locus-tag class description AFE_0001 PF02767 DNA polymerase III beta subunit, central domain AFE_0001 PF02768 DNA polymerase III beta subunit, C-terminal domain AFE_0001 PF00712 DNA polymerase III beta subunit, N-terminal domain AFE_0002 PF02463 RecF/RecN/SMC N terminal domain AFE_0003 PF18053 DNA gyrase B subunit insert domain AFE_0003 PF01751 Toprim domain AFE_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_0003 PF00204 DNA gyrase B AFE_0003 PF00986 DNA gyrase B subunit, carboxyl terminus AFE_0004 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_0011 PF03776 Septum formation topological specificity factor MinE AFE_0012 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFE_0013 PF03775 Septum formation inhibitor MinC, C-terminal domain AFE_0013 PF05209 Septum formation inhibitor MinC, N-terminal domain AFE_0014 PF00037 4Fe-4S binding domain AFE_0014 PF11953 Domain of unknown function (DUF3470) AFE_0015 PF13368 Topoisomerase C-terminal repeat AFE_0015 PF01751 Toprim domain AFE_0015 PF01131 DNA topoisomerase AFE_0016 PF04361 Protein of unknown function (DUF494) AFE_0017 PF17782 DprA winged helix domain AFE_0017 PF02481 DNA recombination-mediator protein A AFE_0019 PF01327 Polypeptide deformylase AFE_0020 PF00551 Formyl transferase AFE_0020 PF02911 Formyl transferase, C-terminal domain AFE_0021 PF01029 NusB family AFE_0021 PF01189 16S rRNA methyltransferase RsmB/F AFE_0023 PF00512 His Kinase A (phospho-acceptor) domain AFE_0023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_0023 PF00672 HAMP domain AFE_0023 PF00989 PAS fold AFE_0024 PF00072 Response regulator receiver domain AFE_0024 PF00158 Sigma-54 interaction domain AFE_0024 PF02954 Bacterial regulatory protein, Fis family AFE_0026 PF00989 PAS fold AFE_0026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_0026 PF00512 His Kinase A (phospho-acceptor) domain AFE_0027 PF02954 Bacterial regulatory protein, Fis family AFE_0027 PF00072 Response regulator receiver domain AFE_0027 PF00158 Sigma-54 interaction domain AFE_0029 PF13570 PQQ-like domain AFE_0029 PF01011 PQQ enzyme repeat AFE_0029 PF13360 PQQ-like domain AFE_0031 PF10396 GTP-binding protein TrmE N-terminus AFE_0031 PF01926 50S ribosome-binding GTPase AFE_0031 PF12631 MnmE helical domain AFE_0032 PF14849 YidC periplasmic domain AFE_0032 PF02096 60Kd inner membrane protein AFE_0033 PF01809 Putative membrane protein insertion efficiency factor AFE_0034 PF00825 Ribonuclease P AFE_0035 PF00468 Ribosomal protein L34 AFE_0036 PF00005 ABC transporter AFE_0036 PF12848 ABC transporter AFE_0037 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_0037 PF03466 LysR substrate binding domain AFE_0038 PF00529 HlyD membrane-fusion protein of T1SS AFE_0038 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_0040 PF07690 Major Facilitator Superfamily AFE_0054 PF01914 MarC family integral membrane protein AFE_0056 PF02938 GAD domain AFE_0056 PF01336 OB-fold nucleic acid binding domain AFE_0056 PF00152 tRNA synthetases class II (D, K and N) AFE_0057 PF02445 Quinolinate synthetase A protein AFE_0059 PF01709 Transcriptional regulator AFE_0060 PF02075 Crossover junction endodeoxyribonuclease RuvC AFE_0061 PF01330 RuvA N terminal domain AFE_0061 PF07499 RuvA, C-terminal domain AFE_0062 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFE_0062 PF05491 RuvB C-terminal winged helix domain AFE_0062 PF17864 RuvB AAA lid domain AFE_0063 PF03061 Thioesterase superfamily AFE_0064 PF01618 MotA/TolQ/ExbB proton channel family AFE_0065 PF02472 Biopolymer transport protein ExbD/TolR AFE_0067 PF07676 WD40-like Beta Propeller Repeat AFE_0067 PF04052 TolB amino-terminal domain AFE_0068 PF06508 Queuosine biosynthesis protein QueC AFE_0069 PF04055 Radical SAM superfamily AFE_0071 PF00691 OmpA family AFE_0073 PF02397 Bacterial sugar transferase AFE_0076 PF01943 Polysaccharide biosynthesis protein AFE_0076 PF14667 Polysaccharide biosynthesis C-terminal domain AFE_0077 PF01209 ubiE/COQ5 methyltransferase family AFE_0079 PF00534 Glycosyl transferases group 1 AFE_0081 PF13439 Glycosyltransferase Family 4 AFE_0081 PF00534 Glycosyl transferases group 1 AFE_0082 PF00535 Glycosyl transferase family 2 AFE_0092 PF13784 Fic/DOC family N-terminal AFE_0092 PF02661 Fic/DOC family AFE_0098 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_0101 PF00005 ABC transporter AFE_0105 PF01566 Natural resistance-associated macrophage protein AFE_0106 PF00512 His Kinase A (phospho-acceptor) domain AFE_0106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_0106 PF00672 HAMP domain AFE_0107 PF00486 Transcriptional regulatory protein, C terminal AFE_0107 PF00072 Response regulator receiver domain AFE_0109 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_0114 PF07859 alpha/beta hydrolase fold AFE_0122 PF04305 Protein of unknown function (DUF455) AFE_0123 PF00814 Glycoprotease family AFE_0125 PF02660 Glycerol-3-phosphate acyltransferase AFE_0126 PF02152 Dihydroneopterin aldolase AFE_0127 PF04055 Radical SAM superfamily AFE_0127 PF18693 TRAM domain AFE_0127 PF00919 Uncharacterized protein family UPF0004 AFE_0134 PF04055 Radical SAM superfamily AFE_0134 PF06969 HemN C-terminal domain AFE_0135 PF03466 LysR substrate binding domain AFE_0135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_0138 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFE_0140 PF01565 FAD binding domain AFE_0140 PF02913 FAD linked oxidases, C-terminal domain AFE_0141 PF13580 SIS domain AFE_0142 PF02021 Uncharacterised protein family UPF0102 AFE_0143 PF04348 LppC putative lipoprotein AFE_0144 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFE_0152 PF04241 Protein of unknown function (DUF423) AFE_0154 PF00230 Major intrinsic protein AFE_0156 PF17284 Spermidine synthase tetramerisation domain AFE_0157 PF02675 S-adenosylmethionine decarboxylase AFE_0158 PF00005 ABC transporter AFE_0159 PF02405 Permease MlaE AFE_0160 PF02470 MlaD protein AFE_0163 PF00005 ABC transporter AFE_0164 PF01479 S4 domain AFE_0165 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AFE_0167 PF00398 Ribosomal RNA adenine dimethylase AFE_0170 PF03485 Arginyl tRNA synthetase N terminal domain AFE_0170 PF05746 DALR anticodon binding domain AFE_0170 PF00750 tRNA synthetases class I (R) AFE_0171 PF07690 Major Facilitator Superfamily AFE_0172 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_0172 PF03466 LysR substrate binding domain AFE_0173 PF05175 Methyltransferase small domain AFE_0174 PF03372 Endonuclease/Exonuclease/phosphatase family AFE_0176 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AFE_0177 PF00043 Glutathione S-transferase, C-terminal domain AFE_0177 PF13417 Glutathione S-transferase, N-terminal domain AFE_0178 PF03372 Endonuclease/Exonuclease/phosphatase family AFE_0179 PF00762 Ferrochelatase AFE_0180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFE_0181 PF03702 Anhydro-N-acetylmuramic acid kinase AFE_0182 PF01488 Shikimate / quinate 5-dehydrogenase AFE_0182 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFE_0182 PF08501 Shikimate dehydrogenase substrate binding domain AFE_0183 PF00437 Type II/IV secretion system protein AFE_0183 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFE_0184 PF00512 His Kinase A (phospho-acceptor) domain AFE_0184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_0185 PF02954 Bacterial regulatory protein, Fis family AFE_0185 PF00072 Response regulator receiver domain AFE_0185 PF00158 Sigma-54 interaction domain AFE_0186 PF01478 Type IV leader peptidase family AFE_0186 PF06750 Bacterial Peptidase A24 N-terminal domain AFE_0187 PF01121 Dephospho-CoA kinase AFE_0188 PF07072 Cell division protein AFE_0189 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AFE_0191 PF02954 Bacterial regulatory protein, Fis family AFE_0192 PF10145 Phage-related minor tail protein AFE_0192 PF01551 Peptidase family M23 AFE_0192 PF01464 Transglycosylase SLT domain AFE_0195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFE_0195 PF00289 Biotin carboxylase, N-terminal domain AFE_0195 PF02785 Biotin carboxylase C-terminal domain AFE_0196 PF00364 Biotin-requiring enzyme AFE_0197 PF01220 Dehydroquinase class II AFE_0200 PF12327 FtsZ family, C-terminal domain AFE_0200 PF00091 Tubulin/FtsZ family, GTPase domain AFE_0201 PF02491 SHS2 domain inserted in FTSA AFE_0202 PF03799 Cell division protein FtsQ AFE_0202 PF08478 POTRA domain, FtsQ-type AFE_0203 PF01820 D-ala D-ala ligase N-terminus AFE_0203 PF07478 D-ala D-ala ligase C-terminus AFE_0204 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFE_0204 PF01565 FAD binding domain AFE_0205 PF02875 Mur ligase family, glutamate ligase domain AFE_0205 PF08245 Mur ligase middle domain AFE_0205 PF01225 Mur ligase family, catalytic domain AFE_0206 PF03033 Glycosyltransferase family 28 N-terminal domain AFE_0206 PF04101 Glycosyltransferase family 28 C-terminal domain AFE_0207 PF01098 Cell cycle protein AFE_0208 PF02875 Mur ligase family, glutamate ligase domain AFE_0208 PF08245 Mur ligase middle domain AFE_0209 PF00953 Glycosyl transferase family 4 AFE_0209 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFE_0210 PF01225 Mur ligase family, catalytic domain AFE_0210 PF08245 Mur ligase middle domain AFE_0210 PF02875 Mur ligase family, glutamate ligase domain AFE_0211 PF01225 Mur ligase family, catalytic domain AFE_0211 PF02875 Mur ligase family, glutamate ligase domain AFE_0211 PF08245 Mur ligase middle domain AFE_0212 PF00905 Penicillin binding protein transpeptidase domain AFE_0212 PF03717 Penicillin-binding Protein dimerisation domain AFE_0214 PF01795 MraW methylase family AFE_0215 PF02381 MraZ protein, putative antitoxin-like AFE_0218 PF12627 Probable RNA and SrmB- binding site of polymerase A AFE_0218 PF01966 HD domain AFE_0218 PF01743 Poly A polymerase head domain AFE_0220 PF00501 AMP-binding enzyme AFE_0221 PF02798 Glutathione S-transferase, N-terminal domain AFE_0221 PF00043 Glutathione S-transferase, C-terminal domain AFE_0223 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AFE_0225 PF01043 SecA preprotein cross-linking domain AFE_0225 PF07517 SecA DEAD-like domain AFE_0225 PF02810 SEC-C motif AFE_0225 PF07516 SecA Wing and Scaffold domain AFE_0226 PF01960 ArgJ family AFE_0227 PF00293 NUDIX domain AFE_0228 PF00535 Glycosyl transferase family 2 AFE_0230 PF00534 Glycosyl transferases group 1 AFE_0230 PF13439 Glycosyltransferase Family 4 AFE_0231 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AFE_0234 PF00535 Glycosyl transferase family 2 AFE_0235 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFE_0237 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AFE_0238 PF03279 Bacterial lipid A biosynthesis acyltransferase AFE_0239 PF00155 Aminotransferase class I and II AFE_0240 PF12867 DinB superfamily AFE_0240 PF03781 Sulfatase-modifying factor enzyme 1 AFE_0241 PF00588 SpoU rRNA Methylase family AFE_0242 PF00156 Phosphoribosyl transferase domain AFE_0243 PF00155 Aminotransferase class I and II AFE_0244 PF00561 alpha/beta hydrolase fold AFE_0245 PF08241 Methyltransferase domain AFE_0247 PF01435 Peptidase family M48 AFE_0248 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AFE_0249 PF04376 Arginine-tRNA-protein transferase, N terminus AFE_0249 PF04377 Arginine-tRNA-protein transferase, C terminus AFE_0250 PF03649 Uncharacterised protein family (UPF0014) AFE_0251 PF00929 Exonuclease AFE_0252 PF00175 Oxidoreductase NAD-binding domain AFE_0252 PF00970 Oxidoreductase FAD-binding domain AFE_0252 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_0255 PF00440 Bacterial regulatory proteins, tetR family AFE_0256 PF00696 Amino acid kinase family AFE_0257 PF00529 HlyD membrane-fusion protein of T1SS AFE_0257 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_0259 PF04055 Radical SAM superfamily AFE_0259 PF06968 Biotin and Thiamin Synthesis associated domain AFE_0260 PF02594 Uncharacterised ACR, YggU family COG1872 AFE_0261 PF02325 YGGT family AFE_0262 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFE_0262 PF03807 NADP oxidoreductase coenzyme F420-dependent AFE_0263 PF01168 Alanine racemase, N-terminal domain AFE_0264 PF00437 Type II/IV secretion system protein AFE_0265 PF00437 Type II/IV secretion system protein AFE_0266 PF00535 Glycosyl transferase family 2 AFE_0269 PF00753 Metallo-beta-lactamase superfamily AFE_0270 PF13545 Crp-like helix-turn-helix domain AFE_0270 PF00027 Cyclic nucleotide-binding domain AFE_0271 PF02390 Putative methyltransferase AFE_0272 PF00731 AIR carboxylase AFE_0273 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFE_0273 PF02222 ATP-grasp domain AFE_0276 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AFE_0277 PF01668 SmpB protein AFE_0278 PF13396 Phospholipase_D-nuclease N-terminal AFE_0278 PF13091 PLD-like domain AFE_0279 PF04355 SmpA / OmlA family AFE_0280 PF03364 Polyketide cyclase / dehydrase and lipid transport AFE_0281 PF01472 PUA domain AFE_0281 PF00696 Amino acid kinase family AFE_0282 PF01475 Ferric uptake regulator family AFE_0283 PF01926 50S ribosome-binding GTPase AFE_0283 PF01018 GTP1/OBG AFE_0284 PF01016 Ribosomal L27 protein AFE_0285 PF00829 Ribosomal prokaryotic L21 protein AFE_0286 PF00916 Sulfate permease family AFE_0286 PF01740 STAS domain AFE_0287 PF00484 Carbonic anhydrase AFE_0288 PF01717 Cobalamin-independent synthase, Catalytic domain AFE_0288 PF08267 Cobalamin-independent synthase, N-terminal domain AFE_0289 PF01209 ubiE/COQ5 methyltransferase family AFE_0292 PF00561 alpha/beta hydrolase fold AFE_0292 PF07021 Methionine biosynthesis protein MetW AFE_0293 PF00561 alpha/beta hydrolase fold AFE_0295 PF00464 Serine hydroxymethyltransferase AFE_0296 PF03477 ATP cone domain AFE_0297 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFE_0297 PF01872 RibD C-terminal domain AFE_0298 PF00677 Lumazine binding domain AFE_0299 PF00925 GTP cyclohydrolase II AFE_0299 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFE_0300 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFE_0301 PF01029 NusB family AFE_0305 PF03109 ABC1 family AFE_0306 PF00691 OmpA family AFE_0306 PF04972 BON domain AFE_0311 PF03143 Elongation factor Tu C-terminal domain AFE_0311 PF03144 Elongation factor Tu domain 2 AFE_0311 PF00009 Elongation factor Tu GTP binding domain AFE_0314 PF00467 KOW motif AFE_0314 PF02357 Transcription termination factor nusG AFE_0315 PF03946 Ribosomal protein L11, N-terminal domain AFE_0315 PF00298 Ribosomal protein L11, RNA binding domain AFE_0316 PF00687 Ribosomal protein L1p/L10e family AFE_0317 PF00466 Ribosomal protein L10 AFE_0318 PF00542 Ribosomal protein L7/L12 C-terminal domain AFE_0318 PF16320 Ribosomal protein L7/L12 dimerisation domain AFE_0320 PF04560 RNA polymerase Rpb2, domain 7 AFE_0320 PF04561 RNA polymerase Rpb2, domain 2 AFE_0320 PF00562 RNA polymerase Rpb2, domain 6 AFE_0320 PF10385 RNA polymerase beta subunit external 1 domain AFE_0320 PF04565 RNA polymerase Rpb2, domain 3 AFE_0320 PF04563 RNA polymerase beta subunit AFE_0321 PF04998 RNA polymerase Rpb1, domain 5 AFE_0321 PF05000 RNA polymerase Rpb1, domain 4 AFE_0321 PF04983 RNA polymerase Rpb1, domain 3 AFE_0321 PF00623 RNA polymerase Rpb1, domain 2 AFE_0321 PF04997 RNA polymerase Rpb1, domain 1 AFE_0322 PF00164 Ribosomal protein S12/S23 AFE_0323 PF00177 Ribosomal protein S7p/S5e AFE_0324 PF03764 Elongation factor G, domain IV AFE_0324 PF03144 Elongation factor Tu domain 2 AFE_0324 PF14492 Elongation Factor G, domain II AFE_0324 PF00009 Elongation factor Tu GTP binding domain AFE_0324 PF00679 Elongation factor G C-terminus AFE_0325 PF03143 Elongation factor Tu C-terminal domain AFE_0325 PF00009 Elongation factor Tu GTP binding domain AFE_0325 PF03144 Elongation factor Tu domain 2 AFE_0326 PF00338 Ribosomal protein S10p/S20e AFE_0327 PF00297 Ribosomal protein L3 AFE_0328 PF00573 Ribosomal protein L4/L1 family AFE_0329 PF00276 Ribosomal protein L23 AFE_0330 PF00181 Ribosomal Proteins L2, RNA binding domain AFE_0330 PF03947 Ribosomal Proteins L2, C-terminal domain AFE_0331 PF00203 Ribosomal protein S19 AFE_0332 PF00237 Ribosomal protein L22p/L17e AFE_0333 PF00189 Ribosomal protein S3, C-terminal domain AFE_0333 PF07650 KH domain AFE_0334 PF00252 Ribosomal protein L16p/L10e AFE_0335 PF00831 Ribosomal L29 protein AFE_0336 PF00366 Ribosomal protein S17 AFE_0337 PF00238 Ribosomal protein L14p/L23e AFE_0338 PF00467 KOW motif AFE_0338 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFE_0339 PF00673 ribosomal L5P family C-terminus AFE_0339 PF00281 Ribosomal protein L5 AFE_0340 PF00253 Ribosomal protein S14p/S29e AFE_0341 PF00410 Ribosomal protein S8 AFE_0342 PF00347 Ribosomal protein L6 AFE_0343 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFE_0344 PF00333 Ribosomal protein S5, N-terminal domain AFE_0344 PF03719 Ribosomal protein S5, C-terminal domain AFE_0345 PF00327 Ribosomal protein L30p/L7e AFE_0346 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFE_0347 PF00344 SecY translocase AFE_0348 PF05191 Adenylate kinase, active site lid AFE_0349 PF01176 Translation initiation factor 1A / IF-1 AFE_0350 PF00444 Ribosomal protein L36 AFE_0351 PF00416 Ribosomal protein S13/S18 AFE_0352 PF00411 Ribosomal protein S11 AFE_0353 PF00163 Ribosomal protein S4/S9 N-terminal domain AFE_0353 PF01479 S4 domain AFE_0354 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFE_0354 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFE_0354 PF01000 RNA polymerase Rpb3/RpoA insert domain AFE_0355 PF01196 Ribosomal protein L17 AFE_0356 PF00692 dUTPase AFE_0357 PF02441 Flavoprotein AFE_0357 PF04127 DNA / pantothenate metabolism flavoprotein AFE_0358 PF04002 RadC-like JAB domain AFE_0360 PF01569 PAP2 superfamily AFE_0365 PF01048 Phosphorylase superfamily AFE_0366 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_0366 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFE_0367 PF08534 Redoxin AFE_0367 PF00462 Glutaredoxin AFE_0368 PF18429 Domain of unknown function (DUF5609) AFE_0369 PF03461 TRCF domain AFE_0369 PF02559 CarD-like/TRCF domain AFE_0369 PF17757 UvrB interaction domain AFE_0369 PF00270 DEAD/DEAH box helicase AFE_0369 PF00271 Helicase conserved C-terminal domain AFE_0370 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFE_0371 PF02542 YgbB family AFE_0372 PF01142 tRNA pseudouridine synthase D (TruD) AFE_0373 PF00376 MerR family regulatory protein AFE_0373 PF09278 MerR, DNA binding AFE_0375 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_0377 PF03548 Outer membrane lipoprotein carrier protein LolA AFE_0379 PF16193 AAA C-terminal domain AFE_0379 PF12002 MgsA AAA+ ATPase C terminal AFE_0379 PF00004 ATPase family associated with various cellular activities (AAA) AFE_0380 PF02403 Seryl-tRNA synthetase N-terminal domain AFE_0380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFE_0382 PF03734 L,D-transpeptidase catalytic domain AFE_0382 PF17969 L,D-transpeptidase C-terminal domain AFE_0389 PF17384 RimP C-terminal SH3 domain AFE_0389 PF02576 RimP N-terminal domain AFE_0390 PF13184 NusA-like KH domain AFE_0390 PF00575 S1 RNA binding domain AFE_0390 PF08529 NusA N-terminal domain AFE_0391 PF08364 Bacterial translation initiation factor IF-2 associated region AFE_0391 PF04760 Translation initiation factor IF-2, N-terminal region AFE_0391 PF00009 Elongation factor Tu GTP binding domain AFE_0391 PF11987 Translation-initiation factor 2 AFE_0392 PF02033 Ribosome-binding factor A AFE_0393 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFE_0393 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFE_0393 PF09157 Pseudouridine synthase II TruB, C-terminal AFE_0394 PF00312 Ribosomal protein S15 AFE_0395 PF00013 KH domain AFE_0395 PF03725 3' exoribonuclease family, domain 2 AFE_0395 PF00575 S1 RNA binding domain AFE_0395 PF01138 3' exoribonuclease family, domain 1 AFE_0395 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFE_0396 PF00675 Insulinase (Peptidase family M16) AFE_0396 PF05193 Peptidase M16 inactive domain AFE_0397 PF00753 Metallo-beta-lactamase superfamily AFE_0397 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFE_0398 PF01209 ubiE/COQ5 methyltransferase family AFE_0399 PF00075 RNase H AFE_0400 PF00929 Exonuclease AFE_0402 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFE_0404 PF00764 Arginosuccinate synthase AFE_0405 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFE_0405 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFE_0406 PF00202 Aminotransferase class-III AFE_0407 PF13840 ACT domain AFE_0407 PF00696 Amino acid kinase family AFE_0407 PF01842 ACT domain AFE_0412 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AFE_0419 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFE_0421 PF01464 Transglycosylase SLT domain AFE_0421 PF01476 LysM domain AFE_0422 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFE_0423 PF00330 Aconitase family (aconitate hydratase) AFE_0424 PF00180 Isocitrate/isopropylmalate dehydrogenase AFE_0425 PF00549 CoA-ligase AFE_0425 PF08442 ATP-grasp domain AFE_0427 PF02629 CoA binding domain AFE_0427 PF00549 CoA-ligase AFE_0428 PF00795 Carbon-nitrogen hydrolase AFE_0428 PF02540 NAD synthase AFE_0429 PF00543 Nitrogen regulatory protein P-II AFE_0430 PF13525 Outer membrane lipoprotein AFE_0431 PF00849 RNA pseudouridylate synthase AFE_0431 PF01479 S4 domain AFE_0433 PF03079 ARD/ARD' family AFE_0434 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFE_0434 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFE_0436 PF00596 Class II Aldolase and Adducin N-terminal domain AFE_0438 PF01327 Polypeptide deformylase AFE_0439 PF13520 Amino acid permease AFE_0441 PF16363 GDP-mannose 4,6 dehydratase AFE_0442 PF04321 RmlD substrate binding domain AFE_0445 PF00483 Nucleotidyl transferase AFE_0447 PF00072 Response regulator receiver domain AFE_0447 PF00158 Sigma-54 interaction domain AFE_0449 PF00512 His Kinase A (phospho-acceptor) domain AFE_0449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_0450 PF02463 RecF/RecN/SMC N terminal domain AFE_0451 PF01513 ATP-NAD kinase AFE_0452 PF03309 Type III pantothenate kinase AFE_0453 PF08279 HTH domain AFE_0453 PF02237 Biotin protein ligase C terminal domain AFE_0453 PF03099 Biotin/lipoate A/B protein ligase family AFE_0454 PF00171 Aldehyde dehydrogenase family AFE_0457 PF06144 DNA polymerase III, delta subunit AFE_0457 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AFE_0459 PF08264 Anticodon-binding domain of tRNA AFE_0459 PF00133 tRNA synthetases class I (I, L, M and V) AFE_0459 PF13603 Leucyl-tRNA synthetase, Domain 2 AFE_0460 PF03358 NADPH-dependent FMN reductase AFE_0461 PF04264 YceI-like domain AFE_0462 PF01427 D-ala-D-ala dipeptidase AFE_0463 PF06827 Zinc finger found in FPG and IleRS AFE_0463 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFE_0463 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFE_0465 PF01545 Cation efflux family AFE_0465 PF16916 Dimerisation domain of Zinc Transporter AFE_0466 PF03951 Glutamine synthetase, beta-Grasp domain AFE_0466 PF00120 Glutamine synthetase, catalytic domain AFE_0468 PF01975 Survival protein SurE AFE_0470 PF04542 Sigma-70 region 2 AFE_0470 PF00140 Sigma-70 factor, region 1.2 AFE_0470 PF04545 Sigma-70, region 4 AFE_0470 PF04539 Sigma-70 region 3 AFE_0471 PF04430 Protein of unknown function (DUF498/DUF598) AFE_0472 PF00155 Aminotransferase class I and II AFE_0473 PF01842 ACT domain AFE_0473 PF00742 Homoserine dehydrogenase AFE_0473 PF03447 Homoserine dehydrogenase, NAD binding domain AFE_0474 PF00291 Pyridoxal-phosphate dependent enzyme AFE_0476 PF17768 RecJ OB domain AFE_0476 PF02272 DHHA1 domain AFE_0476 PF01368 DHH family AFE_0477 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFE_0478 PF01850 PIN domain AFE_0480 PF01336 OB-fold nucleic acid binding domain AFE_0480 PF00152 tRNA synthetases class II (D, K and N) AFE_0481 PF12704 MacB-like periplasmic core domain AFE_0481 PF02687 FtsX-like permease family AFE_0483 PF00005 ABC transporter AFE_0484 PF00753 Metallo-beta-lactamase superfamily AFE_0484 PF03772 Competence protein AFE_0485 PF01618 MotA/TolQ/ExbB proton channel family AFE_0486 PF02472 Biopolymer transport protein ExbD/TolR AFE_0489 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AFE_0490 PF03966 Trm112p-like protein AFE_0491 PF02348 Cytidylyltransferase AFE_0492 PF00719 Inorganic pyrophosphatase AFE_0496 PF00132 Bacterial transferase hexapeptide (six repeats) AFE_0502 PF03992 Antibiotic biosynthesis monooxygenase AFE_0508 PF02899 Phage integrase, N-terminal SAM-like domain AFE_0508 PF00589 Phage integrase family AFE_0509 PF00589 Phage integrase family AFE_0509 PF02899 Phage integrase, N-terminal SAM-like domain AFE_0518 PF03167 Uracil DNA glycosylase superfamily AFE_0519 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AFE_0520 PF10431 C-terminal, D2-small domain, of ClpB protein AFE_0520 PF00004 ATPase family associated with various cellular activities (AAA) AFE_0520 PF07724 AAA domain (Cdc48 subfamily) AFE_0520 PF17871 AAA lid domain AFE_0520 PF02861 Clp amino terminal domain, pathogenicity island component AFE_0521 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFE_0523 PF01965 DJ-1/PfpI family AFE_0524 PF03572 Peptidase family S41 AFE_0524 PF13180 PDZ domain AFE_0526 PF01676 Metalloenzyme superfamily AFE_0526 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AFE_0527 PF00343 Carbohydrate phosphorylase AFE_0529 PF00581 Rhodanese-like domain AFE_0530 PF00294 pfkB family carbohydrate kinase AFE_0532 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFE_0532 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFE_0532 PF02772 S-adenosylmethionine synthetase, central domain AFE_0534 PF05221 S-adenosyl-L-homocysteine hydrolase AFE_0534 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFE_0535 PF02219 Methylenetetrahydrofolate reductase AFE_0536 PF00485 Phosphoribulokinase / Uridine kinase family AFE_0539 PF01747 ATP-sulfurylase AFE_0539 PF14306 PUA-like domain AFE_0540 PF00156 Phosphoribosyl transferase domain AFE_0542 PF00118 TCP-1/cpn60 chaperonin family AFE_0543 PF00166 Chaperonin 10 Kd subunit AFE_0545 PF11412 Disulphide bond corrector protein DsbC AFE_0545 PF02683 Cytochrome C biogenesis protein transmembrane region AFE_0547 PF01063 Amino-transferase class IV AFE_0548 PF03710 Glutamate-ammonia ligase adenylyltransferase AFE_0548 PF08335 GlnD PII-uridylyltransferase AFE_0551 PF00795 Carbon-nitrogen hydrolase AFE_0552 PF00005 ABC transporter AFE_0552 PF06472 ABC transporter transmembrane region 2 AFE_0555 PF01252 Signal peptidase (SPase) II AFE_0556 PF08264 Anticodon-binding domain of tRNA AFE_0556 PF06827 Zinc finger found in FPG and IleRS AFE_0556 PF00133 tRNA synthetases class I (I, L, M and V) AFE_0557 PF06574 FAD synthetase AFE_0557 PF01687 Riboflavin kinase AFE_0559 PF03023 Lipid II flippase MurJ AFE_0562 PF03755 YicC-like family, N-terminal region AFE_0562 PF08340 Domain of unknown function (DUF1732) AFE_0563 PF00625 Guanylate kinase AFE_0564 PF01192 RNA polymerase Rpb6 AFE_0565 PF13291 ACT domain AFE_0565 PF04607 Region found in RelA / SpoT proteins AFE_0565 PF02824 TGS domain AFE_0566 PF01042 Endoribonuclease L-PSP AFE_0568 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AFE_0568 PF00270 DEAD/DEAH box helicase AFE_0568 PF17191 RecG wedge domain AFE_0571 PF01594 AI-2E family transporter AFE_0572 PF01875 Memo-like protein AFE_0573 PF01871 AMMECR1 AFE_0574 PF04055 Radical SAM superfamily AFE_0575 PF02321 Outer membrane efflux protein AFE_0576 PF04715 Anthranilate synthase component I, N terminal region AFE_0576 PF00425 chorismate binding enzyme AFE_0589 PF00270 DEAD/DEAH box helicase AFE_0589 PF03880 DbpA RNA binding domain AFE_0589 PF00271 Helicase conserved C-terminal domain AFE_0590 PF00313 'Cold-shock' DNA-binding domain AFE_0591 PF17764 3′ DNA-binding domain (3′BD) AFE_0591 PF18074 Primosomal protein N C-terminal domain AFE_0591 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AFE_0591 PF00271 Helicase conserved C-terminal domain AFE_0591 PF00270 DEAD/DEAH box helicase AFE_0594 PF00398 Ribosomal RNA adenine dimethylase AFE_0596 PF04055 Radical SAM superfamily AFE_0596 PF00919 Uncharacterized protein family UPF0004 AFE_0596 PF01938 TRAM domain AFE_0597 PF02562 PhoH-like protein AFE_0598 PF02130 Uncharacterized protein family UPF0054 AFE_0599 PF00571 CBS domain AFE_0599 PF03471 Transporter associated domain AFE_0600 PF01523 Putative modulator of DNA gyrase AFE_0601 PF00795 Carbon-nitrogen hydrolase AFE_0603 PF00005 ABC transporter AFE_0605 PF00950 ABC 3 transport family AFE_0609 PF01370 NAD dependent epimerase/dehydratase family AFE_0615 PF13439 Glycosyltransferase Family 4 AFE_0615 PF00534 Glycosyl transferases group 1 AFE_0616 PF13439 Glycosyltransferase Family 4 AFE_0616 PF00534 Glycosyl transferases group 1 AFE_0617 PF00005 ABC transporter AFE_0617 PF00664 ABC transporter transmembrane region AFE_0618 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFE_0618 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFE_0618 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFE_0621 PF00300 Histidine phosphatase superfamily (branch 1) AFE_0621 PF13456 Reverse transcriptase-like AFE_0623 PF08241 Methyltransferase domain AFE_0624 PF00330 Aconitase family (aconitate hydratase) AFE_0626 PF00694 Aconitase C-terminal domain AFE_0628 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AFE_0628 PF01243 Pyridoxamine 5'-phosphate oxidase AFE_0629 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AFE_0631 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFE_0631 PF06481 COX Aromatic Rich Motif AFE_0632 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFE_0633 PF00510 Cytochrome c oxidase subunit III AFE_0635 PF01040 UbiA prenyltransferase family AFE_0636 PF02673 Bacitracin resistance protein BacA AFE_0637 PF07690 Major Facilitator Superfamily AFE_0638 PF03449 Transcription elongation factor, N-terminal AFE_0638 PF01272 Transcription elongation factor, GreA/GreB, C-term AFE_0639 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFE_0639 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFE_0639 PF02142 MGS-like domain AFE_0640 PF00117 Glutamine amidotransferase class-I AFE_0640 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFE_0642 PF05690 Thiazole biosynthesis protein ThiG AFE_0642 PF02597 ThiS family AFE_0643 PF05690 Thiazole biosynthesis protein ThiG AFE_0645 PF08245 Mur ligase middle domain AFE_0645 PF02875 Mur ligase family, glutamate ligase domain AFE_0645 PF01225 Mur ligase family, catalytic domain AFE_0646 PF00005 ABC transporter AFE_0647 PF02441 Flavoprotein AFE_0648 PF02405 Permease MlaE AFE_0652 PF00899 ThiF family AFE_0655 PF00005 ABC transporter AFE_0657 PF00085 Thioredoxin AFE_0658 PF07497 Rho termination factor, RNA-binding domain AFE_0658 PF07498 Rho termination factor, N-terminal domain AFE_0658 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFE_0659 PF01197 Ribosomal protein L31 AFE_0660 PF00390 Malic enzyme, N-terminal domain AFE_0660 PF03949 Malic enzyme, NAD binding domain AFE_0661 PF01594 AI-2E family transporter AFE_0662 PF00920 Dehydratase family AFE_0664 PF00696 Amino acid kinase family AFE_0664 PF00583 Acetyltransferase (GNAT) family AFE_0665 PF01722 BolA-like protein AFE_0666 PF03795 YCII-related domain AFE_0667 PF04279 Intracellular septation protein A AFE_0669 PF00459 Inositol monophosphatase family AFE_0670 PF00588 SpoU rRNA Methylase family AFE_0671 PF00132 Bacterial transferase hexapeptide (six repeats) AFE_0672 PF02082 Transcriptional regulator AFE_0673 PF00266 Aminotransferase class-V AFE_0674 PF01592 NifU-like N terminal domain AFE_0675 PF01521 Iron-sulphur cluster biosynthesis AFE_0676 PF07743 HSCB C-terminal oligomerisation domain AFE_0677 PF00012 Hsp70 protein AFE_0678 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_0679 PF04384 Iron-sulphur cluster assembly AFE_0681 PF01734 Patatin-like phospholipase AFE_0683 PF08463 EcoEI R protein C-terminal AFE_0683 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AFE_0683 PF04851 Type III restriction enzyme, res subunit AFE_0683 PF00271 Helicase conserved C-terminal domain AFE_0684 PF12161 HsdM N-terminal domain AFE_0684 PF02384 N-6 DNA Methylase AFE_0686 PF01420 Type I restriction modification DNA specificity domain AFE_0690 PF02634 FdhD/NarQ family AFE_0692 PF00384 Molybdopterin oxidoreductase AFE_0692 PF01568 Molydopterin dinucleotide binding domain AFE_0693 PF01590 GAF domain AFE_0693 PF02954 Bacterial regulatory protein, Fis family AFE_0693 PF00158 Sigma-54 interaction domain AFE_0696 PF04828 Glutathione-dependent formaldehyde-activating enzyme AFE_0697 PF00107 Zinc-binding dehydrogenase AFE_0697 PF08240 Alcohol dehydrogenase GroES-like domain AFE_0698 PF00756 Putative esterase AFE_0699 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_0699 PF03466 LysR substrate binding domain AFE_0700 PF00072 Response regulator receiver domain AFE_0700 PF00158 Sigma-54 interaction domain AFE_0700 PF02954 Bacterial regulatory protein, Fis family AFE_0702 PF00374 Nickel-dependent hydrogenase AFE_0710 PF01106 NifU-like domain AFE_0712 PF00708 Acylphosphatase AFE_0712 PF07503 HypF finger AFE_0712 PF01300 Telomere recombination AFE_0712 PF17788 HypF Kae1-like domain AFE_0713 PF01455 HupF/HypC family AFE_0714 PF13580 SIS domain AFE_0715 PF01924 Hydrogenase formation hypA family AFE_0716 PF02769 AIR synthase related protein, C-terminal domain AFE_0716 PF00586 AIR synthase related protein, N-terminal domain AFE_0717 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AFE_0718 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFE_0720 PF01266 FAD dependent oxidoreductase AFE_0722 PF00291 Pyridoxal-phosphate dependent enzyme AFE_0722 PF00585 C-terminal regulatory domain of Threonine dehydratase AFE_0727 PF01553 Acyltransferase AFE_0728 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFE_0729 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_0729 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFE_0730 PF01493 GXGXG motif AFE_0730 PF01645 Conserved region in glutamate synthase AFE_0730 PF00310 Glutamine amidotransferases class-II AFE_0730 PF04898 Glutamate synthase central domain AFE_0731 PF13286 Phosphohydrolase-associated domain AFE_0731 PF01966 HD domain AFE_0732 PF02511 Thymidylate synthase complementing protein AFE_0733 PF01761 3-dehydroquinate synthase AFE_0734 PF01202 Shikimate kinase AFE_0735 PF07660 Secretin and TonB N terminus short domain AFE_0735 PF00263 Bacterial type II and III secretion system protein AFE_0735 PF03958 Bacterial type II/III secretion system short domain AFE_0735 PF11741 AMIN domain AFE_0741 PF14437 MafB19-like deaminase AFE_0742 PF01894 Uncharacterised protein family UPF0047 AFE_0744 PF00488 MutS domain V AFE_0744 PF01713 Smr domain AFE_0745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFE_0745 PF00205 Thiamine pyrophosphate enzyme, central domain AFE_0745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFE_0746 PF10369 Small subunit of acetolactate synthase AFE_0747 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFE_0747 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFE_0748 PF02666 Phosphatidylserine decarboxylase AFE_0749 PF02887 Pyruvate kinase, alpha/beta domain AFE_0749 PF00224 Pyruvate kinase, barrel domain AFE_0750 PF01066 CDP-alcohol phosphatidyltransferase AFE_0751 PF00582 Universal stress protein family AFE_0752 PF14489 QueF-like protein AFE_0753 PF02463 RecF/RecN/SMC N terminal domain AFE_0753 PF06470 SMC proteins Flexible Hinge Domain AFE_0757 PF12826 Helix-hairpin-helix motif AFE_0757 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFE_0757 PF03120 NAD-dependent DNA ligase OB-fold domain AFE_0757 PF01653 NAD-dependent DNA ligase adenylation domain AFE_0757 PF00533 BRCA1 C Terminus (BRCT) domain AFE_0758 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AFE_0758 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFE_0759 PF08241 Methyltransferase domain AFE_0761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_0761 PF03466 LysR substrate binding domain AFE_0764 PF01925 Sulfite exporter TauE/SafE AFE_0768 PF01618 MotA/TolQ/ExbB proton channel family AFE_0769 PF02472 Biopolymer transport protein ExbD/TolR AFE_0772 PF01979 Amidohydrolase family AFE_0773 PF00962 Adenosine/AMP deaminase AFE_0775 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFE_0775 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_0775 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFE_0775 PF01799 [2Fe-2S] binding domain AFE_0776 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_0776 PF01799 [2Fe-2S] binding domain AFE_0779 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) AFE_0780 PF02625 XdhC and CoxI family AFE_0780 PF13478 XdhC Rossmann domain AFE_0782 PF01425 Amidase AFE_0784 PF12804 MobA-like NTP transferase domain AFE_0787 PF01522 Polysaccharide deacetylase AFE_0788 PF04820 Tryptophan halogenase AFE_0791 PF00999 Sodium/hydrogen exchanger family AFE_0796 PF00109 Beta-ketoacyl synthase, N-terminal domain AFE_0796 PF02801 Beta-ketoacyl synthase, C-terminal domain AFE_0809 PF01799 [2Fe-2S] binding domain AFE_0809 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFE_0809 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFE_0810 PF01799 [2Fe-2S] binding domain AFE_0810 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_0813 PF07690 Major Facilitator Superfamily AFE_0814 PF00654 Voltage gated chloride channel AFE_0815 PF00654 Voltage gated chloride channel AFE_0817 PF03466 LysR substrate binding domain AFE_0817 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_0818 PF00689 Cation transporting ATPase, C-terminus AFE_0818 PF00690 Cation transporter/ATPase, N-terminus AFE_0827 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AFE_0827 PF00270 DEAD/DEAH box helicase AFE_0827 PF17191 RecG wedge domain AFE_0833 PF02899 Phage integrase, N-terminal SAM-like domain AFE_0833 PF00589 Phage integrase family AFE_0834 PF00589 Phage integrase family AFE_0834 PF02899 Phage integrase, N-terminal SAM-like domain AFE_0837 PF13401 AAA domain AFE_0837 PF01471 Putative peptidoglycan binding domain AFE_0841 PF18766 SWI2/SNF2 ATPase AFE_0841 PF11867 Domain of unknown function (DUF3387) AFE_0841 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFE_0845 PF04851 Type III restriction enzyme, res subunit AFE_0845 PF00271 Helicase conserved C-terminal domain AFE_0845 PF17757 UvrB interaction domain AFE_0845 PF02151 UvrB/uvrC motif AFE_0845 PF12344 Ultra-violet resistance protein B AFE_0846 PF00107 Zinc-binding dehydrogenase AFE_0846 PF08240 Alcohol dehydrogenase GroES-like domain AFE_0847 PF06418 CTP synthase N-terminus AFE_0847 PF00117 Glutamine amidotransferase class-I AFE_0848 PF00793 DAHP synthetase I family AFE_0849 PF03952 Enolase, N-terminal domain AFE_0849 PF00113 Enolase, C-terminal TIM barrel domain AFE_0850 PF04977 Septum formation initiator AFE_0851 PF01132 Elongation factor P (EF-P) OB domain AFE_0851 PF08207 Elongation factor P (EF-P) KOW-like domain AFE_0851 PF09285 Elongation factor P, C-terminal AFE_0853 PF01541 GIY-YIG catalytic domain AFE_0853 PF02151 UvrB/uvrC motif AFE_0853 PF08459 UvrC Helix-hairpin-helix N-terminal AFE_0854 PF01066 CDP-alcohol phosphatidyltransferase AFE_0857 PF13545 Crp-like helix-turn-helix domain AFE_0857 PF00027 Cyclic nucleotide-binding domain AFE_0858 PF04343 Protein of unknown function, DUF488 AFE_0859 PF14759 Reductase C-terminal AFE_0859 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_0860 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_0860 PF00175 Oxidoreductase NAD-binding domain AFE_0860 PF00970 Oxidoreductase FAD-binding domain AFE_0861 PF00175 Oxidoreductase NAD-binding domain AFE_0861 PF00042 Globin AFE_0861 PF00970 Oxidoreductase FAD-binding domain AFE_0862 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_0862 PF00529 HlyD membrane-fusion protein of T1SS AFE_0863 PF02321 Outer membrane efflux protein AFE_0864 PF07690 Major Facilitator Superfamily AFE_0866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_0866 PF03466 LysR substrate binding domain AFE_0869 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFE_0872 PF05362 Lon protease (S16) C-terminal proteolytic domain AFE_0872 PF00004 ATPase family associated with various cellular activities (AAA) AFE_0872 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFE_0878 PF00583 Acetyltransferase (GNAT) family AFE_0879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_0879 PF03466 LysR substrate binding domain AFE_0882 PF01593 Flavin containing amine oxidoreductase AFE_0888 PF01906 Putative heavy-metal-binding AFE_0890 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AFE_0892 PF10672 S-adenosylmethionine-dependent methyltransferase AFE_0892 PF17785 PUA-like domain AFE_0893 PF01008 Initiation factor 2 subunit family AFE_0894 PF00521 DNA gyrase/topoisomerase IV, subunit A AFE_0894 PF03989 DNA gyrase C-terminal domain, beta-propeller AFE_0895 PF00266 Aminotransferase class-V AFE_0896 PF01842 ACT domain AFE_0896 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFE_0896 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFE_0897 PF01842 ACT domain AFE_0897 PF00800 Prephenate dehydratase AFE_0897 PF01817 Chorismate mutase type II AFE_0898 PF00155 Aminotransferase class I and II AFE_0899 PF00793 DAHP synthetase I family AFE_0899 PF18152 DAHP synthase ferredoxin-like domain AFE_0900 PF01842 ACT domain AFE_0900 PF02153 Prephenate dehydrogenase AFE_0901 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFE_0902 PF02224 Cytidylate kinase AFE_0903 PF00575 S1 RNA binding domain AFE_0905 PF00216 Bacterial DNA-binding protein AFE_0906 PF18073 Rubredoxin metal binding domain AFE_0907 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFE_0908 PF00156 Phosphoribosyl transferase domain AFE_0909 PF05697 Bacterial trigger factor protein (TF) AFE_0909 PF05698 Bacterial trigger factor protein (TF) C-terminus AFE_0909 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFE_0910 PF00574 Clp protease AFE_0911 PF06689 ClpX C4-type zinc finger AFE_0911 PF10431 C-terminal, D2-small domain, of ClpB protein AFE_0911 PF07724 AAA domain (Cdc48 subfamily) AFE_0912 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFE_0912 PF00004 ATPase family associated with various cellular activities (AAA) AFE_0912 PF05362 Lon protease (S16) C-terminal proteolytic domain AFE_0914 PF00216 Bacterial DNA-binding protein AFE_0918 PF01569 PAP2 superfamily AFE_0922 PF07690 Major Facilitator Superfamily AFE_0923 PF04356 Protein of unknown function (DUF489) AFE_0924 PF01842 ACT domain AFE_0924 PF01909 Nucleotidyltransferase domain AFE_0924 PF01966 HD domain AFE_0924 PF08335 GlnD PII-uridylyltransferase AFE_0925 PF00557 Metallopeptidase family M24 AFE_0926 PF03749 Sugar fermentation stimulation protein RE domain AFE_0926 PF17746 SfsA N-terminal OB domain AFE_0927 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFE_0928 PF00586 AIR synthase related protein, N-terminal domain AFE_0928 PF02769 AIR synthase related protein, C-terminal domain AFE_0929 PF04608 Phosphatidylglycerophosphatase A AFE_0932 PF00154 recA bacterial DNA recombination protein AFE_0933 PF02631 RecX family AFE_0934 PF01411 tRNA synthetases class II (A) AFE_0934 PF02272 DHHA1 domain AFE_0934 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFE_0939 PF00970 Oxidoreductase FAD-binding domain AFE_0939 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_0939 PF00175 Oxidoreductase NAD-binding domain AFE_0941 PF10145 Phage-related minor tail protein AFE_0941 PF01551 Peptidase family M23 AFE_0941 PF01464 Transglycosylase SLT domain AFE_0942 PF00176 SNF2 family N-terminal domain AFE_0942 PF00271 Helicase conserved C-terminal domain AFE_0942 PF12419 SNF2 Helicase protein AFE_0943 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFE_0943 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFE_0943 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFE_0943 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFE_0945 PF00005 ABC transporter AFE_0945 PF12848 ABC transporter AFE_0948 PF01964 Radical SAM ThiC family AFE_0948 PF13667 ThiC-associated domain AFE_0950 PF00732 GMC oxidoreductase AFE_0950 PF05199 GMC oxidoreductase AFE_0951 PF00171 Aldehyde dehydrogenase family AFE_0954 PF02322 Cytochrome bd terminal oxidase subunit II AFE_0955 PF01654 Cytochrome bd terminal oxidase subunit I AFE_0957 PF02954 Bacterial regulatory protein, Fis family AFE_0957 PF00158 Sigma-54 interaction domain AFE_0957 PF00072 Response regulator receiver domain AFE_0958 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_0958 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFE_0959 PF02230 Phospholipase/Carboxylesterase AFE_0960 PF04349 Periplasmic glucan biosynthesis protein, MdoG AFE_0962 PF00535 Glycosyl transferase family 2 AFE_0964 PF04241 Protein of unknown function (DUF423) AFE_0972 PF00482 Type II secretion system (T2SS), protein F AFE_0973 PF01343 Peptidase family S49 AFE_0973 PF08496 Peptidase family S49 N-terminal AFE_0975 PF02597 ThiS family AFE_0976 PF02391 MoaE protein AFE_0977 PF04461 Protein of unknown function (DUF520) AFE_0979 PF01571 Aminomethyltransferase folate-binding domain AFE_0979 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFE_0980 PF01597 Glycine cleavage H-protein AFE_0981 PF02347 Glycine cleavage system P-protein AFE_0982 PF02347 Glycine cleavage system P-protein AFE_0983 PF00664 ABC transporter transmembrane region AFE_0983 PF00005 ABC transporter AFE_0984 PF11953 Domain of unknown function (DUF3470) AFE_0984 PF00037 4Fe-4S binding domain AFE_0985 PF00578 AhpC/TSA family AFE_0985 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFE_0987 PF02811 PHP domain AFE_0988 PF01594 AI-2E family transporter AFE_0991 PF00588 SpoU rRNA Methylase family AFE_0991 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFE_0992 PF01026 TatD related DNase AFE_0993 PF03099 Biotin/lipoate A/B protein ligase family AFE_0993 PF12706 Beta-lactamase superfamily domain AFE_0995 PF00589 Phage integrase family AFE_0998 PF01381 Helix-turn-helix AFE_0998 PF00717 Peptidase S24-like AFE_1007 PF10145 Phage-related minor tail protein AFE_1007 PF01464 Transglycosylase SLT domain AFE_1007 PF01551 Peptidase family M23 AFE_1013 PF01131 DNA topoisomerase AFE_1013 PF01751 Toprim domain AFE_1013 PF01396 Topoisomerase DNA binding C4 zinc finger AFE_1016 PF02600 Disulfide bond formation protein DsbB AFE_1022 PF01734 Patatin-like phospholipase AFE_1024 PF02163 Peptidase family M50 AFE_1033 PF00239 Resolvase, N terminal domain AFE_1047 PF14490 Helix-hairpin-helix containing domain AFE_1047 PF13538 UvrD-like helicase C-terminal domain AFE_1047 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AFE_1057 PF13181 Tetratricopeptide repeat AFE_1058 PF01385 Probable transposase AFE_1058 PF12323 Helix-turn-helix domain AFE_1058 PF07282 Putative transposase DNA-binding domain AFE_1073 PF02498 BRO family, N-terminal domain AFE_1073 PF10548 P22AR C-terminal domain AFE_1087 PF00437 Type II/IV secretion system protein AFE_1091 PF10502 Signal peptidase, peptidase S26 AFE_1098 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFE_1105 PF00239 Resolvase, N terminal domain AFE_1114 PF01435 Peptidase family M48 AFE_1115 PF00149 Calcineurin-like phosphoesterase AFE_1130 PF09397 Ftsk gamma domain AFE_1130 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AFE_1130 PF17854 FtsK alpha domain AFE_1130 PF01580 FtsK/SpoIIIE family AFE_1137 PF13361 UvrD-like helicase C-terminal domain AFE_1137 PF00580 UvrD/REP helicase N-terminal domain AFE_1145 PF00589 Phage integrase family AFE_1145 PF02899 Phage integrase, N-terminal SAM-like domain AFE_1199 PF00075 RNase H AFE_1201 PF08721 TnsA endonuclease C terminal AFE_1201 PF08722 TnsA endonuclease N terminal AFE_1202 PF00665 Integrase core domain AFE_1203 PF13401 AAA domain AFE_1203 PF11426 Tn7 transposition regulator TnsC AFE_1211 PF13181 Tetratricopeptide repeat AFE_1215 PF12323 Helix-turn-helix domain AFE_1215 PF07282 Putative transposase DNA-binding domain AFE_1215 PF01385 Probable transposase AFE_1221 PF01555 DNA methylase AFE_1241 PF00216 Bacterial DNA-binding protein AFE_1260 PF00436 Single-strand binding protein family AFE_1295 PF02954 Bacterial regulatory protein, Fis family AFE_1295 PF00158 Sigma-54 interaction domain AFE_1295 PF00072 Response regulator receiver domain AFE_1296 PF03466 LysR substrate binding domain AFE_1296 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_1321 PF01906 Putative heavy-metal-binding AFE_1326 PF10548 P22AR C-terminal domain AFE_1326 PF08346 AntA/AntB antirepressor AFE_1330 PF00872 Transposase, Mutator family AFE_1338 PF01569 PAP2 superfamily AFE_1339 PF02563 Polysaccharide biosynthesis/export protein AFE_1339 PF10531 SLBB domain AFE_1340 PF13614 AAA domain AFE_1340 PF02706 Chain length determinant protein AFE_1340 PF13807 G-rich domain on putative tyrosine kinase AFE_1342 PF16363 GDP-mannose 4,6 dehydratase AFE_1343 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFE_1343 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFE_1343 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFE_1344 PF14667 Polysaccharide biosynthesis C-terminal domain AFE_1344 PF01943 Polysaccharide biosynthesis protein AFE_1346 PF00535 Glycosyl transferase family 2 AFE_1349 PF00534 Glycosyl transferases group 1 AFE_1349 PF13439 Glycosyltransferase Family 4 AFE_1351 PF00534 Glycosyl transferases group 1 AFE_1351 PF13439 Glycosyltransferase Family 4 AFE_1353 PF13537 Glutamine amidotransferase domain AFE_1353 PF00733 Asparagine synthase AFE_1354 PF13439 Glycosyltransferase Family 4 AFE_1354 PF00534 Glycosyl transferases group 1 AFE_1355 PF13439 Glycosyltransferase Family 4 AFE_1355 PF00534 Glycosyl transferases group 1 AFE_1357 PF13439 Glycosyltransferase Family 4 AFE_1357 PF00534 Glycosyl transferases group 1 AFE_1362 PF01850 PIN domain AFE_1366 PF00483 Nucleotidyl transferase AFE_1366 PF01050 Mannose-6-phosphate isomerase AFE_1370 PF02397 Bacterial sugar transferase AFE_1371 PF00176 SNF2 family N-terminal domain AFE_1371 PF00271 Helicase conserved C-terminal domain AFE_1371 PF12419 SNF2 Helicase protein AFE_1373 PF01695 IstB-like ATP binding protein AFE_1375 PF17342 Family of unknown function (DUF5372) AFE_1378 PF07508 Recombinase AFE_1378 PF00239 Resolvase, N terminal domain AFE_1378 PF13408 Recombinase zinc beta ribbon domain AFE_1388 PF00664 ABC transporter transmembrane region AFE_1388 PF00005 ABC transporter AFE_1390 PF00664 ABC transporter transmembrane region AFE_1390 PF00005 ABC transporter AFE_1391 PF01571 Aminomethyltransferase folate-binding domain AFE_1392 PF00890 FAD binding domain AFE_1392 PF02910 Fumarate reductase flavoprotein C-term AFE_1394 PF04542 Sigma-70 region 2 AFE_1394 PF08281 Sigma-70, region 4 AFE_1396 PF13180 PDZ domain AFE_1397 PF00009 Elongation factor Tu GTP binding domain AFE_1397 PF03144 Elongation factor Tu domain 2 AFE_1397 PF00679 Elongation factor G C-terminus AFE_1397 PF06421 GTP-binding protein LepA C-terminus AFE_1398 PF10502 Signal peptidase, peptidase S26 AFE_1400 PF14622 Ribonuclease-III-like AFE_1400 PF00035 Double-stranded RNA binding motif AFE_1401 PF01926 50S ribosome-binding GTPase AFE_1401 PF07650 KH domain AFE_1402 PF02565 Recombination protein O C terminal AFE_1402 PF11967 Recombination protein O N terminal AFE_1403 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AFE_1404 PF01648 4'-phosphopantetheinyl transferase superfamily AFE_1405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFE_1405 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFE_1405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFE_1406 PF01467 Cytidylyltransferase-like AFE_1406 PF00294 pfkB family carbohydrate kinase AFE_1407 PF01171 PP-loop family AFE_1408 PF01430 Hsp33 protein AFE_1412 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system AFE_1425 PF00534 Glycosyl transferases group 1 AFE_1425 PF13439 Glycosyltransferase Family 4 AFE_1427 PF13439 Glycosyltransferase Family 4 AFE_1427 PF00534 Glycosyl transferases group 1 AFE_1429 PF00034 Cytochrome c AFE_1430 PF01545 Cation efflux family AFE_1433 PF00270 DEAD/DEAH box helicase AFE_1433 PF00271 Helicase conserved C-terminal domain AFE_1434 PF00486 Transcriptional regulatory protein, C terminal AFE_1434 PF00072 Response regulator receiver domain AFE_1435 PF11808 Phosphate regulon sensor protein PhoR AFE_1435 PF00512 His Kinase A (phospho-acceptor) domain AFE_1435 PF00989 PAS fold AFE_1435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_1436 PF12849 PBP superfamily domain AFE_1437 PF00528 Binding-protein-dependent transport system inner membrane component AFE_1438 PF00528 Binding-protein-dependent transport system inner membrane component AFE_1439 PF00005 ABC transporter AFE_1440 PF01895 PhoU domain AFE_1441 PF02541 Ppx/GppA phosphatase family AFE_1444 PF00318 Ribosomal protein S2 AFE_1445 PF00889 Elongation factor TS AFE_1446 PF00696 Amino acid kinase family AFE_1447 PF01765 Ribosome recycling factor AFE_1448 PF01255 Putative undecaprenyl diphosphate synthase AFE_1450 PF13288 DXP reductoisomerase C-terminal domain AFE_1450 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFE_1450 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFE_1451 PF17820 PDZ domain AFE_1451 PF02163 Peptidase family M50 AFE_1452 PF01103 Surface antigen AFE_1452 PF07244 Surface antigen variable number repeat AFE_1454 PF00132 Bacterial transferase hexapeptide (six repeats) AFE_1454 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AFE_1455 PF07977 FabA-like domain AFE_1456 PF00132 Bacterial transferase hexapeptide (six repeats) AFE_1456 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AFE_1457 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFE_1457 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFE_1458 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFE_1459 PF02684 Lipid-A-disaccharide synthetase AFE_1460 PF01351 Ribonuclease HII AFE_1461 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFE_1461 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFE_1461 PF14579 Helix-hairpin-helix motif AFE_1461 PF02811 PHP domain AFE_1461 PF01336 OB-fold nucleic acid binding domain AFE_1462 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFE_1463 PF01979 Amidohydrolase family AFE_1464 PF01171 PP-loop family AFE_1464 PF09179 TilS substrate binding domain AFE_1464 PF11734 TilS substrate C-terminal domain AFE_1465 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFE_1466 PF13419 Haloacid dehalogenase-like hydrolase AFE_1468 PF00578 AhpC/TSA family AFE_1469 PF02562 PhoH-like protein AFE_1469 PF13638 PIN domain AFE_1471 PF17810 Arginine decarboxylase helical bundle domain AFE_1471 PF17944 Arginine decarboxylase C-terminal helical extension AFE_1471 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFE_1472 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFE_1478 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_1479 PF01012 Electron transfer flavoprotein domain AFE_1479 PF00766 Electron transfer flavoprotein FAD-binding domain AFE_1480 PF01012 Electron transfer flavoprotein domain AFE_1482 PF01152 Bacterial-like globin AFE_1485 PF01618 MotA/TolQ/ExbB proton channel family AFE_1486 PF02472 Biopolymer transport protein ExbD/TolR AFE_1491 PF00005 ABC transporter AFE_1495 PF01032 FecCD transport family AFE_1502 PF00581 Rhodanese-like domain AFE_1504 PF03206 Nitrogen fixation protein NifW AFE_1505 PF00132 Bacterial transferase hexapeptide (six repeats) AFE_1506 PF00682 HMGL-like AFE_1507 PF00266 Aminotransferase class-V AFE_1508 PF04324 BFD-like [2Fe-2S] binding domain AFE_1508 PF01592 NifU-like N terminal domain AFE_1508 PF01106 NifU-like domain AFE_1509 PF01521 Iron-sulphur cluster biosynthesis AFE_1511 PF04891 NifQ AFE_1512 PF12838 4Fe-4S dicluster domain AFE_1513 PF05082 Rop-like AFE_1514 PF03270 Protein of unknown function, DUF269 AFE_1515 PF02579 Dinitrogenase iron-molybdenum cofactor AFE_1516 PF00148 Nitrogenase component 1 type Oxidoreductase AFE_1517 PF04324 BFD-like [2Fe-2S] binding domain AFE_1517 PF00148 Nitrogenase component 1 type Oxidoreductase AFE_1519 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_1520 PF00148 Nitrogenase component 1 type Oxidoreductase AFE_1520 PF11844 Domain of unknown function (DUF3364) AFE_1521 PF00148 Nitrogenase component 1 type Oxidoreductase AFE_1522 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AFE_1524 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) AFE_1525 PF03747 ADP-ribosylglycohydrolase AFE_1527 PF01590 GAF domain AFE_1527 PF00158 Sigma-54 interaction domain AFE_1527 PF02954 Bacterial regulatory protein, Fis family AFE_1529 PF04055 Radical SAM superfamily AFE_1529 PF02579 Dinitrogenase iron-molybdenum cofactor AFE_1530 PF00037 4Fe-4S binding domain AFE_1531 PF01521 Iron-sulphur cluster biosynthesis AFE_1534 PF01816 Leucine rich repeat variant AFE_1534 PF05484 LRV protein FeS4 cluster AFE_1535 PF04319 NifZ domain AFE_1537 PF00266 Aminotransferase class-V AFE_1538 PF06988 NifT/FixU protein AFE_1540 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFE_1541 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_1544 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFE_1544 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFE_1545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_1545 PF03459 TOBE domain AFE_1546 PF00171 Aldehyde dehydrogenase family AFE_1550 PF00294 pfkB family carbohydrate kinase AFE_1551 PF00862 Sucrose synthase AFE_1551 PF00534 Glycosyl transferases group 1 AFE_1552 PF00534 Glycosyl transferases group 1 AFE_1552 PF00862 Sucrose synthase AFE_1553 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFE_1553 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFE_1556 PF00589 Phage integrase family AFE_1556 PF02899 Phage integrase, N-terminal SAM-like domain AFE_1564 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT AFE_1566 PF01695 IstB-like ATP binding protein AFE_1569 PF00436 Single-strand binding protein family AFE_1572 PF13086 AAA domain AFE_1572 PF13087 AAA domain AFE_1572 PF13086 AAA domain AFE_1572 PF13195 Protein of unknown function (DUF4011) AFE_1572 PF13195 Protein of unknown function (DUF4011) AFE_1572 PF13087 AAA domain AFE_1575 PF00271 Helicase conserved C-terminal domain AFE_1575 PF08463 EcoEI R protein C-terminal AFE_1575 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AFE_1575 PF04851 Type III restriction enzyme, res subunit AFE_1577 PF02384 N-6 DNA Methylase AFE_1577 PF12161 HsdM N-terminal domain AFE_1578 PF01850 PIN domain AFE_1579 PF09957 Bacterial antitoxin of type II TA system, VapB AFE_1583 PF00216 Bacterial DNA-binding protein AFE_1584 PF00216 Bacterial DNA-binding protein AFE_1589 PF04221 RelB antitoxin AFE_1591 PF00501 AMP-binding enzyme AFE_1591 PF13193 AMP-binding enzyme C-terminal domain AFE_1591 PF01553 Acyltransferase AFE_1597 PF00665 Integrase core domain AFE_1605 PF00005 ABC transporter AFE_1606 PF00005 ABC transporter AFE_1607 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_1610 PF01527 Transposase AFE_1614 PF12728 Helix-turn-helix domain AFE_1631 PF01381 Helix-turn-helix AFE_1634 PF00437 Type II/IV secretion system protein AFE_1638 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AFE_1646 PF13180 PDZ domain AFE_1648 PF00011 Hsp20/alpha crystallin family AFE_1651 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFE_1651 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFE_1652 PF00384 Molybdopterin oxidoreductase AFE_1654 PF02634 FdhD/NarQ family AFE_1656 PF00175 Oxidoreductase NAD-binding domain AFE_1656 PF00111 2Fe-2S iron-sulfur cluster binding domain AFE_1656 PF00970 Oxidoreductase FAD-binding domain AFE_1657 PF03063 Prismane/CO dehydrogenase family AFE_1658 PF00027 Cyclic nucleotide-binding domain AFE_1658 PF13545 Crp-like helix-turn-helix domain AFE_1661 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AFE_1662 PF00361 Proton-conducting membrane transporter AFE_1662 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFE_1663 PF13183 4Fe-4S dicluster domain AFE_1663 PF02754 Cysteine-rich domain AFE_1664 PF01565 FAD binding domain AFE_1665 PF02913 FAD linked oxidases, C-terminal domain AFE_1665 PF01565 FAD binding domain AFE_1668 PF09339 IclR helix-turn-helix domain AFE_1668 PF01614 Bacterial transcriptional regulator AFE_1672 PF01979 Amidohydrolase family AFE_1673 PF00920 Dehydratase family AFE_1674 PF01300 Telomere recombination AFE_1674 PF03481 Putative GTP-binding controlling metal-binding AFE_1676 PF01116 Fructose-bisphosphate aldolase class-II AFE_1678 PF08406 CbbQ/NirQ/NorQ C-terminal AFE_1678 PF07728 AAA domain (dynein-related subfamily) AFE_1680 PF13614 AAA domain AFE_1682 PF00210 Ferritin-like domain AFE_1687 PF03319 Ethanolamine utilisation protein EutN/carboxysome AFE_1690 PF00101 Ribulose bisphosphate carboxylase, small chain AFE_1691 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFE_1691 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFE_1692 PF03466 LysR substrate binding domain AFE_1692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_1694 PF04335 VirB8 protein AFE_1698 PF01464 Transglycosylase SLT domain AFE_1699 PF02534 Type IV secretory system Conjugative DNA transfer AFE_1706 PF03050 Transposase IS66 family AFE_1706 PF13007 Transposase C of IS166 homeodomain AFE_1706 PF13817 IS66 C-terminal element AFE_1706 PF13005 zinc-finger binding domain of transposase IS66 AFE_1707 PF00563 EAL domain AFE_1707 PF00990 Diguanylate cyclase, GGDEF domain AFE_1707 PF03707 Bacterial signalling protein N terminal repeat AFE_1707 PF13188 PAS domain AFE_1712 PF03707 Bacterial signalling protein N terminal repeat AFE_1712 PF00563 EAL domain AFE_1712 PF00990 Diguanylate cyclase, GGDEF domain AFE_1719 PF02195 ParB-like nuclease domain AFE_1719 PF17762 HTH domain found in ParB protein AFE_1720 PF13614 AAA domain AFE_1723 PF00248 Aldo/keto reductase family AFE_1725 PF03707 Bacterial signalling protein N terminal repeat AFE_1725 PF00990 Diguanylate cyclase, GGDEF domain AFE_1725 PF00563 EAL domain AFE_1734 PF01381 Helix-turn-helix AFE_1738 PF01131 DNA topoisomerase AFE_1738 PF01751 Toprim domain AFE_1740 PF13396 Phospholipase_D-nuclease N-terminal AFE_1740 PF13091 PLD-like domain AFE_1741 PF02954 Bacterial regulatory protein, Fis family AFE_1741 PF01590 GAF domain AFE_1741 PF00158 Sigma-54 interaction domain AFE_1742 PF00171 Aldehyde dehydrogenase family AFE_1750 PF00717 Peptidase S24-like AFE_1751 PF13438 Domain of unknown function (DUF4113) AFE_1751 PF11798 IMS family HHH motif AFE_1751 PF00817 impB/mucB/samB family AFE_1751 PF11799 impB/mucB/samB family C-terminal domain AFE_1753 PF02705 K+ potassium transporter AFE_1754 PF01381 Helix-turn-helix AFE_1760 PF05188 MutS domain II AFE_1760 PF05192 MutS domain III AFE_1760 PF05190 MutS family domain IV AFE_1760 PF00488 MutS domain V AFE_1760 PF01624 MutS domain I AFE_1762 PF04461 Protein of unknown function (DUF520) AFE_1763 PF00534 Glycosyl transferases group 1 AFE_1763 PF13439 Glycosyltransferase Family 4 AFE_1764 PF01027 Inhibitor of apoptosis-promoting Bax1 AFE_1769 PF02913 FAD linked oxidases, C-terminal domain AFE_1769 PF01565 FAD binding domain AFE_1770 PF02569 Pantoate-beta-alanine ligase AFE_1771 PF02548 Ketopantoate hydroxymethyltransferase AFE_1772 PF01712 Deoxynucleoside kinase AFE_1774 PF01966 HD domain AFE_1774 PF12627 Probable RNA and SrmB- binding site of polymerase A AFE_1774 PF01743 Poly A polymerase head domain AFE_1775 PF12627 Probable RNA and SrmB- binding site of polymerase A AFE_1775 PF12626 Polymerase A arginine-rich C-terminus AFE_1775 PF01743 Poly A polymerase head domain AFE_1776 PF00535 Glycosyl transferase family 2 AFE_1777 PF00478 IMP dehydrogenase / GMP reductase domain AFE_1777 PF00571 CBS domain AFE_1778 PF00117 Glutamine amidotransferase class-I AFE_1778 PF02540 NAD synthase AFE_1778 PF00958 GMP synthase C terminal domain AFE_1780 PF01850 PIN domain AFE_1782 PF13520 Amino acid permease AFE_1783 PF00696 Amino acid kinase family AFE_1783 PF01472 PUA domain AFE_1784 PF12794 Mechanosensitive ion channel inner membrane domain 1 AFE_1784 PF12795 Mechanosensitive ion channel porin domain AFE_1784 PF00924 Mechanosensitive ion channel AFE_1787 PF01300 Telomere recombination AFE_1788 PF02163 Peptidase family M50 AFE_1789 PF00579 tRNA synthetases class I (W and Y) AFE_1790 PF02616 Segregation and condensation protein ScpA AFE_1791 PF04079 Segregation and condensation complex subunit ScpB AFE_1792 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_1793 PF01479 S4 domain AFE_1793 PF00849 RNA pseudouridylate synthase AFE_1797 PF07690 Major Facilitator Superfamily AFE_1799 PF00343 Carbohydrate phosphorylase AFE_1799 PF11897 Protein of unknown function (DUF3417) AFE_1800 PF00113 Enolase, C-terminal TIM barrel domain AFE_1800 PF03952 Enolase, N-terminal domain AFE_1801 PF00391 PEP-utilising enzyme, mobile domain AFE_1801 PF00224 Pyruvate kinase, barrel domain AFE_1801 PF02887 Pyruvate kinase, alpha/beta domain AFE_1803 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_1803 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFE_1807 PF00294 pfkB family carbohydrate kinase AFE_1808 PF01515 Phosphate acetyl/butaryl transferase AFE_1809 PF00083 Sugar (and other) transporter AFE_1810 PF00871 Acetokinase family AFE_1811 PF00364 Biotin-requiring enzyme AFE_1811 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFE_1811 PF02817 e3 binding domain AFE_1812 PF02780 Transketolase, C-terminal domain AFE_1812 PF02779 Transketolase, pyrimidine binding domain AFE_1813 PF00676 Dehydrogenase E1 component AFE_1815 PF01676 Metalloenzyme superfamily AFE_1815 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AFE_1816 PF00391 PEP-utilising enzyme, mobile domain AFE_1816 PF02896 PEP-utilising enzyme, TIM barrel domain AFE_1816 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFE_1818 PF05036 Sporulation related domain AFE_1818 PF03330 Lytic transglycolase AFE_1819 PF07687 Peptidase dimerisation domain AFE_1819 PF01546 Peptidase family M20/M25/M40 AFE_1820 PF14602 Hexapeptide repeat of succinyl-transferase AFE_1820 PF00132 Bacterial transferase hexapeptide (six repeats) AFE_1820 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AFE_1821 PF00155 Aminotransferase class I and II AFE_1823 PF13419 Haloacid dehalogenase-like hydrolase AFE_1826 PF01979 Amidohydrolase family AFE_1828 PF00877 NlpC/P60 family AFE_1828 PF01476 LysM domain AFE_1833 PF00140 Sigma-70 factor, region 1.2 AFE_1833 PF04542 Sigma-70 region 2 AFE_1833 PF04545 Sigma-70, region 4 AFE_1833 PF04539 Sigma-70 region 3 AFE_1843 PF02779 Transketolase, pyrimidine binding domain AFE_1843 PF02780 Transketolase, C-terminal domain AFE_1843 PF00456 Transketolase, thiamine diphosphate binding domain AFE_1844 PF11953 Domain of unknown function (DUF3470) AFE_1844 PF00037 4Fe-4S binding domain AFE_1847 PF03595 Voltage-dependent anion channel AFE_1848 PF00730 HhH-GPD superfamily base excision DNA repair protein AFE_1848 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AFE_1851 PF00535 Glycosyl transferase family 2 AFE_1856 PF05199 GMC oxidoreductase AFE_1856 PF00732 GMC oxidoreductase AFE_1861 PF01329 Pterin 4 alpha carbinolamine dehydratase AFE_1868 PF00717 Peptidase S24-like AFE_1868 PF01726 LexA DNA binding domain AFE_1871 PF14579 Helix-hairpin-helix motif AFE_1871 PF02811 PHP domain AFE_1871 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFE_1871 PF01336 OB-fold nucleic acid binding domain AFE_1871 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFE_1873 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AFE_1873 PF11940 Domain of unknown function (DUF3458) Ig-like fold AFE_1873 PF01433 Peptidase family M1 domain AFE_1876 PF13090 Polyphosphate kinase C-terminal domain 2 AFE_1876 PF17941 Polyphosphate kinase C-terminal domain 1 AFE_1876 PF02503 Polyphosphate kinase middle domain AFE_1876 PF13089 Polyphosphate kinase N-terminal domain AFE_1877 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFE_1877 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFE_1878 PF00873 AcrB/AcrD/AcrF family AFE_1879 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_1880 PF02321 Outer membrane efflux protein AFE_1882 PF02545 Maf-like protein AFE_1883 PF00311 Phosphoenolpyruvate carboxylase AFE_1884 PF17209 Hfq protein AFE_1885 PF13167 GTP-binding GTPase N-terminal AFE_1885 PF16360 GTP-binding GTPase Middle Region AFE_1885 PF01926 50S ribosome-binding GTPase AFE_1886 PF01145 SPFH domain / Band 7 family AFE_1887 PF01145 SPFH domain / Band 7 family AFE_1888 PF13393 Histidyl-tRNA synthetase AFE_1889 PF00709 Adenylosuccinate synthetase AFE_1891 PF00773 RNB domain AFE_1891 PF17876 Cold shock domain AFE_1891 PF08461 Ribonuclease R winged-helix domain AFE_1891 PF08206 Ribonuclease B OB domain AFE_1892 PF03976 Polyphosphate kinase 2 (PPK2) AFE_1893 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_1893 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFE_1894 PF02464 Competence-damaged protein AFE_1894 PF00994 Probable molybdopterin binding domain AFE_1895 PF01548 Transposase AFE_1895 PF02371 Transposase IS116/IS110/IS902 family AFE_1896 PF00551 Formyl transferase AFE_1897 PF02769 AIR synthase related protein, C-terminal domain AFE_1897 PF00586 AIR synthase related protein, N-terminal domain AFE_1898 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFE_1898 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFE_1900 PF01066 CDP-alcohol phosphatidyltransferase AFE_1901 PF00308 Bacterial dnaA protein AFE_1901 PF08299 Bacterial dnaA protein helix-turn-helix AFE_1901 PF11638 DnaA N-terminal domain AFE_1902 PF03631 Virulence factor BrkB AFE_1904 PF01783 Ribosomal L32p protein family AFE_1905 PF02504 Fatty acid synthesis protein AFE_1906 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFE_1906 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFE_1907 PF00698 Acyl transferase domain AFE_1909 PF00550 Phosphopantetheine attachment site AFE_1910 PF00109 Beta-ketoacyl synthase, N-terminal domain AFE_1910 PF02801 Beta-ketoacyl synthase, C-terminal domain AFE_1913 PF02223 Thymidylate kinase AFE_1914 PF09115 DNA polymerase III, delta subunit, C terminal AFE_1919 PF12170 DNA polymerase III tau subunit V interacting with alpha AFE_1919 PF12169 DNA polymerase III subunits gamma and tau domain III AFE_1919 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AFE_1920 PF02575 YbaB/EbfC DNA-binding family AFE_1921 PF13662 Toprim domain AFE_1921 PF02132 RecR protein AFE_1922 PF00909 Ammonium Transporter Family AFE_1923 PF03853 YjeF-related protein N-terminus AFE_1923 PF01256 Carbohydrate kinase AFE_1924 PF00202 Aminotransferase class-III AFE_1926 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFE_1927 PF01119 DNA mismatch repair protein, C-terminal domain AFE_1927 PF08676 MutL C terminal dimerisation domain AFE_1929 PF00334 Nucleoside diphosphate kinase AFE_1930 PF04055 Radical SAM superfamily AFE_1932 PF13464 Domain of unknown function (DUF4115) AFE_1933 PF04551 GcpE protein AFE_1934 PF13393 Histidyl-tRNA synthetase AFE_1934 PF03129 Anticodon binding domain AFE_1937 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFE_1937 PF01926 50S ribosome-binding GTPase AFE_1939 PF12849 PBP superfamily domain AFE_1940 PF00528 Binding-protein-dependent transport system inner membrane component AFE_1941 PF00528 Binding-protein-dependent transport system inner membrane component AFE_1945 PF01925 Sulfite exporter TauE/SafE AFE_1947 PF00873 AcrB/AcrD/AcrF family AFE_1948 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_1951 PF01161 Phosphatidylethanolamine-binding protein AFE_1953 PF00037 4Fe-4S binding domain AFE_1953 PF11953 Domain of unknown function (DUF3470) AFE_1956 PF01266 FAD dependent oxidoreductase AFE_1958 PF07244 Surface antigen variable number repeat AFE_1958 PF01103 Surface antigen AFE_1958 PF17243 POTRA domain TamA domain 1 AFE_1962 PF00034 Cytochrome c AFE_1966 PF01370 NAD dependent epimerase/dehydratase family AFE_1967 PF01370 NAD dependent epimerase/dehydratase family AFE_1968 PF00999 Sodium/hydrogen exchanger family AFE_1968 PF02080 TrkA-C domain AFE_1968 PF02254 TrkA-N domain AFE_1969 PF00501 AMP-binding enzyme AFE_1969 PF13193 AMP-binding enzyme C-terminal domain AFE_1969 PF16177 Acetyl-coenzyme A synthetase N-terminus AFE_1970 PF07724 AAA domain (Cdc48 subfamily) AFE_1970 PF17871 AAA lid domain AFE_1970 PF00004 ATPase family associated with various cellular activities (AAA) AFE_1970 PF10431 C-terminal, D2-small domain, of ClpB protein AFE_1970 PF02861 Clp amino terminal domain, pathogenicity island component AFE_1972 PF01264 Chorismate synthase AFE_1973 PF02649 Type I GTP cyclohydrolase folE2 AFE_1974 PF02779 Transketolase, pyrimidine binding domain AFE_1974 PF02780 Transketolase, C-terminal domain AFE_1974 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFE_1975 PF00348 Polyprenyl synthetase AFE_1976 PF02609 Exonuclease VII small subunit AFE_1977 PF07690 Major Facilitator Superfamily AFE_1979 PF00085 Thioredoxin AFE_1980 PF13742 OB-fold nucleic acid binding domain AFE_1980 PF02601 Exonuclease VII, large subunit AFE_1981 PF01011 PQQ enzyme repeat AFE_1981 PF13360 PQQ-like domain AFE_1981 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFE_1986 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFE_1987 PF00149 Calcineurin-like phosphoesterase AFE_1988 PF00690 Cation transporter/ATPase, N-terminus AFE_1988 PF00689 Cation transporting ATPase, C-terminus AFE_1989 PF08502 LeuA allosteric (dimerisation) domain AFE_1989 PF00682 HMGL-like AFE_1990 PF01037 Lrp/AsnC ligand binding domain AFE_1993 PF03466 LysR substrate binding domain AFE_1993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_1994 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFE_1997 PF03472 Autoinducer binding domain AFE_1997 PF00196 Bacterial regulatory proteins, luxR family AFE_1999 PF00765 Autoinducer synthase AFE_2002 PF01878 EVE domain AFE_2005 PF01965 DJ-1/PfpI family AFE_2012 PF17074 Darcynin, domain of unknown function AFE_2013 PF01047 MarR family AFE_2014 PF02627 Carboxymuconolactone decarboxylase family AFE_2015 PF00583 Acetyltransferase (GNAT) family AFE_2021 PF00403 Heavy-metal-associated domain AFE_2022 PF00155 Aminotransferase class I and II AFE_2023 PF01370 NAD dependent epimerase/dehydratase family AFE_2023 PF02222 ATP-grasp domain AFE_2024 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFE_2024 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFE_2025 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFE_2025 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFE_2026 PF01022 Bacterial regulatory protein, arsR family AFE_2027 PF01207 Dihydrouridine synthase (Dus) AFE_2028 PF00521 DNA gyrase/topoisomerase IV, subunit A AFE_2029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_2029 PF00986 DNA gyrase B subunit, carboxyl terminus AFE_2029 PF01751 Toprim domain AFE_2029 PF00204 DNA gyrase B AFE_2031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_2031 PF08521 Two-component sensor kinase N-terminal AFE_2031 PF00512 His Kinase A (phospho-acceptor) domain AFE_2032 PF00072 Response regulator receiver domain AFE_2032 PF00486 Transcriptional regulatory protein, C terminal AFE_2035 PF00873 AcrB/AcrD/AcrF family AFE_2043 PF00873 AcrB/AcrD/AcrF family AFE_2053 PF09364 XFP N-terminal domain AFE_2053 PF09363 XFP C-terminal domain AFE_2053 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AFE_2056 PF02355 Protein export membrane protein AFE_2056 PF07549 SecD/SecF GG Motif AFE_2057 PF02355 Protein export membrane protein AFE_2057 PF07549 SecD/SecF GG Motif AFE_2057 PF13721 SecD export protein N-terminal TM region AFE_2058 PF02699 Preprotein translocase subunit AFE_2059 PF01702 Queuine tRNA-ribosyltransferase AFE_2060 PF02547 Queuosine biosynthesis protein AFE_2061 PF01595 Cyclin M transmembrane N-terminal domain AFE_2061 PF00571 CBS domain AFE_2061 PF03471 Transporter associated domain AFE_2063 PF01053 Cys/Met metabolism PLP-dependent enzyme AFE_2064 PF13537 Glutamine amidotransferase domain AFE_2064 PF00156 Phosphoribosyl transferase domain AFE_2066 PF02875 Mur ligase family, glutamate ligase domain AFE_2066 PF08245 Mur ligase middle domain AFE_2067 PF17848 Acetyl-coA carboxylase zinc finger domain AFE_2067 PF01039 Carboxyl transferase domain AFE_2068 PF00290 Tryptophan synthase alpha chain AFE_2069 PF00291 Pyridoxal-phosphate dependent enzyme AFE_2070 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFE_2071 PF01416 tRNA pseudouridine synthase AFE_2074 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFE_2074 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFE_2075 PF00180 Isocitrate/isopropylmalate dehydrogenase AFE_2076 PF12804 MobA-like NTP transferase domain AFE_2077 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AFE_2078 PF00994 Probable molybdopterin binding domain AFE_2078 PF03453 MoeA N-terminal region (domain I and II) AFE_2078 PF03454 MoeA C-terminal region (domain IV) AFE_2079 PF13091 PLD-like domain AFE_2080 PF01343 Peptidase family S49 AFE_2081 PF00128 Alpha amylase, catalytic domain AFE_2082 PF11941 Domain of unknown function (DUF3459) AFE_2082 PF00128 Alpha amylase, catalytic domain AFE_2083 PF00534 Glycosyl transferases group 1 AFE_2085 PF00156 Phosphoribosyl transferase domain AFE_2085 PF01738 Dienelactone hydrolase family AFE_2086 PF00011 Hsp20/alpha crystallin family AFE_2088 PF08240 Alcohol dehydrogenase GroES-like domain AFE_2090 PF01435 Peptidase family M48 AFE_2091 PF07690 Major Facilitator Superfamily AFE_2103 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_2104 PF00873 AcrB/AcrD/AcrF family AFE_2105 PF00005 ABC transporter AFE_2110 PF02934 GatB/GatE catalytic domain AFE_2110 PF02637 GatB domain AFE_2111 PF01425 Amidase AFE_2112 PF02686 Glu-tRNAGln amidotransferase C subunit AFE_2115 PF06463 Molybdenum Cofactor Synthesis C AFE_2115 PF04055 Radical SAM superfamily AFE_2119 PF04794 YdjC-like protein AFE_2122 PF01370 NAD dependent epimerase/dehydratase family AFE_2123 PF01048 Phosphorylase superfamily AFE_2124 PF13243 Squalene-hopene cyclase C-terminal domain AFE_2124 PF13249 Squalene-hopene cyclase N-terminal domain AFE_2126 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFE_2126 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFE_2127 PF02556 Preprotein translocase subunit SecB AFE_2129 PF01850 PIN domain AFE_2131 PF00171 Aldehyde dehydrogenase family AFE_2132 PF04073 Aminoacyl-tRNA editing domain AFE_2132 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFE_2132 PF03129 Anticodon binding domain AFE_2133 PF00582 Universal stress protein family AFE_2139 PF13277 YmdB-like protein AFE_2140 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFE_2144 PF00905 Penicillin binding protein transpeptidase domain AFE_2144 PF03717 Penicillin-binding Protein dimerisation domain AFE_2145 PF01386 Ribosomal L25p family AFE_2145 PF14693 Ribosomal protein TL5, C-terminal domain AFE_2146 PF01195 Peptidyl-tRNA hydrolase AFE_2147 PF01926 50S ribosome-binding GTPase AFE_2147 PF06071 Protein of unknown function (DUF933) AFE_2148 PF07883 Cupin domain AFE_2148 PF01381 Helix-turn-helix AFE_2149 PF00361 Proton-conducting membrane transporter AFE_2150 PF00146 NADH dehydrogenase AFE_2152 PF00361 Proton-conducting membrane transporter AFE_2153 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFE_2153 PF00374 Nickel-dependent hydrogenase AFE_2153 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFE_2154 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFE_2155 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFE_2155 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFE_2156 PF08406 CbbQ/NirQ/NorQ C-terminal AFE_2156 PF07728 AAA domain (dynein-related subfamily) AFE_2157 PF00092 von Willebrand factor type A domain AFE_2158 PF03466 LysR substrate binding domain AFE_2158 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_2159 PF03831 PhnA domain AFE_2159 PF08274 PhnA Zinc-Ribbon AFE_2167 PF00005 ABC transporter AFE_2167 PF03412 Peptidase C39 family AFE_2167 PF00664 ABC transporter transmembrane region AFE_2170 PF14883 Hypothetical glycosyl hydrolase family 13 AFE_2170 PF01522 Polysaccharide deacetylase AFE_2172 PF00144 Beta-lactamase AFE_2173 PF00293 NUDIX domain AFE_2174 PF00293 NUDIX domain AFE_2175 PF00849 RNA pseudouridylate synthase AFE_2175 PF01479 S4 domain AFE_2176 PF04371 Porphyromonas-type peptidyl-arginine deiminase AFE_2177 PF00384 Molybdopterin oxidoreductase AFE_2177 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFE_2177 PF01568 Molydopterin dinucleotide binding domain AFE_2178 PF13247 4Fe-4S dicluster domain AFE_2183 PF00582 Universal stress protein family AFE_2184 PF07690 Major Facilitator Superfamily AFE_2186 PF01790 Prolipoprotein diacylglyceryl transferase AFE_2187 PF13361 UvrD-like helicase C-terminal domain AFE_2187 PF00580 UvrD/REP helicase N-terminal domain AFE_2188 PF01649 Ribosomal protein S20 AFE_2189 PF00005 ABC transporter AFE_2189 PF08402 TOBE domain AFE_2190 PF00528 Binding-protein-dependent transport system inner membrane component AFE_2193 PF00149 Calcineurin-like phosphoesterase AFE_2194 PF09382 RQC domain AFE_2194 PF00570 HRDC domain AFE_2194 PF16124 RecQ zinc-binding AFE_2194 PF00271 Helicase conserved C-terminal domain AFE_2194 PF00270 DEAD/DEAH box helicase AFE_2195 PF01491 Frataxin-like domain AFE_2200 PF03739 Lipopolysaccharide export system permease LptF/LptG AFE_2201 PF02789 Cytosol aminopeptidase family, N-terminal domain AFE_2201 PF00883 Cytosol aminopeptidase family, catalytic domain AFE_2204 PF00133 tRNA synthetases class I (I, L, M and V) AFE_2204 PF10458 Valyl tRNA synthetase tRNA binding arm AFE_2204 PF08264 Anticodon-binding domain of tRNA AFE_2205 PF06965 Na+/H+ antiporter 1 AFE_2206 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFE_2206 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFE_2209 PF16925 Tetracyclin repressor-like, C-terminal domain AFE_2209 PF00440 Bacterial regulatory proteins, tetR family AFE_2210 PF01738 Dienelactone hydrolase family AFE_2211 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFE_2214 PF05656 Protein of unknown function (DUF805) AFE_2218 PF13419 Haloacid dehalogenase-like hydrolase AFE_2219 PF00849 RNA pseudouridylate synthase AFE_2219 PF01479 S4 domain AFE_2220 PF00575 S1 RNA binding domain AFE_2220 PF10150 Ribonuclease E/G family AFE_2220 PF12111 Polyribonucleotide phosphorylase C terminal AFE_2221 PF09190 DALR domain AFE_2221 PF01406 tRNA synthetases class I (C) catalytic domain AFE_2222 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFE_2223 PF17092 Penicillin-binding protein OB-like domain AFE_2223 PF00905 Penicillin binding protein transpeptidase domain AFE_2223 PF00912 Transglycosylase AFE_2224 PF00723 Glycosyl hydrolases family 15 AFE_2224 PF09137 Glucodextranase, domain N AFE_2228 PF00072 Response regulator receiver domain AFE_2228 PF00486 Transcriptional regulatory protein, C terminal AFE_2229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_2229 PF13493 Domain of unknown function (DUF4118) AFE_2229 PF13492 GAF domain AFE_2229 PF02702 Osmosensitive K+ channel His kinase sensor domain AFE_2229 PF00512 His Kinase A (phospho-acceptor) domain AFE_2232 PF03814 Potassium-transporting ATPase A subunit AFE_2234 PF02669 K+-transporting ATPase, c chain AFE_2238 PF00696 Amino acid kinase family AFE_2238 PF01472 PUA domain AFE_2240 PF00543 Nitrogen regulatory protein P-II AFE_2245 PF00999 Sodium/hydrogen exchanger family AFE_2253 PF01835 MG2 domain AFE_2253 PF17962 Bacterial macroglobulin domain 6 AFE_2253 PF07703 Alpha-2-macroglobulin bait region domain AFE_2253 PF00207 Alpha-2-macroglobulin family AFE_2253 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AFE_2253 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AFE_2253 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AFE_2254 PF00912 Transglycosylase AFE_2254 PF00905 Penicillin binding protein transpeptidase domain AFE_2254 PF06832 Penicillin-Binding Protein C-terminus Family AFE_2258 PF01925 Sulfite exporter TauE/SafE AFE_2260 PF01808 AICARFT/IMPCHase bienzyme AFE_2260 PF02142 MGS-like domain AFE_2261 PF02844 Phosphoribosylglycinamide synthetase, N domain AFE_2261 PF02843 Phosphoribosylglycinamide synthetase, C domain AFE_2261 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFE_2262 PF01300 Telomere recombination AFE_2263 PF01218 Coproporphyrinogen III oxidase AFE_2264 PF01180 Dihydroorotate dehydrogenase AFE_2267 PF04185 Phosphoesterase family AFE_2269 PF02472 Biopolymer transport protein ExbD/TolR AFE_2270 PF01618 MotA/TolQ/ExbB proton channel family AFE_2273 PF01618 MotA/TolQ/ExbB proton channel family AFE_2277 PF00083 Sugar (and other) transporter AFE_2278 PF06754 Phosphonate metabolism protein PhnG AFE_2279 PF05845 Bacterial phosphonate metabolism protein (PhnH) AFE_2280 PF05861 Bacterial phosphonate metabolism protein (PhnI) AFE_2281 PF06007 Phosphonate metabolism protein PhnJ AFE_2282 PF00005 ABC transporter AFE_2283 PF00005 ABC transporter AFE_2284 PF07969 Amidohydrolase family AFE_2287 PF07702 UTRA domain AFE_2287 PF00392 Bacterial regulatory proteins, gntR family AFE_2297 PF05506 Domain of unknown function (DUF756) AFE_2297 PF04185 Phosphoesterase family AFE_2299 PF01618 MotA/TolQ/ExbB proton channel family AFE_2302 PF00593 TonB dependent receptor AFE_2302 PF07715 TonB-dependent Receptor Plug Domain AFE_2312 PF00083 Sugar (and other) transporter AFE_2314 PF00300 Histidine phosphatase superfamily (branch 1) AFE_2318 PF00512 His Kinase A (phospho-acceptor) domain AFE_2318 PF00672 HAMP domain AFE_2318 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_2319 PF00486 Transcriptional regulatory protein, C terminal AFE_2319 PF00072 Response regulator receiver domain AFE_2320 PF00929 Exonuclease AFE_2321 PF00296 Luciferase-like monooxygenase AFE_2324 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFE_2324 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFE_2324 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFE_2324 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFE_2327 PF00690 Cation transporter/ATPase, N-terminus AFE_2327 PF00689 Cation transporting ATPase, C-terminus AFE_2328 PF01292 Prokaryotic cytochrome b561 AFE_2332 PF03466 LysR substrate binding domain AFE_2332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_2333 PF07690 Major Facilitator Superfamily AFE_2336 PF04546 Sigma-70, non-essential region AFE_2336 PF00140 Sigma-70 factor, region 1.2 AFE_2336 PF04542 Sigma-70 region 2 AFE_2336 PF04539 Sigma-70 region 3 AFE_2336 PF04545 Sigma-70, region 4 AFE_2336 PF03979 Sigma-70 factor, region 1.1 AFE_2337 PF08278 DNA primase DnaG DnaB-binding AFE_2337 PF01807 CHC2 zinc finger AFE_2337 PF08275 DNA primase catalytic core, N-terminal domain AFE_2337 PF10410 DnaB-helicase binding domain of primase AFE_2338 PF01713 Smr domain AFE_2338 PF00488 MutS domain V AFE_2340 PF01165 Ribosomal protein S21 AFE_2341 PF01725 Ham1 family AFE_2342 PF04539 Sigma-70 region 3 AFE_2342 PF04542 Sigma-70 region 2 AFE_2342 PF00140 Sigma-70 factor, region 1.2 AFE_2342 PF04545 Sigma-70, region 4 AFE_2343 PF03725 3' exoribonuclease family, domain 2 AFE_2343 PF01138 3' exoribonuclease family, domain 1 AFE_2346 PF04055 Radical SAM superfamily AFE_2346 PF06969 HemN C-terminal domain AFE_2348 PF01479 S4 domain AFE_2348 PF00849 RNA pseudouridylate synthase AFE_2349 PF07690 Major Facilitator Superfamily AFE_2350 PF07943 Penicillin-binding protein 5, C-terminal domain AFE_2350 PF00768 D-alanyl-D-alanine carboxypeptidase AFE_2354 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AFE_2354 PF02769 AIR synthase related protein, C-terminal domain AFE_2354 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFE_2355 PF01259 SAICAR synthetase AFE_2356 PF10397 Adenylosuccinate lyase C-terminus AFE_2356 PF00206 Lyase AFE_2358 PF00701 Dihydrodipicolinate synthetase family AFE_2360 PF03006 Haemolysin-III related AFE_2361 PF01520 N-acetylmuramoyl-L-alanine amidase AFE_2361 PF11741 AMIN domain AFE_2362 PF00085 Thioredoxin AFE_2363 PF00462 Glutaredoxin AFE_2364 PF00581 Rhodanese-like domain AFE_2366 PF00873 AcrB/AcrD/AcrF family AFE_2367 PF13533 Biotin-lipoyl like AFE_2369 PF01022 Bacterial regulatory protein, arsR family AFE_2372 PF02384 N-6 DNA Methylase AFE_2372 PF12161 HsdM N-terminal domain AFE_2381 PF18766 SWI2/SNF2 ATPase AFE_2381 PF12008 Type I restriction and modification enzyme - subunit R C terminal AFE_2381 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFE_2383 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AFE_2386 PF00899 ThiF family AFE_2388 PF01494 FAD binding domain AFE_2389 PF01494 FAD binding domain AFE_2390 PF04380 Membrane fusogenic activity AFE_2398 PF02899 Phage integrase, N-terminal SAM-like domain AFE_2398 PF00589 Phage integrase family AFE_2399 PF00589 Phage integrase family AFE_2399 PF02899 Phage integrase, N-terminal SAM-like domain AFE_2410 PF13673 Acetyltransferase (GNAT) domain AFE_2411 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFE_2412 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFE_2412 PF00391 PEP-utilising enzyme, mobile domain AFE_2413 PF01695 IstB-like ATP binding protein AFE_2420 PF01545 Cation efflux family AFE_2421 PF13411 MerR HTH family regulatory protein AFE_2422 PF08241 Methyltransferase domain AFE_2423 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFE_2423 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AFE_2431 PF00873 AcrB/AcrD/AcrF family AFE_2443 PF13006 Insertion element 4 transposase N-terminal AFE_2443 PF01609 Transposase DDE domain AFE_2448 PF00403 Heavy-metal-associated domain AFE_2450 PF00034 Cytochrome c AFE_2454 PF00999 Sodium/hydrogen exchanger family AFE_2457 PF13520 Amino acid permease AFE_2462 PF00543 Nitrogen regulatory protein P-II AFE_2464 PF00696 Amino acid kinase family AFE_2464 PF01472 PUA domain AFE_2466 PF02080 TrkA-C domain AFE_2466 PF18030 RimK PreATP-grasp domain AFE_2466 PF08443 RimK-like ATP-grasp domain AFE_2467 PF00583 Acetyltransferase (GNAT) family AFE_2470 PF13005 zinc-finger binding domain of transposase IS66 AFE_2470 PF13007 Transposase C of IS166 homeodomain AFE_2470 PF13817 IS66 C-terminal element AFE_2470 PF03050 Transposase IS66 family AFE_2473 PF02669 K+-transporting ATPase, c chain AFE_2475 PF03814 Potassium-transporting ATPase A subunit AFE_2477 PF03814 Potassium-transporting ATPase A subunit AFE_2480 PF03203 MerC mercury resistance protein AFE_2481 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFE_2481 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_2481 PF00403 Heavy-metal-associated domain AFE_2482 PF00723 Glycosyl hydrolases family 15 AFE_2482 PF09137 Glucodextranase, domain N AFE_2485 PF00563 EAL domain AFE_2485 PF11809 Domain of unknown function (DUF3330) AFE_2505 PF00665 Integrase core domain AFE_2509 PF13411 MerR HTH family regulatory protein AFE_2514 PF00009 Elongation factor Tu GTP binding domain AFE_2514 PF03144 Elongation factor Tu domain 2 AFE_2514 PF16658 Class II release factor RF3, C-terminal domain AFE_2516 PF00814 Glycoprotease family AFE_2517 PF13307 Helicase C-terminal domain AFE_2517 PF04851 Type III restriction enzyme, res subunit AFE_2520 PF00877 NlpC/P60 family AFE_2524 PF02421 Ferrous iron transport protein B AFE_2524 PF07664 Ferrous iron transport protein B C terminus AFE_2524 PF17910 FeoB cytosolic helical domain AFE_2524 PF07670 Nucleoside recognition AFE_2526 PF00795 Carbon-nitrogen hydrolase AFE_2527 PF09335 SNARE associated Golgi protein AFE_2528 PF07722 Peptidase C26 AFE_2534 PF00850 Histone deacetylase domain AFE_2536 PF08406 CbbQ/NirQ/NorQ C-terminal AFE_2536 PF07728 AAA domain (dynein-related subfamily) AFE_2545 PF03099 Biotin/lipoate A/B protein ligase family AFE_2547 PF01597 Glycine cleavage H-protein AFE_2549 PF01597 Glycine cleavage H-protein AFE_2550 PF02754 Cysteine-rich domain AFE_2553 PF01593 Flavin containing amine oxidoreductase AFE_2556 PF13686 DsrE/DsrF/DrsH-like family AFE_2557 PF01206 Sulfurtransferase TusA AFE_2558 PF00581 Rhodanese-like domain AFE_2559 PF04055 Radical SAM superfamily AFE_2559 PF06463 Molybdenum Cofactor Synthesis C AFE_2561 PF01967 MoaC family AFE_2563 PF04085 rod shape-determining protein MreC AFE_2565 PF00905 Penicillin binding protein transpeptidase domain AFE_2565 PF03717 Penicillin-binding Protein dimerisation domain AFE_2566 PF01098 Cell cycle protein AFE_2567 PF07943 Penicillin-binding protein 5, C-terminal domain AFE_2567 PF00768 D-alanyl-D-alanine carboxypeptidase AFE_2569 PF03099 Biotin/lipoate A/B protein ligase family AFE_2570 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AFE_2570 PF04055 Radical SAM superfamily AFE_2580 PF02091 Glycyl-tRNA synthetase alpha subunit AFE_2581 PF02092 Glycyl-tRNA synthetase beta subunit AFE_2583 PF08443 RimK-like ATP-grasp domain AFE_2583 PF18030 RimK PreATP-grasp domain AFE_2588 PF02677 Epoxyqueuosine reductase QueH AFE_2589 PF01510 N-acetylmuramoyl-L-alanine amidase AFE_2594 PF00043 Glutathione S-transferase, C-terminal domain AFE_2594 PF02798 Glutathione S-transferase, N-terminal domain AFE_2595 PF01638 HxlR-like helix-turn-helix AFE_2596 PF08502 LeuA allosteric (dimerisation) domain AFE_2596 PF00682 HMGL-like AFE_2597 PF02954 Bacterial regulatory protein, Fis family AFE_2597 PF01590 GAF domain AFE_2597 PF00158 Sigma-54 interaction domain AFE_2604 PF00005 ABC transporter AFE_2604 PF13732 Domain of unknown function (DUF4162) AFE_2608 PF00216 Bacterial DNA-binding protein AFE_2609 PF03484 tRNA synthetase B5 domain AFE_2609 PF03147 Ferredoxin-fold anticodon binding domain AFE_2609 PF01588 Putative tRNA binding domain AFE_2609 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFE_2609 PF03483 B3/4 domain AFE_2610 PF01409 tRNA synthetases class II core domain (F) AFE_2610 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFE_2611 PF00453 Ribosomal protein L20 AFE_2612 PF01632 Ribosomal protein L35 AFE_2613 PF00707 Translation initiation factor IF-3, C-terminal domain AFE_2613 PF05198 Translation initiation factor IF-3, N-terminal domain AFE_2614 PF03129 Anticodon binding domain AFE_2614 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFE_2614 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFE_2614 PF02824 TGS domain AFE_2617 PF00361 Proton-conducting membrane transporter AFE_2618 PF00361 Proton-conducting membrane transporter AFE_2618 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AFE_2619 PF00361 Proton-conducting membrane transporter AFE_2619 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFE_2620 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFE_2621 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFE_2622 PF12838 4Fe-4S dicluster domain AFE_2623 PF00146 NADH dehydrogenase AFE_2624 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AFE_2624 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFE_2624 PF00384 Molybdopterin oxidoreductase AFE_2625 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFE_2625 PF10531 SLBB domain AFE_2625 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFE_2627 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFE_2628 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFE_2629 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFE_2630 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFE_2632 PF03840 Preprotein translocase SecG subunit AFE_2633 PF00121 Triosephosphate isomerase AFE_2634 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFE_2634 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFE_2634 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFE_2634 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFE_2635 PF00809 Pterin binding enzyme AFE_2636 PF06480 FtsH Extracellular AFE_2636 PF00004 ATPase family associated with various cellular activities (AAA) AFE_2636 PF17862 AAA+ lid domain AFE_2636 PF01434 Peptidase family M41 AFE_2637 PF01523 Putative modulator of DNA gyrase AFE_2638 PF02867 Ribonucleotide reductase, barrel domain AFE_2638 PF00317 Ribonucleotide reductase, all-alpha domain AFE_2638 PF03477 ATP cone domain AFE_2639 PF00268 Ribonucleotide reductase, small chain AFE_2642 PF07690 Major Facilitator Superfamily AFE_2651 PF13115 YtkA-like AFE_2651 PF05425 Copper resistance protein D AFE_2651 PF04234 CopC domain AFE_2654 PF11799 impB/mucB/samB family C-terminal domain AFE_2654 PF00817 impB/mucB/samB family AFE_2655 PF01850 PIN domain AFE_2660 PF00692 dUTPase AFE_2661 PF10609 NUBPL iron-transfer P-loop NTPase AFE_2663 PF01113 Dihydrodipicolinate reductase, N-terminus AFE_2663 PF05173 Dihydrodipicolinate reductase, C-terminus AFE_2664 PF00226 DnaJ domain AFE_2664 PF00684 DnaJ central domain AFE_2664 PF01556 DnaJ C terminal domain AFE_2665 PF00012 Hsp70 protein AFE_2666 PF01025 GrpE AFE_2667 PF01628 HrcA protein C terminal domain AFE_2669 PF00471 Ribosomal protein L33 AFE_2670 PF00830 Ribosomal L28 family AFE_2671 PF00793 DAHP synthetase I family AFE_2671 PF18152 DAHP synthase ferredoxin-like domain AFE_2672 PF09334 tRNA synthetases class I (M) AFE_2672 PF01588 Putative tRNA binding domain AFE_2673 PF10415 Fumarase C C-terminus AFE_2673 PF00206 Lyase AFE_2674 PF08439 Oligopeptidase F AFE_2674 PF01432 Peptidase family M3 AFE_2678 PF08323 Starch synthase catalytic domain AFE_2678 PF00534 Glycosyl transferases group 1 AFE_2679 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFE_2679 PF00753 Metallo-beta-lactamase superfamily AFE_2679 PF10996 Beta-Casp domain AFE_2682 PF10576 Iron-sulfur binding domain of endonuclease III AFE_2682 PF00730 HhH-GPD superfamily base excision DNA repair protein AFE_2682 PF00633 Helix-hairpin-helix motif AFE_2684 PF13018 Extended Signal Peptide of Type V secretion system AFE_2684 PF05658 Head domain of trimeric autotransporter adhesin AFE_2684 PF05662 Coiled stalk of trimeric autotransporter adhesin AFE_2684 PF03895 YadA-like membrane anchor domain AFE_2685 PF00691 OmpA family AFE_2685 PF04972 BON domain AFE_2692 PF13533 Biotin-lipoyl like AFE_2693 PF00664 ABC transporter transmembrane region AFE_2693 PF00005 ABC transporter AFE_2693 PF03412 Peptidase C39 family AFE_2696 PF00158 Sigma-54 interaction domain AFE_2696 PF00072 Response regulator receiver domain AFE_2696 PF02954 Bacterial regulatory protein, Fis family AFE_2702 PF00437 Type II/IV secretion system protein AFE_2704 PF13629 Pilus formation protein N terminal region AFE_2704 PF04972 BON domain AFE_2704 PF00263 Bacterial type II and III secretion system protein AFE_2716 PF13181 Tetratricopeptide repeat AFE_2727 PF00034 Cytochrome c AFE_2729 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AFE_2729 PF00355 Rieske [2Fe-2S] domain AFE_2730 PF00033 Cytochrome b/b6/petB AFE_2730 PF00032 Cytochrome b(C-terminal)/b6/petD AFE_2731 PF02167 Cytochrome C1 family AFE_2736 PF01728 FtsJ-like methyltransferase AFE_2737 PF01985 CRS1 / YhbY (CRM) domain AFE_2738 PF04379 ApaG domain AFE_2739 PF01209 ubiE/COQ5 methyltransferase family AFE_2743 PF01678 Diaminopimelate epimerase AFE_2746 PF02899 Phage integrase, N-terminal SAM-like domain AFE_2746 PF00589 Phage integrase family AFE_2747 PF00227 Proteasome subunit AFE_2748 PF07724 AAA domain (Cdc48 subfamily) AFE_2748 PF00004 ATPase family associated with various cellular activities (AAA) AFE_2750 PF04542 Sigma-70 region 2 AFE_2750 PF00140 Sigma-70 factor, region 1.2 AFE_2750 PF04545 Sigma-70, region 4 AFE_2751 PF18075 FtsX extracellular domain AFE_2752 PF00005 ABC transporter AFE_2753 PF00448 SRP54-type protein, GTPase domain AFE_2753 PF02881 SRP54-type protein, helical bundle domain AFE_2755 PF01467 Cytidylyltransferase-like AFE_2756 PF00350 Dynamin family AFE_2757 PF00037 4Fe-4S binding domain AFE_2758 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFE_2758 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFE_2758 PF06827 Zinc finger found in FPG and IleRS AFE_2759 PF17827 PrmC N-terminal domain AFE_2759 PF05175 Methyltransferase small domain AFE_2760 PF03462 PCRF domain AFE_2760 PF00472 RF-1 domain AFE_2761 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFE_2761 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFE_2761 PF01488 Shikimate / quinate 5-dehydrogenase AFE_2763 PF03550 Outer membrane lipoprotein LolB AFE_2764 PF08544 GHMP kinases C terminal AFE_2764 PF00288 GHMP kinases N terminal domain AFE_2766 PF14572 Phosphoribosyl synthetase-associated domain AFE_2766 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFE_2773 PF02798 Glutathione S-transferase, N-terminal domain AFE_2775 PF01925 Sulfite exporter TauE/SafE AFE_2776 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFE_2776 PF00205 Thiamine pyrophosphate enzyme, central domain AFE_2776 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFE_2788 PF01906 Putative heavy-metal-binding AFE_2790 PF11867 Domain of unknown function (DUF3387) AFE_2790 PF18766 SWI2/SNF2 ATPase AFE_2790 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFE_2791 PF01420 Type I restriction modification DNA specificity domain AFE_2793 PF02384 N-6 DNA Methylase AFE_2798 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFE_2798 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFE_2799 PF12833 Helix-turn-helix domain AFE_2799 PF00730 HhH-GPD superfamily base excision DNA repair protein AFE_2799 PF06029 AlkA N-terminal domain AFE_2799 PF02805 Metal binding domain of Ada AFE_2800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFE_2802 PF00893 Small Multidrug Resistance protein AFE_2803 PF03358 NADPH-dependent FMN reductase AFE_2815 PF05195 Aminopeptidase P, N-terminal domain AFE_2815 PF00557 Metallopeptidase family M24 AFE_2817 PF18073 Rubredoxin metal binding domain AFE_2818 PF01168 Alanine racemase, N-terminal domain AFE_2818 PF00842 Alanine racemase, C-terminal domain AFE_2819 PF03796 DnaB-like helicase C terminal domain AFE_2819 PF00772 DnaB-like helicase N terminal domain AFE_2820 PF03948 Ribosomal protein L9, C-terminal domain AFE_2820 PF01281 Ribosomal protein L9, N-terminal domain AFE_2823 PF01084 Ribosomal protein S18 AFE_2824 PF01250 Ribosomal protein S6 AFE_2825 PF00933 Glycosyl hydrolase family 3 N terminal domain AFE_2826 PF13520 Amino acid permease AFE_2828 PF05958 tRNA (Uracil-5-)-methyltransferase AFE_2828 PF01938 TRAM domain AFE_2832 PF00291 Pyridoxal-phosphate dependent enzyme AFE_2833 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFE_2834 PF01145 SPFH domain / Band 7 family AFE_2836 PF02806 Alpha amylase, C-terminal all-beta domain AFE_2836 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFE_2836 PF00128 Alpha amylase, catalytic domain AFE_2838 PF00483 Nucleotidyl transferase AFE_2840 PF03065 Glycosyl hydrolase family 57 AFE_2840 PF09095 Domain of unknown function (DUF1926) AFE_2840 PF09094 Domain of unknown function (DUF1925) AFE_2841 PF00480 ROK family AFE_2842 PF01177 Asp/Glu/Hydantoin racemase AFE_2843 PF04286 Protein of unknown function (DUF445) AFE_2845 PF00436 Single-strand binding protein family AFE_2847 PF17760 UvrA interaction domain AFE_2847 PF17755 UvrA DNA-binding domain AFE_2848 PF00085 Thioredoxin AFE_2849 PF17820 PDZ domain AFE_2849 PF13180 PDZ domain AFE_2850 PF00589 Phage integrase family AFE_2850 PF02899 Phage integrase, N-terminal SAM-like domain AFE_2852 PF01245 Ribosomal protein L19 AFE_2853 PF01746 tRNA (Guanine-1)-methyltransferase AFE_2854 PF01782 RimM N-terminal domain AFE_2854 PF05239 PRC-barrel domain AFE_2855 PF00886 Ribosomal protein S16 AFE_2856 PF02881 SRP54-type protein, helical bundle domain AFE_2856 PF02978 Signal peptide binding domain AFE_2856 PF00448 SRP54-type protein, GTPase domain AFE_2857 PF03358 NADPH-dependent FMN reductase AFE_2858 PF02040 Arsenical pump membrane protein AFE_2860 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFE_2861 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFE_2862 PF00005 ABC transporter AFE_2869 PF01597 Glycine cleavage H-protein AFE_2875 PF03466 LysR substrate binding domain AFE_2875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFE_2876 PF13686 DsrE/DsrF/DrsH-like family AFE_2880 PF00092 von Willebrand factor type A domain AFE_2882 PF03167 Uracil DNA glycosylase superfamily AFE_2886 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFE_2889 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AFE_2895 PF03717 Penicillin-binding Protein dimerisation domain AFE_2895 PF00905 Penicillin binding protein transpeptidase domain AFE_2899 PF00348 Polyprenyl synthetase AFE_2901 PF00158 Sigma-54 interaction domain AFE_2901 PF02954 Bacterial regulatory protein, Fis family AFE_2901 PF00072 Response regulator receiver domain AFE_2902 PF00989 PAS fold AFE_2902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_2902 PF00512 His Kinase A (phospho-acceptor) domain AFE_2905 PF14403 Circularly permuted ATP-grasp type 2 AFE_2906 PF14403 Circularly permuted ATP-grasp type 2 AFE_2906 PF04168 A predicted alpha-helical domain with a conserved ER motif. AFE_2910 PF06798 PrkA serine protein kinase C-terminal domain AFE_2910 PF08298 PrkA AAA domain AFE_2911 PF00909 Ammonium Transporter Family AFE_2912 PF04285 Protein of unknown function (DUF444) AFE_2913 PF04293 SpoVR like protein AFE_2915 PF00543 Nitrogen regulatory protein P-II AFE_2916 PF00909 Ammonium Transporter Family AFE_2917 PF00117 Glutamine amidotransferase class-I AFE_2917 PF00958 GMP synthase C terminal domain AFE_2921 PF03330 Lytic transglycolase AFE_2921 PF05036 Sporulation related domain AFE_2922 PF02254 TrkA-N domain AFE_2922 PF07885 Ion channel AFE_2923 PF00768 D-alanyl-D-alanine carboxypeptidase AFE_2923 PF07943 Penicillin-binding protein 5, C-terminal domain AFE_2924 PF00342 Phosphoglucose isomerase AFE_2926 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFE_2930 PF06736 Protein of unknown function (DUF1211) AFE_2931 PF17946 RecC C-terminal domain AFE_2932 PF00580 UvrD/REP helicase N-terminal domain AFE_2932 PF12705 PD-(D/E)XK nuclease superfamily AFE_2932 PF13361 UvrD-like helicase C-terminal domain AFE_2933 PF13538 UvrD-like helicase C-terminal domain AFE_2944 PF00689 Cation transporting ATPase, C-terminus AFE_2944 PF00690 Cation transporter/ATPase, N-terminus AFE_2945 PF01641 SelR domain AFE_2946 PF01625 Peptide methionine sulfoxide reductase AFE_2948 PF01467 Cytidylyltransferase-like AFE_2950 PF02590 Predicted SPOUT methyltransferase AFE_2953 PF02545 Maf-like protein AFE_2954 PF10150 Ribonuclease E/G family AFE_2954 PF00575 S1 RNA binding domain AFE_2955 PF00072 Response regulator receiver domain AFE_2955 PF00158 Sigma-54 interaction domain AFE_2957 PF00512 His Kinase A (phospho-acceptor) domain AFE_2957 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_2959 PF04362 Bacterial Fe(2+) trafficking AFE_2960 PF00483 Nucleotidyl transferase AFE_2960 PF01050 Mannose-6-phosphate isomerase AFE_2962 PF01061 ABC-2 type transporter AFE_2963 PF00005 ABC transporter AFE_2967 PF13439 Glycosyltransferase Family 4 AFE_2967 PF00534 Glycosyl transferases group 1 AFE_2971 PF00009 Elongation factor Tu GTP binding domain AFE_2973 PF00459 Inositol monophosphatase family AFE_2975 PF02563 Polysaccharide biosynthesis/export protein AFE_2976 PF00534 Glycosyl transferases group 1 AFE_2976 PF13439 Glycosyltransferase Family 4 AFE_2977 PF16363 GDP-mannose 4,6 dehydratase AFE_2982 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AFE_2983 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFE_2985 PF00005 ABC transporter AFE_2985 PF00664 ABC transporter transmembrane region AFE_2986 PF13673 Acetyltransferase (GNAT) domain AFE_2988 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFE_2988 PF00005 ABC transporter AFE_2989 PF00005 ABC transporter AFE_2989 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFE_2990 PF12911 N-terminal TM domain of oligopeptide transport permease C AFE_2990 PF00528 Binding-protein-dependent transport system inner membrane component AFE_2991 PF00528 Binding-protein-dependent transport system inner membrane component AFE_2999 PF01914 MarC family integral membrane protein AFE_3003 PF01618 MotA/TolQ/ExbB proton channel family AFE_3004 PF02472 Biopolymer transport protein ExbD/TolR AFE_3010 PF08240 Alcohol dehydrogenase GroES-like domain AFE_3010 PF00107 Zinc-binding dehydrogenase AFE_3010 PF00698 Acyl transferase domain AFE_3010 PF02801 Beta-ketoacyl synthase, C-terminal domain AFE_3010 PF08659 KR domain AFE_3010 PF16197 Ketoacyl-synthetase C-terminal extension AFE_3010 PF14765 Polyketide synthase dehydratase AFE_3010 PF00550 Phosphopantetheine attachment site AFE_3010 PF00109 Beta-ketoacyl synthase, N-terminal domain AFE_3011 PF00155 Aminotransferase class I and II AFE_3012 PF05159 Capsule polysaccharide biosynthesis protein AFE_3013 PF05159 Capsule polysaccharide biosynthesis protein AFE_3014 PF00106 short chain dehydrogenase AFE_3015 PF14815 NUDIX domain AFE_3015 PF10576 Iron-sulfur binding domain of endonuclease III AFE_3015 PF00633 Helix-hairpin-helix motif AFE_3015 PF00730 HhH-GPD superfamily base excision DNA repair protein AFE_3018 PF05524 PEP-utilising enzyme, N-terminal AFE_3018 PF00391 PEP-utilising enzyme, mobile domain AFE_3018 PF02896 PEP-utilising enzyme, TIM barrel domain AFE_3019 PF00381 PTS HPr component phosphorylation site AFE_3021 PF03668 P-loop ATPase protein family AFE_3022 PF02603 HPr Serine kinase N terminus AFE_3022 PF07475 HPr Serine kinase C-terminal domain AFE_3023 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFE_3023 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFE_3024 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFE_3025 PF04552 Sigma-54, DNA binding domain AFE_3025 PF00309 Sigma-54 factor, Activator interacting domain (AID) AFE_3025 PF04963 Sigma-54 factor, core binding domain AFE_3026 PF00005 ABC transporter AFE_3027 PF03968 OstA-like protein AFE_3030 PF01380 SIS domain AFE_3030 PF00571 CBS domain AFE_3032 PF00483 Nucleotidyl transferase AFE_3033 PF01636 Phosphotransferase enzyme family AFE_3034 PF04453 LPS transport system D AFE_3034 PF03968 OstA-like protein AFE_3035 PF00639 PPIC-type PPIASE domain AFE_3035 PF09312 SurA N-terminal domain AFE_3036 PF01061 ABC-2 type transporter AFE_3037 PF01722 BolA-like protein AFE_3038 PF00462 Glutaredoxin AFE_3039 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFE_3040 PF01634 ATP phosphoribosyltransferase AFE_3041 PF00815 Histidinol dehydrogenase AFE_3042 PF00155 Aminotransferase class I and II AFE_3043 PF00475 Imidazoleglycerol-phosphate dehydratase AFE_3044 PF00117 Glutamine amidotransferase class-I AFE_3045 PF00977 Histidine biosynthesis protein AFE_3046 PF00977 Histidine biosynthesis protein AFE_3047 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFE_3047 PF01502 Phosphoribosyl-AMP cyclohydrolase AFE_3048 PF02416 mttA/Hcf106 family AFE_3049 PF02416 mttA/Hcf106 family AFE_3050 PF00902 Sec-independent protein translocase protein (TatC) AFE_3051 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFE_3051 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFE_3052 PF00101 Ribulose bisphosphate carboxylase, small chain AFE_3053 PF07728 AAA domain (dynein-related subfamily) AFE_3053 PF08406 CbbQ/NirQ/NorQ C-terminal AFE_3057 PF00990 Diguanylate cyclase, GGDEF domain AFE_3057 PF00563 EAL domain AFE_3057 PF03707 Bacterial signalling protein N terminal repeat AFE_3058 PF01979 Amidohydrolase family AFE_3059 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFE_3059 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFE_3060 PF00156 Phosphoribosyl transferase domain AFE_3061 PF03652 Holliday junction resolvase AFE_3062 PF02622 Uncharacterized ACR, COG1678 AFE_3063 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AFE_3063 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AFE_3065 PF00285 Citrate synthase, C-terminal domain AFE_3067 PF01521 Iron-sulphur cluster biosynthesis AFE_3068 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFE_3068 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFE_3069 PF02780 Transketolase, C-terminal domain AFE_3069 PF02779 Transketolase, pyrimidine binding domain AFE_3069 PF00364 Biotin-requiring enzyme AFE_3070 PF00676 Dehydrogenase E1 component AFE_3073 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFE_3073 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFE_3074 PF00380 Ribosomal protein S9/S16 AFE_3075 PF00572 Ribosomal protein L13 AFE_3079 PF00881 Nitroreductase family AFE_3085 PF00579 tRNA synthetases class I (W and Y) AFE_3086 PF00690 Cation transporter/ATPase, N-terminus AFE_3086 PF00689 Cation transporting ATPase, C-terminus AFE_3089 PF02261 Aspartate decarboxylase AFE_3092 PF01926 50S ribosome-binding GTPase AFE_3093 PF02254 TrkA-N domain AFE_3093 PF07885 Ion channel AFE_3094 PF01612 3'-5' exonuclease AFE_3094 PF00476 DNA polymerase family A AFE_3094 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFE_3094 PF01367 5'-3' exonuclease, C-terminal SAM fold AFE_3095 PF03641 Possible lysine decarboxylase AFE_3097 PF01636 Phosphotransferase enzyme family AFE_3101 PF00580 UvrD/REP helicase N-terminal domain AFE_3101 PF13361 UvrD-like helicase C-terminal domain AFE_3102 PF00226 DnaJ domain AFE_3102 PF01556 DnaJ C terminal domain AFE_3103 PF05139 Erythromycin esterase AFE_3103 PF00156 Phosphoribosyl transferase domain AFE_3104 PF02811 PHP domain AFE_3104 PF14791 DNA polymerase beta thumb AFE_3104 PF14716 Helix-hairpin-helix domain AFE_3107 PF00034 Cytochrome c AFE_3108 PF00106 short chain dehydrogenase AFE_3109 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AFE_3109 PF00355 Rieske [2Fe-2S] domain AFE_3110 PF00033 Cytochrome b/b6/petB AFE_3110 PF00032 Cytochrome b(C-terminal)/b6/petD AFE_3112 PF05140 ResB-like family AFE_3113 PF01578 Cytochrome C assembly protein AFE_3121 PF00175 Oxidoreductase NAD-binding domain AFE_3121 PF00258 Flavodoxin AFE_3121 PF00667 FAD binding domain AFE_3122 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFE_3122 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFE_3123 PF01507 Phosphoadenosine phosphosulfate reductase family AFE_3124 PF01507 Phosphoadenosine phosphosulfate reductase family AFE_3125 PF00009 Elongation factor Tu GTP binding domain AFE_3126 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFE_3131 PF02416 mttA/Hcf106 family AFE_3136 PF00512 His Kinase A (phospho-acceptor) domain AFE_3136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_3137 PF00072 Response regulator receiver domain AFE_3141 PF02082 Transcriptional regulator AFE_3142 PF07690 Major Facilitator Superfamily AFE_3143 PF01040 UbiA prenyltransferase family AFE_3146 PF00127 Copper binding proteins, plastocyanin/azurin family AFE_3149 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFE_3150 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFE_3152 PF00034 Cytochrome c AFE_3158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_3158 PF00183 Hsp90 protein AFE_3161 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFE_3161 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFE_3164 PF00005 ABC transporter AFE_3172 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFE_3176 PF01695 IstB-like ATP binding protein AFE_3177 PF00665 Integrase core domain AFE_3183 PF02371 Transposase IS116/IS110/IS902 family AFE_3183 PF01548 Transposase AFE_3186 PF04471 Restriction endonuclease AFE_3186 PF14338 Mrr N-terminal domain AFE_3192 PF01555 DNA methylase AFE_3194 PF17191 RecG wedge domain AFE_3194 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AFE_3194 PF00270 DEAD/DEAH box helicase AFE_3197 PF13401 AAA domain AFE_3197 PF11426 Tn7 transposition regulator TnsC AFE_3198 PF00665 Integrase core domain AFE_3199 PF08722 TnsA endonuclease N terminal AFE_3199 PF08721 TnsA endonuclease C terminal AFE_3200 PF01380 SIS domain AFE_3201 PF14602 Hexapeptide repeat of succinyl-transferase AFE_3201 PF00132 Bacterial transferase hexapeptide (six repeats) AFE_3201 PF12804 MobA-like NTP transferase domain AFE_3202 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AFE_3202 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFE_3203 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFE_3203 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFE_3204 PF00231 ATP synthase AFE_3205 PF00306 ATP synthase alpha/beta chain, C terminal domain AFE_3205 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFE_3205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFE_3206 PF00213 ATP synthase delta (OSCP) subunit AFE_3207 PF00430 ATP synthase B/B' CF(0) AFE_3208 PF00137 ATP synthase subunit C AFE_3209 PF00119 ATP synthase A chain AFE_3211 PF02195 ParB-like nuclease domain AFE_3211 PF17762 HTH domain found in ParB protein AFE_3212 PF13614 AAA domain AFE_3213 PF02527 rRNA small subunit methyltransferase G AFE_3214 PF01134 Glucose inhibited division protein A AFE_3214 PF13932 GidA associated domain AFE_3217 PF00994 Probable molybdopterin binding domain AFE_3223 PF03358 NADPH-dependent FMN reductase AFE_3224 PF05726 Pirin C-terminal cupin domain AFE_3224 PF02678 Pirin AFE_3235 PF01061 ABC-2 type transporter AFE_3236 PF00005 ABC transporter AFE_3237 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFE_3239 PF03232 Ubiquinone biosynthesis protein COQ7 AFE_3240 PF02082 Transcriptional regulator AFE_3242 PF00218 Indole-3-glycerol phosphate synthase AFE_3243 PF00591 Glycosyl transferase family, a/b domain AFE_3243 PF02885 Glycosyl transferase family, helical bundle domain AFE_3244 PF00117 Glutamine amidotransferase class-I AFE_3245 PF04715 Anthranilate synthase component I, N terminal region AFE_3245 PF00425 chorismate binding enzyme AFE_3246 PF13419 Haloacid dehalogenase-like hydrolase AFE_3247 PF00834 Ribulose-phosphate 3 epimerase family AFE_3248 PF01116 Fructose-bisphosphate aldolase class-II AFE_3249 PF02887 Pyruvate kinase, alpha/beta domain AFE_3249 PF00224 Pyruvate kinase, barrel domain AFE_3250 PF00162 Phosphoglycerate kinase AFE_3251 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFE_3251 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFE_3252 PF00456 Transketolase, thiamine diphosphate binding domain AFE_3252 PF02780 Transketolase, C-terminal domain AFE_3252 PF02779 Transketolase, pyrimidine binding domain AFE_3253 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFE_3254 PF00459 Inositol monophosphatase family AFE_3257 PF04452 RNA methyltransferase AFE_3258 PF02401 LytB protein AFE_3259 PF02646 RmuC family AFE_3260 PF01741 Large-conductance mechanosensitive channel, MscL AFE_3262 PF00873 AcrB/AcrD/AcrF family AFE_3264 PF13533 Biotin-lipoyl like AFE_3267 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AFE_3274 PF00486 Transcriptional regulatory protein, C terminal AFE_3274 PF00072 Response regulator receiver domain AFE_3275 PF00512 His Kinase A (phospho-acceptor) domain AFE_3275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFE_3275 PF00672 HAMP domain AFE_3277 PF00206 Lyase AFE_3277 PF14698 Argininosuccinate lyase C-terminal AFE_3279 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFE_3279 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFE_3280 PF01161 Phosphatidylethanolamine-binding protein AFE_3283 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFE_3283 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AFE_3285 PF02754 Cysteine-rich domain AFE_3285 PF13183 4Fe-4S dicluster domain AFE_3285 PF02665 Nitrate reductase gamma subunit AFE_3286 PF00374 Nickel-dependent hydrogenase AFE_3287 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AFE_3288 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFE_3289 PF01455 HupF/HypC family AFE_3290 PF01924 Hydrogenase formation hypA family AFE_3291 PF16363 GDP-mannose 4,6 dehydratase AFE_3292 PF16363 GDP-mannose 4,6 dehydratase AFE_3293 PF01050 Mannose-6-phosphate isomerase AFE_3293 PF00483 Nucleotidyl transferase AFE_3294 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFE_3295 PF00483 Nucleotidyl transferase AFE_3296 PF07690 Major Facilitator Superfamily AFE_3298 PF00490 Delta-aminolevulinic acid dehydratase AFE_3300 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFE_3300 PF03900 Porphobilinogen deaminase, C-terminal domain AFE_3302 PF01230 HIT domain AFE_3303 PF00202 Aminotransferase class-III AFE_3304 PF02581 Thiamine monophosphate synthase AFE_3305 PF08543 Phosphomethylpyrimidine kinase AFE_3307 PF00106 short chain dehydrogenase AFE_3309 PF00308 Bacterial dnaA protein AFE_3309 PF08299 Bacterial dnaA protein helix-turn-helix AFE_3309 PF11638 DnaA N-terminal domain