AFE_0001 SM00480 DNA polymerase III beta subunit AFE_0003 SM00387 Histidine kinase-like ATPases AFE_0003 SM00433 TopoisomeraseII AFE_0005 SM00972 Spore Coat Protein U domain AFE_0008 SM00972 Spore Coat Protein U domain AFE_0015 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFE_0015 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFE_0015 SM00493 AFE_0015 AFE_0018 SM00257 Lysin motif AFE_0023 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_0023 SM00387 Histidine kinase-like ATPases AFE_0023 SM00388 His Kinase A (phosphoacceptor) domain AFE_0024 SM00448 cheY-homologous receiver domain AFE_0026 SM00387 Histidine kinase-like ATPases AFE_0026 SM00388 His Kinase A (phosphoacceptor) domain AFE_0027 SM00382 ATPases associated with a variety of cellular activities AFE_0027 SM00448 cheY-homologous receiver domain AFE_0029 SM00564 beta-propeller repeat AFE_0033 SM01234 AFE_0033 AFE_0036 SM00382 ATPases associated with a variety of cellular activities AFE_0045 SM00450 Rhodanese Homology Domain AFE_0046 SM00450 Rhodanese Homology Domain AFE_0055 SM00834 Putative regulatory protein AFE_0058 SM00563 Phosphate acyltransferases AFE_0061 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_0062 SM00382 ATPases associated with a variety of cellular activities AFE_0101 SM00382 ATPases associated with a variety of cellular activities AFE_0106 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_0106 SM00387 Histidine kinase-like ATPases AFE_0106 SM00388 His Kinase A (phosphoacceptor) domain AFE_0107 SM00448 cheY-homologous receiver domain AFE_0107 SM00862 Transcriptional regulatory protein, C terminal AFE_0117 SM00671 Sel1-like repeats. AFE_0119 SM00419 helix_turn_helix, cAMP Regulatory protein AFE_0124 SM00028 Tetratricopeptide repeats AFE_0125 SM01207 AFE_0125 AFE_0126 SM00905 Dihydroneopterin aldolase AFE_0127 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_0134 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_0151 SM00450 Rhodanese Homology Domain AFE_0155 SM00855 Phosphoglycerate mutase family AFE_0158 SM00382 ATPases associated with a variety of cellular activities AFE_0163 SM00382 ATPases associated with a variety of cellular activities AFE_0164 SM00363 S4 RNA-binding domain AFE_0166 SM00507 HNH nucleases AFE_0167 SM00650 Ribosomal RNA adenine dimethylases AFE_0170 SM00836 DALR anticodon binding domain AFE_0170 SM01016 Arginyl tRNA synthetase N terminal dom AFE_0183 SM00382 ATPases associated with a variety of cellular activities AFE_0184 SM00387 Histidine kinase-like ATPases AFE_0184 SM00388 His Kinase A (phosphoacceptor) domain AFE_0185 SM00382 ATPases associated with a variety of cellular activities AFE_0185 SM00448 cheY-homologous receiver domain AFE_0195 SM00878 Biotin carboxylase C-terminal domain AFE_0200 SM00864 Tubulin/FtsZ family, GTPase domain AFE_0200 SM00865 Tubulin/FtsZ family, C-terminal domain AFE_0201 SM00842 Cell division protein FtsA AFE_0225 SM00957 SecA DEAD-like domain AFE_0225 SM00958 SecA preprotein cross-linking domain AFE_0251 SM00479 AFE_0251 AFE_0259 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_0259 SM00876 Biotin and Thiamin Synthesis associated domain AFE_0260 SM01152 AFE_0260 AFE_0264 SM00382 ATPases associated with a variety of cellular activities AFE_0269 SM00849 Metallo-beta-lactamase superfamily AFE_0270 SM00100 Cyclic nucleotide-monophosphate binding domain AFE_0270 SM00419 helix_turn_helix, cAMP Regulatory protein AFE_0272 SM01001 AIR carboxylase AFE_0278 SM00155 Phospholipase D. Active site motifs. AFE_0281 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFE_0287 SM00947 Carbonic anhydrase AFE_0303 SM00671 Sel1-like repeats. AFE_0314 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AFE_0314 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFE_0315 SM00649 Ribosomal protein L11/L12 AFE_0321 SM00663 RNA polymerase I subunit A N-terminus AFE_0324 SM00838 Elongation factor G C-terminus AFE_0324 SM00889 Elongation factor G, domain IV AFE_0326 SM01403 AFE_0326 AFE_0330 SM01382 AFE_0330 AFE_0330 SM01383 AFE_0330 AFE_0333 SM00322 K homology RNA-binding domain AFE_0337 SM01374 AFE_0337 AFE_0338 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFE_0349 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_0353 SM00363 S4 RNA-binding domain AFE_0353 SM01390 AFE_0353 AFE_0354 SM00662 RNA polymerases D AFE_0360 SM00014 Acid phosphatase homologues AFE_0369 SM00487 DEAD-like helicases superfamily AFE_0369 SM00490 helicase superfamily c-terminal domain AFE_0369 SM00982 AFE_0369 AFE_0369 SM01058 CarD-like/TRCF domain AFE_0373 SM00422 helix_turn_helix, mercury resistance AFE_0374 SM00463 Small MutS-related domain AFE_0379 SM00382 ATPases associated with a variety of cellular activities AFE_0390 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_0394 SM01387 AFE_0394 AFE_0395 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_0395 SM00322 K homology RNA-binding domain AFE_0397 SM00849 Metallo-beta-lactamase superfamily AFE_0400 SM00479 AFE_0400 AFE_0401 SM00960 Roadblock/LC7 domain AFE_0409 SM00671 Sel1-like repeats. AFE_0421 SM00257 Lysin motif AFE_0424 SM01329 AFE_0424 AFE_0427 SM00881 CoA binding domain AFE_0429 SM00938 Nitrogen regulatory protein P-II AFE_0431 SM00363 S4 RNA-binding domain AFE_0436 SM01007 Class II Aldolase and Adducin N-terminal domain AFE_0447 SM00382 ATPases associated with a variety of cellular activities AFE_0447 SM00448 cheY-homologous receiver domain AFE_0449 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_0449 SM00387 Histidine kinase-like ATPases AFE_0449 SM00388 His Kinase A (phosphoacceptor) domain AFE_0461 SM00867 YceI-like domain AFE_0463 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFE_0463 SM01232 AFE_0463 AFE_0466 SM01230 AFE_0466 AFE_0477 SM00966 SpoVT / AbrB like domain AFE_0483 SM00382 ATPases associated with a variety of cellular activities AFE_0518 SM00986 Uracil DNA glycosylase superfamily AFE_0518 SM00987 UreE urease accessory protein, C-terminal domain AFE_0520 SM00382 ATPases associated with a variety of cellular activities AFE_0520 SM01086 C-terminal, D2-small domain, of ClpB protein AFE_0524 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_0524 SM00245 tail specific protease AFE_0529 SM00450 Rhodanese Homology Domain AFE_0534 SM00996 S-adenosyl-L-homocysteine hydrolase AFE_0534 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFE_0537 SM00014 Acid phosphatase homologues AFE_0543 SM00883 Chaperonin 10 Kd subunit AFE_0552 SM00382 ATPases associated with a variety of cellular activities AFE_0557 SM00904 Riboflavin kinase AFE_0563 SM00072 Guanylate kinase homologues. AFE_0564 SM01409 AFE_0564 AFE_0565 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFE_0565 SM00954 Region found in RelA / SpoT proteins AFE_0568 SM00487 DEAD-like helicases superfamily AFE_0568 SM00490 helicase superfamily c-terminal domain AFE_0589 SM00487 DEAD-like helicases superfamily AFE_0589 SM00490 helicase superfamily c-terminal domain AFE_0590 SM00357 Cold shock protein domain AFE_0591 SM00487 DEAD-like helicases superfamily AFE_0591 SM00490 helicase superfamily c-terminal domain AFE_0596 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_0599 SM00116 Domain in cystathionine beta-synthase and other proteins. AFE_0599 SM01091 Transporter associated domain AFE_0603 SM00382 ATPases associated with a variety of cellular activities AFE_0617 SM00382 ATPases associated with a variety of cellular activities AFE_0618 SM00984 UDP binding domain AFE_0621 SM00855 Phosphoglycerate mutase family AFE_0622 SM00530 Helix-turn-helix XRE-family like proteins AFE_0639 SM00851 MGS-like domain AFE_0639 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFE_0640 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFE_0646 SM00382 ATPases associated with a variety of cellular activities AFE_0650 SM00769 Water Stress and Hypersensitive response AFE_0655 SM00382 ATPases associated with a variety of cellular activities AFE_0658 SM00357 Cold shock protein domain AFE_0658 SM00382 ATPases associated with a variety of cellular activities AFE_0658 SM00959 Rho termination factor, N-terminal domain AFE_0660 SM00919 Malic enzyme, NAD binding domain AFE_0660 SM01274 AFE_0660 AFE_0668 SM00382 ATPases associated with a variety of cellular activities AFE_0683 SM00487 DEAD-like helicases superfamily AFE_0693 SM00382 ATPases associated with a variety of cellular activities AFE_0700 SM00382 ATPases associated with a variety of cellular activities AFE_0727 SM00563 Phosphate acyltransferases AFE_0731 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFE_0735 SM00965 Secretin and TonB N terminus short domain AFE_0744 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFE_0744 SM00534 ATPase domain of DNA mismatch repair MUTS family AFE_0757 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_0757 SM00292 breast cancer carboxy-terminal domain AFE_0757 SM00532 Ligase N family AFE_0775 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFE_0777 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFE_0790 SM00563 Phosphate acyltransferases AFE_0793 SM00822 AFE_0793 AFE_0796 SM00825 Beta-ketoacyl synthase AFE_0808 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFE_0809 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFE_0818 SM00831 Cation transporter/ATPase, N-terminus AFE_0837 SM00382 ATPases associated with a variety of cellular activities AFE_0841 SM00487 DEAD-like helicases superfamily AFE_0845 SM00487 DEAD-like helicases superfamily AFE_0845 SM00490 helicase superfamily c-terminal domain AFE_0846 SM00829 Enoylreductase AFE_0849 SM01192 AFE_0849 AFE_0849 SM01193 AFE_0849 AFE_0851 SM00841 Elongation factor P, C-terminal AFE_0851 SM01185 AFE_0851 AFE_0853 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_0853 SM00465 GIY-YIG type nucleases (URI domain) AFE_0857 SM00100 Cyclic nucleotide-monophosphate binding domain AFE_0857 SM00419 helix_turn_helix, cAMP Regulatory protein AFE_0859 SM01353 AFE_0859 AFE_0872 SM00382 ATPases associated with a variety of cellular activities AFE_0872 SM00464 Found in ATP-dependent protease La (LON) AFE_0894 SM00434 DNA Topoisomerase IV AFE_0897 SM00830 Chorismate mutase type II AFE_0903 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_0905 SM00411 bacterial (prokaryotic) histone like domain AFE_0907 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AFE_0911 SM00382 ATPases associated with a variety of cellular activities AFE_0911 SM00994 ClpX C4-type zinc finger AFE_0911 SM01086 C-terminal, D2-small domain, of ClpB protein AFE_0912 SM00382 ATPases associated with a variety of cellular activities AFE_0912 SM00464 Found in ATP-dependent protease La (LON) AFE_0914 SM00411 bacterial (prokaryotic) histone like domain AFE_0918 SM00014 Acid phosphatase homologues AFE_0924 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFE_0932 SM00382 ATPases associated with a variety of cellular activities AFE_0934 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFE_0942 SM00487 DEAD-like helicases superfamily AFE_0942 SM00490 helicase superfamily c-terminal domain AFE_0945 SM00382 ATPases associated with a variety of cellular activities AFE_0956 SM00849 Metallo-beta-lactamase superfamily AFE_0957 SM00382 ATPases associated with a variety of cellular activities AFE_0978 SM00960 Roadblock/LC7 domain AFE_0983 SM00382 ATPases associated with a variety of cellular activities AFE_0987 SM00481 DNA polymerase alpha chain like domain AFE_0991 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFE_0993 SM00849 Metallo-beta-lactamase superfamily AFE_0998 SM00530 Helix-turn-helix XRE-family like proteins AFE_1000 SM01040 BRO family, N-terminal domain AFE_1013 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFE_1013 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFE_1013 SM00493 AFE_1013 AFE_1023 SM00507 HNH nucleases AFE_1033 SM00857 Resolvase, N terminal domain AFE_1047 SM00382 ATPases associated with a variety of cellular activities AFE_1057 SM00028 Tetratricopeptide repeats AFE_1070 SM00411 bacterial (prokaryotic) histone like domain AFE_1072 SM00953 AFE_1072 AFE_1073 SM01040 BRO family, N-terminal domain AFE_1098 SM00966 SpoVT / AbrB like domain AFE_1105 SM00857 Resolvase, N terminal domain AFE_1130 SM00843 AFE_1130 AFE_1152 SM00507 HNH nucleases AFE_1206 SM01043 Bacterial transcriptional activator domain AFE_1208 SM00869 Autotransporter beta-domain AFE_1209 SM00869 Autotransporter beta-domain AFE_1210 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AFE_1211 SM00028 Tetratricopeptide repeats AFE_1217 SM00986 Uracil DNA glycosylase superfamily AFE_1217 SM00987 UreE urease accessory protein, C-terminal domain AFE_1229 SM00052 Putative diguanylate phosphodiesterase AFE_1230 SM00292 breast cancer carboxy-terminal domain AFE_1230 SM00532 Ligase N family AFE_1241 SM00411 bacterial (prokaryotic) histone like domain AFE_1254 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFE_1258 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFE_1304 SM00422 helix_turn_helix, mercury resistance AFE_1304 SM00857 Resolvase, N terminal domain AFE_1338 SM00014 Acid phosphatase homologues AFE_1343 SM00984 UDP binding domain AFE_1360 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AFE_1364 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AFE_1365 SM00507 HNH nucleases AFE_1371 SM00487 DEAD-like helicases superfamily AFE_1371 SM00490 helicase superfamily c-terminal domain AFE_1373 SM00382 ATPases associated with a variety of cellular activities AFE_1378 SM00857 Resolvase, N terminal domain AFE_1383 SM00530 Helix-turn-helix XRE-family like proteins AFE_1387 SM00897 FIST N domain AFE_1387 SM01204 AFE_1387 AFE_1388 SM00382 ATPases associated with a variety of cellular activities AFE_1390 SM00382 ATPases associated with a variety of cellular activities AFE_1396 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_1397 SM00838 Elongation factor G C-terminus AFE_1400 SM00358 Double-stranded RNA binding motif AFE_1400 SM00535 Ribonuclease III family AFE_1405 SM00984 UDP binding domain AFE_1431 SM00422 helix_turn_helix, mercury resistance AFE_1433 SM00487 DEAD-like helicases superfamily AFE_1433 SM00490 helicase superfamily c-terminal domain AFE_1434 SM00448 cheY-homologous receiver domain AFE_1434 SM00862 Transcriptional regulatory protein, C terminal AFE_1435 SM00387 Histidine kinase-like ATPases AFE_1435 SM00388 His Kinase A (phosphoacceptor) domain AFE_1439 SM00382 ATPases associated with a variety of cellular activities AFE_1451 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_1453 SM00935 Outer membrane protein (OmpH-like) AFE_1461 SM00481 DNA polymerase alpha chain like domain AFE_1464 SM00977 TilS substrate C-terminal domain AFE_1469 SM00670 Large family of predicted nucleotide-binding domains AFE_1479 SM00893 Electron transfer flavoprotein domain AFE_1480 SM00893 Electron transfer flavoprotein domain AFE_1491 SM00382 ATPases associated with a variety of cellular activities AFE_1499 SM00382 ATPases associated with a variety of cellular activities AFE_1501 SM00834 Putative regulatory protein AFE_1502 SM00248 ankyrin repeats AFE_1502 SM00450 Rhodanese Homology Domain AFE_1527 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFE_1527 SM00382 ATPases associated with a variety of cellular activities AFE_1563 SM00530 Helix-turn-helix XRE-family like proteins AFE_1566 SM00382 ATPases associated with a variety of cellular activities AFE_1575 SM00487 DEAD-like helicases superfamily AFE_1583 SM00411 bacterial (prokaryotic) histone like domain AFE_1584 SM00411 bacterial (prokaryotic) histone like domain AFE_1591 SM00563 Phosphate acyltransferases AFE_1605 SM00382 ATPases associated with a variety of cellular activities AFE_1606 SM00382 ATPases associated with a variety of cellular activities AFE_1631 SM00530 Helix-turn-helix XRE-family like proteins AFE_1638 SM00382 ATPases associated with a variety of cellular activities AFE_1646 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_1658 SM00100 Cyclic nucleotide-monophosphate binding domain AFE_1658 SM00419 helix_turn_helix, cAMP Regulatory protein AFE_1667 SM00861 Transketolase, pyrimidine binding domain AFE_1668 SM00346 helix_turn_helix isocitrate lyase regulation AFE_1677 SM00327 von Willebrand factor (vWF) type A domain AFE_1683 SM00877 AFE_1683 AFE_1684 SM00877 AFE_1684 AFE_1685 SM00877 AFE_1685 AFE_1690 SM00961 Ribulose bisphosphate carboxylase, small chain AFE_1707 SM00052 Putative diguanylate phosphodiesterase AFE_1707 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFE_1707 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFE_1707 SM00091 PAS domain AFE_1707 SM00267 diguanylate cyclase AFE_1712 SM00052 Putative diguanylate phosphodiesterase AFE_1712 SM00267 diguanylate cyclase AFE_1719 SM00470 ParB-like nuclease domain AFE_1725 SM00052 Putative diguanylate phosphodiesterase AFE_1725 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFE_1725 SM00091 PAS domain AFE_1725 SM00267 diguanylate cyclase AFE_1738 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFE_1738 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFE_1738 SM00493 AFE_1738 AFE_1740 SM00155 Phospholipase D. Active site motifs. AFE_1741 SM00382 ATPases associated with a variety of cellular activities AFE_1754 SM00530 Helix-turn-helix XRE-family like proteins AFE_1760 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFE_1760 SM00534 ATPase domain of DNA mismatch repair MUTS family AFE_1767 SM00479 AFE_1767 AFE_1777 SM00116 Domain in cystathionine beta-synthase and other proteins. AFE_1777 SM01240 AFE_1777 AFE_1781 SM00966 SpoVT / AbrB like domain AFE_1783 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFE_1793 SM00363 S4 RNA-binding domain AFE_1794 SM00478 endonuclease III AFE_1800 SM01192 AFE_1800 AFE_1802 SM01133 AFE_1802 AFE_1812 SM00861 Transketolase, pyrimidine binding domain AFE_1843 SM00861 Transketolase, pyrimidine binding domain AFE_1848 SM00478 endonuclease III AFE_1874 SM00880 AFE_1874 AFE_1874 SM01118 AFE_1874 AFE_1886 SM00244 prohibitin homologues AFE_1887 SM00244 prohibitin homologues AFE_1889 SM00788 Adenylosuccinate synthetase AFE_1891 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_1891 SM00357 Cold shock protein domain AFE_1891 SM00955 AFE_1891 AFE_1894 SM00852 Probable molybdopterin binding domain AFE_1907 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFE_1908 SM00822 AFE_1908 AFE_1909 SM00823 Phosphopantetheine attachment site AFE_1910 SM00825 Beta-ketoacyl synthase AFE_1919 SM00382 ATPases associated with a variety of cellular activities AFE_1921 SM00493 AFE_1921 AFE_1925 SM00116 Domain in cystathionine beta-synthase and other proteins. AFE_1927 SM00853 MutL C terminal dimerisation domain AFE_1927 SM01340 AFE_1927 AFE_1929 SM00562 AFE_1929 AFE_1931 SM00028 Tetratricopeptide repeats AFE_1932 SM00530 Helix-turn-helix XRE-family like proteins AFE_1936 SM00564 beta-propeller repeat AFE_1970 SM00382 ATPases associated with a variety of cellular activities AFE_1970 SM01086 C-terminal, D2-small domain, of ClpB protein AFE_1974 SM00861 Transketolase, pyrimidine binding domain AFE_1981 SM00564 beta-propeller repeat AFE_1988 SM00831 Cation transporter/ATPase, N-terminus AFE_1989 SM00917 LeuA allosteric (dimerisation) domain AFE_1990 SM00344 helix_turn_helix ASNC type AFE_1997 SM00421 helix_turn_helix, Lux Regulon AFE_2013 SM00347 helix_turn_helix multiple antibiotic resistance protein AFE_2024 SM01350 AFE_2024 AFE_2026 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_2028 SM00434 DNA Topoisomerase IV AFE_2029 SM00387 Histidine kinase-like ATPases AFE_2029 SM00433 TopoisomeraseII AFE_2031 SM00387 Histidine kinase-like ATPases AFE_2031 SM00388 His Kinase A (phosphoacceptor) domain AFE_2032 SM00448 cheY-homologous receiver domain AFE_2032 SM00862 Transcriptional regulatory protein, C terminal AFE_2058 SM01323 AFE_2058 AFE_2061 SM01091 Transporter associated domain AFE_2074 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFE_2075 SM01329 AFE_2075 AFE_2078 SM00852 Probable molybdopterin binding domain AFE_2081 SM00642 Alpha-amylase domain AFE_2082 SM00642 Alpha-amylase domain AFE_2105 SM00382 ATPases associated with a variety of cellular activities AFE_2110 SM00845 GatB domain AFE_2120 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_2138 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_2148 SM00530 Helix-turn-helix XRE-family like proteins AFE_2157 SM00327 von Willebrand factor (vWF) type A domain AFE_2167 SM00382 ATPases associated with a variety of cellular activities AFE_2175 SM00363 S4 RNA-binding domain AFE_2177 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFE_2185 SM00347 helix_turn_helix multiple antibiotic resistance protein AFE_2189 SM00382 ATPases associated with a variety of cellular activities AFE_2194 SM00341 Helicase and RNase D C-terminal AFE_2194 SM00487 DEAD-like helicases superfamily AFE_2194 SM00490 helicase superfamily c-terminal domain AFE_2194 SM00956 AFE_2194 AFE_2195 SM01219 AFE_2195 AFE_2219 SM00363 S4 RNA-binding domain AFE_2220 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_2221 SM00840 AFE_2221 AFE_2228 SM00448 cheY-homologous receiver domain AFE_2228 SM00862 Transcriptional regulatory protein, C terminal AFE_2229 SM00387 Histidine kinase-like ATPases AFE_2229 SM00388 His Kinase A (phosphoacceptor) domain AFE_2240 SM00938 Nitrogen regulatory protein P-II AFE_2251 SM00564 beta-propeller repeat AFE_2253 SM01359 AFE_2253 AFE_2253 SM01360 AFE_2253 AFE_2255 SM00960 Roadblock/LC7 domain AFE_2256 SM00849 Metallo-beta-lactamase superfamily AFE_2260 SM00798 AICARFT/IMPCHase bienzyme AFE_2260 SM00851 MGS-like domain AFE_2261 SM01209 AFE_2261 AFE_2261 SM01210 AFE_2261 AFE_2271 SM00862 Transcriptional regulatory protein, C terminal AFE_2282 SM00382 ATPases associated with a variety of cellular activities AFE_2283 SM00382 ATPases associated with a variety of cellular activities AFE_2287 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFE_2287 SM00866 AFE_2287 AFE_2306 SM00862 Transcriptional regulatory protein, C terminal AFE_2314 SM00855 Phosphoglycerate mutase family AFE_2318 SM00387 Histidine kinase-like ATPases AFE_2318 SM00388 His Kinase A (phosphoacceptor) domain AFE_2319 SM00448 cheY-homologous receiver domain AFE_2319 SM00862 Transcriptional regulatory protein, C terminal AFE_2320 SM00479 AFE_2320 AFE_2327 SM00831 Cation transporter/ATPase, N-terminus AFE_2337 SM00400 zinc finger AFE_2337 SM00493 AFE_2337 AFE_2338 SM00463 Small MutS-related domain AFE_2338 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFE_2338 SM00534 ATPase domain of DNA mismatch repair MUTS family AFE_2344 SM00100 Cyclic nucleotide-monophosphate binding domain AFE_2345 SM00464 Found in ATP-dependent protease La (LON) AFE_2346 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_2354 SM01211 AFE_2354 AFE_2356 SM00998 Adenylosuccinate lyase C-terminus AFE_2358 SM01130 AFE_2358 AFE_2361 SM00646 AFE_2361 AFE_2364 SM00450 Rhodanese Homology Domain AFE_2369 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_2375 SM00487 DEAD-like helicases superfamily AFE_2375 SM00490 helicase superfamily c-terminal domain AFE_2381 SM00487 DEAD-like helicases superfamily AFE_2408 SM00487 DEAD-like helicases superfamily AFE_2413 SM00382 ATPases associated with a variety of cellular activities AFE_2421 SM00422 helix_turn_helix, mercury resistance AFE_2462 SM00938 Nitrogen regulatory protein P-II AFE_2471 SM00411 bacterial (prokaryotic) histone like domain AFE_2509 SM00422 helix_turn_helix, mercury resistance AFE_2513 SM00671 Sel1-like repeats. AFE_2517 SM00487 DEAD-like helicases superfamily AFE_2517 SM00491 AFE_2517 AFE_2523 SM00899 AFE_2523 AFE_2535 SM00327 von Willebrand factor (vWF) type A domain AFE_2543 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_2546 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_2558 SM00450 Rhodanese Homology Domain AFE_2559 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_2567 SM00936 Penicillin-binding protein 5, C-terminal domain AFE_2570 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_2578 SM00960 Roadblock/LC7 domain AFE_2584 SM00563 Phosphate acyltransferases AFE_2589 SM00644 AFE_2589 AFE_2596 SM00917 LeuA allosteric (dimerisation) domain AFE_2597 SM00382 ATPases associated with a variety of cellular activities AFE_2604 SM00382 ATPases associated with a variety of cellular activities AFE_2607 SM00422 helix_turn_helix, mercury resistance AFE_2608 SM00411 bacterial (prokaryotic) histone like domain AFE_2609 SM00873 B3/4 domain AFE_2609 SM00874 tRNA synthetase B5 domain AFE_2609 SM00896 Ferredoxin-fold anticodon binding domain AFE_2614 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFE_2624 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFE_2624 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFE_2625 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFE_2636 SM00382 ATPases associated with a variety of cellular activities AFE_2641 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_2644 SM00849 Metallo-beta-lactamase superfamily AFE_2664 SM00271 DnaJ molecular chaperone homology domain AFE_2679 SM00849 Metallo-beta-lactamase superfamily AFE_2679 SM01027 Beta-Casp domain AFE_2681 SM00028 Tetratricopeptide repeats AFE_2682 SM00478 endonuclease III AFE_2686 SM00671 Sel1-like repeats. AFE_2693 SM00382 ATPases associated with a variety of cellular activities AFE_2696 SM00382 ATPases associated with a variety of cellular activities AFE_2705 SM00858 AFE_2705 AFE_2716 SM00028 Tetratricopeptide repeats AFE_2737 SM01103 AFE_2737 AFE_2748 SM00382 ATPases associated with a variety of cellular activities AFE_2748 SM01086 C-terminal, D2-small domain, of ClpB protein AFE_2752 SM00382 ATPases associated with a variety of cellular activities AFE_2753 SM00382 ATPases associated with a variety of cellular activities AFE_2753 SM00962 SRP54-type protein, GTPase domain AFE_2753 SM00963 SRP54-type protein, helical bundle domain AFE_2758 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFE_2758 SM01232 AFE_2758 AFE_2760 SM00937 AFE_2760 AFE_2762 SM00028 Tetratricopeptide repeats AFE_2766 SM01400 AFE_2766 AFE_2771 SM00966 SpoVT / AbrB like domain AFE_2790 SM00487 DEAD-like helicases superfamily AFE_2794 SM00974 AFE_2794 AFE_2796 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_2799 SM00342 helix_turn_helix, arabinose operon control protein AFE_2799 SM00478 endonuclease III AFE_2799 SM01009 AlkA N-terminal domain AFE_2815 SM01011 Aminopeptidase P, N-terminal domain AFE_2817 SM00382 ATPases associated with a variety of cellular activities AFE_2818 SM01005 Alanine racemase, C-terminal domain AFE_2819 SM00382 ATPases associated with a variety of cellular activities AFE_2834 SM00244 prohibitin homologues AFE_2836 SM00642 Alpha-amylase domain AFE_2849 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_2856 SM00382 ATPases associated with a variety of cellular activities AFE_2856 SM00962 SRP54-type protein, GTPase domain AFE_2856 SM00963 SRP54-type protein, helical bundle domain AFE_2859 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_2860 SM00226 Low molecular weight phosphatase family AFE_2862 SM00382 ATPases associated with a variety of cellular activities AFE_2880 SM00327 von Willebrand factor (vWF) type A domain AFE_2882 SM00986 Uracil DNA glycosylase superfamily AFE_2882 SM00987 UreE urease accessory protein, C-terminal domain AFE_2886 SM00966 SpoVT / AbrB like domain AFE_2889 SM00966 SpoVT / AbrB like domain AFE_2893 SM00382 ATPases associated with a variety of cellular activities AFE_2901 SM00382 ATPases associated with a variety of cellular activities AFE_2901 SM00448 cheY-homologous receiver domain AFE_2902 SM00091 PAS domain AFE_2902 SM00387 Histidine kinase-like ATPases AFE_2902 SM00388 His Kinase A (phosphoacceptor) domain AFE_2907 SM00460 Transglutaminase/protease-like homologues AFE_2910 SM00763 PrkA AAA domain AFE_2915 SM00938 Nitrogen regulatory protein P-II AFE_2923 SM00936 Penicillin-binding protein 5, C-terminal domain AFE_2933 SM00382 ATPases associated with a variety of cellular activities AFE_2934 SM00862 Transcriptional regulatory protein, C terminal AFE_2944 SM00831 Cation transporter/ATPase, N-terminus AFE_2954 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_2955 SM00382 ATPases associated with a variety of cellular activities AFE_2955 SM00448 cheY-homologous receiver domain AFE_2957 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_2957 SM00387 Histidine kinase-like ATPases AFE_2957 SM00388 His Kinase A (phosphoacceptor) domain AFE_2963 SM00382 ATPases associated with a variety of cellular activities AFE_2985 SM00382 ATPases associated with a variety of cellular activities AFE_2988 SM00382 ATPases associated with a variety of cellular activities AFE_2989 SM00382 ATPases associated with a variety of cellular activities AFE_3010 SM00822 AFE_3010 AFE_3010 SM00823 Phosphopantetheine attachment site AFE_3010 SM00825 Beta-ketoacyl synthase AFE_3010 SM00826 AFE_3010 AFE_3010 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFE_3010 SM00829 Enoylreductase AFE_3010 SM01294 AFE_3010 AFE_3015 SM00478 endonuclease III AFE_3026 SM00382 ATPases associated with a variety of cellular activities AFE_3030 SM00116 Domain in cystathionine beta-synthase and other proteins. AFE_3052 SM00961 Ribulose bisphosphate carboxylase, small chain AFE_3054 SM00327 von Willebrand factor (vWF) type A domain AFE_3057 SM00052 Putative diguanylate phosphodiesterase AFE_3057 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFE_3057 SM00267 diguanylate cyclase AFE_3061 SM00732 Likely ribonuclease with RNase H fold. AFE_3069 SM00861 Transketolase, pyrimidine binding domain AFE_3073 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFE_3085 SM00363 S4 RNA-binding domain AFE_3086 SM00831 Cation transporter/ATPase, N-terminus AFE_3094 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFE_3094 SM00474 3'-5' exonuclease AFE_3094 SM00475 5'-3' exonuclease AFE_3094 SM00482 DNA polymerase A domain AFE_3100 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_3102 SM00271 DnaJ molecular chaperone homology domain AFE_3104 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_3104 SM00481 DNA polymerase alpha chain like domain AFE_3104 SM00483 DNA polymerase X family AFE_3136 SM00387 Histidine kinase-like ATPases AFE_3136 SM00388 His Kinase A (phosphoacceptor) domain AFE_3137 SM00448 cheY-homologous receiver domain AFE_3138 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AFE_3158 SM00387 Histidine kinase-like ATPases AFE_3163 SM00830 Chorismate mutase type II AFE_3164 SM00382 ATPases associated with a variety of cellular activities AFE_3176 SM00382 ATPases associated with a variety of cellular activities AFE_3203 SM00382 ATPases associated with a variety of cellular activities AFE_3211 SM00470 ParB-like nuclease domain AFE_3214 SM01228 AFE_3214 AFE_3217 SM00852 Probable molybdopterin binding domain AFE_3236 SM00382 ATPases associated with a variety of cellular activities AFE_3251 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFE_3252 SM00861 Transketolase, pyrimidine binding domain AFE_3274 SM00448 cheY-homologous receiver domain AFE_3274 SM00862 Transcriptional regulatory protein, C terminal AFE_3275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_3275 SM00387 Histidine kinase-like ATPases AFE_3275 SM00388 His Kinase A (phosphoacceptor) domain AFE_3298 SM01004 Delta-aminolevulinic acid dehydratase AFE_3307 SM00822 AFE_3307 AFE_3309 SM00382 ATPases associated with a variety of cellular activities AFE_3309 SM00760 Bacterial dnaA protein helix-turn-helix domain