AFE_0044	PWY-5303	thiosulfate oxidation II (via tetrathionate)
AFE_0048	PWY-5303	thiosulfate oxidation II (via tetrathionate)
AFE_0057	PWY-5316	nicotine biosynthesis
AFE_0057	PWY-7342	superpathway of nicotine biosynthesis
AFE_0068	PWY-6703	preQ<sub>0</sub> biosynthesis
AFE_0069	PWY-6703	preQ<sub>0</sub> biosynthesis
AFE_0095	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AFE_0095	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFE_0126	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AFE_0126	PWY-6148	tetrahydromethanopterin biosynthesis
AFE_0126	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AFE_0126	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AFE_0134	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AFE_0141	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
AFE_0157	PWY-6834	spermidine biosynthesis III
AFE_0181	PWY-7883	AFE_0181
AFE_0182	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_0187	PWY-7851	AFE_0187
AFE_0189	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_0197	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_0197	PWY-6416	quinate degradation II
AFE_0197	PWY-6707	gallate biosynthesis
AFE_0203	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_0203	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_0203	PWY-7953	AFE_0203
AFE_0204	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_0204	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_0204	PWY-7953	AFE_0204
AFE_0205	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_0205	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_0205	PWY-7953	AFE_0205
AFE_0206	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_0206	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFE_0206	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_0206	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_0207	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_0207	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFE_0207	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_0207	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_0208	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_0208	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_0209	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_0209	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_0209	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_0210	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_0210	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_0210	PWY-7953	AFE_0210
AFE_0226	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_0227	PWY-6502	oxidized GTP and dGTP detoxification
AFE_0227	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFE_0227	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFE_0227	PWY-6897	thiamin salvage II
AFE_0227	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AFE_0227	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AFE_0227	PWY-7356	thiamin salvage IV (yeast)
AFE_0227	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AFE_0237	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AFE_0243	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_0243	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AFE_0243	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AFE_0244	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_0245	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_0246	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AFE_0248	PWY-7801	AFE_0248
AFE_0249	PWY-7802	AFE_0249
AFE_0256	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_0256	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_0259	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AFE_0262	PWY-3341	L-proline biosynthesis III
AFE_0262	PWY-4981	L-proline biosynthesis II (from arginine)
AFE_0262	PWY-6344	L-ornithine degradation II (Stickland reaction)
AFE_0263	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_0272	PWY-6123	inosine-5'-phosphate biosynthesis I
AFE_0272	PWY-7234	inosine-5'-phosphate biosynthesis III
AFE_0281	PWY-3341	L-proline biosynthesis III
AFE_0281	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFE_0287	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFE_0287	PWY-5743	3-hydroxypropanoate cycle
AFE_0287	PWY-5744	glyoxylate assimilation
AFE_0287	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFE_0287	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_0287	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFE_0287	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFE_0288	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFE_0288	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AFE_0288	PWY-6936	seleno-amino acid biosynthesis
AFE_0288	PWY-702	L-methionine biosynthesis II
AFE_0289	PWY-5839	menaquinol-7 biosynthesis
AFE_0289	PWY-5844	menaquinol-9 biosynthesis
AFE_0289	PWY-5849	menaquinol-6 biosynthesis
AFE_0289	PWY-5890	menaquinol-10 biosynthesis
AFE_0289	PWY-5891	menaquinol-11 biosynthesis
AFE_0289	PWY-5892	menaquinol-12 biosynthesis
AFE_0289	PWY-5895	menaquinol-13 biosynthesis
AFE_0292	PWY-5344	L-homocysteine biosynthesis
AFE_0295	PWY-1622	formaldehyde assimilation I (serine pathway)
AFE_0295	PWY-181	photorespiration
AFE_0295	PWY-2161	folate polyglutamylation
AFE_0295	PWY-2201	folate transformations I
AFE_0295	PWY-3661	glycine betaine degradation I
AFE_0295	PWY-3661-1	glycine betaine degradation II (mammalian)
AFE_0295	PWY-3841	folate transformations II
AFE_0295	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_0297	PWY-7991	AFE_0297
AFE_0298	PWY-6167	flavin biosynthesis II (archaea)
AFE_0298	PWY-6168	flavin biosynthesis III (fungi)
AFE_0298	PWY-7980	AFE_0298
AFE_0299	PWY-6167	flavin biosynthesis II (archaea)
AFE_0299	PWY-6168	flavin biosynthesis III (fungi)
AFE_0299	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AFE_0299	PWY-7991	AFE_0299
AFE_0300	PWY-6167	flavin biosynthesis II (archaea)
AFE_0300	PWY-6168	flavin biosynthesis III (fungi)
AFE_0348	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_0357	PWY-7851	AFE_0357
AFE_0359	PWY-7039	phosphatidate metabolism, as a signaling molecule
AFE_0359	PWY-7817	AFE_0359
AFE_0366	PWY-4081	glutathione redox reactions I
AFE_0370	PWY-7560	methylerythritol phosphate pathway II
AFE_0371	PWY-7560	methylerythritol phosphate pathway II
AFE_0380	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AFE_0397	PWY-5386	methylglyoxal degradation I
AFE_0402	PWY-5386	methylglyoxal degradation I
AFE_0403	PWY-5532	adenosine nucleotides degradation IV
AFE_0403	PWY-7181	pyrimidine deoxyribonucleosides degradation
AFE_0404	PWY-4983	L-citrulline-nitric oxide cycle
AFE_0404	PWY-4984	urea cycle
AFE_0404	PWY-5	canavanine biosynthesis
AFE_0404	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_0404	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_0405	PWY-4981	L-proline biosynthesis II (from arginine)
AFE_0405	PWY-4984	urea cycle
AFE_0405	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_0407	PWY-2941	L-lysine biosynthesis II
AFE_0407	PWY-2942	L-lysine biosynthesis III
AFE_0407	PWY-5097	L-lysine biosynthesis VI
AFE_0407	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AFE_0407	PWY-6559	spermidine biosynthesis II
AFE_0407	PWY-6562	norspermidine biosynthesis
AFE_0407	PWY-7153	grixazone biosynthesis
AFE_0407	PWY-7977	AFE_0407
AFE_0419	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_0419	PWY-5723	Rubisco shunt
AFE_0420	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFE_0420	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFE_0420	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFE_0420	PWY-6113	superpathway of mycolate biosynthesis
AFE_0420	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFE_0420	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_0420	PWY-7663	gondoate biosynthesis (anaerobic)
AFE_0420	PWY-7664	oleate biosynthesis IV (anaerobic)
AFE_0420	PWY-7858	AFE_0420
AFE_0420	PWYG-321	mycolate biosynthesis
AFE_0422	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_0424	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_0424	PWY-6549	L-glutamine biosynthesis III
AFE_0424	PWY-6728	methylaspartate cycle
AFE_0424	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFE_0424	PWY-7124	ethylene biosynthesis V (engineered)
AFE_0424	PWY-7254	TCA cycle VII (acetate-producers)
AFE_0424	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AFE_0425	PWY-5392	reductive TCA cycle II
AFE_0425	PWY-5537	pyruvate fermentation to acetate V
AFE_0425	PWY-5538	pyruvate fermentation to acetate VI
AFE_0425	PWY-5690	TCA cycle II (plants and fungi)
AFE_0425	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_0425	PWY-6728	methylaspartate cycle
AFE_0425	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFE_0425	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFE_0427	PWY-5392	reductive TCA cycle II
AFE_0427	PWY-5537	pyruvate fermentation to acetate V
AFE_0427	PWY-5538	pyruvate fermentation to acetate VI
AFE_0427	PWY-5690	TCA cycle II (plants and fungi)
AFE_0427	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_0427	PWY-6728	methylaspartate cycle
AFE_0427	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFE_0427	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFE_0428	PWY-5381	pyridine nucleotide cycling (plants)
AFE_0428	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AFE_0428	PWY-7761	AFE_0428
AFE_0433	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AFE_0433	PWY-5389	3-methylthiopropanoate biosynthesis
AFE_0434	PWY-5532	adenosine nucleotides degradation IV
AFE_0434	PWY-5723	Rubisco shunt
AFE_0436	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AFE_0441	PWY-3221	dTDP-L-rhamnose biosynthesis II
AFE_0441	PWY-6808	dTDP-D-forosamine biosynthesis
AFE_0441	PWY-6942	dTDP-D-desosamine biosynthesis
AFE_0441	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AFE_0441	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AFE_0441	PWY-6974	dTDP-L-olivose biosynthesis
AFE_0441	PWY-6976	dTDP-L-mycarose biosynthesis
AFE_0441	PWY-7104	dTDP-L-megosamine biosynthesis
AFE_0441	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AFE_0441	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AFE_0441	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AFE_0441	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AFE_0441	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AFE_0441	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AFE_0441	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AFE_0441	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AFE_0441	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AFE_0441	PWY-7688	AFE_0441
AFE_0441	PWY-7814	AFE_0441
AFE_0445	PWY-3801	sucrose degradation II (sucrose synthase)
AFE_0445	PWY-6527	stachyose degradation
AFE_0445	PWY-7238	sucrose biosynthesis II
AFE_0445	PWY-7343	UDP-glucose biosynthesis
AFE_0445	PWY-7817	AFE_0445
AFE_0451	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AFE_0451	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AFE_0451	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AFE_0452	PWY-3961	phosphopantothenate biosynthesis II
AFE_0453	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AFE_0453	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AFE_0454	PWY-3341	L-proline biosynthesis III
AFE_0454	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFE_0460	PWY-7731	AFE_0460
AFE_0462	PWY-6454	vancomycin resistance I
AFE_0462	PWY-6455	vancomycin resistance II
AFE_0466	PWY-381	nitrate reduction II (assimilatory)
AFE_0466	PWY-5675	nitrate reduction V (assimilatory)
AFE_0466	PWY-6549	L-glutamine biosynthesis III
AFE_0466	PWY-6963	ammonia assimilation cycle I
AFE_0466	PWY-6964	ammonia assimilation cycle II
AFE_0468	PWY-5381	pyridine nucleotide cycling (plants)
AFE_0468	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFE_0468	PWY-6596	adenosine nucleotides degradation I
AFE_0468	PWY-6606	guanosine nucleotides degradation II
AFE_0468	PWY-6607	guanosine nucleotides degradation I
AFE_0468	PWY-6608	guanosine nucleotides degradation III
AFE_0468	PWY-7185	UTP and CTP dephosphorylation I
AFE_0468	PWY-7821	AFE_0468
AFE_0488	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AFE_0491	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_0492	PWY-7805	AFE_0492
AFE_0492	PWY-7807	AFE_0492
AFE_0498	PWY-7352	daunorubicin biosynthesis
AFE_0498	PWY-7354	aclacinomycin biosynthesis
AFE_0500	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFE_0526	PWY-1042	glycolysis IV (plant cytosol)
AFE_0526	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_0526	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_0526	PWY-5723	Rubisco shunt
AFE_0526	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_0526	PWY-6886	1-butanol autotrophic biosynthesis
AFE_0526	PWY-6901	superpathway of glucose and xylose degradation
AFE_0526	PWY-7003	glycerol degradation to butanol
AFE_0526	PWY-7124	ethylene biosynthesis V (engineered)
AFE_0526	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_0527	PWY-5941	glycogen degradation II (eukaryotic)
AFE_0527	PWY-6731	starch degradation III
AFE_0527	PWY-6737	starch degradation V
AFE_0527	PWY-7238	sucrose biosynthesis II
AFE_0529	PWY-5350	thiosulfate disproportionation III (rhodanese)
AFE_0529	PWY-7927	AFE_0529
AFE_0532	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFE_0532	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AFE_0534	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFE_0535	PWY-2201	folate transformations I
AFE_0535	PWY-3841	folate transformations II
AFE_0536	PWY-5723	Rubisco shunt
AFE_0539	PWY-5278	sulfite oxidation III
AFE_0539	PWY-5340	sulfate activation for sulfonation
AFE_0539	PWY-6683	sulfate reduction III (assimilatory)
AFE_0539	PWY-6932	selenate reduction
AFE_0547	PWY-5057	L-valine degradation II
AFE_0547	PWY-5076	L-leucine degradation III
AFE_0547	PWY-5078	L-isoleucine degradation II
AFE_0547	PWY-5101	L-isoleucine biosynthesis II
AFE_0547	PWY-5103	L-isoleucine biosynthesis III
AFE_0547	PWY-5104	L-isoleucine biosynthesis IV
AFE_0547	PWY-5108	L-isoleucine biosynthesis V
AFE_0547	PWY-7767	AFE_0547
AFE_0555	PWY-7884	AFE_0555
AFE_0557	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AFE_0557	PWY-6167	flavin biosynthesis II (archaea)
AFE_0557	PWY-6168	flavin biosynthesis III (fungi)
AFE_0557	PWY-7863	AFE_0557
AFE_0563	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFE_0570	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFE_0576	PWY-5958	acridone alkaloid biosynthesis
AFE_0576	PWY-6543	4-aminobenzoate biosynthesis
AFE_0576	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFE_0576	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFE_0593	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
AFE_0593	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AFE_0593	PWY-6148	tetrahydromethanopterin biosynthesis
AFE_0593	PWY-7742	AFE_0593
AFE_0593	PWY-7745	AFE_0593
AFE_0593	PWY-7929	AFE_0593
AFE_0593	PWY-7934	AFE_0593
AFE_0593	PWY-7935	AFE_0593
AFE_0614	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_0614	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFE_0614	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_0614	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_0618	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AFE_0618	PWY-7820	AFE_0618
AFE_0628	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AFE_0628	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFE_0629	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_0629	PWY-5723	Rubisco shunt
AFE_0632	PWY-3781	aerobic respiration I (cytochrome c)
AFE_0632	PWY-4521	arsenite oxidation I (respiratory)
AFE_0632	PWY-6692	Fe(II) oxidation
AFE_0632	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFE_0636	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AFE_0639	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_0639	PWY-5686	UMP biosynthesis
AFE_0639	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_0639	PWY-7790	AFE_0639
AFE_0639	PWY-7791	AFE_0639
AFE_0640	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_0640	PWY-5686	UMP biosynthesis
AFE_0640	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_0640	PWY-7790	AFE_0640
AFE_0640	PWY-7791	AFE_0640
AFE_0643	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_0643	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_0645	PWY-7883	AFE_0645
AFE_0658	PWY-7980	AFE_0658
AFE_0662	PWY-5101	L-isoleucine biosynthesis II
AFE_0662	PWY-5103	L-isoleucine biosynthesis III
AFE_0662	PWY-5104	L-isoleucine biosynthesis IV
AFE_0662	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_0664	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_0669	PWY-2301	<i>myo</i>-inositol biosynthesis
AFE_0669	PWY-4702	phytate degradation I
AFE_0669	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AFE_0671	PWY-6936	seleno-amino acid biosynthesis
AFE_0671	PWY-7274	D-cycloserine biosynthesis
AFE_0671	PWY-7870	AFE_0671
AFE_0673	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AFE_0680	PWY-7887	AFE_0680
AFE_0680	PWY-7892	AFE_0680
AFE_0696	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFE_0697	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFE_0697	PWY-3162	L-tryptophan degradation V (side chain pathway)
AFE_0697	PWY-5057	L-valine degradation II
AFE_0697	PWY-5076	L-leucine degradation III
AFE_0697	PWY-5078	L-isoleucine degradation II
AFE_0697	PWY-5079	L-phenylalanine degradation III
AFE_0697	PWY-5082	L-methionine degradation III
AFE_0697	PWY-5480	pyruvate fermentation to ethanol I
AFE_0697	PWY-5486	pyruvate fermentation to ethanol II
AFE_0697	PWY-5751	phenylethanol biosynthesis
AFE_0697	PWY-6313	serotonin degradation
AFE_0697	PWY-6333	acetaldehyde biosynthesis I
AFE_0697	PWY-6342	noradrenaline and adrenaline degradation
AFE_0697	PWY-6587	pyruvate fermentation to ethanol III
AFE_0697	PWY-6802	salidroside biosynthesis
AFE_0697	PWY-6871	3-methylbutanol biosynthesis
AFE_0697	PWY-7013	L-1,2-propanediol degradation
AFE_0697	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_0697	PWY-7118	chitin degradation to ethanol
AFE_0697	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AFE_0697	PWY-7798	AFE_0697
AFE_0698	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFE_0728	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AFE_0728	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFE_0728	PWY-7766	AFE_0728
AFE_0732	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_0733	PWY-6164	3-dehydroquinate biosynthesis I
AFE_0734	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_0745	PWY-5101	L-isoleucine biosynthesis II
AFE_0745	PWY-5103	L-isoleucine biosynthesis III
AFE_0745	PWY-5104	L-isoleucine biosynthesis IV
AFE_0745	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AFE_0745	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AFE_0745	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AFE_0745	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_0746	PWY-5101	L-isoleucine biosynthesis II
AFE_0746	PWY-5103	L-isoleucine biosynthesis III
AFE_0746	PWY-5104	L-isoleucine biosynthesis IV
AFE_0746	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AFE_0746	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AFE_0746	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AFE_0746	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_0747	PWY-5103	L-isoleucine biosynthesis III
AFE_0747	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_0748	PWY-5669	phosphatidylethanolamine biosynthesis I
AFE_0749	PWY-1042	glycolysis IV (plant cytosol)
AFE_0749	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_0749	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_0749	PWY-5723	Rubisco shunt
AFE_0749	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_0749	PWY-6886	1-butanol autotrophic biosynthesis
AFE_0749	PWY-6901	superpathway of glucose and xylose degradation
AFE_0749	PWY-7003	glycerol degradation to butanol
AFE_0749	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_0749	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_0750	PWY-5669	phosphatidylethanolamine biosynthesis I
AFE_0752	PWY-6700	queuosine biosynthesis
AFE_0773	PWY-6610	adenine and adenosine salvage IV
AFE_0778	PWY-5694	allantoin degradation to glyoxylate I
AFE_0778	PWY-5705	allantoin degradation to glyoxylate III
AFE_0782	PWY-5169	cyanurate degradation
AFE_0782	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFE_0785	PWY-4041	&gamma;-glutamyl cycle
AFE_0785	PWY-4061	glutathione-mediated detoxification I
AFE_0785	PWY-5826	hypoglycin biosynthesis
AFE_0785	PWY-6842	glutathione-mediated detoxification II
AFE_0785	PWY-7112	4-hydroxy-2-nonenal detoxification
AFE_0785	PWY-7559	glutathione degradation (DUG pathway - yeast)
AFE_0786	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AFE_0786	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFE_0847	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AFE_0847	PWY-7177	UTP and CTP dephosphorylation II
AFE_0847	PWY-7185	UTP and CTP dephosphorylation I
AFE_0848	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_0848	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFE_0849	PWY-1042	glycolysis IV (plant cytosol)
AFE_0849	PWY-1622	formaldehyde assimilation I (serine pathway)
AFE_0849	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_0849	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_0849	PWY-5723	Rubisco shunt
AFE_0849	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_0849	PWY-6886	1-butanol autotrophic biosynthesis
AFE_0849	PWY-6901	superpathway of glucose and xylose degradation
AFE_0849	PWY-7003	glycerol degradation to butanol
AFE_0849	PWY-7124	ethylene biosynthesis V (engineered)
AFE_0849	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_0854	PWY-5269	cardiolipin biosynthesis II
AFE_0854	PWY-5668	cardiolipin biosynthesis I
AFE_0854	PWY-7817	AFE_0854
AFE_0893	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AFE_0893	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AFE_0897	PWY-3461	L-tyrosine biosynthesis II
AFE_0897	PWY-3462	L-phenylalanine biosynthesis II
AFE_0897	PWY-6120	L-tyrosine biosynthesis III
AFE_0897	PWY-6627	salinosporamide A biosynthesis
AFE_0897	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AFE_0897	PWY-7626	bacilysin biosynthesis
AFE_0899	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_0899	PWY-6164	3-dehydroquinate biosynthesis I
AFE_0899	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFE_0900	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AFE_0901	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_0902	PWY-7205	CMP phosphorylation
AFE_0907	PWY-5686	UMP biosynthesis
AFE_0907	PWY-7790	AFE_0907
AFE_0907	PWY-7791	AFE_0907
AFE_0908	PWY-5686	UMP biosynthesis
AFE_0908	PWY-7790	AFE_0908
AFE_0908	PWY-7791	AFE_0908
AFE_0925	PWY-7799	AFE_0925
AFE_0925	PWY-7800	AFE_0925
AFE_0928	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFE_0928	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFE_0928	PWY-6896	thiamin salvage I
AFE_0928	PWY-6897	thiamin salvage II
AFE_0929	PWY-5269	cardiolipin biosynthesis II
AFE_0929	PWY-5668	cardiolipin biosynthesis I
AFE_0929	PWY-7817	AFE_0929
AFE_0943	PWY-6749	CMP-legionaminate biosynthesis I
AFE_0948	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AFE_0976	PWY-6823	molybdenum cofactor biosynthesis
AFE_0976	PWY-7887	AFE_0976
AFE_1292	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AFE_1342	PWY-3821	galactose degradation III
AFE_1342	PWY-6317	galactose degradation I (Leloir pathway)
AFE_1342	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AFE_1342	PWY-6527	stachyose degradation
AFE_1342	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AFE_1342	PWY-7344	UDP-D-galactose biosynthesis
AFE_1343	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AFE_1343	PWY-7820	AFE_1343
AFE_1366	PWY-5659	GDP-mannose biosynthesis
AFE_1366	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AFE_1392	PWY-5316	nicotine biosynthesis
AFE_1392	PWY-7342	superpathway of nicotine biosynthesis
AFE_1404	PWY-6012	acyl carrier protein metabolism I
AFE_1404	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AFE_1404	PWY-6289	petrobactin biosynthesis
AFE_1405	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AFE_1405	PWY-7820	AFE_1405
AFE_1449	PWY-5667	CDP-diacylglycerol biosynthesis I
AFE_1449	PWY-5981	CDP-diacylglycerol biosynthesis III
AFE_1449	PWY-7817	AFE_1449
AFE_1450	PWY-7560	methylerythritol phosphate pathway II
AFE_1455	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFE_1455	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFE_1455	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFE_1455	PWY-5994	palmitate biosynthesis I (animals and fungi)
AFE_1455	PWY-6113	superpathway of mycolate biosynthesis
AFE_1455	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFE_1455	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_1455	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFE_1455	PWY-7663	gondoate biosynthesis (anaerobic)
AFE_1455	PWY-7664	oleate biosynthesis IV (anaerobic)
AFE_1455	PWY-7858	AFE_1455
AFE_1455	PWYG-321	mycolate biosynthesis
AFE_1462	PWY-4381	fatty acid biosynthesis initiation I
AFE_1462	PWY-5743	3-hydroxypropanoate cycle
AFE_1462	PWY-5744	glyoxylate assimilation
AFE_1462	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFE_1462	PWY-6722	candicidin biosynthesis
AFE_1463	PWY-5686	UMP biosynthesis
AFE_1463	PWY-7790	AFE_1463
AFE_1463	PWY-7791	AFE_1463
AFE_1471	PWY-40	putrescine biosynthesis I
AFE_1471	PWY-43	putrescine biosynthesis II
AFE_1471	PWY-6305	putrescine biosynthesis IV
AFE_1471	PWY-6834	spermidine biosynthesis III
AFE_1505	PWY-6936	seleno-amino acid biosynthesis
AFE_1505	PWY-7274	D-cycloserine biosynthesis
AFE_1505	PWY-7870	AFE_1505
AFE_1506	PWY-3081	L-lysine biosynthesis V
AFE_1506	PWY-6871	3-methylbutanol biosynthesis
AFE_1506	PWY-7710	AFE_1506
AFE_1507	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AFE_1529	PWY-6823	molybdenum cofactor biosynthesis
AFE_1537	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AFE_1544	PWY-5381	pyridine nucleotide cycling (plants)
AFE_1552	PWY-3801	sucrose degradation II (sucrose synthase)
AFE_1672	PWY-5686	UMP biosynthesis
AFE_1672	PWY-7790	AFE_1672
AFE_1672	PWY-7791	AFE_1672
AFE_1673	PWY-5101	L-isoleucine biosynthesis II
AFE_1673	PWY-5103	L-isoleucine biosynthesis III
AFE_1673	PWY-5104	L-isoleucine biosynthesis IV
AFE_1673	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_1675	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AFE_1681	PWY-7158	L-phenylalanine degradation V
AFE_1690	PWY-5532	adenosine nucleotides degradation IV
AFE_1690	PWY-5723	Rubisco shunt
AFE_1691	PWY-5532	adenosine nucleotides degradation IV
AFE_1691	PWY-5723	Rubisco shunt
AFE_1771	PWY-6654	phosphopantothenate biosynthesis III
AFE_1777	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFE_1777	PWY-6596	adenosine nucleotides degradation I
AFE_1777	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFE_1778	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFE_1783	PWY-3341	L-proline biosynthesis III
AFE_1783	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFE_1799	PWY-5941	glycogen degradation II (eukaryotic)
AFE_1799	PWY-6731	starch degradation III
AFE_1799	PWY-6737	starch degradation V
AFE_1799	PWY-7238	sucrose biosynthesis II
AFE_1800	PWY-1042	glycolysis IV (plant cytosol)
AFE_1800	PWY-1622	formaldehyde assimilation I (serine pathway)
AFE_1800	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_1800	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_1800	PWY-5723	Rubisco shunt
AFE_1800	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_1800	PWY-6886	1-butanol autotrophic biosynthesis
AFE_1800	PWY-6901	superpathway of glucose and xylose degradation
AFE_1800	PWY-7003	glycerol degradation to butanol
AFE_1800	PWY-7124	ethylene biosynthesis V (engineered)
AFE_1800	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_1801	PWY-1042	glycolysis IV (plant cytosol)
AFE_1801	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_1801	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_1801	PWY-5723	Rubisco shunt
AFE_1801	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_1801	PWY-6886	1-butanol autotrophic biosynthesis
AFE_1801	PWY-6901	superpathway of glucose and xylose degradation
AFE_1801	PWY-7003	glycerol degradation to butanol
AFE_1801	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_1801	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_1808	PWY-1281	sulfoacetaldehyde degradation I
AFE_1808	PWY-5482	pyruvate fermentation to acetate II
AFE_1808	PWY-5485	pyruvate fermentation to acetate IV
AFE_1808	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_1808	PWY-6637	sulfolactate degradation II
AFE_1810	PWY-5482	pyruvate fermentation to acetate II
AFE_1810	PWY-5485	pyruvate fermentation to acetate IV
AFE_1810	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_1815	PWY-1042	glycolysis IV (plant cytosol)
AFE_1815	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_1815	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_1815	PWY-5723	Rubisco shunt
AFE_1815	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_1815	PWY-6886	1-butanol autotrophic biosynthesis
AFE_1815	PWY-6901	superpathway of glucose and xylose degradation
AFE_1815	PWY-7003	glycerol degradation to butanol
AFE_1815	PWY-7124	ethylene biosynthesis V (engineered)
AFE_1815	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_1816	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_1816	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_1823	PWY-181	photorespiration
AFE_1825	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AFE_1825	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AFE_1825	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AFE_1825	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AFE_1825	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AFE_1825	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AFE_1825	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AFE_1825	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AFE_1825	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AFE_1825	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AFE_1843	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_1843	PWY-5723	Rubisco shunt
AFE_1843	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_1843	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_1843	PWY-6901	superpathway of glucose and xylose degradation
AFE_1843	PWY-7560	methylerythritol phosphate pathway II
AFE_1858	PWY-5941	glycogen degradation II (eukaryotic)
AFE_1861	PWY-7158	L-phenylalanine degradation V
AFE_1877	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AFE_1877	PWY-2201	folate transformations I
AFE_1877	PWY-3841	folate transformations II
AFE_1877	PWY-5030	L-histidine degradation III
AFE_1877	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_1877	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AFE_1877	PWY-7909	AFE_1877
AFE_1883	PWY-1622	formaldehyde assimilation I (serine pathway)
AFE_1883	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFE_1883	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_1883	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_1883	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AFE_1883	PWY-6549	L-glutamine biosynthesis III
AFE_1883	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFE_1883	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFE_1883	PWY-7124	ethylene biosynthesis V (engineered)
AFE_1889	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_1896	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_1896	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AFE_1897	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_1897	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFE_1897	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFE_1898	PWY-6854	ethylene biosynthesis III (microbes)
AFE_1900	PWY-5269	cardiolipin biosynthesis II
AFE_1900	PWY-5668	cardiolipin biosynthesis I
AFE_1900	PWY-7817	AFE_1900
AFE_1906	PWY-4381	fatty acid biosynthesis initiation I
AFE_1907	PWY-4381	fatty acid biosynthesis initiation I
AFE_1907	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AFE_1907	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFE_1908	PWY-5367	petroselinate biosynthesis
AFE_1908	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFE_1908	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFE_1908	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFE_1908	PWY-5994	palmitate biosynthesis I (animals and fungi)
AFE_1908	PWY-6113	superpathway of mycolate biosynthesis
AFE_1908	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFE_1908	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_1908	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFE_1908	PWY-7663	gondoate biosynthesis (anaerobic)
AFE_1908	PWY-7664	oleate biosynthesis IV (anaerobic)
AFE_1908	PWY-7858	AFE_1908
AFE_1908	PWYG-321	mycolate biosynthesis
AFE_1911	PWY-6543	4-aminobenzoate biosynthesis
AFE_1913	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_1913	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_1913	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_1913	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AFE_1913	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFE_1913	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFE_1928	PWY-2781	<i>cis</i>-zeatin biosynthesis
AFE_1929	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_1929	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AFE_1929	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_1929	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_1929	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AFE_1929	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFE_1929	PWY-7205	CMP phosphorylation
AFE_1929	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFE_1929	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_1929	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFE_1929	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_1929	PWY-7224	purine deoxyribonucleosides salvage
AFE_1929	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_1929	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFE_1960	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_1960	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_1969	PWY-5108	L-isoleucine biosynthesis V
AFE_1969	PWY-5132	humulone biosynthesis
AFE_1969	PWY-5133	cohumulone biosynthesis
AFE_1969	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AFE_1969	PWY-7118	chitin degradation to ethanol
AFE_1969	PWY-7857	AFE_1969
AFE_1972	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_1973	PWY-5663	tetrahydrobiopterin biosynthesis I
AFE_1973	PWY-5664	tetrahydrobiopterin biosynthesis II
AFE_1973	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AFE_1973	PWY-6703	preQ<sub>0</sub> biosynthesis
AFE_1973	PWY-6983	tetrahydrobiopterin biosynthesis III
AFE_1973	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AFE_1973	PWY-7852	AFE_1973
AFE_1974	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_1974	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_1974	PWY-7560	methylerythritol phosphate pathway II
AFE_1989	PWY-6871	3-methylbutanol biosynthesis
AFE_1994	PWY-6167	flavin biosynthesis II (archaea)
AFE_1994	PWY-6168	flavin biosynthesis III (fungi)
AFE_1999	PWY-6157	autoinducer AI-1 biosynthesis
AFE_2025	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AFE_2059	PWY-6700	queuosine biosynthesis
AFE_2060	PWY-6700	queuosine biosynthesis
AFE_2064	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_2064	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFE_2064	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFE_2064	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFE_2066	PWY-2161	folate polyglutamylation
AFE_2067	PWY-4381	fatty acid biosynthesis initiation I
AFE_2067	PWY-5743	3-hydroxypropanoate cycle
AFE_2067	PWY-5744	glyoxylate assimilation
AFE_2067	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFE_2067	PWY-6722	candicidin biosynthesis
AFE_2074	PWY-2941	L-lysine biosynthesis II
AFE_2074	PWY-2942	L-lysine biosynthesis III
AFE_2074	PWY-5097	L-lysine biosynthesis VI
AFE_2074	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_2074	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AFE_2074	PWY-6559	spermidine biosynthesis II
AFE_2074	PWY-6562	norspermidine biosynthesis
AFE_2074	PWY-7153	grixazone biosynthesis
AFE_2074	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_2074	PWY-7977	AFE_2074
AFE_2075	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AFE_2076	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AFE_2076	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
AFE_2078	PWY-6823	molybdenum cofactor biosynthesis
AFE_2081	PWY-2661	trehalose biosynthesis V
AFE_2082	PWY-2661	trehalose biosynthesis V
AFE_2088	PWY-3162	L-tryptophan degradation V (side chain pathway)
AFE_2088	PWY-5057	L-valine degradation II
AFE_2088	PWY-5076	L-leucine degradation III
AFE_2088	PWY-5078	L-isoleucine degradation II
AFE_2088	PWY-5079	L-phenylalanine degradation III
AFE_2088	PWY-5082	L-methionine degradation III
AFE_2088	PWY-5480	pyruvate fermentation to ethanol I
AFE_2088	PWY-5486	pyruvate fermentation to ethanol II
AFE_2088	PWY-5751	phenylethanol biosynthesis
AFE_2088	PWY-6313	serotonin degradation
AFE_2088	PWY-6333	acetaldehyde biosynthesis I
AFE_2088	PWY-6342	noradrenaline and adrenaline degradation
AFE_2088	PWY-6587	pyruvate fermentation to ethanol III
AFE_2088	PWY-6802	salidroside biosynthesis
AFE_2088	PWY-6871	3-methylbutanol biosynthesis
AFE_2088	PWY-7013	L-1,2-propanediol degradation
AFE_2088	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_2088	PWY-7118	chitin degradation to ethanol
AFE_2088	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AFE_2111	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFE_2121	PWY-5129	sphingolipid biosynthesis (plants)
AFE_2121	PWY-7836	AFE_2121
AFE_2121	PWY-7838	AFE_2121
AFE_2121	PWY-7839	AFE_2121
AFE_2121	PWY-7841	AFE_2121
AFE_2122	PWY-5152	leucodelphinidin biosynthesis
AFE_2124	PWY-6098	diploterol and cycloartenol biosynthesis
AFE_2124	PWY-7072	hopanoid biosynthesis (bacteria)
AFE_2126	PWY-5667	CDP-diacylglycerol biosynthesis I
AFE_2126	PWY-5981	CDP-diacylglycerol biosynthesis III
AFE_2126	PWY-7902	AFE_2126
AFE_2144	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_2144	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_2146	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AFE_2155	PWY-5532	adenosine nucleotides degradation IV
AFE_2155	PWY-5723	Rubisco shunt
AFE_2176	PWY-43	putrescine biosynthesis II
AFE_2206	PWY-5316	nicotine biosynthesis
AFE_2206	PWY-5381	pyridine nucleotide cycling (plants)
AFE_2206	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AFE_2206	PWY-7342	superpathway of nicotine biosynthesis
AFE_2222	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_2223	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_2223	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFE_2223	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_2223	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_2224	PWY-5941	glycogen degradation II (eukaryotic)
AFE_2254	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_2254	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_2254	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFE_2254	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_2254	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_2260	PWY-6123	inosine-5'-phosphate biosynthesis I
AFE_2260	PWY-6124	inosine-5'-phosphate biosynthesis II
AFE_2260	PWY-7234	inosine-5'-phosphate biosynthesis III
AFE_2261	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_2261	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFE_2261	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFE_2263	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFE_2264	PWY-5686	UMP biosynthesis
AFE_2278	PWY-7399	methylphosphonate degradation II
AFE_2278	PWY-7805	AFE_2278
AFE_2278	PWY-7807	AFE_2278
AFE_2281	PWY-7399	methylphosphonate degradation II
AFE_2281	PWY-7805	AFE_2281
AFE_2281	PWY-7807	AFE_2281
AFE_2283	PWY-7399	methylphosphonate degradation II
AFE_2283	PWY-7805	AFE_2283
AFE_2283	PWY-7807	AFE_2283
AFE_2284	PWY-7399	methylphosphonate degradation II
AFE_2284	PWY-7805	AFE_2284
AFE_2284	PWY-7807	AFE_2284
AFE_2285	PWY-7805	AFE_2285
AFE_2285	PWY-7807	AFE_2285
AFE_2324	PWY-6749	CMP-legionaminate biosynthesis I
AFE_2354	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_2354	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFE_2354	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFE_2355	PWY-6123	inosine-5'-phosphate biosynthesis I
AFE_2355	PWY-6124	inosine-5'-phosphate biosynthesis II
AFE_2355	PWY-7234	inosine-5'-phosphate biosynthesis III
AFE_2356	PWY-6123	inosine-5'-phosphate biosynthesis I
AFE_2356	PWY-6124	inosine-5'-phosphate biosynthesis II
AFE_2356	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_2356	PWY-7234	inosine-5'-phosphate biosynthesis III
AFE_2358	PWY-2941	L-lysine biosynthesis II
AFE_2358	PWY-2942	L-lysine biosynthesis III
AFE_2358	PWY-5097	L-lysine biosynthesis VI
AFE_2383	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AFE_2383	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AFE_2383	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AFE_2383	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AFE_2383	PWY-6978	plastoquinol-9 biosynthesis II
AFE_2464	PWY-3341	L-proline biosynthesis III
AFE_2464	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFE_2482	PWY-5941	glycogen degradation II (eukaryotic)
AFE_2526	PWY-43	putrescine biosynthesis II
AFE_2559	PWY-6823	molybdenum cofactor biosynthesis
AFE_2561	PWY-6823	molybdenum cofactor biosynthesis
AFE_2565	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_2565	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_2566	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_2566	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFE_2566	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_2566	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_2567	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_2567	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_2569	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AFE_2569	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AFE_2570	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AFE_2570	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AFE_2588	PWY-6700	queuosine biosynthesis
AFE_2596	PWY-6871	3-methylbutanol biosynthesis
AFE_2633	PWY-1042	glycolysis IV (plant cytosol)
AFE_2633	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_2633	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_2633	PWY-7003	glycerol degradation to butanol
AFE_2634	PWY-6749	CMP-legionaminate biosynthesis I
AFE_2635	PWY-6614	tetrahydrofolate biosynthesis
AFE_2638	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_2638	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_2638	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFE_2638	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFE_2638	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2638	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2638	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_2638	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFE_2639	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_2639	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_2639	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFE_2639	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFE_2639	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2639	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2639	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_2639	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFE_2663	PWY-2941	L-lysine biosynthesis II
AFE_2663	PWY-2942	L-lysine biosynthesis III
AFE_2663	PWY-5097	L-lysine biosynthesis VI
AFE_2671	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_2671	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFE_2673	PWY-5392	reductive TCA cycle II
AFE_2673	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFE_2673	PWY-5690	TCA cycle II (plants and fungi)
AFE_2673	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_2673	PWY-6728	methylaspartate cycle
AFE_2673	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFE_2673	PWY-7254	TCA cycle VII (acetate-producers)
AFE_2673	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFE_2678	PWY-622	starch biosynthesis
AFE_2718	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2718	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2718	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2719	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2719	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2719	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_2729	PWY-3781	aerobic respiration I (cytochrome c)
AFE_2729	PWY-6692	Fe(II) oxidation
AFE_2729	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AFE_2729	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFE_2743	PWY-2941	L-lysine biosynthesis II
AFE_2743	PWY-5097	L-lysine biosynthesis VI
AFE_2755	PWY-7851	AFE_2755
AFE_2761	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_2764	PWY-7560	methylerythritol phosphate pathway II
AFE_2815	PWY-7799	AFE_2815
AFE_2815	PWY-7800	AFE_2815
AFE_2818	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_2825	PWY-6902	chitin degradation II
AFE_2825	PWY-7822	AFE_2825
AFE_2825	PWY-7883	AFE_2825
AFE_2832	PWY-6936	seleno-amino acid biosynthesis
AFE_2833	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFE_2833	PWY-6855	chitin degradation I (archaea)
AFE_2833	PWY-6906	chitin derivatives degradation
AFE_2836	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AFE_2836	PWY-622	starch biosynthesis
AFE_2836	PWY-7900	AFE_2836
AFE_2838	PWY-622	starch biosynthesis
AFE_2838	PWY-7902	AFE_2838
AFE_2842	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_2842	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_2853	PWY-6829	tRNA methylation (yeast)
AFE_2853	PWY-7285	methylwyosine biosynthesis
AFE_2853	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AFE_2923	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_2923	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_2924	PWY-3801	sucrose degradation II (sucrose synthase)
AFE_2924	PWY-5054	sorbitol biosynthesis I
AFE_2924	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AFE_2924	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFE_2924	PWY-5659	GDP-mannose biosynthesis
AFE_2924	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_2924	PWY-621	sucrose degradation III (sucrose invertase)
AFE_2924	PWY-622	starch biosynthesis
AFE_2924	PWY-6981	chitin biosynthesis
AFE_2924	PWY-6992	1,5-anhydrofructose degradation
AFE_2924	PWY-7238	sucrose biosynthesis II
AFE_2924	PWY-7347	sucrose biosynthesis III
AFE_2924	PWY-7385	1,3-propanediol biosynthesis (engineered)
AFE_2948	PWY-5381	pyridine nucleotide cycling (plants)
AFE_2948	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AFE_2948	PWY-7761	AFE_2948
AFE_2960	PWY-5659	GDP-mannose biosynthesis
AFE_2960	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AFE_2970	PWY-5278	sulfite oxidation III
AFE_2970	PWY-5340	sulfate activation for sulfonation
AFE_2970	PWY-6683	sulfate reduction III (assimilatory)
AFE_2970	PWY-6932	selenate reduction
AFE_2971	PWY-5278	sulfite oxidation III
AFE_2971	PWY-5340	sulfate activation for sulfonation
AFE_2971	PWY-6683	sulfate reduction III (assimilatory)
AFE_2971	PWY-6932	selenate reduction
AFE_2977	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
AFE_2977	PWY-5739	GDP-D-perosamine biosynthesis
AFE_2977	PWY-5740	GDP-L-colitose biosynthesis
AFE_2977	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AFE_2977	PWY-7573	GDP-mycosamine biosynthesis
AFE_3029	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_3029	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFE_3039	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_3039	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_3039	PWY-7953	AFE_3039
AFE_3051	PWY-5532	adenosine nucleotides degradation IV
AFE_3051	PWY-5723	Rubisco shunt
AFE_3052	PWY-5532	adenosine nucleotides degradation IV
AFE_3052	PWY-5723	Rubisco shunt
AFE_3059	PWY-5686	UMP biosynthesis
AFE_3059	PWY-7790	AFE_3059
AFE_3059	PWY-7791	AFE_3059
AFE_3073	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_3073	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_3089	PWY-5155	&beta;-alanine biosynthesis III
AFE_3097	PWY-702	L-methionine biosynthesis II
AFE_3109	PWY-3781	aerobic respiration I (cytochrome c)
AFE_3109	PWY-6692	Fe(II) oxidation
AFE_3109	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AFE_3109	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFE_3121	PWY-6683	sulfate reduction III (assimilatory)
AFE_3122	PWY-6683	sulfate reduction III (assimilatory)
AFE_3124	PWY-5278	sulfite oxidation III
AFE_3124	PWY-5340	sulfate activation for sulfonation
AFE_3124	PWY-6683	sulfate reduction III (assimilatory)
AFE_3124	PWY-6932	selenate reduction
AFE_3125	PWY-5278	sulfite oxidation III
AFE_3125	PWY-5340	sulfate activation for sulfonation
AFE_3125	PWY-6683	sulfate reduction III (assimilatory)
AFE_3125	PWY-6932	selenate reduction
AFE_3126	PWY-5194	siroheme biosynthesis
AFE_3126	PWY-5196	factor 430 biosynthesis
AFE_3126	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AFE_3127	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AFE_3149	PWY-3781	aerobic respiration I (cytochrome c)
AFE_3149	PWY-4521	arsenite oxidation I (respiratory)
AFE_3149	PWY-6692	Fe(II) oxidation
AFE_3149	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFE_3163	PWY-3461	L-tyrosine biosynthesis II
AFE_3163	PWY-3462	L-phenylalanine biosynthesis II
AFE_3163	PWY-6120	L-tyrosine biosynthesis III
AFE_3163	PWY-6627	salinosporamide A biosynthesis
AFE_3163	PWY-7626	bacilysin biosynthesis
AFE_3172	PWY-5386	methylglyoxal degradation I
AFE_3200	PWY-6749	CMP-legionaminate biosynthesis I
AFE_3201	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFE_3203	PWY-7980	AFE_3203
AFE_3205	PWY-7980	AFE_3205
AFE_3223	PWY-7731	AFE_3223
AFE_3244	PWY-5958	acridone alkaloid biosynthesis
AFE_3244	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFE_3244	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFE_3245	PWY-5958	acridone alkaloid biosynthesis
AFE_3245	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFE_3245	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFE_3246	PWY-181	photorespiration
AFE_3247	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_3247	PWY-5723	Rubisco shunt
AFE_3248	PWY-1042	glycolysis IV (plant cytosol)
AFE_3248	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_3248	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_3248	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_3248	PWY-7385	1,3-propanediol biosynthesis (engineered)
AFE_3249	PWY-1042	glycolysis IV (plant cytosol)
AFE_3249	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_3249	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_3249	PWY-5723	Rubisco shunt
AFE_3249	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_3249	PWY-6886	1-butanol autotrophic biosynthesis
AFE_3249	PWY-6901	superpathway of glucose and xylose degradation
AFE_3249	PWY-7003	glycerol degradation to butanol
AFE_3249	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_3249	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_3250	PWY-1042	glycolysis IV (plant cytosol)
AFE_3250	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_3250	PWY-6886	1-butanol autotrophic biosynthesis
AFE_3250	PWY-6901	superpathway of glucose and xylose degradation
AFE_3250	PWY-7003	glycerol degradation to butanol
AFE_3251	PWY-1042	glycolysis IV (plant cytosol)
AFE_3251	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_3251	PWY-6901	superpathway of glucose and xylose degradation
AFE_3251	PWY-7003	glycerol degradation to butanol
AFE_3252	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_3252	PWY-5723	Rubisco shunt
AFE_3252	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_3252	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_3252	PWY-6901	superpathway of glucose and xylose degradation
AFE_3252	PWY-7560	methylerythritol phosphate pathway II
AFE_3253	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_3258	PWY-7560	methylerythritol phosphate pathway II
AFE_3277	PWY-4983	L-citrulline-nitric oxide cycle
AFE_3277	PWY-4984	urea cycle
AFE_3277	PWY-5	canavanine biosynthesis
AFE_3277	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_3277	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_3279	PWY-2941	L-lysine biosynthesis II
AFE_3279	PWY-2942	L-lysine biosynthesis III
AFE_3279	PWY-5097	L-lysine biosynthesis VI
AFE_3292	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
AFE_3292	PWY-5739	GDP-D-perosamine biosynthesis
AFE_3292	PWY-5740	GDP-L-colitose biosynthesis
AFE_3292	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AFE_3292	PWY-7573	GDP-mycosamine biosynthesis
AFE_3293	PWY-5659	GDP-mannose biosynthesis
AFE_3293	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AFE_3295	PWY-3221	dTDP-L-rhamnose biosynthesis II
AFE_3295	PWY-6808	dTDP-D-forosamine biosynthesis
AFE_3295	PWY-6942	dTDP-D-desosamine biosynthesis
AFE_3295	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AFE_3295	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AFE_3295	PWY-6974	dTDP-L-olivose biosynthesis
AFE_3295	PWY-6976	dTDP-L-mycarose biosynthesis
AFE_3295	PWY-7104	dTDP-L-megosamine biosynthesis
AFE_3295	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AFE_3295	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AFE_3295	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AFE_3295	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AFE_3295	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AFE_3295	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AFE_3295	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AFE_3295	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AFE_3295	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AFE_3295	PWY-7688	AFE_3295
AFE_3295	PWY-7814	AFE_3295
AFE_3298	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_3298	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFE_3299	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_3299	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFE_3300	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_3300	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFE_3303	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_3304	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFE_3304	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFE_3304	PWY-6897	thiamin salvage II
AFE_3304	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AFE_3304	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AFE_3304	PWY-7356	thiamin salvage IV (yeast)
AFE_3304	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
