 Acife_1626 Acife_1626 Acife_1626 1626814 1627128 + hypothetical protein KEGG: afr:AFE_1500 hypothetical protein gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1626 Acife_1627 Acife_1627 Acife_1627 1627166 1627495 + Rieske (2Fe-2S) iron-sulfur domain-containing protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: mca:MCA0225 Rieske 2Fe-2S family protein gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1627 Acife_1628 Acife_1628 Acife_1628 1627522 1627755 - hypothetical protein KEGG: azc:AZC_3432 hypothetical protein gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1628 Acife_1629 Acife_1629 Acife_1629 1627815 1628045 - regulatory protein%2C FmdB family KEGG: afr:AFE_1501 hypothetical protein~TIGRFAM: Regulatory protein%2C FmdB%2C putative~PFAM: Regulatory protein%2C FmdB%2C putative gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1629 Acife_1630 Acife_1630 Acife_1630 1628114 1628896 - Rhodanese-like protein KEGG: afr:AFE_1502 ankyrin repeat protein/rhodanese-like domain protein~PFAM: Rhodanese-like%3B Ankyrin repeat~SMART: Rhodanese-like%3B Ankyrin repeat gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1630 Acife_1631 Acife_1631 Acife_1631 1628868 1630508 - nitroreductase PFAM: Nitroreductase-like~KEGG: afr:AFE_1503 nitroreductase%2C putative gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1631 Acife_1632 Acife_1632 Acife_1632 1630573 1630905 - Nitrogenase-stabilizing/protective protein nifW KEGG: afr:AFE_1504 NifW protein%2C putative~HAMAP: Nitrogenase-stabilizing/protective protein nifW~PFAM: Nitrogen fixation protein NifW gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1632 Acife_1633 Acife_1633 Acife_1633 1630910 1631719 - serine O-acetyltransferase KEGG: afr:AFE_1505 serine O-acetyltransferase~TIGRFAM: Serine O-acetyltransferase~PFAM: Bacterial transferase hexapeptide repeat gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1633 Acife_1634 Acife_1634 Acife_1634 1631735 1632895 - homocitrate synthase KEGG: afr:AFE_1506 homocitrate synthase~TIGRFAM: Homocitrate synthase NifV-type~PFAM: Pyruvate carboxyltransferase gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1634 Acife_1635 Acife_1635 Acife_1635 1632888 1634096 - cysteine desulfurase NifS KEGG: afr:AFE_1507 cysteine desulfurase~TIGRFAM: Cysteine desulfurase%2C NifS%2C bacterial/archaeal~PFAM: Aminotransferase%2C class V/Cysteine desulfurase gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1635 Acife_1636 Acife_1636 Acife_1636 1634099 1634974 - Fe-S cluster assembly protein NifU KEGG: afr:AFE_1508 nitrogen fixation protein NifU~TIGRFAM: NIF system FeS cluster assembly%2C NifU~PFAM: NIF system FeS cluster assembly%2C NifU%2C N-terminal%3B BFD-like [2Fe-2S]-binding region%3B NIF system FeS cluster assembly%2C NifU%2C C-terminal gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1636 Acife_1637 Acife_1637 Acife_1637 1634979 1635347 - iron-sulfur cluster assembly accessory protein KEGG: afr:AFE_1509 iron-sulfur cluster assembly accessory protein~TIGRFAM: FeS cluster insertion~PFAM: FeS cluster biogenesis gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1637 Acife_1638 Acife_1638 Acife_1638 1635605 1636198 - hypothetical protein KEGG: afr:AFE_1510 hypothetical protein gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1638 Acife_1639 Acife_1639 Acife_1639 1636229 1636882 - NifQ family protein PFAM: NifQ~KEGG: afr:AFE_1511 nitrogen fixation protein NifQ gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1639 Acife_1640 Acife_1640 Acife_1640 1636913 1637221 - ferredoxin III%2C nif-specific KEGG: afr:AFE_1512 ferredoxin~TIGRFAM: Ferredoxin III 4[4Fe-4S]%2C nif-specific~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1640 Acife_1641 Acife_1641 Acife_1641 1637226 1637489 - protein of unknown function DUF683 PFAM: Uncharacterised protein family UPF0437~KEGG: afr:AFE_1513 hypothetical protein gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1641 Acife_1642 Acife_1642 Acife_1642 1637547 1638011 - nitrogen fixation protein KEGG: afr:AFE_1514 hypothetical protein~TIGRFAM: Uncharacterised protein family UPF0460~PFAM: Uncharacterised protein family UPF0460 gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1642 Acife_1643 Acife_1643 Acife_1643 1638004 1638420 - nitrogen fixation protein NifX KEGG: afr:AFE_1515 nitrogen fixation protein NifX~TIGRFAM: Nitrogen fixation protein NifX~PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1643 Acife_1644 Acife_1644 Acife_1644 1638473 1639834 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifN KEGG: afr:AFE_1516 nitrogenase molybdenum-cofactor biosynthesis protein NifN~TIGRFAM: Nitrogenase molybdenum-iron cofactor biosynthesis protein~PFAM: Nitrogenase/oxidoreductase%2C component 1 gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1644 Acife_1645 Acife_1645 Acife_1645 1639831 1641222 - nitrogenase MoFe cofactor biosynthesis protein NifE KEGG: afr:AFE_1517 nitrogenase molybdenum-cofactor biosynthesis protein NifE~TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE~PFAM: Nitrogenase/oxidoreductase%2C component 1 gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1645 Acife_1646 Acife_1646 Acife_1646 1641241 1641585 - ferredoxin PFAM: Ferredoxin~KEGG: afr:AFE_1518 ferredoxin%2C putative gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1646 Acife_1647 Acife_1647 Acife_1647 1641610 1641954 - ferredoxin PFAM: Ferredoxin~KEGG: afr:AFE_1519 ferredoxin gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1647 Acife_1648 Acife_1648 Acife_1648 1642022 1643581 - nitrogenase molybdenum-iron protein beta chain KEGG: afr:AFE_1520 nitrogenase molybdenum-iron protein%2C beta subunit~TIGRFAM: Nitrogenase molybdenum-iron protein beta chain~PFAM: Nitrogenase/oxidoreductase%2C component 1 gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1648 Acife_1649 Acife_1649 Acife_1649 1643660 1645135 - nitrogenase molybdenum-iron protein alpha chain KEGG: afr:AFE_1521 nitrogenase molybdenum-iron protein%2C alpha subunit~TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain%3B Nitrogenase component 1%2C alpha chain~PFAM: Nitrogenase/oxidoreductase%2C component 1 gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1649 Acife_1650 Acife_1650 Acife_1650 1645200 1646087 - Nitrogenase iron protein TIGRFAM: Nitrogenase iron protein NifH~HAMAP: Nitrogenase iron protein NifH~KEGG: afr:AFE_1522 nitrogenase reductase~PFAM: Nitrogenase iron protein%2C subunit NifH/Protochlorophyllide reductase%2C subunit ChlL gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1650 Acife_1651 Acife_1651 Acife_1651 1646548 1646934 + response regulator KEGG: afr:AFE_1523 response regulator gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1651 Acife_1652 Acife_1652 Acife_1652 1646952 1647779 + Dinitrogenase reductase ADP-ribosyltransferase PFAM: Dinitrogenase reductase ADP-ribosyltransferase~KEGG: afr:AFE_1524 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1652 Acife_1653 Acife_1653 Acife_1653 1647789 1649177 + ADP-ribosyl-(dinitrogen reductase) hydrolase KEGG: afr:AFE_1525 ADP-ribosyl-[dinitrogen reductase] hydrolase~TIGRFAM: ADP-ribosyl-dinitrogen reductase hydrolase%3B Nitrogenase-associated protein~PFAM: ADP-ribosylation/Crystallin J1%3B Arsenate reductase-like gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1653 Acife_1654 Acife_1654 Acife_1654 1649203 1650840 + transcriptional regulator%2C NifA%2C Fis Family TIGRFAM: Nif-specific regulatory protein~PFAM: RNA polymerase sigma factor 54%2C interaction%3B GAF%3B Helix-turn-helix%2C Fis-type~KEGG: afr:AFE_1527 Nif-specific regulatory protein~SMART: GAF%3B ATPase%2C AAA+ type%2C core gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1654 Acife_1655 Acife_1655 Acife_1655 1651104 1652672 + nitrogenase cofactor biosynthesis protein NifB KEGG: afe:Lferr_1245 nitrogenase cofactor biosynthesis protein NifB~TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB~PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis%3B Radical SAM gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1655 Acife_1656 Acife_1656 Acife_1656 1652723 1652941 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~KEGG: afr:AFE_1530 ferredoxin gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1656 Acife_1657 Acife_1657 Acife_1657 1652951 1653286 + iron-sulfur cluster assembly accessory protein KEGG: afr:AFE_1531 iron-sulfur cluster assembly accessory protein~TIGRFAM: FeS cluster insertion~PFAM: FeS cluster biogenesis gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1657 Acife_1658 Acife_1658 Acife_1658 1653327 1653557 + hypothetical protein KEGG: afr:AFE_1532 hypothetical protein gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1658 Acife_1659 Acife_1659 Acife_1659 1653554 1654066 + hypothetical protein KEGG: afr:AFE_1533 hypothetical protein gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1659 Acife_1660 Acife_1660 Acife_1660 1654059 1654850 + LRV FeS4 cluster domain protein PFAM: LRV FeS4 cluster%3B Leucine rich repeat variant~KEGG: afr:AFE_1534 leucine rich repeat protein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1660 Acife_1661 Acife_1661 Acife_1661 1654838 1655140 + NifZ family protein PFAM: NifZ~KEGG: afe:Lferr_1251 NifZ family protein gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1661 Acife_1662 Acife_1662 Acife_1662 1655137 1655391 + NifZ family protein PFAM: NifZ~KEGG: afe:Lferr_1252 NifZ family protein gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1662 Acife_1663 Acife_1663 Acife_1663 1655388 1656572 + aminotransferase class V PFAM: Aminotransferase%2C class V/Cysteine desulfurase~KEGG: afr:AFE_1537 cysteine desulfurase gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1663 Acife_1664 Acife_1664 Acife_1664 1656585 1656794 + nitrogen fixation protein FixT KEGG: afr:AFE_1538 nitrogen fixation protein%2C putative~TIGRFAM: NifT/FixU~PFAM: NifT/FixU gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1664 Acife_1665 Acife_1665 Acife_1665 1656799 1657071 + hypothetical protein KEGG: afr:AFE_1539 hypothetical protein gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1665 Acife_1666 Acife_1666 Acife_1666 1657068 1658210 + DegT/DnrJ/EryC1/StrS aminotransferase PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~KEGG: afr:AFE_1540 aminotransferase%2C DegT/DnrJ/EryC1/StrS family gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1666 Acife_1667 Acife_1667 Acife_1667 1658252 1658557 + ferredoxin PFAM: Ferredoxin~KEGG: afr:AFE_1541 ferredoxin%2C putative gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1667 Acife_1668 Acife_1668 Acife_1668 1658568 1658792 + hypothetical protein KEGG: afr:AFE_1542 hypothetical protein gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1668 Acife_1669 Acife_1669 Acife_1669 1658805 1659632 + hypothetical protein KEGG: afr:AFE_1543 hypothetical protein gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1669 Acife_1670 Acife_1670 Acife_1670 1659649 1660098 + transcriptional regulator%2C BadM/Rrf2 family KEGG: afr:AFE_3240 Rrf2 family protein~TIGRFAM: Transcriptional regulator%2C Rrf2~PFAM: Transcriptional regulator%2C Rrf2 gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1670 Acife_1671 Acife_1671 Acife_1671 1660151 1661005 - modD protein KEGG: afe:Lferr_1260 ModD protein~TIGRFAM: Putative molybdenum utilization protein ModD~PFAM: Quinolinate phosphoribosyl transferase gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1671 Acife_1672 Acife_1672 Acife_1672 1661030 1662496 - Aldehyde Dehydrogenase PFAM: Aldehyde dehydrogenase~KEGG: afr:AFE_1546 succinate-semialdehyde dehydrogenase%2C putative gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1672 Acife_1673 Acife_1673 Acife_1673 1662689 1663078 + globin PFAM: Globin%2C truncated bacterial-like~KEGG: afr:AFE_1548 heme-binding protein%2C putative gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1673 Acife_1674 Acife_1674 Acife_1674 1663075 1664496 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_1547 hypothetical protein gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1674 Acife_1675 Acife_1675 Acife_1675 1664713 1665282 + MscS Mechanosensitive ion channel PFAM: Mechanosensitive ion channel MscS~KEGG: afr:AFE_1549 hypothetical protein gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1675 Acife_1676 Acife_1676 Acife_1676 1665279 1666181 + PfkB domain protein PFAM: Carbohydrate/purine kinase~KEGG: afr:AFE_1550 carbohydrate kinase%2C PfkB family gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1676 Acife_1677 Acife_1677 Acife_1677 1666183 1668315 + sucrose-phosphate synthase TIGRFAM: Sucrose-phosphate synthase%2C glycosyltransferase region%3B HAD-superfamily hydrolase%2C subfamily IIB%3B Sucrose phosphate synthase%2C sucrose phosphatase-like region~KEGG: afr:AFE_1551 sucrose phosphate synthase~PFAM: Sucrose-6F-phosphate phosphohydrolase%2C plant/cyanobacteria%3B Glycosyl transferase%2C group 1 gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1677 Acife_1678 Acife_1678 Acife_1678 1668320 1670701 + sucrose synthase PFAM: Sucrose synthase%3B Glycosyl transferase%2C group 1~KEGG: afr:AFE_1552 sucrose synthase%2C putative gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1678 Acife_1679 Acife_1679 Acife_1679 1670696 1671202 - RES domain protein PFAM: RES~KEGG: acm:AciX9_3442 RES domain protein gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1679 Acife_1680 Acife_1680 Acife_1680 1671166 1671606 - Conserved hypothetical protein CHP02293 KEGG: acm:AciX9_3443 hypothetical protein~TIGRFAM: Conserved hypothetical protein CHP02293~PFAM: Conserved hypothetical protein CHP02293 gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1680 Acife_1681 Acife_1681 Acife_1681 1671769 1673247 + DNA repair protein and transcriptional regulator%2C AraC family KEGG: afr:AFE_2799 transcriptional regulator%2C Ada family/DNA-3-methyladenine glycosylase II~PFAM: AlkA%2C N-terminal%3B Ada DNA repair%2C metal-binding%3B Helix-turn-helix%2C AraC type%3B HhH-GPD domain~SMART: Helix-turn-helix%2C AraC domain%3B HhH-GPD domain gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1681 Acife_1682 Acife_1682 Acife_1682 1673244 1673768 - methylated-DNA/protein-cysteine methyltransferase KEGG: afr:AFE_1553 methylated-DNA--protein-cysteine methyltransferase~TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding~PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase%2C DNA binding gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1682 Acife_1683 Acife_1683 Acife_1683 1674039 1674272 + hypothetical protein KEGG: rlg:Rleg_5863 hypothetical protein gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1683 Acife_1684 Acife_1684 Acife_1684 1674272 1674700 + PIN domain protein family protein TIGRFAM: Conserved hyprothetical protein CHP00028~KEGG: bvi:Bcep1808_6071 PilT domain-containing protein gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1684 Acife_1685 Acife_1685 Acife_1685 1674984 1675469 - transcriptional regulator%2C AsnC family KEGG: afr:AFE_1990 transcriptional regulator%2C AsnC family~PFAM: Transcription regulator%2C AsnC-type%2C C-terminal~SMART: Transcription regulator%2C AsnC-type gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1685 Acife_1686 Acife_1686 Acife_1686 1675611 1677314 + pyruvate carboxyltransferase PFAM: Pyruvate carboxyltransferase%3B 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain~KEGG: afr:AFE_1989 2-isopropylmalate synthase gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1686 Acife_1687 Acife_1687 Acife_1687 1677318 1678139 - hypothetical protein KEGG: afe:Lferr_0177 hypothetical protein gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1687 Acife_1688 Acife_1688 Acife_1688 1678361 1679188 - hypothetical protein manually curated gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1688 Acife_1689 Acife_1689 Acife_1689 1679196 1679396 - hypothetical protein gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1689 Acife_1690 Acife_1690 Acife_1690 1679467 1681950 - ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC KEGG: afr:AFE_1988 cation-transporting P-type ATPase%2C putative~TIGRFAM: ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B ATPase%2C P-type cation-transporter%2C N-terminal%3B Haloacid dehalogenase-like hydrolase%3B ATPase%2C P-type cation-transporter%2C C-terminal gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1690 Acife_1691 Acife_1691 Acife_1691 1681982 1682749 - UDP-2%2C3-diacylglucosamine hydrolase TIGRFAM: UDP-2%2C3-diacylglucosamine hydrolase~HAMAP: UDP-2%2C3-diacylglucosamine hydrolase~KEGG: afr:AFE_1987 UDP-2%2C3-diacylglucosamine hydrolase~PFAM: Metallophosphoesterase gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1691 Acife_1692 Acife_1692 Acife_1692 1682760 1683272 - peptidyl-prolyl cis-trans isomerase cyclophilin type PFAM: Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type~KEGG: afr:AFE_1986 peptidyl-prolyl cis-trans isomerase B gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1692 Acife_1693 Acife_1693 Acife_1693 1683460 1685079 - amino acid permease-associated region PFAM: Amino acid permease-associated region~KEGG: afr:AFE_1782 amino acid permease family protein gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1693 Acife_1694 Acife_1694 Acife_1694 1685780 1686235 + hypothetical protein KEGG: afr:AFE_1982 hypothetical protein gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1694 Acife_1695 Acife_1695 Acife_1695 1686362 1687702 - Exodeoxyribonuclease 7 large subunit TIGRFAM: Exonuclease VII%2C large subunit~HAMAP: Exodeoxyribonuclease 7 large subunit~KEGG: afr:AFE_1980 exodeoxyribonuclease VII%2C large subunit~PFAM: Exonuclease VII%2C large subunit%2C C-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1695 Acife_1696 Acife_1696 Acife_1696 1687862 1688236 + thioredoxin KEGG: afr:AFE_1979 thioredoxin~TIGRFAM: Thioredoxin~PFAM: Thioredoxin domain gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1696 Acife_1697 Acife_1697 Acife_1697 1688324 1689154 - TonB family protein TIGRFAM: TonB%2C C-terminal~KEGG: afr:AFE_1978 TonB family protein gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1697 Acife_1698 Acife_1698 Acife_1698 1689269 1690486 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_1977 fosmidomycin resistance protein%2C putative gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1698 Acife_1699 Acife_1699 Acife_1699 1690617 1690865 + Exodeoxyribonuclease 7 small subunit TIGRFAM: Exonuclease VII%2C small subunit~HAMAP: Exonuclease VII%2C small subunit~KEGG: afr:AFE_1976 exodeoxyribonuclease VII%2C small subunit~PFAM: Exonuclease VII%2C small subunit gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1699 Acife_1700 Acife_1700 Acife_1700 1690862 1691782 + Polyprenyl synthetase PFAM: Polyprenyl synthetase~KEGG: afr:AFE_1975 geranyltranstransferase gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1700 Acife_1701 Acife_1701 Acife_1701 1691779 1693653 + 1-deoxy-D-xylulose-5-phosphate synthase TIGRFAM: Deoxyxylulose-5-phosphate synthase~HAMAP: Deoxyxylulose-5-phosphate synthase~KEGG: afr:AFE_1974 1-deoxy-D-xylulose-5-phosphate synthase~PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1701 Acife_1702 Acife_1702 Acife_1702 1693696 1694490 + protein of unknown function DUF198 PFAM: Protein of unknown function DUF198~KEGG: afr:AFE_1973 conserved hypothetical protein TIGR00294 gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1702 Acife_1703 Acife_1703 Acife_1703 1694494 1695585 + chorismate synthase KEGG: afr:AFE_1972 chorismate synthase~TIGRFAM: Chorismate synthase~PFAM: Chorismate synthase gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1703 Acife_1704 Acife_1704 Acife_1704 1695589 1696752 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_1971 transporter%2C putative gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1704 Acife_1705 Acife_1705 Acife_1705 1696793 1699393 + ATP-dependent chaperone ClpB TIGRFAM: Chaperonin ClpB~PFAM: ATPase associated with various cellular activities%2C AAA-2%3B Clp%2C N-terminal%3B ATPase%2C AAA-type%2C core%3B Clp ATPase%2C C-terminal~KEGG: afr:AFE_1970 ClpB protein~SMART: ATPase%2C AAA+ type%2C core gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1705 Acife_1706 Acife_1706 Acife_1706 1699401 1700582 - glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: afr:AFE_1427 glycosyl transferase%2C group 1 family protein gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1706 Acife_1707 Acife_1707 Acife_1707 1700699 1702666 - Acetyl-coenzyme A synthetase TIGRFAM: Acetate--CoA ligase~HAMAP: Acetyl-coenzyme A synthetase~KEGG: afr:AFE_1969 acetyl-CoA synthetase~PFAM: AMP-dependent synthetase/ligase gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1707 Acife_1708 Acife_1708 Acife_1708 1702763 1704748 - sodium/hydrogen exchanger PFAM: Cation/H+ exchanger%3B Regulator of K+ conductance%2C N-terminal%3B Regulator of K+ conductance%2C C-terminal~KEGG: afr:AFE_1968 potassium-efflux system protein gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1708 Acife_1709 Acife_1709 Acife_1709 1704906 1705895 + ADP-L-glycero-D-manno-heptose-6-epimerase TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase~HAMAP: ADP-L-glycero-D-manno-heptose-6-epimerase~KEGG: afr:AFE_1967 ADP-L-glycero-D-mannoheptose-6-epimerase~PFAM: NAD-dependent epimerase/dehydratase gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1709 Acife_1710 Acife_1710 Acife_1710 1705895 1706896 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: afr:AFE_1966 NAD-dependent epimerase/dehydratase family protein gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1710 Acife_1711 Acife_1711 Acife_1711 1706889 1707308 + hypothetical protein KEGG: afr:AFE_1965 hypothetical protein gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1711 Acife_1712 Acife_1712 Acife_1712 1707317 1708438 - fatty acid desaturase PFAM: Fatty acid desaturase%2C type 1~KEGG: afr:AFE_1964 fatty acid desaturase gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1712 Acife_1713 Acife_1713 Acife_1713 1708549 1709265 - protein of unknown function DUF125 transmembrane PFAM: Protein of unknown function DUF125%2C transmembrane~KEGG: afr:AFE_0153 integral membrane protein gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1713 Acife_1714 Acife_1714 Acife_1714 1709282 1709902 - hypothetical protein KEGG: afr:AFE_2246 DsbG domain protein gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1714 Acife_1715 Acife_1715 Acife_1715 1710322 1710567 + hypothetical protein gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1715 Acife_1716 Acife_1716 Acife_1716 1710781 1711025 + pseudogene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1716 Acife_1717 Acife_1717 Acife_1717 1711026 1711505 + hypothetical protein manually curated gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1717 Acife_1718 Acife_1718 Acife_1718 1711936 1712505 + rusticyanin KEGG: afr:AFE_3146 rusticyanin~TIGRFAM: Rusticyanin~PFAM: Blue (type 1) copper domain gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1718 Acife_1719 Acife_1719 Acife_1719 1712607 1712939 + hypothetical protein manually curated~KEGG: afr:AFE_0803 hypothetical protein gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1719 Acife_1720 Acife_1720 Acife_1720 1712945 1714144 + DNA polymerase IV KEGG: afr:AFE_2654 DNA polymerase IV~HAMAP: DNA polymerase IV~PFAM: DNA-repair protein%2C UmuC-like gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1720 Acife_1721 Acife_1721 Acife_1721 1714259 1714498 + SpoVT/AbrB like domain protein KEGG: afr:AFE_2771 SpoVT/AbrB like domain protein gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1721 Acife_1722 Acife_1722 Acife_1722 1714495 1714905 + PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: afr:AFE_2655 PIN domain protein gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1722 Acife_1723 Acife_1723 Acife_1723 1715004 1715615 - hypothetical protein gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1723 Acife_1724 Acife_1724 Acife_1724 1715796 1715939 + hypothetical protein gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1724 Acife_1725 Acife_1725 Acife_1725 1716006 1716755 + hypothetical protein gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1725 Acife_1726 Acife_1726 Acife_1726 1717071 1717511 + Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: noc:Noc_0566 glyoxalase/bleomycin resistance protein/dioxygenase gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1726 Acife_1727 Acife_1727 Acife_1727 1717654 1717941 + hypothetical protein KEGG: nhl:Nhal_1040 restriction modification system DNA specificity domain protein gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1727 Acife_1728 Acife_1728 Acife_1728 1717938 1718405 + TspO and MBR like protein PFAM: TspO/MBR-related protein~KEGG: hna:Hneap_0210 TspO and MBR like protein gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1728 Acife_1729 Acife_1729 Acife_1729 1718427 1718678 + FMN-binding pyridoxamine 5'-phosphate oxidase-related protein PFAM: Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain~KEGG: afe:Lferr_0929 pyridoxamine 5'-phosphate oxidase-like protein gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1729 Acife_1730 Acife_1730 Acife_1730 1718662 1719237 + hypothetical protein KEGG: mpl:Mpal_2429 membrane protein-like protein gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1730 Acife_1731 Acife_1731 Acife_1731 1719298 1719879 + hypothetical protein KEGG: afr:AFE_0919 hypothetical protein gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1731 Acife_1732 Acife_1732 Acife_1732 1719852 1720463 + phosphoesterase PA-phosphatase related protein KEGG: afr:AFE_0918 PAP2 family protein~PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase~SMART: Phosphatidic acid phosphatase type 2/haloperoxidase gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1732 Acife_1733 Acife_1733 Acife_1733 1720556 1720894 + hypothetical protein gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1733 Acife_1734 Acife_1734 Acife_1734 1720891 1721472 + hypothetical protein KEGG: pol:Bpro_5386 hypothetical protein gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1734 Acife_1735 Acife_1735 Acife_1735 1721501 1721830 + hypothetical protein gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1735 Acife_1736 Acife_1736 Acife_1736 1722136 1723116 - hypothetical protein KEGG: rpc:RPC_0124 hypothetical protein gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1736 Acife_1737 Acife_1737 Acife_1737 1723421 1724713 - hypothetical protein KEGG: sjp:SJA_C1-26360 hypothetical protein gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1737 Acife_1738 Acife_1738 Acife_1738 1725156 1725674 - pseudogene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1738 Acife_1739 Acife_1739 Acife_1739 1725667 1726149 - pseudogene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1739 Acife_1740 Acife_1740 Acife_1740 1726593 1727018 - ferric uptake regulator%2C Fur family PFAM: Ferric-uptake regulator~KEGG: afe:Lferr_1623 Fur family ferric uptake regulator gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1740 Acife_1741 Acife_1741 Acife_1741 1727085 1728176 - FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: afr:AFE_1956 oxidoreductase%2C FAD-binding gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1741 Acife_1742 Acife_1742 Acife_1742 1728194 1731751 - protein of unknown function DUF490 PFAM: Protein of unknown function DUF490~KEGG: afr:AFE_1957 hypothetical protein gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1742 Acife_1743 Acife_1743 Acife_1743 1731748 1733505 - surface antigen (D15) PFAM: Bacterial surface antigen (D15)%3B Surface antigen variable number~KEGG: afe:Lferr_1626 surface antigen (D15) gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1743 Acife_1744 Acife_1744 Acife_1744 1733766 1734029 - hypothetical protein KEGG: afr:AFE_1959 hypothetical protein gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1744 Acife_1745 Acife_1745 Acife_1745 1734340 1735572 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_1961 AmpG permease protein%2C putative gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1745 Acife_1746 Acife_1746 Acife_1746 1735734 1735940 - pseudogene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1746 Acife_1747 Acife_1747 Acife_1747 1736005 1736250 - hypothetical protein KEGG: afe:Lferr_1631 hypothetical protein gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1747 Acife_1748 Acife_1748 Acife_1748 1736667 1737110 - hypothetical protein KEGG: afr:AFE_0099 hypothetical protein gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1748 Acife_1749 Acife_1749 Acife_1749 1737201 1737998 - phosphoesterase PA-phosphatase related protein KEGG: afr:AFE_0537 PAP2 family protein~PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase~SMART: Phosphatidic acid phosphatase type 2/haloperoxidase gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1749 Acife_1750 Acife_1750 Acife_1750 1738094 1739344 - major facilitator superfamily MFS_1 KEGG: bpy:Bphyt_0287 major facilitator superfamily MFS_1~manually curated~PFAM: Major facilitator superfamily MFS-1 gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1750 Acife_1751 Acife_1751 Acife_1751 1740061 1740903 - Hsp33 protein PFAM: Heat shock protein Hsp33 protein~KEGG: afr:AFE_1408 33 kDa chaperonin gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1751 Acife_1752 Acife_1752 Acife_1752 1740896 1741666 - PP-loop domain protein PFAM: PP-loop~KEGG: afr:AFE_1407 PP-loop family protein gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1752 Acife_1753 Acife_1753 Acife_1753 1741668 1742639 - rfaE bifunctional protein KEGG: afr:AFE_1406 kinase%2C PfkB family~TIGRFAM: RfaE bifunctional protein%2C domain I~PFAM: Carbohydrate/purine kinase gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1753 Acife_1754 Acife_1754 Acife_1754 1742620 1743942 - nucleotide sugar dehydrogenase KEGG: afr:AFE_1405 UDP-glucose 6-dehydrogenase~TIGRFAM: Nucleotide sugar dehydrogenase~PFAM: UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal%3B UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation%3B UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1754 Acife_1755 Acife_1755 Acife_1755 1743946 1744335 - Holo-(acyl-carrier-protein) synthase TIGRFAM: Holo-[acyl carrier protein] synthase%3B Phosphopantethiene-protein transferase~HAMAP: Holo-[acyl-carrier-protein] synthase~KEGG: afr:AFE_1404 holo-(acyl-carrier-protein) synthase~PFAM: 4'-phosphopantetheinyl transferase gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1755 Acife_1756 Acife_1756 Acife_1756 1744332 1745057 - Pyridoxine 5'-phosphate synthase TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ~HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ~KEGG: afr:AFE_1403 pyridoxine 5'-phosphate synthase~PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1756 Acife_1757 Acife_1757 Acife_1757 1745054 1745824 - DNA repair protein recO TIGRFAM: Recombination protein O%2C RecO~HAMAP: DNA repair protein recO~KEGG: afr:AFE_1402 DNA repair protein RecO%2C putative~PFAM: Recombination protein O%2C RecO gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1757 Acife_1758 Acife_1758 Acife_1758 1745814 1746728 - GTP-binding protein Era-like-protein TIGRFAM: GTP-binding protein Era%3B Small GTP-binding protein~HAMAP: GTP-binding protein Era~KEGG: afr:AFE_1401 GTP-binding protein Era~PFAM: GTP-binding protein%2C HSR1-related%3B K Homology%2C type 2 gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1758 Acife_1759 Acife_1759 Acife_1759 1746721 1747401 - Ribonuclease 3 SMART: Ribonuclease III%3B Double-stranded RNA binding~TIGRFAM: Ribonuclease III%2C bacterial~KEGG: afr:AFE_1400 ribonuclease III~HAMAP: Ribonuclease III%2C bacterial~PFAM: Ribonuclease III%3B Double-stranded RNA binding gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1759 Acife_1760 Acife_1760 Acife_1760 1747466 1747900 - hypothetical protein KEGG: afr:AFE_1399 hypothetical protein gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1760 Acife_1761 Acife_1761 Acife_1761 1747988 1748779 - signal peptidase I KEGG: afr:AFE_1398 signal peptidase I~TIGRFAM: Peptidase S26A%2C signal peptidase I~PFAM: Peptidase S24/S26A/S26B%2C conserved region gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1761 Acife_1762 Acife_1762 Acife_1762 1748846 1750648 - GTP-binding protein lepA TIGRFAM: GTP-binding protein LepA%3B Small GTP-binding protein~HAMAP: GTP-binding protein lepA~KEGG: afr:AFE_1397 GTP-binding protein LepA~PFAM: GTP-binding protein LepA%2C C-terminal%3B Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C C-terminal gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1762 Acife_1763 Acife_1763 Acife_1763 1750754 1752238 - protease Do TIGRFAM: Peptidase S1C%2C Do~PFAM: Peptidase S1/S6%2C chymotrypsin/Hap%3B PDZ/DHR/GLGF~KEGG: afe:Lferr_1117 protease Do~SMART: PDZ/DHR/GLGF gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1763 Acife_1764 Acife_1764 Acife_1764 1752374 1753039 - hypothetical protein KEGG: afr:AFE_1395 hypothetical protein gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1764 Acife_1765 Acife_1765 Acife_1765 1753036 1753662 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily KEGG: afr:AFE_1394 RNA polymerase sigma-E factor~TIGRFAM: RNA polymerase sigma-70 RpoE type%3B RNA polymerase sigma-70~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma factor 70%2C region 4 type 2 gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1765 Acife_1766 Acife_1766 Acife_1766 1753778 1755367 + L-aspartate oxidase KEGG: afr:AFE_1392 L-aspartate oxidase~TIGRFAM: L-aspartate oxidase~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal%3B Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1766 Acife_1767 Acife_1767 Acife_1767 1755312 1755809 - hypothetical protein KEGG: afr:AFE_1393 hypothetical protein gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1767 Acife_1768 Acife_1768 Acife_1768 1755826 1756791 + folate-binding protein YgfZ KEGG: afr:AFE_1391 folate-binding protein YgfZ~TIGRFAM: Folate-binding%2C YgfZ~PFAM: Glycine cleavage T-protein%2C N-terminal gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1768 Acife_1769 Acife_1769 Acife_1769 1756795 1757145 + hypothetical protein KEGG: afr:AFE_1389 hypothetical protein gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1769 Acife_1770 Acife_1770 Acife_1770 1757197 1758336 - FIST C domain-containing protein PFAM: FIST C domain%3B FIST domain%2C N-terminal~KEGG: afr:AFE_1387 hypothetical protein gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1770 Acife_1771 Acife_1771 Acife_1771 1758639 1759397 - metallo-beta-lactamase family protein KEGG: afr:AFE_0993 metallo-beta-lactamase family protein gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1771 Acife_1772 Acife_1772 Acife_1772 1759394 1760167 - hydrolase%2C TatD family KEGG: afr:AFE_0992 hydrolase%2C TatD family~TIGRFAM: Deoxyribonuclease%2C TatD Mg-dependent%2C prokaryote~PFAM: Deoxyribonuclease%2C TatD-related gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1772 Acife_1773 Acife_1773 Acife_1773 1760191 1760958 - RNA methyltransferase%2C TrmH family%2C group 3 KEGG: afr:AFE_0991 tRNA (guanosine-2'-O-)-methyltransferase%2C putative~TIGRFAM: RNA methyltransferase TrmH%2C group 3~PFAM: tRNA/rRNA methyltransferase%2C SpoU%3B RNA 2-O ribose methyltransferase%2C substrate binding gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1773 Acife_1774 Acife_1774 Acife_1774 1760951 1761418 - hypothetical protein KEGG: afe:Lferr_1104 hypothetical protein gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1774 Acife_1775 Acife_1775 Acife_1775 1761472 1761897 - hypothetical protein KEGG: afe:Lferr_1103 hypothetical protein gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1775 Acife_1776 Acife_1776 Acife_1776 1761988 1762983 - protein of unknown function UPF0118 PFAM: Uncharacterised protein family UPF0118~KEGG: afr:AFE_0988 hypothetical protein gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1776 Acife_1777 Acife_1777 Acife_1777 1763130 1763990 - PHP domain protein KEGG: afr:AFE_0987 hypothetical protein~PFAM: PHP%2C C-terminal~SMART: Polymerase/histidinol phosphatase%2C N-terminal gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1777 Acife_1778 Acife_1778 Acife_1778 1764094 1764819 + hypothetical protein KEGG: afr:AFE_0986 hypothetical protein gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1778 Acife_1779 Acife_1779 Acife_1779 1764914 1765516 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Peroxiredoxin%2C C-terminal~KEGG: afr:AFE_0985 antioxidant%2C AhpC/Tsa family gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1779 Acife_1780 Acife_1780 Acife_1780 1765730 1766053 + 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~KEGG: afr:AFE_0984 ferredoxin gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1780 Acife_1781 Acife_1781 Acife_1781 1766050 1767738 + ABC transporter related protein KEGG: afr:AFE_0983 ABC transporter%2C ATP-binding protein%2C MsbA family~PFAM: ABC transporter-like%3B ABC transporter%2C transmembrane region~SMART: ATPase%2C AAA+ type%2C core gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1781 Acife_1782 Acife_1782 Acife_1782 1767756 1769765 - transglutaminase domain-containing protein KEGG: gca:Galf_1825 hypothetical protein~PFAM: Transglutaminase-like~SMART: Transglutaminase-like gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1782 Acife_1783 Acife_1783 Acife_1783 1769769 1770770 - hypothetical protein KEGG: geb:GM18_1177 hypothetical protein gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1783 Acife_1784 Acife_1784 Acife_1784 1770767 1771675 - ATPase associated with various cellular activities AAA_3 KEGG: pag:PLES_21891 putative MoxR protein~PFAM: ATPase associated with various cellular activities%2C AAA-3~SMART: ATPase%2C AAA+ type%2C core gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1784 Acife_1785 Acife_1785 Acife_1785 1771672 1773102 - Glycine cleavage system P-protein PFAM: Glycine cleavage system P-protein%2C N-terminal~KEGG: afr:AFE_0982 glycine dehydrogenase subunit 2 gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1785 Acife_1786 Acife_1786 Acife_1786 1773099 1774442 - Glycine cleavage system P-protein PFAM: Glycine cleavage system P-protein%2C N-terminal~KEGG: afr:AFE_0981 glycine dehydrogenase subunit 1 gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1786 Acife_1787 Acife_1787 Acife_1787 1774447 1774830 - Glycine cleavage system H protein TIGRFAM: Glycine cleavage H-protein%2C subgroup~HAMAP: Glycine cleavage H-protein~KEGG: afr:AFE_0980 glycine cleavage system H protein~PFAM: Glycine cleavage H-protein gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1787 Acife_1788 Acife_1788 Acife_1788 1774827 1775954 - glycine cleavage system T protein KEGG: afe:Lferr_1093 glycine cleavage system T protein~TIGRFAM: Glycine cleavage system T protein~PFAM: Glycine cleavage T-protein%2C N-terminal%3B Glycine cleavage T-protein%2C C-terminal barrel gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1788 Acife_1789 Acife_1789 Acife_1789 1776043 1776528 - UPF0234 protein yajQ KEGG: afr:AFE_0977 hypothetical protein~HAMAP: UPF0234 protein yajQ~PFAM: Protein of unknown function DUF520 gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1789 Acife_1790 Acife_1790 Acife_1790 1776540 1777025 - molybdopterin biosynthesis MoaE protein PFAM: Molybdopterin biosynthesis MoaE~KEGG: afr:AFE_0976 molybdopterin converting factor%2C subunit 2 gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1790 Acife_1791 Acife_1791 Acife_1791 1777028 1777270 - thiamineS protein PFAM: ThiamineS~KEGG: afr:AFE_0975 molybdopterin converting factor%2C subunit 1 gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1791 Acife_1792 Acife_1792 Acife_1792 1777377 1778378 + Peptidase S49 domain protein KEGG: afr:AFE_0973 putative periplasmic protease~manually curated~PFAM: Peptidase S49%2C N-terminal proteobacteria%3B Peptidase S49 gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1792 Acife_1793 Acife_1793 Acife_1793 1778537 1778938 - hypothetical protein KEGG: afr:AFE_0965 hypothetical protein gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1793 Acife_1794 Acife_1794 Acife_1794 1778951 1779367 - protein of unknown function DUF423 PFAM: Protein of unknown function DUF423~KEGG: afr:AFE_0964 hypothetical protein gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1794 Acife_1795 Acife_1795 Acife_1795 1779494 1780540 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: afr:AFE_0963 male sterility protein gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1795 Acife_1796 Acife_1796 Acife_1796 1780553 1780969 - Sel1 domain protein repeat-containing protein KEGG: hap:HAPS_0017 Sel1 domain protein%2C repeat-containing protein~PFAM: Sel1-like~SMART: Sel1-like gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1796 Acife_1797 Acife_1797 Acife_1797 1780969 1783062 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: afr:AFE_0962 glucosyltransferase MdoH gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1797 Acife_1798 Acife_1798 Acife_1798 1783065 1783571 - hypothetical protein KEGG: afr:AFE_0961 hypothetical protein gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1798 Acife_1799 Acife_1799 Acife_1799 1783577 1785112 - periplasmic glucan biosynthesis protein MdoG PFAM: Glucan biosynthesis%2C periplasmic%2C MdoG C-terminal~KEGG: afr:AFE_0960 glucan biosynthesis protein D gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1799 Acife_1800 Acife_1800 Acife_1800 1785228 1785473 + hypothetical protein gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1800 Acife_1801 Acife_1801 Acife_1801 1785463 1786932 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation~KEGG: afr:AFE_0958 pyridine nucleotide-disulfide oxidoreductase gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1801 Acife_1802 Acife_1802 Acife_1802 1786954 1787436 - hypothetical protein KEGG: afr:AFE_0949 hypothetical protein gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1802 Acife_1803 Acife_1803 Acife_1803 1787427 1788110 - phospholipase/Carboxylesterase PFAM: Phospholipase/carboxylesterase~KEGG: afe:Lferr_1073 phospholipase/carboxylesterase gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1803 Acife_1804 Acife_1804 Acife_1804 1788094 1789455 - sigma54 specific transcriptional regulator%2C Fis family KEGG: afr:AFE_0957 sigma-54 dependent transcriptional regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Helix-turn-helix%2C Fis-type~SMART: ATPase%2C AAA+ type%2C core gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1804 Acife_1805 Acife_1805 Acife_1805 1789581 1791464 - Phosphomethylpyrimidine synthase TIGRFAM: Thiamine biosynthesis protein ThiC~HAMAP: Thiamine biosynthesis protein ThiC~KEGG: afr:AFE_0948 thiamine biosynthesis protein ThiC~PFAM: Thiamine biosynthesis protein ThiC gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1805 Acife_1806 Acife_1806 Acife_1806 1791676 1794042 - type III restriction protein res subunit PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: type III restriction protein res subunit gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1806 Acife_1807 Acife_1807 Acife_1807 1793984 1794337 - protein of unknown function DUF86 PFAM: Protein of unknown function DUF86~KEGG: nhl:Nhal_0890 protein of unknown function DUF86 gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1807 Acife_1808 Acife_1808 Acife_1808 1794330 1794620 - DNA polymerase beta domain protein region PFAM: Nucleotidyltransferase~KEGG: psa:PST_1417 nucleotidyltransferase family protein gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1808 Acife_1809 Acife_1809 Acife_1809 1794620 1795342 - adenine specific DNA methylase Mod KEGG: neu:NE2309 adenine specific DNA methylase Mod gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1809 Acife_1810 Acife_1810 Acife_1810 1795339 1796175 - KilA%2C /APSES-type HTH DNA-binding domain-containing protein PFAM: KilA%2C N-terminal/APSES-type HTH DNA-binding domain~KEGG: nit:NAL212_1509 KilA%2C/APSES-type HTH DNA-binding domain gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1810 Acife_1811 Acife_1811 Acife_1811 1796220 1796405 - pseudogene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1811 Acife_1812 Acife_1812 Acife_1812 1796581 1798173 + ABC transporter related protein KEGG: afr:AFE_0945 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1812 Acife_1813 Acife_1813 Acife_1813 1798186 1798494 - hypothetical protein KEGG: afr:AFE_0944 hypothetical protein gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1813 Acife_1814 Acife_1814 Acife_1814 1798478 1799929 - phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III%3B Alpha-D-phosphohexomutase%2C C-terminal~KEGG: afr:AFE_0943 phosphomannomutase%2C putative gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1814 Acife_1815 Acife_1815 Acife_1815 1800109 1803447 + SNF2-related protein KEGG: afr:AFE_0942 DNA helicase%2C SNF2/RAD54 family~PFAM: SNF2-related%3B Zinc finger%2C SWIM-type%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1815 Acife_1816 Acife_1816 Acife_1816 1803574 1803768 + hypothetical protein gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1816 Acife_1817 Acife_1817 Acife_1817 1803755 1805731 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: afe:Lferr_1059 lytic transglycosylase catalytic subunit gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1817 Acife_1818 Acife_1818 Acife_1818 1805698 1806912 + (NiFe) hydrogenase%2C beta subunit%2C putative KEGG: afr:AFE_0940 [NiFe] hydrogenase%2C beta subunit%2C putative gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1818 Acife_1819 Acife_1819 Acife_1819 1806905 1807735 + oxidoreductase FAD/NAD(P)-binding domain protein PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Oxidoreductase FAD-binding region%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain~KEGG: afr:AFE_0939 [NiFe] hydrogenase%2C gamma subunit%2C putative gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1819 Acife_1820 Acife_1820 Acife_1820 1807740 1808537 + NADH ubiquinone oxidoreductase 20 kDa subunit PFAM: NADH:ubiquinone oxidoreductase-like%2C 20kDa subunit~KEGG: afr:AFE_0938 [NiFe] hydrogenase%2C delta subunit%2C putative gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1820 Acife_1821 Acife_1821 Acife_1821 1808521 1809819 + nickel-dependent hydrogenase large subunit PFAM: Nickel-dependent hydrogenase%2C large subunit~KEGG: afe:Lferr_1055 nickel-dependent hydrogenase large subunit gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1821 Acife_1822 Acife_1822 Acife_1822 1809816 1810310 + hydrogenase maturation protease KEGG: afr:AFE_0936 hydrogenase maturation protease~TIGRFAM: Peptidase A31%2C hydrogen uptake protein~PFAM: Peptidase A31%2C hydrogen uptake protein gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1822 Acife_1823 Acife_1823 Acife_1823 1810279 1811331 - hydrogenase expression/formation protein HypE KEGG: rme:Rmet_1540 hydrogenase expression/formation protein HypE~TIGRFAM: Hydrogenase expression/formation protein HypE~PFAM: AIR synthase related protein%2C C-terminal%3B AIR synthase related protein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1823 Acife_1824 Acife_1824 Acife_1824 1811331 1812503 - hydrogenase expression/formation protein HypD KEGG: afr:AFE_3290 hydrogenase expression/formation protein HypD~TIGRFAM: Hydrogenase formation HypD protein~PFAM: Hydrogenase formation HypD protein gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1824 Acife_1825 Acife_1825 Acife_1825 1812500 1812745 - hydrogenase assembly chaperone hypC/hupF KEGG: afr:AFE_3289 hydrogenase assembly chaperone HypC~TIGRFAM: Hydrogenase expression/formation protein%2C HupF/HypC~PFAM: Hydrogenase expression/formation protein%2C HupF/HypC gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1825 Acife_1826 Acife_1826 Acife_1826 1812759 1815083 - Acylphosphatase TIGRFAM: Hydrogenase maturation factor%2C HypF-type~HAMAP: Acylphosphatase~KEGG: rme:Rmet_1537 (NiFe) hydrogenase maturation protein HypF~PFAM: Sua5/YciO/YrdC%2C N-terminal%3B Acylphosphatase-like%3B Zinc finger%2C HypF-type gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1826 Acife_1827 Acife_1827 Acife_1827 1815083 1815973 - hydrogenase accessory protein HypB KEGG: afe:Lferr_2886 hydrogenase accessory protein HypB~TIGRFAM: Hydrogenase accessory protein HypB~PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1827 Acife_1828 Acife_1828 Acife_1828 1815970 1816311 - hydrogenase nickel incorporation protein hypA TIGRFAM: Hydrogenase nickel incorporation protein HypA/HybF~HAMAP: Hydrogenase nickel incorporation protein HypA/HybF~KEGG: afr:AFE_3287 hydrogenase nickel insertion protein HypA~PFAM: Hydrogenase nickel incorporation protein HypA/HybF gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1828 Acife_1829 Acife_1829 Acife_1829 1816536 1817132 + hypothetical protein KEGG: afr:AFE_0935 hypothetical protein gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1829 Acife_1830 Acife_1830 Acife_1830 1817129 1819765 - alanyl-tRNA synthetase KEGG: afr:AFE_0934 alanyl-tRNA synthetase~TIGRFAM: Alanyl-tRNA synthetase%2C class IIc~PFAM: Alanyl-tRNA synthetase%2C class IIc%2C N-terminal%3B Threonyl/alanyl tRNA synthetase%2C SAD%3B Phosphoesterase%2C DHHA1 gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1830 Acife_1831 Acife_1831 Acife_1831 1819814 1820272 - Regulatory protein recX KEGG: afr:AFE_0933 regulatory protein RecX~HAMAP: Regulatory protein recX~PFAM: Regulatory protein RecX gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1831 Acife_1832 Acife_1832 Acife_1832 1820273 1821319 - Protein recA SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: DNA recombination and repair protein RecA~KEGG: afr:AFE_0932 RecA protein~HAMAP: DNA recombination and repair protein RecA~PFAM: DNA recombination and repair protein RecA gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1832 Acife_1833 Acife_1833 Acife_1833 1821538 1822386 - CinA domain protein KEGG: afr:AFE_0930 CinA family protein~TIGRFAM: CinA%2C C-terminal~PFAM: CinA%2C C-terminal gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1833 Acife_1834 Acife_1834 Acife_1834 1822383 1822871 - phosphatidylglycerophosphatase A PFAM: Phosphatidylglycerophosphatase A~KEGG: afr:AFE_0929 phosphatidylglycerophosphatase A gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1834 Acife_1835 Acife_1835 Acife_1835 1822861 1823883 - thiamine-monophosphate kinase KEGG: afr:AFE_0928 thiamine-monophosphate kinase~TIGRFAM: Thiamine-monophosphate kinase~PFAM: AIR synthase related protein%3B AIR synthase related protein%2C C-terminal gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1835 Acife_1836 Acife_1836 Acife_1836 1823945 1824820 + glutamyl-queuosine tRNA(Asp) synthetase KEGG: afr:AFE_0927 glutamyl-tRNA synthetase-related protein~TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1836 Acife_1837 Acife_1837 Acife_1837 1824847 1825545 + Sugar fermentation stimulation protein A TIGRFAM: Sugar fermentation stimulation protein~HAMAP: Sugar fermentation stimulation protein~KEGG: afr:AFE_0926 sugar fermentation stimulation protein~PFAM: Sugar fermentation stimulation protein gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1837 Acife_1838 Acife_1838 Acife_1838 1825564 1826373 + methionine aminopeptidase%2C type I KEGG: afr:AFE_0925 methionine aminopeptidase%2C type I~TIGRFAM: Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1~PFAM: Peptidase M24%2C structural domain gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1838 Acife_1839 Acife_1839 Acife_1839 1826376 1828967 + UTP-GlnB uridylyltransferase%2C GlnD SMART: Metal-dependent phosphohydrolase%2C HD region~TIGRFAM: Protein-PII uridylyltransferase~KEGG: afr:AFE_0924 protein-P-II uridylyltransferase~HAMAP: Protein-PII uridylyltransferase~PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase%3B Nucleotidyltransferase%3B Metal-dependent phosphohydrolase%2C HD region%2C subdomain%3B Amino acid-binding ACT gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1839 Acife_1840 Acife_1840 Acife_1840 1829038 1829706 + High frequency lysogenization protein hflD KEGG: afr:AFE_0923 hypothetical protein~HAMAP: Uncharacterised protein family UPF0274~PFAM: Uncharacterised protein family UPF0274 gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1840 Acife_1841 Acife_1841 Acife_1841 1829986 1831005 - hypothetical protein gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1841 Acife_1842 Acife_1842 Acife_1842 1831367 1832302 - Cytochrome c oxidase caa3-type%2C assembly factor CtaG-related protein PFAM: Cytochrome c oxidase caa3-type%2C assembly factor CtaG-related~KEGG: afr:AFE_0131 hypothetical protein gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1842 Acife_1843 Acife_1843 Acife_1843 1832623 1832857 - pseudogene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1843 Acife_1844 Acife_1844 Acife_1844 1832908 1833348 - pseudogene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1844 Acife_1845 Acife_1845 Acife_1845 1834137 1834358 - hypothetical protein gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1845 Acife_1846 Acife_1846 Acife_1846 1834432 1834749 - hypothetical protein gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1846 Acife_1847 Acife_1847 Acife_1847 1834839 1835513 + DsbG domain protein KEGG: afr:AFE_1943 DsbG domain protein gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1847 Acife_1848 Acife_1848 Acife_1848 1835583 1835948 - hypothetical protein KEGG: afr:AFE_3114 hypothetical protein gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1848 Acife_1849 Acife_1849 Acife_1849 1836094 1837281 - cytochrome c-type biogenesis protein CcsB KEGG: afe:Lferr_2711 cytochrome c-type biogenesis protein CcsB~TIGRFAM: Cytochrome c-type biogenesis protein CcsA~PFAM: Cytochrome c assembly protein gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1849 Acife_1850 Acife_1850 Acife_1850 1837274 1839124 - ResB family protein PFAM: ResB-like~KEGG: afr:AFE_3112 cytochrome c-type biogenesis protein ResB gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1850 Acife_1851 Acife_1851 Acife_1851 1839121 1839381 - hypothetical protein gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1851 Acife_1852 Acife_1852 Acife_1852 1839613 1839902 - pseudogene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1852 Acife_1853 Acife_1853 Acife_1853 1839991 1840791 - hypothetical protein KEGG: afr:AFE_3133 hypothetical protein gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1853 Acife_1854 Acife_1854 Acife_1854 1841251 1841655 + hypothetical protein KEGG: afr:AFE_3135 hypothetical protein gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1854 Acife_1855 Acife_1855 Acife_1855 1841973 1842311 - Conjugal transfer TraD family protein PFAM: Conjugal transfer%2C TraD%2C alpha-type gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1855 Acife_1856 Acife_1856 Acife_1856 1842370 1842675 - pseudogene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1856 Acife_1857 Acife_1857 Acife_1857 1843104 1844357 + integral membrane sensor signal transduction histidine kinase KEGG: afr:AFE_3136 sensor histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1857 Acife_1858 Acife_1858 Acife_1858 1844357 1844932 + two component transcriptional regulator%2C Fis family KEGG: afe:Lferr_2736 two component fis family transcriptional regulator~PFAM: Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver region gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1858 Acife_1859 Acife_1859 Acife_1859 1844992 1845630 - 2OG-Fe(II) oxygenase KEGG: afr:AFE_3138 oxidoreductase%2C 2OG-Fe(II) oxygenase family~PFAM: Oxoglutarate/iron-dependent oxygenase~SMART: Prolyl 4-hydroxylase%2C alpha subunit gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1859 Acife_1860 Acife_1860 Acife_1860 1845920 1846447 - hypothetical protein KEGG: afr:AFE_3139 hypothetical protein gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1860 Acife_1861 Acife_1861 Acife_1861 1846728 1847921 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afe:Lferr_2740 major facilitator superfamily protein gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1861 Acife_1862 Acife_1862 Acife_1862 1847965 1848909 - Protoheme IX farnesyltransferase TIGRFAM: Protohaem IX farnesyltransferase~HAMAP: Protohaem IX farnesyltransferase~KEGG: afr:AFE_3143 protoheme IX farnesyltransferase~PFAM: UbiA prenyltransferase gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1862 Acife_1863 Acife_1863 Acife_1863 1848927 1849880 - hypothetical protein KEGG: afe:Lferr_2742 hypothetical protein gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1863 Acife_1864 Acife_1864 Acife_1864 1850171 1850734 - rusticyanin KEGG: afr:AFE_3146 rusticyanin~TIGRFAM: Rusticyanin~PFAM: Blue (type 1) copper domain gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1864 Acife_1865 Acife_1865 Acife_1865 1850864 1851004 - hypothetical protein KEGG: afe:Lferr_2744 hypothetical protein gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1865 Acife_1866 Acife_1866 Acife_1866 1851196 1851390 - cytochrome c oxidase%2C aa3-type%2C subunit IV KEGG: afr:AFE_3147 cytochrome c oxidase%2C aa3-type%2C subunit IV gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1866 Acife_1867 Acife_1867 Acife_1867 1851430 1851984 - cytochrome c oxidase%2C aa3-type%2C subunit III KEGG: afr:AFE_3148 cytochrome c oxidase%2C aa3-type%2C subunit III gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1867 Acife_1868 Acife_1868 Acife_1868 1852003 1853886 - cytochrome c oxidase subunit I PFAM: Cytochrome c oxidase%2C subunit I~KEGG: afr:AFE_3149 cytochrome c oxidase%2C aa3-type%2C subunit I gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1868 Acife_1869 Acife_1869 Acife_1869 1853939 1854703 - cytochrome c oxidase subunit II PFAM: Cytochrome c oxidase subunit II C-terminal~KEGG: afr:AFE_3150 cytochrome c oxidase%2C aa3-type%2C subunit II gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1869 Acife_1870 Acife_1870 Acife_1870 1854718 1855269 - hypothetical protein KEGG: afr:AFE_3151 hypothetical protein gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1870 Acife_1871 Acife_1871 Acife_1871 1855377 1856066 - cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: afr:AFE_3152 cytochrome c552 gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1871 Acife_1872 Acife_1872 Acife_1872 1856078 1857535 - cytochrome c KEGG: afr:AFE_3153 cytochrome c gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1872 Acife_1873 Acife_1873 Acife_1873 1858526 1858909 - protein of unknown function DUF423 PFAM: Protein of unknown function DUF423~KEGG: afr:AFE_0152 hypothetical protein gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1873 Acife_1874 Acife_1874 Acife_1874 1858966 1859244 - hypothetical protein KEGG: afe:Lferr_2718 hypothetical protein gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1874 Acife_1875 Acife_1875 Acife_1875 1859450 1861924 - UPF0753 protein KEGG: afe:Lferr_1358 hypothetical protein~HAMAP: UPF0753 protein~PFAM: Protein of unknown function DUF2309 gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1875 Acife_1876 Acife_1876 Acife_1876 1861927 1863573 - NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH:ubiquinone/plastoquinone oxidoreductase~KEGG: afr:AFE_1662 NADH dehydrogenase%2C putative gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1876 Acife_1877 Acife_1877 Acife_1877 1864046 1864315 + hypothetical protein KEGG: afr:AFE_1669 hypothetical protein gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1877 Acife_1878 Acife_1878 Acife_1878 1864382 1865260 + hypothetical protein KEGG: afe:Lferr_1367 hypothetical protein gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1878 Acife_1879 Acife_1879 Acife_1879 1865317 1865874 + hypothetical protein KEGG: afr:AFE_1671 hypothetical protein gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1879 Acife_1880 Acife_1880 Acife_1880 1865942 1866979 + Dihydroorotase TIGRFAM: Dihydroorotase homodimeric type~HAMAP: Dihydroorotase~KEGG: afr:AFE_1672 dihydroorotase~PFAM: Amidohydrolase 1 gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1880 Acife_1881 Acife_1881 Acife_1881 1867062 1868735 + Dihydroxy-acid dehydratase TIGRFAM: Dihydroxy-acid dehydratase~HAMAP: Dihydroxy-acid dehydratase~KEGG: afe:Lferr_1370 dihydroxy-acid dehydratase~PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1881 Acife_1882 Acife_1882 Acife_1882 1868739 1868852 - pseudogene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1882 Acife_1883 Acife_1883 Acife_1883 1869252 1869800 + hypothetical protein KEGG: afr:AFE_1798 hypothetical protein gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1883 Acife_1884 Acife_1884 Acife_1884 1869833 1870105 + hypothetical protein KEGG: afr:AFE_1795 hypothetical protein gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1884 Acife_1885 Acife_1885 Acife_1885 1870346 1871386 + hypothetical protein gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1885 Acife_1886 Acife_1886 Acife_1886 1871597 1872076 - alkylhydroperoxidase like protein%2C AhpD family KEGG: afr:AFE_2014 alkylhydroperoxidase AhpD family core domain protein~TIGRFAM: Alkylhydroperoxidase AhpD core~PFAM: Carboxymuconolactone decarboxylase gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1886 Acife_1887 Acife_1887 Acife_1887 1872144 1872611 + transcriptional regulator%2C MarR family KEGG: afe:Lferr_1679 MarR family transcriptional regulator~PFAM: HTH transcriptional regulator%2C MarR~SMART: HTH transcriptional regulator%2C MarR gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1887 Acife_1888 Acife_1888 Acife_1888 1873218 1873460 + hypothetical protein gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1888 Acife_1889 Acife_1889 Acife_1889 1873872 1875002 + integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: dds:Ddes_0438 hypothetical protein gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1889 Acife_1890 Acife_1890 Acife_1890 1874999 1876528 - ParB domain protein nuclease KEGG: afr:AFE_1719 ParB family protein~PFAM: ParB-like nuclease~SMART: ParB-like nuclease gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1890 Acife_1891 Acife_1891 Acife_1891 1876525 1877343 - Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: afe:Lferr_1411 cobyrinic acid ac-diamide synthase gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1891 Acife_1892 Acife_1892 Acife_1892 1877516 1877986 - hypothetical protein KEGG: mei:Msip34_2899 hypothetical protein gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1892 Acife_1893 Acife_1893 Acife_1893 1878139 1878435 - hypothetical protein gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1893 Acife_1894 Acife_1894 Acife_1894 1878440 1879828 - conjugation TrbI family protein PFAM: Bacterial conjugation TrbI-like protein~KEGG: afe:Lferr_0259 conjugation TrbI family protein gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1894 Acife_1895 Acife_1895 Acife_1895 1879830 1880105 - hypothetical protein gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1895 Acife_1896 Acife_1896 Acife_1896 1880117 1881295 - Conjugal transfer protein TrbG/VirB9/CagX PFAM: Conjugal transfer%2C TrbG/VirB9/CagX~KEGG: afe:Lferr_0257 conjugal transfer protein TrbG/VirB9/CagX gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1896 Acife_1897 Acife_1897 Acife_1897 1881311 1881976 - conjugal transfer protein KEGG: afr:AFE_1694 conjugal transfer protein gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1897 Acife_1898 Acife_1898 Acife_1898 1882102 1883817 - P-type conjugative transfer protein TrbL KEGG: afe:Lferr_0251 P-type conjugative transfer protein TrbL~TIGRFAM: Conjugal transfer%2C TrbL~PFAM: Conjugal transfer%2C TrbL/VirB6 gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1898 Acife_1899 Acife_1899 Acife_1899 1883847 1884668 - P-type conjugative transfer protein TrbJ TIGRFAM: P-type conjugative transfer protein TrbJ~KEGG: afr:AFE_1640 conjugal transfer protein TrbJ%2C putative gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1899 Acife_1900 Acife_1900 Acife_1900 1884958 1887363 - outer membrane autotransporter barrel domain protein TIGRFAM: Outer membrane autotransporter barrel~KEGG: hypothetical protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1900 Acife_1901 Acife_1901 Acife_1901 1887775 1887999 - hypothetical protein gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1901 Acife_1902 Acife_1902 Acife_1902 1888049 1889380 - hypothetical protein KEGG: hif:HIBPF05270 trimeric autotransporter adhesin gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1902 Acife_1903 Acife_1903 Acife_1903 1889421 1889687 - hypothetical protein gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1903 Acife_1904 Acife_1904 Acife_1904 1889881 1892433 - CagE%2C TrbE%2C VirB component of type IV transporter system%2C conserved region KEGG: afe:Lferr_1339 CagE TrbE VirB component of type IV transporter system~PFAM: CagE%2C TrbE%2C VirB component of type IV transporter system%2C conserved region~SMART: ATPase%2C AAA+ type%2C core gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1904 Acife_1905 Acife_1905 Acife_1905 1892444 1892926 - hypothetical protein gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1905 Acife_1906 Acife_1906 Acife_1906 1892948 1893268 - hypothetical protein KEGG: gem:GM21_2349 type IV secretory pathway VirB3 family protein gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1906 Acife_1907 Acife_1907 Acife_1907 1893272 1893673 - Conjugal transfer protein TrbC PFAM: Conjugal transfer%2CTrbC~KEGG: cak:Caul_5374 conjugal transfer protein TrbC gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1907 Acife_1908 Acife_1908 Acife_1908 1893759 1893947 - hypothetical protein gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1908 Acife_1909 Acife_1909 Acife_1909 1894294 1895247 - P-type conjugative transfer ATPase TrbB KEGG: afe:Lferr_0244 P-type conjugative transfer ATPase TrbB~TIGRFAM: ATPase%2C P-type conjugative transfer%2C TrbB~PFAM: Type II secretion system protein E gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1909 Acife_1910 Acife_1910 Acife_1910 1895355 1895801 - hypothetical protein KEGG: afe:Lferr_0238 hypothetical protein gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1910 Acife_1911 Acife_1911 Acife_1911 1895788 1896045 - hypothetical protein gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1911 Acife_1912 Acife_1912 Acife_1912 1896042 1897892 - DNA topoisomerase III TIGRFAM: DNA topoisomerase III%2C bacterial-type~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain~KEGG: afe:Lferr_0283 DNA topoisomerase III~SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain%2C subgroup gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1912 Acife_1913 Acife_1913 Acife_1913 1897971 1898351 - hypothetical protein gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1913 Acife_1914 Acife_1914 Acife_1914 1898720 1900459 - sigma-70 region 4 domain protein PFAM: RNA polymerase sigma-70 region 4 gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1914 Acife_1915 Acife_1915 Acife_1915 1900973 1901773 - hypothetical protein KEGG: afr:AFE_0416 pilin%2C putative gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1915 Acife_1916 Acife_1916 Acife_1916 1901866 1902156 - hypothetical protein gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1916 Acife_1917 Acife_1917 Acife_1917 1902289 1902600 - hypothetical protein gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1917 Acife_1918 Acife_1918 Acife_1918 1902921 1903277 - hypothetical protein gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1918 Acife_1919 Acife_1919 Acife_1919 1903380 1906070 - DNA-directed DNA polymerase KEGG: rcu:RCOM_1784370 DNA polymerase I%2C putative~PFAM: DNA-directed DNA polymerase%2C family A%2C palm domain~SMART: DNA-directed DNA polymerase%2C family A%2C palm domain gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1919 Acife_1920 Acife_1920 Acife_1920 1906311 1909079 - hypothetical protein KEGG: bug:BC1001_1781 toprim sub domain-containing protein gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1920 Acife_1921 Acife_1921 Acife_1921 1909841 1910065 - hypothetical protein gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1921 Acife_1922 Acife_1922 Acife_1922 1910239 1910685 + hypothetical protein gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1922 Acife_1923 Acife_1923 Acife_1923 1911276 1911629 - PemK family protein PFAM: PemK-like protein~KEGG: bug:BC1001_3350 PemK family protein gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1923 Acife_1924 Acife_1924 Acife_1924 1911626 1911895 - SpoVT/AbrB domain-containing protein PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: bug:BC1001_3349 SpoVT/AbrB domain-containing protein gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1924 Acife_1925 Acife_1925 Acife_1925 1912225 1912731 - hypothetical protein KEGG: pla:Plav_2323 hypothetical protein gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1925 Acife_1926 Acife_1926 Acife_1926 1912902 1913186 + hypothetical protein gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1926 Acife_1927 Acife_1927 Acife_1927 1913286 1913540 + hypothetical protein gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1927 Acife_1928 Acife_1928 Acife_1928 1913484 1913750 - hypothetical protein gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1928 Acife_1929 Acife_1929 Acife_1929 1913855 1914316 + hypothetical protein gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1929 Acife_1930 Acife_1930 Acife_1930 1914363 1915361 - phosphoadenosine phosphosulfate reductase PFAM: Phosphoadenosine phosphosulphate reductase~KEGG: vei:Veis_3757 phosphoadenosine phosphosulfate reductase gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1930 Acife_1931 Acife_1931 Acife_1931 1915628 1917277 + type IV secretory pathway VirD2 pilin (relaxase)-like protein KEGG: afe:Lferr_0242 type IV secretory pathway VirD2 pilin (relaxase)-like protein gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1931 Acife_1932 Acife_1932 Acife_1932 1917346 1917723 + hypothetical protein gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1932 Acife_1933 Acife_1933 Acife_1933 1917893 1918186 + hypothetical protein gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1933 Acife_1934 Acife_1934 Acife_1934 1918230 1918595 + 17 kDa surface antigen PFAM: Rickettsia 17kDa surface antigen~KEGG: afr:AFE_1234 lipoprotein%2C putative gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1934 Acife_1935 Acife_1935 Acife_1935 1918610 1918771 + hypothetical protein gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1935 Acife_1936 Acife_1936 Acife_1936 1918774 1919244 + hypothetical protein KEGG: afe:Lferr_1333 hypothetical protein gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1936 Acife_1937 Acife_1937 Acife_1937 1919310 1920626 + hypothetical protein gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1937 Acife_1938 Acife_1938 Acife_1938 1920693 1923122 + domain of unknown function DUF1738 PFAM: Domain of unknown function DUF1738~KEGG: afe:Lferr_0235 hypothetical protein gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1938 Acife_1939 Acife_1939 Acife_1939 1923125 1924228 + hypothetical protein KEGG: sma:SAV_4852 putative oxidoreductase/heat repeat-containing protein gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1939 Acife_1940 Acife_1940 Acife_1940 1924225 1925775 + hypothetical protein gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1940 Acife_1941 Acife_1941 Acife_1941 1925874 1926473 + Peptidase S26%2C conserved region PFAM: Peptidase S26%2C conserved region~KEGG: afr:AFE_1726 conjugal transfer protein TraF%2C putative gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1941 Acife_1942 Acife_1942 Acife_1942 1926470 1927042 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: afr:AFE_1698 conjugal transfer -like protein gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1942 Acife_1943 Acife_1943 Acife_1943 1927067 1927618 + hypothetical protein gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1943 Acife_1944 Acife_1944 Acife_1944 1927743 1928126 + hypothetical protein KEGG: tkm:TK90_2739 hypothetical protein gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1944 Acife_1945 Acife_1945 Acife_1945 1928149 1929345 + TraB family protein KEGG: tin:Tint_2014 TraB family protein gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1945 Acife_1946 Acife_1946 Acife_1946 1929364 1930158 - hypothetical protein KEGG: bch:Bcen2424_6894 hypothetical protein gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1946 Acife_1947 Acife_1947 Acife_1947 1930189 1931313 - hypothetical protein KEGG: xau:Xaut_0681 hypothetical protein gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1947 Acife_1948 Acife_1948 Acife_1948 1931310 1934336 - type III restriction protein res subunit PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: dly:Dehly_1610 type III site-specific deoxyribonuclease gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1948 Acife_1949 Acife_1949 Acife_1949 1934342 1936249 - DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6~KEGG: dly:Dehly_1612 adenine-specific DNA-methyltransferase gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1949 Acife_1950 Acife_1950 Acife_1950 1936331 1937449 - hypothetical protein KEGG: slt:Slit_1103 hypothetical protein gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1950 Acife_1951 Acife_1951 Acife_1951 1937478 1938242 - HNH endonuclease KEGG: shn:Shewana3_2957 HNH endonuclease gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1951 Acife_1952 Acife_1952 Acife_1952 1938260 1938730 - hypothetical protein KEGG: cpc:Cpar_0774 hypothetical protein gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1952 Acife_1953 Acife_1953 Acife_1953 1938731 1941658 - SNF2-related protein KEGG: msl:Msil_1945 helicase domain protein~PFAM: SNF2-related%3B TT viral ORF2 protein%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1953 Acife_1954 Acife_1954 Acife_1954 1941691 1942791 - GTP-binding protein HSR1-related protein PFAM: GTP-binding protein%2C HSR1-related~KEGG: gym:GYMC10_6289 small GTP-binding protein gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1954 Acife_1955 Acife_1955 Acife_1955 1943223 1943762 - hypothetical protein gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1955 Acife_1956 Acife_1956 Acife_1956 1943813 1944100 - histone family protein DNA-binding protein KEGG: afr:AFE_1070 DNA-binding protein%2C HU family~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1956 Acife_1957 Acife_1957 Acife_1957 1944201 1944657 - pseudogene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1957 Acife_1958 Acife_1958 Acife_1958 1944730 1944870 - hypothetical protein gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1958 Acife_1959 Acife_1959 Acife_1959 1944903 1945130 - hypothetical protein gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1959 Acife_1960 Acife_1960 Acife_1960 1945279 1945635 - hypothetical protein KEGG: afr:AFE_1585 hypothetical protein gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1960 Acife_1961 Acife_1961 Acife_1961 1945647 1945769 - histone family protein DNA-binding protein PFAM: Histone-like bacterial DNA-binding protein~KEGG: afr:AFE_1584 DNA-binding protein HU family protein gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1961 Acife_1962 Acife_1962 Acife_1962 1945848 1946174 - histone family protein DNA-binding protein KEGG: afr:AFE_1070 DNA-binding protein%2C HU family~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1962 Acife_1963 Acife_1963 Acife_1963 1946407 1946604 - pseudogene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1963 Acife_1964 Acife_1964 Acife_1964 1946623 1946901 - transcriptional regulator%2C CopG family PFAM: CopG-like DNA-binding~KEGG: xfa:XF2075 hypothetical protein gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1964 Acife_1965 Acife_1965 Acife_1965 1947258 1948580 - hypothetical protein KEGG: apt:APA01_21560 outer membrane protein gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1965 Acife_1966 Acife_1966 Acife_1966 1948562 1949293 - hypothetical protein gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1966 Acife_1967 Acife_1967 Acife_1967 1949290 1949721 - hypothetical protein gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1967 Acife_1968 Acife_1968 Acife_1968 1949693 1950151 - hypothetical protein gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1968 Acife_1969 Acife_1969 Acife_1969 1950141 1951400 - Type II secretion system F domain-containing protein PFAM: Type II secretion system F domain~KEGG: afr:AFE_0972 type IV pilus biogenesis protein PilC gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1969 Acife_1970 Acife_1970 Acife_1970 1951480 1951665 - hypothetical protein gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1970 Acife_1971 Acife_1971 Acife_1971 1951847 1953010 - transposase%2C IS605 OrfB family KEGG: afr:AFE_1215 ISAfe8%2C transposase~TIGRFAM: Transposase%2C IS605 OrfB%2C C-terminal~PFAM: Transposase%2C probable%2C IS891/IS1136/IS1341%3B Transposase%2C IS605 OrfB%2C C-terminal gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1971 Acife_1972 Acife_1972 Acife_1972 1953116 1953328 - hypothetical protein KEGG: afr:AFE_0418 hypothetical protein gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1972 Acife_1973 Acife_1973 Acife_1973 1953325 1953942 - hypothetical protein gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1973 Acife_1974 Acife_1974 Acife_1974 1953966 1954157 - hypothetical protein gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1974 Acife_1975 Acife_1975 Acife_1975 1954173 1954601 - hypothetical protein gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1975 Acife_1976 Acife_1976 Acife_1976 1954736 1955350 - pilin%2C putative KEGG: afr:AFE_0416 pilin%2C putative gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1976 Acife_1977 Acife_1977 Acife_1977 1955841 1956290 + Sel1 domain protein repeat-containing protein PFAM: Sel1-like~KEGG: afr:AFE_0409 hypothetical protein gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1977 Acife_1978 Acife_1978 Acife_1978 1956304 1958174 + pseudogene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1978 Acife_1979 Acife_1979 Acife_1979 1956557 1957771 - transposase IS204/IS1001/IS1096/IS1165 family protein PFAM: Transposase%2C IS204/IS1001/IS1096/IS1165~KEGG: cph:Cpha266_2270 transposase%2C IS204/IS1001/IS1096/IS1165 family protein gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1979 Acife_1980 Acife_1980 Acife_1980 1958231 1958482 + hypothetical protein gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1980 Acife_1981 Acife_1981 Acife_1981 1958876 1960432 - transposase IS66 PFAM: Transposase%2C IS66~KEGG: eba:ebA859 transposase gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1981 Acife_1982 Acife_1982 Acife_1982 1960387 1960590 - hypothetical protein gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1982 Acife_1983 Acife_1983 Acife_1983 1960580 1960930 - IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2 like~KEGG: eba:ebB23 transpoase helper protein gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1983 Acife_1984 Acife_1984 Acife_1984 1960930 1961292 - hypothetical protein KEGG: eba:ebD29 hypothetical protein gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1984 Acife_1985 Acife_1985 Acife_1985 1961366 1962418 - hypothetical protein KEGG: gpb:HDN1F_00180 hypothetical protein gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1985 Acife_1986 Acife_1986 Acife_1986 1962441 1962896 - phospholipid/glycerol acyltransferase SMART: Phospholipid/glycerol acyltransferase~KEGG: afe:Lferr_1301 phospholipid/glycerol acyltransferase gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1986 Acife_1987 Acife_1987 Acife_1987 1962893 1964386 - hypothetical protein gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1987 Acife_1988 Acife_1988 Acife_1988 1964405 1965160 - hypothetical protein gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1988 Acife_1989 Acife_1989 Acife_1989 1965264 1965551 - hypothetical protein gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1989 Acife_1990 Acife_1990 Acife_1990 1965686 1968181 - TRAG family protein PFAM: TRAG protein~KEGG: hna:Hneap_1649 TraG family protein gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1990 Acife_1991 Acife_1991 Acife_1991 1968224 1968586 - hypothetical protein KEGG: aav:Aave_0391 hypothetical protein gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1991 Acife_1992 Acife_1992 Acife_1992 1968868 1969284 - hypothetical protein gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1992 Acife_1993 Acife_1993 Acife_1993 1969537 1970214 - ParB domain protein nuclease KEGG: dds:Ddes_1577 ParB domain protein nuclease~PFAM: ParB-like nuclease~SMART: ParB-like nuclease gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1993 Acife_1994 Acife_1994 Acife_1994 1970217 1970639 - hypothetical protein gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1994 Acife_1995 Acife_1995 Acife_1995 1970745 1971965 - phosphoadenosine phosphosulfate reductase PFAM: Phosphoadenosine phosphosulphate reductase~KEGG: dds:Ddes_1579 phosphoadenosine phosphosulfate reductase gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1995 Acife_1996 Acife_1996 Acife_1996 1972078 1973523 - helicase domain-containing protein KEGG: aoe:Clos_1290 helicase domain-containing protein~PFAM: DNA/RNA helicase%2C C-terminal%3B SNF2-related~SMART: DNA/RNA helicase%2C C-terminal%3B DEAD-like helicase%2C N-terminal gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1996 Acife_1997 Acife_1997 Acife_1997 1973501 1974505 - hypothetical protein gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1997 Acife_1998 Acife_1998 Acife_1998 1975162 1975740 + NLP/P60 protein PFAM: NLP/P60~KEGG: afr:AFE_1828 lipoprotein%2C NLP/P60 family gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1998 Acife_1999 Acife_1999 Acife_1999 1975780 1976946 + membrane-bound lytic murein transglycosylase B%2C putative KEGG: afr:AFE_1827 membrane-bound lytic murein transglycosylase B%2C putative gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_1999 Acife_2000 Acife_2000 Acife_2000 1977043 1978389 + 5-methylthioadenosine/S-adenosylhomocysteine deaminase KEGG: afr:AFE_1826 amidohydrolase family protein~HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase~PFAM: Amidohydrolase 1 gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2000 Acife_2001 Acife_2001 Acife_2001 1978386 1979093 + 3-demethylubiquinone-9 3-methyltransferase TIGRFAM: Ubiquinone biosynthesis O-methyltransferase~HAMAP: 3-demethylubiquinone-9 3-methyltransferase~KEGG: afr:AFE_1825 3-demethylubiquinone-9 3-methyltransferase~PFAM: Methyltransferase type 11 gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2001 Acife_2002 Acife_2002 Acife_2002 1979065 1979760 + phosphoglycolate phosphatase KEGG: afr:AFE_1823 phosphoglycolate phosphatase~TIGRFAM: 2-phosphoglycolate phosphatase%2C prokaryotic%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~PFAM: Haloacid dehalogenase-like hydrolase gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2002 Acife_2003 Acife_2003 Acife_2003 1979722 1980780 - protein of unknown function DUF6 transmembrane PFAM: Protein of unknown function DUF6%2C transmembrane~KEGG: afr:AFE_1824 hypothetical protein gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2003 Acife_2004 Acife_2004 Acife_2004 1980827 1982023 + succinyldiaminopimelate transaminase KEGG: afr:AFE_1821 aminotransferase%2C classes I and II~TIGRFAM: Succinyldiaminopimelate transaminase%2C beta/gammaproteobacteria~PFAM: Aminotransferase%2C class I/II gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2004 Acife_2005 Acife_2005 Acife_2005 1982047 1982871 + 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase TIGRFAM: 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase~HAMAP: 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase~KEGG: afr:AFE_1820 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase~PFAM: Bacterial transferase hexapeptide repeat gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2005 Acife_2006 Acife_2006 Acife_2006 1982884 1984032 + Succinyl-diaminopimelate desuccinylase TIGRFAM: Succinyl-diaminopimelate desuccinylase%2C proteobacteria~HAMAP: Succinyl-diaminopimelate desuccinylase%2C proteobacteria~KEGG: afr:AFE_1819 succinyl-diaminopimelate desuccinylase~PFAM: Peptidase M20%3B Peptidase M20%2C dimerisation gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2006 Acife_2007 Acife_2007 Acife_2007 1984022 1984846 + rare lipoprotein A KEGG: afr:AFE_1818 rare lipoprotein A%2C putative~TIGRFAM: Rare lipoprotein A%2C bacterial~PFAM: Rare lipoprotein A%3B Sporulation/cell division region%2C bacteria gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2007 Acife_2008 Acife_2008 Acife_2008 1984859 1985821 + sulfotransferase PFAM: Sulfotransferase~KEGG: afr:AFE_1817 sulfotransferase domain protein gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2008 Acife_2009 Acife_2009 Acife_2009 1985919 1988330 + phosphoenolpyruvate synthase KEGG: afr:AFE_1816 phosphoenolpyruvate synthase~TIGRFAM: Phosphoenolpyruvate synthase~PFAM: Pyruvate phosphate dikinase%2C PEP/pyruvate-binding%3B PEP-utilising enzyme%2C mobile region%3B PEP-utilising enzyme gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2009 Acife_2010 Acife_2010 Acife_2010 1988327 1989850 + 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase TIGRFAM: Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent~HAMAP: Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent~KEGG: afr:AFE_1815 phosphoglyceromutase~PFAM: BPG-independent PGAM%2C N-terminal%3B Metalloenzyme gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2010 Acife_2011 Acife_2011 Acife_2011 1989895 1990869 + catalytic domain-containing protein of components of various dehydrogenase complexes PFAM: 2-oxoacid dehydrogenase acyltransferase%2C catalytic domain%3B Biotin/lipoyl attachment~KEGG: afr:AFE_1811 2-oxo acid dehydrogenase%2C acyltransferase%2C putative gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2011 Acife_2012 Acife_2012 Acife_2012 1990866 1992056 + Acetate kinase TIGRFAM: Acetate kinase~HAMAP: Acetate kinase~KEGG: afr:AFE_1810 acetate kinase~PFAM: Acetate/butyrate kinase gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2012 Acife_2013 Acife_2013 Acife_2013 1992053 1993546 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_1809 major facilitator family protein gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2013 Acife_2014 Acife_2014 Acife_2014 1993571 1994494 + phosphate acetyl/butaryl transferase PFAM: Phosphate acetyl/butaryl transferase~KEGG: afr:AFE_1808 phosphate acetyl/butyryl transferase gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2014 Acife_2015 Acife_2015 Acife_2015 1994491 1995450 + 1-phosphofructokinase KEGG: afr:AFE_1807 carbohydrate kinase%2C PfkB family~TIGRFAM: 1-phosphofructokinase~PFAM: Carbohydrate/purine kinase gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2015 Acife_2016 Acife_2016 Acife_2016 1995576 1996025 - hypothetical protein KEGG: afe:Lferr_1481 hypothetical protein gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2016 Acife_2017 Acife_2017 Acife_2017 1996516 1997913 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation~KEGG: afr:AFE_1803 pyridine nucleotide-disulfide oxidoreductase gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2017 Acife_2018 Acife_2018 Acife_2018 1997906 1998826 + deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase~KEGG: afr:AFE_1802 aldolase gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2018 Acife_2019 Acife_2019 Acife_2019 1998823 1999131 + Pyruvate kinase barrel PFAM: Pyruvate kinase%2C barrel%3B Enolase%2C C-terminal~KEGG: afe:Lferr_1478 pyruvate kinase gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2019 Acife_2020 Acife_2020 Acife_2020 1999145 2001670 + alpha-glucan phosphorylase KEGG: afr:AFE_1799 alpha-glucan phosphorylase family protein~TIGRFAM: Alpha-glucan phosphorylase~PFAM: Glycosyl transferase%2C family 35 gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2020 Acife_2021 Acife_2021 Acife_2021 2001683 2002240 + hypothetical protein KEGG: afr:AFE_1798 hypothetical protein gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2021 Acife_2022 Acife_2022 Acife_2022 2002332 2002988 + phosphoribosyltransferase PFAM: Phosphoribosyltransferase~KEGG: afr:AFE_3103 phosphoribosyl transferase domain protein gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2022 Acife_2023 Acife_2023 Acife_2023 2002998 2003300 + hypothetical protein gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2023 Acife_2024 Acife_2024 Acife_2024 2003331 2003684 - hypothetical protein KEGG: afr:AFE_2085 hypothetical protein gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2024 Acife_2025 Acife_2025 Acife_2025 2003790 2004050 + Transglycosylase-associated protein PFAM: Transglycosylase-associated protein~KEGG: afe:Lferr_1472 transglycosylase-associated protein gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2025 Acife_2026 Acife_2026 Acife_2026 2004068 2004769 - HhH-GPD family protein KEGG: afr:AFE_1794 base excision repair protein%2C HhH-GPD family~PFAM: HhH-GPD domain~SMART: HhH-GPD domain gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2026 Acife_2027 Acife_2027 Acife_2027 2004779 2005654 - pseudouridine synthase Rsu TIGRFAM: Pseudouridine synthase%2C RsuA and RluB/E/F~PFAM: RNA-binding S4%3B Pseudouridine synthase%2C RsuA and RluB/C/D/E/F~KEGG: afr:AFE_1793 ribosomal large subunit pseudouridine synthase B~SMART: RNA-binding S4 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2027 Acife_2028 Acife_2028 Acife_2028 2005781 2007085 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: afr:AFE_1792 sulfide-quinone reductase%2C putative gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2028 Acife_2029 Acife_2029 Acife_2029 2007276 2007779 - chromosome segregation and condensation protein%2C ScpB PFAM: Chromosome segregation/condensation protein ScpB%2C prokaryote~KEGG: afr:AFE_1791 segregation and condensation protein B gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2029 Acife_2030 Acife_2030 Acife_2030 2007772 2008611 - chromosome segregation and condensation protein ScpA KEGG: afr:AFE_1790 segregation and condensation protein A~manually curated~PFAM: Prokaryotic chromosome segregation/condensation protein ScpA gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2030 Acife_2031 Acife_2031 Acife_2031 2008592 2009803 - tryptophanyl-tRNA synthetase KEGG: afr:AFE_1789 tryptophanyl-tRNA synthetase~TIGRFAM: Tryptophanyl-tRNA synthetase%2C class Ib~PFAM: Aminoacyl-tRNA synthetase%2C class Ib gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2031 Acife_2032 Acife_2032 Acife_2032 2009803 2010462 - peptidase M50 PFAM: Peptidase M50~KEGG: afr:AFE_1788 membrane-associated zinc metalloprotease%2C putative gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2032 Acife_2033 Acife_2033 Acife_2033 2010496 2011149 - Sua5/YciO/YrdC/YwlC family protein KEGG: afr:AFE_1787 SUA5/YciO/YrdC/YwlC family protein~TIGRFAM: Sua5/YciO/YrdC/YwlC~PFAM: Sua5/YciO/YrdC%2C N-terminal gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2033 Acife_2034 Acife_2034 Acife_2034 2011392 2012216 + hypothetical protein KEGG: afr:AFE_1786 hypothetical protein gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2034 Acife_2035 Acife_2035 Acife_2035 2012255 2012533 - hypothetical protein KEGG: bgf:BC1003_1824 putative signal peptide protein gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2035 Acife_2036 Acife_2036 Acife_2036 2012593 2012874 - hypothetical protein KEGG: afr:AFE_1785 hypothetical protein gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2036 Acife_2037 Acife_2037 Acife_2037 2013266 2015617 + MscS Mechanosensitive ion channel PFAM: Mechanosensitive ion channel MscS~KEGG: afr:AFE_1784 mechanosensitive ion channel family protein gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2037 Acife_2038 Acife_2038 Acife_2038 2015577 2016770 - Glutamate 5-kinase SMART: Pseudouridine synthase/archaeosine transglycosylase~TIGRFAM: Glutamate 5-kinase%2C ProB-related~KEGG: afe:Lferr_1460 glutamate 5-kinase~HAMAP: Glutamate 5-kinase~PFAM: Aspartate/glutamate/uridylate kinase%3B Pseudouridine synthase/archaeosine transglycosylase gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2038 Acife_2039 Acife_2039 Acife_2039 2017022 2018566 - GMP synthase (glutamine-hydrolyzing) TIGRFAM: GMP synthase%2C C-terminal%3B GMP synthase%2C N-terminal~HAMAP: GMP synthase [glutamine-hydrolyzing]~KEGG: afr:AFE_1778 GMP synthase~PFAM: GMP synthase%2C C-terminal%3B Glutamine amidotransferase class-I%2C C-terminal%3B tRNA methyl transferase-like%3B NAD+ synthase gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2039 Acife_2040 Acife_2040 Acife_2040 2018570 2020030 - inosine-5'-monophosphate dehydrogenase TIGRFAM: IMP dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B Cystathionine beta-synthase%2C core~KEGG: afr:AFE_1777 inosine-5'-monophosphate dehydrogenase~SMART: Cystathionine beta-synthase%2C core gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2040 Acife_2041 Acife_2041 Acife_2041 2020205 2021188 + glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: afr:AFE_1776 glycosyl transferase gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2041 Acife_2042 Acife_2042 Acife_2042 2021330 2022826 + poly(A) polymerase KEGG: afe:Lferr_1451 poly(A) polymerase~TIGRFAM: Poly(A) polymerase%2C PcnB~PFAM: Polynucleotide adenylyltransferase region gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2042 Acife_2043 Acife_2043 Acife_2043 2022846 2024195 + Polynucleotide adenylyltransferase region KEGG: afr:AFE_1774 polyA polymerase family protein~manually curated~PFAM: Polynucleotide adenylyltransferase region gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2043 Acife_2044 Acife_2044 Acife_2044 2024153 2024722 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase KEGG: afe:Lferr_1449 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase~TIGRFAM: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK~PFAM: 7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2044 Acife_2045 Acife_2045 Acife_2045 2024719 2025333 + deoxynucleoside kinase PFAM: Deoxynucleoside kinase~KEGG: afr:AFE_1772 deoxyguanosine kinase/deoxyadenosine kinase%2C putative gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2045 Acife_2046 Acife_2046 Acife_2046 2025326 2026111 + 3-methyl-2-oxobutanoate hydroxymethyltransferase TIGRFAM: Ketopantoate hydroxymethyltransferase~HAMAP: Ketopantoate hydroxymethyltransferase~KEGG: afr:AFE_1771 3-methyl-2-oxobutanoate hydroxymethyltransferase~PFAM: Ketopantoate hydroxymethyltransferase gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2046 Acife_2047 Acife_2047 Acife_2047 2026083 2026952 + Pantothenate synthetase TIGRFAM: Pantoate-beta-alanine ligase~HAMAP: Pantoate-beta-alanine ligase~KEGG: afr:AFE_1770 pantoate--beta-alanine ligase~PFAM: Pantoate-beta-alanine ligase gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2047 Acife_2048 Acife_2048 Acife_2048 2026949 2030782 + FAD linked oxidase domain protein PFAM: FAD linked oxidase%2C N-terminal%3B FAD-linked oxidase%2C C-terminal%3B Cysteine-rich region%2C CCG~KEGG: afr:AFE_1769 oxidoreductase%2C FAD-binding%2C putative gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2048 Acife_2049 Acife_2049 Acife_2049 2030782 2031471 + protein of unknown function DUF1275 PFAM: Protein of unknown function DUF1275~KEGG: nha:Nham_4228 hypothetical protein gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2049 Acife_2050 Acife_2050 Acife_2050 2031487 2031888 + Smr protein/MutS2 KEGG: afe:Lferr_1444 Smr protein/MutS2~PFAM: Smr protein/MutS2 C-terminal~SMART: Smr protein/MutS2 C-terminal gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2050 Acife_2051 Acife_2051 Acife_2051 2031897 2032523 + class II aldolase/adducin family protein PFAM: Class II aldolase/adducin%2C N-terminal~KEGG: afr:AFE_1766 hypothetical protein gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2051 Acife_2052 Acife_2052 Acife_2052 2032496 2033158 - Exonuclease RNase T and DNA polymerase III KEGG: afr:AFE_1767 exodeoxyribonuclease X%2C putative~PFAM: Exonuclease%2C RNase T/DNA polymerase III~SMART: Exonuclease gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2052 Acife_2053 Acife_2053 Acife_2053 2033390 2034088 + protein of unknown function UPF0005 PFAM: Uncharacterised protein family UPF0005~KEGG: afr:AFE_1764 hypothetical protein gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2053 Acife_2054 Acife_2054 Acife_2054 2034206 2036746 + DNA mismatch repair protein mutS SMART: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core~TIGRFAM: DNA mismatch repair protein MutS%2C type 1~KEGG: afr:AFE_1760 DNA mismatch repair protein MutS~HAMAP: DNA mismatch repair protein MutS%2C type 1~PFAM: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS-like%2C N-terminal%3B DNA mismatch repair protein MutS%2C connector%3B DNA mismatch repair protein MutS%2C core%3B DNA mismatch repair protein MutS%2C clamp gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2054 Acife_2055 Acife_2055 Acife_2055 2036815 2036967 + hypothetical protein gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2055 Acife_2056 Acife_2056 Acife_2056 2036948 2037478 + SNARE associated protein PFAM: SNARE associated Golgi protein~KEGG: afr:AFE_1136 membrane protein%2C DedA family gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2056 Acife_2057 Acife_2057 Acife_2057 2037538 2037732 + hypothetical protein gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2057 Acife_2058 Acife_2058 Acife_2058 2037719 2038435 + Protein of unknown function DUF2506 PFAM: Protein of unknown function DUF2506~KEGG: pla:Plav_1236 hypothetical protein gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2058 Acife_2059 Acife_2059 Acife_2059 2038479 2038748 - CopG family protein KEGG: pol:Bpro_0451 CopG family protein gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2059 Acife_2060 Acife_2060 Acife_2060 2038985 2039209 + hypothetical protein KEGG: afr:AFE_0867 hypothetical protein gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2060 Acife_2061 Acife_2061 Acife_2061 2039272 2039541 + hypothetical protein KEGG: afr:AFE_0865 hypothetical protein gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2061 Acife_2062 Acife_2062 Acife_2062 2039538 2040461 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: afr:AFE_0866 transcriptional regulator%2C LysR family gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2062 Acife_2063 Acife_2063 Acife_2063 2040555 2042111 + drug resistance transporter%2C EmrB/QacA subfamily KEGG: afr:AFE_0864 drug resistance transporter%2C EmrB/QacA family~TIGRFAM: Drug resistance transporter EmrB/QacA subfamily~PFAM: Major facilitator superfamily MFS-1 gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2063 Acife_2064 Acife_2064 Acife_2064 2042111 2043544 + RND efflux system%2C outer membrane lipoprotein%2C NodT family KEGG: afr:AFE_0863 RND efflux system%2C drug efflux transporter%2C outer membrane lipoprotein~TIGRFAM: RND efflux system%2C outer membrane lipoprotein%2C NodT~PFAM: Outer membrane efflux protein gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2064 Acife_2065 Acife_2065 Acife_2065 2043541 2044737 + secretion protein HlyD family protein PFAM: Secretion protein HlyD~KEGG: afe:Lferr_0986 secretion protein HlyD family protein gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2065 Acife_2066 Acife_2066 Acife_2066 2044837 2045298 + globin PFAM: Globin%2C subset~KEGG: afr:AFE_0861 globin domain protein gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2066 Acife_2067 Acife_2067 Acife_2067 2045362 2046345 + oxidoreductase FAD/NAD(P)-binding domain protein PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Oxidoreductase FAD-binding region%3B Ferredoxin~KEGG: afr:AFE_0860 iron-sulfur cluster-binding protein/oxidoreductase%2C FAD/NAD-binding gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2067 Acife_2068 Acife_2068 Acife_2068 2046364 2046609 - thioredoxin family protein KEGG: afr:AFE_2867 thioredoxin family protein gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2068 Acife_2069 Acife_2069 Acife_2069 2046716 2047174 + Hemerythrin HHE cation binding domain protein PFAM: Haemerythrin/HHE cation-binding motif~KEGG: afr:AFE_2868 hypothetical protein gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2069 Acife_2070 Acife_2070 Acife_2070 2047171 2047617 + Glycine cleavage system H protein KEGG: afr:AFE_2869 glycine cleavage system H protein%2C putative~HAMAP: Glycine cleavage H-protein~PFAM: Glycine cleavage H-protein gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2070 Acife_2071 Acife_2071 Acife_2071 2047807 2048220 + protein of unknown function DUF488 PFAM: Protein of unknown function DUF488~KEGG: afe:Lferr_0982 hypothetical protein gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2071 Acife_2072 Acife_2072 Acife_2072 2048250 2049017 - transcriptional regulator%2C Crp/Fnr family KEGG: afe:Lferr_0981 Crp/Fnr family transcriptional regulator~PFAM: Cyclic nucleotide-binding%3B HTH transcriptional regulator%2C Crp~SMART: Cyclic nucleotide-binding%3B HTH transcriptional regulator%2C Crp gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2072 Acife_2073 Acife_2073 Acife_2073 2049284 2050447 + nitrate transporter%2C putative KEGG: mca:MCA0589 nitrate transporter%2C putative gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2073 Acife_2074 Acife_2074 Acife_2074 2050736 2052139 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: bph:Bphy_2337 major facilitator transporter gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2074 Acife_2075 Acife_2075 Acife_2075 2052261 2053499 + hypothetical protein KEGG: rmr:Rmar_1225 hypothetical protein gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2075 Acife_2076 Acife_2076 Acife_2076 2053739 2056192 + nitrite reductase (NAD(P)H)%2C large subunit KEGG: bpr:GBP346_A0485 nitrite reductase [NAD(P)H]%2C large subunit~TIGRFAM: Nitrite reductase [NAD(P)H] large subunit%2C NirB~PFAM: Nitrite/sulphite reductase 4Fe-4S region%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B BFD-like [2Fe-2S]-binding region%3B Nitrite/sulphite reductase%2C hemoprotein beta-component%2C ferrodoxin-like gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2076 Acife_2077 Acife_2077 Acife_2077 2056203 2056523 + nitrite reductase (NAD(P)H)%2C small subunit KEGG: hdn:Hden_2952 nitrite reductase (NAD(P)H)%2C small subunit~TIGRFAM: Nitrite reductase [NAD(P)H] large subunit%2C NirD~PFAM: Rieske [2Fe-2S] iron-sulphur domain gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2077 Acife_2078 Acife_2078 Acife_2078 2056520 2059306 + molybdopterin oxidoreductase PFAM: Molybdopterin oxidoreductase%3B Molybdopterin oxidoreductase Fe4S4 region%3B Molydopterin dinucleotide-binding region%3B BFD-like [2Fe-2S]-binding region~KEGG: mei:Msip34_0344 molybdopterin oxidoreductase gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2078 Acife_2079 Acife_2079 Acife_2079 2059303 2060334 + Glycosyl transferase%2C family 3 PFAM: Glycosyl transferase%2C family 3%2C N-terminal~KEGG: dar:Daro_0815 glycosyl transferase family protein gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2079 Acife_2080 Acife_2080 Acife_2080 2060349 2061134 + uroporphyrin-III C-methyltransferase KEGG: afr:AFE_3126 uroporphyrin-III C-methyltransferase~TIGRFAM: Uroporphyrin-III C-methyltransferase%2C C-terminal~PFAM: Tetrapyrrole methylase gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2080 Acife_2081 Acife_2081 Acife_2081 2061144 2061500 + cobalamin (vitamin B12) biosynthesis CbiX protein PFAM: Cobalamin (vitamin B12) biosynthesis CbiX~KEGG: afr:AFE_3127 hypothetical protein gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2081 Acife_2082 Acife_2082 Acife_2082 2061505 2062071 + response regulator receiver and ANTAR domain protein KEGG: dar:Daro_0829 response regulator receiver:ANTAR~PFAM: ANTAR%3B Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2082 Acife_2083 Acife_2083 Acife_2083 2062481 2062753 + protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: afr:AFE_1418 hypothetical protein gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2083 Acife_2084 Acife_2084 Acife_2084 2062750 2063244 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: afr:AFE_1417 acetyltransferase%2C GNAT family gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2084 Acife_2085 Acife_2085 Acife_2085 2063363 2063932 - hypothetical protein KEGG: afr:AFE_1851 glycosyl transferase%2C group 2 family protein gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2085 Acife_2086 Acife_2086 Acife_2086 2064032 2064238 - pseudogene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2086 Acife_2087 Acife_2087 Acife_2087 2064507 2065844 - phospholipase D/Transphosphatidylase KEGG: afe:Lferr_1434 phospholipase D/transphosphatidylase~PFAM: Phospholipase D/Transphosphatidylase~SMART: Phospholipase D/Transphosphatidylase gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2087 Acife_2088 Acife_2088 Acife_2088 2066075 2067745 - diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~KEGG: tsa:AciPR4_2084 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2088 Acife_2089 Acife_2089 Acife_2089 2067742 2069223 - putative circadian clock protein%2C KaiC KEGG: har:HEAR0296 protein kinase gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2089 Acife_2090 Acife_2090 Acife_2090 2069228 2069584 - hypothetical protein manually curated gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2090 Acife_2091 Acife_2091 Acife_2091 2069637 2069951 - hypothetical protein KEGG: afr:AFE_2653 hypothetical protein gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2091 Acife_2092 Acife_2092 Acife_2092 2070025 2070486 - hypothetical protein gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2092 Acife_2093 Acife_2093 Acife_2093 2070483 2070584 - hypothetical protein gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2093 Acife_2094 Acife_2094 Acife_2094 2071120 2071587 + hypothetical protein manually curated~KEGG: sfr:Sfri_2035 hypothetical protein gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2094 Acife_2095 Acife_2095 Acife_2095 2071606 2072391 - major intrinsic protein PFAM: Major intrinsic protein~KEGG: cte:CT1472 major intrinsic protein gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2095 Acife_2096 Acife_2096 Acife_2096 2072407 2072766 - hypothetical protein KEGG: xac:XACa0008 hypothetical protein gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2096 Acife_2097 Acife_2097 Acife_2097 2072868 2073026 + hypothetical protein gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2097 Acife_2098 Acife_2098 Acife_2098 2073286 2073441 - hypothetical protein manually curated~KEGG: azl:AZL_021040 hypothetical protein gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2098 Acife_2099 Acife_2099 Acife_2099 2073482 2074096 - Di-trans-poly-cis-decaprenylcistransferase PFAM: Di-trans-poly-cis-decaprenylcistransferase-like~KEGG: chy:CHY_0237 putative undecaprenyl diphosphate synthase gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2099 Acife_2100 Acife_2100 Acife_2100 2074695 2075030 + hypothetical protein gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2100 Acife_2101 Acife_2101 Acife_2101 2075165 2075344 + hypothetical protein KEGG: afr:AFE_1624 hypothetical protein gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2101 Acife_2102 Acife_2102 Acife_2102 2075415 2075585 + CsbD family protein PFAM: CsbD-like~KEGG: nmu:Nmul_A1602 CsbD-like gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2102 Acife_2103 Acife_2103 Acife_2103 2075608 2076066 + PRC-barrel domain protein PFAM: PRC-barrel~KEGG: alv:Alvin_0926 PRC-barrel domain-containing protein gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2103 Acife_2104 Acife_2104 Acife_2104 2076546 2076791 + hypothetical protein gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2104 Acife_2105 Acife_2105 Acife_2105 2076842 2077132 + hypothetical protein KEGG: afe:Lferr_2071 hypothetical protein gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2105 Acife_2106 Acife_2106 Acife_2106 2077208 2077603 + transport-associated protein KEGG: pct:PC1_0454 transport-associated protein~PFAM: Transport-associated~SMART: Transport-associated and nodulation region%2C bacteria gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2106 Acife_2107 Acife_2107 Acife_2107 2077659 2078063 + PRC-barrel domain protein PFAM: PRC-barrel~KEGG: afr:AFE_0361 hypothetical protein gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2107 Acife_2108 Acife_2108 Acife_2108 2078088 2078444 + hypothetical protein KEGG: afr:AFE_0362 hypothetical protein gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2108 Acife_2109 Acife_2109 Acife_2109 2078927 2079379 - hypothetical protein KEGG: afr:AFE_2653 hypothetical protein gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2109 Acife_2110 Acife_2110 Acife_2110 2079560 2080084 + SNARE associated protein PFAM: SNARE associated Golgi protein~KEGG: afr:AFE_1136 membrane protein%2C DedA family gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2110 Acife_2111 Acife_2111 Acife_2111 2080087 2080206 - pseudogene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2111 Acife_2112 Acife_2112 Acife_2112 2080411 2081134 - pseudogene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2112 Acife_2113 Acife_2113 Acife_2113 2081180 2081653 - hypothetical protein KEGG: afr:AFE_0831 hypothetical protein gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2113 Acife_2114 Acife_2114 Acife_2114 2081837 2082013 - hypothetical protein gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2114 Acife_2115 Acife_2115 Acife_2115 2082035 2082391 - hypothetical protein KEGG: lch:Lcho_2219 hypothetical protein gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2115 Acife_2116 Acife_2116 Acife_2116 2082373 2082672 - hypothetical protein KEGG: mea:Mex_1p1482 hypothetical protein gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2116 Acife_2117 Acife_2117 Acife_2117 2083087 2083382 - pseudogene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2117 Acife_2118 Acife_2118 Acife_2118 2083451 2085160 - Cl- channel voltage-gated family protein KEGG: afo:Afer_0254 chloride channel core~manually curated~PFAM: Chloride channel%2C voltage gated gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2118 Acife_2119 Acife_2119 Acife_2119 2085492 2085773 - plasmid maintenance system antidote protein%2C XRE family TIGRFAM: Addiction module antidote protein%2C HigA~PFAM: Helix-turn-helix type 3~KEGG: csa:Csal_2342 XRE family plasmid maintenance system antidote protein~SMART: Helix-turn-helix type 3 gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2119 Acife_2120 Acife_2120 Acife_2120 2085783 2085899 - pseudogene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2120 Acife_2121 Acife_2121 Acife_2121 2086046 2086735 - Pirin domain protein PFAM: Pirin%2C N-terminal~KEGG: mfa:Mfla_1833 pirin-like protein gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2121 Acife_2122 Acife_2122 Acife_2122 2086983 2087528 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: afr:AFE_1007 transglycosylase%2C putative gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2122 Acife_2123 Acife_2123 Acife_2123 2087552 2088076 - hypothetical protein gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2123 Acife_2124 Acife_2124 Acife_2124 2088261 2090666 - DNA topoisomerase IV%2C A subunit TIGRFAM: DNA topoisomerase IV%2C subunit A%2C Gram-negative~PFAM: DNA topoisomerase%2C type IIA%2C subunit A or C-terminal%3B DNA gyrase/topoisomerase IV%2C subunit A%2C C-terminal beta-pinwheel~KEGG: afr:AFE_2028 DNA topoisomerase IV subunit A~SMART: DNA topoisomerase%2C type IIA%2C subunit A or C-terminal gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2124 Acife_2125 Acife_2125 Acife_2125 2090684 2092654 - DNA topoisomerase type IIA subunit B region 2 domain protein KEGG: afr:AFE_2029 DNA topoisomerase IV subunit B~PFAM: DNA topoisomerase%2C type IIA%2C subunit B%2C region 2%3B ATP-binding region%2C ATPase-like%3B DNA topoisomerase%2C type IIA%2C subunit B%2C C-terminal~SMART: DNA topoisomerase%2C type IIA%2C subunit B or N-terminal%3B ATP-binding region%2C ATPase-like gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2125 Acife_2126 Acife_2126 Acife_2126 2092972 2093808 + transcriptional regulator%2C winged helix family PFAM: Signal transduction response regulator%2C C-terminal~KEGG: afe:Lferr_2550 putative winged helix family two component transcriptional regulator gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2126 Acife_2127 Acife_2127 Acife_2127 2093857 2096901 - acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: afe:Lferr_1699 acriflavin resistance protein gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2127 Acife_2128 Acife_2128 Acife_2128 2096901 2097938 - efflux transporter%2C RND family%2C MFP subunit KEGG: afr:AFE_2036 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2128 Acife_2129 Acife_2129 Acife_2129 2097953 2099317 - outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afr:AFE_2037 outer membrane efflux protein gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2129 Acife_2130 Acife_2130 Acife_2130 2099387 2100700 - integral membrane sensor signal transduction histidine kinase KEGG: afr:AFE_2031 sensor histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2130 Acife_2131 Acife_2131 Acife_2131 2100697 2101359 - two component transcriptional regulator%2C winged helix family KEGG: afr:AFE_2032 DNA-binding response regulator~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~SMART: Signal transduction response regulator%2C receiver region gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2131 Acife_2132 Acife_2132 Acife_2132 2101447 2101758 - Propeptide PepSY amd peptidase M4 PFAM: Peptidase M4%2C propeptide%2C PepSY~KEGG: afr:AFE_2033 hypothetical protein gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2132 Acife_2133 Acife_2133 Acife_2133 2101985 2104348 - TonB-dependent receptor PFAM: TonB-dependent receptor%2C beta-barrel%3B TonB-dependent receptor%2C plug~KEGG: afr:AFE_2040 TonB-dependent receptor gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2133 Acife_2134 Acife_2134 Acife_2134 2104678 2105280 + hypothetical protein KEGG: afr:AFE_3099 hypothetical protein gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2134 Acife_2135 Acife_2135 Acife_2135 2105288 2106226 - hypothetical protein KEGG: afr:AFE_2041 hypothetical protein gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2135 Acife_2136 Acife_2136 Acife_2136 2106331 2107005 + two component heavy metal response transcriptional regulator%2C winged helix family TIGRFAM: Signal transduction response regulator%2C heavy metal response~PFAM: Signal transduction response regulator%2C receiver region%3B Signal transduction response regulator%2C C-terminal~KEGG: tin:Tint_1277 two component transcriptional regulator%2C winged helix family~SMART: Signal transduction response regulator%2C receiver region gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2136 Acife_2137 Acife_2137 Acife_2137 2106983 2108425 + heavy metal sensor signal transduction histidine kinase TIGRFAM: Signal transduction histidine kinase%2C heavy metal sensor~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain~KEGG: tin:Tint_1278 multi-sensor signal transduction histidine kinase~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2137 Acife_2138 Acife_2138 Acife_2138 2108604 2109908 + outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afr:AFE_2045 outer membrane efflux protein gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2138 Acife_2139 Acife_2139 Acife_2139 2109905 2110921 + efflux transporter%2C RND family%2C MFP subunit TIGRFAM: Secretion protein HlyD~KEGG: afr:AFE_2044 efflux transporter%2C RND family%2C MFP subunit gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2139 Acife_2140 Acife_2140 Acife_2140 2110918 2113986 + acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: afr:AFE_2043 transporter%2C AcrB/AcrD/AcrF family gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2140 Acife_2141 Acife_2141 Acife_2141 2114087 2115136 + protein of unknown function DUF6 transmembrane PFAM: Protein of unknown function DUF6%2C transmembrane~KEGG: afr:AFE_2052 hypothetical protein gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2141 Acife_2142 Acife_2142 Acife_2142 2115210 2115491 - hypothetical protein KEGG: afe:Lferr_2097 hypothetical protein gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2142 Acife_2143 Acife_2143 Acife_2143 2115561 2115731 - hypothetical protein gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2143 Acife_2144 Acife_2144 Acife_2144 2115894 2116130 - hypothetical protein gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2144 Acife_2145 Acife_2145 Acife_2145 2116207 2117490 + outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afr:AFE_1949 outer membrane heavy metal efflux protein%2C putative gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2145 Acife_2146 Acife_2146 Acife_2146 2117487 2118809 + efflux transporter%2C RND family%2C MFP subunit KEGG: afe:Lferr_0171 RND family efflux transporter MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2146 Acife_2147 Acife_2147 Acife_2147 2118802 2121912 + heavy metal efflux pump%2C CzcA family KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump~TIGRFAM: Heavy metal efflux pump CzcA~PFAM: Acriflavin resistance protein gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2147 Acife_2148 Acife_2148 Acife_2148 2121982 2123994 + Pyruvate kinase barrel PFAM: Pyruvate kinase%2C barrel~KEGG: afe:Lferr_0897 pyruvate kinase gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2148 Acife_2149 Acife_2149 Acife_2149 2123833 2124585 - CDP-diacylglycerol/serine O-phosphatidyltransferase KEGG: afr:AFE_0750 CDP-diacylglycerol--serine O-phosphatidyltransferse~TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2149 Acife_2150 Acife_2150 Acife_2150 2124582 2125244 - Phosphatidylserine decarboxylase proenzyme TIGRFAM: Phosphatidylserine decarboxylase-related protein~HAMAP: Phosphatidylserine decarboxylase proenzyme~KEGG: afr:AFE_0748 phosphatidylserine decarboxylase~PFAM: Phosphatidylserine decarboxylase-related gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2150 Acife_2151 Acife_2151 Acife_2151 2125363 2126379 - Ketol-acid reductoisomerase TIGRFAM: Acetohydroxy acid isomeroreductase~HAMAP: Ketol-acid reductoisomerase~KEGG: afr:AFE_0747 ketol-acid reductoisomerase~PFAM: Acetohydroxy acid isomeroreductase%2C catalytic%3B Acetohydroxy acid isomeroreductase C-terminal gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2151 Acife_2152 Acife_2152 Acife_2152 2126430 2126915 - acetolactate synthase%2C small subunit KEGG: afr:AFE_0746 acetolactate synthase%2C small subunit~TIGRFAM: Acetolactate synthase%2C small subunit~PFAM: Acetolactate synthase%2C small subunit%2C C-terminal%3B Amino acid-binding ACT gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2152 Acife_2153 Acife_2153 Acife_2153 2126919 2128664 - acetolactate synthase%2C large subunit%2C biosynthetic type KEGG: afr:AFE_0745 acetolactate synthase%2C large subunit%2C biosynthetic type~TIGRFAM: Acetolactate synthase%2C large subunit%2C biosynthetic~PFAM: Thiamine pyrophosphate enzyme%2C N-terminal TPP binding region%3B Thiamine pyrophosphate enzyme%2C central region%3B Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2153 Acife_2154 Acife_2154 Acife_2154 2128797 2130335 - DNA mismatch repair protein MutS domain protein KEGG: afr:AFE_0744 MutS domain V protein~PFAM: DNA mismatch repair protein MutS%2C C-terminal~SMART: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2154 Acife_2155 Acife_2155 Acife_2155 2130398 2130823 - hypothetical protein KEGG: afr:AFE_0743 hypothetical protein gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2155 Acife_2156 Acife_2156 Acife_2156 2130823 2131254 - protein of unknown function UPF0047 KEGG: afr:AFE_0742 conserved hypothetical protein TIGR00149~TIGRFAM: Uncharacterised protein family UPF0047~PFAM: Uncharacterised protein family UPF0047 gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2156 Acife_2157 Acife_2157 Acife_2157 2131235 2131801 - zinc-binding CMP/dCMP deaminase PFAM: CMP/dCMP deaminase%2C zinc-binding~KEGG: afr:AFE_0741 cytidine and deoxycytidylate deaminase family protein gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2157 Acife_2158 Acife_2158 Acife_2158 2132026 2133090 + type IV pilus assembly protein PilM TIGRFAM: Type IV pilus assembly protein PilM~KEGG: afr:AFE_0739 type IV pilus assembly protein PilM gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2158 Acife_2159 Acife_2159 Acife_2159 2133087 2133680 + Fimbrial assembly family protein PFAM: Fimbrial assembly~KEGG: afr:AFE_0738 type IV pilus biogenesis protein PilN gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2159 Acife_2160 Acife_2160 Acife_2160 2133677 2134330 + Pilus assembly protein PilO PFAM: Pilus assembly protein%2C PilO~KEGG: afr:AFE_0737 fimbrial assembly protein PilO%2C putative gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2160 Acife_2161 Acife_2161 Acife_2161 2134327 2134875 + Pilus assembly protein PilP PFAM: Pilus assembly protein PilP~KEGG: afr:AFE_0736 type 4 fimbrial biogenesis protein PilP%2C putative gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2161 Acife_2162 Acife_2162 Acife_2162 2134920 2137277 + type IV pilus secretin PilQ KEGG: afr:AFE_0735 fimbrial assembly protein PilQ%2C putative~TIGRFAM: Type IV pilus secretin PilQ~PFAM: Type II/III secretion system%3B NolW-like%3B Secretin/TonB%2C short N-terminal gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2162 Acife_2163 Acife_2163 Acife_2163 2137274 2137813 + Shikimate kinase KEGG: afr:AFE_0734 shikimate kinase~HAMAP: Shikimate kinase~PFAM: Shikimate kinase gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2163 Acife_2164 Acife_2164 Acife_2164 2137917 2139011 + 3-dehydroquinate synthase TIGRFAM: 3-dehydroquinate synthase AroB%2C subgroup~HAMAP: 3-dehydroquinate synthase~KEGG: afr:AFE_0733 3-dehydroquinate synthase~PFAM: 3-dehydroquinate synthase AroB gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2164 Acife_2165 Acife_2165 Acife_2165 2139004 2139843 + thymidylate synthase%2C flavin-dependent KEGG: afe:Lferr_0880 thymidylate synthase%2C flavin-dependent~TIGRFAM: Thymidylate synthase ThyX~PFAM: Thymidylate synthase ThyX gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2165 Acife_2166 Acife_2166 Acife_2166 2139836 2141008 + Deoxyguanosinetriphosphate triphosphohydrolase-like protein SMART: Metal-dependent phosphohydrolase%2C HD region~TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase~KEGG: afr:AFE_0731 deoxyguanosinetriphosphate triphosphohydrolase%2C putative~HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase-like protein~PFAM: Metal-dependent phosphohydrolase%2C HD region%2C subdomain gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2166 Acife_2167 Acife_2167 Acife_2167 2141145 2145572 + ferredoxin-dependent glutamate synthase PFAM: Glutamate synthase%2C central-C%3B Glutamine amidotransferase%2C class-II%3B Glutamate synthase%2C central-N%3B Glutamate synthase%2C alpha subunit%2C C-terminal~KEGG: afr:AFE_0730 glutamate synthase%2C large subunit gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2167 Acife_2168 Acife_2168 Acife_2168 2145601 2146998 + glutamate synthase%2C small subunit KEGG: afr:AFE_0729 glutamate synthase%2C small subunit~TIGRFAM: Glutamate synthase%2C NADH/NADPH%2C small subunit 2~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2168 Acife_2169 Acife_2169 Acife_2169 2147002 2148060 + Uroporphyrinogen decarboxylase TIGRFAM: Uroporphyrinogen decarboxylase HemE~HAMAP: Uroporphyrinogen decarboxylase HemE~KEGG: afr:AFE_0728 uroporphyrinogen decarboxylase~PFAM: Uroporphyrinogen decarboxylase (URO-D) gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2169 Acife_2170 Acife_2170 Acife_2170 2148057 2148959 - 1-acyl-sn-glycerol-3-phosphate acyltransferase TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase~PFAM: Phospholipid/glycerol acyltransferase~KEGG: afe:Lferr_0875 1-acyl-sn-glycerol-3-phosphate acyltransferase~SMART: Phospholipid/glycerol acyltransferase gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2170 Acife_2171 Acife_2171 Acife_2171 2148956 2149732 - hypothetical protein KEGG: afr:AFE_0726 hypothetical protein gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2171 Acife_2172 Acife_2172 Acife_2172 2150089 2150298 + hypothetical protein KEGG: afr:AFE_0725 hypothetical protein gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2172 Acife_2173 Acife_2173 Acife_2173 2150295 2151263 + alpha/beta hydrolase fold containing protein PFAM: Alpha/beta hydrolase fold-1~KEGG: afr:AFE_0724 hydrolase%2C alpha/beta hydrolase fold family gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2173 Acife_2174 Acife_2174 Acife_2174 2151260 2151631 + putative transcriptional regulator%2C ModE family PFAM: HTH transcriptional regulator%2C LysR~KEGG: afr:AFE_0723 helix-turn-helix domain protein gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2174 Acife_2175 Acife_2175 Acife_2175 2151628 2153148 + threonine dehydratase%2C biosynthetic KEGG: afr:AFE_0722 threonine ammonia-lyase%2C biosynthetic~TIGRFAM: Threonine dehydratase I~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit%3B Threonine dehydratase%2C C-terminal gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2175 Acife_2176 Acife_2176 Acife_2176 2153191 2154441 - FAD dependent oxidoreductase PFAM: FAD dependent oxidoreductase~KEGG: afr:AFE_0720 FAD-dependent oxidoreductase gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2176 Acife_2177 Acife_2177 Acife_2177 2154726 2155046 - pseudogene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2177 Acife_2178 Acife_2178 Acife_2178 2155050 2156903 - hypothetical protein KEGG: rpe:RPE_1031 hypothetical protein gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2178 Acife_2179 Acife_2179 Acife_2179 2156894 2157418 - hypothetical protein KEGG: vha:VIBHAR_05006 hypothetical protein gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2179 Acife_2180 Acife_2180 Acife_2180 2157406 2158479 - hypothetical protein KEGG: par:Psyc_0020 hypothetical protein gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2180 Acife_2181 Acife_2181 Acife_2181 2158476 2161454 - DNA methylase N-4/N-6 domain protein PFAM: DNA methylase N-4/N-6~KEGG: vei:Veis_4172 DNA methylase N-4/N-6 domain-containing protein gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2181 Acife_2182 Acife_2182 Acife_2182 2161475 2162317 - DNA-damage-inducible protein D KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2182 Acife_2183 Acife_2183 Acife_2183 2162314 2162559 - Putative addiction module component CHP02574 family protein manually curated~PFAM: Addiction module component%2C CHP02574 gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2183 Acife_2184 Acife_2184 Acife_2184 2162550 2165603 - type III restriction protein res subunit PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: vei:Veis_4168 type III restriction enzyme%2C res subunit gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2184 Acife_2185 Acife_2185 Acife_2185 2165916 2166866 - protein-export membrane protein SecF KEGG: afr:AFE_2056 protein-export membrane protein SecF~TIGRFAM: SecF protein%3B SecD/SecF/SecDF export membrane protein~PFAM: SecD/SecF/SecDF export membrane protein gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2185 Acife_2186 Acife_2186 Acife_2186 2166874 2168658 - protein-export membrane protein SecD KEGG: afr:AFE_2057 protein-export membrane protein SecD~TIGRFAM: SecD export membrane protein%3B SecD/SecF/SecDF export membrane protein~PFAM: SecD/SecF/SecDF export membrane protein gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2186 Acife_2187 Acife_2187 Acife_2187 2168669 2169004 - preprotein translocase%2C YajC subunit KEGG: afr:AFE_2058 preprotein translocase%2C YajC subunit~TIGRFAM: YajC~PFAM: YajC gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2187 Acife_2188 Acife_2188 Acife_2188 2169046 2170161 - Queuine tRNA-ribosyltransferase TIGRFAM: Queuine tRNA-ribosyltransferase%3B Queuine/other tRNA-ribosyltransferase~HAMAP: Queuine tRNA-ribosyltransferase~KEGG: afr:AFE_2059 queuine tRNA-ribosyltransferase~PFAM: Queuine/other tRNA-ribosyltransferase gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2188 Acife_2189 Acife_2189 Acife_2189 2170158 2171195 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase TIGRFAM: Queuosine biosynthesis protein~HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase~KEGG: afr:AFE_2060 S-adenosylmethionine:tRNA ribosyltransferase-isomerase~PFAM: Queuosine biosynthesis protein gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2189 Acife_2190 Acife_2190 Acife_2190 2171204 2172529 - protein of unknown function DUF21 PFAM: Protein of unknown function DUF21%3B Cystathionine beta-synthase%2C core%3B Transporter-associated region~KEGG: afr:AFE_2061 CBS domain protein gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2190 Acife_2191 Acife_2191 Acife_2191 2172568 2173161 - CBS domain containing protein PFAM: Cystathionine beta-synthase%2C core~KEGG: afr:AFE_2062 CBS domain protein gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2191 Acife_2192 Acife_2192 Acife_2192 2173225 2174439 - O-succinylhomoserine sulfhydrylase KEGG: afr:AFE_2063 O-succinylhomoserine sulfhydrylase~TIGRFAM: O-succinylhomoserine sulfhydrylase~PFAM: Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2192 Acife_2193 Acife_2193 Acife_2193 2174436 2175881 - amidophosphoribosyltransferase KEGG: afe:Lferr_1722 amidophosphoribosyltransferase~TIGRFAM: Amidophosphoribosyl transferase~PFAM: Glutamine amidotransferase%2C class-II%3B Phosphoribosyltransferase gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2193 Acife_2194 Acife_2194 Acife_2194 2175871 2176368 - Colicin V production protein PFAM: Colicin V production protein~KEGG: afr:AFE_2065 CvpA family protein gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2194 Acife_2195 Acife_2195 Acife_2195 2176365 2177654 - FolC bifunctional protein KEGG: afr:AFE_2066 folylpolyglutamate synthase/dihydrofolate synthase~TIGRFAM: Folylpolyglutamate synthetase~PFAM: Mur ligase%2C central%3B Mur ligase%2C C-terminal gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2195 Acife_2196 Acife_2196 Acife_2196 2177683 2178567 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase%2C beta subunit~HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta~KEGG: afr:AFE_2067 acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit~PFAM: Carboxyl transferase gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2196 Acife_2197 Acife_2197 Acife_2197 2178564 2179382 - Tryptophan synthase alpha chain TIGRFAM: Tryptophan synthase%2C alpha chain~HAMAP: Tryptophan synthase%2C alpha chain~KEGG: afr:AFE_2068 tryptophan synthase subunit alpha~PFAM: Tryptophan synthase%2C alpha chain gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2197 Acife_2198 Acife_2198 Acife_2198 2179379 2180578 - Tryptophan synthase beta chain TIGRFAM: Tryptophan synthase%2C beta chain~HAMAP: Tryptophan synthase beta chain~KEGG: afr:AFE_2069 tryptophan synthase subunit beta~PFAM: Pyridoxal phosphate-dependent enzyme%2C beta subunit gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2198 Acife_2199 Acife_2199 Acife_2199 2180589 2181200 - N-(5'phosphoribosyl)anthranilate isomerase PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI)~KEGG: afr:AFE_2070 N-(5'phosphoribosyl)anthranilate isomerase gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2199 Acife_2200 Acife_2200 Acife_2200 2181260 2182075 - tRNA pseudouridine synthase A TIGRFAM: Pseudouridine synthase I%2C TruA~HAMAP: Pseudouridine synthase I%2C TruA~KEGG: afr:AFE_2071 tRNA pseudouridine synthase A~PFAM: Pseudouridine synthase I%2C TruA%2C alpha/beta domain gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2200 Acife_2201 Acife_2201 Acife_2201 2182089 2184362 - Motility protein FimV TIGRFAM: Motility protein FimV%2C C-terminal%3B Motility protein FimV%2C N-terminal~KEGG: afe:Lferr_1730 Tfp pilus assembly protein FimV-like protein gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2201 Acife_2202 Acife_2202 Acife_2202 2184423 2185445 - aspartate-semialdehyde dehydrogenase KEGG: afr:AFE_2074 aspartate-semialdehyde dehydrogenase~TIGRFAM: Aspartate-semialdehyde dehydrogenase%2C bacterial~PFAM: Semialdehyde dehydrogenase%2C dimerisation region%3B Semialdehyde dehydrogenase%2C NAD-binding gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2202 Acife_2203 Acife_2203 Acife_2203 2185453 2186529 - 3-isopropylmalate dehydrogenase TIGRFAM: Isopropylmalate dehydrogenase~HAMAP: Isopropylmalate dehydrogenase~KEGG: afr:AFE_2075 3-isopropylmalate dehydrogenase~PFAM: Isocitrate/isopropylmalate dehydrogenase gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2203 Acife_2204 Acife_2204 Acife_2204 2186526 2187083 - hypothetical protein gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2204 Acife_2205 Acife_2205 Acife_2205 2187157 2187765 + Molybdopterin-guanine dinucleotide biosynthesis protein A KEGG: afe:Lferr_1733 molybdopterin-guanine dinucleotide biosynthesis protein A~TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A~HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2205 Acife_2206 Acife_2206 Acife_2206 2187762 2188256 + molybdopterin-guanine dinucleotide biosynthesis protein B KEGG: afr:AFE_2077 molybdopterin-guanine dinucleotide biosynthesis protein B~TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region~PFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2206 Acife_2207 Acife_2207 Acife_2207 2188259 2189497 + molybdenum cofactor synthesis domain protein KEGG: afr:AFE_2078 molybdopterin biosynthesis MoeA protein~TIGRFAM: Molybdenum cofactor synthesis~PFAM: MoeA%2C N-terminal region%2C domain I/II%3B Molybdopterin binding%3B MoeA%2C C-terminal%2C domain IV gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2207 Acife_2208 Acife_2208 Acife_2208 2189504 2190370 - hypothetical protein KEGG: afr:AFE_2079 endonuclease gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2208 Acife_2209 Acife_2209 Acife_2209 2190410 2191159 + metallo-beta-lactamase family protein KEGG: afr:AFE_2644 metallo-beta-lactamase family protein gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2209 Acife_2210 Acife_2210 Acife_2210 2191205 2191339 - pseudogene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2210 Acife_2211 Acife_2211 Acife_2211 2191341 2191949 - AMMECR1 domain protein KEGG: afr:AFE_0573 conserved hypothetical protein TIGR00296~TIGRFAM: AMMECR1~PFAM: AMMECR1 gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2211 Acife_2212 Acife_2212 Acife_2212 2191936 2192757 - UPF0103/Mediator of ErbB2-driven cell motility-containing protein PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo)%2C related~KEGG: afe:Lferr_0726 hypothetical protein gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2212 Acife_2213 Acife_2213 Acife_2213 2192830 2194137 - arsenical pump membrane protein KEGG: afr:AFE_2858 arsenical pump membrane protein~TIGRFAM: Arsenical pump membrane protein~PFAM: Arsenical pump membrane protein gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2213 Acife_2214 Acife_2214 Acife_2214 2194228 2194680 + regulatory protein ArsR KEGG: afr:AFE_2859 transcriptional regulator%2C ArsR~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2214 Acife_2215 Acife_2215 Acife_2215 2194576 2195718 - histidine kinase HAMP region domain protein PFAM: HAMP linker domain~KEGG: dvm:DvMF_1372 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2215 Acife_2216 Acife_2216 Acife_2216 2195746 2196225 - hypothetical protein KEGG: cho:Chro.60463 hypothetical protein gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2216 Acife_2217 Acife_2217 Acife_2217 2196889 2197932 + protein of unknown function UPF0118 PFAM: Uncharacterised protein family UPF0118~KEGG: afr:AFE_0571 hypothetical protein gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2217 Acife_2218 Acife_2218 Acife_2218 2197937 2199277 + protoporphyrinogen oxidase KEGG: afr:AFE_0570 protoporphyrinogen oxidase~TIGRFAM: Protoporphyrinogen oxidase~PFAM: Amine oxidase gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2218 Acife_2219 Acife_2219 Acife_2219 2199291 2200139 - ErfK/YbiS/YcfS/YnhG family protein PFAM: YkuD domain~KEGG: afr:AFE_0569 ErfK/YbiS/YcfS/YnhG family gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2219 Acife_2220 Acife_2220 Acife_2220 2200228 2202282 - ATP-dependent DNA helicase RecG TIGRFAM: DNA helicase%2C ATP-dependent%2C RecG~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type%3B DNA/RNA helicase%2C C-terminal~KEGG: afr:AFE_0568 ATP-dependent DNA helicase RecG~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2220 Acife_2221 Acife_2221 Acife_2221 2202284 2202499 - hypothetical protein KEGG: afr:AFE_0567 hypothetical protein gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2221 Acife_2222 Acife_2222 Acife_2222 2202501 2202890 - endoribonuclease L-PSP KEGG: afr:AFE_0566 endoribonuclease L-PSP%2C putative~TIGRFAM: YjgF-like protein~PFAM: Endoribonuclease L-PSP gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2222 Acife_2223 Acife_2223 Acife_2223 2202905 2205187 - (p)ppGpp synthetase I%2C SpoT/RelA TIGRFAM: RelA/SpoT protein~PFAM: RelA/SpoT%3B Metal-dependent phosphohydrolase%2C HD region%2C subdomain%3B TGS%3B Amino acid-binding ACT~KEGG: afe:Lferr_0719 (p)ppGpp synthetase I SpoT/RelA~SMART: Metal-dependent phosphohydrolase%2C HD region gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2223 Acife_2224 Acife_2224 Acife_2224 2205171 2205446 - DNA-directed RNA polymerase subunit omega TIGRFAM: DNA-directed RNA polymerase%2C omega subunit~HAMAP: DNA-directed RNA polymerase%2C omega subunit~KEGG: afr:AFE_0564 DNA-directed RNA polymerase%2C omega subunit~PFAM: RNA polymerase Rpb6 gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2224 Acife_2225 Acife_2225 Acife_2225 2205471 2206109 - Guanylate kinase SMART: Guanylate kinase/L-type calcium channel region~TIGRFAM: Guanylate kinase%2C sub-group~KEGG: afr:AFE_0563 guanylate kinase~HAMAP: Guanylate kinase%2C sub-group~PFAM: Guanylate kinase gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2225 Acife_2226 Acife_2226 Acife_2226 2206116 2206985 - Conserved hypothetical protein CHP00255 KEGG: afr:AFE_0562 YicC family protein~TIGRFAM: Conserved hypothetical protein CHP00255~PFAM: Domain of unknown function DUF1732%3B YicC-like%2C N-terminal gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2226 Acife_2227 Acife_2227 Acife_2227 2207205 2207567 + hypothetical protein KEGG: afr:AFE_0560 hypothetical protein gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2227 Acife_2228 Acife_2228 Acife_2228 2207571 2208053 - Redoxin domain protein PFAM: Redoxin~KEGG: afr:AFE_0047 hypothetical protein gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2228 Acife_2229 Acife_2229 Acife_2229 2208098 2210416 - von Willebrand factor type A KEGG: afr:AFE_3054 von Willebrand factor type A domain protein~PFAM: von Willebrand factor%2C type A~SMART: von Willebrand factor%2C type A gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2229 Acife_2230 Acife_2230 Acife_2230 2210469 2211272 - CbbQ protein KEGG: afr:AFE_3053 CbbQ protein gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2230 Acife_2231 Acife_2231 Acife_2231 2211425 2211781 - ribulose bisphosphate carboxylase small chain PFAM: Ribulose bisphosphate carboxylase%2C small chain~KEGG: afr:AFE_3052 ribulose bisphosphate carboxylase%2C small subunit gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2231 Acife_2232 Acife_2232 Acife_2232 2211860 2213281 - Ribulose bisphosphate carboxylase large chain KEGG: afr:AFE_3051 ribulose bisophosphate carboxylase~HAMAP: Ribulose bisphosphate carboxylase large chain~PFAM: Ribulose bisphosphate carboxylase%2C large subunit%2C C-terminal%3B Ribulose bisphosphate carboxylase%2C large subunit%2C N-terminal gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2232 Acife_2233 Acife_2233 Acife_2233 2213487 2213683 + pseudogene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2233 Acife_2234 Acife_2234 Acife_2234 2213591 2213683 + hypothetical protein gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2234 Acife_2235 Acife_2235 Acife_2235 2213710 2214744 + secretion protein HlyD family protein PFAM: Secretion protein HlyD~KEGG: afr:AFE_2861 secretion protein%2C HlyD family gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2235 Acife_2236 Acife_2236 Acife_2236 2214748 2216475 + ABC transporter-like protein KEGG: afr:AFE_2862 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2236 Acife_2237 Acife_2237 Acife_2237 2216472 2217587 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: afr:AFE_2863 ABC transporter%2C permease protein%2C putative gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2237 Acife_2238 Acife_2238 Acife_2238 2217587 2218696 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: afr:AFE_2864 ABC transporter%2C permease protein%2C putative gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2238 Acife_2239 Acife_2239 Acife_2239 2218883 2219173 + histone family protein DNA-binding protein KEGG: afr:AFE_1070 DNA-binding protein%2C HU family~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2239 Acife_2240 Acife_2240 Acife_2240 2219235 2219468 - hypothetical protein KEGG: bbr:BB4378 histone protein gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2240 Acife_2241 Acife_2241 Acife_2241 2219830 2220579 + hypothetical protein gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2241 Acife_2242 Acife_2242 Acife_2242 2220748 2220909 + hypothetical protein KEGG: ana:all2689 type I restriction enzyme%2C modification chain gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2242 Acife_2243 Acife_2243 Acife_2243 2221042 2221554 + FMN-binding pyridoxamine 5'-phosphate oxidase-related protein PFAM: Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain~KEGG: afe:Lferr_0929 pyridoxamine 5'-phosphate oxidase-like protein gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2243 Acife_2244 Acife_2244 Acife_2244 2221594 2221719 + hypothetical protein gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2244 Acife_2245 Acife_2245 Acife_2245 2221754 2221990 + SpoVT/AbrB domain-containing protein PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: bvi:Bcep1808_0145 SpoVT/AbrB domain-containing protein gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2245 Acife_2246 Acife_2246 Acife_2246 2221990 2222394 + PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: avn:Avin_36180 PilT domain-containing protein gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2246 Acife_2247 Acife_2247 Acife_2247 2222406 2222522 - transposase%2C degenerate KEGG: afr:AFE_1597 transposase%2C degenerate gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2247 Acife_2248 Acife_2248 Acife_2248 2222746 2222850 + hypothetical protein gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2248 Acife_2249 Acife_2249 Acife_2249 2222861 2222986 + hypothetical protein gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2249 Acife_2250 Acife_2250 Acife_2250 2222983 2223903 + restriction endonuclease PFAM: Restriction endonuclease%2C type IV-like%2C Mrr~KEGG: pgi:PG0968 Mrr restriction system protein gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2250 Acife_2251 Acife_2251 Acife_2251 2223893 2225065 + hypothetical protein KEGG: mmh:Mmah_1308 hypothetical protein gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2251 Acife_2252 Acife_2252 Acife_2252 2225120 2227471 + type I restriction-modification system%2C M subunit KEGG: bid:Bind_2672 N-6 DNA methylase~TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C M subunit~PFAM: DNA methylase%2C adenine-specific gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2252 Acife_2253 Acife_2253 Acife_2253 2227462 2228760 + restriction modification system DNA specificity domain-containing protein PFAM: Restriction endonuclease%2C type I%2C S subunit%2C EcoBI~KEGG: bid:Bind_2673 restriction modification system DNA specificity subunit gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2253 Acife_2254 Acife_2254 Acife_2254 2228806 2229156 + protein of unknown function DUF891 PFAM: Protein of unknown function DUF891~KEGG: afr:AFE_1384 hypothetical protein gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2254 Acife_2255 Acife_2255 Acife_2255 2229153 2229467 + hypothetical protein KEGG: afr:AFE_1383 hypothetical protein gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2255 Acife_2256 Acife_2256 Acife_2256 2229556 2229810 + stability protein StbD%2C putative KEGG: afr:AFE_0889 stability protein StbD%2C putative gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2256 Acife_2257 Acife_2257 Acife_2257 2229800 2230081 + addiction module toxin%2C RelE/StbE family KEGG: afr:AFE_0890 stability protein StbE%2C putative~TIGRFAM: Addiction module toxin%2C RelE/StbE~PFAM: Plasmid stabilisation system gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2257 Acife_2258 Acife_2258 Acife_2258 2230085 2233162 + type I site-specific deoxyribonuclease%2C HsdR family TIGRFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit~PFAM: Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit~KEGG: cyn:Cyan7425_3081 type I site-specific deoxyribonuclease%2C HsdR family~SMART: DEAD-like helicase%2C N-terminal gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2258 Acife_2259 Acife_2259 Acife_2259 2233152 2233892 + protein of unknown function DUF45 PFAM: Protein of unknown function DUF45~KEGG: afr:AFE_0760 hypothetical protein gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2259 Acife_2260 Acife_2260 Acife_2260 2233975 2234295 + pseudogene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2260 Acife_2261 Acife_2261 Acife_2261 2234873 2235859 - hypothetical protein KEGG: afr:AFE_0577 hypothetical protein gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2261 Acife_2262 Acife_2262 Acife_2262 2235927 2237381 - para-aminobenzoate synthase%2C subunit I KEGG: afe:Lferr_0730 para-aminobenzoate synthase subunit I~TIGRFAM: Para-aminobenzoate synthase%2C component I~PFAM: Chorismate binding%2C C-terminal%3B Anthranilate synthase component I%2C N-terminal gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2262 Acife_2263 Acife_2263 Acife_2263 2237484 2238821 + type I secretion outer membrane protein%2C TolC family KEGG: afr:AFE_0575 type I secretion outer membrane protein%2C TolC family~TIGRFAM: Type I secretion outer membrane protein%2C TolC~PFAM: Outer membrane efflux protein gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2263 Acife_2264 Acife_2264 Acife_2264 2238848 2240617 + integral membrane protein MviN KEGG: afr:AFE_0559 integral membrane protein MviN~TIGRFAM: Flagellin assembly%2C membrane protein MviN~PFAM: Flagellin assembly%2C membrane protein MviN gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2264 Acife_2265 Acife_2265 Acife_2265 2240610 2241065 + Protein of unknown function DUF2203 PFAM: Protein of unknown function DUF2203~KEGG: afe:Lferr_0713 hypothetical protein gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2265 Acife_2266 Acife_2266 Acife_2266 2241200 2242138 + riboflavin biosynthesis protein RibF TIGRFAM: Riboflavin kinase/FAD synthetase~KEGG: afr:AFE_0557 riboflavin biosynthesis protein RibF~PFAM: FAD synthetase%3B Riboflavin kinase gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2266 Acife_2267 Acife_2267 Acife_2267 2242141 2244954 + Isoleucyl-tRNA synthetase TIGRFAM: Isoleucyl-tRNA synthetase%2C class Ia~HAMAP: Isoleucyl-tRNA synthetase~KEGG: afr:AFE_0556 isoleucyl-tRNA synthetase gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2267 Acife_2268 Acife_2268 Acife_2268 2244954 2245412 + Lipoprotein signal peptidase TIGRFAM: Peptidase A8%2C signal peptidase II~HAMAP: Peptidase A8%2C signal peptidase II~KEGG: afr:AFE_0555 lipoprotein signal peptidase~PFAM: Peptidase A8%2C signal peptidase II gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2268 Acife_2269 Acife_2269 Acife_2269 2245660 2245878 + hypothetical protein KEGG: afr:AFE_0554 hypothetical protein gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2269 Acife_2270 Acife_2270 Acife_2270 2245954 2246700 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: gvi:gll2154 oxidoreductase gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2270 Acife_2271 Acife_2271 Acife_2271 2246697 2247272 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~KEGG: afr:AFE_0553 hypothetical protein gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2271 Acife_2272 Acife_2272 Acife_2272 2247341 2249104 - ABC transporter domain-containing protein KEGG: afr:AFE_0552 ABC transporter%2C permease/ATP-binding protein~PFAM: ABC transporter%2C N-terminal%3B ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2272 Acife_2273 Acife_2273 Acife_2273 2249231 2249713 + hypothetical protein KEGG: hna:Hneap_1146 hypothetical protein gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2273 Acife_2274 Acife_2274 Acife_2274 2249698 2250531 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~KEGG: afr:AFE_0551 hydrolase%2C carbon-nitrogen family gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2274 Acife_2275 Acife_2275 Acife_2275 2250528 2254211 - membrane protein KEGG: afe:Lferr_0705 membrane protein gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2275 Acife_2276 Acife_2276 Acife_2276 2254470 2257334 + Glutamate-ammonia-ligase adenylyltransferase KEGG: afr:AFE_0548 glutamate-ammonia-ligase adenylyltransferase~HAMAP: Glutamate-ammonia-ligase adenylyltransferase~PFAM: Glutamate-ammonia ligase adenylyltransferase%3B PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2276 Acife_2277 Acife_2277 Acife_2277 2257347 2258270 + branched-chain amino acid aminotransferase KEGG: afr:AFE_0547 branched-chain amino acid aminotransferase~TIGRFAM: Branched-chain amino acid aminotransferase I~PFAM: Aminotransferase%2C class IV gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2277 Acife_2278 Acife_2278 Acife_2278 2258275 2258487 + hypothetical protein KEGG: afr:AFE_0546 hypothetical protein gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2278 Acife_2279 Acife_2279 Acife_2279 2258508 2260337 - Thiol:disulfide interchange protein dsbD KEGG: afr:AFE_0545 thiol:disulfide interchange protein DsbD~HAMAP: Thiol:disulfide interchange protein dsbD~PFAM: Cytochrome c assembly protein%2C transmembrane region%3B Thioredoxin domain gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2279 Acife_2280 Acife_2280 Acife_2280 2260403 2260669 - hypothetical protein gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2280 Acife_2281 Acife_2281 Acife_2281 2260733 2261515 + alpha/beta hydrolase fold containing protein PFAM: Alpha/beta hydrolase fold-1~KEGG: afr:AFE_0544 hypothetical protein gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2281 Acife_2282 Acife_2282 Acife_2282 2261618 2261908 + 10 kDa chaperonin KEGG: afr:AFE_0543 co-chaperonin GroES~HAMAP: Chaperonin Cpn10%2C subgroup~PFAM: Chaperonin Cpn10 gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2282 Acife_2283 Acife_2283 Acife_2283 2261956 2263611 + 60 kDa chaperonin TIGRFAM: Chaperonin Cpn60~HAMAP: 60 kDa chaperonin~KEGG: afr:AFE_0542 chaperonin GroEL~PFAM: Chaperonin Cpn60/TCP-1 gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2283 Acife_2284 Acife_2284 Acife_2284 2263716 2264039 - hypothetical protein KEGG: ppd:Ppro_0946 hypothetical protein gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2284 Acife_2285 Acife_2285 Acife_2285 2264026 2264319 - hypothetical protein KEGG: ppd:Ppro_0945 hypothetical protein gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2285 Acife_2286 Acife_2286 Acife_2286 2264538 2265107 + phosphoribosyltransferase PFAM: Phosphoribosyltransferase~KEGG: afr:AFE_0540 adenine phosphoribosyltransferase gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2286 Acife_2287 Acife_2287 Acife_2287 2265118 2266791 + Adenylyl-sulfate kinase PFAM: Sulphate adenylyltransferase%3B Adenylylsulphate kinase%2C C-terminal~TIGRFAM: Adenylylsulphate kinase%2C C-terminal~HAMAP: Adenylyl-sulfate kinase~KEGG: afr:AFE_0539 sulfate adenylyltransferase%2C putative/adenylylsulfate kinase gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2287 Acife_2288 Acife_2288 Acife_2288 2266828 2268357 + protein of unknown function DUF814 PFAM: Protein of unknown function DUF814%3B Fibronectin-binding A%2C N-terminal~KEGG: afr:AFE_0538 hypothetical protein gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2288 Acife_2289 Acife_2289 Acife_2289 2268381 2268833 - transcriptional regulator%2C MerR family KEGG: hoh:Hoch_2836 MerR family transcriptional regulator~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2289 Acife_2290 Acife_2290 Acife_2290 2268979 2270631 - mercuric reductase KEGG: tbd:Tbd_1341 putative mercuric reductase~TIGRFAM: Mercuric reductase MerA~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Heavy metal transport/detoxification protein%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2290 Acife_2291 Acife_2291 Acife_2291 2270664 2270804 - hypothetical protein gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2291 Acife_2292 Acife_2292 Acife_2292 2271169 2273433 + oxidoreductase alpha (molybdopterin) subunit KEGG: afr:AFE_1652 oxidoreductase alpha (molybdopterin) subunit~TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit~PFAM: Molybdopterin oxidoreductase%3B Molydopterin dinucleotide-binding region gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2292 Acife_2293 Acife_2293 Acife_2293 2273408 2273704 + hypothetical protein KEGG: afr:AFE_1653 hypothetical protein gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2293 Acife_2294 Acife_2294 Acife_2294 2273674 2274513 + Protein fdhD TIGRFAM: Formate dehydrogenase%2C subunit FdhD~HAMAP: Protein fdhD~KEGG: afr:AFE_1654 formate dehydrogenase family accessory protein FdhD~PFAM: Formate dehydrogenase%2C subunit FdhD gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2294 Acife_2295 Acife_2295 Acife_2295 2274557 2275666 + S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase KEGG: gvi:glr4425 glutathione dependent formaldehyde dehydrogenase~TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase~PFAM: Alcohol dehydrogenase%2C zinc-binding%3B Alcohol dehydrogenase GroES-like gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2295 Acife_2296 Acife_2296 Acife_2296 2275783 2276565 + protein of unknown function DUF347 PFAM: Protein of unknown function DUF347~KEGG: afr:AFE_2330 hypothetical protein gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2296 Acife_2297 Acife_2297 Acife_2297 2277493 2278164 + hypothetical protein KEGG: yen:YE1183 hypothetical protein gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2297 Acife_2298 Acife_2298 Acife_2298 2278161 2278955 + hypotjetical protein KEGG: pag:PLES_13401 hypotjetical protein gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2298 Acife_2299 Acife_2299 Acife_2299 2279116 2279290 + pseudogene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2299 Acife_2300 Acife_2300 Acife_2300 2279513 2280739 + RNA-directed DNA polymerase (Reverse transcriptase) KEGG: rba:RB818 reverse transcriptase/maturase~manually curated~PFAM: RNA-directed DNA polymerase (reverse transcriptase)%3B Group II intron%2C maturase-specific gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2300 Acife_2301 Acife_2301 Acife_2301 2280752 2281075 + transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911~KEGG: tin:Tint_3219 transposase IS3/IS911 family protein gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2301 Acife_2302 Acife_2302 Acife_2302 2281072 2281980 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: tin:Tint_3218 integrase catalytic region gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2302 Acife_2303 Acife_2303 Acife_2303 2282072 2283907 + protein of unknown function DUF262 PFAM: Protein of unknown function DUF262%3B Protein of unknown function DUF1524 RloF~KEGG: drm:Dred_1817 hypothetical protein gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2303 Acife_2304 Acife_2304 Acife_2304 2283911 2284020 + pseudogene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2304 Acife_2305 Acife_2305 Acife_2305 2284077 2288036 + superfamily I DNA/RNA helicase KEGG: pna:Pnap_4606 superfamily I DNA/RNA helicase gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2305 Acife_2306 Acife_2306 Acife_2306 2288033 2290441 + Nucleotide binding protein PINc SMART: Nucleotide binding protein%2C PINc~KEGG: pna:Pnap_4605 nucleotide binding protein%2C PINc gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2306 Acife_2307 Acife_2307 Acife_2307 2290446 2291591 + hypothetical protein KEGG: pna:Pnap_4604 hypothetical protein gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2307 Acife_2308 Acife_2308 Acife_2308 2291588 2293450 + ATPase AAA-2 domain protein KEGG: pna:Pnap_4603 ATPase~PFAM: ATPase associated with various cellular activities%2C AAA-2~SMART: ATPase%2C AAA+ type%2C core gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2308 Acife_2309 Acife_2309 Acife_2309 2293455 2294039 + radical SAM domain-containing protein KEGG: pna:Pnap_4602 radical SAM domain-containing protein gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2309 Acife_2310 Acife_2310 Acife_2310 2294261 2295289 + Radical SAM domain protein PFAM: Radical SAM~KEGG: pau:PA14_03340 hypothetical protein gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2310 Acife_2311 Acife_2311 Acife_2311 2295286 2296152 + histidinol phosphate phosphatase HisJ family TIGRFAM: Histidinol phosphate phosphatase%2C HisJ~PFAM: PHP%2C C-terminal~KEGG: pau:PA14_03330 hypothetical protein~SMART: Polymerase/histidinol phosphatase%2C N-terminal gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2311 Acife_2312 Acife_2312 Acife_2312 2296149 2297279 + hypothetical protein KEGG: pau:PA14_03320 hypothetical protein gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2312 Acife_2313 Acife_2313 Acife_2313 2297831 2299354 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: bxe:Bxe_A1791 putative transposase catalytic subunit gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2313 Acife_2314 Acife_2314 Acife_2314 2299366 2300151 + IstB domain protein ATP-binding protein KEGG: afr:AFE_2413 transposase%2C degenerate~PFAM: IstB-like ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2314 Acife_2315 Acife_2315 Acife_2315 2300227 2300472 - hypothetical protein KEGG: pau:PA14_03310 hypothetical protein gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2315 Acife_2316 Acife_2316 Acife_2316 2300714 2302882 + hypothetical protein KEGG: pau:PA14_03310 hypothetical protein gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2316 Acife_2317 Acife_2317 Acife_2317 2302908 2304122 + transposase IS204/IS1001/IS1096/IS1165 family protein PFAM: Transposase%2C IS204/IS1001/IS1096/IS1165~KEGG: cph:Cpha266_2270 transposase%2C IS204/IS1001/IS1096/IS1165 family protein gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2317 Acife_2318 Acife_2318 Acife_2318 2304667 2305104 + hypothetical protein gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2318 Acife_2319 Acife_2319 Acife_2319 2305202 2306905 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: eba:p2A221 transposase gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2319 Acife_2320 Acife_2320 Acife_2320 2307076 2307342 - hypothetical protein gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2320 Acife_2321 Acife_2321 Acife_2321 2307439 2308713 - hypothetical protein KEGG: rpx:Rpdx1_2916 hypothetical protein gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2321 Acife_2322 Acife_2322 Acife_2322 2308847 2310154 - hypothetical protein KEGG: afe:Lferr_1430 hypothetical protein gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2322 Acife_2323 Acife_2323 Acife_2323 2310449 2311774 - RNA-directed DNA polymerase (Reverse transcriptase) PFAM: RNA-directed DNA polymerase (reverse transcriptase)%3B Group II intron%2C maturase-specific~KEGG: dar:Daro_3822 RNA-directed DNA polymerase (reverse transcriptase) gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2323 Acife_2324 Acife_2324 Acife_2324 2312603 2313124 + hypothetical protein gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2324 Acife_2325 Acife_2325 Acife_2325 2313121 2315640 + hypothetical protein gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2325 Acife_2326 Acife_2326 Acife_2326 2315627 2316175 + PilT protein domain protein PFAM: PilT protein%2C N-terminal gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2326 Acife_2327 Acife_2327 Acife_2327 2316354 2318744 + pseudogene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2327 Acife_2328 Acife_2328 Acife_2328 2316572 2318276 - pseudogene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2328 Acife_2329 Acife_2329 Acife_2329 2318768 2319790 + Integrase catalytic region KEGG: sbl:Sbal_4350 integrase catalytic subunit~manually curated~PFAM: Integrase%2C catalytic core gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2329 Acife_2330 Acife_2330 Acife_2330 2319952 2321475 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: afe:Lferr_1749 hypothetical protein gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2330 Acife_2331 Acife_2331 Acife_2331 2321420 2321563 - hypothetical protein gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2331 Acife_2332 Acife_2332 Acife_2332 2321556 2322533 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: lch:Lcho_0776 integrase family protein gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2332 Acife_2333 Acife_2333 Acife_2333 2322530 2322820 - pseudogene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2333 Acife_2334 Acife_2334 Acife_2334 2323336 2324496 + hypothetical protein KEGG: afr:AFE_2785 hypothetical protein gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2334 Acife_2335 Acife_2335 Acife_2335 2324613 2325148 + pseudogene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2335 Acife_2336 Acife_2336 Acife_2336 2325494 2325703 + pseudogene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2336 Acife_2337 Acife_2337 Acife_2337 2325848 2326897 + Alcohol dehydrogenase GroES domain protein PFAM: Alcohol dehydrogenase GroES-like%3B Alcohol dehydrogenase%2C zinc-binding~KEGG: afr:AFE_0846 alcohol dehydrogenase%2C zinc-containing gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2337 Acife_2338 Acife_2338 Acife_2338 2327248 2328423 + Rieske (2Fe-2S) iron-sulfur domain-containing protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2338 Acife_2339 Acife_2339 Acife_2339 2328816 2329595 + beta-lactamase-like protein KEGG: tcx:Tcr_1803 beta-lactamase-like gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2339 Acife_2340 Acife_2340 Acife_2340 2329625 2330365 + Creatininase PFAM: Creatininase~KEGG: dar:Daro_0078 creatininase gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2340 Acife_2341 Acife_2341 Acife_2341 2330404 2331765 + glutamine synthetase%2C type III KEGG: slt:Slit_0094 glutamine synthetase%2C type III~TIGRFAM: Glutamine synthetase%2C type III~PFAM: Glutamine synthetase%2C catalytic region gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2341 Acife_2342 Acife_2342 Acife_2342 2331848 2332231 + lactoylglutathione lyase KEGG: bav:BAV0701 lactoylglutathione lyase~TIGRFAM: Glyoxalase I~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2342 Acife_2343 Acife_2343 Acife_2343 2332523 2333563 + transposase IS116/IS110/IS902 family protein PFAM: Transposase%2C IS116/IS110/IS902~KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2343 Acife_2344 Acife_2344 Acife_2344 2333648 2333863 + hypothetical protein KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2344 Acife_2345 Acife_2345 Acife_2345 2333881 2334338 - pseudogene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2345 Acife_2346 Acife_2346 Acife_2346 2334701 2335465 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: pth:PTH_2894 dehydrogenases with different specificities gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2346 Acife_2347 Acife_2347 Acife_2347 2335744 2336946 - Rieske (2Fe-2S) iron-sulfur domain-containing protein PFAM: Rieske [2Fe-2S] iron-sulphur domain~KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2347 Acife_2348 Acife_2348 Acife_2348 2337480 2338520 + transposase IS116/IS110/IS902 family protein PFAM: Transposase%2C IS116/IS110/IS902~KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2348 Acife_2349 Acife_2349 Acife_2349 2338871 2339200 + ISAfe4%2C tranposase orf1 KEGG: afr:AFE_1709 ISAfe4%2C tranposase orf1 gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2349 Acife_2350 Acife_2350 Acife_2350 2339191 2339538 + IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2 like~KEGG: afe:Lferr_1327 IS66 Orf2 family protein gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2350 Acife_2351 Acife_2351 Acife_2351 2339588 2341220 + pseudogene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2351 Acife_2352 Acife_2352 Acife_2352 2341294 2342007 + pseudogene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2352 Acife_2353 Acife_2353 Acife_2353 2342065 2342274 - pseudogene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2353 Acife_2354 Acife_2354 Acife_2354 2342395 2343351 - protein of unknown function DUF6 transmembrane PFAM: Protein of unknown function DUF6%2C transmembrane~KEGG: amv:ACMV_06240 hypothetical protein gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2354 Acife_2355 Acife_2355 Acife_2355 2343638 2344534 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2355 Acife_2356 Acife_2356 Acife_2356 2344775 2345707 - ferredoxin PFAM: Ferredoxin%3B Oxidoreductase FAD/NAD(P)-binding~KEGG: bur:Bcep18194_C7699 ferredoxin gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2356 Acife_2357 Acife_2357 Acife_2357 2345963 2346721 - pseudogene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2357 Acife_2358 Acife_2358 Acife_2358 2346867 2347172 - pseudogene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2358 Acife_2359 Acife_2359 Acife_2359 2347487 2348056 - NAD(P)H dehydrogenase (quinone) PFAM: Flavodoxin-like fold~KEGG: gmc:GY4MC1_1805 NAD(P)H dehydrogenase (quinone) gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2359 Acife_2360 Acife_2360 Acife_2360 2348158 2349603 - permease for cytosine/purines uracil thiamine allantoin PFAM: Permease%2C cytosine/purines%2C uracil%2C thiamine%2C allantoin~KEGG: apt:APA01_41980 cytosine/purines/uracil/thiamine/allantoin transporter gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2360 Acife_2361 Acife_2361 Acife_2361 2350250 2351278 + transposase IS116/IS110/IS902 family protein PFAM: Transposase%2C IS116/IS110/IS902%3B Transposase%2C IS111A/IS1328/IS1533~KEGG: afr:AFE_3183 ISAfe1%2C transposase gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2361 Acife_2362 Acife_2362 Acife_2362 2351514 2352748 - pseudogene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2362 Acife_2363 Acife_2363 Acife_2363 2353010 2353777 - hypothetical protein gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2363 Acife_2364 Acife_2364 Acife_2364 2354011 2354292 + hypothetical protein gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2364 Acife_2365 Acife_2365 Acife_2365 2355032 2355931 + DNA-binding prophage protein KEGG: sea:SeAg_B2096 DNA-binding prophage protein gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2365 Acife_2366 Acife_2366 Acife_2366 2356272 2359943 - SMC domain protein PFAM: RecF/RecN/SMC protein%2C N-terminal~KEGG: neu:NE1392 ABC transporter ATPase gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2366 Acife_2367 Acife_2367 Acife_2367 2359955 2361184 - nuclease SbcCD%2C D subunit KEGG: maq:Maqu_0567 nuclease SbcCD%2C D subunit~TIGRFAM: Exonuclease SbcD~PFAM: Metallophosphoesterase gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2367 Acife_2368 Acife_2368 Acife_2368 2361379 2362011 + protein of unknown function DUF1819 putative inner membrane PFAM: Protein of unknown function DUF1819%2C putative inner membrane~KEGG: cpb:Cphamn1_1682 hypothetical protein gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2368 Acife_2369 Acife_2369 Acife_2369 2362008 2362664 + Domain of unknown function DUF1788 PFAM: Protein of unknown function DUF1788~KEGG: cpb:Cphamn1_1681 hypothetical protein gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2369 Acife_2370 Acife_2370 Acife_2370 2362677 2366216 + hypothetical protein KEGG: cpb:Cphamn1_1680 hypothetical protein gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2370 Acife_2371 Acife_2371 Acife_2371 2366230 2368053 + hypothetical protein KEGG: cpb:Cphamn1_1677 hypothetical protein gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2371 Acife_2372 Acife_2372 Acife_2372 2368053 2369501 + putative transcriptional regulator PFAM: ATPase associated with various cellular activities%2C AAA-4~KEGG: gca:Galf_0893 putative transcriptional regulator gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2372 Acife_2373 Acife_2373 Acife_2373 2369501 2371273 + hypothetical protein KEGG: cpb:Cphamn1_1677 hypothetical protein gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2373 Acife_2374 Acife_2374 Acife_2374 2371294 2372460 + SMC domain protein PFAM: RecF/RecN/SMC protein%2C N-terminal~KEGG: ddc:Dd586_0435 SMC domain-containing protein gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2374 Acife_2375 Acife_2375 Acife_2375 2372457 2373113 + hypothetical protein KEGG: ddc:Dd586_0434 hypothetical protein gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2375 Acife_2376 Acife_2376 Acife_2376 2373113 2375620 + Conserved hypothetical protein CHP02687 KEGG: dvu:DVU2020 hypothetical protein~TIGRFAM: Conserved hypothetical protein CHP02687~PFAM: PglZ domain gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2376 Acife_2377 Acife_2377 Acife_2377 2375643 2377751 + Conserved hypothetical protein CHP02688 TIGRFAM: Conserved hypothetical protein CHP02688~KEGG: cpb:Cphamn1_1675 hypothetical protein gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2377 Acife_2378 Acife_2378 Acife_2378 2377821 2378024 - hypothetical protein KEGG: afe:Lferr_2037 hypothetical protein gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2378 Acife_2379 Acife_2379 Acife_2379 2378111 2378416 - hypothetical protein gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2379 Acife_2380 Acife_2380 Acife_2380 2378654 2379049 - pseudogene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2380 Acife_2381 Acife_2381 Acife_2381 2379046 2380098 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: dds:Ddes_0438 hypothetical protein gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2381 Acife_2382 Acife_2382 Acife_2382 2380341 2382230 - RNA polymerase%2C sigma 70 subunit%2C RpoD KEGG: afe:Lferr_1970 RNA polymerase sigma-70 subunit RpoD~TIGRFAM: RNA polymerase sigma factor RpoD%2C C-terminal%3B RNA polymerase sigma-70~PFAM: RNA polymerase sigma factor 70%2C non-essential region%3B RNA polymerase sigma factor 70%2C region 1.1%3B RNA polymerase sigma-70 region 1.2%3B RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 3%3B RNA polymerase sigma-70 region 4 gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2382 Acife_2383 Acife_2383 Acife_2383 2382342 2384084 - DNA primase KEGG: afr:AFE_2337 DNA primase~TIGRFAM: DNA primase%2C DnaG~PFAM: DNA primase%2C catalytic core%2C N-terminal%3B Zinc finger%2C CHC2-type%3B Toprim domain%3B DNA primase%2C DnaB-helicase binding domain gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2383 Acife_2384 Acife_2384 Acife_2384 2384088 2386424 - DNA mismatch repair protein MutS domain protein KEGG: afr:AFE_2338 MutS2 family protein~PFAM: DNA mismatch repair protein MutS%2C C-terminal%3B Smr protein/MutS2 C-terminal~SMART: DNA mismatch repair protein MutS%2C C-terminal%3B DNA mismatch repair protein MutS%2C core%3B Smr protein/MutS2 C-terminal gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2384 Acife_2385 Acife_2385 Acife_2385 2386424 2386870 - GatB/YqeY domain protein KEGG: afr:AFE_2339 GatB/YqeY domain protein gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2385 Acife_2386 Acife_2386 Acife_2386 2386870 2387154 - 30S ribosomal protein S21 TIGRFAM: Ribosomal protein S21~HAMAP: Ribosomal protein S21~KEGG: afr:AFE_2340 30S ribosomal protein S21~PFAM: Ribosomal protein S21 gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2386 Acife_2387 Acife_2387 Acife_2387 2387376 2388233 + RNA polymerase%2C sigma 32 subunit%2C RpoH KEGG: afr:AFE_2342 RNA polymerase sigm-70 factor family~TIGRFAM: RNA polymerase sigma-70~PFAM: RNA polymerase sigma-70 region 2%3B RNA polymerase sigma-70 region 4 gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2387 Acife_2388 Acife_2388 Acife_2388 2388200 2388823 - Nucleoside-triphosphatase rdgB TIGRFAM: Ham1-like protein~HAMAP: Nucleoside-triphosphatase rdgB~KEGG: afr:AFE_2341 non-canonical purine NTP pyrophosphatase%2C RdgB/HAM1 family~PFAM: Ham1-like protein gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2388 Acife_2389 Acife_2389 Acife_2389 2388820 2389548 - Ribonuclease PH TIGRFAM: Ribonuclease phosphorolytic%2C bacterial-type~HAMAP: Ribonuclease phosphorolytic%2C bacterial-type~KEGG: afr:AFE_2343 ribonuclease PH~PFAM: Exoribonuclease%2C phosphorolytic domain 1%3B Exoribonuclease%2C phosphorolytic domain 2 gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2389 Acife_2390 Acife_2390 Acife_2390 2389678 2390172 + cyclic nucleotide-binding protein KEGG: afr:AFE_2344 cyclic nucleotide-binding domain protein~PFAM: Cyclic nucleotide-binding~SMART: Cyclic nucleotide-binding gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2390 Acife_2391 Acife_2391 Acife_2391 2390182 2390736 - peptidase S16 lon domain protein KEGG: afr:AFE_2345 ATP-dependent protease La domain protein~PFAM: Peptidase S16%2C lon N-terminal~SMART: Peptidase S16%2C lon N-terminal gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2391 Acife_2392 Acife_2392 Acife_2392 2390762 2391919 + oxygen-independent coproporphyrinogen III oxidase TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase~PFAM: HemN%2C C-terminal%3B Radical SAM~KEGG: afr:AFE_2346 oxygen-independent coproporphyrinogen III oxidase%2C putative~SMART: Elongator protein 3/MiaB/NifB gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2392 Acife_2393 Acife_2393 Acife_2393 2391934 2392245 - hypothetical protein KEGG: afr:AFE_2347 hypothetical protein gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2393 Acife_2394 Acife_2394 Acife_2394 2392269 2393063 + pseudouridine synthase Rsu SMART: RNA-binding S4~manually curated~KEGG: afe:Lferr_1982 pseudouridine synthase~TIGRFAM: Pseudouridine synthase%2C RsuA and RluB/E/F~PFAM: Pseudouridine synthase%2C RsuA and RluB/C/D/E/F%3B RNA-binding S4 gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2394 Acife_2395 Acife_2395 Acife_2395 2393295 2394821 + drug resistance transporter%2C EmrB/QacA subfamily KEGG: afr:AFE_2349 multidrug resistance protein~TIGRFAM: Drug resistance transporter EmrB/QacA subfamily~PFAM: Major facilitator superfamily MFS-1 gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2395 Acife_2396 Acife_2396 Acife_2396 2394832 2395785 - peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 PFAM: Peptidase S11%2C D-alanyl-D-alanine carboxypeptidase A~KEGG: afr:AFE_2350 D-alanyl-D-alanine carboxypeptidase%2C putative gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2396 Acife_2397 Acife_2397 Acife_2397 2395952 2396713 + protein of unknown function DUF81 PFAM: Protein of unknown function DUF81~KEGG: afr:AFE_2351 hypothetical protein gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2397 Acife_2398 Acife_2398 Acife_2398 2396729 2397736 + Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: afr:AFE_2352 hypothetical protein gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2398 Acife_2399 Acife_2399 Acife_2399 2398130 2398336 + pseudogene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2399 Acife_2400 Acife_2400 Acife_2400 2398518 2398943 - PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: lch:Lcho_4334 PilT domain-containing protein gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2400 Acife_2401 Acife_2401 Acife_2401 2398940 2399188 - Arc domain-/DNA-binding domain-containing protein KEGG: nwa:Nwat_2445 Arc domain-/DNA-binding domain-containing protein gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2401 Acife_2402 Acife_2402 Acife_2402 2399396 2399558 - pseudogene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2402 Acife_2403 Acife_2403 Acife_2403 2399853 2400176 + hypothetical protein KEGG: avn:Avin_52410 hypothetical protein gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2403 Acife_2404 Acife_2404 Acife_2404 2400243 2402981 + type III restriction protein res subunit KEGG: geo:Geob_2869 type III restriction protein res subunit~PFAM: Restriction endonuclease%2C type I%2C R subunit/Type III%2C Res subunit%3B Restriction endonuclease%2C type I%2C EcoRI%2C R subunit/Type III%2C Res subunit%2C N-terminal%3B DNA/RNA helicase%2C C-terminal~SMART: DEAD-like helicase%2C N-terminal gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2404 Acife_2405 Acife_2405 Acife_2405 2403026 2404114 + hypothetical protein KEGG: mca:MCA1889 hypothetical protein gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2405 Acife_2406 Acife_2406 Acife_2406 2404212 2408063 - phosphoribosylformylglycinamidine synthase KEGG: afr:AFE_2354 phosphoribosylformylglycinamidine synthase~TIGRFAM: Phosphoribosylformylglycinamidine synthase%2C eukaryote/proteobacteria~PFAM: AIR synthase related protein%2C C-terminal%3B AIR synthase related protein gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2406 Acife_2407 Acife_2407 Acife_2407 2408134 2408856 - Phosphoribosylaminoimidazole-succinocarboxamide synthase TIGRFAM: SAICAR synthetase~HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase~KEGG: afr:AFE_2355 phosphoribosylaminoimidazole-succinocarboxamide synthase~PFAM: SAICAR synthetase gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2407 Acife_2408 Acife_2408 Acife_2408 2408853 2410160 - adenylosuccinate lyase KEGG: afr:AFE_2356 adenylosuccinate lyase~TIGRFAM: Adenylosuccinate lyase~PFAM: Fumarate lyase%3B Adenylosuccinate lyase%2C C-terminal gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2408 Acife_2409 Acife_2409 Acife_2409 2410157 2411284 - lipoprotein%2C putative KEGG: afr:AFE_2357 lipoprotein%2C putative gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2409 Acife_2410 Acife_2410 Acife_2410 2411322 2412197 - Dihydrodipicolinate synthase TIGRFAM: Dihydrodipicolinate synthase subfamily~HAMAP: Dihydrodipicolinate synthase~KEGG: afr:AFE_2358 dihydrodipicolinate synthase~PFAM: Dihydrodipicolinate synthetase gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2410 Acife_2411 Acife_2411 Acife_2411 2412480 2413133 - channel protein%2C hemolysin III family KEGG: afr:AFE_2360 channel protein%2C hemolysin III family~TIGRFAM: HylII~PFAM: Hly-III related gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2411 Acife_2412 Acife_2412 Acife_2412 2413198 2414529 - cell wall hydrolase/autolysin KEGG: afr:AFE_2361 N-acetylmuramoyl-L-alanine amidase%2C putative~PFAM: Cell wall hydrolase/autolysin%2C catalytic~SMART: Cell wall hydrolase/autolysin%2C catalytic gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2412 Acife_2413 Acife_2413 Acife_2413 2414574 2414999 - thioredoxin KEGG: afr:AFE_2362 thioredoxin~TIGRFAM: Thioredoxin~PFAM: Thioredoxin domain gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2413 Acife_2414 Acife_2414 Acife_2414 2415036 2415320 - glutaredoxin 3 KEGG: afr:AFE_2363 glutaredoxin 3~TIGRFAM: Glutaredoxin%2C GrxC~PFAM: Glutaredoxin gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2414 Acife_2415 Acife_2415 Acife_2415 2415323 2415748 - Rhodanese-like protein KEGG: afr:AFE_2364 rhodanese-like domain protein~PFAM: Rhodanese-like~SMART: Rhodanese-like gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2415 Acife_2416 Acife_2416 Acife_2416 2415752 2415973 - hypothetical protein KEGG: afr:AFE_2365 hypothetical protein gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2416 Acife_2417 Acife_2417 Acife_2417 2415980 2419255 - acriflavin resistance protein PFAM: Acriflavin resistance protein~KEGG: afr:AFE_2366 transporter%2C AcrB/AcrD/AcrF family gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2417 Acife_2418 Acife_2418 Acife_2418 2419248 2420330 - efflux transporter%2C RND family%2C MFP subunit KEGG: afr:AFE_2367 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: Secretion protein HlyD~PFAM: Secretion protein HlyD gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2418 Acife_2419 Acife_2419 Acife_2419 2420327 2421748 - outer membrane efflux protein PFAM: Outer membrane efflux protein~KEGG: afr:AFE_2368 outer membrane efflux protein gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2419 Acife_2420 Acife_2420 Acife_2420 2421858 2422088 + hypothetical protein gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2420 Acife_2421 Acife_2421 Acife_2421 2422016 2422318 - regulatory protein ArsR KEGG: afr:AFE_2369 transcriptional regulator%2C ArsR family~PFAM: HTH transcriptional regulator%2C ArsR~SMART: HTH transcriptional regulator%2C ArsR gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2421 Acife_2422 Acife_2422 Acife_2422 2422618 2424090 - UbiD family decarboxylase KEGG: afr:AFE_2383 3-octaprenyl-4-hydroxybenzoate carboxy-lyase~TIGRFAM: Carboxylyase-related~PFAM: Carboxylyase-related gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2422 Acife_2423 Acife_2423 Acife_2423 2424115 2424987 - hypothetical protein KEGG: afr:AFE_2384 hypothetical protein gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2423 Acife_2424 Acife_2424 Acife_2424 2425000 2425392 - Sterol-binding domain protein PFAM: Sterol-binding~KEGG: afr:AFE_2385 SCP-2 sterol transfer family protein gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2424 Acife_2425 Acife_2425 Acife_2425 2425510 2426259 - UBA/THIF-type NAD/FAD binding protein PFAM: UBA/THIF-type NAD/FAD binding fold~KEGG: afr:AFE_2386 HesA/MoeB/ThiF family protein gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2425 Acife_2426 Acife_2426 Acife_2426 2426256 2427026 - hydrolase%2C TatD family KEGG: afr:AFE_2387 hydrolase%2C TatD family~TIGRFAM: Deoxyribonuclease%2C TatD Mg-dependent%2C prokaryote~PFAM: Deoxyribonuclease%2C TatD-related gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2426 Acife_2427 Acife_2427 Acife_2427 2427200 2428429 + Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family KEGG: afr:AFE_2388 2-octaprenyl-6-methoxyphenol hydroxylase~TIGRFAM: Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6~PFAM: Monooxygenase%2C FAD-binding gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2427 Acife_2428 Acife_2428 Acife_2428 2428419 2429606 + Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 family KEGG: afr:AFE_2389 2-octaprenyl-6-methoxyphenol hydroxylase~TIGRFAM: Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6~PFAM: FAD dependent oxidoreductase gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2428 Acife_2429 Acife_2429 Acife_2429 2429618 2429881 + protein of unknown function DUF526 PFAM: Protein of unknown function DUF526~KEGG: afr:AFE_2390 hypothetical protein gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2429 Acife_2430 Acife_2430 Acife_2430 2429885 2431396 + Mg chelatase%2C subunit ChlI TIGRFAM: Mg chelatase-related protein~PFAM: Magnesium chelatase%2C ChlI subunit~KEGG: tbd:Tbd_0237 Mg chelatase-related protein~SMART: ATPase%2C AAA+ type%2C core gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2430 Acife_2431 Acife_2431 Acife_2431 2431522 2432979 - Catalase related subgroup domain-containing protein PFAM: Catalase related subgroup%3B Catalase-related immune responsive~KEGG: hau:Haur_0032 catalase gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2431 Acife_2432 Acife_2432 Acife_2432 2433149 2433592 - Sel1 domain protein repeat-containing protein PFAM: Sel1-like~KEGG: afr:AFE_2513 hypothetical protein gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2432 Acife_2433 Acife_2433 Acife_2433 2433617 2435236 - Peptide chain release factor 3 TIGRFAM: Peptide chain release factor 3%3B Small GTP-binding protein~HAMAP: Peptide chain release factor 3~KEGG: afr:AFE_2514 peptide chain release factor 3~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2433 Acife_2434 Acife_2434 Acife_2434 2435243 2435713 - ribosomal-protein-alanine acetyltransferase KEGG: afr:AFE_2515 ribosomal-protein-alanine acetyltransferase~TIGRFAM: Ribosomal-protein-alanine acetyltransferase~PFAM: GCN5-related N-acetyltransferase gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2434 Acife_2435 Acife_2435 Acife_2435 2435710 2436384 - universal protein YeaZ KEGG: afr:AFE_2516 hypothetical protein~TIGRFAM: universal protein YeaZ~PFAM: Peptidase M22%2C glycoprotease gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2435 Acife_2436 Acife_2436 Acife_2436 2436384 2438309 - helicase c2 SMART: Helicase%2C ATP-dependent%2C c2 type%3B DEAD-like helicase%2C N-terminal~KEGG: afr:AFE_2517 ATP-dependent helicase%2C DEXD family gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2436 Acife_2437 Acife_2437 Acife_2437 2438379 2438735 + hypothetical protein KEGG: afr:AFE_2519 hypothetical protein gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2437 Acife_2438 Acife_2438 Acife_2438 2438844 2439038 + hypothetical protein KEGG: afr:AFE_1853 hypothetical protein gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2438 Acife_2439 Acife_2439 Acife_2439 2439025 2439273 + hypothetical protein manually curated~KEGG: afr:AFE_1852 hypothetical protein gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2439 Acife_2440 Acife_2440 Acife_2440 2439379 2440479 - NLP/P60 protein PFAM: NLP/P60~KEGG: afr:AFE_2520 NLP/P60 family protein gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2440 Acife_2441 Acife_2441 Acife_2441 2440588 2440737 - hypothetical protein gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2441 Acife_2442 Acife_2442 Acife_2442 2440898 2441542 + hypothetical protein KEGG: tin:Tint_0706 hypothetical protein gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2442 Acife_2443 Acife_2443 Acife_2443 2441638 2442888 + Carbohydrate-selective porin OprB PFAM: Carbohydrate-selective porin OprB~KEGG: afr:AFE_2522 carbohydrate-selective porin%2C OprB family gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2443 Acife_2444 Acife_2444 Acife_2444 2442906 2443172 + FeoA family protein PFAM: Ferrous iron transporter%2C FeoA subunit~KEGG: afr:AFE_2523 FeoA family protein gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2444 Acife_2445 Acife_2445 Acife_2445 2443169 2445517 + ferrous iron transport protein B KEGG: afe:Lferr_2152 ferrous iron transport protein B~TIGRFAM: Ferrous iron transport protein B%3B Small GTP-binding protein~PFAM: GTP-binding protein%2C HSR1-related%3B Ferrous iron transport protein B%2C N-terminal%3B Nucleoside recognition%3B Ferrous iron transport protein B%2C C-terminal gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2445 Acife_2446 Acife_2446 Acife_2446 2445514 2445846 + protein of unknown function DUF1920 PFAM: FeoC like transcriptional regulator~KEGG: afr:AFE_2525 hypothetical protein gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2446 Acife_2447 Acife_2447 Acife_2447 2446146 2447018 + N-carbamoylputrescine amidase KEGG: afr:AFE_2526 hydrolase%2C carbon-nitrogen family~TIGRFAM: N-carbamoylputrescine amidase~PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2447 Acife_2448 Acife_2448 Acife_2448 2447011 2447754 + peptidase C26 PFAM: Peptidase C26~KEGG: afr:AFE_2528 glutamine amidotransferase%2C class I gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2448 Acife_2449 Acife_2449 Acife_2449 2447751 2448398 - SNARE associated protein PFAM: SNARE associated Golgi protein~KEGG: afr:AFE_2527 membrane protein%2C DedA family gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2449 Acife_2450 Acife_2450 Acife_2450 2448430 2448786 - hypothetical protein KEGG: afr:AFE_2529 hypothetical protein gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2450 Acife_2451 Acife_2451 Acife_2451 2448783 2449535 - hypothetical protein KEGG: afr:AFE_2530 hypothetical protein gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2451 Acife_2452 Acife_2452 Acife_2452 2449537 2450463 - transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: afr:AFE_2531 transcriptional regulator%2C LysR family gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2452 Acife_2453 Acife_2453 Acife_2453 2450549 2451151 + hypothetical protein KEGG: afr:AFE_2532 hypothetical protein gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2453 Acife_2454 Acife_2454 Acife_2454 2451173 2452318 - aldo/keto reductase PFAM: Aldo/keto reductase~KEGG: afr:AFE_2533 oxidoreductase%2C aldo/keto reductase family gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2454 Acife_2455 Acife_2455 Acife_2455 2452315 2453529 - histone deacetylase superfamily PFAM: Histone deacetylase superfamily~KEGG: afe:Lferr_2162 histone deacetylase superfamily gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2455 Acife_2456 Acife_2456 Acife_2456 2453526 2456024 - von Willebrand factor type A SMART: von Willebrand factor%2C type A~KEGG: afe:Lferr_2163 von Willebrand factor type A gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2456 Acife_2457 Acife_2457 Acife_2457 2456034 2456864 - ATPase associated with various cellular activities AAA_5 PFAM: ATPase associated with various cellular activities%2C AAA-5%3B CbbQ/NirQ/NorQ C-terminal~KEGG: afr:AFE_2536 CbbQ/NirQ/NorQ/GpvN family protein gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2457 Acife_2458 Acife_2458 Acife_2458 2456861 2457262 - hypothetical protein KEGG: afr:AFE_2537 hypothetical protein gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2458 Acife_2459 Acife_2459 Acife_2459 2457388 2457711 + hypothetical protein KEGG: afe:Lferr_2166 hypothetical protein gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2459 Acife_2460 Acife_2460 Acife_2460 2457770 2458147 - hypothetical protein KEGG: afe:Lferr_2167 hypothetical protein gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2460 Acife_2461 Acife_2461 Acife_2461 2458199 2459206 - biotin/lipoate A/B protein ligase PFAM: Biotin/lipoate A/B protein ligase~KEGG: afe:Lferr_2168 biotin/lipoate A/B protein ligase gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2461 Acife_2462 Acife_2462 Acife_2462 2459250 2459660 - hypothetical protein KEGG: afr:AFE_2541 hypothetical protein gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2462 Acife_2463 Acife_2463 Acife_2463 2459783 2461090 - membrane protein involved in aromatic hydrocarbon degradation PFAM: Membrane protein%2C aromatic hydrocarbon degradation~KEGG: afr:AFE_2542 outer membrane protein%2C OMPP1/FadL/TodX family gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2463 Acife_2464 Acife_2464 Acife_2464 2461338 2462474 - Radical SAM domain protein KEGG: afr:AFE_2543 radical SAM domain protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2464 Acife_2465 Acife_2465 Acife_2465 2462499 2463560 - geranylgeranyl reductase KEGG: afr:AFE_2544 geranylgeranyl reductase family protein~TIGRFAM: Geranylgeranyl reductase%2C plant/prokaryotic~PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2465 Acife_2466 Acife_2466 Acife_2466 2463557 2464627 - biotin/lipoate A/B protein ligase PFAM: Biotin/lipoate A/B protein ligase~KEGG: afr:AFE_2545 lipoate-protein ligase A%2C putative gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2466 Acife_2467 Acife_2467 Acife_2467 2464676 2465797 - Radical SAM domain protein KEGG: afr:AFE_2546 radical SAM domain protein~PFAM: Radical SAM~SMART: Elongator protein 3/MiaB/NifB gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2467 Acife_2468 Acife_2468 Acife_2468 2465881 2466318 - Glycine cleavage system H protein KEGG: afr:AFE_2547 glycine cleavage system H protein%2C putative~HAMAP: Glycine cleavage H-protein~PFAM: Glycine cleavage H-protein gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2468 Acife_2469 Acife_2469 Acife_2469 2466377 2466772 - hypothetical protein KEGG: afr:AFE_2548 hypothetical protein gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2469 Acife_2470 Acife_2470 Acife_2470 2466769 2467215 - glycine cleavage H-protein PFAM: Glycine cleavage H-protein~KEGG: afr:AFE_2549 glycine cleavage system protein H%2C putative gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2470 Acife_2471 Acife_2471 Acife_2471 2467282 2468193 - protein of unknown function DUF224 cysteine-rich region domain protein PFAM: Cysteine-rich region%2C CCG~KEGG: afr:AFE_2550 succinate dehydrogenase/fumarate reductase%2C C subunit gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2471 Acife_2472 Acife_2472 Acife_2472 2468186 2468905 - iron-sulfur cluster-binding protein KEGG: afr:AFE_2551 iron-sulfur cluster-binding protein gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2472 Acife_2473 Acife_2473 Acife_2473 2468929 2469747 - hypothetical protein KEGG: afr:AFE_2552 hypothetical protein gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2473 Acife_2474 Acife_2474 Acife_2474 2469737 2470792 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: afr:AFE_2553 pyridine nucleotide-disulfide oxidoreductase gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2474 Acife_2475 Acife_2475 Acife_2475 2470805 2472148 - protein of unknown function DUF224 cysteine-rich region domain protein PFAM: Cysteine-rich region%2C CCG~KEGG: afr:AFE_2554 heterodisulfide reductase subunit B%2C homolog gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2475 Acife_2476 Acife_2476 Acife_2476 2472159 2472845 - iron-sulfur cluster-binding protein KEGG: afr:AFE_2555 iron-sulfur cluster-binding protein gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2476 Acife_2477 Acife_2477 Acife_2477 2472909 2473379 - hypothetical protein KEGG: afr:AFE_2556 hypothetical protein gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2477 Acife_2478 Acife_2478 Acife_2478 2473424 2473654 - SirA-like domain-containing protein PFAM: SirA-like~KEGG: afr:AFE_2557 hypothetical protein gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2478 Acife_2479 Acife_2479 Acife_2479 2473775 2474107 - Rhodanese-like protein KEGG: afr:AFE_2558 rhodanese-like domain protein~PFAM: Rhodanese-like~SMART: Rhodanese-like gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2479 Acife_2480 Acife_2480 Acife_2480 2474208 2475236 - molybdenum cofactor biosynthesis protein A TIGRFAM: Molybdenum cofactor biosynthesis protein A~PFAM: Molybdenum cofactor synthesis C-terminal%3B Radical SAM~KEGG: afr:AFE_2559 molybdenum cofactor biosynthesis protein A~SMART: Elongator protein 3/MiaB/NifB gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2480 Acife_2481 Acife_2481 Acife_2481 2475300 2476238 - DMSO reductase anchor subunit (DmsC) PFAM: DMSO reductase anchor subunit (DmsC)~KEGG: tkm:TK90_0146 DMSO reductase anchor subunit (DmsC) gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2481 Acife_2482 Acife_2482 Acife_2482 2476248 2476940 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~KEGG: tbd:Tbd_0571 DMSO reductase chain B gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2482 Acife_2483 Acife_2483 Acife_2483 2476959 2479817 - molybdopterin oxidoreductase Fe4S4 region PFAM: Molybdopterin oxidoreductase Fe4S4 region%3B Molybdopterin oxidoreductase%3B Molydopterin dinucleotide-binding region~KEGG: tkm:TK90_0144 nitrate reductase gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2483 Acife_2484 Acife_2484 Acife_2484 2479996 2480301 + hypothetical protein KEGG: afr:AFE_2560 hypothetical protein gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2484 Acife_2485 Acife_2485 Acife_2485 2480306 2480815 - molybdenum cofactor biosynthesis protein C KEGG: afr:AFE_2561 molybdenum cofactor biosynthesis protein C~TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region~PFAM: Molybdopterin cofactor biosynthesis MoaC region gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2485 Acife_2486 Acife_2486 Acife_2486 2480872 2482401 + hypothetical protein KEGG: drt:Dret_0095 phosphonate ABC transporter%2C periplasmic phosphonate-binding protein gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2486 Acife_2487 Acife_2487 Acife_2487 2482398 2483972 + signal transduction histidine kinase%2C nitrogen specific%2C NtrB KEGG: afr:AFE_0026 sensor histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2487 Acife_2488 Acife_2488 Acife_2488 2484003 2485373 + two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family KEGG: afr:AFE_0027 sigma-54 dependent transcriptional regulator/response regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver region%3B ATPase%2C AAA+ type%2C core gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2488 Acife_2489 Acife_2489 Acife_2489 2485766 2486068 + pseudogene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2489 Acife_2490 Acife_2490 Acife_2490 2486087 2486599 + hypothetical protein KEGG: mgm:Mmc1_3716 thiosulfate-binding protein SoxY gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2490 Acife_2491 Acife_2491 Acife_2491 2486637 2486969 + sulfur oxidation protein SoxZ PFAM: Sulphur oxidation protein SoxZ~KEGG: aae:aq_1809 hypothetical protein gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2491 Acife_2492 Acife_2492 Acife_2492 2486974 2487318 + pseudogene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2492 Acife_2493 Acife_2493 Acife_2493 2487346 2487879 + protein of unknown function DUF302 PFAM: Protein of unknown function DUF302~KEGG: mgm:Mmc1_3713 hypothetical protein gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2493 Acife_2494 Acife_2494 Acife_2494 2487898 2489625 + 5'-Nucleotidase domain-containing protein PFAM: 5'-Nucleotidase%2C C-terminal~KEGG: slt:Slit_1696 5'-nucleotidase domain protein gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2494 Acife_2495 Acife_2495 Acife_2495 2489905 2490948 + cell shape determining protein%2C MreB/Mrl family KEGG: afr:AFE_2562 rod shape-determining protein MreB~TIGRFAM: Cell shape determining protein MreB/Mrl~PFAM: Cell shape determining protein MreB/Mrl gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2495 Acife_2496 Acife_2496 Acife_2496 2490973 2491812 + rod shape-determining protein MreC KEGG: afr:AFE_2563 rod shape-determining protein MreC~TIGRFAM: Rod shape-determining protein MreC%2C subtype~PFAM: Rod shape-determining protein MreC gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2496 Acife_2497 Acife_2497 Acife_2497 2491809 2492285 + rod shape-determining protein MreD TIGRFAM: Cell shape-determining protein MreD~KEGG: afr:AFE_2564 rod shape-determining protein MreD%2C putative gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2497 Acife_2498 Acife_2498 Acife_2498 2492282 2492566 + hypothetical protein KEGG: afr:AFE_2565 penicillin-binding protein 2 gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2498 Acife_2499 Acife_2499 Acife_2499 2492563 2493657 + rod shape-determining protein RodA KEGG: afe:Lferr_2196 rod shape-determining protein RodA~TIGRFAM: Rod shape-determining protein RodA~PFAM: Cell cycle protein gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2499 Acife_2500 Acife_2500 Acife_2500 2493797 2494963 + peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 PFAM: Peptidase S11%2C D-alanyl-D-alanine carboxypeptidase A%3B Peptidase S11%2C D-Ala-D-Ala carboxypeptidase A%2C C-terminal~KEGG: afr:AFE_2567 D-alanyl-D-alanine carboxypeptidase gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2500 Acife_2501 Acife_2501 Acife_2501 2495067 2495396 + protein of unknown function DUF493 PFAM: Protein of unknown function DUF493~KEGG: afe:Lferr_2198 hypothetical protein gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2501 Acife_2502 Acife_2502 Acife_2502 2495393 2496031 + Octanoyltransferase TIGRFAM: Octanoyltransferase~HAMAP: Octanoyltransferase~KEGG: afr:AFE_2569 lipoate-protein ligase B~PFAM: Biotin/lipoate A/B protein ligase gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2502 Acife_2503 Acife_2503 Acife_2503 2496033 2496986 + Lipoyl synthase SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: Lipoate synthase~KEGG: afr:AFE_2570 lipoyl synthase~HAMAP: Lipoate synthase~PFAM: Radical SAM gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2503 Acife_2504 Acife_2504 Acife_2504 2497007 2497804 + protein of unknown function DUF218 PFAM: Protein of unknown function DUF218~KEGG: afr:AFE_2571 hypothetical protein gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2504 Acife_2505 Acife_2505 Acife_2505 2497838 2498926 - ErfK/YbiS/YcfS/YnhG family protein PFAM: YkuD domain~KEGG: afe:Lferr_2202 ErfK/YbiS/YcfS/YnhG family protein gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2505 Acife_2506 Acife_2506 Acife_2506 2499040 2499471 + hypothetical protein KEGG: afr:AFE_2573 hypothetical protein gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2506 Acife_2507 Acife_2507 Acife_2507 2499443 2499538 + hypothetical protein gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2507 Acife_2508 Acife_2508 Acife_2508 2499553 2501040 + hypothetical protein KEGG: afr:AFE_2574 hypothetical protein gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2508 Acife_2509 Acife_2509 Acife_2509 2501050 2502213 + hypothetical protein KEGG: afr:AFE_2575 hypothetical protein gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2509 Acife_2510 Acife_2510 Acife_2510 2502261 2502827 + small GTP-binding protein KEGG: afr:AFE_2576 small GTP-binding protein~TIGRFAM: Small GTP-binding protein~PFAM: Protein of unknown function%2C ATP binding gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2510 Acife_2511 Acife_2511 Acife_2511 2502824 2503462 + hypothetical protein KEGG: afr:AFE_2577 hypothetical protein gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2511 Acife_2512 Acife_2512 Acife_2512 2503513 2503875 + Roadblock/LC7 family protein PFAM: Dynein light chain-related~KEGG: afr:AFE_2578 roadblock/LC7 domain protein gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2512 Acife_2513 Acife_2513 Acife_2513 2503965 2504849 + Glycyl-tRNA synthetase alpha subunit TIGRFAM: Glycyl-tRNA synthetase%2C class IIc%2C alpha subunit~HAMAP: Glycyl-tRNA synthetase%2C class IIc%2C alpha subunit~KEGG: afr:AFE_2580 glycyl-tRNA synthetase subunit alpha~PFAM: Glycyl-tRNA synthetase%2C class IIc%2C alpha subunit gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2513 Acife_2514 Acife_2514 Acife_2514 2504836 2506920 + Glycyl-tRNA synthetase beta subunit TIGRFAM: Glycyl-tRNA synthetase%2C class IIc%2C beta subunit~HAMAP: Glycyl-tRNA synthetase beta subunit~KEGG: afr:AFE_2581 glycyl-tRNA synthetase%2C beta subunit~PFAM: Glycyl-tRNA synthetase%2C class IIc%2C beta subunit%2C N-terminal gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2514 Acife_2515 Acife_2515 Acife_2515 2506920 2507459 + histidinol-phosphate phosphatase family protein KEGG: afr:AFE_2582 histidinol-phosphate phosphatase domain protein~TIGRFAM: Histidinol-phosphate phosphatase%3B HAD-superfamily hydrolase%2C subfamily IIIA~PFAM: Haloacid dehalogenase-like hydrolase gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2515 Acife_2516 Acife_2516 Acife_2516 2507456 2508184 + phospholipid/glycerol acyltransferase KEGG: afr:AFE_2584 acyltransferase family protein~PFAM: Phospholipid/glycerol acyltransferase~SMART: Phospholipid/glycerol acyltransferase gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2516 Acife_2517 Acife_2517 Acife_2517 2508132 2509040 - alpha-L-glutamate ligase%2C RimK family KEGG: afr:AFE_2583 alpha-L-glutamate ligase%2C RimK family~TIGRFAM: S6 modification enzyme RimK~PFAM: ATP-grasp fold%2C RimK-type gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2517 Acife_2518 Acife_2518 Acife_2518 2509044 2509364 - hypothetical protein KEGG: afr:AFE_2585 hypothetical protein gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2518 Acife_2519 Acife_2519 Acife_2519 2509563 2510909 + protein of unknown function DUF224 cysteine-rich region domain protein PFAM: Cysteine-rich region%2C CCG~KEGG: afr:AFE_2554 heterodisulfide reductase subunit B%2C homolog gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2519 Acife_2520 Acife_2520 Acife_2520 2511091 2511393 + hypothetical protein KEGG: afr:AFE_2587 hypothetical protein gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2520 Acife_2521 Acife_2521 Acife_2521 2511457 2511786 - pterin-4-alpha-carbinolamine dehydratase KEGG: afr:AFE_1861 pterin-4-alpha-carbinolamine dehydratase~HAMAP: pterin-4-alpha-carbinolamine dehydratase~PFAM: Transcriptional coactivator/pterin dehydratase gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2521 Acife_2522 Acife_2522 Acife_2522 2511869 2512576 + protein of unknown function DUF208 PFAM: Protein of unknown function DUF208~KEGG: afr:AFE_2588 hypothetical protein gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2522 Acife_2523 Acife_2523 Acife_2523 2512764 2513336 - N-acetylmuramyl-L-alanine amidase%2C negative regulator of AmpC%2C AmpD KEGG: afr:AFE_2589 N-acetyl-anhydromuranmyl-L-alanine amidase~PFAM: N-acetylmuramoyl-L-alanine amidase%2C family 2~SMART: N-acetylmuramoyl-L-alanine amidase%2C family 2 gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2523 Acife_2524 Acife_2524 Acife_2524 2513333 2513719 - thioredoxin%2C putative KEGG: afr:AFE_2590 thioredoxin%2C putative gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2524 Acife_2525 Acife_2525 Acife_2525 2513754 2513882 - pseudogene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2525 Acife_2526 Acife_2526 Acife_2526 2513981 2515522 - 2-isopropylmalate synthase KEGG: afr:AFE_2596 2-isopropylmalate synthase~TIGRFAM: Bacterial 2-isopropylmalate synthase~PFAM: Pyruvate carboxyltransferase%3B 2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2526 Acife_2527 Acife_2527 Acife_2527 2515605 2515779 - pseudogene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2527 Acife_2528 Acife_2528 Acife_2528 2515818 2516174 - hypothetical protein KEGG: afr:AFE_2593 hypothetical protein gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2528 Acife_2529 Acife_2529 Acife_2529 2516302 2516835 - hypothetical protein KEGG: afr:AFE_1745 hypothetical protein gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2529 Acife_2530 Acife_2530 Acife_2530 2517254 2517937 + pseudogene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2530 Acife_2531 Acife_2531 Acife_2531 2518210 2518496 + pseudogene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2531 Acife_2532 Acife_2532 Acife_2532 2518682 2519134 - regulatory protein MerR KEGG: afr:AFE_2607 transcriptional regulator%2C MerR family~PFAM: HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2532 Acife_2533 Acife_2533 Acife_2533 2519109 2519408 - Integration host factor subunit alpha SMART: Histone-like bacterial DNA-binding protein~TIGRFAM: Integration host factor%2C alpha subunit~KEGG: afr:AFE_2608 integration host factor%2C alpha subunit~HAMAP: Integration host factor%2C alpha subunit~PFAM: Histone-like bacterial DNA-binding protein gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2533 Acife_2534 Acife_2534 Acife_2534 2519419 2521818 - Phenylalanyl-tRNA synthetase beta chain TIGRFAM: Phenylalanyl-tRNA synthetase%2C class IIc%2C beta subunit%2C bacterial~HAMAP: Phenylalanyl-tRNA synthetase%2C class IIc%2C beta subunit%2C bacterial~KEGG: afr:AFE_2609 phenylalanyl-tRNA synthetase%2C beta subunit gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2534 Acife_2535 Acife_2535 Acife_2535 2521828 2522850 - Phenylalanyl-tRNA synthetase alpha chain TIGRFAM: Phenylalanyl-tRNA synthetase%2C class IIc%2C alpha subunit~HAMAP: Phenylalanyl-tRNA synthetase alpha chain~KEGG: afr:AFE_2610 phenylalanyl-tRNA synthetase subunit alpha~PFAM: Phenylalanyl-tRNA synthetase alpha chain%3B Phenylalanyl-tRNA synthetase%2C class II%2C N-terminal gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2535 Acife_2536 Acife_2536 Acife_2536 2522871 2523230 - 50S ribosomal protein L20 TIGRFAM: Ribosomal protein L20~HAMAP: Ribosomal protein L20~KEGG: afr:AFE_2611 50S ribosomal protein L20~PFAM: Ribosomal protein L20 gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2536 Acife_2537 Acife_2537 Acife_2537 2523249 2523446 - 50S ribosomal protein L35 TIGRFAM: Ribosomal protein L35~HAMAP: Ribosomal protein L35~KEGG: afr:AFE_2612 50S ribosomal protein L35~PFAM: Ribosomal protein L35 gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2537 Acife_2538 Acife_2538 Acife_2538 2523456 2523956 - Translation initiation factor IF-3 TIGRFAM: Translation initiation factor 3~HAMAP: Translation initiation factor IF-3~KEGG: afr:AFE_2613 translation initiation factor IF-3~PFAM: Translation initiation factor 3%2C C-terminal%3B Translation initiation factor 3%2C N-terminal gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2538 Acife_2539 Acife_2539 Acife_2539 2523991 2525925 - threonyl-tRNA synthetase KEGG: afr:AFE_2614 threonyl-tRNA synthetase~TIGRFAM: Threonyl-tRNA synthetase%2C class IIa~PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region%3B Threonyl/alanyl tRNA synthetase%2C SAD%3B TGS%3B Anticodon-binding gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2539 Acife_2540 Acife_2540 Acife_2540 2526088 2526402 - hypothetical protein KEGG: afr:AFE_3120 hypothetical protein gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2540 Acife_2541 Acife_2541 Acife_2541 2526402 2527847 - NAD(P)H-quinone oxidoreductase subunit 2 TIGRFAM: NADH-quinone oxidoreductase%2C chain N~HAMAP: NAD(P)H-quinone oxidoreductase subunit 2~KEGG: afr:AFE_2617 NADH-quinone oxidoreductase%2C N subunit~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2541 Acife_2542 Acife_2542 Acife_2542 2527860 2529344 - proton-translocating NADH-quinone oxidoreductase%2C chain M KEGG: afr:AFE_2618 NADH-quinone oxidoreductase%2C M subunit~TIGRFAM: NADH-quinone oxidoreductase%2C chain M~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2542 Acife_2543 Acife_2543 Acife_2543 2529347 2531329 - proton-translocating NADH-quinone oxidoreductase%2C chain L KEGG: afe:Lferr_2246 proton-translocating NADH-quinone oxidoreductase subunit L~TIGRFAM: NADH-plastoquinone oxidoreductase%2C chain 5~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%3B NADH:ubiquinone oxidoreductase%2C chain 5/L%2C N-terminal gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2543 Acife_2544 Acife_2544 Acife_2544 2531331 2531648 - NAD(P)H-quinone oxidoreductase subunit 4L KEGG: afr:AFE_2620 NADH-quinone oxidoreductase%2C K subunit~HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L~PFAM: NADH:ubiquinone/quinone oxidoreductase%2C chain 4L gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2544 Acife_2545 Acife_2545 Acife_2545 2531645 2532244 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%2C chain 6~KEGG: afr:AFE_2621 NADH-quinone oxidoreductase%2C J subunit gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2545 Acife_2546 Acife_2546 Acife_2546 2532260 2532751 - NAD(P)H-quinone oxidoreductase subunit I TIGRFAM: NADH-quinone oxidoreductase%2C chain I~HAMAP: NADH-quinone oxidoreductase%2C chain I~KEGG: afr:AFE_2622 NADH dehydrogenase subunit I~PFAM: 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2546 Acife_2547 Acife_2547 Acife_2547 2532762 2533787 - NAD(P)H-quinone oxidoreductase subunit 1 KEGG: afr:AFE_2623 NADH-quinone oxidoreductase%2C H subunit~HAMAP: NAD(P)H-quinone oxidoreductase subunit 1~PFAM: NADH:ubiquinone oxidoreductase%2C subunit 1 gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2547 Acife_2548 Acife_2548 Acife_2548 2533799 2536144 - NADH-quinone oxidoreductase%2C chain G KEGG: afr:AFE_2624 NADH-quinone oxidoreductase%2C G subunit~TIGRFAM: NADH:ubiquinone oxidoreductase%2C subunit G~PFAM: Molybdopterin oxidoreductase%3B NADH:ubiquinone oxidoreductase%2C subunit G%2C iron-sulphur binding%3B Ferredoxin%3B Molybdopterin oxidoreductase Fe4S4 region%3B Molydopterin dinucleotide-binding region gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2548 Acife_2549 Acife_2549 Acife_2549 2536144 2537427 - NADH-quinone oxidoreductase%2C F subunit KEGG: afr:AFE_2625 NADH-quinone oxidoreductase%2C F subunit~TIGRFAM: NADH ubiquinone oxidoreductase%2C F subunit~PFAM: NADH:ubiquinone oxidoreductase%2C 51kDa subunit%3B Soluble ligand binding domain%3B NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2549 Acife_2550 Acife_2550 Acife_2550 2537417 2537908 - NADH-quinone oxidoreductase%2C E subunit KEGG: afr:AFE_2626 NADH-quinone oxidoreductase%2C E subunit~TIGRFAM: NADH:ubiquinone oxidoreductase%2C 24kDa subunit~PFAM: NADH:ubiquinone oxidoreductase%2C 24kDa subunit gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2550 Acife_2551 Acife_2551 Acife_2551 2537912 2539165 - NAD(P)H-quinone oxidoreductase subunit H TIGRFAM: NADH dehydrogenase I%2C D subunit~HAMAP: NAD(P)H-quinone oxidoreductase subunit H~KEGG: afr:AFE_2627 NADH dehydrogenase subunit D~PFAM: NADH-quinone oxidoreductase%2C subunit D gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2551 Acife_2552 Acife_2552 Acife_2552 2539149 2539757 - NAD(P)H-quinone oxidoreductase subunit J TIGRFAM: NADH (or F420H2) dehydrogenase%2C subunit C~HAMAP: NAD(P)H-quinone oxidoreductase subunit J~KEGG: afr:AFE_2628 NADH-quinone oxidoreductase%2C C subunit~PFAM: NADH:ubiquinone oxidoreductase%2C 30kDa subunit gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2552 Acife_2553 Acife_2553 Acife_2553 2539761 2540237 - NAD(P)H-quinone oxidoreductase subunit K TIGRFAM: NADH:ubiquinone oxidoreductase%2C 20kDa subunit~HAMAP: NAD(P)H-quinone oxidoreductase subunit K~KEGG: afr:AFE_2629 NADH dehydrogenase subunit B~PFAM: NADH:ubiquinone oxidoreductase-like%2C 20kDa subunit gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2553 Acife_2554 Acife_2554 Acife_2554 2540228 2540584 - NAD(P)H-quinone oxidoreductase subunit 3 KEGG: afr:AFE_2630 NADH-quinone oxidoreductase%2C A subunit~HAMAP: NAD(P)H-quinone oxidoreductase subunit 3~PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%2C chain 3 gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2554 Acife_2555 Acife_2555 Acife_2555 2540837 2541229 - preprotein translocase%2C SecG subunit KEGG: afr:AFE_2632 preprotein translocase%2C SecG subunit~TIGRFAM: Preprotein translocase SecG subunit~PFAM: Preprotein translocase SecG subunit gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2555 Acife_2556 Acife_2556 Acife_2556 2541234 2542007 - triosephosphate isomerase KEGG: afr:AFE_2633 triosephosphate isomerase~TIGRFAM: Triosephosphate isomerase~PFAM: Triosephosphate isomerase gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2556 Acife_2557 Acife_2557 Acife_2557 2542123 2543487 - phosphoglucosamine mutase KEGG: afr:AFE_2634 phosphoglucosamine mutase~TIGRFAM: Phosphoglucosamine mutase~PFAM: Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II%3B Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III%3B Alpha-D-phosphohexomutase%2C C-terminal gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2557 Acife_2558 Acife_2558 Acife_2558 2543571 2544410 - dihydropteroate synthase KEGG: afr:AFE_2635 dihydropteroate synthase~TIGRFAM: Dihydropteroate synthase~PFAM: Dihydropteroate synthase%2C DHPS gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2558 Acife_2559 Acife_2559 Acife_2559 2544407 2546329 - ATP-dependent metalloprotease FtsH TIGRFAM: Peptidase M41%2C FtsH~PFAM: Peptidase M41%3B ATPase%2C AAA-type%2C core%3B Peptidase M41%2C FtsH extracellular~KEGG: afr:AFE_2636 cell division protein FtsH~SMART: ATPase%2C AAA+ type%2C core gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2559 Acife_2560 Acife_2560 Acife_2560 2546427 2547872 - peptidase U62 modulator of DNA gyrase PFAM: Peptidase U62%2C modulator of DNA gyrase~KEGG: afr:AFE_2637 TldD protein gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2560 Acife_2561 Acife_2561 Acife_2561 2548214 2551066 + ribonucleoside-diphosphate reductase%2C alpha subunit KEGG: afr:AFE_2638 ribonucleotide-diphosphate reductase%2C alpha subunit~TIGRFAM: Ribonucleoside-diphosphate reductase%2C alpha subunit~PFAM: Ribonucleotide reductase large subunit%2C C-terminal%3B Ribonucleotide reductase large subunit%2C N-terminal%3B ATP-cone gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2561 Acife_2562 Acife_2562 Acife_2562 2551097 2552221 + ribonucleotide reductase PFAM: Ribonucleotide reductase~KEGG: afr:AFE_2639 ribonucleotide-diphosphate reductase subunit beta gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2562 Acife_2563 Acife_2563 Acife_2563 2552720 2553577 + hypothetical protein KEGG: sbm:Shew185_4002 hypothetical protein gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2563 Acife_2564 Acife_2564 Acife_2564 2553652 2554440 - hypothetical protein KEGG: nhl:Nhal_4020 hypothetical protein gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2564 Acife_2565 Acife_2565 Acife_2565 2554824 2555333 + hypothetical protein KEGG: bac:BamMC406_6734 hypothetical protein gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2565 Acife_2566 Acife_2566 Acife_2566 2555448 2556416 + hypothetical protein gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2566 Acife_2567 Acife_2567 Acife_2567 2556577 2557152 + hypothetical protein KEGG: kpe:KPK_A0235 hypothetical protein gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2567 Acife_2568 Acife_2568 Acife_2568 2557263 2557535 + hypothetical protein gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2568 Acife_2569 Acife_2569 Acife_2569 2558150 2561737 + hypothetical protein KEGG: cak:Caul_5232 hypothetical protein gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2569 Acife_2570 Acife_2570 Acife_2570 2562477 2563319 - hypothetical protein KEGG: afr:AFE_3189 hypothetical protein gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2570 Acife_2571 Acife_2571 Acife_2571 2563617 2563805 - hypothetical protein gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2571 Acife_2572 Acife_2572 Acife_2572 2563944 2564981 - hypothetical protein KEGG: psa:PST_0584 hypothetical protein gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2572 Acife_2573 Acife_2573 Acife_2573 2565194 2565472 + hypothetical protein gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2573 Acife_2574 Acife_2574 Acife_2574 2565588 2566319 + hypothetical protein KEGG: bgf:BC1003_0016 hypothetical protein gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2574 Acife_2575 Acife_2575 Acife_2575 2566316 2568352 + Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: mms:mma_0807 hypothetical protein gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2575 Acife_2576 Acife_2576 Acife_2576 2568630 2569592 + AAA ATPase SMART: ATPase%2C AAA+ type%2C core~KEGG: mms:mma_0806 hypothetical protein gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2576 Acife_2577 Acife_2577 Acife_2577 2569792 2571753 + hypothetical protein KEGG: rpf:Rpic12D_4722 hypothetical protein gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2577 Acife_2578 Acife_2578 Acife_2578 2571803 2572078 + hypothetical protein gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2578 Acife_2579 Acife_2579 Acife_2579 2572148 2572438 + DNA polymerase beta domain protein region PFAM: Nucleotidyltransferase~KEGG: gpb:HDN1F_30740 DNA polymerase%2C beta-like region gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2579 Acife_2580 Acife_2580 Acife_2580 2572435 2572803 + protein of unknown function DUF86 PFAM: Protein of unknown function DUF86~KEGG: avn:Avin_50240 hypothetical protein gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2580 Acife_2581 Acife_2581 Acife_2581 2572800 2573180 + pseudogene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2581 Acife_2582 Acife_2582 Acife_2582 2573150 2573338 + transposase TnpA%2C ISL3 family KEGG: xop:PXO_04731 transposase TnpA%2C ISL3 family gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2582 Acife_2583 Acife_2583 Acife_2583 2573628 2573900 - hypothetical protein gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2583 Acife_2584 Acife_2584 Acife_2584 2574345 2575256 - protein of unknown function DUF6 transmembrane PFAM: Protein of unknown function DUF6%2C transmembrane~KEGG: hna:Hneap_1754 protein of unknown function DUF6 transmembrane gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2584 Acife_2585 Acife_2585 Acife_2585 2575763 2576416 + class II aldolase/adducin family protein PFAM: Class II aldolase/adducin%2C N-terminal~KEGG: bts:Btus_2794 class II aldolase/adducin family protein gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2585 Acife_2586 Acife_2586 Acife_2586 2576413 2576790 + transcriptional regulator%2C PadR-like family PFAM: Transcriptional regulator PadR N-terminal-like~KEGG: bts:Btus_2793 transcriptional regulator%2C PadR-like family gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2586 Acife_2587 Acife_2587 Acife_2587 2576783 2577193 + Carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase~KEGG: afo:Afer_1875 carboxymuconolactone decarboxylase gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2587 Acife_2588 Acife_2588 Acife_2588 2577177 2577350 + hypothetical protein gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2588 Acife_2589 Acife_2589 Acife_2589 2577381 2577905 - Rhodanese-like protein SMART: Rhodanese-like~KEGG: lch:Lcho_1075 rhodanese domain-containing protein gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2589 Acife_2590 Acife_2590 Acife_2590 2578037 2578189 - hypothetical protein gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2590 Acife_2591 Acife_2591 Acife_2591 2578194 2578409 - pseudogene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2591 Acife_2592 Acife_2592 Acife_2592 2578714 2579139 - pseudogene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2592 Acife_2593 Acife_2593 Acife_2593 2579151 2579431 + pseudogene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2593 Acife_2594 Acife_2594 Acife_2594 2579656 2580014 - pseudogene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2594 Acife_2595 Acife_2595 Acife_2595 2580017 2580652 - cytochrome c oxidase subunit III PFAM: Cytochrome c oxidase%2C subunit III~KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase%2C subunit III gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2595 Acife_2596 Acife_2596 Acife_2596 2580725 2582860 - cytochrome c oxidase subunit I PFAM: Cytochrome c oxidase%2C subunit I~KEGG: afe:Lferr_0782 cytochrome-c oxidase gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2596 Acife_2597 Acife_2597 Acife_2597 2582883 2583854 - cytochrome c oxidase subunit II PFAM: Cytochrome c oxidase subunit II C-terminal%3B COX aromatic rich~KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase%2C subunit II gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2597 Acife_2598 Acife_2598 Acife_2598 2584020 2584103 - pseudogene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2598 Acife_2599 Acife_2599 Acife_2599 2584198 2585058 - protein of unknown function DUF1641 PFAM: Protein of unknown function DUF1641 gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2599 Acife_2600 Acife_2600 Acife_2600 2585118 2586425 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: tin:Tint_1281 FAD-dependent pyridine nucleotide-disulfide oxidoreductase gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2600 Acife_2601 Acife_2601 Acife_2601 2586577 2587512 - sulfur oxygenase reductase PFAM: Sulphur oxygenase reductase~KEGG: hna:Hneap_1222 sulfur oxygenase/reductase gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2601 Acife_2602 Acife_2602 Acife_2602 2587888 2589237 + Pyrrolo-quinoline quinone repeat-containing protein KEGG: sto:ST2470 hypothetical protein~PFAM: Pyrrolo-quinoline quinone repeat~SMART: Pyrrolo-quinoline quinone beta-propeller repeat gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2602 Acife_2603 Acife_2603 Acife_2603 2589431 2590243 + Tat (twin-arginine translocation) pathway signal sequence domain protein KEGG: afr:AFE_0042 Tat (twin-arginine translocation) pathway signal sequence domain protein gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2603 Acife_2604 Acife_2604 Acife_2604 2590751 2592559 + sodium/hydrogen exchanger PFAM: Cation/H+ exchanger%3B Regulator of K+ conductance%2C N-terminal~KEGG: pen:PSEEN4255 sodium/hydrogen exchanger family protein gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2604 Acife_2605 Acife_2605 Acife_2605 2592908 2593690 - hypothetical protein pseudogene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2605 Acife_2607 Acife_2607 Acife_2607 2593783 2594304 - hypothetical protein KEGG: alv:Alvin_3239 hypothetical protein gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2607 Acife_2608 Acife_2608 Acife_2608 2594620 2594904 - histone family protein DNA-binding protein KEGG: afr:AFE_1070 DNA-binding protein%2C HU family~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2608 Acife_2609 Acife_2609 Acife_2609 2595023 2595310 + protein of unknown function DUF167 KEGG: afe:Lferr_0253 hypothetical protein~manually curated~PFAM: Protein of unknown function DUF167 gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2609 Acife_2610 Acife_2610 Acife_2610 2595417 2595680 + hypothetical protein KEGG: afr:AFE_1865 hypothetical protein gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2610 Acife_2611 Acife_2611 Acife_2611 2595643 2595804 + hypothetical protein gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2611 Acife_2612 Acife_2612 Acife_2612 2595888 2596079 + hypothetical protein gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2612 Acife_2613 Acife_2613 Acife_2613 2596076 2596336 + hypothetical protein KEGG: afr:AFE_1198 hypothetical protein gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2613 Acife_2614 Acife_2614 Acife_2614 2596330 2597046 + ErfK/YbiS/YcfS/YnhG family protein PFAM: YkuD domain~KEGG: afr:AFE_2089 hypothetical protein gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2614 Acife_2615 Acife_2615 Acife_2615 2597365 2598738 + glutamate decarboxylase KEGG: syn:sll1641 glutamate decarboxylase~TIGRFAM: Glutamate decarboxylase~PFAM: Pyridoxal phosphate-dependent decarboxylase gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2615 Acife_2616 Acife_2616 Acife_2616 2599136 2600566 + phospholipase D/Transphosphatidylase PFAM: Phospholipase D/Transphosphatidylase~KEGG: mxa:MXAN_0537 putative cardiolipin synthase gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2616 Acife_2617 Acife_2617 Acife_2617 2600707 2601757 + hypothetical protein manually curated~KEGG: eba:ebA3243 IS5 family transposase gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2617 Acife_2618 Acife_2618 Acife_2618 2602100 2602286 + pseudogene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2618 Acife_2619 Acife_2619 Acife_2619 2602287 2602685 + IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2 like~KEGG: eba:ebB23 transpoase helper protein gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2619 Acife_2620 Acife_2620 Acife_2620 2602675 2604267 + transposase IS66 PFAM: Transposase%2C IS66~KEGG: eba:ebA859 transposase gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2620 Acife_2621 Acife_2621 Acife_2621 2604519 2605559 - transposase IS116/IS110/IS902 family protein PFAM: Transposase%2C IS116/IS110/IS902~KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2621 Acife_2622 Acife_2622 Acife_2622 2606213 2608423 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B DoxX~KEGG: afr:AFE_0098 DoxD family protein/pyridine nucleotide-disulfide oxidoreductase gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2622 Acife_2623 Acife_2623 Acife_2623 2608423 2609244 - pseudogene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2623 Acife_2624 Acife_2624 Acife_2624 2609532 2609915 + hypothetical protein gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2624 Acife_2625 Acife_2625 Acife_2625 2609985 2611751 + flavodoxin/nitric oxide synthase PFAM: Flavodoxin/nitric oxide synthase%3B FAD-binding%2C type 1%3B Oxidoreductase FAD/NAD(P)-binding~KEGG: afr:AFE_3121 sulfite reductase (NADPH) flavoprotein%2C alpha component gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2625 Acife_2626 Acife_2626 Acife_2626 2611741 2613432 + Sulfite reductase (NADPH) hemoprotein beta-component TIGRFAM: Sulphite reductase (NADPH) hemoprotein%2C beta subunit~HAMAP: Sulfite reductase [NADPH] hemoprotein beta-component~KEGG: afr:AFE_3122 sulfite reductase (NADPH) hemoprotein beta-component~PFAM: Nitrite/sulphite reductase 4Fe-4S region%3B Nitrite/sulphite reductase%2C hemoprotein beta-component%2C ferrodoxin-like gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2626 Acife_2627 Acife_2627 Acife_2627 2613429 2614169 + adenylylsulfate reductase%2C thioredoxin dependent KEGG: afr:AFE_3123 adenylylsulfate reductase%2C thioredoxin dependent~TIGRFAM: Adenylylsulphate reductase%2C thioredoxin dependent%3B Phosphoadenosine phosphosulphate reductase CysH-type~PFAM: Phosphoadenosine phosphosulphate reductase gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2627 Acife_2628 Acife_2628 Acife_2628 2614166 2615104 + sulfate adenylyltransferase%2C small subunit KEGG: afr:AFE_3124 sulfate adenylyltransferase subunit 2~TIGRFAM: Sulphate adenylyltransferase%2C small subunit~PFAM: Phosphoadenosine phosphosulphate reductase gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2628 Acife_2629 Acife_2629 Acife_2629 2615104 2616456 + sulfate adenylyltransferase%2C large subunit KEGG: afr:AFE_3125 sulfate adenylyltransferase%2C large subunit~TIGRFAM: Sulphate adenylyltransferase%2C large subunit~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2 gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2629 Acife_2630 Acife_2630 Acife_2630 2616547 2617368 + uroporphyrin-III C-methyltransferase KEGG: afr:AFE_3126 uroporphyrin-III C-methyltransferase~TIGRFAM: Uroporphyrin-III C-methyltransferase%2C C-terminal~PFAM: Tetrapyrrole methylase gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2630 Acife_2631 Acife_2631 Acife_2631 2617621 2618064 + hypothetical protein KEGG: afr:AFE_3128 hypothetical protein gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2631 Acife_2632 Acife_2632 Acife_2632 2618233 2618466 + SirA-like domain-containing protein PFAM: SirA-like~KEGG: afr:AFE_3117 hypothetical protein gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2632 Acife_2633 Acife_2633 Acife_2633 2618491 2619630 + FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: afr:AFE_3118 pyridine nucleotide-disulfide oxidoreductase gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2633 Acife_2634 Acife_2634 Acife_2634 2619645 2620106 + hypothetical protein KEGG: afe:Lferr_2717 hypothetical protein gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2634 Acife_2635 Acife_2635 Acife_2635 2620257 2621498 + aspartate kinase KEGG: afr:AFE_0407 aspartate kinase%2C monofunctional class~TIGRFAM: Aspartate kinase region%3B Aspartate kinase%2C monofunctional class~PFAM: Aspartate/glutamate/uridylate kinase%3B Amino acid-binding ACT gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2635 Acife_2636 Acife_2636 Acife_2636 2621498 2622664 + Acetylornithine/succinyldiaminopimelate aminotransferase TIGRFAM: Acetylornithine/succinylornithine aminotransferase~HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase~KEGG: afr:AFE_0406 acetylornithine aminotransferase~PFAM: Aminotransferase class-III gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2636 Acife_2637 Acife_2637 Acife_2637 2622661 2623596 + Ornithine carbamoyltransferase TIGRFAM: Ornithine carbamoyltransferase~HAMAP: Ornithine carbamoyltransferase~KEGG: afr:AFE_0405 ornithine carbamoyltransferase~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding region gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2637 Acife_2638 Acife_2638 Acife_2638 2623600 2624799 + Argininosuccinate synthase TIGRFAM: Argininosuccinate synthase~HAMAP: Argininosuccinate synthase~KEGG: afr:AFE_0404 argininosuccinate synthase~PFAM: Argininosuccinate synthase gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2638 Acife_2639 Acife_2639 Acife_2639 2624805 2625122 + protein of unknown function DUF1255 PFAM: Protein of unknown function DUF1255~KEGG: afr:AFE_0403 hypothetical protein gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2639 Acife_2640 Acife_2640 Acife_2640 2625133 2625540 + lactoylglutathione lyase KEGG: afr:AFE_0402 lactoylglutathione lyase~TIGRFAM: Glyoxalase I~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2640 Acife_2641 Acife_2641 Acife_2641 2625573 2626298 - DNA polymerase III%2C epsilon subunit TIGRFAM: DNA polymerase 3%2C epsilon subunit%3B DNA polymerase III%2C epsilon subunit~PFAM: Exonuclease%2C RNase T/DNA polymerase III~KEGG: afr:AFE_0400 DNA polymerase III%2C epsilon subunit~SMART: Exonuclease gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2641 Acife_2642 Acife_2642 Acife_2642 2626289 2626765 - Ribonuclease H KEGG: afr:AFE_0399 ribonuclease HI~HAMAP: Ribonuclease H~PFAM: Ribonuclease H gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2642 Acife_2643 Acife_2643 Acife_2643 2626747 2627547 - Methyltransferase type 11 PFAM: Methyltransferase type 11~KEGG: afr:AFE_0398 hypothetical protein gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2643 Acife_2644 Acife_2644 Acife_2644 2627656 2628408 + Hydroxyacylglutathione hydrolase KEGG: afr:AFE_0397 hydroxyacylglutathione hydrolase%2C putative~TIGRFAM: Hydroxyacylglutathione hydrolase~HAMAP: Hydroxyacylglutathione hydrolase gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2644 Acife_2645 Acife_2645 Acife_2645 2628411 2629646 - peptidase M16 domain protein PFAM: Peptidase M16%2C C-terminal%3B Peptidase M16%2C N-terminal~KEGG: afr:AFE_0396 peptidase%2C M16 family gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2645 Acife_2646 Acife_2646 Acife_2646 2629815 2631893 - Polyribonucleotide nucleotidyltransferase TIGRFAM: Polyribonucleotide nucleotidyltransferase~HAMAP: Polyribonucleotide nucleotidyltransferase~KEGG: afe:Lferr_0559 polyribonucleotide nucleotidyltransferase~PFAM: Exoribonuclease%2C phosphorolytic domain 1%3B Exoribonuclease%2C phosphorolytic domain 2%3B Polynucleotide phosphorylase%2C phosphorolytic RNA-binding%2C bacterial/organelle-type%3B K Homology%2C type 1%2C subgroup%3B Ribosomal protein S1%2C RNA binding domain gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2646 Acife_2647 Acife_2647 Acife_2647 2631904 2632173 - ribosomal protein S15 KEGG: afr:AFE_0394 30S ribosomal protein S15~TIGRFAM: Ribosomal protein S15%2C bacterial-type~PFAM: Ribosomal protein S15 gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2647 Acife_2648 Acife_2648 Acife_2648 2632212 2633096 - tRNA pseudouridine synthase B TIGRFAM: Pseudouridine synthase II%2C TruB%2C N-terminal%2C bacterial-type~HAMAP: tRNA pseudouridine synthase B~KEGG: afr:AFE_0393 tRNA pseudouridine synthase B~PFAM: Pseudouridine synthase II%2C TruB%2C N-terminal%3B Pseudouridine synthase II%2C TruB%2C subfamily 1%2C C-terminal%2C bacterial-type gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2648 Acife_2649 Acife_2649 Acife_2649 2633093 2633488 - Ribosome-binding factor A TIGRFAM: Ribosome-binding factor A~HAMAP: Ribosome-binding factor A~KEGG: afr:AFE_0392 ribosome-binding factor A~PFAM: Ribosome-binding factor A gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2649 Acife_2650 Acife_2650 Acife_2650 2633498 2636128 - translation initiation factor IF-2 KEGG: afr:AFE_0391 translation initiation factor IF-2~TIGRFAM: Initiation factor 2%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Initiation factor 2 associated region%2C bacterial%3B Translation initiation factor IF-2%2C N-terminal%3B Translation elongation factor EFTu/EF1A%2C domain 2 gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2650 Acife_2651 Acife_2651 Acife_2651 2636188 2637669 - NusA antitermination factor KEGG: afr:AFE_0390 transcription termination factor NusA~TIGRFAM: Transcription termination factor NusA%3B Transcription termination factor NusA%2C C-terminal duplication~PFAM: Transcription factor NusA%2C N-terminal%3B Ribosomal protein S1%2C RNA binding domain gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2651 Acife_2652 Acife_2652 Acife_2652 2637701 2638162 - Ribosome maturation factor rimP KEGG: afe:Lferr_0553 hypothetical protein~HAMAP: Uncharacterised protein family UPF0090%2C bacteria~PFAM: Uncharacterised protein family UPF0090 gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2652 Acife_2653 Acife_2653 Acife_2653 2643725 2644768 - ErfK/YbiS/YcfS/YnhG family protein PFAM: YkuD domain~KEGG: afr:AFE_0382 ErfK/YbiS/YcfS/YnhG family protein gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2653 Acife_2654 Acife_2654 Acife_2654 2644765 2644998 - hypothetical protein KEGG: afr:AFE_0381 hypothetical protein gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2654 Acife_2655 Acife_2655 Acife_2655 2645003 2646268 - Seryl-tRNA synthetase PFAM: Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved region%3B Seryl-tRNA synthetase%2C class IIa%2C N-terminal~manually curated~TIGRFAM: Seryl-tRNA synthetase%2C class IIa~KEGG: afr:AFE_0380 seryl-tRNA synthetase~HAMAP: Seryl-tRNA synthetase gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2655 Acife_2656 Acife_2656 Acife_2656 2646261 2647592 - AAA ATPase central domain protein KEGG: afr:AFE_0379 ATPase%2C AAA family~PFAM: ATPase%2C AAA-type%2C core~SMART: ATPase%2C AAA+ type%2C core gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2656 Acife_2657 Acife_2657 Acife_2657 2647620 2648696 - membrane protein involved in aromatic hydrocarbon degradation PFAM: Membrane protein%2C aromatic hydrocarbon degradation~KEGG: afr:AFE_0378 outer membrane protein transport protein%2C OMPP1/FadL/TodX family gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2657 Acife_2658 Acife_2658 Acife_2658 2648714 2649406 - Outer-membrane lipoprotein carrier protein TIGRFAM: Outer membrane lipoprotein carrier protein LolA%2C Proteobacteria~HAMAP: Outer membrane lipoprotein carrier protein LolA%2C Proteobacteria~KEGG: afr:AFE_0377 outer membrane lipoprotein carrier protein LolA%2C putative~PFAM: Outer membrane lipoprotein carrier protein LolA gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2658 Acife_2659 Acife_2659 Acife_2659 2649378 2651693 - cell division FtsK/SpoIIIE PFAM: Cell divisionFtsK/SpoIIIE%3B DNA translocase ftsK gamma~KEGG: afe:Lferr_0546 cell divisionFtsK/SpoIIIE gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2659 Acife_2660 Acife_2660 Acife_2660 2651955 2652923 + thioredoxin reductase KEGG: afr:AFE_0375 thioredoxin-disulfide reductase~TIGRFAM: Thioredoxin reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2660 Acife_2661 Acife_2661 Acife_2661 2652929 2653504 + Smr protein/MutS2 KEGG: afr:AFE_0374 Smr domain protein~PFAM: Smr protein/MutS2 C-terminal~SMART: Smr protein/MutS2 C-terminal gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2661 Acife_2662 Acife_2662 Acife_2662 2653525 2654001 - transcriptional regulator%2C MerR family KEGG: afr:AFE_0373 transcriptional regulator%2C MerR family~PFAM: Transcription regulator MerR%2C DNA binding%3B HTH transcriptional regulator%2C MerR~SMART: HTH transcriptional regulator%2C MerR gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2662 Acife_2663 Acife_2663 Acife_2663 2654078 2655166 - tRNA pseudouridine synthase D TIGRFAM: Pseudouridine synthase%2C TruD~HAMAP: tRNA pseudouridine synthase D~KEGG: afr:AFE_0372 tRNA pseudouridine synthase D~PFAM: Pseudouridine synthase%2C TruD gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2663 Acife_2664 Acife_2664 Acife_2664 2655159 2655638 - 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase TIGRFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core~HAMAP: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core~KEGG: afe:Lferr_0541 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase~PFAM: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2664 Acife_2665 Acife_2665 Acife_2665 2655643 2656356 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase~HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~KEGG: afr:AFE_0370 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase~PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2665 Acife_2666 Acife_2666 Acife_2666 2656510 2659875 + transcription-repair coupling factor TIGRFAM: Transcription-repair coupling factor~PFAM: DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal%3B Transcription factor CarD%3B DNA/RNA helicase%2C C-terminal%3B Transcription-repair-coupling factor~KEGG: afr:AFE_0369 transcription-repair coupling factor~SMART: DEAD-like helicase%2C N-terminal%3B DNA/RNA helicase%2C C-terminal gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2666 Acife_2667 Acife_2667 Acife_2667 2659890 2661104 + transposase IS204/IS1001/IS1096/IS1165 family protein PFAM: Transposase%2C IS204/IS1001/IS1096/IS1165~KEGG: cph:Cpha266_2270 transposase%2C IS204/IS1001/IS1096/IS1165 family protein gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2667 Acife_2668 Acife_2668 Acife_2668 2661120 2661266 + pseudogene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2668 Acife_2669 Acife_2669 Acife_2669 2661263 2662381 + phosphoserine phosphatase SerB KEGG: afe:Lferr_0538 phosphoserine phosphatase SerB~TIGRFAM: Phosphoserine phosphatase SerB%3B HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like~PFAM: Haloacid dehalogenase-like hydrolase gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2669 Acife_2670 Acife_2670 Acife_2670 2662521 2663264 + glutaredoxin domain protein region KEGG: afr:AFE_0367 AhpC/TSA family/glutaredoxin domain protein~TIGRFAM: Glutaredoxin-like region~PFAM: Redoxin%3B Glutaredoxin gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2670 Acife_2671 Acife_2671 Acife_2671 2663345 2664694 + glutathione-disulfide reductase KEGG: afr:AFE_0366 glutathione reductase~TIGRFAM: Glutathione reductase%2C animal/bacterial~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2671 Acife_2672 Acife_2672 Acife_2672 2664719 2665531 - methylthioadenosine phosphorylase KEGG: afr:AFE_0365 methylthioadenosine phosphorylase~TIGRFAM: Methylthioadenosine phosphorylase~PFAM: Nucleoside phosphorylase gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2672 Acife_2673 Acife_2673 Acife_2673 2665531 2666079 - phosphoribosyltransferase PFAM: Phosphoribosyltransferase~KEGG: afr:AFE_0364 hypoxanthine-guanine phosphoribosyltransferase%2C putative gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2673 Acife_2674 Acife_2674 Acife_2674 2666084 2666461 - hypothetical protein KEGG: afr:AFE_0363 hypothetical protein gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2674 Acife_2675 Acife_2675 Acife_2675 2666572 2666928 - hypothetical protein KEGG: afr:AFE_0362 hypothetical protein gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2675 Acife_2676 Acife_2676 Acife_2676 2666952 2667305 - hypothetical protein KEGG: afr:AFE_0361 hypothetical protein gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2676 Acife_2677 Acife_2677 Acife_2677 2667470 2668180 - phosphoesterase PA-phosphatase related protein KEGG: afr:AFE_0360 PAP2 family protein~PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase~SMART: Phosphatidic acid phosphatase type 2/haloperoxidase gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2677 Acife_2678 Acife_2678 Acife_2678 2668220 2668585 - diacylglycerol kinase PFAM: Diacylglycerol kinase%2C prokaryotic~KEGG: afr:AFE_0359 diacylglycerol kinase gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2678 Acife_2679 Acife_2679 Acife_2679 2668582 2669256 - DNA repair protein RadC KEGG: afr:AFE_0358 DNA repair protein RadC~TIGRFAM: DNA repair%2C RadC-like~PFAM: DNA repair%2C RadC-like gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2679 Acife_2680 Acife_2680 Acife_2680 2669292 2670545 + phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase KEGG: afr:AFE_0357 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase~TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase~PFAM: Flavoprotein%3B DNA/pantothenate metabolism flavoprotein%2C C-terminal gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2680 Acife_2681 Acife_2681 Acife_2681 2670538 2670990 + deoxyuridine 5'-triphosphate nucleotidohydrolase Dut KEGG: afr:AFE_0356 deoxyuridine 5`-triphosphate nucleotidohydrolase~TIGRFAM: DeoxyUTP pyrophosphatase domain%2C subfamily 1%2C~PFAM: DeoxyUTP pyrophosphatase domain gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2681 Acife_2682 Acife_2682 Acife_2682 2671149 2671523 - 50S ribosomal protein L17 TIGRFAM: Ribosomal protein L17~HAMAP: 50S ribosomal protein L17~KEGG: afr:AFE_0355 50S ribosomal protein L17~PFAM: Ribosomal protein L17 gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2682 Acife_2683 Acife_2683 Acife_2683 2671554 2672573 - DNA-directed RNA polymerase subunit alpha SMART: DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type~TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit~KEGG: afr:AFE_0354 DNA-directed RNA polymerase subunit alpha~HAMAP: DNA-directed RNA polymerase%2C alpha subunit~PFAM: DNA-directed RNA polymerase%2C insert%3B DNA-directed RNA polymerase%2C dimerisation%3B RNA polymerase%2C alpha subunit%2C C-terminal gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2683 Acife_2684 Acife_2684 Acife_2684 2672596 2673222 - ribosomal protein S4 TIGRFAM: Ribosomal protein S4%2C bacterial-type~PFAM: Ribosomal protein S4%3B RNA-binding S4~KEGG: afr:AFE_0353 ribosomal protein S4~SMART: RNA-binding S4 gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2684 Acife_2685 Acife_2685 Acife_2685 2673243 2673638 - 30S ribosomal protein S11 KEGG: afr:AFE_0352 ribosomal protein S11~TIGRFAM: Ribosomal protein S11%2C bacterial-type~PFAM: Ribosomal protein S11 gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2685 Acife_2686 Acife_2686 Acife_2686 2673656 2674012 - 30S ribosomal protein S13 KEGG: afr:AFE_0351 30S ribosomal protein S13~TIGRFAM: Ribosomal protein S13%2C bacterial-type~PFAM: Ribosomal protein S13 gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2686 Acife_2687 Acife_2687 Acife_2687 2674076 2674189 - 50S ribosomal protein L36 PFAM: Ribosomal protein L36~manually curated~TIGRFAM: Ribosomal protein L36~KEGG: afr:AFE_0350 50S ribosomal protein L36~HAMAP: Ribosomal protein L36 gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2687 Acife_2688 Acife_2688 Acife_2688 2674199 2674417 - Translation initiation factor IF-1 TIGRFAM: Translation initiation factor IF-1~HAMAP: Translation initiation factor IF-1~KEGG: afr:AFE_0349 translation initiation factor IF-1~PFAM: S1%2C IF1 type gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2688 Acife_2689 Acife_2689 Acife_2689 2674418 2675080 - Adenylate kinase TIGRFAM: Adenylate kinase%2C subfamily~HAMAP: Adenylate kinase~KEGG: afe:Lferr_0518 nucleoside-triphosphate--adenylate kinase~PFAM: Adenylate kinase%3B Adenylate kinase%2C zinc-finger lid region gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2689 Acife_2690 Acife_2690 Acife_2690 2675077 2676408 - preprotein translocase%2C SecY subunit KEGG: afr:AFE_0347 preprotein translocase%2C SecY subunit~TIGRFAM: SecY protein~PFAM: SecY protein gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2690 Acife_2691 Acife_2691 Acife_2691 2676408 2676845 - ribosomal protein L15 KEGG: afr:AFE_0346 50S ribosomal protein L15~TIGRFAM: Ribosomal protein L15%2C bacterial-type~PFAM: Ribosomal protein L15 gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2691 Acife_2692 Acife_2692 Acife_2692 2676842 2677027 - ribosomal protein L30 KEGG: afr:AFE_0345 50S ribosomal protein L30~TIGRFAM: Ribosomal protein L30%2C bacterial-type~PFAM: Ribosomal protein L30p/L7e%2C conserved region gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2692 Acife_2693 Acife_2693 Acife_2693 2677020 2677550 - ribosomal protein S5 KEGG: afr:AFE_0344 30S ribosomal protein S5~TIGRFAM: Ribosomal protein S5%2C bacterial-type~PFAM: Ribosomal protein S5%2C C-terminal%3B Ribosomal protein S5%2C N-terminal gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2693 Acife_2694 Acife_2694 Acife_2694 2677563 2677916 - ribosomal protein L18 KEGG: afr:AFE_0343 50S ribosomal protein L18~TIGRFAM: Ribosomal protein L18%2C bacterial~PFAM: Ribosomal protein L18/L5 gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2694 Acife_2695 Acife_2695 Acife_2695 2677935 2678459 - ribosomal protein L6 KEGG: afr:AFE_0342 50S ribosomal protein L6~TIGRFAM: Ribosomal protein L6%2C bacterial-type~PFAM: Ribosomal protein L6%2C alpha-beta domain gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2695 Acife_2696 Acife_2696 Acife_2696 2678473 2678868 - ribosomal protein S8 PFAM: Ribosomal protein S8~KEGG: afr:AFE_0341 30S ribosomal protein S8 gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2696 Acife_2697 Acife_2697 Acife_2697 2678878 2679063 - ribosomal protein S14 KEGG: afr:AFE_0340 30S ribosomal protein S14~manually curated~PFAM: Ribosomal protein S14 gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2697 Acife_2698 Acife_2698 Acife_2698 2679077 2679619 - ribosomal protein L5 PFAM: Ribosomal protein L5~KEGG: afr:AFE_0339 50S ribosomal protein L5 gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2698 Acife_2699 Acife_2699 Acife_2699 2679634 2679954 - ribosomal protein L24 TIGRFAM: Ribosomal protein L24~PFAM: KOW~KEGG: afr:AFE_0338 50S ribosomal protein L24~SMART: KOW gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2699 Acife_2700 Acife_2700 Acife_2700 2679964 2680332 - ribosomal protein L14 KEGG: afr:AFE_0337 50S ribosomal protein L14~TIGRFAM: Ribosomal protein L14%2C bacterial-type~PFAM: Ribosomal protein L14b/L23e gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2700 Acife_2701 Acife_2701 Acife_2701 2680329 2680604 - 30S ribosomal protein S17 KEGG: afr:AFE_0336 ribosomal protein S17~TIGRFAM: Ribosomal protein S17%2C bacterial-type~PFAM: Ribosomal protein S17 gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2701 Acife_2702 Acife_2702 Acife_2702 2680601 2680798 - ribosomal protein L29 KEGG: afr:AFE_0335 50S ribosomal protein L29~TIGRFAM: Ribosomal protein L29~PFAM: Ribosomal protein L29 gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2702 Acife_2703 Acife_2703 Acife_2703 2680795 2681211 - 50S ribosomal protein L16 TIGRFAM: Ribosomal protein L16~HAMAP: Ribosomal protein L16~KEGG: afr:AFE_0334 50S ribosomal protein L16~PFAM: Ribosomal protein L10e/L16 gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2703 Acife_2704 Acife_2704 Acife_2704 2681224 2681886 - ribosomal protein S3 TIGRFAM: Ribosomal protein S3%2C bacterial~PFAM: Ribosomal protein S3%2C C-terminal%3B K Homology%2C type 2%3B Ribosomal protein S3%2C N-terminal~KEGG: afr:AFE_0333 ribosomal protein S3~SMART: K Homology gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2704 Acife_2705 Acife_2705 Acife_2705 2681898 2682230 - ribosomal protein L22 manually curated~TIGRFAM: Ribosomal protein L22%2C bacterial-type~KEGG: afr:AFE_0332 50S ribosomal protein L22~PFAM: Ribosomal protein L22/L17 gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2705 Acife_2706 Acife_2706 Acife_2706 2682242 2682517 - ribosomal protein S19 KEGG: afr:AFE_0331 30S ribosomal protein S19~TIGRFAM: Ribosomal protein S19%2C bacterial-type~PFAM: Ribosomal protein S19/S15 gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2706 Acife_2707 Acife_2707 Acife_2707 2682536 2683360 - ribosomal protein L2 KEGG: afr:AFE_0330 50S ribosomal protein L2~TIGRFAM: Ribosomal protein L2%2C bacterial-type~PFAM: Ribosomal protein L2 gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2707 Acife_2708 Acife_2708 Acife_2708 2683377 2683670 - Ribosomal protein L25/L23 PFAM: Ribosomal protein L25/L23~KEGG: afr:AFE_0329 50S ribosomal protein L23 gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2708 Acife_2709 Acife_2709 Acife_2709 2683667 2684284 - ribosomal protein L4/L1e PFAM: Ribosomal protein L4/L1e~KEGG: afr:AFE_0328 50S ribosomal protein L4 gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2709 Acife_2710 Acife_2710 Acife_2710 2684295 2684927 - 50S ribosomal protein L3 KEGG: afr:AFE_0327 50S ribosomal protein L3~TIGRFAM: Ribosomal protein L3%2C bacterial/organelle-type~PFAM: Ribosomal protein L3 gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2710 Acife_2711 Acife_2711 Acife_2711 2684945 2685253 - 30S ribosomal protein S10 TIGRFAM: Ribosomal protein S10%2C bacterial~HAMAP: 30S ribosomal protein S10~KEGG: afr:AFE_0326 30S ribosomal protein S10~PFAM: Ribosomal protein S10 gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2711 Acife_2712 Acife_2712 Acife_2712 2685253 2686443 - translation elongation factor Tu KEGG: afr:AFE_0325 elongation factor Tu~TIGRFAM: Translation elongation factor EFTu/EF1A%2C bacterial/organelle%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFTu/EF1A%2C C-terminal gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2712 Acife_2713 Acife_2713 Acife_2713 2686464 2688563 - translation elongation factor G KEGG: afr:AFE_0324 elongation factor G~TIGRFAM: Translation elongation factor EFG/EF2%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFG/EF2%2C domain IV%3B Translation elongation factor EFG/EF2%2C C-terminal gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2713 Acife_2714 Acife_2714 Acife_2714 2688595 2689065 - ribosomal protein S7 KEGG: afr:AFE_0323 30S ribosomal protein S7~TIGRFAM: Ribosomal protein S7%2C bacterial-type~PFAM: Ribosomal protein S7 gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2714 Acife_2715 Acife_2715 Acife_2715 2689092 2689463 - ribosomal protein S12 KEGG: afr:AFE_0322 30S ribosomal protein S12~TIGRFAM: Ribosomal protein S12%2C bacterial-type~PFAM: Ribosomal protein S12/S23 gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2715 Acife_2716 Acife_2716 Acife_2716 2689571 2693734 - DNA-directed RNA polymerase subunit beta' SMART: RNA polymerase%2C N-terminal~TIGRFAM: DNA-directed RNA polymerase%2C subunit beta-prime~KEGG: afe:Lferr_0491 DNA-directed RNA polymerase subunit beta'~HAMAP: DNA-directed RNA polymerase subunit beta'~PFAM: RNA polymerase Rpb1%2C domain 1%3B RNA polymerase%2C alpha subunit%3B RNA polymerase Rpb1%2C domain 3%3B RNA polymerase Rpb1%2C domain 4%3B RNA polymerase Rpb1%2C domain 5 gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2716 Acife_2717 Acife_2717 Acife_2717 2693758 2697846 - DNA-directed RNA polymerase subunit beta TIGRFAM: DNA-directed RNA polymerase%2C beta subunit%2C bacterial-type~HAMAP: DNA-directed RNA polymerase subunit beta~KEGG: afr:AFE_0320 DNA-directed RNA polymerase%2C beta subunit~PFAM: DNA-directed RNA polymerase%2C subunit 2%2C domain 6%3B RNA polymerase Rpb2%2C domain 3%3B RNA polymerase%2C beta subunit%2C protrusion%3B RNA polymerase Rpb2%2C domain 2%3B DNA-directed RNA polymerase%2C beta subunit%2C external 1 domain%3B RNA polymerase Rpb2%2C domain 7 gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2717 Acife_2718 Acife_2718 Acife_2718 2697969 2698355 - 50S ribosomal protein L7/L12 TIGRFAM: Ribosomal protein L7/L12~HAMAP: Ribosomal protein L7/L12~KEGG: afr:AFE_0318 50S ribosomal protein L7/L12~PFAM: Ribosomal protein L7/L12%2C C-terminal gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2718 Acife_2719 Acife_2719 Acife_2719 2698385 2698906 - 50S ribosomal protein L10 KEGG: afr:AFE_0317 50S ribosomal protein L10~HAMAP: 50S ribosomal protein L10~PFAM: Ribosomal protein L10 gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2719 Acife_2720 Acife_2720 Acife_2720 2699051 2699743 - ribosomal protein L1 KEGG: afr:AFE_0316 50S ribosomal protein L1~TIGRFAM: Ribosomal protein L1%2C bacterial-type~PFAM: Ribosomal protein L1 gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2720 Acife_2721 Acife_2721 Acife_2721 2699747 2700175 - ribosomal protein L11 TIGRFAM: Ribosomal protein L11%2C bacterial-type~PFAM: Ribosomal protein L11%2C C-terminal%3B Ribosomal protein L11%2C N-terminal~KEGG: afr:AFE_0315 50S ribosomal protein L11~SMART: Ribosomal protein L11 gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2721 Acife_2722 Acife_2722 Acife_2722 2700230 2700763 - NusG antitermination factor TIGRFAM: Transcription antitermination protein%2C NusG~PFAM: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW~KEGG: afr:AFE_0314 transcription termination/antitermination factor NusG~SMART: Transcription antitermination protein%2C NusG%2C N-terminal%3B KOW gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2722 Acife_2723 Acife_2723 Acife_2723 2700764 2701114 - preprotein translocase%2C SecE subunit KEGG: afr:AFE_0313 preprotein translocase%2C SecE subunit~TIGRFAM: SecE subunit of protein translocation complex~PFAM: Protein secE/sec61-gamma protein gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2723 Acife_2724 Acife_2724 Acife_2724 2701265 2702455 - translation elongation factor Tu KEGG: afr:AFE_0325 elongation factor Tu~TIGRFAM: Translation elongation factor EFTu/EF1A%2C bacterial/organelle%3B Small GTP-binding protein~PFAM: Protein synthesis factor%2C GTP-binding%3B Translation elongation factor EFTu/EF1A%2C domain 2%3B Translation elongation factor EFTu/EF1A%2C C-terminal gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2724 Acife_2725 Acife_2725 Acife_2725 2703033 2703674 + OmpA/MotB domain protein PFAM: Outer membrane protein%2C OmpA/MotB%2C C-terminal~KEGG: afr:AFE_0306 OmpA family protein gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2725 Acife_2726 Acife_2726 Acife_2726 2703774 2705456 + 2-polyprenylphenol 6-hydroxylase KEGG: afr:AFE_0305 2-polyprenylphenol 6-hydroxylase~TIGRFAM: 2-polyprenylphenol 6-hydroxylase~PFAM: ABC-1 gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2726 Acife_2727 Acife_2727 Acife_2727 2705514 2705867 + hypothetical protein KEGG: afr:AFE_0304 hypothetical protein gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2727 Acife_2728 Acife_2728 Acife_2728 2705883 2706455 - Sel1 domain protein repeat-containing protein KEGG: afr:AFE_0303 hypothetical protein~PFAM: Sel1-like~SMART: Sel1-like gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2728 Acife_2729 Acife_2729 Acife_2729 2706619 2706939 - hypothetical protein KEGG: afr:AFE_0302 hypothetical protein gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2729 Acife_2730 Acife_2730 Acife_2730 2707057 2707500 - NusB antitermination factor TIGRFAM: NusB antitermination factor~HAMAP: N utilization substance protein B-like protein~KEGG: afr:AFE_0301 transcription antitermination factor NusB~PFAM: NusB/RsmB/TIM44 gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2730 Acife_2731 Acife_2731 Acife_2731 2707510 2707974 - 6%2C7-dimethyl-8-ribityllumazine synthase TIGRFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~HAMAP: 6%2C7-dimethyl-8-ribityllumazine synthase~KEGG: afr:AFE_0300 6%2C7-dimethyl-8-ribityllumazine synthase~PFAM: 6%2C7-dimethyl-8-ribityllumazine synthase gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2731 Acife_2732 Acife_2732 Acife_2732 2707971 2709104 - 3%2C4-dihydroxy-2-butanone 4-phosphate synthase TIGRFAM: DHBP synthase RibB~HAMAP: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase~KEGG: afr:AFE_0299 3%2C4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II~PFAM: DHBP synthase RibB%3B GTP cyclohydrolase II gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2732 Acife_2733 Acife_2733 Acife_2733 2709101 2709757 - riboflavin synthase%2C alpha subunit KEGG: afr:AFE_0298 riboflavin synthase%2C alpha subunit~TIGRFAM: Lumazine-binding protein~PFAM: Lumazine-binding protein gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2733 Acife_2734 Acife_2734 Acife_2734 2709761 2710864 - riboflavin biosynthesis protein RibD TIGRFAM: Riboflavin biosynthesis protein RibD%3B Riboflavin-specific deaminase%2C C-terminal~KEGG: afr:AFE_0297 riboflavin biosynthesis protein RibD~PFAM: Bacterial bifunctional deaminase-reductase%2C C-terminal%3B CMP/dCMP deaminase%2C zinc-binding gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2734 Acife_2735 Acife_2735 Acife_2735 2710854 2711345 - Transcriptional repressor nrdR TIGRFAM: Ribonucleotide reductase regulator NrdR-like~HAMAP: Transcriptional repressor nrdR~KEGG: afr:AFE_0296 transcriptional regulator NrdR~PFAM: ATP-cone gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2735 Acife_2736 Acife_2736 Acife_2736 2711352 2712596 - glycine hydroxymethyltransferase PFAM: Serine hydroxymethyltransferase~KEGG: afr:AFE_0295 serine hydroxymethyltransferase gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2736 Acife_2737 Acife_2737 Acife_2737 2712730 2713509 - hypothetical protein KEGG: afe:Lferr_0470 hypothetical protein gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2737 Acife_2738 Acife_2738 Acife_2738 2713705 2714856 + Homoserine O-acetyltransferase TIGRFAM: Homoserine O-acetyltransferase~HAMAP: Homoserine O-acetyltransferase~KEGG: afr:AFE_0293 homoserine O-acetyltransferase~PFAM: Alpha/beta hydrolase fold-1 gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2738 Acife_2739 Acife_2739 Acife_2739 2714853 2715458 + methionine biosynthesis protein MetW KEGG: afr:AFE_0292 methionine biosynthesis protein MetW~TIGRFAM: Methionine biosynthesis MetW~PFAM: Methionine biosynthesis MetW gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2739 Acife_2740 Acife_2740 Acife_2740 2715478 2716134 + Glutathione S-transferase domain-containing protein PFAM: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal~KEGG: afr:AFE_0291 glutathione S-transferase family protein gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2740 Acife_2741 Acife_2741 Acife_2741 2716182 2716967 + Ubiquinone/menaquinone biosynthesis methyltransferase ubiE TIGRFAM: UbiE/COQ5 methyltransferase~HAMAP: UbiE/COQ5 methyltransferase~KEGG: afr:AFE_0289 ubiquinone/menaquinone biosynthesis methlytransferase UbiE~PFAM: UbiE/COQ5 methyltransferase gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2741 Acife_2742 Acife_2742 Acife_2742 2717063 2719417 + 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase~HAMAP: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase~KEGG: afr:AFE_0288 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase~PFAM: Methionine synthase%2C vitamin-B12 independent%3B Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2742 Acife_2743 Acife_2743 Acife_2743 2719582 2720211 + carbonic anhydrase PFAM: Carbonic anhydrase~KEGG: afr:AFE_0287 carbonic anhydrase gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2743 Acife_2744 Acife_2744 Acife_2744 2720221 2721771 + sulphate transporter PFAM: Sulphate transporter~KEGG: afr:AFE_0286 sulfate transporter family protein gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2744 Acife_2745 Acife_2745 Acife_2745 2721879 2722190 + 50S ribosomal protein L21 TIGRFAM: Ribosomal protein L21~HAMAP: Ribosomal protein L21~KEGG: afr:AFE_0285 50S ribosomal protein L21~PFAM: Ribosomal protein L21 gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2745 Acife_2746 Acife_2746 Acife_2746 2722202 2722462 + 50S ribosomal protein L27 TIGRFAM: Ribosomal protein L27~HAMAP: Ribosomal protein L27~KEGG: afr:AFE_0284 50S ribosomal protein L27~PFAM: Ribosomal protein L27 gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2746 Acife_2747 Acife_2747 Acife_2747 2722517 2723641 + GTPase obg TIGRFAM: GTP-binding protein Obg/CgtA~HAMAP: GTPase obg~KEGG: afr:AFE_0283 GTP-binding protein Obg/CgtA~PFAM: GTP1/OBG subdomain%3B GTP-binding protein%2C HSR1-related gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2747 Acife_2748 Acife_2748 Acife_2748 2723638 2724768 + Glutamate 5-kinase SMART: Pseudouridine synthase/archaeosine transglycosylase~TIGRFAM: Glutamate 5-kinase%2C ProB-related~KEGG: afr:AFE_0281 glutamate 5-kinase~HAMAP: Glutamate 5-kinase~PFAM: Aspartate/glutamate/uridylate kinase%3B Pseudouridine synthase/archaeosine transglycosylase gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2748 Acife_2749 Acife_2749 Acife_2749 2724765 2725238 - ferric uptake regulator%2C Fur family PFAM: Ferric-uptake regulator~KEGG: afr:AFE_0282 ferric uptake regulation protein gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2749 Acife_2750 Acife_2750 Acife_2750 2725305 2725652 + SmpA/OmlA domain-containing protein PFAM: SmpA/OmlA~KEGG: afr:AFE_0279 lipoprotein%2C SmpA/OmlA family gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2750 Acife_2751 Acife_2751 Acife_2751 2725642 2726133 - cyclase/dehydrase PFAM: Streptomyces cyclase/dehydrase~KEGG: afr:AFE_0280 hypothetical protein gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2751 Acife_2752 Acife_2752 Acife_2752 2726143 2727312 - phospholipase D/transphosphatidylase KEGG: afe:Lferr_0455 phospholipase D/transphosphatidylase gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2752 Acife_2753 Acife_2753 Acife_2753 2727440 2727904 + SsrA-binding protein TIGRFAM: SsrA-binding protein~HAMAP: SsrA-binding protein~KEGG: afr:AFE_0277 SsrA-binding protein~PFAM: SsrA-binding protein gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2753 Acife_2754 Acife_2754 Acife_2754 2727897 2729594 + glycosyl transferase family 39 PFAM: Glycosyl transferase%2C family 39~KEGG: afr:AFE_0276 dolichyl-phosphate-mannose-protein mannosyltransferase family protein gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2754 Acife_2755 Acife_2755 Acife_2755 2729588 2729776 + pseudogene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2755 Acife_2756 Acife_2756 Acife_2756 2729773 2730285 + Disulfide bond formation protein DsbB PFAM: Disulphide bond formation protein DsbB~KEGG: afr:AFE_0274 disulfide bond formation protein B%2C putative gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2756 Acife_2757 Acife_2757 Acife_2757 2730320 2731453 - phosphoribosylaminoimidazole carboxylase%2C ATPase subunit KEGG: afr:AFE_0273 phosphoribosylaminoimidazole carboxylase%2C ATPase subunit~TIGRFAM: Phosphoribosylaminoimidazole carboxylase%2C ATPase subunit~PFAM: ATP-grasp fold%2C ATP-dependent carboxylate-amine ligase-type gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2757 Acife_2758 Acife_2758 Acife_2758 2731450 2731947 - phosphoribosylaminoimidazole carboxylase%2C catalytic subunit KEGG: afr:AFE_0272 phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase~PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2758 Acife_2759 Acife_2759 Acife_2759 2731989 2732681 + tRNA (guanine-N(7)-)-methyltransferase TIGRFAM: tRNA (guanine-N-7) methyltransferase~HAMAP: tRNA (guanine-N(7)-)-methyltransferase~KEGG: afe:Lferr_0448 tRNA (guanine-N(7)-)-methyltransferase~PFAM: tRNA (guanine-N-7) methyltransferase gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2759 Acife_2760 Acife_2760 Acife_2760 2732722 2732823 + pseudogene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2760 Acife_2761 Acife_2761 Acife_2761 2732911 2734083 - hopene-associated glycosyltransferase HpnB KEGG: afr:AFE_0266 glycosyl transferase%2C group 2 family protein~TIGRFAM: Glycosyl transferase%2C family 2%2C hopene-associated%2C HpnB~PFAM: Glycosyl transferase%2C family 2 gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2761 Acife_2762 Acife_2762 Acife_2762 2734080 2735210 - twitching motility protein KEGG: afr:AFE_0265 twitching motility protein PilT~TIGRFAM: Pilus retraction protein PilT~PFAM: Type II secretion system protein E gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2762 Acife_2763 Acife_2763 Acife_2763 2735220 2736269 - twitching motility protein TIGRFAM: Pilus retraction protein PilT~PFAM: Type II secretion system protein E~KEGG: afr:AFE_0264 twitching motility protein PilT~SMART: ATPase%2C AAA+ type%2C core gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2763 Acife_2764 Acife_2764 Acife_2764 2736371 2737042 + protein of unknown function UPF0001 KEGG: afr:AFE_0263 conserved hypothetical protein TIGR00044~TIGRFAM: pyridoxal phosphate-dependent enzyme%2C YBL036C type~PFAM: Alanine racemase%2C N-terminal gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2764 Acife_2765 Acife_2765 Acife_2765 2737039 2737866 + pyrroline-5-carboxylate reductase KEGG: afr:AFE_0262 pyrroline-5-carboxylate reductase~TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase~PFAM: NADP oxidoreductase%2C coenzyme F420-dependent gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2765 Acife_2766 Acife_2766 Acife_2766 2737863 2738141 + protein of unknown function YGGT PFAM: Protein of unknown function YGGT~KEGG: afr:AFE_0261 YGGT family protein gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2766 Acife_2767 Acife_2767 Acife_2767 2738166 2738516 + UPF0235 protein yggU TIGRFAM: Conserved hypothetical protein CHP00251~HAMAP: Protein of unknown function DUF167~KEGG: afr:AFE_0260 conserved hypothetical protein TIGR00251%2C putative~PFAM: Protein of unknown function DUF167 gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2767 Acife_2768 Acife_2768 Acife_2768 2738513 2739463 + Biotin synthase SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: Biotin synthase~KEGG: afr:AFE_0259 biotin synthase~HAMAP: Biotin synthase~PFAM: Biotin/thiamin synthesis-associated protein%3B Radical SAM gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2768 Acife_2769 Acife_2769 Acife_2769 2739505 2740074 - Lipid A 3-O-deacylase-related protein PFAM: Lipid A 3-O-deacylase-related~KEGG: afr:AFE_0258 hypothetical protein gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2769 Acife_2770 Acife_2770 Acife_2770 2740314 2741330 + secretion protein HlyD family protein PFAM: Secretion protein HlyD~KEGG: afr:AFE_0257 secretion protein%2C HlyD family gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2770 Acife_2771 Acife_2771 Acife_2771 2741340 2742203 - acetylglutamate kinase KEGG: afr:AFE_0256 acetylglutamate kinase~TIGRFAM: Acetylglutamate kinase~PFAM: Aspartate/glutamate/uridylate kinase gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2771 Acife_2772 Acife_2772 Acife_2772 2742200 2742847 - transcriptional regulator%2C TetR family PFAM: Transcriptional regulator%2C TetR-like%2C DNA-binding%2C bacterial/archaeal~KEGG: afr:AFE_0255 transcriptional regulator%2C TetR family gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2772 Acife_2773 Acife_2773 Acife_2773 2743035 2743973 + hypothetical protein KEGG: afr:AFE_0254 hypothetical protein gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2773 Acife_2774 Acife_2774 Acife_2774 2743966 2744277 + hypothetical protein KEGG: afe:Lferr_0430 hypothetical protein gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2774 Acife_2775 Acife_2775 Acife_2775 2744357 2744725 - hypothetical protein KEGG: afr:AFE_0253 hypothetical protein gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2775 Acife_2776 Acife_2776 Acife_2776 2744788 2745804 - oxidoreductase FAD/NAD(P)-binding domain protein PFAM: Oxidoreductase FAD/NAD(P)-binding%3B Oxidoreductase FAD-binding region%3B Ferredoxin~KEGG: afr:AFE_0252 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase%2C putative gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2776 Acife_2777 Acife_2777 Acife_2777 2745879 2746484 - Ribonuclease T SMART: Exonuclease~TIGRFAM: Ribonuclease T~KEGG: afr:AFE_0251 ribonuclease T~HAMAP: Ribonuclease T~PFAM: Exonuclease%2C RNase T/DNA polymerase III gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2777 Acife_2778 Acife_2778 Acife_2778 2746492 2747271 - Conserved hypothetical protein CHP00245 KEGG: afr:AFE_0250 hypothetical protein~TIGRFAM: Conserved hypothetical protein CHP00245~PFAM: Conserved hypothetical protein CHP00245 gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2778 Acife_2779 Acife_2779 Acife_2779 2747268 2747978 - arginyl-tRNA--protein transferase KEGG: afr:AFE_0249 arginine-tRNA--protein transferase~HAMAP: Arginine-tRNA-protein transferase%2C predicted%2C prokaryotic~PFAM: Arginine-tRNA-protein transferase%2C C-terminal%3B Arginine-tRNA-protein transferase%2C N-terminal gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2779 Acife_2780 Acife_2780 Acife_2780 2747981 2748700 - Leucyl/phenylalanyl-tRNA--protein transferase TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase~HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase~KEGG: afr:AFE_0248 leucyl/phenylalanyl-tRNA--protein transferase~PFAM: Leucyl/phenylalanyl-tRNA-protein transferase gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2780 Acife_2781 Acife_2781 Acife_2781 2748753 2749649 - peptidase M48 Ste24p PFAM: Peptidase M48%2C Ste24p%3B Peptidase M48B%2C HtpX peptidase N-terminal~KEGG: afr:AFE_0247 heat shock protein HtpX gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2781 Acife_2782 Acife_2782 Acife_2782 2749767 2750471 - Dethiobiotin synthetase KEGG: afr:AFE_0246 dethiobiotin synthetase~TIGRFAM: Dethiobiotin synthase~HAMAP: Dethiobiotin synthase gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2782 Acife_2783 Acife_2783 Acife_2783 2750468 2751346 - biotin biosynthesis protein BioC KEGG: afr:AFE_0245 biotin synthesis protein BioC~TIGRFAM: Biotin biosynthesis protein BioC~PFAM: Methyltransferase type 11 gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2783 Acife_2784 Acife_2784 Acife_2784 2751343 2752104 - alpha/beta hydrolase fold containing protein PFAM: Alpha/beta hydrolase fold-1~KEGG: afr:AFE_0244 BioH protein gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2784 Acife_2785 Acife_2785 Acife_2785 2752101 2753270 - 8-amino-7-oxononanoate synthase TIGRFAM: 8-amino-7-oxononanoate synthase~HAMAP: 8-amino-7-oxononanoate synthase~KEGG: afr:AFE_0243 8-amino-7-oxononanoate synthase~PFAM: Aminotransferase%2C class I/II gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2785 Acife_2786 Acife_2786 Acife_2786 2753387 2754100 + phosphoribosyltransferase PFAM: Phosphoribosyltransferase~KEGG: afr:AFE_0242 competence protein gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2786 Acife_2787 Acife_2787 Acife_2787 2754108 2754587 + RNA methyltransferase%2C TrmH family%2C group 2 KEGG: afr:AFE_0241 RNA methyltransferase%2C TrmH family%2C group 2~TIGRFAM: RNA methyltransferase TrmH%2C group 2~PFAM: tRNA/rRNA methyltransferase%2C SpoU gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2787 Acife_2788 Acife_2788 Acife_2788 2754741 2756849 + Sulphatase-modifying factor protein PFAM: Sulphatase-modifying factor%3B Methyltransferase type 11~KEGG: afr:AFE_0240 hypothetical protein gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2788 Acife_2789 Acife_2789 Acife_2789 2756846 2758003 + aminotransferase class I and II PFAM: Aminotransferase%2C class I/II~KEGG: afr:AFE_0239 aminotransferase%2C class II gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2789 Acife_2790 Acife_2790 Acife_2790 2758106 2759014 + lipid A biosynthesis acyltransferase PFAM: Bacterial lipid A biosynthesis acyltransferase~KEGG: afr:AFE_0238 lipid A biosynthesis lauroyl acyltransferase gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2790 Acife_2791 Acife_2791 Acife_2791 2759020 2760273 - Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein PFAM: Three-deoxy-D-manno-octulosonic-acid transferase%2C N-terminal~KEGG: afr:AFE_0237 3-deoxy-D-manno-octulosonic-acid transferase gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2791 Acife_2792 Acife_2792 Acife_2792 2760270 2760950 - protein tyrosine/serine phosphatase KEGG: afr:AFE_0236 hypothetical protein gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2792 Acife_2793 Acife_2793 Acife_2793 2760953 2761999 - lipopolysaccharide heptosyltransferase I KEGG: afr:AFE_0235 lipopolysaccharide heptosyltransferase 1~TIGRFAM: Lipopolysaccharide heptosyltransferase I~PFAM: Glycosyl transferase%2C family 9 gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2793 Acife_2794 Acife_2794 Acife_2794 2761996 2762766 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: afr:AFE_0234 lipopolysaccharide core biosynthesis glycosyl transferase gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2794 Acife_2795 Acife_2795 Acife_2795 2762766 2763977 - O-antigen polymerase family protein KEGG: afr:AFE_0232 O-antigen polymerase family protein gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2795 Acife_2796 Acife_2796 Acife_2796 2763974 2765077 - glycosyl transferase family 9 PFAM: Glycosyl transferase%2C family 9~KEGG: tal:Thal_0153 glycosyl transferase family 9 gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2796 Acife_2797 Acife_2797 Acife_2797 2765089 2765226 - hypothetical protein gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2797 Acife_2798 Acife_2798 Acife_2798 2765286 2766362 - glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: afe:Lferr_0406 group 1 glycosyl transferase gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2798 Acife_2799 Acife_2799 Acife_2799 2766359 2767075 - polysaccharide deacetylase PFAM: Polysaccharide deacetylase~KEGG: afr:AFE_0229 polysaccharide deacetylase family protein gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2799 Acife_2800 Acife_2800 Acife_2800 2767072 2768034 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: afr:AFE_0228 glycosyl transferase%2C group 2 family protein gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2800 Acife_2801 Acife_2801 Acife_2801 2768035 2769024 - mutator MutT protein KEGG: afr:AFE_0227 mutator MutT protein/thiamine-phosphate pyrophosphorylase family protein~TIGRFAM: Mutator MutT protein~PFAM: NUDIX hydrolase domain%3B Thiamine monophosphate synthase gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2801 Acife_2802 Acife_2802 Acife_2802 2769024 2770250 - Arginine biosynthesis bifunctional protein ArgJ TIGRFAM: Arginine biosynthesis protein ArgJ~HAMAP: Arginine biosynthesis protein ArgJ~KEGG: afr:AFE_0226 arginine biosynthesis bifunctional protein ArgJ~PFAM: Arginine biosynthesis protein ArgJ gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2802 Acife_2803 Acife_2803 Acife_2803 2770260 2773004 - Protein translocase subunit secA TIGRFAM: SecA protein~HAMAP: Protein translocase subunit secA~KEGG: afr:AFE_0225 preprotein translocase%2C SecA subunit~PFAM: SecA DEAD-like%3B SecA preprotein cross-linking region%3B SecA Wing/Scaffold%3B SEC-C motif gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2803 Acife_2804 Acife_2804 Acife_2804 2773088 2773567 + protein of unknown function DUF721 PFAM: Protein of unknown function DUF721~KEGG: afe:Lferr_0400 hypothetical protein gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2804 Acife_2805 Acife_2805 Acife_2805 2773507 2774472 - UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase~HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase~KEGG: afr:AFE_0223 UDP-3-0-acyl N-acetylglucosamine deacetylase~PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2805 Acife_2806 Acife_2806 Acife_2806 2774722 2775342 + Glutathione S-transferase domain-containing protein PFAM: Glutathione S-transferase%2C N-terminal%3B Glutathione S-transferase%2C C-terminal~KEGG: afr:AFE_0221 stringent starvation protein A gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2806 Acife_2807 Acife_2807 Acife_2807 2775344 2777071 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase/ligase~KEGG: afe:Lferr_0397 AMP-dependent synthetase and ligase gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2807 Acife_2808 Acife_2808 Acife_2808 2777081 2778451 + Polynucleotide adenylyltransferase region PFAM: Polynucleotide adenylyltransferase region~KEGG: afr:AFE_0218 polyA polymerase family protein gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2808 Acife_2809 Acife_2809 Acife_2809 2778396 2778662 - hypothetical protein KEGG: afr:AFE_0219 hypothetical protein gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2809 Acife_2810 Acife_2810 Acife_2810 2779475 2779930 + Protein mraZ TIGRFAM: MraZ~HAMAP: MraZ~KEGG: afr:AFE_0215 MraZ protein~PFAM: MraZ domain gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2810 Acife_2811 Acife_2811 Acife_2811 2779927 2780892 + Ribosomal RNA small subunit methyltransferase H TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~HAMAP: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW~KEGG: afr:AFE_0214 S-adenosyl-methyltransferase MraW~PFAM: S-adenosyl-L-methionine-dependent methyltransferase%2C MraW gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2811 Acife_2812 Acife_2812 Acife_2812 2780882 2781145 + cell division protein FtsL KEGG: afr:AFE_0213 cell division protein FtsL~TIGRFAM: Cell division protein%2C FtsL -like~PFAM: Cell division protein FtsL gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2812 Acife_2813 Acife_2813 Acife_2813 2781142 2782926 + penicillin-binding protein transpeptidase PFAM: Penicillin-binding protein%2C transpeptidase%3B Penicillin-binding protein%2C dimerisation domain~KEGG: afr:AFE_0212 peptidoglycan synthetase FtsI gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2813 Acife_2814 Acife_2814 Acife_2814 2782913 2784361 + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase~HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase~KEGG: afr:AFE_0211 UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2814 Acife_2815 Acife_2815 Acife_2815 2784358 2785710 + UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate/D-alanyl-D-alanyl ligase KEGG: afr:AFE_0210 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase~TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C N-terminal%3B Mur ligase%2C C-terminal gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2815 Acife_2816 Acife_2816 Acife_2816 2785710 2786792 + Phospho-N-acetylmuramoyl-pentapeptide-transferase TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase~HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase~KEGG: afr:AFE_0209 phospho-N-acetylmuramoyl-pentapeptide-transferase~PFAM: Glycosyl transferase%2C family 4%2C conserved region%3B Phospho-N-acetylmuramoyl-pentapeptide transferase%2C conserved site gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2816 Acife_2817 Acife_2817 Acife_2817 2786794 2788140 + UDP-N-acetylmuramoylalanine--D-glutamate ligase TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase~HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase~KEGG: afr:AFE_0208 UDP-N-acetylmuramoylalanine--D-glutamate ligase~PFAM: Mur ligase%2C central%3B Mur ligase%2C C-terminal gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2817 Acife_2818 Acife_2818 Acife_2818 2788137 2789309 + cell division protein FtsW KEGG: afr:AFE_0207 cell division protein FtsW~TIGRFAM: Cell division protein FtsW~PFAM: Cell cycle protein gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2818 Acife_2819 Acife_2819 Acife_2819 2789302 2790384 + UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TIGRFAM: N-acetylglucosaminyltransferase%2C MurG~HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase~KEGG: afr:AFE_0206 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase~PFAM: Glycosyl transferase%2C family 28%3B Glycosyl transferase%2C family 28%2C C-terminal gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2819 Acife_2820 Acife_2820 Acife_2820 2790377 2791771 + UDP-N-acetylmuramate--L-alanine ligase TIGRFAM: UDP-N-acetylmuramate-alanine ligase~HAMAP: UDP-N-acetylmuramate-alanine ligase~KEGG: afr:AFE_0205 UDP-N-acetylmuramate--alanine ligase~PFAM: Mur ligase%2C N-terminal%3B Mur ligase%2C central%3B Mur ligase%2C C-terminal gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2820 Acife_2821 Acife_2821 Acife_2821 2791768 2792655 + UDP-N-acetylenolpyruvoylglucosamine reductase TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase~HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase~KEGG: afr:AFE_0204 UDP-N-acetylenolpyruvoylglucosamine reductase~PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase%2C C-terminal%3B FAD linked oxidase%2C N-terminal gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2821 Acife_2822 Acife_2822 Acife_2822 2792648 2793574 + D-alanine--D-alanine ligase TIGRFAM: D-alanine--D-alanine ligase~HAMAP: D-alanine--D-alanine ligase~KEGG: afr:AFE_0203 D-alanine--D-alanine ligase~PFAM: D-alanine--D-alanine ligase%2C C-terminal%3B D-alanine--D-alanine ligase%2C N-terminal gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2822 Acife_2823 Acife_2823 Acife_2823 2793567 2794406 + cell division protein FtsQ PFAM: Cell division protein FtsQ%3B Polypeptide-transport-associated%2C FtsQ-type~KEGG: afr:AFE_0202 cell division protein FtsQ gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2823 Acife_2824 Acife_2824 Acife_2824 2794437 2795705 + cell division protein FtsA KEGG: afr:AFE_0201 cell division protein FtsA~TIGRFAM: Cell division protein family FtsA~PFAM: Cell division protein FtsA domain gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2824 Acife_2825 Acife_2825 Acife_2825 2795764 2796927 + cell division protein FtsZ KEGG: afr:AFE_0200 cell division protein FtsZ~TIGRFAM: Cell division protein FtsZ%2C N-terminal~PFAM: Tubulin/FtsZ%2C GTPase domain%3B Tubulin/FtsZ%2C 2-layer sandwich domain gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2825 Acife_2826 Acife_2826 Acife_2826 2796944 2797369 - leucine-rich repeat-containing protein KEGG: tkm:TK90_0226 leucine-rich repeat-containing protein gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2826 Acife_2827 Acife_2827 Acife_2827 2797423 2798280 - hypothetical protein KEGG: afr:AFE_0199 hypothetical protein gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2827 Acife_2828 Acife_2828 Acife_2828 2798553 2799014 + 3-dehydroquinate dehydratase TIGRFAM: Dehydroquinase%2C class II~HAMAP: Dehydroquinase%2C class II~KEGG: afr:AFE_0197 3-dehydroquinate dehydratase~PFAM: Dehydroquinase%2C class II gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2828 Acife_2829 Acife_2829 Acife_2829 2799034 2799510 + acetyl-CoA carboxylase%2C biotin carboxyl carrier protein KEGG: afr:AFE_0196 acetyl-CoA carboxylase%2C biotin carboxyl carrier protein~TIGRFAM: Acetyl-CoA biotin carboxyl carrier~PFAM: Biotin/lipoyl attachment gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2829 Acife_2830 Acife_2830 Acife_2830 2799503 2800849 + acetyl-CoA carboxylase%2C biotin carboxylase KEGG: afr:AFE_0195 acetyl-CoA carboxylase%2C biotin carboxylase~TIGRFAM: Acetyl-CoA carboxylase%2C biotin carboxylase~PFAM: Carbamoyl phosphate synthetase%2C large subunit%2C ATP-binding%3B Carbamoyl phosphate synthase%2C large subunit%2C N-terminal%3B Biotin carboxylase%2C C-terminal gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2830 Acife_2831 Acife_2831 Acife_2831 2800846 2801724 + Ribosomal protein L11 methyltransferase TIGRFAM: Ribosomal protein L11 methyltransferase~HAMAP: Ribosomal protein L11 methyltransferase~KEGG: afr:AFE_0194 ribosomal protein L11 methyltransferase~PFAM: Ribosomal L11 methyltransferase gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2831 Acife_2832 Acife_2832 Acife_2832 2801727 2802359 + hypothetical protein KEGG: afr:AFE_0193 MJ0042 family finger-like domain protein gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2832 Acife_2833 Acife_2833 Acife_2833 2802372 2802614 + transcriptional regulator%2C Fis family PFAM: Helix-turn-helix%2C Fis-type~KEGG: afr:AFE_0191 transcriptional regulator%2C Fis family gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2833 Acife_2834 Acife_2834 Acife_2834 2802596 2803261 - Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: afr:AFE_0192 transglycosylase%2C putative gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2834 Acife_2835 Acife_2835 Acife_2835 2803258 2803674 - Stringent starvation protein B PFAM: Stringent starvation protein B~KEGG: afr:AFE_0190 stringent starvation protein B gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2835 Acife_2836 Acife_2836 Acife_2836 2804131 2804913 + polysaccharide deacetylase PFAM: Polysaccharide deacetylase~KEGG: afr:AFE_0787 polysaccharide deacetylase family protein gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2836 Acife_2837 Acife_2837 Acife_2837 2804961 2806283 + FAD-binding monooxygenase PFAM: Monooxygenase%2C FAD-binding~KEGG: afr:AFE_0788 non-heme halogenase%2C putative gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2837 Acife_2838 Acife_2838 Acife_2838 2806286 2807350 + dioxygenase%2C putative KEGG: afr:AFE_0789 dioxygenase%2C putative gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2838 Acife_2839 Acife_2839 Acife_2839 2807634 2808062 + hypothetical protein KEGG: xac:XAC3351 hypothetical protein gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2839 Acife_2840 Acife_2840 Acife_2840 2808314 2809093 + phospholipid/glycerol acyltransferase KEGG: afr:AFE_0790 acyltransferase%2C putative~PFAM: Phospholipid/glycerol acyltransferase~SMART: Phospholipid/glycerol acyltransferase gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2840 Acife_2841 Acife_2841 Acife_2841 2809093 2809857 + glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: afr:AFE_0792 glycosyl transferase%2C group 2 gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2841 Acife_2842 Acife_2842 Acife_2842 2809887 2811185 - sodium/hydrogen exchanger PFAM: Cation/H+ exchanger~KEGG: afr:AFE_0791 Na+/H+ antiporter%2C putative gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2842 Acife_2843 Acife_2843 Acife_2843 2811202 2811924 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: afr:AFE_0793 3-ketoacyl-(acyl-carrier-protein) reductase gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2843 Acife_2844 Acife_2844 Acife_2844 2811917 2812375 - hypothetical protein KEGG: afr:AFE_0794 hypothetical protein gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2844 Acife_2845 Acife_2845 Acife_2845 2812366 2813175 - hypothetical protein KEGG: afr:AFE_0795 hypothetical protein gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2845 Acife_2846 Acife_2846 Acife_2846 2813193 2814386 - Beta-ketoacyl synthase PFAM: Beta-ketoacyl synthase%2C C-terminal%3B Beta-ketoacyl synthase%2C N-terminal~KEGG: afr:AFE_0796 3-oxoacyl-(acyl carrier protein) synthase I gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2846 Acife_2847 Acife_2847 Acife_2847 2814702 2814965 + acyl carrier protein%2C putative KEGG: afr:AFE_0797 acyl carrier protein%2C putative gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2847 Acife_2848 Acife_2848 Acife_2848 2814999 2817365 - hypothetical protein KEGG: afr:AFE_0798 hypothetical protein gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2848 Acife_2849 Acife_2849 Acife_2849 2817362 2818042 - putative transmembrane protein KEGG: afe:Lferr_0942 putative transmembrane protein gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2849 Acife_2850 Acife_2850 Acife_2850 2818039 2818998 - lipid A biosynthesis acyltransferase PFAM: Bacterial lipid A biosynthesis acyltransferase~KEGG: afe:Lferr_0943 lipid A biosynthesis acyltransferase gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2850 Acife_2851 Acife_2851 Acife_2851 2819001 2819288 - pseudogene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2851 Acife_2852 Acife_2852 Acife_2852 2819302 2820663 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase/ligase~KEGG: afr:AFE_0802 AMP-binding protein gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2852 Acife_2853 Acife_2853 Acife_2853 2820711 2821424 - hypothetical protein KEGG: afr:AFE_0803 hypothetical protein gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2853 Acife_2854 Acife_2854 Acife_2854 2821532 2821852 - hypothetical protein KEGG: afr:AFE_0804 hypothetical protein gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2854 Acife_2855 Acife_2855 Acife_2855 2821942 2822952 - Fructose-1%2C6-bisphosphatase class 1 KEGG: afr:AFE_0189 fructose-1%2C6-bisphosphatase~HAMAP: Fructose-1%2C6-bisphosphatase~PFAM: Fructose-1%2C6-bisphosphatase gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2855 Acife_2856 Acife_2856 Acife_2856 2822986 2823738 - protein of unknown function DUF1342 PFAM: Protein of unknown function DUF1342~KEGG: afr:AFE_0188 hypothetical protein gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2856 Acife_2857 Acife_2857 Acife_2857 2823855 2824457 - Dephospho-CoA kinase KEGG: afr:AFE_0187 dephospho-CoA kinase~TIGRFAM: Dephospho-CoA kinase~HAMAP: Dephospho-CoA kinase gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2857 Acife_2858 Acife_2858 Acife_2858 2824458 2825243 - peptidase A24A domain protein PFAM: Peptidase A24A%2C N-terminal%3B Peptidase A24A%2C prepilin type IV~KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2858 Acife_2859 Acife_2859 Acife_2859 2825255 2826613 - two component%2C sigma54 specific%2C transcriptional regulator%2C Fis family KEGG: afe:Lferr_0364 two component sigma-54 specific fis family transcriptional regulator~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver region%3B Helix-turn-helix%2C Fis-type~SMART: Signal transduction response regulator%2C receiver region%3B ATPase%2C AAA+ type%2C core gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2859 Acife_2860 Acife_2860 Acife_2860 2826610 2828208 - multi-sensor signal transduction histidine kinase KEGG: afr:AFE_0184 sensor protein PilS%2C putative~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B PAS fold~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2860 Acife_2861 Acife_2861 Acife_2861 2828332 2830041 - type IV-A pilus assembly ATPase PilB TIGRFAM: ATPase%2C type IV%2C pilus assembly%2C PilB~PFAM: Type II secretion system protein E%3B General secretory system II%2C protein E%2C N-terminal~KEGG: afr:AFE_0183 type IV pilus assembly protein~SMART: ATPase%2C AAA+ type%2C core gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2861 Acife_2862 Acife_2862 Acife_2862 2830011 2830910 - Shikimate dehydrogenase TIGRFAM: Quinate/shikimate 5-dehydrogenase~HAMAP: Shikimate dehydrogenase~KEGG: afr:AFE_0182 shikimate 5-dehydrogenase~PFAM: Shikimate dehydrogenase substrate binding%2C N-terminal%3B Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2862 Acife_2863 Acife_2863 Acife_2863 2830888 2832069 - Anhydro-N-acetylmuramic acid kinase KEGG: afr:AFE_0181 anhydro-N-acetylmuramic acid kinase~HAMAP: Anhydro-N-acetylmuramic acid kinase~PFAM: Anhydro-N-acetylmuramic acid kinase gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2863 Acife_2864 Acife_2864 Acife_2864 2832119 2832607 - peptidylprolyl isomerase FKBP-type PFAM: Peptidyl-prolyl cis-trans isomerase%2C FKBP-type~KEGG: afr:AFE_0180 peptidyl-prolyl cis-trans isomerase%2C FKBP-type gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2864 Acife_2865 Acife_2865 Acife_2865 2832670 2833683 - Ferrochelatase TIGRFAM: Ferrochelatase~HAMAP: Ferrochelatase~KEGG: afr:AFE_0179 ferrochelatase~PFAM: Ferrochelatase gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2865 Acife_2866 Acife_2866 Acife_2866 2833680 2834453 - exodeoxyribonuclease III Xth KEGG: afr:AFE_0178 exodeoxyribonuclease III~TIGRFAM: Exodeoxyribonuclease III xth%3B AP endonuclease%2C family 1~PFAM: Endonuclease/exonuclease/phosphatase gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2866 Acife_2867 Acife_2867 Acife_2867 2834459 2835061 - Glutathione S-transferase domain-containing protein PFAM: Glutathione S-transferase%2C N-terminal~KEGG: afr:AFE_0177 glutathione S-transferase family protein gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2867 Acife_2868 Acife_2868 Acife_2868 2835154 2835990 + protein of unknown function DUF519 PFAM: Protein of unknown function DUF519~KEGG: afr:AFE_0176 hypothetical protein gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2868 Acife_2869 Acife_2869 Acife_2869 2836065 2836349 + hypothetical protein KEGG: afr:AFE_0175 hypothetical protein gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2869 Acife_2870 Acife_2870 Acife_2870 2836362 2837123 + exodeoxyribonuclease III Xth KEGG: afr:AFE_0174 exodeoxyribonuclease III~TIGRFAM: Exodeoxyribonuclease III xth%3B AP endonuclease%2C family 1~PFAM: Endonuclease/exonuclease/phosphatase gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2870 Acife_2871 Acife_2871 Acife_2871 2837124 2838035 + protein-(glutamine-N5) methyltransferase%2C ribosomal protein L3-specific KEGG: afr:AFE_0173 ribosomal protein L3 N-methyltransferase~TIGRFAM: Ribosomal protein L3-specific%2C glutamine-N5-methyltransferase%3B Modification methylase HemK~PFAM: Methyltransferase small gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2871 Acife_2872 Acife_2872 Acife_2872 2838154 2839716 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_0171 drug resistance transporter%2Cputative%2C EmrB/QacA subfamily gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2872 Acife_2873 Acife_2873 Acife_2873 2839638 2840561 - MscS Mechanosensitive ion channel PFAM: Mechanosensitive ion channel MscS~KEGG: sde:Sde_3910 hypothetical protein gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2873 Acife_2874 Acife_2874 Acife_2874 2840665 2842404 + Arginyl-tRNA synthetase TIGRFAM: Arginyl-tRNA synthetase%2C class Ic~HAMAP: Arginyl-tRNA synthetase%2C class Ic~KEGG: afr:AFE_0170 arginyl-tRNA synthetase gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2874 Acife_2875 Acife_2875 Acife_2875 2842411 2843241 + Sporulation domain-containing protein PFAM: Sporulation/cell division region%2C bacteria~KEGG: afr:AFE_0168 hypothetical protein gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2875 Acife_2876 Acife_2876 Acife_2876 2843207 2843674 - protein of unknown function DUF1790 PFAM: Protein of unknown function DUF1790~KEGG: afr:AFE_0169 hypothetical protein gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2876 Acife_2877 Acife_2877 Acife_2877 2843671 2844477 - Ribosomal RNA small subunit methyltransferase A SMART: Ribosomal RNA adenine methylase transferase%2C N-terminal~TIGRFAM: Ribosomal RNA adenine dimethylase~KEGG: afe:Lferr_0346 dimethyladenosine transferase~HAMAP: Ribosomal RNA adenine dimethylase~PFAM: Ribosomal RNA adenine methylase transferase gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2877 Acife_2878 Acife_2878 Acife_2878 2844540 2845094 + HNH endonuclease KEGG: afr:AFE_0166 HNH endonuclease domain protein~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2878 Acife_2879 Acife_2879 Acife_2879 2845115 2846116 - 4-hydroxythreonine-4-phosphate dehydrogenase TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA~HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA~KEGG: afr:AFE_0165 4-hydroxythreonine-4-phosphate dehydrogenase~PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2879 Acife_2880 Acife_2880 Acife_2880 2846113 2846376 - RNA-binding S4 domain protein KEGG: afr:AFE_0164 S4 domain protein~PFAM: RNA-binding S4~SMART: RNA-binding S4 gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2880 Acife_2881 Acife_2881 Acife_2881 2846379 2847299 - ABC transporter related protein KEGG: afr:AFE_0163 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2881 Acife_2882 Acife_2882 Acife_2882 2847292 2847579 - hypothetical protein KEGG: afe:Lferr_0341 hypothetical protein gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2882 Acife_2883 Acife_2883 Acife_2883 2847606 2848235 - toluene tolerance family protein PFAM: Toluene tolerance~KEGG: afr:AFE_0161 toluene tolerance protein%2C putative gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2883 Acife_2884 Acife_2884 Acife_2884 2848248 2848709 - Mammalian cell entry related domain protein PFAM: Mammalian cell entry related~KEGG: afr:AFE_0160 mce-related protein gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2884 Acife_2885 Acife_2885 Acife_2885 2848724 2849506 - protein of unknown function DUF140 KEGG: afr:AFE_0159 toluene tolerance protein Ttg2B%2C putative~TIGRFAM: Protein of unknown function DUF140~PFAM: Protein of unknown function DUF140 gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2885 Acife_2886 Acife_2886 Acife_2886 2849510 2850334 - ABC transporter related protein KEGG: afr:AFE_0158 toluene ABC transporter%2C ATP-binding protein%2C putative~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2886 Acife_2887 Acife_2887 Acife_2887 2850645 2851046 + S-adenosylmethionine decarboxylase proenzyme TIGRFAM: S-adenosylmethionine decarboxylase proenzyme~HAMAP: S-adenosylmethionine decarboxylase proenzyme~KEGG: afr:AFE_0157 S-adenosylmethionine decarboxylase proenzyme~PFAM: S-adenosylmethionine decarboxylase%2C bacterial/archaeal gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2887 Acife_2888 Acife_2888 Acife_2888 2851167 2852003 + Spermidine synthase TIGRFAM: Spermine synthase~HAMAP: Spermidine synthase~KEGG: afr:AFE_0156 spermidine synthase~PFAM: Spermine synthase gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2888 Acife_2889 Acife_2889 Acife_2889 2852031 2852636 - Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: afr:AFE_0155 phosphoglycerate mutase family protein gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2889 Acife_2890 Acife_2890 Acife_2890 2852833 2854212 - putative two component%2C sigma54 specific%2C transcriptional regulator KEGG: afr:AFE_2955 sigma-54 dependent DNA-binding response regulator%2C putative~PFAM: RNA polymerase sigma factor 54%2C interaction%3B Signal transduction response regulator%2C receiver region~SMART: Signal transduction response regulator%2C receiver region%3B ATPase%2C AAA+ type%2C core gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2890 Acife_2891 Acife_2891 Acife_2891 2854218 2854538 - hypothetical protein KEGG: afr:AFE_2956 hypothetical protein gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2891 Acife_2892 Acife_2892 Acife_2892 2854519 2856159 - integral membrane sensor signal transduction histidine kinase KEGG: afe:Lferr_2570 integral membrane sensor signal transduction histidine kinase~PFAM: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain~SMART: ATP-binding region%2C ATPase-like%3B Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor region%3B HAMP linker domain gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2892 Acife_2893 Acife_2893 Acife_2893 2856159 2856431 - Fe(2+)-trafficking protein KEGG: afr:AFE_2959 hypothetical protein~HAMAP: Fe(II) trafficking protein YggX~PFAM: Fe(II) trafficking protein YggX gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2893 Acife_2894 Acife_2894 Acife_2894 2856563 2857672 - A/G-specific adenine glycosylase TIGRFAM: A/G-specific adenine glycosylase MutY%2C bacterial form~PFAM: HhH-GPD domain%3B Endonuclease III-like%2C iron-sulphur cluster loop motif~KEGG: afr:AFE_3015 A/G-specific adenine glycosylase~SMART: HhH-GPD domain gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2894 Acife_2895 Acife_2895 Acife_2895 2857669 2858913 - hypothetical protein KEGG: afr:AFE_3017 hypothetical protein gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2895 Acife_2896 Acife_2896 Acife_2896 2858933 2860645 - phosphoenolpyruvate-protein phosphotransferase KEGG: afr:AFE_3018 phosphoenolpyruvate-protein phosphotransferase~TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase~PFAM: PEP-utilising enzyme%3B Phosphotransferase system%2C PEP-utilising enzyme%2C N-terminal%3B PEP-utilising enzyme%2C mobile region gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2896 Acife_2897 Acife_2897 Acife_2897 2860642 2860914 - Phosphotransferase system%2C phosphocarrier protein HPr KEGG: afr:AFE_3019 phosphocarrier protein HPr~TIGRFAM: Phosphotransferase system%2C phosphocarrier HPr protein~PFAM: Phosphotransferase system%2C phosphocarrier HPr protein gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2897 Acife_2898 Acife_2898 Acife_2898 2860946 2861368 - PTS system fructose subfamily IIA component PFAM: Phosphotransferase system%2C fructose subfamily IIA component~KEGG: afr:AFE_3020 PTS system%2C IIA component%2C putative gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2898 Acife_2899 Acife_2899 Acife_2899 2861365 2862264 - UPF0042 nucleotide-binding protein yhbJ HAMAP: ATPase%2C P-loop-containing~KEGG: afr:AFE_3021 ATPase gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2899 Acife_2900 Acife_2900 Acife_2900 2862264 2863196 - HPr kinase PFAM: Signal transduction serine kinase/phosphorylase%2C HPr(Ser) kinase%2C C-terminal~KEGG: afr:AFE_3022 HPr(Ser) kinase/phosphatase gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2900 Acife_2901 Acife_2901 Acife_2901 2863251 2863697 - putative PTS IIA-like nitrogen-regulatory protein PtsN PFAM: Phosphotransferase system%2C phosphoenolpyruvate-dependent sugar EIIA 2~KEGG: afr:AFE_3023 phosphoenolpyruvate-dependent sugar PTS system%2C EIIA component gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2901 Acife_2902 Acife_2902 Acife_2902 2863704 2864045 - sigma 54 modulation protein/ribosomal protein S30EA KEGG: afr:AFE_3024 ribosomal subunit interface protein~TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein~PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2902 Acife_2903 Acife_2903 Acife_2903 2864157 2865584 - RNA polymerase%2C sigma 54 subunit%2C RpoN KEGG: afr:AFE_3025 RNA polymerase sigma-54 factor~TIGRFAM: RNA polymerase sigma factor 54~PFAM: RNA polymerase sigma factor 54%2C DNA-binding%3B RNA polymerase sigma factor 54%2C core-binding%3B RNA polymerase sigma factor 54 gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2903 Acife_2904 Acife_2904 Acife_2904 2865597 2866322 - ABC transporter related protein KEGG: afr:AFE_3026 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2904 Acife_2905 Acife_2905 Acife_2905 2866319 2866849 - lipopolysaccharide transport periplasmic protein LptA KEGG: afr:AFE_3027 hypothetical protein~TIGRFAM: Cell envelope biogenesis YhbN~PFAM: OstA-like protein gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2905 Acife_2906 Acife_2906 Acife_2906 2866839 2867393 - protein of unknown function DUF1239 PFAM: Protein of unknown function DUF1239~KEGG: afr:AFE_3028 hypothetical protein gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2906 Acife_2907 Acife_2907 Acife_2907 2867434 2867988 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family TIGRFAM: Phosphatase KdsC%3B HAD-superfamily hydrolase%2C subfamily IIIA~KEGG: afr:AFE_3029 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2907 Acife_2908 Acife_2908 Acife_2908 2867985 2868917 - KpsF/GutQ family protein TIGRFAM: KpsF/GutQ~PFAM: Sugar isomerase (SIS)%3B Cystathionine beta-synthase%2C core~KEGG: afr:AFE_3030 sugar isomerase%2C KpsF/GutQ family~SMART: Cystathionine beta-synthase%2C core gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2908 Acife_2909 Acife_2909 Acife_2909 2868981 2869259 - hypothetical protein KEGG: afe:Lferr_2639 hypothetical protein gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2909 Acife_2910 Acife_2910 Acife_2910 2869292 2869726 - hypothetical protein KEGG: afr:AFE_3031 hypothetical protein gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2910 Acife_2911 Acife_2911 Acife_2911 2869716 2870405 - Nucleotidyl transferase PFAM: Nucleotidyl transferase~KEGG: afr:AFE_3032 nucleotidyltransferase family protein gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2911 Acife_2912 Acife_2912 Acife_2912 2870378 2871403 - aminoglycoside phosphotransferase PFAM: Aminoglycoside phosphotransferase~KEGG: afr:AFE_3033 phosphotransferase%2C putative gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2912 Acife_2913 Acife_2913 Acife_2913 2871433 2873628 + Organic solvent tolerance protein PFAM: Organic solvent tolerance protein%3B OstA-like protein~KEGG: afe:Lferr_2643 organic solvent tolerance protein gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2913 Acife_2914 Acife_2914 Acife_2914 2873628 2875061 + Chaperone surA KEGG: afe:Lferr_2644 SurA domain~HAMAP: Chaperone surA~PFAM: SurA N-terminal%3B Peptidyl-prolyl cis-trans isomerase%2C PpiC-type gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2914 Acife_2915 Acife_2915 Acife_2915 2875069 2875866 + ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: afr:AFE_3036 ABC-2 type transporter gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2915 Acife_2916 Acife_2916 Acife_2916 2875964 2876218 + BolA family protein PFAM: BolA-like protein~KEGG: afr:AFE_3037 BolA family protein gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2916 Acife_2917 Acife_2917 Acife_2917 2876254 2876586 + glutaredoxin-like protein KEGG: afr:AFE_3038 glutaredoxin-related protein~TIGRFAM: Glutaredoxin-related protein~PFAM: Glutaredoxin gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2917 Acife_2918 Acife_2918 Acife_2918 2876596 2877870 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase~KEGG: afr:AFE_3039 UDP-N-acetylglucosamine 1-carboxyvinyltransferase~PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase%2C core gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2918 Acife_2919 Acife_2919 Acife_2919 2877867 2878514 + ATP phosphoribosyltransferase TIGRFAM: ATP phosphoribosyltransferase%2C catalytic region~HAMAP: ATP phosphoribosyltransferase~KEGG: afr:AFE_3040 ATP phosphoribosyltransferase~PFAM: ATP phosphoribosyltransferase%2C catalytic region gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2919 Acife_2920 Acife_2920 Acife_2920 2878511 2879812 + Histidinol dehydrogenase TIGRFAM: Histidinol dehydrogenase%2C prokaryotic-type~HAMAP: Histidinol dehydrogenase%2C prokaryotic-type~KEGG: afr:AFE_3041 histidinol dehydrogenase~PFAM: Histidinol dehydrogenase%2C prokaryotic-type gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2920 Acife_2921 Acife_2921 Acife_2921 2879809 2880888 + Histidinol-phosphate aminotransferase TIGRFAM: Histidinol-phosphate aminotransferase~HAMAP: Histidinol-phosphate aminotransferase~KEGG: afr:AFE_3042 histidinol-phosphate aminotransferase~PFAM: Aminotransferase%2C class I/II gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2921 Acife_2922 Acife_2922 Acife_2922 2880885 2881484 + Imidazoleglycerol-phosphate dehydratase KEGG: afr:AFE_3043 imidazoleglycerol-phosphate dehydratase~HAMAP: Imidazoleglycerol-phosphate dehydratase~PFAM: Imidazoleglycerol-phosphate dehydratase gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2922 Acife_2923 Acife_2923 Acife_2923 2881481 2882152 + Imidazole glycerol phosphate synthase subunit hisH TIGRFAM: Imidazole glycerol phosphate synthase%2C subunit H~HAMAP: Imidazole glycerol phosphate synthase%2C subunit H~KEGG: afr:AFE_3044 imidazole glycerol phosphate synthase subunit HisH~PFAM: Glutamine amidotransferase class-I%2C C-terminal gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2923 Acife_2924 Acife_2924 Acife_2924 2882192 2882920 + 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase~HAMAP: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase~KEGG: afr:AFE_3045 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase~PFAM: Histidine biosynthesis gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2924 Acife_2925 Acife_2925 Acife_2925 2882925 2883686 + Imidazole glycerol phosphate synthase subunit hisF TIGRFAM: Histidine biosynthesis%2C HisF~HAMAP: Imidazole glycerol phosphate synthase subunit hisF~KEGG: afr:AFE_3046 imidazole glycerol phosphate synthase subunit HisF~PFAM: Histidine biosynthesis gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2925 Acife_2926 Acife_2926 Acife_2926 2883766 2884464 + Histidine biosynthesis bifunctional protein hisIE PFAM: Phosphoribosyl-AMP cyclohydrolase%3B Phosphoribosyl-ATP pyrophosphohydrolase~TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase~HAMAP: Histidine biosynthesis bifunctional protein hisIE~KEGG: afr:AFE_3047 phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2926 Acife_2927 Acife_2927 Acife_2927 2884539 2884757 + Sec-independent protein translocase protein tatA/E-like protein TIGRFAM: Twin-arginine translocation protein TatA/E~HAMAP: Twin-arginine translocation protein TatA/E~KEGG: afr:AFE_3048 twin-arginine translocation protein%2C TatA/E family~PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2927 Acife_2928 Acife_2928 Acife_2928 2884764 2885135 + twin-arginine translocation protein%2C TatB subunit KEGG: afr:AFE_3049 twin-arginine translocation protein TatB~TIGRFAM: Twin-arginine translocation protein TatB~PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2928 Acife_2929 Acife_2929 Acife_2929 2885196 2886032 + Sec-independent protein translocase%2C TatC subunit KEGG: afr:AFE_3050 sec-independent protein translocase TatC~TIGRFAM: Twin arginine-targeting protein translocase%2C TatC~PFAM: Sec-independent periplasmic protein translocase gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2929 Acife_2930 Acife_2930 Acife_2930 2886210 2887394 + glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1~KEGG: afr:AFE_1357 glycosyl transferase%2C group 1 gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2930 Acife_2931 Acife_2931 Acife_2931 2887391 2887747 + hypothetical protein KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2931 Acife_2932 Acife_2932 Acife_2932 2888085 2888288 + cold-shock DNA-binding domain protein KEGG: afr:AFE_0590 cold-shock protein~PFAM: Cold-shock protein%2C DNA-binding~SMART: Cold shock protein gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2932 Acife_2933 Acife_2933 Acife_2933 2888590 2888850 - hypothetical protein manually curated gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2933 Acife_2934 Acife_2934 Acife_2934 2888912 2891908 + diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TIGRFAM: Diguanylate cyclase%2C predicted%3B PAS%3B Twin-arginine translocation pathway%2C signal sequence~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B PAS fold%3B GAF%3B PAS fold-4~KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted%3B PAS%3B PAC motif gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2934 Acife_2935 Acife_2935 Acife_2935 2891954 2893987 + Low affinity potassium transport system protein kup KEGG: afr:AFE_1753 potassium uptake protein~HAMAP: Low affinity potassium transport system protein kup~PFAM: K+ potassium transporter gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2935 Acife_2936 Acife_2936 Acife_2936 2894005 2894433 - hypothetical protein KEGG: afr:AFE_0096 hypothetical protein gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2936 Acife_2937 Acife_2937 Acife_2937 2894436 2894855 - hypothetical protein KEGG: afr:AFE_2648 hypothetical protein gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2937 Acife_2938 Acife_2938 Acife_2938 2894940 2895080 + hypothetical protein gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2938 Acife_2939 Acife_2939 Acife_2939 2895119 2896393 - amidohydrolase PFAM: Amidohydrolase 1~KEGG: afr:AFE_3058 dihydroorotase%2C multifunctional complex type gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2939 Acife_2940 Acife_2940 Acife_2940 2896399 2897382 - Aspartate carbamoyltransferase TIGRFAM: Aspartate carbamoyltransferase%2C eukaryotic~HAMAP: Aspartate carbamoyltransferase~KEGG: afr:AFE_3059 aspartate carbamoyltransferase catalytic subunit~PFAM: Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding%3B Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding region gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2940 Acife_2941 Acife_2941 Acife_2941 2897379 2897885 - phosphoribosyltransferase PFAM: Phosphoribosyltransferase~KEGG: afr:AFE_3060 PyrR bifunctional protein gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2941 Acife_2942 Acife_2942 Acife_2942 2897882 2898313 - Holliday junction resolvase SMART: Resolvase%2C RNase H-like fold~TIGRFAM: Resolvase%2C holliday junction-type%2C YqgF-like~KEGG: afr:AFE_3061 hypothetical protein~HAMAP: Holliday junction resolvase~PFAM: Resolvase%2C holliday junction-type%2C YqgF-like gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2942 Acife_2943 Acife_2943 Acife_2943 2898306 2898863 - UPF0301 protein yqgE KEGG: afr:AFE_3062 hypothetical protein~HAMAP: Protein of unknown function DUF179~PFAM: Protein of unknown function DUF179 gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2943 Acife_2944 Acife_2944 Acife_2944 2899070 2899990 - hypothetical protein KEGG: afr:AFE_1275 hypothetical protein gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2944 Acife_2945 Acife_2945 Acife_2945 2900005 2900214 - hypothetical protein KEGG: afr:AFE_1274 hypothetical protein gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2945 Acife_2946 Acife_2946 Acife_2946 2900892 2901101 - hypothetical protein KEGG: tin:Tint_1902 hypothetical protein gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2946 Acife_2947 Acife_2947 Acife_2947 2901256 2901447 - hypothetical protein KEGG: app:CAP2UW1_4512 hypothetical protein gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2947 Acife_2948 Acife_2948 Acife_2948 2901444 2902238 - AAA ATPase KEGG: app:CAP2UW1_4513 AAA ATPase gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2948 Acife_2949 Acife_2949 Acife_2949 2902241 2903563 - Integrase catalytic region PFAM: Integrase%2C catalytic core~KEGG: app:CAP2UW1_4407 integrase catalytic subunit gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2949 Acife_2950 Acife_2950 Acife_2950 2903693 2904226 - hypothetical protein KEGG: app:CAP2UW1_4515 hypothetical protein gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2950 Acife_2951 Acife_2951 Acife_2951 2904542 2906059 - hypothetical protein KEGG: afr:AFE_1292 hypothetical protein gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2951 Acife_2952 Acife_2952 Acife_2952 2906127 2906309 + hypothetical protein gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2952 Acife_2953 Acife_2953 Acife_2953 2906338 2906781 + hypothetical protein KEGG: afr:AFE_1287 hypothetical protein gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2953 Acife_2954 Acife_2954 Acife_2954 2906866 2907453 - hypothetical protein KEGG: afr:AFE_1325 hypothetical protein gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2954 Acife_2955 Acife_2955 Acife_2955 2907864 2908832 + hypothetical protein KEGG: afr:AFE_1323 hypothetical protein gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2955 Acife_2956 Acife_2956 Acife_2956 2908855 2909334 + hypothetical protein gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2956 Acife_2957 Acife_2957 Acife_2957 2909338 2909664 + UPF0145 protein ybjQ KEGG: afr:AFE_1321 hypothetical protein~HAMAP: UPF0145 protein ybjQ~PFAM: Uncharacterised protein family UPF0145 gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2957 Acife_2958 Acife_2958 Acife_2958 2909693 2910370 - hypothetical protein KEGG: afr:AFE_1223 hypothetical protein gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2958 Acife_2959 Acife_2959 Acife_2959 2910391 2910687 - transcriptional modulator of MazE/toxin%2C MazF KEGG: geo:Geob_2001 transcriptional modulator of MazE/toxin%2C MazF gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2959 Acife_2960 Acife_2960 Acife_2960 2910681 2910917 - SpoVT/AbrB domain-containing protein PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: lbl:LBL_2676 proteic killer gene system protein%2C suppressor of inhibitory function of MazF gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2960 Acife_2961 Acife_2961 Acife_2961 2911033 2911458 - hypothetical protein gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2961 Acife_2962 Acife_2962 Acife_2962 2911455 2912072 - hypothetical protein KEGG: abm:ABSDF1778 hypothetical protein gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2962 Acife_2963 Acife_2963 Acife_2963 2912111 2912761 - hypothetical protein gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2963 Acife_2964 Acife_2964 Acife_2964 2912767 2913222 - protein of unknown function DUF29 PFAM: Protein of unknown function DUF29~KEGG: pay:PAU_03739 hypothetical protein gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2964 Acife_2965 Acife_2965 Acife_2965 2913236 2913457 - hypothetical protein gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2965 Acife_2966 Acife_2966 Acife_2966 2913478 2914128 - hypothetical protein gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2966 Acife_2967 Acife_2967 Acife_2967 2914259 2914672 - PilT protein domain protein PFAM: PilT protein%2C N-terminal~KEGG: afr:AFE_2129 virulence-associated protein%2C putative gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2967 Acife_2968 Acife_2968 Acife_2968 2914669 2914899 - virulence-associated protein%2C putative KEGG: afr:AFE_2130 virulence-associated protein%2C putative gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2968 Acife_2969 Acife_2969 Acife_2969 2915033 2915539 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: gpb:HDN1F_22990 GCN5-related N-acetyltransferase gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2969 Acife_2970 Acife_2970 Acife_2970 2915536 2915814 - protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: gpb:HDN1F_23000 hypothetical protein gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2970 Acife_2971 Acife_2971 Acife_2971 2915918 2919280 - TraG domain-containing protein PFAM: TraG-like%2C N-terminal~KEGG: afr:AFE_1068 pilus assembly protein TraG%2C putative gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2971 Acife_2972 Acife_2972 Acife_2972 2919305 2920924 - TraH family protein PFAM: Type IV conjugative transfer system protein TraH~KEGG: afr:AFE_1067 pilus assembly protein TraH%2C putative gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2972 Acife_2973 Acife_2973 Acife_2973 2920935 2921900 - pilus assembly protein TraF%2C putative KEGG: afr:AFE_1066 pilus assembly protein TraF%2C putative gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2973 Acife_2974 Acife_2974 Acife_2974 2921897 2922409 - Lytic transglycosylase catalytic PFAM: Lytic transglycosylase-like%2C catalytic~KEGG: afr:AFE_1065 conjugal transfer protein%2C putative gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2974 Acife_2975 Acife_2975 Acife_2975 2922529 2922651 + hypothetical protein gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2975 Acife_2976 Acife_2976 Acife_2976 2922638 2922904 + hypothetical protein gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2976 Acife_2977 Acife_2977 Acife_2977 2922909 2923046 + hypothetical protein gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2977 Acife_2978 Acife_2978 Acife_2978 2923055 2923228 + hypothetical protein gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2978 Acife_2979 Acife_2979 Acife_2979 2923267 2924187 - hypothetical protein KEGG: afr:AFE_1255 hypothetical protein gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2979 Acife_2980 Acife_2980 Acife_2980 2924187 2926601 - metal-dependent phosphohydrolase HD region SMART: Metal-dependent phosphohydrolase%2C HD region~KEGG: afr:AFE_1254 hypothetical protein gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2980 Acife_2981 Acife_2981 Acife_2981 2926841 2928178 + transposase IS4 family protein PFAM: Transposase%2C IS4-like~KEGG: npu:Npun_BR216 hypothetical protein gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2981 Acife_2982 Acife_2982 Acife_2982 2928182 2929090 + hypothetical protein KEGG: dat:HRM2_05840 hypothetical protein gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2982 Acife_2983 Acife_2983 Acife_2983 2929138 2929482 - hypothetical protein gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2983 Acife_2984 Acife_2984 Acife_2984 2929494 2930273 - hypothetical protein manually curated~KEGG: afr:AFE_1253 hypothetical protein gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2984 Acife_2985 Acife_2985 Acife_2985 2930422 2931837 - HNH endonuclease KEGG: afr:AFE_1023 HNH endonuclease domain protein~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2985 Acife_2986 Acife_2986 Acife_2986 2932129 2932416 - hypothetical protein gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2986 Acife_2987 Acife_2987 Acife_2987 2932409 2934238 - lipoprotein%2C putative KEGG: afr:AFE_1251 lipoprotein%2C putative gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2987 Acife_2988 Acife_2988 Acife_2988 2934318 2934728 - single-strand binding protein KEGG: afr:AFE_2845 single-strand binding protein~TIGRFAM: Single-strand DNA-binding~PFAM: Primosome PriB/single-strand DNA-binding gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2988 Acife_2989 Acife_2989 Acife_2989 2934955 2935905 - hypothetical protein KEGG: afr:AFE_1257 hypothetical protein gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2989 Acife_2990 Acife_2990 Acife_2990 2935899 2937263 - DNA topoisomerase type IA central domain protein KEGG: afr:AFE_1258 DNA topoisomerase domain protein~PFAM: DNA topoisomerase%2C type IA%2C central~SMART: DNA topoisomerase%2C type IA%2C domain 2 gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2990 Acife_2991 Acife_2991 Acife_2991 2937393 2937848 + hypothetical protein KEGG: afr:AFE_1288 hypothetical protein gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2991 Acife_2992 Acife_2992 Acife_2992 2938021 2938284 + hypothetical protein gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2992 Acife_2993 Acife_2993 Acife_2993 2938423 2939346 + ATPase associated with various cellular activities AAA_5 KEGG: afr:AFE_1297 cobalamin biosynthesis protein%2C CobS family~PFAM: ATPase associated with various cellular activities%2C AAA-5~SMART: ATPase%2C AAA+ type%2C core gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2993 Acife_2994 Acife_2994 Acife_2994 2939346 2939441 + hypothetical protein gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2994 Acife_2995 Acife_2995 Acife_2995 2939463 2939825 + hypothetical protein gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2995 Acife_2996 Acife_2996 Acife_2996 2939896 2940216 + hypothetical protein gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2996 Acife_2997 Acife_2997 Acife_2997 2940342 2940791 + hypothetical protein gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2997 Acife_2998 Acife_2998 Acife_2998 2940859 2941419 + peptidase M50 PFAM: Peptidase M50~KEGG: afr:AFE_1024 membrane-associated zinc metalloprotease%2C putative gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2998 Acife_2999 Acife_2999 Acife_2999 2941548 2941760 + hypothetical protein gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_2999 Acife_3000 Acife_3000 Acife_3000 2941802 2942191 + hypothetical protein KEGG: afr:AFE_1045 hypothetical protein gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3000 Acife_3001 Acife_3001 Acife_3001 2942178 2942306 + hypothetical protein gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3001 Acife_3002 Acife_3002 Acife_3002 2942308 2943117 + hypothetical protein KEGG: afr:AFE_1283 hypothetical protein gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3002 Acife_3003 Acife_3003 Acife_3003 2943127 2944046 + pseudogene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3003 Acife_3004 Acife_3004 Acife_3004 2944050 2945015 + 5'-3' exonuclease%2C resolvase-like domain-containing protein KEGG: bvi:Bcep1808_6806 5'-3' exonuclease~PFAM: 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B 5'-3' exonuclease%2C SAM-fold domain~SMART: 5'-3' exonuclease%2C N-terminal%3B Helix-hairpin-helix motif%2C class 2 gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3004 Acife_3005 Acife_3005 Acife_3005 2944999 2945514 + hypothetical protein KEGG: afr:AFE_1060 hypothetical protein gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3005 Acife_3006 Acife_3006 Acife_3006 2945548 2946207 + Fertility inhibition FinO-like protein PFAM: Fertility inhibition FinO-like gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3006 Acife_3007 Acife_3007 Acife_3007 2946161 2946511 + histone family protein DNA-binding protein KEGG: afr:AFE_1584 DNA-binding protein HU family protein~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3007 Acife_3008 Acife_3008 Acife_3008 2946514 2946795 + histone family protein DNA-binding protein KEGG: afr:AFE_1070 DNA-binding protein%2C HU family~PFAM: Histone-like bacterial DNA-binding protein~SMART: Histone-like bacterial DNA-binding protein gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3008 Acife_3009 Acife_3009 Acife_3009 2946860 2947465 - hypothetical protein gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3009 Acife_3010 Acife_3010 Acife_3010 2947490 2948383 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: afr:AFE_1145 tyrosine recombinase%2C phage integrase family gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3010 Acife_3011 Acife_3011 Acife_3011 2948580 2948936 + hypothetical protein KEGG: afr:AFE_1146 hypothetical protein gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3011 Acife_3012 Acife_3012 Acife_3012 2948923 2949468 + hypothetical protein KEGG: afr:AFE_1943 DsbG domain protein gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3012 Acife_3013 Acife_3013 Acife_3013 2949479 2949988 + hypothetical protein gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3013 Acife_3014 Acife_3014 Acife_3014 2950554 2951984 + UbiA prenyltransferase PFAM: UbiA prenyltransferase~KEGG: nde:NIDE3581 putative UbiA family prenyltransferase gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3014 Acife_3015 Acife_3015 Acife_3015 2951981 2953288 + FAD linked oxidase domain protein PFAM: FAD linked oxidase%2C N-terminal~KEGG: gpb:HDN1F_16410 oxidoreductase gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3015 Acife_3016 Acife_3016 Acife_3016 2953291 2954028 + short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: mca:MCA2567 short chain dehydrogenase gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3016 Acife_3017 Acife_3017 Acife_3017 2954058 2956277 + hypothetical protein KEGG: hypothetical protein gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3017 Acife_3018 Acife_3018 Acife_3018 2956343 2957296 + NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: aav:Aave_0060 NAD-dependent epimerase/dehydratase gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3018 Acife_3019 Acife_3019 Acife_3019 2957304 2958590 + amine oxidase PFAM: Amine oxidase~KEGG: meh:M301_1240 amine oxidase gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3019 Acife_3020 Acife_3020 Acife_3020 2958601 2959017 + hypothetical protein KEGG: hha:Hhal_1553 hypothetical protein gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3020 Acife_3021 Acife_3021 Acife_3021 2959014 2959124 + hypothetical protein gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3021 Acife_3022 Acife_3022 Acife_3022 2959100 2959369 - hypothetical protein gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3022 Acife_3023 Acife_3023 Acife_3023 2959419 2960081 - NERD domain protein PFAM: NERD~KEGG: afr:AFE_1109 hypothetical protein gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3023 Acife_3024 Acife_3024 Acife_3024 2960078 2960860 - hypothetical protein gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3024 Acife_3025 Acife_3025 Acife_3025 2960857 2961150 - hypothetical protein gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3025 Acife_3026 Acife_3026 Acife_3026 2961193 2961402 - hypothetical protein gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3026 Acife_3027 Acife_3027 Acife_3027 2961423 2961767 - hypothetical protein KEGG: afr:AFE_1108 hypothetical protein gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3027 Acife_3028 Acife_3028 Acife_3028 2961764 2962297 - hypothetical protein KEGG: afr:AFE_1107 hypothetical protein gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3028 Acife_3029 Acife_3029 Acife_3029 2962294 2962806 - hypothetical protein KEGG: afr:AFE_1020 hypothetical protein gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3029 Acife_3030 Acife_3030 Acife_3030 2962796 2963353 - hypothetical protein KEGG: xfn:XfasM23_2243 hypothetical protein gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3030 Acife_3031 Acife_3031 Acife_3031 2963353 2964603 - conserved domain protein%2C putative KEGG: afr:AFE_1104 conserved domain protein%2C putative gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3031 Acife_3032 Acife_3032 Acife_3032 2964603 2965610 - hypothetical protein KEGG: afr:AFE_1103 hypothetical protein gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3032 Acife_3033 Acife_3033 Acife_3033 2965621 2966679 - hypothetical protein KEGG: afr:AFE_1100 hypothetical protein gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3033 Acife_3034 Acife_3034 Acife_3034 2966716 2967057 - transcriptional modulator of MazE/toxin%2C MazF PFAM: PemK-like protein~KEGG: afr:AFE_1099 ChpA protein gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3034 Acife_3035 Acife_3035 Acife_3035 2967057 2967296 - transcriptional regulator/antitoxin%2C MazE PFAM: Transcription regulator AbrB/SpoV%2C predicted~KEGG: afr:AFE_1098 PemI family protein gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3035 Acife_3036 Acife_3036 Acife_3036 2967379 2970438 - conjugal transfer protein TraN%2C putative KEGG: afr:AFE_1097 conjugal transfer protein TraN%2C putative gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3036 Acife_3037 Acife_3037 Acife_3037 2970442 2971701 - TraU family protein PFAM: TraU~KEGG: afr:AFE_1096 conjugal transfer protein TraU%2C putative gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3037 Acife_3038 Acife_3038 Acife_3038 2971703 2972968 - Type-F conjugative transfer system pilin assembly protein TrbC PFAM: Type-F conjugative transfer system pilin assembly protein TrbC~KEGG: afr:AFE_1095 pilus assembly protein TraW%2C putative gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3038 Acife_3039 Acife_3039 Acife_3039 2972965 2973765 - hypothetical protein KEGG: afr:AFE_1094 hypothetical protein gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3039 Acife_3040 Acife_3040 Acife_3040 2973779 2974840 - hypothetical protein manually curated~KEGG: afr:AFE_1093 hypothetical protein gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3040 Acife_3041 Acife_3041 Acife_3041 2974854 2975378 - Peptidase S26%2C conserved region PFAM: Peptidase S26%2C conserved region~KEGG: afr:AFE_1091 conjugation signal peptidase TraF%2C putative gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3041 Acife_3042 Acife_3042 Acife_3042 2975371 2975901 - hypothetical protein KEGG: afr:AFE_1090 hypothetical protein gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3042 Acife_3043 Acife_3043 Acife_3043 2975898 2978492 - type-IV secretion system protein TraC TIGRFAM: Type-IV secretion system protein TraC~KEGG: afr:AFE_1089 type-IV secretion system protein TraC gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3043 Acife_3044 Acife_3044 Acife_3044 2978489 2979175 - thiol:disulfide interchange protein%2C DsbA family KEGG: afr:AFE_1088 thiol:disulfide interchange protein%2C DsbA family gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3044 Acife_3045 Acife_3045 Acife_3045 2979172 2980374 - type II secretion system protein E PFAM: Type II secretion system protein E~KEGG: afr:AFE_1087 type II/IV secretion system protein gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3045 Acife_3046 Acife_3046 Acife_3046 2980374 2981201 - thiol:disulfide interchange domain protein KEGG: afr:AFE_1085 thiol:disulfide interchange domain protein gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3046 Acife_3047 Acife_3047 Acife_3047 2981201 2981605 - conjugal transfer protein TraA%2C putative KEGG: afr:AFE_1084 conjugal transfer protein TraA%2C putative gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3047 Acife_3048 Acife_3048 Acife_3048 2981649 2982179 - type IV conjugative transfer system protein TraV KEGG: afr:AFE_1082 conjugal transfer protein TraV%2C putative~TIGRFAM: Type IV secretion system%2C TraV~PFAM: Type IV secretion system%2C TraV gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3048 Acife_3049 Acife_3049 Acife_3049 2982176 2983735 - conjugal transfer protein%2C putative KEGG: afr:AFE_1081 conjugal transfer protein%2C putative gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3049 Acife_3050 Acife_3050 Acife_3050 2983729 2984895 - TraK lipoprotein%2C putative KEGG: afr:AFE_1080 TraK lipoprotein%2C putative gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3050 Acife_3051 Acife_3051 Acife_3051 2984892 2985500 - type IV conjugative transfer system protein TraE TIGRFAM: TraE~KEGG: afr:AFE_1079 type IV conjugative transfer system protein TraE gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3051 Acife_3052 Acife_3052 Acife_3052 2985497 2985775 - type IV conjugative transfer system protein TraL TIGRFAM: Type IV conjugative transfer system protein TraL~KEGG: afr:AFE_1078 type IV conjugative transfer system protein TraL gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3052 Acife_3053 Acife_3053 Acife_3053 2985763 2986530 - hypothetical protein KEGG: afr:AFE_1077 hypothetical protein gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3053 Acife_3054 Acife_3054 Acife_3054 2986592 2987962 - HNH endonuclease KEGG: afr:AFE_1023 HNH endonuclease domain protein~PFAM: HNH endonuclease~SMART: HNH nuclease gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3054 Acife_3055 Acife_3055 Acife_3055 2988249 2988557 - hypothetical protein KEGG: afr:AFE_1076 hypothetical protein gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3055 Acife_3056 Acife_3056 Acife_3056 2988560 2989708 - hypothetical protein KEGG: afr:AFE_1075 hypothetical protein gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3056 Acife_3057 Acife_3057 Acife_3057 2989701 2989952 - hypothetical protein KEGG: afr:AFE_1074 hypothetical protein gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3057 Acife_3058 Acife_3058 Acife_3058 2989942 2990292 - hypothetical protein gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3058 Acife_3059 Acife_3059 Acife_3059 2990351 2991376 - hypothetical protein KEGG: afr:AFE_1249 hypothetical protein gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3059 Acife_3060 Acife_3060 Acife_3060 2991546 2992394 + hypothetical protein KEGG: afr:AFE_1064 hypothetical protein gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3060 Acife_3061 Acife_3061 Acife_3061 2992657 2994327 + zinc-binding CMP/dCMP deaminase PFAM: CMP/dCMP deaminase%2C zinc-binding~KEGG: adn:Alide_0478 cmp/dcmp deaminase zinc-binding protein gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3061 Acife_3062 Acife_3062 Acife_3062 2994299 2994496 + hypothetical protein gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3062 Acife_3063 Acife_3063 Acife_3063 2994559 2994720 - pseudogene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3063 Acife_3064 Acife_3064 Acife_3064 2995063 2995686 - hypothetical protein manually curated~KEGG: afr:AFE_1256 hypothetical protein gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3064 Acife_3065 Acife_3065 Acife_3065 2996012 2996389 - hypothetical protein gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3065 Acife_3066 Acife_3066 Acife_3066 2996386 2996649 - hypothetical protein KEGG: afr:AFE_1021 hypothetical protein gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3066 Acife_3067 Acife_3067 Acife_3067 2996731 2998860 - DNA topoisomerase I TIGRFAM: DNA topoisomerase I%2C bacterial-type~PFAM: DNA topoisomerase%2C type IA%2C central%3B Toprim domain~KEGG: afr:AFE_1013 DNA topoisomerase I%2C putative~SMART: DNA topoisomerase%2C type IA%2C DNA-binding%3B DNA topoisomerase%2C type IA%2C domain 2%3B Toprim domain%2C subgroup gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3067 Acife_3068 Acife_3068 Acife_3068 2998938 2999267 - hypothetical protein KEGG: afr:AFE_1243 hypothetical protein gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3068 Acife_3069 Acife_3069 Acife_3069 2999309 2999674 - hypothetical protein gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3069 Acife_3070 Acife_3070 Acife_3070 2999646 3000911 - LexA DNA-binding domain protein PFAM: LexA DNA-binding region~KEGG: bvi:Bcep1808_7375 hypothetical protein gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3070 Acife_3071 Acife_3071 Acife_3071 3001162 3001383 - hypothetical protein gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3071 Acife_3072 Acife_3072 Acife_3072 3001383 3001628 - hypothetical protein gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3072 Acife_3073 Acife_3073 Acife_3073 3001742 3002143 + hypothetical protein KEGG: cko:CKO_01905 hypothetical protein gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3073 Acife_3074 Acife_3074 Acife_3074 3002386 3002655 + phage transcriptional regulator%2C AlpA PFAM: Prophage CP4-57 regulatory~KEGG: pst:PSPTO_3429 DNA-binding protein gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3074 Acife_3075 Acife_3075 Acife_3075 3002662 3003843 - integrase family protein PFAM: Integrase%2C catalytic core%2C phage~KEGG: ddc:Dd586_3778 integrase family protein gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3075 Acife_3076 Acife_3076 Acife_3076 3004093 3005031 - Glutathione synthetase TIGRFAM: Glutathione synthetase%2C prokaryotic~HAMAP: Glutathione synthetase%2C prokaryotic~KEGG: afr:AFE_3063 glutathione synthetase~PFAM: Prokaryotic glutathione synthetase%2C ATP-binding%3B Prokaryotic glutathione synthetase%2C N-terminal gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3076 Acife_3077 Acife_3077 Acife_3077 3005028 3006338 - glutamate/cysteine ligase KEGG: afr:AFE_3064 glutamate--cysteine ligase~TIGRFAM: Glutamate--cysteine ligase GshA~PFAM: Glutamate--cysteine ligase GshA gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3077 Acife_3078 Acife_3078 Acife_3078 3006349 3007509 - 2-methylcitrate synthase/citrate synthase II KEGG: afr:AFE_3065 citrate synthase~TIGRFAM: 2-methylcitrate synthase/citrate synthase type I~PFAM: Citrate synthase-like gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3078 Acife_3079 Acife_3079 Acife_3079 3007654 3008028 - Iron--sulfur cluster insertion protein erpA TIGRFAM: FeS cluster insertion~HAMAP: Iron--sulfur cluster insertion protein erpA~KEGG: afr:AFE_3067 iron-sulfur cluster assembly accessory protein~PFAM: FeS cluster biogenesis gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3079 Acife_3080 Acife_3080 Acife_3080 3008179 3011124 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B 2-oxoacid dehydrogenase acyltransferase%2C catalytic domain%3B E3 binding%3B Biotin/lipoyl attachment%3B Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation~KEGG: afr:AFE_3068 pyruvate dehydrogenase complex%2C E2 and E3 components gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3080 Acife_3081 Acife_3081 Acife_3081 3011225 3012205 - Transketolase central region PFAM: Transketolase-like%2C pyrimidine-binding domain%3B Transketolase%2C C-terminal~KEGG: afr:AFE_3069 pyruvate dehydrogenase%2C E1 component%2C pyruvate dehydrogenase beta subunit gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3081 Acife_3082 Acife_3082 Acife_3082 3012193 3013179 - pyruvate dehydrogenase (acetyl-transferring) E1 component%2C alpha subunit KEGG: afr:AFE_3070 pyruvate dehydrogenase complex%2C E1 component%2C pyruvate dehydrogenase alpha subunit~TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component%2C alpha subunit%2C subgroup y~PFAM: Dehydrogenase%2C E1 component gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3082 Acife_3083 Acife_3083 Acife_3083 3013664 3014842 - hypothetical protein KEGG: afe:Lferr_1890 hypothetical protein gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3083 Acife_3084 Acife_3084 Acife_3084 3015102 3015428 - hypothetical protein KEGG: afr:AFE_3072 hypothetical protein gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3084 Acife_3085 Acife_3085 Acife_3085 3015681 3016715 - N-acetyl-gamma-glutamyl-phosphate reductase TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase~HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase~KEGG: afr:AFE_3073 N-acetyl-gamma-glutamyl-phosphate reductase~PFAM: Semialdehyde dehydrogenase%2C NAD-binding%3B Semialdehyde dehydrogenase%2C dimerisation region gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3085 Acife_3086 Acife_3086 Acife_3086 3016795 3017181 - ribosomal protein S9 PFAM: Ribosomal protein S9~KEGG: afr:AFE_3074 ribosomal protein S9 gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3086 Acife_3087 Acife_3087 Acife_3087 3017194 3017622 - ribosomal protein L13 KEGG: afr:AFE_3075 50S ribosomal protein L13~TIGRFAM: Ribosomal protein L13%2C bacterial-type~PFAM: Ribosomal protein L13 gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3087 Acife_3088 Acife_3088 Acife_3088 3017665 3017865 - hypothetical protein KEGG: mca:MCA2653 hypothetical protein gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3088 Acife_3089 Acife_3089 Acife_3089 3017962 3018174 - hypothetical protein KEGG: afr:AFE_3078 hypothetical protein gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3089 Acife_3090 Acife_3090 Acife_3090 3018261 3018860 - nitroreductase PFAM: Nitroreductase-like~KEGG: afr:AFE_3079 nitroreductase family protein gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3090 Acife_3091 Acife_3091 Acife_3091 3019168 3020334 + HI0933 family protein KEGG: smt:Smal_1621 hypothetical protein~TIGRFAM: HI0933-like protein~PFAM: HI0933-like protein gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3091 Acife_3092 Acife_3092 Acife_3092 3025763 3026983 - Tyrosyl-tRNA synthetase SMART: RNA-binding S4~TIGRFAM: Tyrosyl-tRNA synthetase%2C class Ib%2C bacterial/mitochondrial~KEGG: afr:AFE_3085 tyrosyl-tRNA synthetase~HAMAP: Tyrosyl-tRNA synthetase~PFAM: Aminoacyl-tRNA synthetase%2C class Ib%3B RNA-binding S4 gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3092 Acife_3093 Acife_3093 Acife_3093 3027090 3029381 - ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC KEGG: afr:AFE_3086 plasma-membrane proton-efflux P-type ATPase%2C putative~TIGRFAM: ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter~PFAM: ATPase%2C P-type%2C ATPase-associated region%3B ATPase%2C P-type cation-transporter%2C N-terminal%3B Haloacid dehalogenase-like hydrolase gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3093 Acife_3094 Acife_3094 Acife_3094 3029506 3029625 + hypothetical protein gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3094 Acife_3095 Acife_3095 Acife_3095 3029622 3030005 + Aspartate 1-decarboxylase TIGRFAM: Aspartate decarboxylase~HAMAP: Aspartate decarboxylase~KEGG: afr:AFE_3089 aspartate 1-decarboxylase~PFAM: Aspartate decarboxylase gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3095 Acife_3096 Acife_3096 Acife_3096 3030018 3031241 + major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_3090 hypothetical protein gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3096 Acife_3097 Acife_3097 Acife_3097 3031396 3032082 + GTP-binding protein engB TIGRFAM: GTP-binding protein%2C ribosome biogenesis%2C YsxC~HAMAP: GTP-binding protein%2C ribosome biogenesis%2C YsxC~KEGG: afr:AFE_3092 ribosome biogenesis GTP-binding protein YsxC~PFAM: GTP-binding protein%2C HSR1-related gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3097 Acife_3098 Acife_3098 Acife_3098 3032148 3033410 + Ion transport 2 domain protein PFAM: Ion transport 2%3B Regulator of K+ conductance%2C N-terminal~KEGG: afr:AFE_3093 voltage-gated potassium channel gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3098 Acife_3099 Acife_3099 Acife_3099 3033413 3036112 - DNA polymerase I TIGRFAM: DNA polymerase 1~PFAM: DNA-directed DNA polymerase%2C family A%2C palm domain%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B 5'-3' exonuclease%2C SAM-fold domain%3B 3'-5' exonuclease~KEGG: afr:AFE_3094 DNA polymerase I~SMART: DNA-directed DNA polymerase%2C family A%2C palm domain%3B 5'-3' exonuclease%2C N-terminal%3B Helix-hairpin-helix motif%2C class 2%3B 3'-5' exonuclease gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3099 Acife_3100 Acife_3100 Acife_3100 3036182 3036901 + Conserved hypothetical protein CHP00730 KEGG: afr:AFE_3095 conserved hypothetical protein TIGR00730~TIGRFAM: Conserved hypothetical protein CHP00730~PFAM: Conserved hypothetical protein CHP00730 gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3100 Acife_3101 Acife_3101 Acife_3101 3036922 3037257 + hypothetical protein KEGG: afr:AFE_3096 hypothetical protein gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3101 Acife_3102 Acife_3102 Acife_3102 3037271 3038203 + Homoserine kinase TIGRFAM: Homoserine kinase ThrB~HAMAP: Homoserine kinase~KEGG: afr:AFE_3097 homoserine kinase~PFAM: Aminoglycoside phosphotransferase gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3102 Acife_3103 Acife_3103 Acife_3103 3038383 3038790 - competence protein ComEA helix-hairpin-helix repeat protein KEGG: afr:AFE_3100 competence protein ComEA helix-hairpin-helix repeat protein~TIGRFAM: Competence protein ComEA%2C helix-hairpin-helix region~PFAM: Helix-hairpin-helix motif gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3103 Acife_3104 Acife_3104 Acife_3104 3038808 3040937 - UvrD/REP helicase PFAM: DNA helicase%2C UvrD/REP type~KEGG: afr:AFE_3101 DNA helicase II gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3104 Acife_3105 Acife_3105 Acife_3105 3041053 3041991 + chaperone DnaJ domain protein KEGG: afr:AFE_3102 curved DNA-binding protein~PFAM: Chaperone DnaJ%2C C-terminal%3B Heat shock protein DnaJ%2C N-terminal~SMART: Heat shock protein DnaJ%2C N-terminal gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3105 Acife_3106 Acife_3106 Acife_3106 3042015 3042311 + MerR family transcriptional regulator KEGG: afe:Lferr_2701 MerR family transcriptional regulator gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3106 Acife_3107 Acife_3107 Acife_3107 3042299 3042526 + pseudogene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3107 Acife_3108 Acife_3108 Acife_3108 3042536 3044266 + PHP domain protein KEGG: afr:AFE_3104 DNA polymerase X family protein~PFAM: PHP%2C C-terminal%3B Nucleotidyltransferase~SMART: DNA-directed DNA polymerase%2C family X%3B Helix-hairpin-helix DNA-binding motif%2C class 1%3B Polymerase/histidinol phosphatase%2C N-terminal gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3108 Acife_3109 Acife_3109 Acife_3109 3044326 3045192 - alpha/beta hydrolase fold containing protein PFAM: Alpha/beta hydrolase fold-1~KEGG: afr:AFE_2217 hydrolase%2C alpha/beta hydrolase fold family gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3109 Acife_3110 Acife_3110 Acife_3110 3045244 3045345 - hypothetical protein gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3110 Acife_3111 Acife_3111 Acife_3111 3045342 3046001 - FMN-binding negative transcriptional regulator PFAM: Negative transcriptional regulator~KEGG: afr:AFE_2006 transcriptional regulator%2C putative gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3111 Acife_3112 Acife_3112 Acife_3112 3045988 3046659 - transglutaminase domain-containing protein PFAM: Transglutaminase-like~KEGG: afr:AFE_2007 hypothetical protein gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3112 Acife_3113 Acife_3113 Acife_3113 3046686 3047156 - Polyketide cyclase/dehydrase PFAM: Polyketide cyclase/dehydrase~KEGG: afr:AFE_2804 hypothetical protein gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3113 Acife_3114 Acife_3114 Acife_3114 3047156 3047701 - NADPH-dependent FMN reductase PFAM: NADPH-dependent FMN reductase~KEGG: afr:AFE_2803 FMN reductase%2C NADPH-dependent gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3114 Acife_3115 Acife_3115 Acife_3115 3047787 3048269 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: hna:Hneap_1663 GCN5-related N-acetyltransferase gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3115 Acife_3116 Acife_3116 Acife_3116 3048354 3048683 - small multidrug resistance protein PFAM: Small multidrug resistance protein~KEGG: afr:AFE_2802 multidrug resistance protein%2C SMR family gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3116 Acife_3117 Acife_3117 Acife_3117 3048706 3048942 - pseudogene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3117 Acife_3118 Acife_3118 Acife_3118 3049285 3049713 - UPF0310 protein KEGG: mci:Mesci_1735 hypothetical protein~HAMAP: UPF0310 protein~PFAM: Uncharacterised protein family UPF0310 gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3118 Acife_3119 Acife_3119 Acife_3119 3049710 3050081 - Glyoxalase/bleomycin resistance protein/dioxygenase PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase~KEGG: afe:Lferr_1669 hypothetical protein gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3119 Acife_3120 Acife_3120 Acife_3120 3050182 3050871 - transcriptional regulator KEGG: rah:Rahaq_4788 transcriptional regulator gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3120 Acife_3121 Acife_3121 Acife_3121 3050933 3051046 - hypothetical protein gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3121 Acife_3122 Acife_3122 Acife_3122 3051250 3051510 + protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: app:CAP2UW1_4576 hypothetical protein gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3122 Acife_3123 Acife_3123 Acife_3123 3051511 3052008 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: cyj:Cyan7822_5076 GCN5-like N-acetyltransferase gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3123 Acife_3124 Acife_3124 Acife_3124 3052005 3052388 + ankyrin KEGG: cch:Cag_1796 ankyrin gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3124 Acife_3125 Acife_3125 Acife_3125 3052410 3052736 - nitrogen regulatory protein P-II KEGG: tbd:Tbd_2652 nitrogen regulatory protein P-II gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3125 Acife_3126 Acife_3126 Acife_3126 3052733 3055897 - UPF0753 protein KEGG: nha:Nham_4323 hypothetical protein~HAMAP: UPF0753 protein~PFAM: Protein of unknown function DUF2309 gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3126 Acife_3127 Acife_3127 Acife_3127 3055870 3056643 - hypothetical protein KEGG: tbd:Tbd_2654 hypothetical protein gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3127 Acife_3128 Acife_3128 Acife_3128 3056645 3058333 - NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH:ubiquinone/plastoquinone oxidoreductase%3B NADH:ubiquinone oxidoreductase%2C chain 5/L%2C N-terminal~KEGG: tbd:Tbd_2655 NADH dehydrogenase gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3128 Acife_3129 Acife_3129 Acife_3129 3058361 3058780 - pseudogene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3129 Acife_3130 Acife_3130 Acife_3130 3058865 3059035 - pseudogene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3130 Acife_3131 Acife_3131 Acife_3131 3059032 3060213 - ketose-bisphosphate aldolase class-II PFAM: Ketose-bisphosphate aldolase%2C class-II%3B Stress responsive alpha-beta barrel~KEGG: afe:Lferr_1374 ketose-bisphosphate aldolase class-II gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3131 Acife_3132 Acife_3132 Acife_3132 3060339 3062690 - von Willebrand factor type A KEGG: afr:AFE_1677 von Willebrand factor type A domain protein~PFAM: von Willebrand factor%2C type A~SMART: von Willebrand factor%2C type A gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3132 Acife_3133 Acife_3133 Acife_3133 3062706 3063509 - p30 protein KEGG: afr:AFE_1678 p30 protein gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3133 Acife_3134 Acife_3134 Acife_3134 3063540 3063794 - hypothetical protein KEGG: afr:AFE_1679 hypothetical protein gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3134 Acife_3135 Acife_3135 Acife_3135 3063785 3064420 - Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: afe:Lferr_1378 cobyrinic acid ac-diamide synthase gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3135 Acife_3136 Acife_3136 Acife_3136 3064457 3064735 - hypothetical protein KEGG: afr:AFE_1681 hypothetical protein gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3136 Acife_3137 Acife_3137 Acife_3137 3064732 3065175 - Ferritin Dps family protein PFAM: Ferritin/Dps protein~KEGG: afr:AFE_1682 bacterioferritin gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3137 Acife_3138 Acife_3138 Acife_3138 3065189 3065527 - microcompartments protein PFAM: Microcompartment protein%2C bacteria~KEGG: afe:Lferr_1381 microcompartments protein gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3138 Acife_3139 Acife_3139 Acife_3139 3065573 3065869 - microcompartments protein PFAM: Microcompartment protein%2C bacteria~KEGG: afr:AFE_1684 carboxysome shell peptide gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3139 Acife_3140 Acife_3140 Acife_3140 3065900 3066166 - carboxysome peptide B KEGG: afr:AFE_1686 carboxysome peptide B~TIGRFAM: Carboxysome peptide B~PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3140 Acife_3141 Acife_3141 Acife_3141 3066177 3066425 - carboxysome peptide A KEGG: afr:AFE_1687 carboxysome peptide A~TIGRFAM: Carboxysome peptide A~PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3141 Acife_3142 Acife_3142 Acife_3142 3066422 3068032 - carboxysome shell carbonic anhydrase KEGG: afr:AFE_1688 carboxysome shell carbonic anhydrase~TIGRFAM: Carboxysome shell carbonic anhydrase~PFAM: Carboxysome shell carbonic anhydrase gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3142 Acife_3143 Acife_3143 Acife_3143 3068088 3070388 - carboxysome structural protein CsoS2 KEGG: afe:Lferr_1387 carboxysome structural protein CsoS2 gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3143 Acife_3144 Acife_3144 Acife_3144 3070459 3070791 - ribulose bisphosphate carboxylase small chain PFAM: Ribulose bisphosphate carboxylase%2C small chain~KEGG: afr:AFE_1690 ribulose bisphosphate carboxylase%2C small subunit gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3144 Acife_3145 Acife_3145 Acife_3145 3070883 3072304 - Ribulose bisphosphate carboxylase large chain KEGG: afr:AFE_1691 ribulose bisophosphate carboxylase~HAMAP: Ribulose bisphosphate carboxylase large chain~PFAM: Ribulose bisphosphate carboxylase%2C large subunit%2C C-terminal%3B Ribulose bisphosphate carboxylase%2C large subunit%2C N-terminal gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3145 Acife_3146 Acife_3146 Acife_3146 3072383 3073366 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: afr:AFE_1692 rubisco operon transcriptional regulator gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3146 Acife_3147 Acife_3147 Acife_3147 3074152 3074364 - hypothetical protein KEGG: afr:AFE_0812 hypothetical protein gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3147 Acife_3148 Acife_3148 Acife_3148 3074453 3075031 - hypothetical protein KEGG: afr:AFE_2734 hypothetical protein gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3148 Acife_3149 Acife_3149 Acife_3149 3075063 3076460 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_0813 major facilitator family transporter gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3149 Acife_3150 Acife_3150 Acife_3150 3076918 3077811 - Cl- channel voltage-gated family protein PFAM: Chloride channel%2C voltage gated~KEGG: afr:AFE_0814 voltage-gated chloride channel gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3150 Acife_3151 Acife_3151 Acife_3151 3077825 3079672 - Cl- channel voltage-gated family protein PFAM: Chloride channel%2C voltage gated~KEGG: afe:Lferr_0957 chloride channel core protein gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3151 Acife_3152 Acife_3152 Acife_3152 3079763 3080686 + transcriptional regulator%2C LysR family PFAM: LysR%2C substrate-binding%3B HTH transcriptional regulator%2C LysR~KEGG: afe:Lferr_0958 LysR family transcriptional regulator gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3152 Acife_3153 Acife_3153 Acife_3153 3080646 3080951 - pseudogene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3153 Acife_3154 Acife_3154 Acife_3154 3080977 3082116 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afe:Lferr_1533 major facilitator superfamily protein gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3154 Acife_3155 Acife_3155 Acife_3155 3082113 3083630 - GMC oxidoreductase PFAM: Glucose-methanol-choline oxidoreductase%2C C-terminal%3B FAD dependent oxidoreductase~KEGG: afe:Lferr_1534 FAD dependent oxidoreductase gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3155 Acife_3156 Acife_3156 Acife_3156 3083633 3084418 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: afr:AFE_2225 glucose 1-dehydrogenase%2C putative gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3156 Acife_3157 Acife_3157 Acife_3157 3084415 3086778 - Glucodextranase N PFAM: Glucodextranase N%3B Glycoside hydrolase 15-related~KEGG: afr:AFE_2224 glycosyl hydrolase%2C family 15 gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3157 Acife_3158 Acife_3158 Acife_3158 3087015 3089612 - diguanylate cyclase/phosphodiesterase TIGRFAM: Diguanylate cyclase%2C predicted%3B Twin-arginine translocation pathway%2C signal sequence~PFAM: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted~KEGG: dar:Daro_3990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)~SMART: Diguanylate phosphodiesterase%2C predicted%3B Diguanylate cyclase%2C predicted gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3158 Acife_3159 Acife_3159 Acife_3159 3089813 3090079 - pseudogene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3159 Acife_3160 Acife_3160 Acife_3160 3090275 3091048 + hypothetical protein KEGG: ana:alr7162 hypothetical protein gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3160 Acife_3161 Acife_3161 Acife_3161 3091436 3092944 - major facilitator superfamily MFS_1 PFAM: Major facilitator superfamily MFS-1~KEGG: afr:AFE_0922 drug resistance transporter%2C EmrB/QacA family gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3161 Acife_3162 Acife_3162 Acife_3162 3093228 3094286 + protein of unknown function UCP012641 PFAM: Uncharacterised conserved protein UCP012641~KEGG: hna:Hneap_2071 protein of unknown function UCP012641 gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3162 Acife_3163 Acife_3163 Acife_3163 3094322 3094432 + pseudogene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3163 Acife_3164 Acife_3164 Acife_3164 3095090 3095514 - pseudogene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3164 Acife_3165 Acife_3165 Acife_3165 3095504 3095764 - prevent-host-death family protein KEGG: afr:AFE_3174 prevent-host-death family protein gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3165 Acife_3166 Acife_3166 Acife_3166 3096015 3096899 - Integrase catalytic region KEGG: pna:Pnap_0429 integrase catalytic subunit~manually curated~PFAM: Integrase%2C catalytic core gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3166 Acife_3167 Acife_3167 Acife_3167 3096896 3097183 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911~KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3167 Acife_3168 Acife_3168 Acife_3168 3097305 3097794 + pseudogene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3168 Acife_3169 Acife_3169 Acife_3169 3097853 3098248 + transposase family protein manually curated~KEGG: afe:Lferr_0145 transposase family protein gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3169 Acife_3170 Acife_3170 Acife_3170 3098353 3098898 - hypothetical protein KEGG: afr:AFE_0876 hypothetical protein gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3170 Acife_3171 Acife_3171 Acife_3171 3099231 3100115 - Integrase catalytic region KEGG: pna:Pnap_0429 integrase catalytic subunit~manually curated~PFAM: Integrase%2C catalytic core gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3171 Acife_3172 Acife_3172 Acife_3172 3100112 3100399 - transposase IS3/IS911 family protein PFAM: Transposase IS3/IS911~KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3172 Acife_3173 Acife_3173 Acife_3173 3101571 3102823 + pseudogene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3173 Acife_3174 Acife_3174 Acife_3174 3102851 3103711 + ABC-type transporter%2C periplasmic subunit family 3 KEGG: bph:Bphy_5150 extracellular solute-binding protein~PFAM: Extracellular solute-binding protein%2C family 3~SMART: Extracellular solute-binding protein%2C family 3 gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3174 Acife_3175 Acife_3175 Acife_3175 3103727 3105298 + polar amino acid ABC transporter%2C inner membrane subunit TIGRFAM: Amino acid ABC transporter%2C permease protein%2C 3-TM region%2C His/Glu/Gln/Arg/opine~PFAM: ABC transporter-like%3B Binding-protein-dependent transport systems inner membrane component~KEGG: bbt:BBta_6505 ABC transporter permease/ATP-binding protein~SMART: ATPase%2C AAA+ type%2C core gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3175 Acife_3176 Acife_3176 Acife_3176 3105404 3105796 + Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: toc:Toce_1804 endoribonuclease L-PSP gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3176 Acife_3177 Acife_3177 Acife_3177 3105834 3106868 + Acetamidase/Formamidase PFAM: Acetamidase/Formamidase~KEGG: pla:Plav_0982 acetamidase/formamidase gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3177 Acife_3178 Acife_3178 Acife_3178 3106907 3107113 - hypothetical protein gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3178 Acife_3179 Acife_3179 Acife_3179 3107204 3107998 + protein of unknown function DUF81 PFAM: Protein of unknown function DUF81~KEGG: afr:AFE_0764 hypothetical protein gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3179 Acife_3180 Acife_3180 Acife_3180 3108074 3108520 + transcriptional regulator%2C AsnC family manually curated~PFAM: Transcription regulator%2C AsnC-type%2C C-terminal~KEGG: tcx:Tcr_1418 AsnC family transcriptional regulator~SMART: Transcription regulator%2C AsnC-type gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3180 Acife_3181 Acife_3181 Acife_3181 3108540 3108908 + hypothetical protein gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3181 Acife_3182 Acife_3182 Acife_3182 3109116 3113666 + hypothetical protein KEGG: tmz:Tmz1t_3166 hypothetical protein gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3182 Acife_3183 Acife_3183 Acife_3183 3113947 3115125 - beta-lactamase domain-containing protein KEGG: ppg:PputGB1_1616 beta-lactamase domain-containing protein gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3183 Acife_3184 Acife_3184 Acife_3184 3115257 3115979 - protein serine/threonine phosphatase SMART: Protein phosphatase 2C-related~KEGG: bae:BATR1942_05675 phosphorylated protein phosphatase gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3184 Acife_3185 Acife_3185 Acife_3185 3115976 3117313 - serine/threonine protein kinase KEGG: mmb:Mmol_0663 serine/threonine protein kinase~PFAM: Tyrosine-protein kinase%2C catalytic domain~SMART: Serine/threonine-protein kinase domain%3B Tyrosine-protein kinase%2C subgroup%2C catalytic domain gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3185 Acife_3186 Acife_3186 Acife_3186 3117577 3117714 + hypothetical protein gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3186 Acife_3187 Acife_3187 Acife_3187 3117731 3119575 - Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase%2C isomerising~HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]~KEGG: afr:AFE_3200 glucosamine--fructose-6-phosphate aminotransferase%2C isomerizing~PFAM: Glutamine amidotransferase%2C class-II%3B Sugar isomerase (SIS) gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3187 Acife_3188 Acife_3188 Acife_3188 3119622 3120989 - Bifunctional protein glmU TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase~HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase~KEGG: afr:AFE_3201 UDP-N-acetylglucosamine pyrophosphorylase~PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B Bacterial transferase hexapeptide repeat gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3188 Acife_3189 Acife_3189 Acife_3189 3121121 3121546 - ATP synthase epsilon chain TIGRFAM: ATPase%2C F1 complex%2C delta/epsilon subunit~HAMAP: ATPase%2C F1 complex%2C delta/epsilon subunit~KEGG: afr:AFE_3202 F0F1 ATP synthase subunit epsilon~PFAM: ATPase%2C F1 complex%2C delta/epsilon subunit%2C N-terminal%3B ATPase%2C F1 complex%2C delta/epsilon subunit%2C C-terminal gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3189 Acife_3190 Acife_3190 Acife_3190 3121550 3122959 - ATP synthase subunit beta SMART: ATPase%2C AAA+ type%2C core~TIGRFAM: ATPase%2C F1 complex%2C beta subunit~KEGG: afr:AFE_3203 ATP synthase F1%2C beta subunit~HAMAP: ATPase%2C F1 complex%2C beta subunit~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3190 Acife_3191 Acife_3191 Acife_3191 3123001 3123867 - ATP synthase gamma chain TIGRFAM: ATPase%2C F1 complex%2C gamma subunit~HAMAP: ATP synthase gamma chain~KEGG: afr:AFE_3204 F0F1 ATP synthase subunit gamma~PFAM: ATPase%2C F1 complex%2C gamma subunit gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3191 Acife_3192 Acife_3192 Acife_3192 3123877 3125421 - ATP synthase subunit alpha TIGRFAM: ATPase%2C F1 complex%2C alpha subunit~HAMAP: ATPase%2C F1 complex%2C alpha subunit~KEGG: afr:AFE_3205 F0F1 ATP synthase subunit alpha~PFAM: ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal%3B ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3192 Acife_3193 Acife_3193 Acife_3193 3125438 3125977 - ATP synthase subunit delta TIGRFAM: ATPase%2C F1 complex%2C OSCP/delta subunit~HAMAP: ATPase%2C F1 complex%2C OSCP/delta subunit~KEGG: afr:AFE_3206 ATP synthase F1%2C delta subunit~PFAM: ATPase%2C F1 complex%2C OSCP/delta subunit gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3193 Acife_3194 Acife_3194 Acife_3194 3125988 3126467 - ATP synthase subunit b TIGRFAM: ATPase%2C F0 complex%2C subunit B%2C bacterial~HAMAP: ATP synthase subunit b~KEGG: afr:AFE_3207 ATP synthase F0%2C B subunit~PFAM: ATPase%2C F0 complex%2C subunit B/B'%2C bacterial/chloroplast gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3194 Acife_3195 Acife_3195 Acife_3195 3126510 3126764 - ATP synthase subunit c TIGRFAM: ATPase%2C F0 complex%2C subunit C%2C bacterial/chloroplast~HAMAP: ATPase%2C F0 complex%2C subunit C~KEGG: afr:AFE_3208 ATP synthase F0%2C C subunit~PFAM: ATPase%2C F0/V0 complex%2C subunit C gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3195 Acife_3196 Acife_3196 Acife_3196 3126807 3127556 - ATP synthase subunit a TIGRFAM: ATPase%2C F0 complex%2C subunit A~HAMAP: ATP synthase subunit a~KEGG: afr:AFE_3209 ATP synthase F0%2C A subunit~PFAM: ATPase%2C F0 complex%2C subunit A gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3196 Acife_3197 Acife_3197 Acife_3197 3127559 3127930 - hypothetical protein KEGG: afr:AFE_3210 hypothetical protein gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3197 Acife_3198 Acife_3198 Acife_3198 3128021 3128869 - parB-like partition protein TIGRFAM: ParB-like partition protein~PFAM: ParB-like nuclease~KEGG: afr:AFE_3211 ParB family protein~SMART: ParB-like nuclease gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3198 Acife_3199 Acife_3199 Acife_3199 3128866 3129648 - Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid a%2Cc-diamide synthase~KEGG: afr:AFE_3212 chromosome partitioning protein ParA gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3199 Acife_3200 Acife_3200 Acife_3200 3129716 3130357 - Ribosomal RNA small subunit methyltransferase G TIGRFAM: rRNA small subunit methyltransferase G~HAMAP: rRNA small subunit methyltransferase G~KEGG: afr:AFE_3213 methyltransferase GidB~PFAM: rRNA small subunit methyltransferase G gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3200 Acife_3201 Acife_3201 Acife_3201 3130363 3132237 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG TIGRFAM: Glucose-inhibited division protein A~HAMAP: Glucose-inhibited division protein A~KEGG: afr:AFE_3214 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA~PFAM: Glucose-inhibited division protein A-related gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3201 Acife_3202 Acife_3202 Acife_3202 3132245 3132700 - lipoprotein%2C putative KEGG: afr:AFE_3215 lipoprotein%2C putative gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3202 Acife_3203 Acife_3203 Acife_3203 3132694 3133233 - Methyltransferase type 12 PFAM: Methyltransferase type 12~KEGG: afr:AFE_3216 hypothetical protein gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3203 Acife_3204 Acife_3204 Acife_3204 3133244 3133786 - molybdenum cofactor biosynthesis protein B KEGG: afr:AFE_3217 molybdenum cofactor biosynthesis protein B~TIGRFAM: Molybdenum cofactor biosynthesis protein B%2C proteobacteria%3B Molybdenum cofactor synthesis~PFAM: Molybdopterin binding gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3204 Acife_3205 Acife_3205 Acife_3205 3133933 3134862 + Mg2 transporter protein CorA family protein PFAM: Mg2+ transporter protein%2C CorA-like~KEGG: afr:AFE_3218 magnesium and cobalt transport protein%2C putative gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3205 Acife_3206 Acife_3206 Acife_3206 3134893 3135834 + Mg2 transporter protein CorA family protein PFAM: Mg2+ transporter protein%2C CorA-like~KEGG: afr:AFE_3219 magnesium and cobalt transport protein%2C putative gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3206 Acife_3207 Acife_3207 Acife_3207 3135844 3136743 + hypothetical protein KEGG: afr:AFE_3220 hypothetical protein gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3207 Acife_3208 Acife_3208 Acife_3208 3136754 3137668 + Mg2 transporter protein CorA family protein PFAM: Mg2+ transporter protein%2C CorA-like~KEGG: afe:Lferr_2825 Mg2 transporter protein CorA family protein gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3208 Acife_3209 Acife_3209 Acife_3209 3137831 3138400 + Isoprenylcysteine carboxyl methyltransferase PFAM: Isoprenylcysteine carboxyl methyltransferase~KEGG: afr:AFE_2216 hypothetical protein gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3209 Acife_3210 Acife_3210 Acife_3210 3138406 3139638 - protein of unknown function DUF224 cysteine-rich region domain protein PFAM: Cysteine-rich region%2C CCG%3B 4Fe-4S ferredoxin%2C iron-sulphur binding%2C subgroup~KEGG: afr:AFE_1663 glycolate oxidase%2C iron-sulfur subunit gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3210 Acife_3211 Acife_3211 Acife_3211 3139648 3140712 - FAD linked oxidase domain protein PFAM: FAD linked oxidase%2C N-terminal%3B FAD-linked oxidase%2C C-terminal~KEGG: afr:AFE_1664 glycolate oxidase FAD binding subunit gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3211 Acife_3212 Acife_3212 Acife_3212 3140714 3142213 - FAD linked oxidase domain protein PFAM: FAD-linked oxidase%2C C-terminal%3B FAD linked oxidase%2C N-terminal~KEGG: afe:Lferr_1362 D-lactate dehydrogenase (cytochrome) gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3212 Acife_3213 Acife_3213 Acife_3213 3142158 3143489 - type III effector Hrp-dependent outer protein PFAM: Protein of unknown function%2C DUF1537~KEGG: afr:AFE_1666 hypothetical protein gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3213 Acife_3214 Acife_3214 Acife_3214 3143501 3145720 - Transketolase central region PFAM: Transketolase-like%2C pyrimidine-binding domain~KEGG: afe:Lferr_1364 transketolase central region gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3214 Acife_3215 Acife_3215 Acife_3215 3145817 3146608 + transcriptional regulator%2C IclR family KEGG: afr:AFE_1668 transcriptional regulator%2C IclR family~PFAM: Transcriptional regulator IclR%2C N-terminal%3B Transcriptional regulator IclR%2C C-terminal~SMART: Transcriptional regulator IclR%2C N-terminal gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3215 Acife_3216 Acife_3216 Acife_3216 3146747 3147007 + hypothetical protein KEGG: gur:Gura_4195 hypothetical protein gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3216 Acife_3217 Acife_3217 Acife_3217 3146962 3147294 + Protein of unknown function DUF2442 PFAM: Protein of unknown function DUF2442~KEGG: afe:Lferr_0674 hypothetical protein gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3217 Acife_3218 Acife_3218 Acife_3218 3147514 3149559 - glycosyl transferase group 1 PFAM: Glycosyl transferase%2C group 1%3B Glycosyl transferase%2C family 2~KEGG: dia:Dtpsy_0558 group 1 glycosyl transferase gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3218 Acife_3219 Acife_3219 Acife_3219 3149581 3150114 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: dat:HRM2_25220 putative acetyltransferase (GNAT-family protein) gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3219 Acife_3220 Acife_3220 Acife_3220 3150062 3150331 - protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: tau:Tola_0700 hypothetical protein gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3220 Acife_3221 Acife_3221 Acife_3221 3150485 3150589 - pseudogene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3221 Acife_3222 Acife_3222 Acife_3222 3150702 3151892 - IS66 Orf2 family protein PFAM: Transposase (putative)%2C IS66 Orf2 like%3B Transposase%2C IS66~KEGG: afe:Lferr_1326 transposase IS66 gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3222 Acife_3223 Acife_3223 Acife_3223 3151968 3152321 - hypothetical protein gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3223 Acife_3224 Acife_3224 Acife_3224 3152957 3154648 + RNA-directed DNA polymerase (Reverse transcriptase) KEGG: gpb:HDN1F_35290 RNA-directed DNA polymerase (reverse transcriptase)~PFAM: RNA-directed DNA polymerase (reverse transcriptase)%3B Group II intron%2C maturase-specific%3B HNH endonuclease~SMART: HNH nuclease gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3224 Acife_3225 Acife_3225 Acife_3225 3154823 3155257 - pseudogene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3225 Acife_3226 Acife_3226 Acife_3226 3155583 3155985 - pseudogene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3226 Acife_3227 Acife_3227 Acife_3227 3156018 3157154 - glycosyl transferase family 2 KEGG: aca:ACP_0693 glycosyl transferase%2C group 2 family~manually curated~PFAM: Glycosyl transferase%2C family 2 gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3227 Acife_3228 Acife_3228 Acife_3228 3157278 3158258 - UDP-glucose 4-epimerase KEGG: afr:AFE_1342 UDP-glucose 4-epimerase~TIGRFAM: UDP-glucose 4-epimerase~PFAM: NAD-dependent epimerase/dehydratase gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3228 Acife_3229 Acife_3229 Acife_3229 3158258 3160315 - hypothetical protein KEGG: eha:Ethha_0741 hypothetical protein gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3229 Acife_3230 Acife_3230 Acife_3230 3160349 3161293 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase~KEGG: bph:Bphy_2297 NAD-dependent epimerase/dehydratase gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3230 Acife_3231 Acife_3231 Acife_3231 3161290 3164022 - Rhamnan synthesis F PFAM: Rhamnan synthesis F%3B Glycosyl transferase%2C group 1~KEGG: nmu:Nmul_A2403 glycosyl transferase%2C group 1 gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3231 Acife_3232 Acife_3232 Acife_3232 3164015 3165046 - hypothetical protein KEGG: met:M446_6083 hypothetical protein gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3232 Acife_3233 Acife_3233 Acife_3233 3165246 3165950 - hypothetical protein KEGG: cre:CHLREDRAFT_196838 O-methyltransferase gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3233 Acife_3234 Acife_3234 Acife_3234 3166322 3166440 - pseudogene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3234 Acife_3235 Acife_3235 Acife_3235 3166457 3166855 - GtrA family protein PFAM: GtrA-like protein~KEGG: brh:RBRH_03111 hypothetical protein gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3235 Acife_3236 Acife_3236 Acife_3236 3166834 3167853 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2~KEGG: bgf:BC1003_0767 glycosyl transferase family 2 gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3236 Acife_3237 Acife_3237 Acife_3237 3167850 3170588 - Protein of unknown function%2C membrane YfhO PFAM: Protein of unknown function%2C membrane YfhO~KEGG: bgf:BC1003_0768 hypothetical protein gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3237 Acife_3238 Acife_3238 Acife_3238 3170585 3173926 - glycosyl transferase family 2 PFAM: Glycosyl transferase%2C family 2%3B Methyltransferase type 12~KEGG: bph:Bphy_2296 glycosyl transferase family protein gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3238 Acife_3239 Acife_3239 Acife_3239 3174131 3174880 - ABC transporter related protein KEGG: pst:PSPTO_0705 O-antigen ABC transporter ATP-binding protein~PFAM: ABC transporter-like~SMART: ATPase%2C AAA+ type%2C core gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3239 Acife_3240 Acife_3240 Acife_3240 3174880 3175689 - ABC-2 type transporter PFAM: ABC-2 type transporter~KEGG: pst:PSPTO_0704 O-antigen ABC transporter permease gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3240 Acife_3241 Acife_3241 Acife_3241 3175860 3176156 + prevent-host-death family protein TIGRFAM: Prevent-host-death protein gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3241 Acife_3242 Acife_3242 Acife_3242 3176192 3176437 + hypothetical protein gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3242 Acife_3243 Acife_3243 Acife_3243 3176434 3176871 + hypothetical protein gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3243 Acife_3244 Acife_3244 Acife_3244 3177165 3177449 - protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: bpa:BPP0379 hypothetical protein gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3244 Acife_3245 Acife_3245 Acife_3245 3177421 3177660 - hypothetical protein gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3245 Acife_3246 Acife_3246 Acife_3246 3177803 3178129 - transcriptional modulator of MazE/toxin%2C MazF PFAM: PemK-like protein~KEGG: xfa:XFa0027 plasmid maintenance protein gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3246 Acife_3247 Acife_3247 Acife_3247 3178116 3178346 - hypothetical protein KEGG: xfa:XFa0028 hypothetical protein gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3247 Acife_3248 Acife_3248 Acife_3248 3178542 3179063 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: eba:ebA5964 GCN5-related N-acetyltransferase gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3248 Acife_3249 Acife_3249 Acife_3249 3179060 3179353 - protein of unknown function DUF1778 PFAM: Protein of unknown function DUF1778~KEGG: pna:Pnap_1572 hypothetical protein gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3249 Acife_3250 Acife_3250 Acife_3250 3179411 3180553 - dTDP-glucose 4%2C6-dehydratase KEGG: afr:AFE_0441 dTDP-glucose 4%2C6-dehydratase~TIGRFAM: dTDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3250 Acife_3251 Acife_3251 Acife_3251 3180573 3181469 - dTDP-4-dehydrorhamnose reductase KEGG: afr:AFE_0442 dTDP-4-dehydrorhamnose reductase~TIGRFAM: dTDP-4-dehydrorhamnose reductase~PFAM: dTDP-4-dehydrorhamnose reductase gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3251 Acife_3252 Acife_3252 Acife_3252 3181466 3182014 - dTDP-4-dehydrorhamnose 3%2C5-epimerase KEGG: afr:AFE_3294 dTDP-4-dehydrorhamnose 3%2C5-epimerase~TIGRFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase related~PFAM: dTDP-4-dehydrorhamnose 3%2C5-epimerase related gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3252 Acife_3253 Acife_3253 Acife_3253 3182011 3182895 - glucose-1-phosphate thymidylyltransferase KEGG: afr:AFE_3295 glucose-1-phosphate thymidylyltransferase~TIGRFAM: Glucose-1-phosphate thymidylyltransferase%2C long form~PFAM: Nucleotidyl transferase gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3253 Acife_3254 Acife_3254 Acife_3254 3183105 3184481 + General substrate transporter PFAM: General substrate transporter~KEGG: afr:AFE_3296 major facilitator family transporter gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3254 Acife_3255 Acife_3255 Acife_3255 3184495 3185196 - TonB family protein KEGG: afr:AFE_3297 TonB family protein gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3255 Acife_3256 Acife_3256 Acife_3256 3185193 3186185 - delta-aminolevulinic acid dehydratase PFAM: Tetrapyrrole biosynthesis%2C porphobilinogen synthase~KEGG: afr:AFE_3298 delta-aminolevulinic acid dehydratase gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3256 Acife_3257 Acife_3257 Acife_3257 3186182 3186970 - Uroporphyrinogen III synthase HEM4 PFAM: Tetrapyrrole biosynthesis%2C uroporphyrinogen III synthase~KEGG: afr:AFE_3299 uroporphyrinogen-III synthase gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3257 Acife_3258 Acife_3258 Acife_3258 3186967 3187887 - Porphobilinogen deaminase TIGRFAM: Tetrapyrrole biosynthesis%2C hydroxymethylbilane synthase~HAMAP: Porphobilinogen deaminase~KEGG: afr:AFE_3300 porphobilinogen deaminase~PFAM: Tetrapyrrole biosynthesis%2C hydroxymethylbilane synthase gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3258 Acife_3259 Acife_3259 Acife_3259 3187935 3188264 - putative comEA-like protein KEGG: afe:Lferr_2899 putative comEA-like protein gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3259 Acife_3260 Acife_3260 Acife_3260 3188293 3188688 - histidine triad (HIT) protein PFAM: Histidine triad (HIT) protein~KEGG: afr:AFE_3302 HIT family protein gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3260 Acife_3261 Acife_3261 Acife_3261 3188685 3189977 - Glutamate-1-semialdehyde 2%2C1-aminomutase TIGRFAM: Tetrapyrrole biosynthesis%2C glutamate-1-semialdehyde aminotransferase~HAMAP: Glutamate-1-semialdehyde 2%2C1-aminomutase~KEGG: afr:AFE_3303 glutamate-1-semialdehyde aminotransferase~PFAM: Aminotransferase class-III gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3261 Acife_3262 Acife_3262 Acife_3262 3189980 3190633 - Thiamine-phosphate pyrophosphorylase TIGRFAM: Thiamine monophosphate synthase~HAMAP: Thiamine-phosphate pyrophosphorylase~KEGG: afr:AFE_3304 thiamine-phosphate pyrophosphorylase~PFAM: Thiamine monophosphate synthase gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3262 Acife_3263 Acife_3263 Acife_3263 3190633 3191475 - Phosphomethylpyrimidine kinase type-1 PFAM: Phosphomethylpyrimidine kinase type-1~KEGG: afr:AFE_3305 phosphomethylpyrimidine kinase%2C putative gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3263 Acife_3264 Acife_3264 Acife_3264 3191485 3191940 - hypothetical protein KEGG: afr:AFE_2733 hypothetical protein gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3264 Acife_3265 Acife_3265 Acife_3265 3192316 3192804 - hypothetical protein KEGG: afe:Lferr_2754 cytochrome c-like protein gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3265 Acife_3266 Acife_3266 Acife_3266 3193031 3193345 - iron oxidase KEGG: afr:AFE_2732 iron oxidase gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3266 Acife_3267 Acife_3267 Acife_3267 3193403 3194101 - cytochrome c1 PFAM: Cytochrome c1~KEGG: afr:AFE_2731 ubiquinol--cytochrome c reductase%2C cytochrome c1 subunit gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3267 Acife_3268 Acife_3268 Acife_3268 3194124 3195338 - Cytochrome b/b6 domain-containing protein PFAM: Cytochrome b/b6%2C N-terminal%3B Cytochrome b/b6%2C C-terminal~KEGG: afr:AFE_2730 ubiquinol--cytochrome c reductase%2C cytochrome b subunit gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3268 Acife_3269 Acife_3269 Acife_3269 3195366 3195986 - ubiquinol-cytochrome c reductase%2C iron-sulfur subunit KEGG: afr:AFE_2729 ubiquinol--cytochrome c reductase%2C iron-sulfur subunit~TIGRFAM: Ubiquinol-cytochrome c reductase%2C iron-sulphur subunit%3B Twin-arginine translocation pathway%2C signal sequence~PFAM: Rieske [2Fe-2S] iron-sulphur domain gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3269 Acife_3270 Acife_3270 Acife_3270 3196017 3196826 - short-chain dehydrogenase/reductase SDR PFAM: Short-chain dehydrogenase/reductase SDR~KEGG: afr:AFE_2728 oxidoreductase%2C short-chain dehydrogenase/reductase family gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3270 Acife_3271 Acife_3271 Acife_3271 3196832 3197575 - cytochrome c class I PFAM: Cytochrome c%2C class I~KEGG: afe:Lferr_2349 cytochrome c class I gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3271 Acife_3272 Acife_3272 Acife_3272 3197822 3197953 - pseudogene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3272 Acife_3273 Acife_3273 Acife_3273 3198195 3199376 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase%2C NPD~KEGG: afe:Lferr_2347 2-nitropropane dioxygenase NPD gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3273 Acife_3274 Acife_3274 Acife_3274 3199481 3199990 + Sterol-binding domain protein PFAM: Sterol-binding~KEGG: afr:AFE_2724 hypothetical protein gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3274 Acife_3275 Acife_3275 Acife_3275 3200058 3201071 + peptidase U32 PFAM: Peptidase U32~KEGG: afr:AFE_2723 peptidase%2C U32 family gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3275 Acife_3276 Acife_3276 Acife_3276 3201235 3202105 + pseudogene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3276 Acife_3277 Acife_3277 Acife_3277 3202124 3203653 + protein of unknown function DUF116 PFAM: Protein of unknown function DUF116%3B Biotin/lipoate A/B protein ligase~KEGG: afr:AFE_2721 lipoate-protein ligase A%2C putative gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3277 Acife_3278 Acife_3278 Acife_3278 3203674 3204399 - anaerobic ribonucleoside-triphosphate reductase activating protein manually curated~TIGRFAM: Ribonucleoside-triphosphate reductase%2C anaerobic-like~KEGG: afr:AFE_2720 anaerobic ribonucleoside-triphosphate reductase%2C beta subunit~PFAM: Radical SAM gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3278 Acife_3279 Acife_3279 Acife_3279 3204412 3204618 - hypothetical protein KEGG: afr:AFE_2719 hypothetical protein gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3279 Acife_3280 Acife_3280 Acife_3280 3204638 3206665 - anaerobic ribonucleoside-triphosphate reductase KEGG: afr:AFE_2718 anaerobic ribonucleoside triphosphate reductase~TIGRFAM: Ribonucleoside-triphosphate reductase%2C anaerobic~PFAM: ATP-cone gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_3280 Acife_R0001 Acife_R0001 Acife_R0001 83123 83198 - tRNA-Lys tRNA-Lys2 tRNA gene71 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0001 Acife_R0002 Acife_R0002 Acife_R0002 94973 95048 + tRNA-Phe tRNA-Phe1 tRNA gene82 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0002 Acife_R0003 Acife_R0003 Acife_R0003 183556 183632 - tRNA-Met tRNA-Met3 tRNA gene168 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0003 Acife_R0004 Acife_R0004 Acife_R0004 277354 277430 + tRNA-Pro tRNA-Pro1 tRNA gene262 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0004 Acife_R0005 Acife_R0005 Acife_R0005 554392 554467 - tRNA-His tRNA-His1 tRNA gene547 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0005 Acife_R0006 Acife_R0006 Acife_R0006 555525 555599 - tRNA-Gln tRNA-Gln2 tRNA gene549 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0006 Acife_R0007 Acife_R0007 Acife_R0007 575052 575125 - tRNA-Gln tRNA-Gln1 tRNA gene572 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0007 Acife_R0008 Acife_R0008 Acife_R0008 580685 580761 + tRNA-Arg tRNA-Arg1 tRNA gene579 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0008 Acife_R0009 Acife_R0009 Acife_R0009 998396 998471 - tRNA-Arg tRNA-Arg4 tRNA gene981 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0009 Acife_R0010 Acife_R0010 Acife_R0010 1073398 1073474 - tRNA-Pro tRNA-Pro3 tRNA gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0010 Acife_R0011 Acife_R0011 Acife_R0011 1082590 1082676 + tRNA-Leu tRNA-Leu1 tRNA gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0011 Acife_R0012 Acife_R0012 Acife_R0012 1145688 1145780 + tRNA-Ser tRNA-Ser1 tRNA gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0012 Acife_R0013 Acife_R0013 Acife_R0013 1205280 1205365 - tRNA-Leu tRNA-Leu5 tRNA gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0013 Acife_R0014 Acife_R0014 Acife_R0014 1254861 1255041 + 6s_RNA 6S / SsrS RNA as predicted by Rfam (RF00013)%2C score 69.54 ncRNA gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0014 Acife_R0015 Acife_R0015 Acife_R0015 1264671 1264746 - tRNA-Glu tRNA-Glu2 tRNA gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0015 Acife_R0016 Acife_R0016 Acife_R0016 1359581 1359657 - tRNA-Arg tRNA-Arg3 tRNA gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0016 Acife_R0017 Acife_R0017 Acife_R0017 1370892 1370966 + tRNA-Gly tRNA-Gly1 tRNA gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0017 Acife_R0018 Acife_R0018 Acife_R0018 1371007 1371080 + tRNA-Cys tRNA-Cys1 tRNA gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0018 Acife_R0019 Acife_R0019 Acife_R0019 1383185 1383261 + tRNA-Arg tRNA-Arg2 tRNA gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0019 Acife_R0020 Acife_R0020 Acife_R0020 1384779 1384853 + tRNA-Val tRNA-Val1 tRNA gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0020 Acife_R0021 Acife_R0021 Acife_R0021 1390543 1390618 - tRNA-Thr tRNA-Thr3 tRNA gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0021 Acife_R0022 Acife_R0022 Acife_R0022 1414051 1414126 + tRNA-Val tRNA-Val2 tRNA gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0022 Acife_R0023 Acife_R0023 Acife_R0023 1414138 1414214 + tRNA-Asp tRNA-Asp1 tRNA gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0023 Acife_R0024 Acife_R0024 Acife_R0024 1444237 1444323 - tRNA-Leu tRNA-Leu4 tRNA gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0024 Acife_R0025 Acife_R0025 Acife_R0025 1464512 1464602 + tRNA-Ser tRNA-Ser2 tRNA gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0025 Acife_R0026 Acife_R0026 ffs ffs 1506943 1507062 + SRP RNA%3B RNA component of signal recognition particle gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0026 Acife_R0027 Acife_R0027 Acife_R0027 1602031 1602115 - tRNA-Leu tRNA-Leu3 tRNA gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0027 Acife_R0028 Acife_R0028 Acife_R0028 1726463 1726538 - tRNA-Lys tRNA-Lys1 tRNA gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0028 Acife_R0029 Acife_R0029 ssrA ssrA 1739593 1739955 - tmRNA as predicted by Rfam (RF00023)%2C score 235.13 tmRNA gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0029 Acife_R0030 Acife_R0030 Acife_R0030 1758486 1758561 - tRNA-Ala tRNA-Ala4 tRNA gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0030 Acife_R0031 Acife_R0031 Acife_R0031 1974941 1975016 - tRNA-Asn tRNA-Asn1 tRNA gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0031 Acife_R0032 Acife_R0032 Acife_R0032 2165756 2165846 - tRNA-Ser tRNA-Ser4 tRNA gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0032 Acife_R0033 Acife_R0033 Acife_R0033 2234785 2234860 - tRNA-Thr tRNA-Thr2 tRNA gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0033 Acife_R0034 Acife_R0034 Acife_R0034 2276815 2276884 - tRNA-Ser tRNA-Ser3 tRNA gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0034 Acife_R0035 Acife_R0035 Acife_R0035 2380208 2380284 - tRNA-Met tRNA-Met2 tRNA gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0035 Acife_R0036 Acife_R0036 Acife_R0036 2397808 2397883 + tRNA-Ala tRNA-Ala1 tRNA gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0036 Acife_R0037 Acife_R0037 Acife_R0037 2412349 2412424 - tRNA-Glu tRNA-Glu1 tRNA gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0037 Acife_R0038 Acife_R0038 Acife_R0038 2422433 2422506 + tRNA-Gly tRNA-Gly2 tRNA gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0038 Acife_R0039 Acife_R0039 Acife_R0039 2518569 2518645 - tRNA-Pro tRNA-Pro2 tRNA gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0039 Acife_R0040 Acife_R0040 Acife_R0040 2525978 2526052 - tRNA-Val tRNA-Val3 tRNA gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0040 Acife_R0041 Acife_R0041 Acife_R0041 2540715 2540799 - tRNA-Leu tRNA-Leu2 tRNA gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0041 Acife_R0042 Acife_R0042 Acife_R0042 2638281 2638396 - 5S ribosomal RNA 5S ribosomal RNA as predicted by Rfam (RF00001)%2C score 82.34 rRNA gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0042 Acife_R0043 Acife_R0043 Acife_R0043 2638494 2641381 - 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0043 Acife_R0044 Acife_R0044 Acife_R0044 2641626 2641701 - tRNA-Ala tRNA-Ala3 tRNA gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0044 Acife_R0045 Acife_R0045 Acife_R0045 2641705 2641781 - tRNA-Ile tRNA-Ile2 tRNA gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0045 Acife_R0046 Acife_R0046 Acife_R0046 2641832 2643355 - 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0046 Acife_R0047 Acife_R0047 Acife_R0047 2643489 2643565 - tRNA-Met tRNA-Met1 tRNA gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0047 Acife_R0048 Acife_R0048 Acife_R0048 2701137 2701212 - tRNA-Trp tRNA-Trp1 tRNA gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0048 Acife_R0049 Acife_R0049 Acife_R0049 2702504 2702579 - tRNA-Thr tRNA-Thr1 tRNA gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0049 Acife_R0050 Acife_R0050 Acife_R0050 2702588 2702661 - tRNA-Gly tRNA-Gly3 tRNA gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0050 Acife_R0051 Acife_R0051 Acife_R0051 2702721 2702805 - tRNA-Tyr tRNA-Tyr1 tRNA gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0051 Acife_R0052 Acife_R0052 rnpB rnpB 2778808 2779152 + RNA component of RNaseP Bacterial RNase P class A as predicted by Rfam (RF00010)%2C score 325.22 gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0052 Acife_R0053 Acife_R0053 Acife_R0053 3020428 3020543 - 5S ribosomal RNA 5S ribosomal RNA as predicted by Rfam (RF00001)%2C score 82.34 rRNA gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0053 Acife_R0054 Acife_R0054 Acife_R0054 3020641 3023528 - 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0054 Acife_R0055 Acife_R0055 Acife_R0055 3023773 3023848 - tRNA-Ala tRNA-Ala2 tRNA gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0055 Acife_R0056 Acife_R0056 Acife_R0056 3023852 3023928 - tRNA-Ile tRNA-Ile1 tRNA gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0056 Acife_R0057 Acife_R0057 Acife_R0057 3023979 3025502 - 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr 22%2C 2007 rRNA gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=Acife_R0057