locus_tag old_locus_tag gene Name start end strand product note type ID NCBI AFE_0001 AFE_0001 dnaN dnaN 86 1183 + DNA polymerase III%2C beta subunit identified by similarity to SP:P00583%3B match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663 gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0001 AFE_0002 AFE_0002 AFE_0002 1185 2237 + DNA replication and repair protein RecF identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00611 gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0002 AFE_0003 AFE_0003 gyrB gyrB 2237 4639 + DNA gyrase%2C B subunit identified by similarity to SP:P06982%3B match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059 gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0003 AFE_0004 AFE_0004 AFE_0004 4784 8290 + conserved hypothetical protein identified by similarity to GB:AAO90130.1 gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0004 AFE_0005 AFE_0005 AFE_0005 8385 8897 + spore coat protein identified by similarity to SP:P27755%3B match to protein family HMM PF05229 gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0005 AFE_0006 AFE_0006 AFE_0006 8911 9654 + pilus chaperone protein%2C putative identified by similarity to SP:P15319 gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0006 AFE_0007 AFE_0007 AFE_0007 9620 12064 + outer membrane usher protein%2C putative identified by match to protein family HMM PF00577 gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0007 AFE_0008 AFE_0008 AFE_0008 12061 12525 + spore coat protein identified by similarity to SP:P27755%3B match to protein family HMM PF05229 gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0008 AFE_0009 AFE_0009 AFE_0009 12548 12676 - cell division topological specificity factor MinE%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated pseudogene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0009 AFE_0010 AFE_0010 AFE_0010 12684 13118 - conserved hypothetical protein identified by similarity to GB:AAP86126.1 gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0010 AFE_0011 AFE_0011 minE minE 13451 13702 - cell division topological specificity factor MinE identified by similarity to SP:P18198%3B match to protein family HMM PF03776%3B match to protein family HMM TIGR01215 gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0011 AFE_0012 AFE_0012 minD minD 13704 14513 - septum site-determining protein MinD identified by similarity to SP:P18197%3B match to protein family HMM PF01656%3B match to protein family HMM TIGR01968 gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0012 AFE_0013 AFE_0013 minC minC 14532 15215 - septum site-determining protein MinC identified by similarity to SP:P18196%3B match to protein family HMM PF03775%3B match to protein family HMM TIGR01222 gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0013 AFE_0014 AFE_0014 AFE_0014 15294 15620 - ferredoxin identified by similarity to SP:P08811%3B match to protein family HMM PF00037 gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0014 AFE_0015 AFE_0015 topA topA 15617 18172 - DNA topoisomerase I identified by match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051 gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0015 AFE_0016 AFE_0016 AFE_0016 18176 18616 - smg family protein gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0016 AFE_0017 AFE_0017 AFE_0017 18626 19723 - DNA processing protein DprA%2C putative identified by match to protein family HMM PF02481%3B match to protein family HMM TIGR00732 gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0017 AFE_0018 AFE_0018 AFE_0018 19720 20769 - LysM domain protein identified by match to protein family HMM PF01476 gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0018 AFE_0019 AFE_0019 def-2 def-2 20852 21355 + polypeptide deformylase identified by similarity to SP:P27251%3B match to protein family HMM PF01327%3B match to protein family HMM TIGR00079 gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0019 AFE_0020 AFE_0020 fmt fmt 21348 22289 + methionyl-tRNA formyltransferase identified by similarity to SP:O85732%3B match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460 gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0020 AFE_0021 AFE_0021 sun sun 22286 23590 + sun protein identified by similarity to SP:P36929%3B match to protein family HMM PF01029%3B match to protein family HMM PF01189%3B match to protein family HMM TIGR00563 gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0021 AFE_0022 AFE_0022 AFE_0022 23581 24180 + hypothetical protein identified by glimmer%3B putative gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0022 AFE_0023 AFE_0023 ntrY ntrY 24231 26363 + nitrogen regulation protein NtrY%2C putative identified by similarity to SP:Q04850%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0023 AFE_0024 AFE_0024 ntrX ntrX 26385 27791 + nitrogen assimilation regulatory protein NtrX%2C putative identified by similarity to SP:Q04849%3B match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF00165%3B match to protein family HMM PF02954 gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0024 AFE_0025 AFE_0025 AFE_0025 27788 27985 + conserved hypothetical protein identified by similarity to PIR:AG2141 gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0025 AFE_0026 AFE_0026 AFE_0026 28118 29713 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0026 AFE_0027 AFE_0027 AFE_0027 29755 31122 + sigma-54 dependent transcriptional regulator/response regulator identified by similarity to SP:Q06065%3B match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0027 AFE_0028 AFE_0028 AFE_0028 33018 33254 - hypothetical protein identified by glimmer%3B putative gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0028 AFE_0029 AFE_0029 tetH tetH 31545 33044 + tetrathionate hydrolase identified by similarity to GB:AAB93983.1%3B match to protein family HMM PF01011 gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0029 AFE_0030 AFE_0030 AFE_0030 33338 34519 + hypothetical protein identified by glimmer%3B putative gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0030 AFE_0031 AFE_0031 trmE trmE 34591 35946 - tRNA modification GTPase TrmE identified by similarity to SP:P25522%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00450%3B match to protein family HMM TIGR00650 gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0031 AFE_0032 AFE_0032 AFE_0032 35984 37570 - inner membrane protein%2C 60 kDa identified by match to protein family HMM PF02096 gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0032 AFE_0033 AFE_0033 AFE_0033 37586 37801 - conserved hypothetical protein TIGR00278 identified by similarity to SP:P22847%3B match to protein family HMM PF01809%3B match to protein family HMM TIGR00278 gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0033 AFE_0034 AFE_0034 rnpA rnpA 37798 38148 - ribonuclease P protein component identified by match to protein family HMM PF00825%3B match to protein family HMM TIGR00188 gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0034 AFE_0035 AFE_0035 rpmH rpmH 38153 38287 - ribosomal protein L34 identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030 gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0035 AFE_0036 AFE_0036 AFE_0036 38358 40025 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0036 AFE_0037 AFE_0037 AFE_0037 40123 41025 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0037 AFE_0038 AFE_0038 AFE_0038 41087 42199 - drug resistance secretion protein%2C putative identified by match to protein family HMM PF00529 gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0038 AFE_0039 AFE_0039 AFE_0039 42174 43628 - RND efflux system%2C drug efflux transporter%2C outer membrane lipoprotein identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01845 gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0039 AFE_0040 AFE_0040 AFE_0040 43609 45231 - drug resistance transporter%2C EmrB/QacA family identified by match to protein family HMM PF07690 gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0040 AFE_0041 AFE_0041 AFE_0041 45787 46944 + C4-dicarboxylate transporter/malic acid transport protein identified by match to protein family HMM PF03595 gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0041 AFE_0042 AFE_0042 AFE_0042 46984 47796 + Tat (twin-arginine translocation) pathway signal sequence domain protein identified by match to protein family HMM TIGR01409 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0042 AFE_0043 AFE_0043 AFE_0043 47821 48831 + periplasmic solute-binding protein%2C putative identified by similarity to SP:P27366 gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0043 AFE_0044 AFE_0044 doxD_2 doxD_2 48896 49966 + DoxD-like family protein identified by match to protein family HMM PF07681 gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0044 AFE_0045 AFE_0045 AFE_0045 50064 50711 + sulfur/pyrite/thiosulfate/sulfide-induced protein identified by similarity to GB:CAC43401.1 gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0045 AFE_0046 AFE_0046 AFE_0046 50772 51173 + conserved hypothetical protein identified by similarity to PIR:AB2294 gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0046 AFE_0047 AFE_0047 AFE_0047 51204 51701 - conserved hypothetical protein identified by similarity to GB:BAC46291.1%3B match to protein family HMM PF00578%3B match to protein family HMM PF08534 gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0047 AFE_0048 AFE_0048 doxD_1 doxD_1 51795 52877 - DoxD-like family protein identified by match to protein family HMM PF07681 gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0048 AFE_0049 AFE_0049 AFE_0049 52930 53943 - periplasmic solute-binding protein%2C putative identified by similarity to SP:P27366 gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0049 AFE_0050 AFE_0050 AFE_0050 53965 54777 - Tat (twin-arginine translocation) pathway signal sequence domain protein identified by match to protein family HMM TIGR01409 gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0050 AFE_0051 AFE_0051 AFE_0051 54776 55309 + hypothetical protein identified by glimmer%3B putative gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0051 AFE_0052 AFE_0052 AFE_0052 55329 55991 - hypothetical protein identified by glimmer%3B putative gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0052 AFE_0053 AFE_0053 AFE_0053 56115 57149 - membrane protein%2C putative identified by match to protein family HMM PF04143 gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0053 AFE_0054 AFE_0054 AFE_0054 57310 57960 - integral membrane protein%2C MarC family identified by similarity to GB:BAC65273.1%3B match to protein family HMM PF01914%3B match to protein family HMM TIGR00427 gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0054 AFE_0055 AFE_0055 AFE_0055 58078 58335 + conserved hypothetical protein identified by similarity to GB:AAM73313.1%3B match to protein family HMM TIGR02605 gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0055 AFE_0056 AFE_0056 aspS aspS 58419 60209 + aspartyl-tRNA synthetase identified by similarity to SP:P21889%3B match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459 gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0056 AFE_0057 AFE_0057 nadA nadA 60310 61392 + quinolinate synthetase complex%2C subunit A identified by match to protein family HMM PF02445%3B match to protein family HMM TIGR00550 gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0057 AFE_0058 AFE_0058 AFE_0058 61401 62012 + acyltransferase family protein identified by match to protein family HMM PF01553 gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0058 AFE_0059 AFE_0059 AFE_0059 62092 62844 + conserved hypothetical protein identified by similarity to SP:Q8EEF0%3B match to protein family HMM PF01709%3B match to protein family HMM TIGR01033 gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0059 AFE_0060 AFE_0060 ruvC ruvC 62927 63427 + crossover junction endodeoxyribonuclease RuvC identified by similarity to SP:Q51424%3B match to protein family HMM PF02075%3B match to protein family HMM TIGR00228 gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0060 AFE_0061 AFE_0061 ruvA ruvA 63456 64037 + Holliday junction DNA helicase RuvA identified by similarity to SP:P08576%3B match to protein family HMM PF00633%3B match to protein family HMM PF01330%3B match to protein family HMM PF07499%3B match to protein family HMM TIGR00084 gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0061 AFE_0062 AFE_0062 ruvB ruvB 64080 65102 + Holliday junction DNA helicase RuvB identified by similarity to SP:Q51426%3B match to protein family HMM PF00004%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00635 gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0062 AFE_0063 AFE_0063 ybgC ybgC 65092 65514 + tol-pal system-associated acyl-CoA thioesterase identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00051%3B match to protein family HMM TIGR02799 gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0063 AFE_0064 AFE_0064 tolQ tolQ 65521 66222 + TolQ protein identified by similarity to SP:P05828%3B match to protein family HMM PF01618%3B match to protein family HMM TIGR02796 gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0064 AFE_0065 AFE_0065 tolR tolR 66219 66629 + TolR protein identified by similarity to SP:P05829%3B match to protein family HMM PF02472%3B match to protein family HMM TIGR02801 gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0065 AFE_0066 AFE_0066 tolA tolA 66626 67579 + TolA protein identified by similarity to GB:CAB50780.1%3B match to protein family HMM TIGR01352%3B match to protein family HMM TIGR02794 gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0066 AFE_0067 AFE_0067 tolB tolB 67572 68840 + tol-pal system beta propeller repeat protein TolB identified by similarity to SP:P19935%3B match to protein family HMM PF04052%3B match to protein family HMM PF07676%3B match to protein family HMM TIGR02800 gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0067 AFE_0068 AFE_0068 AFE_0068 68882 69571 - exsB protein identified by match to protein family HMM PF06508%3B match to protein family HMM TIGR00364 gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0068 AFE_0069 AFE_0069 AFE_0069 69574 70218 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0069 AFE_0070 AFE_0070 AFE_0070 70218 71036 - conserved hypothetical protein identified by similarity to GB:AAM86603.1%3B match to protein family HMM PF00515%3B match to protein family HMM TIGR02795 gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0070 AFE_0071 AFE_0071 AFE_0071 71057 71635 - peptidoglycan-associated lipoprotein%2C putative identified by similarity to SP:P07176%3B match to protein family HMM PF00691%3B match to protein family HMM TIGR02802 gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0071 AFE_0072 AFE_0072 AFE_0072 71970 72170 + conserved hypothetical protein identified by similarity to PIR:S76075 gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0072 AFE_0073 AFE_0073 AFE_0073 72256 73722 - undecaprenyl-phosphate galactosephosphotransferase identified by similarity to SP:P26406%3B match to protein family HMM PF02397%3B match to protein family HMM TIGR03022%3B match to protein family HMM TIGR03025 gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0073 AFE_0074 AFE_0074 AFE_0074 73707 74717 + chain length determinant family protein identified by match to protein family HMM PF02706 gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0074 AFE_0075 AFE_0075 AFE_0075 74805 75164 + conserved hypothetical protein identified by similarity to GB:AAN48775.1%3B match to protein family HMM PF01047 gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0075 AFE_0076 AFE_0076 AFE_0076 75356 76855 + polysaccharide biosynthesis protein identified by similarity to SP:P37781%3B match to protein family HMM PF01943 gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0076 AFE_0077 AFE_0077 AFE_0077 76845 77906 + conserved hypothetical protein identified by similarity to GB:AAN49860.1%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0077 AFE_0078 AFE_0078 AFE_0078 77969 78952 + glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0078 AFE_0079 AFE_0079 AFE_0079 78949 80160 + glycosyltransferase%2C putative identified by similarity to PIR:E96008%3B match to protein family HMM PF00534 gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0079 AFE_0080 AFE_0080 AFE_0080 80176 81456 + membrane protein%2C putative gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0080 AFE_0081 AFE_0081 mtfA mtfA 81463 82503 + mannosyltransferase identified by similarity to GB:AAF04384.1%3B match to protein family HMM PF00534 gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0081 AFE_0082 AFE_0082 AFE_0082 82571 83497 + O antigen biosynthesis rhamnosyltransferase%2C putative identified by similarity to SP:P26403%3B match to protein family HMM PF00535 gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0082 AFE_0083 AFE_0083 AFE_0083 83490 83858 + mannosyltransferase%2C putative%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to PIR:S22620 pseudogene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0083 AFE_0084 AFE_0084 AFE_0084 83987 84064 + tRNA-Lys tRNA gene83 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0084 AFE_0085 AFE_0085 AFE_0085 84598 84819 + prevent-host-death family protein gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0085 AFE_0086 AFE_0086 AFE_0086 84819 85232 + conserved hypothetical protein identified by similarity to PIR:B70949 gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0086 AFE_0087 AFE_0087 AFE_0087 85229 85519 + hypothetical protein identified by glimmer%3B putative gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0087 AFE_0088 AFE_0088 AFE_0088 85685 85960 + plasmid maintenance system killer protein identified by match to protein family HMM PF05015 gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0088 AFE_0089 AFE_0089 AFE_0089 85976 86293 + DNA-binding protein%2C putative identified by match to protein family HMM TIGR02607 gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0089 AFE_0090 AFE_0090 AFE_0090 86308 86487 + conserved domain protein identified by similarity to GB:AAN33038.1 gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0090 AFE_0091 AFE_0091 AFE_0091 86624 86884 - hypothetical protein identified by glimmer%3B putative gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0091 AFE_0092 AFE_0092 AFE_0092 86994 88070 + fic family protein identified by match to protein family HMM PF02661 gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0092 AFE_0093 AFE_0093 AFE_0093 88203 88630 - plasmid stability protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P55511 pseudogene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0093 AFE_0094 AFE_0094 AFE_0094 88630 88938 - prevent-host-death family protein identified by match to protein family HMM TIGR01552 gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0094 AFE_0095 AFE_0095 AFE_0095 88956 89129 - hypothetical protein identified by glimmer%3B putative gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0095 AFE_0096 AFE_0096 AFE_0096 89240 89668 - hypothetical protein identified by glimmer%3B putative gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0096 AFE_0097 AFE_0097 AFE_0097 89671 90102 - hypothetical protein identified by glimmer%3B putative gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0097 AFE_0098 AFE_0098 AFE_0098 90248 92506 - DoxD family protein/pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF07681%3B match to protein family HMM PF07992 gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0098 AFE_0099 AFE_0099 AFE_0099 92626 93072 + hypothetical protein identified by glimmer%3B putative gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0099 AFE_0100 AFE_0100 AFE_0100 93079 94164 - conserved hypothetical protein identified by similarity to GB:AAM71795.1%3B match to protein family HMM PF00529 gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0100 AFE_0101 AFE_0101 AFE_0101 94154 94846 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0101 AFE_0102 AFE_0102 AFE_0102 94848 95984 - ABC transporter%2C permease protein%2C putative identified by match to protein family HMM PF02687 gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0102 AFE_0103 AFE_0103 AFE_0103 95981 96208 - hypothetical protein identified by glimmer%3B putative gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0103 AFE_0104 AFE_0104 AFE_0104 96317 96553 + hypothetical protein identified by glimmer%3B putative gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0104 AFE_0105 AFE_0105 AFE_0105 96590 97855 - metal ion transporter%2C NRAMP family identified by match to protein family HMM PF01566 gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0105 AFE_0106 AFE_0106 AFE_0106 97942 99282 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0106 AFE_0107 AFE_0107 AFE_0107 99246 99956 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0107 AFE_0108 AFE_0108 AFE_0108 100177 101736 + RND efflux system%2C outer membrane lipoprotein%2C NodT family identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01845 gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0108 AFE_0109 AFE_0109 AFE_0109 101733 102815 + efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0109 AFE_0110 AFE_0110 AFE_0110 102833 105918 + transporter%2C AcrB/AcrD/AcrF family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAO90606.1 pseudogene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0110 AFE_0111 AFE_0111 AFE_0111 105998 106156 + hypothetical protein identified by glimmer%3B putative gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0111 AFE_0112 AFE_0112 AFE_0112 106392 106949 + conserved hypothetical protein TIGR00650 identified by similarity to GB:BAC61454.1%3B match to protein family HMM PF06041 gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0112 AFE_0113 AFE_0113 AFE_0113 107062 107265 + hypothetical protein identified by glimmer%3B putative gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0113 AFE_0114 AFE_0114 AFE_0114 107262 108281 + lipase/esterase%2C putative identified by similarity to SP:P23872%3B match to protein family HMM PF07859 gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0114 AFE_0115 AFE_0115 AFE_0115 108301 109737 + conserved domain protein identified by match to protein family HMM PF03724 gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0115 AFE_0116 AFE_0116 AFE_0116 110119 110220 - hypothetical protein identified by glimmer%3B putative gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0116 AFE_0117 AFE_0117 AFE_0117 110500 111384 + conserved domain protein identified by similarity to SP:P77234%3B match to protein family HMM PF08238 gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0117 AFE_0118 AFE_0118 AFE_0118 111474 111686 - hypothetical protein identified by glimmer%3B putative gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0118 AFE_0119 AFE_0119 AFE_0119 111694 112356 + transcriptional regulator%2C Crp/Fnr family identified by match to protein family HMM PF00027%3B match to protein family HMM PF00325 gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0119 AFE_0120 AFE_0120 AFE_0120 112446 112652 + conserved hypothetical protein identified by similarity to GB:AAP77746.1 gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0120 AFE_0121 AFE_0121 AFE_0121 112734 112865 - hypothetical protein identified by glimmer%3B putative gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0121 AFE_0122 AFE_0122 AFE_0122 112952 113305 + conserved domain protein gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0122 AFE_0123 AFE_0123 gcp gcp 113298 114305 + O-sialoglycoprotein endopeptidase identified by similarity to SP:P36175%3B match to protein family HMM PF00814%3B match to protein family HMM TIGR00329 gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0123 AFE_0124 AFE_0124 AFE_0124 114305 114832 + TPR domain protein identified by match to protein family HMM PF00515 gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0124 AFE_0125 AFE_0125 AFE_0125 114839 115435 - membrane protein%2C putative identified by similarity to GB:CAE33513.1%3B match to protein family HMM PF02660%3B match to protein family HMM TIGR00023 gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0125 AFE_0126 AFE_0126 folB folB 115508 115867 + dihydroneopterin aldolase identified by similarity to SP:P31055%3B match to protein family HMM PF02152%3B match to protein family HMM TIGR00525%3B match to protein family HMM TIGR00526 gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0126 AFE_0127 AFE_0127 AFE_0127 115885 117225 - MiaB-like tRNA modifying enzyme YliG%2C putative identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01125 gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0127 AFE_0128 AFE_0128 AFE_0128 117222 117614 - NifU domain protein identified by match to protein family HMM PF01106 gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0128 AFE_0129 AFE_0129 AFE_0129 117611 118351 - oxidoreductase%2C short-chain dehydrogenase/reductase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659 gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0129 AFE_0130 AFE_0130 AFE_0130 118133 119488 + conserved hypothetical protein identified by similarity to GB:AAM35577.1%3B match to protein family HMM PF02636 gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0130 AFE_0131 AFE_0131 AFE_0131 119591 120526 - membrane protein%2C putative gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0131 AFE_0132 AFE_0132 AFE_0132 120643 120870 - hypothetical protein identified by glimmer%3B putative gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0132 AFE_0133 AFE_0133 AFE_0133 120599 120724 + hypothetical protein identified by glimmer%3B putative gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0133 AFE_0134 AFE_0134 hemN hemN 121003 122394 - oxygen-independent coproporphyrinogen III oxidase identified by similarity to SP:P32131%3B match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00538 gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0134 AFE_0135 AFE_0135 AFE_0135 122432 123364 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0135 AFE_0136 AFE_0136 AFE_0136 123387 123512 - hypothetical protein identified by glimmer%3B putative gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0136 AFE_0137 AFE_0137 AFE_0137 123600 124943 + conserved hypothetical protein identified by similarity to PIR:D83343 gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0137 AFE_0138 AFE_0138 AFE_0138 125017 126126 - LPS heptosyltransferase II identified by similarity to GB:AAL23754.1%3B match to protein family HMM PF01075%3B match to protein family HMM TIGR02195 gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0138 AFE_0139 AFE_0139 AFE_0139 126149 126913 - conserved hypothetical protein identified by similarity to PIR:A81668 gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0139 AFE_0140 AFE_0140 AFE_0140 126917 128302 - oxidase%2C FAD-binding identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913 gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0140 AFE_0141 AFE_0141 AFE_0141 128299 129375 - phosphoheptose isomerase/cytidylyltransferase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00441%3B match to protein family HMM TIGR02199 gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0141 AFE_0142 AFE_0142 AFE_0142 129372 129737 - conserved hypothetical protein TIGR00252 identified by match to protein family HMM PF02021%3B match to protein family HMM TIGR00252 gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0142 AFE_0143 AFE_0143 AFE_0143 129741 131579 - lipoprotein%2C putative gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0143 AFE_0144 AFE_0144 AFE_0144 131649 132524 + tetrapyrrole methylase family protein identified by similarity to GB:AAN66950.1%3B match to protein family HMM PF00590%3B match to protein family HMM TIGR00096 gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0144 AFE_0145 AFE_0145 AFE_0145 132538 132613 + tRNA-Phe tRNA gene144 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0145 AFE_0146 AFE_0146 AFE_0146 132816 132965 + hypothetical protein identified by glimmer%3B putative gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0146 AFE_0147 AFE_0147 AFE_0147 133054 133299 - conserved hypothetical protein identified by similarity to GB:AAQ58419.1 gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0147 AFE_0148 AFE_0148 AFE_0148 133571 134074 - hypothetical protein identified by glimmer%3B putative gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0148 AFE_0149 AFE_0149 AFE_0149 133298 133624 + hypothetical protein identified by glimmer%3B putative gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0149 AFE_0150 AFE_0150 AFE_0150 134110 134904 - conserved hypothetical protein identified by similarity to GB:CAE33855.1 gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0150 AFE_0151 AFE_0151 AFE_0151 135019 135417 - rhodanese-like domain protein identified by match to protein family HMM PF00581 gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0151 AFE_0152 AFE_0152 AFE_0152 135448 135831 - conserved hypothetical protein identified by similarity to PIR:D84128%3B match to protein family HMM PF04241 gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0152 AFE_0153 AFE_0153 AFE_0153 136020 136712 + integral membrane protein identified by match to protein family HMM PF01988 gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0153 AFE_0154 AFE_0154 AFE_0154 136964 137620 + MIP family channel protein identified by match to protein family HMM PF00230 gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0154 AFE_0155 AFE_0155 AFE_0155 137788 138393 + phosphoglycerate mutase family protein identified by match to protein family HMM PF00300 gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0155 AFE_0156 AFE_0156 speE speE 138424 139374 - spermidine synthase identified by match to protein family HMM PF01564%3B match to protein family HMM TIGR00417 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0156 AFE_0157 AFE_0157 AFE_0157 139376 139777 - s-adenosylmethionine decarboxylase proenzyme identified by similarity to SP:O34426%3B match to protein family HMM PF02675 gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0157 AFE_0158 AFE_0158 AFE_0158 140091 140921 + toluene ABC transporter%2C ATP-binding protein%2C putative identified by similarity to GB:AAD17957.1%3B match to protein family HMM PF00005 gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0158 AFE_0159 AFE_0159 AFE_0159 140924 141706 + toluene tolerance protein Ttg2B%2C putative identified by similarity to GB:AAD17958.1%3B match to protein family HMM PF02405%3B match to protein family HMM TIGR00056 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0159 AFE_0160 AFE_0160 AFE_0160 141721 142179 + mce-related protein identified by match to protein family HMM PF02470 gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0160 AFE_0161 AFE_0161 AFE_0161 142196 142834 + toluene tolerance protein%2C putative identified by match to protein family HMM PF05494 gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0161 AFE_0162 AFE_0162 AFE_0162 142906 143148 + conserved hypothetical protein identified by similarity to GB:CAD16664.1 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0162 AFE_0163 AFE_0163 AFE_0163 143141 144061 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0163 AFE_0164 AFE_0164 AFE_0164 144064 144327 + S4 domain protein identified by match to protein family HMM PF01479 gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0164 AFE_0165 AFE_0165 pdxA pdxA 144324 145325 + 4-hydroxythreonine-4-phosphate dehydrogenase identified by similarity to SP:P19624%3B match to protein family HMM PF04166%3B match to protein family HMM TIGR00557 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0165 AFE_0166 AFE_0166 AFE_0166 145352 145906 - HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0166 AFE_0167 AFE_0167 ksgA ksgA 145972 146775 + dimethyladenosine transferase identified by similarity to SP:P06992%3B match to protein family HMM PF00398%3B match to protein family HMM TIGR00755 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0167 AFE_0168 AFE_0168 AFE_0168 147205 148095 - hypothetical protein identified by glimmer%3B putative gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0168 AFE_0169 AFE_0169 AFE_0169 146772 147239 + conserved domain protein identified by similarity to GB:CAD74705.1 gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0169 AFE_0170 AFE_0170 argS argS 148046 149785 - arginyl-tRNA synthetase identified by similarity to SP:P46906%3B match to protein family HMM PF00750%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456 gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0170 AFE_0171 AFE_0171 AFE_0171 149925 151529 - drug resistance transporter%2Cputative%2C EmrB/QacA subfamily identified by match to protein family HMM PF07690 gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0171 AFE_0172 AFE_0172 AFE_0172 151578 152471 + transcriptional regulator%2C LysR family identified by similarity to SP:P25544%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0172 AFE_0173 AFE_0173 prmB prmB 152487 153398 - ribosomal protein L3 N-methyltransferase identified by match to protein family HMM PF05175%3B match to protein family HMM PF08242%3B match to protein family HMM TIGR00536%3B match to protein family HMM TIGR03533 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0173 AFE_0174 AFE_0174 xth-2 xth-2 153399 154160 - exodeoxyribonuclease III identified by match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633 gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0174 AFE_0175 AFE_0175 AFE_0175 154173 154481 - hypothetical protein identified by glimmer%3B putative gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0175 AFE_0176 AFE_0176 AFE_0176 154478 155335 - conserved hypothetical protein identified by similarity to PIR:C83019%3B match to protein family HMM PF04378 gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0176 AFE_0177 AFE_0177 AFE_0177 155427 156029 + glutathione S-transferase family protein identified by similarity to GB:AAQ60970.1%3B match to protein family HMM PF02798 gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0177 AFE_0178 AFE_0178 xth-1 xth-1 156035 156808 + exodeoxyribonuclease III identified by match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633 gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0178 AFE_0179 AFE_0179 hemH hemH 156805 157818 + ferrochelatase identified by similarity to SP:P23871%3B match to protein family HMM PF00762%3B match to protein family HMM TIGR00109 gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0179 AFE_0180 AFE_0180 AFE_0180 157886 158374 + peptidyl-prolyl cis-trans isomerase%2C FKBP-type identified by similarity to SP:P30856%3B match to protein family HMM PF00254 gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0180 AFE_0181 AFE_0181 AFE_0181 158423 159604 + conserved hypothetical protein identified by match to protein family HMM PF03702 gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0181 AFE_0182 AFE_0182 aroE aroE 159585 160481 + shikimate 5-dehydrogenase identified by similarity to SP:P54374%3B match to protein family HMM PF01488%3B match to protein family HMM PF08501%3B match to protein family HMM TIGR00507 gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0182 AFE_0183 AFE_0183 AFE_0183 160451 162160 + type IV pilus assembly protein identified by similarity to SP:P45792%3B match to protein family HMM PF00437%3B match to protein family HMM PF05157%3B match to protein family HMM TIGR02538 gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0183 AFE_0184 AFE_0184 AFE_0184 162300 163892 + sensor protein PilS%2C putative identified by similarity to SP:P33639%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0184 AFE_0185 AFE_0185 AFE_0185 163903 165240 + type IV fimbriae expression regulatory protein PilR%2C putative identified by similarity to SP:Q00934%3B match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0185 AFE_0186 AFE_0186 pilD pilD 165237 166037 + type IV pilus prepilin peptidase PilD identified by similarity to SP:P22610%3B match to protein family HMM PF01478%3B match to protein family HMM PF06750 gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0186 AFE_0187 AFE_0187 coaE coaE 166038 166652 + dephospho-CoA kinase identified by similarity to SP:P36679%3B match to protein family HMM PF01121%3B match to protein family HMM TIGR00152 gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0187 AFE_0188 AFE_0188 AFE_0188 166771 167523 + conserved hypothetical protein identified by similarity to GB:AAO89714.1 gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0188 AFE_0189 AFE_0189 fbp fbp 167554 168573 + fructose-1-6-bisphosphatase identified by match to protein family HMM PF00316 gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0189 AFE_0190 AFE_0190 sspB sspB 168768 169193 + stringent starvation protein B identified by similarity to SP:P25663%3B match to protein family HMM PF04386 gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0190 AFE_0191 AFE_0191 AFE_0191 169837 170079 - transcriptional regulator%2C Fis family identified by match to protein family HMM PF02954 gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0191 AFE_0192 AFE_0192 AFE_0192 169190 169855 + transglycosylase%2C putative identified by match to protein family HMM PF01464 gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0192 AFE_0193 AFE_0193 AFE_0193 170091 170723 - MJ0042 family finger-like domain protein identified by match to protein family HMM TIGR02098 gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0193 AFE_0194 AFE_0194 prmA prmA 170726 171604 - ribosomal protein L11 methyltransferase identified by similarity to SP:P28637%3B match to protein family HMM PF06325%3B match to protein family HMM TIGR00406 gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0194 AFE_0195 AFE_0195 accC accC 171601 172947 - acetyl-CoA carboxylase%2C biotin carboxylase identified by similarity to SP:P37798%3B match to protein family HMM PF00289%3B match to protein family HMM PF02222%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM TIGR00514 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0195 AFE_0196 AFE_0196 accB accB 172949 173419 - acetyl-CoA carboxylase%2C biotin carboxyl carrier protein identified by similarity to SP:P37799%3B match to protein family HMM PF00364%3B match to protein family HMM TIGR00531 gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0196 AFE_0197 AFE_0197 aroQ aroQ 173439 173900 - 3-dehydroquinate dehydratase%2C type II identified by similarity to SP:P43877%3B match to protein family HMM PF01220%3B match to protein family HMM TIGR01088 gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0197 AFE_0198 AFE_0198 AFE_0198 174068 174445 - transcriptional regulator identified by match to protein family HMM PF01638 gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0198 AFE_0199 AFE_0199 AFE_0199 174782 175639 + conserved hypothetical protein identified by similarity to GB:CAE34827.1 gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0199 AFE_0200 AFE_0200 ftsZ ftsZ 175761 176924 - cell division protein FtsZ identified by similarity to SP:P06138%3B match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065 gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0200 AFE_0201 AFE_0201 ftsA ftsA 176983 178251 - cell division protein FtsA identified by similarity to SP:P06137%3B match to protein family HMM PF02491%3B match to protein family HMM TIGR01174 gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0201 AFE_0202 AFE_0202 AFE_0202 178282 179124 - cell division protein FtsQ identified by similarity to SP:P06136%3B match to protein family HMM PF03799%3B match to protein family HMM PF08478 gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0202 AFE_0203 AFE_0203 ddlB ddlB 179117 180043 - D-alanine--D-alanine ligase identified by similarity to SP:P07862%3B match to protein family HMM PF01820%3B match to protein family HMM PF07478%3B match to protein family HMM TIGR01205 gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0203 AFE_0204 AFE_0204 murB murB 180036 180923 - UDP-N-acetylenolpyruvoylglucosamine reductase identified by similarity to SP:P18579%3B match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179 gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0204 AFE_0205 AFE_0205 murC murC 180920 182314 - UDP-N-acetylmuramate--alanine ligase identified by similarity to SP:P17952%3B match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01082 gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0205 AFE_0206 AFE_0206 murG murG 182307 183389 - UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase identified by similarity to SP:P17443%3B match to protein family HMM PF03033%3B match to protein family HMM PF04101%3B match to protein family HMM TIGR01133 gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0206 AFE_0207 AFE_0207 ftsW ftsW 183382 184554 - cell division protein FtsW identified by similarity to SP:P16457%3B match to protein family HMM PF01098%3B match to protein family HMM TIGR02614 gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0207 AFE_0208 AFE_0208 murD murD 184551 185897 - UDP-N-acetylmuramoylalanine--D-glutamate ligase identified by similarity to SP:P14900%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01087 gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0208 AFE_0209 AFE_0209 mraY mraY 185899 186981 - phospho-N-acetylmuramoyl-pentapeptide-transferase identified by similarity to SP:P15876%3B match to protein family HMM PF00953%3B match to protein family HMM TIGR00445 gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0209 AFE_0210 AFE_0210 murF murF 186981 188333 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase identified by similarity to SP:P11880%3B match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01143 gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0210 AFE_0211 AFE_0211 murE murE 188330 189781 - UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase identified by similarity to SP:P22188%3B match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01085 gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0211 AFE_0212 AFE_0212 ftsI ftsI 189768 191552 - peptidoglycan synthetase FtsI identified by similarity to SP:P04286%3B match to protein family HMM PF00905%3B match to protein family HMM PF03717 gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0212 AFE_0213 AFE_0213 ftsL ftsL 191549 191812 - cell division protein FtsL identified by match to protein family HMM PF04999%3B match to protein family HMM TIGR02209 gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0213 AFE_0214 AFE_0214 mraW mraW 191802 192767 - S-adenosyl-methyltransferase MraW identified by similarity to SP:P18595%3B match to protein family HMM PF01795%3B match to protein family HMM TIGR00006 gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0214 AFE_0215 AFE_0215 mraZ mraZ 192764 193219 - mraZ protein identified by similarity to GB:AAN78597.1%3B match to protein family HMM PF02381%3B match to protein family HMM TIGR00242 gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0215 AFE_0216 AFE_0216 AFE_0216 193542 193887 - sRNA ncRNA gene215 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0216 AFE_0217 AFE_0217 AFE_0217 193558 193851 - Bacterial RNase P class A gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0217 AFE_0218 AFE_0218 AFE_0218 194246 195616 - polyA polymerase family protein identified by match to protein family HMM PF01743 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0218 AFE_0219 AFE_0219 AFE_0219 194035 194301 + hypothetical protein identified by glimmer%3B putative gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0219 AFE_0220 AFE_0220 AFE_0220 195622 197364 - AMP-binding protein identified by match to protein family HMM PF00501 gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0220 AFE_0221 AFE_0221 sspA sspA 197366 197986 - stringent starvation protein A identified by similarity to SP:P05838%3B match to protein family HMM PF00462%3B match to protein family HMM PF02798 gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0221 AFE_0222 AFE_0222 AFE_0222 197967 198086 + hypothetical protein identified by glimmer%3B putative gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0222 AFE_0223 AFE_0223 lpxC lpxC 198276 199190 + UDP-3-0-acyl N-acetylglucosamine deacetylase identified by similarity to SP:P47205%3B match to protein family HMM PF03331%3B match to protein family HMM TIGR00325 gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0223 AFE_0224 AFE_0224 AFE_0224 199584 199679 + hypothetical protein identified by glimmer%3B putative gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0224 AFE_0225 AFE_0225 secA secA 199695 202439 + preprotein translocase%2C SecA subunit identified by similarity to SP:P10408%3B match to protein family HMM PF00271%3B match to protein family HMM PF01043%3B match to protein family HMM PF02810%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963 gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0225 AFE_0226 AFE_0226 argJ argJ 202449 203675 + arginine biosynthesis bifunctional protein ArgJ identified by similarity to SP:P38434%3B match to protein family HMM PF01960%3B match to protein family HMM TIGR00120 gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0226 AFE_0227 AFE_0227 AFE_0227 203675 204664 + mutator mutT protein/thiamine-phosphate pyrophosphorylase family protein identified by match to protein family HMM PF00293%3B match to protein family HMM PF02581%3B match to protein family HMM TIGR00586 gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0227 AFE_0228 AFE_0228 AFE_0228 204665 205627 + glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0228 AFE_0229 AFE_0229 AFE_0229 205624 206340 + polysaccharide deacetylase family protein identified by match to protein family HMM PF01522 gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0229 AFE_0230 AFE_0230 AFE_0230 206406 207416 + glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0230 AFE_0231 AFE_0231 AFE_0231 207671 209062 + dolichyl-phosphate-mannose-protein mannosyltransferase family protein identified by match to protein family HMM PF02366 gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0231 AFE_0232 AFE_0232 AFE_0232 209110 210363 + O-antigen polymerase family protein identified by match to protein family HMM PF04932 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0232 AFE_0233 AFE_0233 AFE_0233 210412 211359 + glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0233 AFE_0234 AFE_0234 AFE_0234 211360 212157 + lipopolysaccharide core biosynthesis glycosyl transferase identified by similarity to SP:Q9XC90%3B match to protein family HMM PF00535 gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0234 AFE_0235 AFE_0235 rfaC rfaC 212157 213209 + lipopolysaccharide heptosyltransferase 1 identified by similarity to SP:P24173%3B match to protein family HMM PF01075%3B match to protein family HMM TIGR02193 gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0235 AFE_0236 AFE_0236 AFE_0236 213206 213886 + conserved hypothetical protein identified by similarity to GB:AAK22293.1 gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0236 AFE_0237 AFE_0237 kdtA kdtA 213883 215136 + 3-deoxy-D-manno-octulosonic-acid transferase identified by similarity to SP:P23282%3B match to protein family HMM PF04413 gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0237 AFE_0238 AFE_0238 AFE_0238 215142 216050 - lipid A biosynthesis lauroyl acyltransferase identified by similarity to SP:P24187%3B match to protein family HMM PF03279 gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0238 AFE_0239 AFE_0239 AFE_0239 216151 217308 - aminotransferase%2C class II identified by similarity to SP:P23256%3B similarity to SP:Q08432%3B match to protein family HMM PF00155 gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0239 AFE_0240 AFE_0240 AFE_0240 217305 219413 - conserved hypothetical protein identified by similarity to GB:CAD86313.1%3B match to protein family HMM PF03781%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0240 AFE_0241 AFE_0241 AFE_0241 219457 219972 - RNA methyltransferase%2C TrmH family%2C group 2 identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00185 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0241 AFE_0242 AFE_0242 comF comF 219983 220774 - competence protein identified by similarity to SP:P31773 gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0242 AFE_0243 AFE_0243 bioF bioF 220808 221977 + 8-amino-7-oxononanoate synthase identified by similarity to SP:P12998%3B match to protein family HMM PF00155%3B match to protein family HMM TIGR00858 gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0243 AFE_0244 AFE_0244 bioH bioH 221974 222738 + bioH protein identified by similarity to SP:P13001%3B match to protein family HMM PF00561%3B match to protein family HMM TIGR01738 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0244 AFE_0245 AFE_0245 bioC bioC 222735 223613 + biotin synthesis protein BioC identified by similarity to SP:P12999%3B match to protein family HMM PF02828%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242%3B match to protein family HMM TIGR02072 gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0245 AFE_0246 AFE_0246 bioD-2 bioD-2 223610 224314 + dethiobiotin synthetase identified by match to protein family HMM TIGR00347 gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0246 AFE_0247 AFE_0247 htpX-2 htpX-2 224428 225324 + heat shock protein HtpX identified by similarity to SP:P23894%3B match to protein family HMM PF01435 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0247 AFE_0248 AFE_0248 aat aat 225371 226096 + leucyl/phenylalanyl-tRNA--protein transferase identified by similarity to SP:P23885%3B match to protein family HMM PF03588%3B match to protein family HMM TIGR00667 gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0248 AFE_0249 AFE_0249 ate ate 226099 226809 + arginine-tRNA--protein transferase identified by match to protein family HMM PF04376%3B match to protein family HMM PF04377 gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0249 AFE_0250 AFE_0250 AFE_0250 226806 227585 + membrane protein%2C putative identified by match to protein family HMM PF03649%3B match to protein family HMM TIGR00245 gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0250 AFE_0251 AFE_0251 rnt rnt 227592 228197 + ribonuclease T identified by match to protein family HMM PF00929%3B match to protein family HMM TIGR01298 gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0251 AFE_0252 AFE_0252 AFE_0252 228273 229289 + CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase%2C putative identified by similarity to SP:P37911%3B match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0252 AFE_0253 AFE_0253 AFE_0253 229352 229720 + conserved domain protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0253 AFE_0254 AFE_0254 AFE_0254 230113 231051 - membrane protein%2C putative gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0254 AFE_0255 AFE_0255 AFE_0255 231155 231886 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0255 AFE_0256 AFE_0256 argB argB 231883 232755 + acetylglutamate kinase identified by similarity to SP:P59300%3B match to protein family HMM PF00696%3B match to protein family HMM TIGR00761 gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0256 AFE_0257 AFE_0257 AFE_0257 232838 233851 - secretion protein%2C HlyD family identified by match to protein family HMM PF00529 gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0257 AFE_0258 AFE_0258 AFE_0258 234088 234654 + hypothetical protein identified by glimmer%3B putative gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0258 AFE_0259 AFE_0259 bioB bioB 234701 235651 - biotin synthase identified by similarity to SP:P12996%3B match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR00433 gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0259 AFE_0260 AFE_0260 AFE_0260 235648 235998 - conserved hypothetical protein TIGR00251%2C putative identified by similarity to SP:Q8DCB7%3B match to protein family HMM PF02594 gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0260 AFE_0261 AFE_0261 AFE_0261 236023 236301 - YGGT family protein identified by match to protein family HMM PF02325 gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0261 AFE_0262 AFE_0262 proC proC 236298 237125 - pyrroline-5-carboxylate reductase identified by similarity to SP:P22008%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00112 gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0262 AFE_0263 AFE_0263 AFE_0263 237122 237790 - conserved hypothetical protein TIGR00044 identified by match to protein family HMM PF01168%3B match to protein family HMM TIGR00044 gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0263 AFE_0264 AFE_0264 pilT-2 pilT-2 237892 238941 + twitching motility protein PilT identified by similarity to SP:P24559%3B match to protein family HMM PF00437%3B match to protein family HMM TIGR01420 gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0264 AFE_0265 AFE_0265 pilT-1 pilT-1 238951 240081 + twitching motility protein PilT identified by similarity to GB:AAL37755.1%3B match to protein family HMM PF00437%3B match to protein family HMM TIGR01420 gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0265 AFE_0266 AFE_0266 AFE_0266 240009 241235 + glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535%3B match to protein family HMM TIGR03469 gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0266 AFE_0267 AFE_0267 sqr sqr 241295 242422 - sulfide quinone reductase%2C putative identified by similarity to GB:AAF72963.1%3B match to protein family HMM PF07992 gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0267 AFE_0268 AFE_0268 AFE_0268 242547 243164 - conserved domain protein identified by similarity to GB:CAD79002.1 gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0268 AFE_0269 AFE_0269 AFE_0269 243177 243866 - metallo-beta-lactamase family protein identified by similarity to PIR:S74892%3B match to protein family HMM PF00753 gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0269 AFE_0270 AFE_0270 AFE_0270 244007 244708 - transcriptional regulator%2C Crp/Fnr family identified by match to protein family HMM PF00027%3B match to protein family HMM PF00325 gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0270 AFE_0271 AFE_0271 trmB trmB 244705 245388 - tRNA (guanine-N(7)-)-methyltransferase identified by similarity to SP:Q87AE9%3B match to protein family HMM PF02390%3B match to protein family HMM TIGR00091 gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0271 AFE_0272 AFE_0272 purE purE 245435 245932 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit identified by similarity to SP:P12044%3B match to protein family HMM PF00731%3B match to protein family HMM TIGR01162 gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0272 AFE_0273 AFE_0273 purK purK 245929 247062 + phosphoribosylaminoimidazole carboxylase%2C ATPase subunit identified by similarity to SP:P12045%3B match to protein family HMM PF02222%3B match to protein family HMM TIGR01161 gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0273 AFE_0274 AFE_0274 AFE_0274 247096 247632 - disulfide bond formation protein B%2C putative identified by similarity to SP:P30018 gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0274 AFE_0275 AFE_0275 AFE_0275 247605 248216 - thiol:disulfide interchange domain protein identified by similarity to SP:P77202 gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0275 AFE_0276 AFE_0276 AFE_0276 248213 249883 - dolichyl-phosphate-mannose-protein mannosyltransferase family protein identified by match to protein family HMM PF02366 gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0276 AFE_0277 AFE_0277 smpB smpB 249876 250337 - SsrA-binding protein identified by similarity to SP:P32052%3B match to protein family HMM PF01668%3B match to protein family HMM TIGR00086 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0277 AFE_0278 AFE_0278 AFE_0278 250534 251634 + phospholipase D family protein identified by match to protein family HMM PF00614 gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0278 AFE_0279 AFE_0279 AFE_0279 252126 252473 - lipoprotein%2C SmpA/OmlA family identified by similarity to GB:AAN70303.1%3B match to protein family HMM PF04355 gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0279 AFE_0280 AFE_0280 AFE_0280 251644 252129 + conserved hypothetical protein identified by match to protein family HMM PF03364 gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0280 AFE_0281 AFE_0281 proB-3 proB-3 253013 254143 - glutamate 5-kinase identified by similarity to SP:P07005%3B match to protein family HMM PF00696%3B match to protein family HMM PF01472%3B match to protein family HMM TIGR01027 gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0281 AFE_0282 AFE_0282 fur fur 252540 253016 + ferric uptake regulation protein identified by similarity to SP:P06975%3B match to protein family HMM PF01475 gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0282 AFE_0283 AFE_0283 AFE_0283 254140 255264 - GTP-binding protein Obg/CgtA identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR02729 gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0283 AFE_0284 AFE_0284 rpmA rpmA 255320 255580 - ribosomal protein L27 identified by similarity to SP:P02427%3B match to protein family HMM PF01016%3B match to protein family HMM TIGR00062 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0284 AFE_0285 AFE_0285 rplU rplU 255592 255903 - ribosomal protein L21 identified by similarity to SP:P02422%3B match to protein family HMM PF00829%3B match to protein family HMM TIGR00061 gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0285 AFE_0286 AFE_0286 AFE_0286 256086 257636 - sulfate transporter family protein identified by match to protein family HMM PF00916 gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0286 AFE_0287 AFE_0287 AFE_0287 257646 258275 - carbonic anhydrase identified by similarity to PIR:AI3279%3B match to protein family HMM PF00484 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0287 AFE_0288 AFE_0288 metE metE 258443 260797 - 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase identified by similarity to SP:P25665%3B match to protein family HMM PF01717%3B match to protein family HMM PF08267%3B match to protein family HMM TIGR01371 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0288 AFE_0289 AFE_0289 ubiE ubiE 260893 261678 - ubiquinone/menaquinone biosynthesis methlytransferase UbiE identified by similarity to SP:P27851%3B match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242%3B match to protein family HMM TIGR01934 gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0289 AFE_0290 AFE_0290 AFE_0290 260783 260896 + hypothetical protein identified by glimmer%3B putative gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0290 AFE_0291 AFE_0291 AFE_0291 261726 262382 - glutathione S-transferase family protein identified by match to protein family HMM PF02798 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0291 AFE_0292 AFE_0292 metW metW 262402 263007 - methionine biosynthesis protein MetW identified by similarity to GB:AAO58478.1%3B match to protein family HMM PF07021%3B match to protein family HMM PF08241%3B match to protein family HMM TIGR02081 gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0292 AFE_0293 AFE_0293 metX metX 263004 264155 - homoserine O-acetyltransferase identified by similarity to SP:P45131%3B match to protein family HMM PF00561%3B match to protein family HMM TIGR01392 gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0293 AFE_0294 AFE_0294 AFE_0294 264373 265125 + hypothetical protein identified by glimmer%3B putative gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0294 AFE_0295 AFE_0295 glyA glyA 265259 266503 + serine hydroxymethyltransferase identified by similarity to SP:P00477%3B match to protein family HMM PF00155%3B match to protein family HMM PF00464%3B match to protein family HMM PF01212 gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0295 AFE_0296 AFE_0296 nrdR nrdR 266510 267001 + transcriptional regulator%2C NrdR family identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244 gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0296 AFE_0297 AFE_0297 ribD ribD 266991 268091 + riboflavin biosynthesis protein RibD identified by similarity to SP:P25539%3B match to protein family HMM PF00383%3B match to protein family HMM PF01872%3B match to protein family HMM TIGR00227%3B match to protein family HMM TIGR00326 gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0297 AFE_0298 AFE_0298 ribE ribE 268095 268751 + riboflavin synthase%2C alpha subunit identified by similarity to SP:P50854%3B match to protein family HMM PF00677%3B match to protein family HMM TIGR00187 gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0298 AFE_0299 AFE_0299 ribBA ribBA 268748 269881 + 3%2C4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II identified by similarity to SP:P17620%3B match to protein family HMM PF00925%3B match to protein family HMM PF00926%3B match to protein family HMM TIGR00506 gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0299 AFE_0300 AFE_0300 ribH ribH 269878 270342 + 6%2C7-dimethyl-8-ribityllumazine synthase identified by similarity to SP:P25540%3B match to protein family HMM PF00885%3B match to protein family HMM TIGR00114 gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0300 AFE_0301 AFE_0301 nusB nusB 270353 270796 + transcription antitermination factor NusB identified by match to protein family HMM PF01029%3B match to protein family HMM TIGR01951 gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0301 AFE_0302 AFE_0302 AFE_0302 270924 271205 + conserved domain protein identified by similarity to PIR:B42680 gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0302 AFE_0303 AFE_0303 AFE_0303 271364 271936 + conserved domain protein identified by match to protein family HMM PF08238 gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0303 AFE_0304 AFE_0304 AFE_0304 271954 272307 - conserved hypothetical protein identified by similarity to GB:AAM24168.1 gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0304 AFE_0305 AFE_0305 ubiB ubiB 272362 274044 - 2-polyprenylphenol 6-hydroxylase identified by match to protein family HMM PF03109%3B match to protein family HMM TIGR01982 gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0305 AFE_0306 AFE_0306 AFE_0306 274144 274797 - OmpA family protein identified by similarity to SP:Q05146%3B match to protein family HMM PF00691 gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0306 AFE_0307 AFE_0307 AFE_0307 274789 274986 + hypothetical protein identified by glimmer%3B putative gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0307 AFE_0308 AFE_0308 AFE_0308 275027 275111 + tRNA-Tyr tRNA gene307 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0308 AFE_0309 AFE_0309 AFE_0309 275169 275242 + tRNA-Gly tRNA gene308 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0309 AFE_0310 AFE_0310 AFE_0310 275251 275326 + tRNA-Thr tRNA gene309 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0310 AFE_0311 AFE_0311 tuf-2 tuf-2 275372 276562 + translation elongation factor Tu identified by similarity to SP:P48864%3B match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485 gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0311 AFE_0312 AFE_0312 AFE_0312 276614 276691 + tRNA-Trp tRNA gene311 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0312 AFE_0313 AFE_0313 secE secE 276713 277063 + preprotein translocase%2C SecE subunit identified by similarity to SP:P16920%3B match to protein family HMM PF00584%3B match to protein family HMM TIGR00964 gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0313 AFE_0314 AFE_0314 nusG nusG 277064 277597 + transcription termination/antitermination factor NusG identified by match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922 gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0314 AFE_0315 AFE_0315 rplK rplK 277651 278079 + ribosomal protein L11 identified by similarity to SP:P02409%3B match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632 gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0315 AFE_0316 AFE_0316 rplA rplA 278083 278775 + ribosomal protein L1 identified by similarity to SP:P02384%3B match to protein family HMM PF00687%3B match to protein family HMM TIGR01169 gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0316 AFE_0317 AFE_0317 rplJ rplJ 278919 279440 + ribosomal protein L10 identified by similarity to SP:P02408%3B match to protein family HMM PF00466 gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0317 AFE_0318 AFE_0318 rplL rplL 279470 279856 + ribosomal protein L7/L12 identified by similarity to SP:P02395%3B match to protein family HMM PF00542%3B match to protein family HMM TIGR00855 gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0318 AFE_0319 AFE_0319 AFE_0319 279879 279977 - hypothetical protein identified by glimmer%3B putative gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0319 AFE_0320 AFE_0320 rpoB rpoB 279980 284068 + DNA-directed RNA polymerase%2C beta subunit identified by match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04561%3B match to protein family HMM PF04563%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013 gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0320 AFE_0321 AFE_0321 rpoC rpoC 284102 288256 + DNA-directed RNA polymerase%2C beta' subunit identified by similarity to SP:P00577%3B match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386 gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0321 AFE_0322 AFE_0322 rpsL rpsL 288366 288737 + ribosomal protein S12 identified by similarity to SP:P02367%3B match to protein family HMM PF00164%3B match to protein family HMM TIGR00981 gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0322 AFE_0323 AFE_0323 rpsG rpsG 288764 289234 + ribosomal protein S7 identified by similarity to SP:P02359%3B match to protein family HMM PF00177%3B match to protein family HMM TIGR01029 gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0323 AFE_0324 AFE_0324 fusA fusA 289267 291366 + translation elongation factor G identified by similarity to SP:P02996%3B match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484 gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0324 AFE_0325 AFE_0325 tuf-1 tuf-1 291387 292577 + translation elongation factor Tu identified by similarity to SP:P48864%3B match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485 gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0325 AFE_0326 AFE_0326 rpsJ rpsJ 292577 292885 + ribosomal protein S10 identified by similarity to SP:P02364%3B match to protein family HMM PF00338%3B match to protein family HMM TIGR01049 gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0326 AFE_0327 AFE_0327 rplC rplC 292903 293535 + ribosomal protein L3 identified by similarity to SP:P02386%3B match to protein family HMM PF00297 gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0327 AFE_0328 AFE_0328 rplD rplD 293546 294163 + ribosomal protein L4 identified by similarity to SP:P02388%3B match to protein family HMM PF00573 gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0328 AFE_0329 AFE_0329 rplW rplW 294160 294453 + ribosomal protein L23 identified by similarity to SP:P02424%3B match to protein family HMM PF00276 gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0329 AFE_0330 AFE_0330 rplB rplB 294470 295294 + ribosomal protein L2 identified by similarity to SP:P02387%3B match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171 gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0330 AFE_0331 AFE_0331 rpsS rpsS 295313 295588 + ribosomal protein S19 identified by similarity to SP:P02375%3B match to protein family HMM PF00203%3B match to protein family HMM TIGR01050 gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0331 AFE_0332 AFE_0332 rplV rplV 295600 295935 + ribosomal protein L22 identified by similarity to SP:P02423%3B match to protein family HMM PF00237%3B match to protein family HMM TIGR01044 gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0332 AFE_0333 AFE_0333 rpsC rpsC 295919 296605 + ribosomal protein S3 identified by similarity to SP:P02352%3B match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009 gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0333 AFE_0334 AFE_0334 rplP rplP 296618 297034 + ribosomal protein L16 identified by similarity to SP:P02414%3B match to protein family HMM PF00252%3B match to protein family HMM TIGR01164 gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0334 AFE_0335 AFE_0335 rpmC rpmC 297031 297228 + ribosomal protein L29 identified by similarity to SP:P02429%3B match to protein family HMM PF00831%3B match to protein family HMM TIGR00012 gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0335 AFE_0336 AFE_0336 rpS17 rpS17 297225 297500 + ribosomal protein S17 identified by similarity to SP:P02373%3B match to protein family HMM PF00366 gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0336 AFE_0337 AFE_0337 rplN rplN 297497 297865 + ribosomal protein L14 identified by similarity to SP:P02411%3B match to protein family HMM PF00238%3B match to protein family HMM TIGR01067 gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0337 AFE_0338 AFE_0338 rplX rplX 297875 298195 + ribosomal protein L24 identified by similarity to SP:P02425%3B match to protein family HMM PF00467%3B match to protein family HMM TIGR01079 gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0338 AFE_0339 AFE_0339 rplE rplE 298210 298752 + ribosomal protein L5 identified by similarity to SP:P02389%3B match to protein family HMM PF00281%3B match to protein family HMM PF00673 gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0339 AFE_0340 AFE_0340 rpsN rpsN 298766 298951 + ribosomal protein S14 identified by similarity to PIR:S43143%3B match to protein family HMM PF00253 gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0340 AFE_0341 AFE_0341 rpsH rpsH 298961 299356 + ribosomal protein S8 identified by similarity to SP:P02361%3B match to protein family HMM PF00410 gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0341 AFE_0342 AFE_0342 rplF rplF 299370 299894 + ribosomal protein L6 identified by similarity to SP:P02390%3B match to protein family HMM PF00347 gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0342 AFE_0343 AFE_0343 rplR rplR 299913 300266 + ribosomal protein L18 identified by similarity to SP:P46899%3B match to protein family HMM PF00861%3B match to protein family HMM TIGR00060 gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0343 AFE_0344 AFE_0344 rpsE rpsE 300279 300809 + ribosomal protein S5 identified by similarity to SP:P02356%3B match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021 gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0344 AFE_0345 AFE_0345 rpmD rpmD 300802 300987 + ribosomal protein L30 identified by similarity to SP:P02430%3B match to protein family HMM PF00327%3B match to protein family HMM TIGR01308 gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0345 AFE_0346 AFE_0346 rplO rplO 300984 301421 + ribosomal protein L15 identified by similarity to SP:P02413%3B match to protein family HMM PF00256%3B match to protein family HMM PF01305%3B match to protein family HMM TIGR01071 gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0346 AFE_0347 AFE_0347 secY secY 301421 302752 + preprotein translocase%2C SecY subunit identified by similarity to SP:P03844%3B match to protein family HMM PF00344%3B match to protein family HMM TIGR00967 gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0347 AFE_0348 AFE_0348 adk adk 302755 303411 + adenylate kinase identified by similarity to SP:P27142%3B match to protein family HMM PF00406%3B match to protein family HMM PF05191%3B match to protein family HMM TIGR01351 gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0348 AFE_0349 AFE_0349 infA infA 303412 303630 + translation initiation factor IF-1 identified by similarity to SP:P02998%3B match to protein family HMM PF00575%3B match to protein family HMM PF01176%3B match to protein family HMM TIGR00008 gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0349 AFE_0350 AFE_0350 rpmJ rpmJ 303639 303752 + ribosomal protein L36 identified by match to protein family HMM PF00444%3B match to protein family HMM TIGR01022 gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0350 AFE_0351 AFE_0351 rpsM rpsM 303816 304172 + ribosomal protein S13 identified by similarity to SP:P02369%3B match to protein family HMM PF00416 gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0351 AFE_0352 AFE_0352 rpsK rpsK 304190 304585 + ribosomal protein S11 identified by similarity to SP:P02366%3B match to protein family HMM PF00411 gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0352 AFE_0353 AFE_0353 rpsD rpsD 304606 305232 + ribosomal protein S4 identified by similarity to SP:P02354%3B match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017 gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0353 AFE_0354 AFE_0354 rpoA rpoA 305255 306274 + DNA-directed RNA polymerase%2C alpha subunit identified by match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027 gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0354 AFE_0355 AFE_0355 rplQ rplQ 306305 306679 + ribosomal protein L17 identified by similarity to SP:P02416%3B match to protein family HMM PF01196%3B match to protein family HMM TIGR00059 gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0355 AFE_0356 AFE_0356 dut dut 306843 307295 - deoxyuridine 5`-triphosphate nucleotidohydrolase identified by similarity to SP:P06968%3B match to protein family HMM PF00692%3B match to protein family HMM TIGR00576 gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0356 AFE_0357 AFE_0357 coaBC coaBC 307288 308544 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase identified by match to protein family HMM PF02441%3B match to protein family HMM PF04127%3B match to protein family HMM TIGR00521 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0357 AFE_0358 AFE_0358 radC radC 308577 309251 + DNA repair protein RadC identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608 gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0358 AFE_0359 AFE_0359 dgkA dgkA 309248 309613 + diacylglycerol kinase identified by similarity to SP:P19638%3B match to protein family HMM PF01219 gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0359 AFE_0360 AFE_0360 AFE_0360 309617 310363 + PAP2 family protein identified by match to protein family HMM PF01569 gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0360 AFE_0361 AFE_0361 AFE_0361 310347 310886 + hypothetical protein identified by glimmer%3B putative gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0361 AFE_0362 AFE_0362 AFE_0362 310910 311266 + conserved hypothetical protein identified by similarity to GB:BAB50383.1 gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0362 AFE_0363 AFE_0363 AFE_0363 311378 311755 + conserved hypothetical protein identified by similarity to PIR:C70335 gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0363 AFE_0364 AFE_0364 AFE_0364 311727 312311 + hypoxanthine-guanine phosphoribosyltransferase%2C putative identified by similarity to SP:P37472%3B match to protein family HMM PF00156 gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0364 AFE_0365 AFE_0365 mtaP mtaP 312311 313123 + methylthioadenosine phosphorylase identified by match to protein family HMM PF00896%3B match to protein family HMM TIGR01694 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0365 AFE_0366 AFE_0366 gor gor 313146 314495 - glutathione reductase identified by similarity to SP:P06715%3B match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01421 gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0366 AFE_0367 AFE_0367 AFE_0367 314585 315328 - AhpC/TSA family/glutaredoxin domain protein identified by match to protein family HMM PF00462%3B match to protein family HMM PF00578%3B match to protein family HMM PF08534%3B match to protein family HMM TIGR02190 gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0367 AFE_0368 AFE_0368 serB serB 315464 316447 - phosphoserine phosphatase identified by similarity to SP:P06862%3B match to protein family HMM PF00702%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR00338%3B match to protein family HMM TIGR01488 gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0368 AFE_0369 AFE_0369 mfd mfd 316579 320028 - transcription-repair coupling factor identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00580 gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0369 AFE_0370 AFE_0370 ispD ispD 320180 320893 + 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase identified by similarity to SP:Q46893%3B match to protein family HMM PF01128%3B match to protein family HMM TIGR00453 gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0370 AFE_0371 AFE_0371 ispF ispF 320904 321377 + 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase identified by similarity to SP:P36663%3B match to protein family HMM PF02542%3B match to protein family HMM TIGR00151 gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0371 AFE_0372 AFE_0372 truD truD 321370 322458 + tRNA pseudouridine synthase D identified by similarity to SP:Q57261%3B match to protein family HMM PF01142%3B match to protein family HMM TIGR00094 gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0372 AFE_0373 AFE_0373 AFE_0373 322534 323010 + transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376%3B match to protein family HMM PF09278 gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0373 AFE_0374 AFE_0374 AFE_0374 323078 323656 - Smr domain protein identified by match to protein family HMM PF01713 gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0374 AFE_0375 AFE_0375 trxB trxB 323660 324631 - thioredoxin-disulfide reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01292 gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0375 AFE_0376 AFE_0376 ftsK ftsK 324893 327195 + cell division protein FtsK%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0376 AFE_0377 AFE_0377 AFE_0377 327167 327859 + outer membrane lipoprotein carrier protein LolA%2C putative identified by similarity to SP:P39178%3B match to protein family HMM PF03548%3B match to protein family HMM TIGR00547 gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0377 AFE_0378 AFE_0378 AFE_0378 327878 328948 + outer membrane protein transport protein%2C OMPP1/FadL/TodX family identified by match to protein family HMM PF03349 gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0378 AFE_0379 AFE_0379 AFE_0379 328976 330304 + ATPase%2C AAA family identified by match to protein family HMM PF00004%3B match to protein family HMM PF01078%3B match to protein family HMM PF07728 gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0379 AFE_0380 AFE_0380 serS serS 330297 331562 + seryl-tRNA synthetase identified by similarity to SP:P09156%3B match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414 gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0380 AFE_0381 AFE_0381 AFE_0381 331566 331799 + conserved hypothetical protein identified by similarity to GB:CAD84097.1 gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0381 AFE_0382 AFE_0382 AFE_0382 331796 332839 + ErfK/YbiS/YcfS/YnhG family protein identified by match to protein family HMM PF01476%3B match to protein family HMM PF03734 gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0382 AFE_0383 AFE_0383 AFE_0383 333009 333087 + tRNA-Met tRNA gene382 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0383 AFE_0384 AFE_0384 rrsB rrsB 333233 334702 + 16S ribosomal RNA rRNA gene383 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0384 AFE_0385 AFE_0385 AFE_0385 334791 334869 + tRNA-Ile tRNA gene384 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0385 AFE_0386 AFE_0386 AFE_0386 334871 334948 + tRNA-Ala tRNA gene385 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0386 AFE_0387 AFE_0387 rrlB rrlB 335188 338076 + 23S ribosomal RNA rRNA gene386 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0387 AFE_0388 AFE_0388 rrfB rrfB 338169 338288 + 5S ribosomal RNA rRNA gene387 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0388 AFE_0389 AFE_0389 AFE_0389 338414 338866 + lipoprotein%2C putative identified by similarity to SP:Q9HV53%3B match to protein family HMM PF02576 gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0389 AFE_0390 AFE_0390 nusA nusA 338898 340379 + transcription termination factor NusA identified by match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF08529%3B match to protein family HMM TIGR01953%3B match to protein family HMM TIGR01954 gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0390 AFE_0391 AFE_0391 infB infB 340438 343065 + translation initiation factor IF-2 identified by similarity to SP:P02995%3B match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM PF08364%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487 gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0391 AFE_0392 AFE_0392 rbfA rbfA 343073 343459 + ribosome-binding factor A identified by match to protein family HMM PF02033 gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0392 AFE_0393 AFE_0393 truB truB 343456 344337 + tRNA pseudouridine synthase B identified by similarity to SP:P09171%3B match to protein family HMM PF01509%3B match to protein family HMM PF09157%3B match to protein family HMM TIGR00431 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0393 AFE_0394 AFE_0394 rpsO rpsO 344376 344645 + ribosomal protein S15 identified by similarity to SP:P05766%3B match to protein family HMM PF00312%3B match to protein family HMM TIGR00952 gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0394 AFE_0395 AFE_0395 pnp pnp 344662 346734 + polyribonucleotide nucleotidyltransferase identified by similarity to SP:P05055%3B match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726%3B match to protein family HMM PF07650 gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0395 AFE_0396 AFE_0396 AFE_0396 346789 348063 + peptidase%2C M16 family identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0396 AFE_0397 AFE_0397 AFE_0397 348066 348818 - hydroxyacylglutathione hydrolase%2C putative identified by similarity to SP:Q47677%3B match to protein family HMM PF00753%3B match to protein family HMM TIGR03413 gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0397 AFE_0398 AFE_0398 AFE_0398 348927 349724 + conserved hypothetical protein identified by similarity to GB:CAD15216.1 gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0398 AFE_0399 AFE_0399 rnhA-2 rnhA-2 349706 350182 + ribonuclease HI identified by match to protein family HMM PF00075 gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0399 AFE_0400 AFE_0400 dnaQ dnaQ 350173 350919 + DNA polymerase III%2C epsilon subunit identified by similarity to SP:P03007%3B match to protein family HMM PF00929%3B match to protein family HMM TIGR00573%3B match to protein family HMM TIGR01406 gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0400 AFE_0401 AFE_0401 AFE_0401 350924 351334 - roadblock/LC7 domain protein identified by match to protein family HMM PF03259 gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0401 AFE_0402 AFE_0402 gloA gloA 351426 351833 - lactoylglutathione lyase identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR00068 gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0402 AFE_0403 AFE_0403 AFE_0403 351844 352161 - conserved hypothetical protein identified by similarity to GB:AAN48171.1 gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0403 AFE_0404 AFE_0404 argG argG 352166 353365 - argininosuccinate synthase identified by similarity to SP:Q9HY84%3B match to protein family HMM PF00764%3B match to protein family HMM TIGR00032 gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0404 AFE_0405 AFE_0405 argF argF 353369 354304 - ornithine carbamoyltransferase identified by similarity to SP:P18186%3B match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00658 gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0405 AFE_0406 AFE_0406 argD argD 354301 355467 - acetylornithine aminotransferase identified by similarity to SP:P54752%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00707 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0406 AFE_0407 AFE_0407 AFE_0407 355467 356693 - aspartate kinase%2C monofunctional class identified by similarity to SP:P41403%3B match to protein family HMM PF00696%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00656%3B match to protein family HMM TIGR00657 gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0407 AFE_0408 AFE_0408 AFE_0408 356801 357121 - hypothetical protein identified by glimmer%3B putative gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0408 AFE_0409 AFE_0409 AFE_0409 357166 357651 - conserved domain protein identified by similarity to GB:AAN79743.1%3B match to protein family HMM PF08238 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0409 AFE_0410 AFE_0410 AFE_0410 357635 357793 - hypothetical protein identified by glimmer%3B putative gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0410 AFE_0411 AFE_0411 AFE_0411 357771 358016 - hypothetical protein identified by glimmer%3B putative gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0411 AFE_0412 AFE_0412 AFE_0412 358052 358228 - addiction module toxin%2C Txe/YoeB family identified by match to protein family HMM PF06769%3B match to protein family HMM TIGR02116 gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0412 AFE_0413 AFE_0413 AFE_0413 358292 358669 - PIN domain protein identified by match to protein family HMM PF01850 gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0413 AFE_0414 AFE_0414 AFE_0414 358675 358920 - prevent host death protein identified by similarity to SP:Q06253 gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0414 AFE_0415 AFE_0415 AFE_0415 359224 359421 + hypothetical protein identified by glimmer%3B putative gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0415 AFE_0416 AFE_0416 AFE_0416 359479 360015 + pilin%2C putative identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0416 AFE_0417 AFE_0417 AFE_0417 360329 360574 + hypothetical protein identified by glimmer%3B putative gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0417 AFE_0418 AFE_0418 AFE_0418 360588 360803 + hypothetical protein identified by glimmer%3B putative gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0418 AFE_0419 AFE_0419 tal tal 360910 362001 + transaldolase identified by match to protein family HMM PF00923%3B match to protein family HMM TIGR00876 gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0419 AFE_0420 AFE_0420 fabI fabI 362035 362808 - enoyl-(acyl-carrier-protein) reductase identified by similarity to SP:P29132%3B match to protein family HMM PF00106 gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0420 AFE_0421 AFE_0421 mltD mltD 362833 364671 - membrane-bound lytic murein transglycosylase D identified by similarity to SP:P23931%3B match to protein family HMM PF01464%3B match to protein family HMM PF01476 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0421 AFE_0422 AFE_0422 gltX-2 gltX-2 364896 366296 + glutamyl-tRNA synthetase identified by similarity to SP:P04805%3B match to protein family HMM PF00749%3B match to protein family HMM TIGR00464 gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0422 AFE_0423 AFE_0423 AFE_0423 366408 368345 + aconitate hydratase%2C putative identified by match to protein family HMM PF00330%3B match to protein family HMM PF00694%3B match to protein family HMM TIGR01342 gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0423 AFE_0424 AFE_0424 icd icd 368348 369634 + isocitrate dehydrogenase%2C NADP-dependent identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00183 gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0424 AFE_0425 AFE_0425 sucC sucC 369644 370807 + succinyl-CoA synthase%2C beta subunit identified by similarity to SP:P07460%3B match to protein family HMM PF00549%3B match to protein family HMM PF08442%3B match to protein family HMM TIGR01016 gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0425 AFE_0426 AFE_0426 AFE_0426 370809 371153 + conserved domain protein gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0426 AFE_0427 AFE_0427 sucD sucD 371150 372022 + succinyl-CoA synthetase%2C alpha subunit identified by similarity to SP:P07459%3B match to protein family HMM PF00549%3B match to protein family HMM PF02629%3B match to protein family HMM TIGR01019 gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0427 AFE_0428 AFE_0428 nadE nadE 372022 373671 + glutamine-dependent NAD+ synthetase identified by similarity to SP:Q03638%3B match to protein family HMM PF00795%3B match to protein family HMM PF02540%3B match to protein family HMM TIGR00552 gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0428 AFE_0429 AFE_0429 glnB-2 glnB-2 373668 374006 + nitrogen regulatory protein P-II 1 identified by similarity to SP:P05826%3B match to protein family HMM PF00543 gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0429 AFE_0430 AFE_0430 AFE_0430 374040 374795 - competence lipoprotein ComL%2C putative identified by similarity to SP:Q50985%3B match to protein family HMM PF00515%3B match to protein family HMM TIGR03302 gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0430 AFE_0431 AFE_0431 rluD rluD 374824 375783 + ribosomal large subunit pseudouridine synthase D identified by similarity to SP:P33643%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0431 AFE_0432 AFE_0432 AFE_0432 375800 376525 + conserved hypothetical protein TIGR00726 identified by similarity to GB:AAQ59864.1%3B match to protein family HMM PF02578%3B match to protein family HMM TIGR00726 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0432 AFE_0433 AFE_0433 AFE_0433 376527 377075 + dioxygenase%2C ARD/ARD' family identified by match to protein family HMM PF03079%3B match to protein family HMM PF07883 gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0433 AFE_0434 AFE_0434 ccbL2 ccbL2 377072 378244 + ribulose bisphosphate carboxylase%2C large subunit 2 identified by match to protein family HMM PF00016 gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0434 AFE_0435 AFE_0435 AFE_0435 378244 378897 + HAD-superfamily hydrolase%2C subfamily IB identified by match to protein family HMM PF00702 gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0435 AFE_0436 AFE_0436 AFE_0436 378887 379507 + aldolase%2C class II identified by match to protein family HMM PF00596%3B match to protein family HMM TIGR03328 gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0436 AFE_0437 AFE_0437 AFE_0437 379509 380030 + ACT domain protein identified by match to protein family HMM PF01842 gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0437 AFE_0438 AFE_0438 def-1 def-1 380030 380533 + polypeptide deformylase identified by similarity to SP:P27251%3B match to protein family HMM PF01327%3B match to protein family HMM TIGR00079 gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0438 AFE_0439 AFE_0439 AFE_0439 380607 382193 - amino acid permease family protein identified by match to protein family HMM PF00324 gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0439 AFE_0440 AFE_0440 AFE_0440 382178 382294 - hypothetical protein identified by glimmer%3B putative gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0440 AFE_0441 AFE_0441 rfbB rfbB 382357 383496 - dTDP-glucose 4%2C6-dehydratase identified by similarity to SP:P55295%3B match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01181 gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0441 AFE_0442 AFE_0442 rfbD rfbD 383516 384385 - dTDP-4-dehydrorhamnose reductase identified by similarity to GB:AAO88915.1%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM TIGR01214 gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0442 AFE_0443 AFE_0443 AFE_0443 384415 384921 - hypothetical protein identified by glimmer%3B putative gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0443 AFE_0444 AFE_0444 AFE_0444 384921 385253 - conserved hypothetical protein identified by similarity to GB:AAQ59662.1 gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0444 AFE_0445 AFE_0445 galU galU 385318 386214 - UTP-glucose-1-phosphate uridylyltransferase identified by similarity to SP:Q05852%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR01099 gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0445 AFE_0446 AFE_0446 AFE_0446 386292 386987 - conserved hypothetical protein identified by similarity to GB:AAO91056.1 gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0446 AFE_0447 AFE_0447 AFE_0447 387060 388445 - sigma-54 dependent DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF07728 gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0447 AFE_0448 AFE_0448 AFE_0448 388447 388953 - lipoprotein%2C putative gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0448 AFE_0449 AFE_0449 AFE_0449 388953 390437 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0449 AFE_0450 AFE_0450 recN recN 390600 392276 - DNA repair protein RecN identified by similarity to SP:P05824%3B match to protein family HMM PF02463%3B match to protein family HMM TIGR00634 gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0450 AFE_0451 AFE_0451 ppnK ppnK 392276 393163 - ATP-NAD kinase identified by match to protein family HMM PF01513 gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0451 AFE_0452 AFE_0452 AFE_0452 393243 393968 - transcriptional activator%2C putative%2C Baf family identified by match to protein family HMM PF03309%3B match to protein family HMM TIGR00671 gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0452 AFE_0453 AFE_0453 birA birA 393965 394870 - birA bifunctional protein identified by match to protein family HMM PF02237%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00121 gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0453 AFE_0454 AFE_0454 proA proA 394887 396143 - gamma-glutamyl phosphate reductase identified by similarity to SP:P54903%3B match to protein family HMM PF00171%3B match to protein family HMM TIGR00407 gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0454 AFE_0455 AFE_0455 AFE_0455 396310 397494 - membrane protein%2C putative identified by match to protein family HMM PF07690 gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0455 AFE_0456 AFE_0456 AFE_0456 396206 396340 + hypothetical protein identified by glimmer%3B putative gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0456 AFE_0457 AFE_0457 holA holA 397555 398547 - DNA polymerase III%2C delta subunit identified by similarity to SP:P28630%3B match to protein family HMM PF06144%3B match to protein family HMM TIGR01128 gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0457 AFE_0458 AFE_0458 AFE_0458 398549 399067 - rare lipoprotein B%2C putative identified by similarity to SP:P10101 gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0458 AFE_0459 AFE_0459 leuS leuS 399064 401529 - leucyl-tRNA synthetase identified by similarity to SP:P07813%3B match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00396 gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0459 AFE_0460 AFE_0460 wrbA wrbA 401786 402388 + trp repressor binding protein identified by similarity to SP:P30849%3B match to protein family HMM PF00258%3B match to protein family HMM TIGR01755 gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0460 AFE_0461 AFE_0461 AFE_0461 402405 403046 + YceI-like family protein identified by match to protein family HMM PF04264 gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0461 AFE_0462 AFE_0462 AFE_0462 403117 403908 + d-alanyl-d-alanine dipeptidase%2C putative identified by similarity to SP:P77790%3B match to protein family HMM PF01427 gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0462 AFE_0463 AFE_0463 AFE_0463 403957 404760 + formamidopyrimidine-DNA glycosylase%2C putative identified by match to protein family HMM PF06831 gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0463 AFE_0464 AFE_0464 AFE_0464 404769 405281 + hypothetical protein identified by glimmer%3B putative gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0464 AFE_0465 AFE_0465 AFE_0465 405436 406611 + cation efflux family protein identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0465 AFE_0466 AFE_0466 glnA glnA 406766 408181 + glutamine synthetase%2C type I identified by similarity to SP:P06711%3B match to protein family HMM PF00120%3B match to protein family HMM PF03951%3B match to protein family HMM TIGR00653 gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0466 AFE_0467 AFE_0467 AFE_0467 408385 408897 + conserved hypothetical protein identified by similarity to GB:AAQ61252.1 gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0467 AFE_0468 AFE_0468 surE surE 408996 409748 + acid phosphatase SurE identified by similarity to SP:P36664%3B match to protein family HMM PF01975%3B match to protein family HMM TIGR00087 gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0468 AFE_0469 AFE_0469 pcm-2 pcm-2 409730 410455 + protein-L-isoaspartate O-methyltransferase identified by similarity to SP:P24206%3B match to protein family HMM PF01135%3B match to protein family HMM TIGR00080 gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0469 AFE_0470 AFE_0470 rpoS rpoS 410427 411380 + RNA polymerase sigma-38 factor identified by similarity to SP:P13445%3B match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937 gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0470 AFE_0471 AFE_0471 AFE_0471 411403 411777 - conserved hypothetical protein identified by similarity to GB:CAD86279.1%3B match to protein family HMM PF04430 gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0471 AFE_0472 AFE_0472 AFE_0472 411872 413053 + aminotransferase%2C class I/II identified by similarity to GB:AAO58485.1%3B match to protein family HMM PF00155 gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0472 AFE_0473 AFE_0473 metM metM 413065 414375 + homoserine dehydrogenase identified by similarity to SP:P08499%3B match to protein family HMM PF00742%3B match to protein family HMM PF01113%3B match to protein family HMM PF01842%3B match to protein family HMM PF03447 gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0473 AFE_0474 AFE_0474 thrC thrC 414427 415557 + threonine synthase identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260 gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0474 AFE_0475 AFE_0475 AFE_0475 415557 416522 + conserved hypothetical protein identified by similarity to GB:AAQ60147.1 gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0475 AFE_0476 AFE_0476 recJ recJ 416523 418340 + single-stranded-DNA-specific exonuclease RecJ identified by similarity to SP:P21893%3B match to protein family HMM PF01368 gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0476 AFE_0477 AFE_0477 AFE_0477 418549 418779 + virulence protein%2C putative identified by similarity to SP:Q05459%3B match to protein family HMM PF04014 gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0477 AFE_0478 AFE_0478 AFE_0478 418785 419189 + virulence-associated protein%2C putative identified by similarity to PIR:B49205%3B match to protein family HMM PF01850%3B match to protein family HMM PF07647 gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0478 AFE_0479 AFE_0479 prfB prfB 419322 420420 + peptide chain release factor 2%2C programmed frameshift Translation involves an autoregulatory +1 programmed frameshift at a TGA codon near the N-terminus%3B identified by similarity to SP:P28353%3B match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00020 gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0479 AFE_0480 AFE_0480 lysS lysS 420457 421947 + lysyl-tRNA synthetase identified by similarity to SP:P14825%3B match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00499 gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0480 AFE_0481 AFE_0481 lolC lolC 421944 423188 + lipoprotein releasing system transmembrane protein LolC identified by similarity to SP:P75956%3B match to protein family HMM PF02687%3B match to protein family HMM TIGR02212 gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0481 AFE_0482 AFE_0482 AFE_0482 423873 424433 - conserved hypothetical protein identified by similarity to PIR:B83271 gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0482 AFE_0483 AFE_0483 lolD lolD 423181 423876 + lipoprotein releasing system%2C ATP-binding protein LolD identified by similarity to SP:P75957%3B match to protein family HMM PF00005 gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0483 AFE_0484 AFE_0484 AFE_0484 424418 426628 + DNA internalization-related competence protein ComEC/Rec2 identified by match to protein family HMM PF03772%3B match to protein family HMM TIGR00360 gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0484 AFE_0485 AFE_0485 AFE_0485 426721 427341 + MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618 gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0485 AFE_0486 AFE_0486 AFE_0486 427338 427742 + biopolymer transport protein%2C ExbD/TolR family identified by match to protein family HMM PF02472 gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0486 AFE_0487 AFE_0487 AFE_0487 427851 428432 + conserved hypothetical protein identified by similarity to PIR:F64553%3B match to protein family HMM PF04028 gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0487 AFE_0488 AFE_0488 AFE_0488 428429 429574 + hypothetical protein identified by glimmer%3B putative gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0488 AFE_0489 AFE_0489 lpxK lpxK 429571 430569 + tetraacyldisaccharide 4'-kinase identified by match to protein family HMM PF02606%3B match to protein family HMM TIGR00682 gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0489 AFE_0490 AFE_0490 AFE_0490 430569 430751 + conserved hypothetical protein identified by similarity to GB:CAD16238.1%3B match to protein family HMM PF03966 gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0490 AFE_0491 AFE_0491 kdsB kdsB 430748 431509 + 3-deoxy-D-manno-octulosonate cytidylyltransferase identified by match to protein family HMM PF02348%3B match to protein family HMM TIGR00466 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0491 AFE_0492 AFE_0492 ppa ppa 431531 432052 + inorganic pyrophosphatase identified by match to protein family HMM PF00719 gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0492 AFE_0493 AFE_0493 AFE_0493 432117 432497 + hypothetical protein identified by glimmer%3B putative gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0493 AFE_0494 AFE_0494 AFE_0494 432519 433014 - phage integrase family protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0494 AFE_0495 AFE_0495 AFE_0495 433554 433781 + hypothetical protein identified by glimmer%3B putative gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0495 AFE_0496 AFE_0496 AFE_0496 433901 434497 + bacterial transferase hexapeptide repeat protein gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0496 AFE_0497 AFE_0497 AFE_0497 434409 435577 + oxidoreductase%2C aldo/keto reductase family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAM42939.1 pseudogene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0497 AFE_0498 AFE_0498 AFE_0498 435706 436143 + conserved domain protein identified by similarity to GB:BAC72705.1%3B match to protein family HMM PF07366 gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0498 AFE_0499 AFE_0499 AFE_0499 436230 437363 + hypothetical protein identified by glimmer%3B putative gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0499 AFE_0500 AFE_0500 AFE_0500 437450 437863 + conserved hypothetical protein identified by similarity to GB:AAQ58729.1%3B match to protein family HMM PF04828 gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0500 AFE_0501 AFE_0501 AFE_0501 437940 438293 + conserved hypothetical protein identified by similarity to GB:AAQ57956.1 gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0501 AFE_0502 AFE_0502 AFE_0502 438369 438794 + conserved hypothetical protein identified by similarity to GB:CAD17748.1%3B match to protein family HMM PF06983 gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0502 AFE_0503 AFE_0503 AFE_0503 439305 439445 + conserved domain protein identified by similarity to PIR:T44273 gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0503 AFE_0504 AFE_0504 AFE_0504 440054 440242 - hypothetical protein identified by glimmer%3B putative gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0504 AFE_0505 AFE_0505 AFE_0505 439534 440082 + hypothetical protein identified by glimmer%3B putative gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0505 AFE_0506 AFE_0506 AFE_0506 440216 441076 + hypothetical protein identified by glimmer%3B putative gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0506 AFE_0507 AFE_0507 AFE_0507 441199 442443 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0507 AFE_0508 AFE_0508 AFE_0508 442440 443381 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0508 AFE_0509 AFE_0509 AFE_0509 443374 444372 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0509 AFE_0510 AFE_0510 AFE_0510 444547 445074 + transposase%2C degenerate gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0510 AFE_0511 AFE_0511 AFE_0511 445078 445917 + general secretion pathway protein A%2C putative%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to SP:P45754 pseudogene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0511 AFE_0512 AFE_0512 AFE_0512 445928 446131 + hypothetical protein identified by glimmer%3B putative gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0512 AFE_0513 AFE_0513 AFE_0513 446517 446723 + conserved hypothetical protein identified by similarity to GB:AAM71824.1 gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0513 AFE_0514 AFE_0514 AFE_0514 446705 446824 + hypothetical protein identified by glimmer%3B putative gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0514 AFE_0515 AFE_0515 AFE_0515 447712 447924 + hypothetical protein identified by glimmer%3B putative gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0515 AFE_0516 AFE_0516 AFE_0516 448001 448267 - hypothetical protein identified by glimmer%3B putative gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0516 AFE_0518 AFE_0518 AFE_0518 448643 449236 + conserved hypothetical protein identified by match to protein family HMM PF03167 gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0518 AFE_0519 AFE_0519 AFE_0519 449303 450778 - conserved hypothetical protein identified by similarity to SP:Q92RB2%3B match to protein family HMM PF02696 gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0519 AFE_0520 AFE_0520 clpA clpA 450782 453040 - ATP-dependent Clp protease%2C ATP-binding subunit ClpA identified by similarity to SP:P15716%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02639 gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0520 AFE_0521 AFE_0521 AFE_0521 453044 453388 - ATP-dependent Clp protease adaptor protein ClpS identified by similarity to SP:Q8UFN4%3B match to protein family HMM PF02617 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0521 AFE_0522 AFE_0522 AFE_0522 453529 454305 - peptidyl-prolyl cis-trans isomerase%2C PPIC-type identified by similarity to GB:CAE35777.1%3B match to protein family HMM PF00639 gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0522 AFE_0523 AFE_0523 thiJ thiJ 454321 454932 - 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme identified by similarity to SP:Q46948%3B match to protein family HMM PF01965%3B match to protein family HMM TIGR01383 gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0523 AFE_0524 AFE_0524 ctpA ctpA 455070 456518 - carboxy-terminal peptidase identified by similarity to SP:Q44879%3B match to protein family HMM PF00595%3B match to protein family HMM PF03572%3B match to protein family HMM TIGR00225 gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0524 AFE_0525 AFE_0525 AFE_0525 456582 458000 - M23/M37 peptidase domain protein identified by match to protein family HMM PF01551 gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0525 AFE_0526 AFE_0526 gpmI-2 gpmI-2 458004 459533 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase identified by match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307 gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0526 AFE_0527 AFE_0527 AFE_0527 459601 462087 - glycogen/starch/alpha-glucan phosphorylase identified by match to protein family HMM PF00343%3B match to protein family HMM TIGR02093 gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0527 AFE_0528 AFE_0528 AFE_0528 462232 462681 + conserved hypothetical protein identified by similarity to GB:AAN50762.1 gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0528 AFE_0529 AFE_0529 AFE_0529 462715 463101 + rhodanese-like domain protein identified by match to protein family HMM PF00581 gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0529 AFE_0530 AFE_0530 AFE_0530 463114 464055 - carbohydrate kinase%2C PfkB family identified by match to protein family HMM PF00294 gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0530 AFE_0531 AFE_0531 AFE_0531 464176 464781 + conserved domain protein identified by similarity to GB:AAK57731.1 gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0531 AFE_0532 AFE_0532 metK metK 464925 466094 + S-adenosylmethionine synthetase identified by similarity to SP:P04384%3B match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0532 AFE_0533 AFE_0533 AFE_0533 466181 466276 + hypothetical protein identified by glimmer%3B putative gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0533 AFE_0534 AFE_0534 ahcY ahcY 466291 467688 + adenosylhomocysteinase identified by match to protein family HMM PF00670%3B match to protein family HMM PF05221%3B match to protein family HMM TIGR00936 gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0534 AFE_0535 AFE_0535 metF metF 467688 468506 + 5%2C10-methylenetetrahydrofolate reductase identified by similarity to SP:P00394%3B match to protein family HMM PF02219%3B match to protein family HMM TIGR00676 gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0535 AFE_0536 AFE_0536 cbbP cbbP 468611 469483 + phosphoribulokinase identified by similarity to SP:P12033%3B match to protein family HMM PF00485 gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0536 AFE_0537 AFE_0537 AFE_0537 469416 470297 + PAP2 family protein identified by match to protein family HMM PF01569 gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0537 AFE_0538 AFE_0538 AFE_0538 470323 471849 - conserved domain protein identified by match to protein family HMM PF05670 gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0538 AFE_0539 AFE_0539 AFE_0539 471885 473558 - sulfate adenylyltransferase%2C putative/adenylylsulfate kinase identified by match to protein family HMM PF01583%3B match to protein family HMM PF01747%3B match to protein family HMM TIGR00455 gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0539 AFE_0540 AFE_0540 AFE_0540 473569 474138 - adenine phosphoribosyltransferase%2C putative identified by similarity to SP:Q59049%3B match to protein family HMM PF00156 gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0540 AFE_0541 AFE_0541 AFE_0541 474197 474328 + hypothetical protein identified by glimmer%3B putative gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0541 AFE_0542 AFE_0542 groEL groEL 474399 476054 - chaperonin%2C 60 kDa identified by similarity to SP:P31293%3B match to protein family HMM PF00118%3B match to protein family HMM TIGR02348 gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0542 AFE_0543 AFE_0543 groES groES 476101 476391 - chaperonin%2C 10 kDa identified by similarity to SP:P26879%3B match to protein family HMM PF00166 gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0543 AFE_0544 AFE_0544 AFE_0544 476519 477349 - conserved hypothetical protein identified by similarity to PIR:AG2426 gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0544 AFE_0545 AFE_0545 dsbD dsbD 477663 479513 + thiol:disulfide interchange protein DsbD identified by similarity to SP:P36655%3B match to protein family HMM PF02683 gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0545 AFE_0546 AFE_0546 AFE_0546 479533 479745 - conserved hypothetical protein identified by similarity to GB:AAO91158.1 gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0546 AFE_0547 AFE_0547 ilvE ilvE 479750 480673 - branched-chain amino acid aminotransferase identified by match to protein family HMM PF01063%3B match to protein family HMM TIGR01122 gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0547 AFE_0548 AFE_0548 glnE glnE 480686 483550 - glutamate-ammonia-ligase adenylyltransferase identified by similarity to SP:P30870%3B match to protein family HMM PF03710 gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0548 AFE_0549 AFE_0549 AFE_0549 483763 487395 + conserved hypothetical protein identified by similarity to PIR:E82325 gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0549 AFE_0550 AFE_0550 AFE_0550 487465 488691 - ISAfe3%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0550 AFE_0551 AFE_0551 AFE_0551 489001 489849 + hydrolase%2C carbon-nitrogen family identified by match to protein family HMM PF00795 gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0551 AFE_0552 AFE_0552 AFE_0552 490047 491810 + ABC transporter%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM PF05992%3B match to protein family HMM PF06472 gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0552 AFE_0553 AFE_0553 AFE_0553 491832 492407 + conserved hypothetical protein identified by similarity to GB:CAD76995.1%3B match to protein family HMM PF00578%3B match to protein family HMM PF08534 gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0553 AFE_0554 AFE_0554 AFE_0554 492431 492649 - hypothetical protein identified by glimmer%3B putative gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0554 AFE_0555 AFE_0555 lspA lspA 492899 493357 - signal peptidase II identified by similarity to SP:P17942%3B match to protein family HMM PF01252%3B match to protein family HMM TIGR00077 gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0555 AFE_0556 AFE_0556 ileS ileS 493357 496170 - isoleucyl-tRNA synthetase identified by similarity to SP:P00956%3B match to protein family HMM PF00133%3B match to protein family HMM PF06827%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00392 gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0556 AFE_0557 AFE_0557 ribF ribF 496173 497105 - riboflavin biosynthesis protein RibF identified by similarity to SP:P08391%3B match to protein family HMM PF01687%3B match to protein family HMM PF06574%3B match to protein family HMM TIGR00083 gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0557 AFE_0558 AFE_0558 AFE_0558 497204 497590 - conserved hypothetical protein identified by similarity to GB:AAN47976.1 gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0558 AFE_0559 AFE_0559 mviN mviN 497649 499202 - integral membrane protein MviN identified by match to protein family HMM PF03023%3B match to protein family HMM TIGR01695 gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0559 AFE_0560 AFE_0560 AFE_0560 499528 499896 - hypothetical protein identified by glimmer%3B putative gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0560 AFE_0561 AFE_0561 AFE_0561 499216 499575 + hypothetical protein identified by glimmer%3B putative gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0561 AFE_0562 AFE_0562 AFE_0562 500146 501009 + yicC family protein identified by similarity to SP:P23839%3B match to protein family HMM PF03755%3B match to protein family HMM PF08340%3B match to protein family HMM TIGR00255 gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0562 AFE_0563 AFE_0563 gmk gmk 501016 501654 + guanylate kinase identified by similarity to SP:P24234%3B match to protein family HMM PF00625 gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0563 AFE_0564 AFE_0564 rpoZ rpoZ 501678 501953 + DNA-directed RNA polymerase%2C omega subunit identified by match to protein family HMM PF01192%3B match to protein family HMM TIGR00690 gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0564 AFE_0565 AFE_0565 spoT spoT 502012 504216 + guanosine-3%2C5-bis(diphosphate) 3-pyrophosphohydrolase identified by similarity to SP:P17580%3B match to protein family HMM PF01842%3B match to protein family HMM PF01966%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691 gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0565 AFE_0566 AFE_0566 AFE_0566 504232 504621 + endoribonuclease L-PSP%2C putative identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004 gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0566 AFE_0567 AFE_0567 AFE_0567 504623 504838 + conserved hypothetical protein identified by similarity to GB:AAL95505.1 gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0567 AFE_0568 AFE_0568 recG recG 504840 506894 + ATP-dependent DNA helicase RecG identified by similarity to SP:P24230%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF01336%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00643 gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0568 AFE_0569 AFE_0569 AFE_0569 506987 507832 + ErfK/YbiS/YcfS/YnhG family identified by match to protein family HMM PF03734 gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0569 AFE_0570 AFE_0570 hemG hemG 507844 509184 - protoporphyrinogen oxidase identified by similarity to SP:P56601%3B match to protein family HMM PF01266%3B match to protein family HMM PF01593%3B match to protein family HMM TIGR00562 gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0570 AFE_0571 AFE_0571 AFE_0571 509189 510232 - membrane protein%2C putative identified by match to protein family HMM PF01594 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0571 AFE_0572 AFE_0572 AFE_0572 510541 511335 + conserved hypothetical protein identified by similarity to SP:Q96YW6%3B match to protein family HMM PF01875 gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0572 AFE_0573 AFE_0573 AFE_0573 511316 511924 + conserved hypothetical protein TIGR00296 identified by similarity to PIR:B64401%3B match to protein family HMM PF01871%3B match to protein family HMM TIGR00296 gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0573 AFE_0574 AFE_0574 AFE_0574 511917 513002 + radical SAM domain protein identified by match to protein family HMM PF04055 gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0574 AFE_0575 AFE_0575 AFE_0575 513010 514344 - type I secretion outer membrane protein%2C TolC family identified by similarity to SP:P02930%3B match to protein family HMM PF02321%3B match to protein family HMM TIGR01844 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0575 AFE_0576 AFE_0576 pabB pabB 514510 515898 + para-aminobenzoate synthase%2C component I identified by similarity to SP:P05041%3B match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00553 gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0576 AFE_0577 AFE_0577 AFE_0577 515873 516952 + membrane protein%2C putative identified by match to protein family HMM PF03706%3B match to protein family HMM TIGR00374 gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0577 AFE_0578 AFE_0578 AFE_0578 516964 517041 + tRNA-Thr tRNA gene576 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0578 AFE_0579 AFE_0579 AFE_0579 517171 517464 + hypothetical protein identified by glimmer%3B putative gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0579 AFE_0580 AFE_0580 AFE_0580 517499 517630 + hypothetical protein identified by glimmer%3B putative gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0580 AFE_0581 AFE_0581 AFE_0581 517630 517812 + hypothetical protein identified by glimmer%3B putative gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0581 AFE_0582 AFE_0582 AFE_0582 517863 518060 - conserved hypothetical protein identified by similarity to GB:AAL62784.1 gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0582 AFE_0583 AFE_0583 AFE_0583 518054 518284 - hypothetical protein identified by glimmer%3B putative gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0583 AFE_0584 AFE_0584 AFE_0584 518289 519145 - site-specific recombinase%2C phage integrase family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P10487 pseudogene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0584 AFE_0585 AFE_0585 AFE_0585 519125 519379 + hypothetical protein identified by glimmer%3B putative gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0585 AFE_0586 AFE_0586 AFE_0586 519394 519469 - tRNA-Arg tRNA gene584 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0586 AFE_0587 AFE_0587 AFE_0587 519523 520530 - sodium/calcium exchanger identified by match to protein family HMM PF01699 gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0587 AFE_0588 AFE_0588 AFE_0588 520643 521266 + hypothetical protein identified by glimmer%3B putative gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0588 AFE_0589 AFE_0589 AFE_0589 521368 523221 + ATP-dependent RNA helicase%2C DEAD/DEAH box family identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880 gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0589 AFE_0590 AFE_0590 AFE_0590 523319 523522 - cold-shock protein identified by similarity to GB:AAD10037.1%3B match to protein family HMM PF00313 gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0590 AFE_0591 AFE_0591 priA priA 523626 525788 - primosomal protein N` identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM TIGR00595 gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0591 AFE_0592 AFE_0592 ubiA ubiA 526056 526958 - 4-hydroxybenzoate polyprenyl transferase identified by similarity to SP:P26601%3B match to protein family HMM PF01040%3B match to protein family HMM TIGR01474 gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0592 AFE_0593 AFE_0593 AFE_0593 526958 527470 - chorismate lyase family protein identified by match to protein family HMM PF04345 gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0593 AFE_0594 AFE_0594 AFE_0594 527561 528163 - phosphatidylethanolamine N-methyltransferase%2C putative identified by similarity to GB:CAB91878.1 gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0594 AFE_0595 AFE_0595 AFE_0595 528323 528706 + lipoprotein%2C putative gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0595 AFE_0596 AFE_0596 miaB miaB 528790 530145 + tRNA-i(6)A37 modification enzyme MiaB identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01574 gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0596 AFE_0597 AFE_0597 AFE_0597 530111 531133 + PhoH-like protein identified by similarity to SP:P77349%3B match to protein family HMM PF02562 gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0597 AFE_0598 AFE_0598 AFE_0598 531151 531627 + conserved hypothetical protein TIGR00043 identified by match to protein family HMM PF02130%3B match to protein family HMM TIGR00043 gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0598 AFE_0599 AFE_0599 AFE_0599 531620 532495 + magnesium and cobalt efflux protein%2C putative identified by similarity to SP:Q9R874%3B match to protein family HMM PF00571%3B match to protein family HMM PF03471 gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0599 AFE_0600 AFE_0600 pmbA pmbA 533981 535327 - pmbA protein identified by similarity to SP:P24231%3B match to protein family HMM PF01523 gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0600 AFE_0601 AFE_0601 cutE cutE 532507 534012 + apolipoprotein N-acyltransferase identified by similarity to SP:P23930%3B match to protein family HMM PF00795%3B match to protein family HMM TIGR00546 gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0601 AFE_0602 AFE_0602 AFE_0602 535621 536505 + cation ABC transporter%2C periplasmic cation-binding protein%2C putative identified by match to protein family HMM PF01297 gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0602 AFE_0603 AFE_0603 AFE_0603 536519 537343 + cation ABC transporter%2C ATP-binding protein%2C putative identified by match to protein family HMM PF00005 gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0603 AFE_0604 AFE_0604 AFE_0604 537363 538253 + cation ABC transporter%2C permease protein%2C putative identified by match to protein family HMM PF00950 gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0604 AFE_0605 AFE_0605 AFE_0605 538257 539066 + cation ABC transporter%2C permease protein%2C putative identified by match to protein family HMM PF00950 gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0605 AFE_0606 AFE_0606 AFE_0606 539103 540368 - hypothetical protein identified by glimmer%3B putative gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0606 AFE_0607 AFE_0607 AFE_0607 540304 541134 - conserved hypothetical protein identified by similarity to GB:AAN66818.1 gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0607 AFE_0608 AFE_0608 AFE_0608 541242 541418 - hypothetical protein identified by glimmer%3B putative gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0608 AFE_0609 AFE_0609 AFE_0609 541415 542428 - NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0609 AFE_0610 AFE_0610 AFE_0610 542425 542676 - hypothetical protein identified by glimmer%3B putative gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0610 AFE_0611 AFE_0611 AFE_0611 542742 544058 - hypothetical protein identified by glimmer%3B putative gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0611 AFE_0612 AFE_0612 AFE_0612 543982 544824 - conserved hypothetical protein identified by similarity to GB:AAN66818.1 gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0612 AFE_0613 AFE_0613 AFE_0613 545408 545614 - hypothetical protein identified by glimmer%3B putative gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0613 AFE_0614 AFE_0614 AFE_0614 545720 546949 + conserved hypothetical protein identified by similarity to PIR:AD2455 gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0614 AFE_0615 AFE_0615 AFE_0615 546946 548208 + glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0615 AFE_0616 AFE_0616 AFE_0616 548205 549449 + glycosyltransferase%2C group 1 identified by match to protein family HMM PF00534 gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0616 AFE_0617 AFE_0617 AFE_0617 549449 551278 + ABC transporter%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0617 AFE_0618 AFE_0618 AFE_0618 551275 552579 + UDP-glucose/GDP-mannose dehydrogenase family protein identified by match to protein family HMM PF00070%3B match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0618 AFE_0619 AFE_0619 AFE_0619 552620 553462 + hypothetical protein identified by glimmer%3B putative gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0619 AFE_0620 AFE_0620 AFE_0620 554119 554904 - hypothetical protein identified by glimmer%3B putative gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0620 AFE_0621 AFE_0621 AFE_0621 553474 554142 + phosphoglycerate mutase family protein identified by match to protein family HMM PF00300%3B match to protein family HMM TIGR03162 gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0621 AFE_0622 AFE_0622 AFE_0622 555070 555882 - conserved hypothetical protein identified by similarity to GB:BAC65281.1 gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0622 AFE_0623 AFE_0623 AFE_0623 556014 556778 + methyltransferase%2C UbiE/COQ5 family identified by match to protein family HMM PF01209%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0623 AFE_0624 AFE_0624 leuC leuC 556828 558240 + 3-isopropylmalate dehydratase%2C large subunit identified by match to protein family HMM PF00330%3B match to protein family HMM TIGR00170 gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0624 AFE_0625 AFE_0625 AFE_0625 558209 558388 + hypothetical protein identified by glimmer%3B putative gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0625 AFE_0626 AFE_0626 leuD leuD 558388 559011 + 3-isopropylmalate dehydratase%2C small subunit identified by similarity to SP:P30126%3B match to protein family HMM PF00694%3B match to protein family HMM TIGR00171 gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0626 AFE_0627 AFE_0627 AFE_0627 559032 559346 + hypothetical protein identified by glimmer%3B putative gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0627 AFE_0628 AFE_0628 pdxH pdxH 559363 560019 - pyridoxamine 5'-phosphate oxidase identified by similarity to SP:P28225%3B match to protein family HMM PF01243%3B match to protein family HMM TIGR00558 gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0628 AFE_0629 AFE_0629 rpiA rpiA 560051 560710 - ribose 5-phosphate isomerase A identified by match to protein family HMM PF06026%3B match to protein family HMM TIGR00021 gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0629 AFE_0630 AFE_0630 AFE_0630 560700 561452 - DJ-1/PfpI family protein identified by match to protein family HMM PF01965 gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0630 AFE_0631 AFE_0631 cyoA cyoA 562218 563183 + cytochrome o ubiquinol oxidase%2C subunit II identified by similarity to SP:P18400%3B match to protein family HMM PF00116%3B match to protein family HMM PF06481 gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0631 AFE_0632 AFE_0632 cyoB cyoB 563236 565353 + cytochrome o ubiquinol oxidase%2C subunit I identified by similarity to SP:P18401%3B match to protein family HMM PF00115 gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0632 AFE_0633 AFE_0633 cyoC cyoC 565420 566055 + cytochrome o ubiquinol oxidase%2C subunit III identified by similarity to SP:P18402 gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0633 AFE_0634 AFE_0634 cyoD cyoD 566052 566408 + cytochrome o ubiquinol oxidase%2C subunit IV identified by similarity to SP:P18403 gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0634 AFE_0635 AFE_0635 cyoE-1 cyoE-1 566437 567381 + protoheme IX farnesyltransferase identified by similarity to SP:P56938%3B match to protein family HMM PF01040%3B match to protein family HMM TIGR01473 gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0635 AFE_0636 AFE_0636 AFE_0636 568597 569430 - undecaprenol kinase%2C putative identified by match to protein family HMM PF02673 gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0636 AFE_0637 AFE_0637 AFE_0637 567401 568603 + major facilitator family transporter identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0637 AFE_0638 AFE_0638 greA greA 569442 569918 - transcription elongation factor GreA identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462 gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0638 AFE_0639 AFE_0639 carB carB 569915 573154 - carbamoyl-phosphate synthase%2C large subunit identified by similarity to SP:P00968%3B match to protein family HMM PF00289%3B match to protein family HMM PF02142%3B match to protein family HMM PF02222%3B match to protein family HMM PF02655%3B match to protein family HMM PF02786%3B match to protein family HMM PF02787%3B match to protein family HMM TIGR01369 gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0639 AFE_0640 AFE_0640 carA carA 573147 574289 - carbamoyl-phosphate synthase%2C small subunit identified by similarity to SP:P00907%3B match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368 gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0640 AFE_0641 AFE_0641 AFE_0641 574524 575210 + hypothetical protein identified by glimmer%3B putative gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0641 AFE_0642 AFE_0642 thiS thiS 575314 575514 + thiamine biosynthesis protein ThiS identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01683 gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0642 AFE_0643 AFE_0643 thiG thiG 575559 576341 + thiamin biosynthesis protein ThiG identified by match to protein family HMM PF05690 gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0643 AFE_0644 AFE_0644 AFE_0644 576322 576912 + hypothetical protein identified by glimmer%3B putative gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0644 AFE_0645 AFE_0645 mpl mpl 576924 578291 + UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase identified by similarity to SP:P37773%3B match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01081 gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0645 AFE_0646 AFE_0646 AFE_0646 578873 579724 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0646 AFE_0647 AFE_0647 AFE_0647 578323 578940 + 3-octaprenyl-4-hydroxybenzoate carboxy-lyase%2C putative identified by match to protein family HMM PF02441%3B match to protein family HMM TIGR00421 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0647 AFE_0648 AFE_0648 AFE_0648 579724 580860 - ABC transporter%2C permease protein%2C putative identified by similarity to GB:AAN65776.1%3B match to protein family HMM PF02405%3B match to protein family HMM TIGR00056 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0648 AFE_0649 AFE_0649 AFE_0649 581353 582105 - endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0649 AFE_0650 AFE_0650 AFE_0650 580905 581408 + conserved hypothetical protein identified by similarity to PIR:H83630 gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0650 AFE_0651 AFE_0651 AFE_0651 582122 582472 - hypothetical protein identified by glimmer%3B putative gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0651 AFE_0652 AFE_0652 moeB moeB 582469 583224 - molybdopterin biosynthesis MoeB protein identified by similarity to SP:P12282%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237 gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0652 AFE_0653 AFE_0653 AFE_0653 583361 584587 - conserved hypothetical protein identified by similarity to GB:CAD85317.1 gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0653 AFE_0654 AFE_0654 AFE_0654 584496 587003 - ABC transporter%2C permease protein identified by match to protein family HMM PF02687 gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0654 AFE_0655 AFE_0655 AFE_0655 587000 587674 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0655 AFE_0656 AFE_0656 AFE_0656 587814 587908 + tRNA-Ser tRNA gene654 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0656 AFE_0657 AFE_0657 trx trx 588124 588450 + thioredoxin identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0657 AFE_0658 AFE_0658 rho rho 588567 589823 + transcription termination factor Rho identified by match to protein family HMM PF00006%3B match to protein family HMM PF07497%3B match to protein family HMM PF07498%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00767 gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0658 AFE_0659 AFE_0659 rpmE rpmE 589898 590104 + ribosomal protein L31 identified by similarity to SP:P02432%3B match to protein family HMM PF01197%3B match to protein family HMM TIGR00105 gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0659 AFE_0660 AFE_0660 AFE_0660 590111 591349 + malic enzyme family protein identified by similarity to SP:O30808%3B match to protein family HMM PF00390%3B match to protein family HMM PF03949 gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0660 AFE_0661 AFE_0661 AFE_0661 591356 592411 + membrane protein%2C putative identified by similarity to GB:AAN69743.1%3B match to protein family HMM PF01594 gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0661 AFE_0662 AFE_0662 ilvD-2 ilvD-2 592517 594358 + dihydroxy-acid dehydratase identified by similarity to SP:P51785%3B match to protein family HMM PF00920%3B match to protein family HMM TIGR00110 gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0662 AFE_0663 AFE_0663 AFE_0663 594365 595321 + conserved hypothetical protein identified by similarity to GB:BAC50332.1%3B match to protein family HMM PF01936 gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0663 AFE_0664 AFE_0664 argA argA 595336 596643 - N-acetylglutamate synthase identified by similarity to SP:P08205%3B match to protein family HMM PF00583%3B match to protein family HMM PF00696%3B match to protein family HMM TIGR01890 gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0664 AFE_0665 AFE_0665 AFE_0665 596659 596970 - BolA family protein identified by match to protein family HMM PF01722 gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0665 AFE_0666 AFE_0666 AFE_0666 596967 597296 - YCII-related domain protein identified by match to protein family HMM PF03795 gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0666 AFE_0667 AFE_0667 ispZ ispZ 597352 597909 - intracellular septation protein A identified by similarity to SP:P95745%3B match to protein family HMM PF04279%3B match to protein family HMM TIGR00997 gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0667 AFE_0668 AFE_0668 AFE_0668 597972 598835 + conserved hypothetical protein identified by similarity to GB:CAD86126.1%3B match to protein family HMM PF05673 gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0668 AFE_0669 AFE_0669 AFE_0669 598920 599723 - inositol monophosphate family protein identified by match to protein family HMM PF00459 gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0669 AFE_0670 AFE_0670 AFE_0670 599805 600575 + RNA methyltransferase%2C TrmH family%2C group 1 identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00050 gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0670 AFE_0671 AFE_0671 cysE-2 cysE-2 600620 601369 + serine O-acetyltransferase identified by similarity to SP:Q06750%3B match to protein family HMM PF00132%3B match to protein family HMM TIGR01172 gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0671 AFE_0672 AFE_0672 iscR iscR 601415 601903 + iron-sulfur cluster assembly transcription factor IscR identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0672 AFE_0673 AFE_0673 iscS-3 iscS-3 601965 603188 + cysteine desulfurase IscS identified by similarity to SP:P39171%3B match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR02006 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0673 AFE_0674 AFE_0674 iscU iscU 603213 603644 + FeS cluster assembly scaffold protein IscU identified by match to protein family HMM PF01592%3B match to protein family HMM TIGR01999 gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0674 AFE_0675 AFE_0675 iscA iscA 603654 603977 + iron-sulfur cluster assembly protein IscA identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049%3B match to protein family HMM TIGR02011 gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0675 AFE_0676 AFE_0676 hscB hscB 604049 604594 + co-chaperone Hsc20 identified by similarity to SP:P36540%3B match to protein family HMM PF00226%3B match to protein family HMM PF07743%3B match to protein family HMM TIGR00714 gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0676 AFE_0677 AFE_0677 hscA hscA 604628 606493 + Fe-S protein assembly chaperone HscA identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR01991 gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0677 AFE_0678 AFE_0678 fdx fdx 606494 606832 + ferredoxin%2C 2Fe-2S identified by similarity to SP:P25528%3B match to protein family HMM PF00111%3B match to protein family HMM TIGR02007 gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0678 AFE_0679 AFE_0679 AFE_0679 606832 607026 + conserved hypothetical protein identified by similarity to SP:Q51384%3B match to protein family HMM PF04384%3B match to protein family HMM TIGR03412 gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0679 AFE_0680 AFE_0680 trmU trmU 607040 608098 + tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase identified by match to protein family HMM PF03054%3B match to protein family HMM PF06508%3B match to protein family HMM TIGR00420 gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0680 AFE_0681 AFE_0681 AFE_0681 608117 609016 - patatin-like phospholipase family protein identified by match to protein family HMM PF01734 gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0681 AFE_0682 AFE_0682 AFE_0682 609219 609326 + hypothetical protein identified by glimmer%3B putative gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0682 AFE_0683 AFE_0683 AFE_0683 609339 611693 + type I restriction-modification system%2C R subunit identified by similarity to SP:Q47281%3B match to protein family HMM PF00271%3B match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM PF08463 gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0683 AFE_0684 AFE_0684 AFE_0684 611690 613159 + type I restriction-modification system%2C M subunit identified by similarity to SP:Q47282%3B match to protein family HMM PF02384 gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0684 AFE_0685 AFE_0685 AFE_0685 613165 614139 + death-on-curing family protein identified by match to protein family HMM PF05012%3B match to protein family HMM TIGR01550 gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0685 AFE_0686 AFE_0686 AFE_0686 614145 615830 + type I restriction-modification system%2C S subunit%2C putative identified by similarity to SP:P19704%3B match to protein family HMM PF01420 gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0686 AFE_0687 AFE_0687 AFE_0687 616123 617682 + hypothetical protein identified by glimmer%3B putative gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0687 AFE_0688 AFE_0688 AFE_0688 617998 618180 - hypothetical protein identified by glimmer%3B putative gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0688 AFE_0689 AFE_0689 AFE_0689 618147 618707 + transposase%2C degenerate gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0689 AFE_0690 AFE_0690 fdhD-2 fdhD-2 618716 619573 - formate dehydrogenase family accessory protein FdhD identified by match to protein family HMM PF02634%3B match to protein family HMM TIGR00129 gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0690 AFE_0691 AFE_0691 AFE_0691 619543 619782 - conserved hypothetical protein identified by similarity to GB:AAM37336.1 gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0691 AFE_0692 AFE_0692 AFE_0692 619832 622108 - oxidoreductase alpha (molybdopterin) subunit identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM TIGR01701 gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0692 AFE_0693 AFE_0693 AFE_0693 622336 624267 + sigma-54 dependent transcriptional regulator identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728 gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0693 AFE_0694 AFE_0694 AFE_0694 624443 624556 - hypothetical protein identified by glimmer%3B putative gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0694 AFE_0695 AFE_0695 AFE_0695 624279 624497 + hypothetical protein identified by glimmer%3B putative gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0695 AFE_0696 AFE_0696 gfa gfa 624681 625265 + S-(hydroxymethyl)glutathione synthase identified by similarity to GB:AAM35624.1%3B match to protein family HMM PF04828%3B match to protein family HMM TIGR02820 gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0696 AFE_0697 AFE_0697 AFE_0697 625364 626473 + S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase identified by similarity to SP:P72324%3B match to protein family HMM PF00107%3B match to protein family HMM PF08240%3B match to protein family HMM TIGR02818 gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0697 AFE_0698 AFE_0698 fghA fghA 626473 627327 + S-formylglutathione hydrolase identified by match to protein family HMM PF00756%3B match to protein family HMM TIGR02821 gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0698 AFE_0699 AFE_0699 cysB cysB 627352 628314 - sulfur assimilation transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0699 AFE_0700 AFE_0700 hupR hupR 628370 629818 - hydrogenase sigma-54 dependent DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0700 AFE_0701 AFE_0701 hybA hybA 630000 630962 + hydrogenase-2%2C small subunit identified by match to protein family HMM PF01058 gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0701 AFE_0702 AFE_0702 hybC hybC 631013 632611 + hydrogenase-2%2C large subunit identified by match to protein family HMM PF00374 gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0702 AFE_0703 AFE_0703 AFE_0703 632701 633021 + conserved hypothetical protein identified by similarity to SP:P00264 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0703 AFE_0704 AFE_0704 AFE_0704 633040 633372 + hypothetical protein identified by glimmer%3B putative gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0704 AFE_0705 AFE_0705 AFE_0705 633375 633848 + hydrogenase maturation protease identified by match to protein family HMM TIGR00072 gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0705 AFE_0706 AFE_0706 AFE_0706 633845 634174 + hypothetical protein identified by glimmer%3B putative gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0706 AFE_0707 AFE_0707 AFE_0707 634273 635253 + conserved hypothetical protein identified by similarity to PIR:AI1892 gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0707 AFE_0708 AFE_0708 AFE_0708 635278 635505 + hypothetical protein identified by glimmer%3B putative gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0708 AFE_0709 AFE_0709 AFE_0709 635534 635758 + membrane protein%2C putative gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0709 AFE_0710 AFE_0710 AFE_0710 635775 636665 + iron-sulfur cluster-binding protein%2C Rieske family identified by match to protein family HMM PF00355%3B match to protein family HMM PF01106 gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0710 AFE_0711 AFE_0711 AFE_0711 636658 637854 + NHL repeat protein identified by match to protein family HMM PF01436 gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0711 AFE_0712 AFE_0712 hypF hypF 637851 640262 + [NiFe] hydrogenase maturation protein HypF identified by similarity to SP:P30131%3B match to protein family HMM PF00708%3B match to protein family HMM PF01300%3B match to protein family HMM PF07503%3B match to protein family HMM TIGR00143 gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0712 AFE_0713 AFE_0713 hypC-1 hypC-1 640253 640546 + hydrogenase assembly chaperone HypC identified by similarity to SP:P24191%3B match to protein family HMM PF01455%3B match to protein family HMM TIGR00074 gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0713 AFE_0714 AFE_0714 gmhA gmhA 640565 641260 + phosphoheptose isomerase identified by similarity to SP:Q9AGY7%3B match to protein family HMM TIGR00441 gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0714 AFE_0715 AFE_0715 hypD-1 hypD-1 641244 642389 + hydrogenase expression/formation protein HypD identified by similarity to SP:P24192%3B match to protein family HMM PF01924%3B match to protein family HMM TIGR00075 gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0715 AFE_0716 AFE_0716 hypE hypE 642389 643447 + hydrogenase expression/formation protein HypE identified by similarity to SP:P40595%3B match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR02124 gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0716 AFE_0717 AFE_0717 hypA-1 hypA-1 643461 643790 + hydrogenase nickel insertion protein HypA identified by similarity to SP:P24189%3B match to protein family HMM PF01155 gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0717 AFE_0718 AFE_0718 hypB-1 hypB-1 643935 644708 + hydrogenase accessory protein HypB identified by similarity to SP:P24190%3B match to protein family HMM PF02492%3B match to protein family HMM TIGR00073 gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0718 AFE_0719 AFE_0719 AFE_0719 644734 646143 + amino acid permease family protein identified by match to protein family HMM PF00324 gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0719 AFE_0720 AFE_0720 AFE_0720 646208 647458 + FAD-dependent oxidoreductase identified by match to protein family HMM PF01266 gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0720 AFE_0721 AFE_0721 AFE_0721 647543 647941 + conserved hypothetical protein identified by similarity to PIR:A97389 gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0721 AFE_0722 AFE_0722 ilvA ilvA 647956 649476 - threonine ammonia-lyase%2C biosynthetic identified by similarity to SP:P04968%3B match to protein family HMM PF00291%3B match to protein family HMM PF00585%3B match to protein family HMM TIGR01124 gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0722 AFE_0723 AFE_0723 AFE_0723 649473 649844 - helix-turn-helix domain protein identified by match to protein family HMM PF00126 gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0723 AFE_0724 AFE_0724 AFE_0724 649841 650806 - hydrolase%2C alpha/beta hydrolase fold family identified by match to protein family HMM PF00561 gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0724 AFE_0725 AFE_0725 AFE_0725 650803 651012 - conserved hypothetical protein gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0725 AFE_0726 AFE_0726 AFE_0726 651358 652134 + conserved hypothetical protein identified by similarity to GB:AAQ58336.1 gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0726 AFE_0727 AFE_0727 AFE_0727 652134 653033 + 1-acyl-sn-glycerol-3-phosphate acyltransferase identified by similarity to SP:Q59601%3B match to protein family HMM PF01553%3B match to protein family HMM TIGR00530 gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0727 AFE_0728 AFE_0728 hemE hemE 653053 654117 - uroporphyrinogen decarboxylase identified by similarity to SP:P29680%3B match to protein family HMM PF01208%3B match to protein family HMM TIGR01464 gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0728 AFE_0729 AFE_0729 gltD gltD 654121 655518 - glutamate synthase%2C small subunit identified by similarity to SP:P09832%3B match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01318 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0729 AFE_0730 AFE_0730 gltB gltB 655542 659969 - glutamate synthase%2C large subunit identified by similarity to SP:P09831%3B match to protein family HMM PF00310%3B match to protein family HMM PF01493%3B match to protein family HMM PF01645%3B match to protein family HMM PF04898 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0730 AFE_0731 AFE_0731 AFE_0731 660107 661306 - deoxyguanosinetriphosphate triphosphohydrolase%2C putative identified by similarity to SP:Q8XV63%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR01353 gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0731 AFE_0732 AFE_0732 thyX thyX 661272 662072 - thymidylate synthase%2C flavin-dependent identified by match to protein family HMM PF02511%3B match to protein family HMM TIGR02170 gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0732 AFE_0733 AFE_0733 aroB aroB 662107 663201 - 3-dehydroquinate synthase identified by similarity to SP:P07639%3B match to protein family HMM PF01761%3B match to protein family HMM TIGR01357 gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0733 AFE_0734 AFE_0734 aroK aroK 663307 663846 - shikimate kinase identified by similarity to SP:P24167%3B match to protein family HMM PF01202 gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0734 AFE_0735 AFE_0735 AFE_0735 663843 666197 - fimbrial assembly protein PilQ%2C putative identified by similarity to SP:P34750%3B match to protein family HMM PF00263%3B match to protein family HMM PF03958%3B match to protein family HMM PF07660%3B match to protein family HMM TIGR02515 gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0735 AFE_0736 AFE_0736 AFE_0736 666242 666790 - type 4 fimbrial biogenesis protein PilP%2C putative identified by similarity to GB:AAA93089.1 gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0736 AFE_0737 AFE_0737 AFE_0737 666787 667440 - fimbrial assembly protein PilO%2C putative identified by match to protein family HMM PF04350 gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0737 AFE_0738 AFE_0738 AFE_0738 667437 668030 - type IV pilus biogenesis protein PilN identified by match to protein family HMM PF05137 gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0738 AFE_0739 AFE_0739 AFE_0739 668027 669091 - type IV pilus assembly protein PilM identified by similarity to PIR:S77726%3B match to protein family HMM TIGR01175 gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0739 AFE_0740 AFE_0740 AFE_0740 669137 669307 + hypothetical protein identified by glimmer%3B putative gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0740 AFE_0741 AFE_0741 AFE_0741 669319 669852 + cytidine and deoxycytidylate deaminase family protein identified by match to protein family HMM PF00383 gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0741 AFE_0742 AFE_0742 AFE_0742 669849 670280 + conserved hypothetical protein TIGR00149 identified by match to protein family HMM PF01894%3B match to protein family HMM TIGR00149 gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0742 AFE_0743 AFE_0743 AFE_0743 670280 670705 + conserved domain protein gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0743 AFE_0744 AFE_0744 AFE_0744 670768 672306 + MutS domain V protein identified by match to protein family HMM PF00488 gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0744 AFE_0745 AFE_0745 ilvB ilvB 672435 674180 + acetolactate synthase%2C large subunit%2C biosynthetic type identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118 gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0745 AFE_0746 AFE_0746 ilvN ilvN 674183 674668 + acetolactate synthase%2C small subunit identified by similarity to SP:P00894%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00119 gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0746 AFE_0747 AFE_0747 ilvC ilvC 674720 675736 + ketol-acid reductoisomerase identified by match to protein family HMM PF01450%3B match to protein family HMM PF02629%3B match to protein family HMM PF07991%3B match to protein family HMM TIGR00465 gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0747 AFE_0748 AFE_0748 psd psd 675855 676517 + phosphatidylserine decarboxylase identified by match to protein family HMM PF02666%3B match to protein family HMM TIGR00164 gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0748 AFE_0749 AFE_0749 AFE_0749 677242 679095 - pyruvate kinase barrel domain protein identified by match to protein family HMM PF00224 gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0749 AFE_0750 AFE_0750 pssA pssA 676514 677266 + CDP-diacylglycerol--serine O-phosphatidyltransferse identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00473 gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0750 AFE_0751 AFE_0751 AFE_0751 679283 679708 + universal stress family protein identified by match to protein family HMM PF00582 gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0751 AFE_0752 AFE_0752 AFE_0752 679797 680222 - GTP cyclohydrolase I family protein identified by match to protein family HMM PF01227%3B match to protein family HMM TIGR03139 gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0752 AFE_0753 AFE_0753 smc smc 680283 683735 + chromosome segregation protein SMC identified by similarity to GB:CAD66591.1%3B match to protein family HMM PF02463%3B match to protein family HMM TIGR02168 gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0753 AFE_0754 AFE_0754 AFE_0754 683810 683962 + hypothetical protein identified by glimmer%3B putative gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0754 AFE_0755 AFE_0755 AFE_0755 683995 684963 + hypothetical protein identified by glimmer%3B putative gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0755 AFE_0756 AFE_0756 AFE_0756 684969 685661 - HAD-superfamily subfamily IB hydrolase%2C TIGR01490 identified by similarity to GB:AAN70712.1%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01488%3B match to protein family HMM TIGR01490 gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0756 AFE_0757 AFE_0757 ligA ligA 685778 687793 + DNA ligase%2C NAD-dependent identified by similarity to SP:P15042%3B match to protein family HMM PF00533%3B match to protein family HMM PF00633%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575 gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0757 AFE_0758 AFE_0758 AFE_0758 687796 688311 + ATP synthase F1%2C epsilon subunit%2C putative identified by match to protein family HMM PF00401%3B match to protein family HMM PF02823%3B match to protein family HMM TIGR01216 gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0758 AFE_0759 AFE_0759 AFE_0759 688328 688978 + methyltransferase%2C putative identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0759 AFE_0760 AFE_0760 AFE_0760 689122 689856 - conserved hypothetical protein identified by similarity to PIR:A64695%3B match to protein family HMM PF01863 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0760 AFE_0761 AFE_0761 AFE_0761 690101 691051 - transcriptional regulator%2C LysR family identified by similarity to GB:AAK50330.1%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0761 AFE_0762 AFE_0762 AFE_0762 689944 690111 + hypothetical protein identified by glimmer%3B putative gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0762 AFE_0763 AFE_0763 AFE_0763 691285 693621 + TonB-dependent receptor%2C putative identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0763 AFE_0764 AFE_0764 AFE_0764 693860 694654 + membrane protein%2C putative identified by similarity to GB:AAQ58180.1%3B match to protein family HMM PF01925 gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0764 AFE_0765 AFE_0765 AFE_0765 694773 694886 + hypothetical protein identified by glimmer%3B putative gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0765 AFE_0766 AFE_0766 AFE_0766 695116 695229 + hypothetical protein identified by glimmer%3B putative gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0766 AFE_0767 AFE_0767 AFE_0767 695199 695345 + hypothetical protein identified by glimmer%3B putative gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0767 AFE_0768 AFE_0768 AFE_0768 695389 696093 + MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618 gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0768 AFE_0769 AFE_0769 AFE_0769 696141 696539 + biopolymer transport protein%2C ExbD/TolR family identified by match to protein family HMM PF02472 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0769 AFE_0770 AFE_0770 AFE_0770 696716 697387 + TonB family protein identified by match to protein family HMM TIGR01352 gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0770 AFE_0771 AFE_0771 AFE_0771 697445 698869 + cytosine/purines/uracil/thiamine/allantoin permease family protein identified by match to protein family HMM PF02133 gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0771 AFE_0772 AFE_0772 AFE_0772 698866 700095 + guanine deaminase%2C putative identified by similarity to SP:P76641%3B match to protein family HMM PF01979 gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0772 AFE_0773 AFE_0773 add add 700142 701185 + adenosine deaminase identified by similarity to SP:P22333%3B match to protein family HMM PF00962%3B match to protein family HMM TIGR01430 gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0773 AFE_0774 AFE_0774 AFE_0774 701209 702210 + phosphorylase%2C putative gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0774 AFE_0775 AFE_0775 AFE_0775 702272 704530 + xanthine dehydrogenase%2C molybdenum-binding subunit%2C putative identified by similarity to SP:Q46799%3B match to protein family HMM PF01315%3B match to protein family HMM PF02738 gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0775 AFE_0776 AFE_0776 AFE_0776 704533 704982 + xanthine dehydrogenase%2C iron-sulfur binding subunit%2C putative identified by similarity to SP:P77165%3B match to protein family HMM PF00111%3B match to protein family HMM PF01799 gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0776 AFE_0777 AFE_0777 AFE_0777 704982 705848 + xanthine dehydrogenase%2C FAD-binding protein%2C putative identified by similarity to SP:Q8X6C5%3B match to protein family HMM PF00941 gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0777 AFE_0778 AFE_0778 AFE_0778 705852 706436 + conserved domain protein gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0778 AFE_0779 AFE_0779 AFE_0779 706455 707546 + cyanuric acid amidohydrolase identified by similarity to SP:O87589%3B match to protein family HMM TIGR02714 gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0779 AFE_0780 AFE_0780 AFE_0780 707543 708484 + xanthine dehydrogenase accessory factor%2C putative identified by similarity to GB:CAB41849.1%3B match to protein family HMM PF02625 gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0780 AFE_0781 AFE_0781 AFE_0781 708501 708701 + conserved hypothetical protein gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0781 AFE_0782 AFE_0782 AFE_0782 708698 710095 + amidohydrolase%2C AtzE family identified by match to protein family HMM PF01425%3B match to protein family HMM TIGR02715 gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0782 AFE_0783 AFE_0783 AFE_0783 710055 710495 + conserved hypothetical protein identified by similarity to PIR:AD0396 gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0783 AFE_0784 AFE_0784 AFE_0784 710504 711112 + hypothetical protein identified by glimmer%3B putative gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0784 AFE_0785 AFE_0785 ggt ggt 711109 712728 + gamma-glutamyltranspeptidase identified by match to protein family HMM PF01019%3B match to protein family HMM TIGR00066 gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0785 AFE_0786 AFE_0786 AFE_0786 713160 713681 - heme-utilization protein HutZ%2C putative identified by similarity to GB:AAG23392.1%3B match to protein family HMM PF01243 gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0786 AFE_0787 AFE_0787 AFE_0787 713734 714783 + polysaccharide deacetylase family protein identified by match to protein family HMM PF01522 gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0787 AFE_0788 AFE_0788 AFE_0788 714875 716194 + non-heme halogenase%2C putative identified by similarity to GB:AAK81830.1%3B match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM PF04820 gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0788 AFE_0789 AFE_0789 AFE_0789 716197 717270 + dioxygenase%2C putative identified by similarity to PIR:T30234%3B match to protein family HMM PF01042 gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0789 AFE_0790 AFE_0790 AFE_0790 717267 718070 + acyltransferase%2C putative identified by match to protein family HMM PF01553 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0790 AFE_0791 AFE_0791 AFE_0791 718810 720156 - Na+/H+ antiporter%2C putative identified by match to protein family HMM PF00999 gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0791 AFE_0792 AFE_0792 AFE_0792 718067 718828 + glycosyl transferase%2C group 2 identified by match to protein family HMM PF00535 gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0792 AFE_0793 AFE_0793 AFE_0793 720172 720894 - 3-oxoacyl-(acyl-carrier-protein) reductase%2C putative identified by similarity to SP:P70720%3B match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF08659 gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0793 AFE_0794 AFE_0794 AFE_0794 720887 721387 - conserved hypothetical protein identified by similarity to GB:CAD13953.1 gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0794 AFE_0795 AFE_0795 AFE_0795 721378 722193 - conserved hypothetical protein identified by similarity to GB:AAM43220.1 gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0795 AFE_0796 AFE_0796 AFE_0796 722206 723399 - 3-oxoacyl-(acyl-carrier-protein) synthase%2C putative identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801 gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0796 AFE_0797 AFE_0797 AFE_0797 723703 723969 + acyl carrier protein%2C putative identified by similarity to SP:O67611 gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0797 AFE_0798 AFE_0798 AFE_0798 724043 726397 - membrane protein%2C putative gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0798 AFE_0799 AFE_0799 AFE_0799 726394 726954 - conserved hypothetical protein identified by similarity to GB:CAD13958.1 gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0799 AFE_0800 AFE_0800 AFE_0800 727128 727976 - conserved hypothetical protein identified by similarity to GB:CAD13959.1 gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0800 AFE_0801 AFE_0801 AFE_0801 728048 728278 - conserved hypothetical protein identified by similarity to GB:CAD13960.1 gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0801 AFE_0802 AFE_0802 AFE_0802 728355 729716 - AMP-binding protein identified by match to protein family HMM PF00501 gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0802 AFE_0803 AFE_0803 AFE_0803 729744 730439 - membrane protein%2C putative identified by similarity to GB:CAD13961.1 gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0803 AFE_0804 AFE_0804 AFE_0804 730635 730967 - conserved hypothetical protein gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0804 AFE_0805 AFE_0805 AFE_0805 731093 732637 - auxin-responsive GH3-related protein identified by match to protein family HMM PF03321 gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0805 AFE_0806 AFE_0806 AFE_0806 732634 735042 - penicillin amidase family protein identified by match to protein family HMM PF01804 gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0806 AFE_0807 AFE_0807 AFE_0807 735031 735168 + hypothetical protein identified by glimmer%3B putative gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0807 AFE_0808 AFE_0808 AFE_0808 735209 736258 - oxidoreductase%2C FAD-binding subunit identified by similarity to SP:P77324%3B match to protein family HMM PF00941%3B match to protein family HMM PF03450 gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0808 AFE_0809 AFE_0809 AFE_0809 736258 738606 - oxidoreductase%2C molybdopterin binding subunit identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738 gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0809 AFE_0810 AFE_0810 AFE_0810 738609 739136 - oxidoreductase%2C iron-sulfur subunit identified by similarity to SP:P19921%3B match to protein family HMM PF00111%3B match to protein family HMM PF01799 gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0810 AFE_0811 AFE_0811 AFE_0811 739221 739349 + hypothetical protein identified by glimmer%3B putative gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0811 AFE_0812 AFE_0812 AFE_0812 739384 739593 - hypothetical protein identified by glimmer%3B putative gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0812 AFE_0813 AFE_0813 AFE_0813 739817 741214 - major facilitator family transporter identified by match to protein family HMM PF07690 gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0813 AFE_0814 AFE_0814 AFE_0814 741520 742905 - voltage-gated chloride channel identified by match to protein family HMM PF00654 gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0814 AFE_0815 AFE_0815 AFE_0815 742919 744691 - voltage-gated chloride channel identified by match to protein family HMM PF00571%3B match to protein family HMM PF00654 gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0815 AFE_0816 AFE_0816 AFE_0816 745736 745876 - hypothetical protein identified by glimmer%3B putative gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0816 AFE_0817 AFE_0817 AFE_0817 744862 745752 + transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0817 AFE_0818 AFE_0818 AFE_0818 745902 748331 - plasma-membrane proton-efflux P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01647 gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0818 AFE_0819 AFE_0819 AFE_0819 748692 748853 + hypothetical protein identified by glimmer%3B putative gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0819 AFE_0820 AFE_0820 AFE_0820 749367 749567 - hypothetical protein identified by glimmer%3B putative gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0820 AFE_0821 AFE_0821 AFE_0821 749485 749961 - conserved domain protein gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0821 AFE_0822 AFE_0822 AFE_0822 750211 750522 - hypothetical protein identified by glimmer%3B putative gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0822 AFE_0823 AFE_0823 AFE_0823 749954 750226 + hypothetical protein identified by glimmer%3B putative gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0823 AFE_0824 AFE_0824 AFE_0824 750515 750805 - conserved hypothetical protein gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0824 AFE_0825 AFE_0825 AFE_0825 750844 750993 + hypothetical protein identified by glimmer%3B putative gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0825 AFE_0826 AFE_0826 AFE_0826 751066 752628 + type I restriction-modification system%2C M subunit identified by match to protein family HMM PF02384 gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0826 AFE_0827 AFE_0827 AFE_0827 752625 754205 + ATP-dependent DNA helicase%2C putative identified by similarity to SP:O50224 gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0827 AFE_0828 AFE_0828 AFE_0828 754202 755269 + conserved hypothetical protein identified by similarity to GB:AAM31899.1 gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0828 AFE_0829 AFE_0829 AFE_0829 755229 756458 + type I restriction-modification system%2C S subunit identified by match to protein family HMM PF01420 gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0829 AFE_0830 AFE_0830 AFE_0830 757067 757255 - hypothetical protein identified by glimmer%3B putative gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0830 AFE_0831 AFE_0831 AFE_0831 756547 757095 + hypothetical protein identified by glimmer%3B putative gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0831 AFE_0832 AFE_0832 AFE_0832 757229 758089 + conserved hypothetical protein gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0832 AFE_0833 AFE_0833 AFE_0833 758164 759162 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0833 AFE_0834 AFE_0834 AFE_0834 759155 760096 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0834 AFE_0835 AFE_0835 AFE_0835 760093 761337 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0835 AFE_0836 AFE_0836 AFE_0836 761560 762087 + transposase%2C degenerate identified by similarity to GB:AAK47199.1 gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0836 AFE_0837 AFE_0837 AFE_0837 762091 762930 + general secretion pathway protein A%2C putative identified by similarity to SP:P45754 gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0837 AFE_0838 AFE_0838 AFE_0838 762941 763144 + hypothetical protein identified by glimmer%3B putative gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0838 AFE_0839 AFE_0839 AFE_0839 763384 763509 - hypothetical protein identified by glimmer%3B putative gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0839 AFE_0840 AFE_0840 AFE_0840 763539 766352 + hypothetical protein identified by glimmer%3B putative gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0840 AFE_0841 AFE_0841 AFE_0841 766358 769279 + type I restriction-modification system%2C R subunit identified by match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00348 gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0841 AFE_0842 AFE_0842 AFE_0842 769297 769632 + conserved hypothetical protein identified by similarity to PIR:B82823%3B match to protein family HMM PF01863 gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0842 AFE_0843 AFE_0843 AFE_0843 769808 770032 - conserved hypothetical protein gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0843 AFE_0844 AFE_0844 AFE_0844 770087 770165 - tRNA-Arg tRNA gene842 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0844 AFE_0845 AFE_0845 uvrB uvrB 770300 772327 + excinuclease ABC%2C B subunit identified by match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00631 gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0845 AFE_0846 AFE_0846 AFE_0846 772432 773481 + alcohol dehydrogenase%2C zinc-containing identified by similarity to SP:P75691%3B match to protein family HMM PF00107%3B match to protein family HMM PF08240 gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0846 AFE_0847 AFE_0847 pyrG pyrG 773696 775333 + CTP synthase identified by similarity to SP:P08398%3B match to protein family HMM PF00117%3B match to protein family HMM PF06418%3B match to protein family HMM TIGR00337 gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0847 AFE_0848 AFE_0848 kdsA kdsA 775330 776175 + 3-deoxy-8-phosphooctulonate synthase identified by similarity to SP:O66496%3B match to protein family HMM PF00793%3B match to protein family HMM TIGR01362 gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0848 AFE_0849 AFE_0849 eno eno 776172 777452 + enolase identified by match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060 gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0849 AFE_0850 AFE_0850 AFE_0850 777406 777873 + septum formation initiator family protein identified by match to protein family HMM PF04977 gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0850 AFE_0851 AFE_0851 efp efp 777927 778487 - translation elongation factor P identified by match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM PF09285%3B match to protein family HMM TIGR00038 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0851 AFE_0852 AFE_0852 AFE_0852 778578 778880 + conserved hypothetical protein identified by similarity to GB:CAD13985.1%3B match to protein family HMM PF06155 gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0852 AFE_0853 AFE_0853 uvrC uvrC 778958 780784 + excinuclease ABC%2C C subunit identified by match to protein family HMM PF00633%3B match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM PF08459%3B match to protein family HMM TIGR00194 gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0853 AFE_0854 AFE_0854 pgsA pgsA 780787 781377 + CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00560 gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0854 AFE_0855 AFE_0855 AFE_0855 781400 781474 + tRNA-Gly tRNA gene853 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0855 AFE_0856 AFE_0856 AFE_0856 781514 781589 + tRNA-Cys tRNA gene854 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0856 AFE_0857 AFE_0857 AFE_0857 781692 782381 + transcriptional regulator%2C Crp/Fnr family identified by match to protein family HMM PF00027%3B match to protein family HMM PF00325 gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0857 AFE_0858 AFE_0858 AFE_0858 782410 782802 - conserved hypothetical protein identified by similarity to GB:CAE33148.1 gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0858 AFE_0859 AFE_0859 AFE_0859 782846 784057 - pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992 gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0859 AFE_0860 AFE_0860 AFE_0860 784139 785122 - iron-sulfur cluster-binding protein/oxidoreductase%2C FAD/NAD-binding identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0860 AFE_0861 AFE_0861 AFE_0861 785186 785647 - globin domain protein identified by match to protein family HMM PF00042 gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0861 AFE_0862 AFE_0862 AFE_0862 785774 786937 - drug resistance transporter%2C putative identified by match to protein family HMM PF00529 gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0862 AFE_0863 AFE_0863 AFE_0863 786940 788373 - RND efflux system%2C drug efflux transporter%2C outer membrane lipoprotein identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01845 gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0863 AFE_0864 AFE_0864 AFE_0864 788373 789917 - drug resistance transporter%2C EmrB/QacA family identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711 gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0864 AFE_0865 AFE_0865 AFE_0865 790943 791209 - conserved hypothetical protein identified by similarity to PIR:F70416 gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0865 AFE_0866 AFE_0866 AFE_0866 790023 790946 + transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0866 AFE_0867 AFE_0867 AFE_0867 791272 791496 - hypothetical protein identified by glimmer%3B putative gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0867 AFE_0868 AFE_0868 AFE_0868 791475 792202 + group II intron maturase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to GB:AAB68949.1 pseudogene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0868 AFE_0869 AFE_0869 AFE_0869 792363 792605 + addiction module antitoxin%2C Axe family identified by match to protein family HMM PF02604%3B match to protein family HMM TIGR01552 gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0869 AFE_0870 AFE_0870 AFE_0870 792602 792865 + addiction module toxin%2C Txe/YoeB family identified by similarity to GB:CAD85263.1%3B match to protein family HMM TIGR02116 gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0870 AFE_0871 AFE_0871 AFE_0871 793071 793475 + heat shock protein%2C Hsp20 family identified by similarity to GB:CAE31747.1%3B match to protein family HMM PF00011 gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0871 AFE_0872 AFE_0872 lon-2 lon-2 793472 795838 + ATP-dependent protease La identified by similarity to SP:P36772%3B match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763 gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0872 AFE_0873 AFE_0873 AFE_0873 795942 796250 - hypothetical protein identified by glimmer%3B putative gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0873 AFE_0874 AFE_0874 AFE_0874 796454 797101 - phenazine biosynthesis protein%2C PhzF family%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0874 AFE_0875 AFE_0875 AFE_0875 797107 797583 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0875 AFE_0876 AFE_0876 AFE_0876 797789 798466 - hypothetical protein identified by glimmer%3B putative gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0876 AFE_0877 AFE_0877 AFE_0877 798573 798788 - transposition helper protein%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated pseudogene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0877 AFE_0878 AFE_0878 AFE_0878 798852 799364 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0878 AFE_0879 AFE_0879 AFE_0879 799956 800627 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126 gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0879 AFE_0880 AFE_0880 AFE_0880 800723 801269 + oxidoreductase%2C putative%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAO64293.1 pseudogene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0880 AFE_0881 AFE_0881 AFE_0881 801528 802106 + conserved hypothetical protein identified by similarity to GB:BAC62652.1 gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0881 AFE_0882 AFE_0882 AFE_0882 802103 803266 + flavin monoamine oxidase family protein identified by similarity to SP:P40974%3B match to protein family HMM PF01266 gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0882 AFE_0883 AFE_0883 AFE_0883 803263 803382 + conserved hypothetical protein identified by similarity to GB:BAC19717.1 gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0883 AFE_0884 AFE_0884 AFE_0884 803375 803615 + aminotransferase%2C class II%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:Q08432 pseudogene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0884 AFE_0885 AFE_0885 AFE_0885 803716 803820 - hypothetical protein identified by glimmer%3B putative gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0885 AFE_0886 AFE_0886 AFE_0886 803840 804175 + shufflon-specific DNA recombinase%2C putative%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0886 AFE_0887 AFE_0887 AFE_0887 804656 804823 - hypothetical protein identified by glimmer%3B putative gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0887 AFE_0888 AFE_0888 AFE_0888 804368 804661 + conserved hypothetical protein identified by similarity to SP:Q97AY8%3B match to protein family HMM PF01906 gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0888 AFE_0889 AFE_0889 AFE_0889 804909 805163 + stability protein StbD%2C putative identified by similarity to GB:AAC84003.1%3B match to protein family HMM PF02604 gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0889 AFE_0890 AFE_0890 AFE_0890 805153 805434 + stability protein StbE%2C putative identified by similarity to GB:AAC84004.1%3B match to protein family HMM PF05016%3B match to protein family HMM TIGR02385 gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0890 AFE_0891 AFE_0891 AFE_0891 805843 805918 - tRNA-Thr tRNA gene889 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0891 AFE_0892 AFE_0892 AFE_0892 805977 807200 - conserved hypothetical protein identified by similarity to GB:AAO53956.1%3B match to protein family HMM PF02475%3B match to protein family HMM PF05175 gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0892 AFE_0893 AFE_0893 eiF2B eiF2B 807355 808407 + translation initiation factor%2C putative%2C aIF-2BI family identified by match to protein family HMM PF01008%3B match to protein family HMM TIGR00512%3B match to protein family HMM TIGR00524 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0893 AFE_0894 AFE_0894 gyrA gyrA 808464 811001 + DNA gyrase%2C A subunit identified by similarity to SP:P09097%3B match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063 gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0894 AFE_0895 AFE_0895 serC serC 811009 812097 + phosphoserine aminotransferase identified by similarity to SP:P23721%3B match to protein family HMM PF00266%3B match to protein family HMM TIGR01364 gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0895 AFE_0896 AFE_0896 serA serA 812109 813692 + D-3-phosphoglycerate dehydrogenase identified by similarity to SP:P35136%3B match to protein family HMM PF00389%3B match to protein family HMM PF01842%3B match to protein family HMM PF02826%3B match to protein family HMM TIGR01327 gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0896 AFE_0897 AFE_0897 pheA pheA 813689 814765 + chorismate mutase/prephenate dehydratase identified by similarity to SP:P27603%3B match to protein family HMM PF00800%3B match to protein family HMM PF01817%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR01807 gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0897 AFE_0898 AFE_0898 hisC-2 hisC-2 814767 815864 + histidinol-phosphate aminotransferase identified by similarity to SP:P17731%3B match to protein family HMM PF00155%3B match to protein family HMM PF00266%3B match to protein family HMM TIGR01141 gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0898 AFE_0899 AFE_0899 AFE_0899 815869 816885 + phospho-2-dehydro-3-deoxyheptonate aldolase identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR01361 gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0899 AFE_0900 AFE_0900 tyrA tyrA 816857 817762 + prephenate dehydrogenase identified by similarity to SP:P20692%3B match to protein family HMM PF02153 gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0900 AFE_0901 AFE_0901 aroA aroA 817766 819067 + 3-phosphoshikimate 1-carboxyvinyltransferase identified by similarity to SP:P20691%3B match to protein family HMM PF00275%3B match to protein family HMM TIGR01356 gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0901 AFE_0902 AFE_0902 cmk cmk 819064 819744 + cytidylate kinase identified by match to protein family HMM PF02224%3B match to protein family HMM TIGR00017 gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0902 AFE_0903 AFE_0903 rpsA rpsA 819822 821528 + ribosomal protein S1 identified by similarity to SP:P02349%3B match to protein family HMM PF00575%3B match to protein family HMM TIGR00717 gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0903 AFE_0904 AFE_0904 AFE_0904 821549 821653 - hypothetical protein identified by glimmer%3B putative gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0904 AFE_0905 AFE_0905 ihfB ihfB 821685 821990 + integration host factor%2C beta subunit identified by match to protein family HMM PF00216%3B match to protein family HMM TIGR00988 gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0905 AFE_0906 AFE_0906 AFE_0906 822007 823161 + conserved hypothetical protein identified by similarity to SP:P45576 gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0906 AFE_0907 AFE_0907 pyrF pyrF 823149 823880 + orotidine 5`-phosphate decarboxylase identified by similarity to SP:Q59654%3B match to protein family HMM PF00215%3B match to protein family HMM TIGR01740 gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0907 AFE_0908 AFE_0908 pyrE pyrE 823965 824534 + orotate phosphoribosyltransferase identified by similarity to SP:Q60016%3B match to protein family HMM PF00156%3B match to protein family HMM TIGR01367 gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0908 AFE_0909 AFE_0909 tig tig 824587 825891 + trigger factor identified by similarity to SP:P22257%3B match to protein family HMM PF00254%3B match to protein family HMM PF05697%3B match to protein family HMM PF05698%3B match to protein family HMM TIGR00115 gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0909 AFE_0910 AFE_0910 clpP clpP 825937 826581 + ATP-dependent Clp protease%2C proteolytic subunit ClpP identified by similarity to SP:P19245%3B match to protein family HMM PF00574%3B match to protein family HMM TIGR00493 gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0910 AFE_0911 AFE_0911 clpX clpX 826600 827871 + ATP-dependent Clp protease%2C ATP-binding subunit ClpX identified by similarity to SP:P33138%3B match to protein family HMM PF00004%3B match to protein family HMM PF06689%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00382 gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0911 AFE_0912 AFE_0912 lon-1 lon-1 828005 830395 + ATP-dependent protease La identified by similarity to SP:P08177%3B match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763 gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0912 AFE_0913 AFE_0913 AFE_0913 830411 830539 - hypothetical protein identified by glimmer%3B putative gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0913 AFE_0914 AFE_0914 hup hup 830639 830911 + DNA-binding protein HU identified by similarity to SP:P02341%3B match to protein family HMM PF00216 gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0914 AFE_0915 AFE_0915 AFE_0915 830923 831000 + tRNA-Val tRNA gene913 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0915 AFE_0916 AFE_0916 AFE_0916 831010 831088 + tRNA-Asp tRNA gene914 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0916 AFE_0917 AFE_0917 AFE_0917 831254 832823 + peptidyl-prolyl cis-trans isomerse D%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P77241 pseudogene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0917 AFE_0918 AFE_0918 AFE_0918 832835 833437 - PAP2 family protein identified by match to protein family HMM PF01569 gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0918 AFE_0919 AFE_0919 AFE_0919 833449 834090 - conserved hypothetical protein identified by similarity to GB:CAD14235.1 gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0919 AFE_0920 AFE_0920 AFE_0920 834332 835702 + metal ion transporter%2C NRAMP family gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0920 AFE_0921 AFE_0921 AFE_0921 835713 835913 + hypothetical protein identified by glimmer%3B putative gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0921 AFE_0922 AFE_0922 AFE_0922 835910 837373 + drug resistance transporter%2C EmrB/QacA family identified by match to protein family HMM PF07690 gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0922 AFE_0923 AFE_0923 AFE_0923 837374 838039 - conserved hypothetical protein identified by similarity to GB:AAM85366.1 gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0923 AFE_0924 AFE_0924 glnD glnD 838080 840668 - protein-P-II uridylyltransferase identified by match to protein family HMM PF01842%3B match to protein family HMM PF01966%3B match to protein family HMM PF08335%3B match to protein family HMM TIGR01693 gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0924 AFE_0925 AFE_0925 map map 840671 841480 - methionine aminopeptidase%2C type I identified by similarity to SP:P07906%3B match to protein family HMM PF00557%3B match to protein family HMM TIGR00500 gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0925 AFE_0926 AFE_0926 sfsA sfsA 841499 842197 - sugar fermentation stimulation protein identified by match to protein family HMM PF03749%3B match to protein family HMM TIGR00230 gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0926 AFE_0927 AFE_0927 AFE_0927 842208 843098 - glutamyl-tRNA synthetase-related protein identified by match to protein family HMM PF00749 gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0927 AFE_0928 AFE_0928 thiL thiL 843160 844182 + thiamine-monophosphate kinase identified by similarity to SP:P77785%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR01379 gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0928 AFE_0929 AFE_0929 pgpA pgpA 844172 844660 + phosphatidylglycerophosphatase A identified by match to protein family HMM PF04608 gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0929 AFE_0930 AFE_0930 AFE_0930 844657 845502 + CinA family protein identified by match to protein family HMM PF02464%3B match to protein family HMM TIGR00199 gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0930 AFE_0931 AFE_0931 AFE_0931 845555 845683 + hypothetical protein identified by glimmer%3B putative gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0931 AFE_0932 AFE_0932 recA recA 845676 846713 + recA protein identified by similarity to SP:P16238%3B match to protein family HMM PF00154%3B match to protein family HMM TIGR02012 gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0932 AFE_0933 AFE_0933 recX recX 846714 847166 + regulatory protein RecX identified by match to protein family HMM PF02631 gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0933 AFE_0934 AFE_0934 alaS alaS 847236 849869 + alanyl-tRNA synthetase identified by similarity to SP:P00957%3B match to protein family HMM PF01411%3B match to protein family HMM PF02272%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344 gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0934 AFE_0935 AFE_0935 AFE_0935 849893 850471 - hypothetical protein identified by glimmer%3B putative gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0935 AFE_0936 AFE_0936 hoxW hoxW 850468 850986 - hydrogenase maturation protease gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0936 AFE_0937 AFE_0937 hoxH hoxH 850983 852251 - [NiFe] hydrogenase%2C alpha subunit%2C putative identified by similarity to GB:BAC00531.1%3B match to protein family HMM PF00374 gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0937 AFE_0938 AFE_0938 hoxY hoxY 852265 853062 - [NiFe] hydrogenase%2C delta subunit%2C putative identified by similarity to GB:BAC00530.1%3B match to protein family HMM PF01058 gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0938 AFE_0939 AFE_0939 hoxU hoxU 853067 853897 - [NiFe] hydrogenase%2C gamma subunit%2C putative identified by similarity to GB:BAC00529.1%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0939 AFE_0940 AFE_0940 hoxF hoxF 853890 854996 - [NiFe] hydrogenase%2C beta subunit%2C putative identified by similarity to GB:BAC00528.1%3B match to protein family HMM PF00037 gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0940 AFE_0941 AFE_0941 AFE_0941 855073 856992 - murein transglycosylase%2C putative identified by similarity to SP:P03810%3B match to protein family HMM PF01464 gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0941 AFE_0942 AFE_0942 AFE_0942 857210 860551 - DNA helicase%2C SNF2/RAD54 family identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271%3B match to protein family HMM PF04434 gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0942 AFE_0943 AFE_0943 AFE_0943 860731 862182 + phosphomannomutase%2C putative identified by similarity to SP:P26405%3B match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880 gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0943 AFE_0944 AFE_0944 AFE_0944 862166 862474 + hypothetical protein identified by glimmer%3B putative gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0944 AFE_0945 AFE_0945 AFE_0945 862487 864079 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0945 AFE_0946 AFE_0946 AFE_0946 864196 864369 - hypothetical protein identified by glimmer%3B putative gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0946 AFE_0948 AFE_0948 thiC thiC 864398 866281 + thiamine biosynthesis protein ThiC identified by similarity to SP:P30136%3B match to protein family HMM PF01964%3B match to protein family HMM TIGR00190 gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0948 AFE_0949 AFE_0949 AFE_0949 866307 866771 - conserved hypothetical protein identified by similarity to GB:AAO57577.1 gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0949 AFE_0950 AFE_0950 AFE_0950 866776 868023 - oxidoreductase%2C GMC family identified by match to protein family HMM PF00732%3B match to protein family HMM PF01266 gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0950 AFE_0951 AFE_0951 AFE_0951 868053 869459 - aldehyde dehydrogenase (NAD) family protein identified by match to protein family HMM PF00171 gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0951 AFE_0952 AFE_0952 AFE_0952 869514 869615 - hypothetical protein identified by glimmer%3B putative gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0952 AFE_0953 AFE_0953 AFE_0953 869633 869836 - conserved domain protein gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0953 AFE_0954 AFE_0954 cydB cydB 869849 870982 - cytochrome d ubiquinol oxidase%2C subunit II identified by match to protein family HMM PF02322%3B match to protein family HMM TIGR00203 gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0954 AFE_0955 AFE_0955 cydA cydA 871042 872670 - cytochrome d ubiquinol oxidase%2C subunit I identified by similarity to SP:Q09049%3B match to protein family HMM PF01654 gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0955 AFE_0956 AFE_0956 AFE_0956 872687 873562 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0956 AFE_0957 AFE_0957 AFE_0957 873727 875082 + sigma-54 dependent transcriptional regulator identified by match to protein family HMM PF00158%3B match to protein family HMM PF07728 gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0957 AFE_0958 AFE_0958 AFE_0958 875719 877137 - pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0958 AFE_0959 AFE_0959 AFE_0959 875141 875722 + phospholipase/carboxylesterase identified by match to protein family HMM PF02230 gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0959 AFE_0960 AFE_0960 mdoG mdoG 877541 879085 + periplasmic glucans biosynthesis protein%2C MdoG identified by similarity to SP:P33136%3B match to protein family HMM PF04349 gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0960 AFE_0961 AFE_0961 AFE_0961 879085 879588 + hypothetical protein identified by glimmer%3B putative gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0961 AFE_0962 AFE_0962 mdoH mdoH 879591 881669 + periplasmic glucans biosynthesis protein MdoH identified by similarity to SP:P33137%3B match to protein family HMM PF00535 gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0962 AFE_0963 AFE_0963 AFE_0963 881688 882704 - male sterility protein identified by similarity to GB:CAE34367.1%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF05368%3B match to protein family HMM PF07993 gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0963 AFE_0964 AFE_0964 AFE_0964 882717 883280 + membrane protein%2C putative identified by match to protein family HMM PF04241 gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0964 AFE_0965 AFE_0965 AFE_0965 883261 883668 + hypothetical protein identified by glimmer%3B putative gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0965 AFE_0966 AFE_0966 AFE_0966 883707 885059 - conserved hypothetical protein gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0966 AFE_0967 AFE_0967 AFE_0967 885340 888753 - type IV pilin biogenesis protein%2C putative identified by similarity to GB:AAQ58159.1 gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0967 AFE_0968 AFE_0968 AFE_0968 888750 889337 - hypothetical protein identified by glimmer%3B putative gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0968 AFE_0969 AFE_0969 AFE_0969 889334 890467 - type IV pilin%2C putative identified by match to protein family HMM TIGR02532 gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0969 AFE_0970 AFE_0970 AFE_0970 890470 890970 - type IV pilin%2C putative identified by similarity to GB:AAB48595.1%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0970 AFE_0971 AFE_0971 AFE_0971 890955 891521 - pilin signal sequence domain protein identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0971 AFE_0972 AFE_0972 pilC pilC 891511 892770 - type IV pilus biogenesis protein PilC identified by similarity to SP:P45793%3B match to protein family HMM PF00482 gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0972 AFE_0973 AFE_0973 AFE_0973 892877 893881 - type IV pilin biogenesis peptidase%2C putative identified by similarity to SP:P24213%3B match to protein family HMM PF01343%3B match to protein family HMM PF08496 gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0973 AFE_0974 AFE_0974 AFE_0974 893861 893965 + hypothetical protein identified by glimmer%3B putative gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0974 AFE_0975 AFE_0975 moaD moaD 893989 894231 + molybdopterin converting factor%2C subunit 1 identified by similarity to SP:P30748%3B match to protein family HMM PF02597 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0975 AFE_0976 AFE_0976 moaE moaE 894234 894728 + molybdopterin converting factor%2C subunit 2 identified by similarity to SP:P30749%3B match to protein family HMM PF02391 gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0976 AFE_0977 AFE_0977 AFE_0977 894735 895220 + conserved hypothetical protein identified by match to protein family HMM PF04461 gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0977 AFE_0978 AFE_0978 AFE_0978 895238 895567 + roadblock/LC7 domain protein identified by similarity to GB:CAB71242.1%3B match to protein family HMM PF03259 gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0978 AFE_0979 AFE_0979 gcvT gcvT 895573 896691 + glycine cleavage system T protein identified by match to protein family HMM PF01571%3B match to protein family HMM PF08669%3B match to protein family HMM TIGR00528 gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0979 AFE_0980 AFE_0980 gcvH gcvH 896688 897071 + glycine cleavage system H protein identified by match to protein family HMM PF01597%3B match to protein family HMM TIGR00527 gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0980 AFE_0981 AFE_0981 gcvP gcvP 897077 898420 + glycine dehydrogenase%2C decarboxylating identified by match to protein family HMM PF02347 gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0981 AFE_0982 AFE_0982 AFE_0982 898342 899868 + glycine dehydrogenase (decarboxylating)%2C subunit 2 gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0982 AFE_0983 AFE_0983 AFE_0983 899873 901561 - ABC transporter%2C ATP-binding protein%2C MsbA family identified by similarity to SP:P27299%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0983 AFE_0984 AFE_0984 AFE_0984 901558 901881 - ferredoxin identified by similarity to SP:P08811%3B match to protein family HMM PF00037 gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0984 AFE_0985 AFE_0985 AFE_0985 902168 902770 + antioxidant%2C AhpC/Tsa family identified by match to protein family HMM PF00578%3B match to protein family HMM PF08534 gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0985 AFE_0986 AFE_0986 AFE_0986 902869 903699 - hypothetical protein identified by glimmer%3B putative gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0986 AFE_0987 AFE_0987 AFE_0987 903698 904558 + conserved hypothetical protein identified by similarity to GB:CAE41414.1%3B match to protein family HMM PF02811 gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0987 AFE_0988 AFE_0988 AFE_0988 904658 905698 + membrane protein%2C putative gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0988 AFE_0989 AFE_0989 AFE_0989 905813 906505 - hypothetical protein identified by glimmer%3B putative gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0989 AFE_0990 AFE_0990 AFE_0990 906355 906747 + hypothetical protein identified by glimmer%3B putative gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0990 AFE_0991 AFE_0991 AFE_0991 906740 907507 + tRNA (guanosine-2'-O-)-methyltransferase%2C putative identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186 gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0991 AFE_0992 AFE_0992 AFE_0992 907532 908305 + hydrolase%2C TatD family identified by match to protein family HMM PF01026%3B match to protein family HMM TIGR00010 gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0992 AFE_0993 AFE_0993 AFE_0993 908302 909060 + metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0993 AFE_0994 AFE_0994 AFE_0994 909149 909224 + tRNA-Ala tRNA gene991 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0994 AFE_0995 AFE_0995 AFE_0995 909231 910280 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0995 AFE_0996 AFE_0996 AFE_0996 910130 910489 - DNA binding protein%2C excisionase family identified by match to protein family HMM TIGR01764 gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0996 AFE_0997 AFE_0997 AFE_0997 910510 910932 - hypothetical protein identified by glimmer%3B putative gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0997 AFE_0998 AFE_0998 AFE_0998 911295 912026 - transcriptional regulator%2C putative identified by similarity to SP:Q06553%3B match to protein family HMM PF00717%3B match to protein family HMM PF01381%3B match to protein family HMM PF07022 gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0998 AFE_0999 AFE_0999 AFE_0999 912109 912318 + prophage Afe01%2C transcriptional regulator%2C Cro family identified by similarity to SP:P76063 gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_0999 AFE_1000 AFE_1000 AFE_1000 912929 913564 + BRO family protein identified by match to protein family HMM PF02498 gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1000 AFE_1001 AFE_1001 AFE_1001 913773 914957 + hypothetical protein identified by glimmer%3B putative gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1001 AFE_1002 AFE_1002 AFE_1002 914990 915688 + conserved hypothetical protein identified by similarity to GB:AAM08041.1 gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1002 AFE_1003 AFE_1003 AFE_1003 915678 915878 + hypothetical protein identified by glimmer%3B putative gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1003 AFE_1004 AFE_1004 AFE_1004 915875 916090 + hypothetical protein identified by glimmer%3B putative gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1004 AFE_1005 AFE_1005 AFE_1005 916204 916956 + hypothetical protein identified by glimmer%3B putative gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1005 AFE_1006 AFE_1006 AFE_1006 916983 917486 + hypothetical protein identified by glimmer%3B putative gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1006 AFE_1007 AFE_1007 AFE_1007 917483 918112 + transglycosylase%2C putative identified by match to protein family HMM PF01464 gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1007 AFE_1008 AFE_1008 AFE_1008 918078 918452 + hypothetical protein identified by glimmer%3B putative gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1008 AFE_1009 AFE_1009 AFE_1009 918356 918514 + hypothetical protein identified by glimmer%3B putative gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1009 AFE_1010 AFE_1010 AFE_1010 918496 918792 + hypothetical protein identified by glimmer%3B putative gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1010 AFE_1011 AFE_1011 AFE_1011 918779 919054 + hypothetical protein identified by glimmer%3B putative gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1011 AFE_1012 AFE_1012 AFE_1012 919164 919439 + hypothetical protein identified by glimmer%3B putative gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1012 AFE_1013 AFE_1013 AFE_1013 919436 921553 + DNA topoisomerase I%2C putative identified by match to protein family HMM PF01131%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051 gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1013 AFE_1014 AFE_1014 AFE_1014 921696 922022 + hypothetical protein identified by glimmer%3B putative gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1014 AFE_1015 AFE_1015 AFE_1015 922023 922373 + hypothetical protein identified by glimmer%3B putative gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1015 AFE_1016 AFE_1016 AFE_1016 922373 923242 + lipoprotein%2C putative gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1016 AFE_1017 AFE_1017 AFE_1017 923239 923397 + hypothetical protein identified by glimmer%3B putative gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1017 AFE_1018 AFE_1018 AFE_1018 923384 923932 + thiol:disulfide interchange domain protein identified by similarity to SP:P77202 gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1018 AFE_1019 AFE_1019 AFE_1019 924286 924396 - hypothetical protein identified by glimmer%3B putative gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1019 AFE_1020 AFE_1020 AFE_1020 924381 924656 + hypothetical protein identified by glimmer%3B putative gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1020 AFE_1021 AFE_1021 AFE_1021 924674 924922 + conserved domain protein identified by similarity to GB:AAO35815.1 gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1021 AFE_1022 AFE_1022 AFE_1022 924960 925817 + patatin-like phospholipase family protein identified by match to protein family HMM PF01734 gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1022 AFE_1023 AFE_1023 AFE_1023 926062 927426 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1023 AFE_1024 AFE_1024 AFE_1024 927479 928069 + membrane-associated zinc metalloprotease%2C putative identified by similarity to GB:AAP58571.1%3B match to protein family HMM PF02163 gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1024 AFE_1025 AFE_1025 AFE_1025 928127 928570 + hypothetical protein identified by glimmer%3B putative gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1025 AFE_1026 AFE_1026 AFE_1026 928656 928748 - hypothetical protein identified by glimmer%3B putative gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1026 AFE_1027 AFE_1027 AFE_1027 928715 928864 - hypothetical protein identified by glimmer%3B putative gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1027 AFE_1028 AFE_1028 AFE_1028 928854 929747 + conserved hypothetical protein identified by similarity to GB:CAC11876.1 gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1028 AFE_1029 AFE_1029 AFE_1029 929744 930427 + hypothetical protein identified by glimmer%3B putative gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1029 AFE_1030 AFE_1030 AFE_1030 930584 930796 - conserved hypothetical protein gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1030 AFE_1031 AFE_1031 AFE_1031 930796 931074 - conserved hypothetical protein gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1031 AFE_1032 AFE_1032 AFE_1032 931090 931689 + hypothetical protein identified by glimmer%3B putative gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1032 AFE_1033 AFE_1033 AFE_1033 931727 932341 + transposon%2C resolvase Adjacent to a gene for transposase%3B identified by match to protein family HMM PF00239 gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1033 AFE_1034 AFE_1034 AFE_1034 932338 933843 + transposon%2C transposase Adjacent to a gene for resolvase%3B identified by match to protein family HMM PF07282 gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1034 AFE_1035 AFE_1035 AFE_1035 933855 934244 + hypothetical protein identified by glimmer%3B putative gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1035 AFE_1036 AFE_1036 AFE_1036 934313 935020 + hypothetical protein identified by glimmer%3B putative gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1036 AFE_1037 AFE_1037 csf4 csf4 935088 937397 - CRISPR-associated DEAD/DEAH-box helicase Csf4 identified by match to protein family HMM TIGR03117 gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1037 AFE_1038 AFE_1038 csf1 csf1 937392 938141 + CRISPR-associated protein%2C Csf1 family identified by match to protein family HMM TIGR03114 gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1038 AFE_1039 AFE_1039 csf2 csf2 938138 939199 + CRISPR-associated protein%2C Csf2 family identified by match to protein family HMM TIGR03115 gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1039 AFE_1040 AFE_1040 csf3 csf3 939196 939888 + CRISPR-associated protein%2C Csf3 family identified by match to protein family HMM TIGR03116 gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1040 AFE_1041 AFE_1041 AFE_1041 939901 940068 + hypothetical protein identified by glimmer%3B putative gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1041 AFE_1042 AFE_1042 AFE_1042 939999 940628 + hypothetical protein identified by glimmer%3B putative gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1042 AFE_1044 AFE_1044 AFE_1044 942655 942924 - hypothetical protein identified by glimmer%3B putative gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1044 AFE_1045 AFE_1045 AFE_1045 942952 943341 + hypothetical protein identified by glimmer%3B putative gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1045 AFE_1046 AFE_1046 AFE_1046 943345 943788 + conserved hypothetical protein gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1046 AFE_1047 AFE_1047 AFE_1047 943788 945923 + helicase%2C RecD/TraA family identified by match to protein family HMM TIGR01448 gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1047 AFE_1048 AFE_1048 AFE_1048 946028 946726 + hypothetical protein identified by glimmer%3B putative gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1048 AFE_1049 AFE_1049 AFE_1049 946745 946987 + lipoprotein%2C putative gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1049 AFE_1050 AFE_1050 AFE_1050 947030 947323 - hypothetical protein identified by glimmer%3B putative gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1050 AFE_1051 AFE_1051 AFE_1051 947295 947564 + hypothetical protein identified by glimmer%3B putative gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1051 AFE_1052 AFE_1052 AFE_1052 947587 947796 + hypothetical protein identified by glimmer%3B putative gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1052 AFE_1053 AFE_1053 AFE_1053 947846 949570 + conserved domain protein identified by similarity to GB:AAF69908.1%3B match to protein family HMM PF01507 gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1053 AFE_1054 AFE_1054 AFE_1054 949567 950457 + hypothetical protein identified by glimmer%3B putative gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1054 AFE_1055 AFE_1055 AFE_1055 950462 951001 + hypothetical protein identified by glimmer%3B putative gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1055 AFE_1056 AFE_1056 AFE_1056 951321 951545 + hypothetical protein identified by glimmer%3B putative gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1056 AFE_1057 AFE_1057 AFE_1057 951571 953220 + TPR domain/sulfotransferase domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF00685%3B match to protein family HMM PF07719 gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1057 AFE_1058 AFE_1058 AFE_1058 953382 954608 - ISAfe8%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1058 AFE_1059 AFE_1059 AFE_1059 954716 955378 + hypothetical protein identified by glimmer%3B putative gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1059 AFE_1060 AFE_1060 AFE_1060 955400 955894 + hypothetical protein identified by glimmer%3B putative gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1060 AFE_1061 AFE_1061 AFE_1061 956536 956898 - hypothetical protein identified by glimmer%3B putative gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1061 AFE_1062 AFE_1062 AFE_1062 955905 956570 + hypothetical protein identified by glimmer%3B putative gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1062 AFE_1063 AFE_1063 AFE_1063 956877 957275 + hypothetical protein identified by glimmer%3B putative gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1063 AFE_1064 AFE_1064 AFE_1064 957470 958138 - hypothetical protein identified by glimmer%3B putative gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1064 AFE_1065 AFE_1065 AFE_1065 958215 958805 + conjugal transfer protein%2C putative identified by similarity to GB:BAC81997.1%3B match to protein family HMM PF01464 gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1065 AFE_1066 AFE_1066 AFE_1066 958886 959899 + pilus assembly protein TraF%2C putative gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1066 AFE_1067 AFE_1067 AFE_1067 959911 961590 + pilus assembly protein TraH%2C putative identified by similarity to SP:P15069 gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1067 AFE_1068 AFE_1068 AFE_1068 961593 965249 + pilus assembly protein TraG%2C putative identified by similarity to GB:AAK61533.1 gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1068 AFE_1069 AFE_1069 AFE_1069 965317 965826 + hypothetical protein identified by glimmer%3B putative gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1069 AFE_1070 AFE_1070 AFE_1070 966017 966292 - DNA-binding protein%2C HU family identified by match to protein family HMM PF00216 gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1070 AFE_1071 AFE_1071 AFE_1071 966291 966830 + conserved hypothetical protein identified by similarity to GB:CAD84733.1 gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1071 AFE_1072 AFE_1072 AFE_1072 966834 967562 + conserved hypothetical protein identified by match to protein family HMM PF08808 gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1072 AFE_1073 AFE_1073 AFE_1073 967633 968574 + BRO family protein identified by match to protein family HMM PF02498 gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1073 AFE_1074 AFE_1074 AFE_1074 968571 968825 + hypothetical protein identified by glimmer%3B putative gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1074 AFE_1075 AFE_1075 AFE_1075 968890 970008 + conserved hypothetical protein gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1075 AFE_1076 AFE_1076 AFE_1076 970041 970391 + hypothetical protein identified by glimmer%3B putative gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1076 AFE_1077 AFE_1077 AFE_1077 970391 971269 + hypothetical protein identified by glimmer%3B putative gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1077 AFE_1078 AFE_1078 traL traL 971257 971535 + type IV conjugative transfer system protein TraL identified by similarity to GB:AAM08076.1%3B match to protein family HMM TIGR02762 gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1078 AFE_1079 AFE_1079 traE traE 971532 972146 + type IV conjugative transfer system protein TraE identified by similarity to GB:AAL27019.1%3B match to protein family HMM TIGR02761 gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1079 AFE_1080 AFE_1080 traK traK 972143 973315 + TraK lipoprotein%2C putative identified by similarity to GB:AAM90706.1 gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1080 AFE_1081 AFE_1081 AFE_1081 973312 974943 + conjugal transfer protein%2C putative identified by similarity to GB:AAD54048.1 gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1081 AFE_1082 AFE_1082 traV traV 974940 975437 + conjugal transfer protein TraV%2C putative identified by similarity to SP:P41069%3B match to protein family HMM TIGR02747 gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1082 AFE_1083 AFE_1083 AFE_1083 975850 976389 - hypothetical protein identified by glimmer%3B putative gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1083 AFE_1084 AFE_1084 traA traA 975473 975880 + conjugal transfer protein TraA%2C putative identified by similarity to GB:AAM08062.1 gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1084 AFE_1085 AFE_1085 AFE_1085 976486 977310 + thiol:disulfide interchange domain protein identified by similarity to SP:P77202 gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1085 AFE_1086 AFE_1086 AFE_1086 977363 978286 + hypothetical protein identified by glimmer%3B putative gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1086 AFE_1087 AFE_1087 AFE_1087 978463 979653 + type II/IV secretion system protein identified by match to protein family HMM PF00437 gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1087 AFE_1088 AFE_1088 AFE_1088 979643 980407 + thiol:disulfide interchange protein%2C DsbA family identified by similarity to SP:Q44504 gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1088 AFE_1089 AFE_1089 traC traC 980404 983004 + type-IV secretion system protein TraC identified by similarity to SP:P18004%3B match to protein family HMM TIGR02746 gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1089 AFE_1090 AFE_1090 AFE_1090 983004 983498 + hypothetical protein identified by glimmer%3B putative gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1090 AFE_1091 AFE_1091 AFE_1091 983458 984012 + conjugation signal peptidase TraF%2C putative identified by similarity to SP:P26844%3B similarity to GB:AAL59670.1 gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1091 AFE_1092 AFE_1092 AFE_1092 984901 985194 - hypothetical protein identified by glimmer%3B putative gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1092 AFE_1093 AFE_1093 AFE_1093 984124 985092 + hypothetical protein identified by glimmer%3B putative gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1093 AFE_1094 AFE_1094 AFE_1094 985277 985909 + hypothetical protein identified by glimmer%3B putative gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1094 AFE_1095 AFE_1095 AFE_1095 985906 987174 + pilus assembly protein TraW%2C putative identified by similarity to SP:P18472 gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1095 AFE_1096 AFE_1096 AFE_1096 987452 988702 + conjugal transfer protein TraU%2C putative identified by similarity to SP:P18471 gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1096 AFE_1097 AFE_1097 AFE_1097 988768 991827 + conjugal transfer protein TraN%2C putative identified by similarity to SP:P24082 gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1097 AFE_1098 AFE_1098 AFE_1098 991885 992124 + pemI family protein identified by similarity to SP:P18534%3B match to protein family HMM PF04014 gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1098 AFE_1099 AFE_1099 chpA chpA 992124 992465 + ChpA protein identified by similarity to SP:P33645%3B match to protein family HMM PF02452 gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1099 AFE_1100 AFE_1100 AFE_1100 992568 993596 + hypothetical protein identified by glimmer%3B putative gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1100 AFE_1101 AFE_1101 AFE_1101 993708 993800 + conserved domain protein identified by similarity to PIR:S77285 gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1101 AFE_1102 AFE_1102 AFE_1102 993850 994122 + hypothetical protein identified by glimmer%3B putative gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1102 AFE_1103 AFE_1103 AFE_1103 994216 995241 + hypothetical protein identified by glimmer%3B putative gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1103 AFE_1104 AFE_1104 AFE_1104 995241 996518 + conserved domain protein%2C putative identified by similarity to SP:P08407 gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1104 AFE_1105 AFE_1105 AFE_1105 996622 997212 + transposon%2C resolvase Adjacent to a gene for transposase%3B identified by match to protein family HMM PF00239 gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1105 AFE_1106 AFE_1106 AFE_1106 997209 998858 + transposon%2C transposase Adjacent to a gene for resolvase%3B identified by match to protein family HMM TIGR01766 gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1106 AFE_1107 AFE_1107 AFE_1107 999219 999761 + hypothetical protein identified by glimmer%3B putative gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1107 AFE_1108 AFE_1108 AFE_1108 999791 1000096 + hypothetical protein identified by glimmer%3B putative gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1108 AFE_1109 AFE_1109 AFE_1109 1000305 1000982 + conserved domain protein identified by similarity to GB:BAC41664.1%3B match to protein family HMM PF08378 gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1109 AFE_1110 AFE_1110 AFE_1110 1001068 1002294 - ISAfe3%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1110 AFE_1111 AFE_1111 AFE_1111 1002336 1002755 + hypothetical protein identified by glimmer%3B putative gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1111 AFE_1112 AFE_1112 AFE_1112 1002755 1003066 + hypothetical protein identified by glimmer%3B putative gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1112 AFE_1113 AFE_1113 AFE_1113 1003063 1003296 + hypothetical protein identified by glimmer%3B putative gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1113 AFE_1114 AFE_1114 htpX-1 htpX-1 1003537 1004358 + heat shock protein HtpX identified by similarity to SP:P23894%3B match to protein family HMM PF01435 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1114 AFE_1115 AFE_1115 AFE_1115 1004470 1005354 + Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1115 AFE_1116 AFE_1116 AFE_1116 1005351 1005590 + hypothetical protein identified by glimmer%3B putative gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1116 AFE_1117 AFE_1117 AFE_1117 1005805 1006014 + conserved domain protein identified by similarity to GB:CAB97518.1 gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1117 AFE_1118 AFE_1118 AFE_1118 1006007 1006258 + hypothetical protein identified by glimmer%3B putative gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1118 AFE_1119 AFE_1119 AFE_1119 1006239 1006487 + hypothetical protein identified by glimmer%3B putative gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1119 AFE_1120 AFE_1120 AFE_1120 1006534 1007487 + hypothetical protein identified by glimmer%3B putative gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1120 AFE_1121 AFE_1121 AFE_1121 1007484 1008092 + hypothetical protein identified by glimmer%3B putative gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1121 AFE_1122 AFE_1122 AFE_1122 1008142 1008399 + conserved hypothetical protein identified by similarity to GB:BAB48203.1 gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1122 AFE_1123 AFE_1123 AFE_1123 1008704 1009240 - hypothetical protein identified by glimmer%3B putative gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1123 AFE_1124 AFE_1124 AFE_1124 1009216 1009458 + hypothetical protein identified by glimmer%3B putative gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1124 AFE_1125 AFE_1125 AFE_1125 1009464 1009790 + hypothetical protein identified by glimmer%3B putative gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1125 AFE_1126 AFE_1126 AFE_1126 1009811 1010182 + hypothetical protein identified by glimmer%3B putative gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1126 AFE_1127 AFE_1127 AFE_1127 1010179 1010730 + nucleoside 2-deoxyribosyltransferase family protein identified by similarity to PIR:A83628%3B match to protein family HMM PF05014 gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1127 AFE_1128 AFE_1128 AFE_1128 1010761 1011288 + hypothetical protein identified by glimmer%3B putative gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1128 AFE_1129 AFE_1129 AFE_1129 1011311 1011439 + lipoprotein%2C putative gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1129 AFE_1130 AFE_1130 AFE_1130 1011478 1011603 + hypothetical protein identified by glimmer%3B putative gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1130 AFE_1131 AFE_1131 AFE_1131 1012107 1012523 + hypothetical protein identified by glimmer%3B putative gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1131 AFE_1132 AFE_1132 AFE_1132 1013038 1013496 - hypothetical protein identified by glimmer%3B putative gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1132 AFE_1133 AFE_1133 AFE_1133 1012629 1013108 + conserved hypothetical protein identified by similarity to GB:AAN68171.1 gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1133 AFE_1134 AFE_1134 AFE_1134 1013972 1014079 - hypothetical protein identified by glimmer%3B putative gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1134 AFE_1135 AFE_1135 AFE_1135 1014070 1014771 + hypothetical protein identified by glimmer%3B putative gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1135 AFE_1136 AFE_1136 AFE_1136 1014753 1015283 + membrane protein%2C DedA family identified by similarity to PIR:AH3439%3B match to protein family HMM PF09335 gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1136 AFE_1137 AFE_1137 AFE_1137 1015352 1017589 + ATP-dependent DNA helicase%2C UvrD/REP family identified by match to protein family HMM PF00580 gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1137 AFE_1138 AFE_1138 AFE_1138 1017579 1017854 + hypothetical protein identified by glimmer%3B putative gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1138 AFE_1139 AFE_1139 AFE_1139 1018070 1018246 - hypothetical protein identified by glimmer%3B putative gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1139 AFE_1140 AFE_1140 AFE_1140 1017855 1018163 + conserved domain protein identified by similarity to GB:BAC09421.1 gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1140 AFE_1141 AFE_1141 AFE_1141 1018220 1019098 + conserved hypothetical protein identified by similarity to PIR:H90361 gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1141 AFE_1142 AFE_1142 AFE_1142 1019378 1020604 + ISAfe3%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1142 AFE_1143 AFE_1143 AFE_1143 1020609 1021214 - hypothetical protein identified by glimmer%3B putative gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1143 AFE_1144 AFE_1144 AFE_1144 1021715 1021924 + dihydroorotate dehydrogenase domain protein%2C putative identified by similarity to SP:Q8XYY7 gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1144 AFE_1145 AFE_1145 AFE_1145 1022137 1023042 - tyrosine recombinase%2C phage integrase family identified by similarity to SP:P46352%3B similarity to SP:Q8YJP2%3B match to protein family HMM PF00589 gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1145 AFE_1146 AFE_1146 AFE_1146 1023249 1023611 + hypothetical protein identified by glimmer%3B putative gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1146 AFE_1147 AFE_1147 AFE_1147 1023623 1023889 + hypothetical protein identified by glimmer%3B putative gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1147 AFE_1148 AFE_1148 AFE_1148 1023901 1024455 + hypothetical protein identified by glimmer%3B putative gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1148 AFE_1149 AFE_1149 AFE_1149 1024642 1025079 - hypothetical protein identified by glimmer%3B putative gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1149 AFE_1150 AFE_1150 AFE_1150 1025220 1025762 - hypothetical protein identified by glimmer%3B putative gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1150 AFE_1151 AFE_1151 AFE_1151 1025772 1025867 - hypothetical protein identified by glimmer%3B putative gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1151 AFE_1152 AFE_1152 AFE_1152 1025907 1026452 - HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1152 AFE_1153 AFE_1153 AFE_1153 1026498 1026725 - hypothetical protein identified by glimmer%3B putative gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1153 AFE_1154 AFE_1154 AFE_1154 1026725 1027123 - hypothetical protein identified by glimmer%3B putative gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1154 AFE_1155 AFE_1155 AFE_1155 1027145 1027220 - tRNA-Arg tRNA gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1155 AFE_1156 AFE_1156 AFE_1156 1027226 1027301 - tRNA-Arg tRNA gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1156 AFE_1157 AFE_1157 AFE_1157 1027556 1027640 - tRNA-Leu tRNA gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1157 AFE_1158 AFE_1158 AFE_1158 1027655 1027730 - tRNA-Phe tRNA gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1158 AFE_1159 AFE_1159 AFE_1159 1027735 1027821 - tRNA-Leu tRNA gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1159 AFE_1160 AFE_1160 AFE_1160 1027970 1028045 - tRNA-Lys tRNA gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1160 AFE_1161 AFE_1161 AFE_1161 1028058 1028133 - tRNA-Gln tRNA gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1161 AFE_1162 AFE_1162 AFE_1162 1028140 1028227 - tRNA-Leu tRNA gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1162 AFE_1163 AFE_1163 AFE_1163 1028242 1028320 - tRNA-Glu tRNA gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1163 AFE_1164 AFE_1164 AFE_1164 1028332 1028408 - tRNA-Glu tRNA gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1164 AFE_1165 AFE_1165 AFE_1165 1028409 1028484 - tRNA-Arg tRNA gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1165 AFE_1166 AFE_1166 AFE_1166 1028877 1028952 - tRNA-Ile tRNA gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1166 AFE_1167 AFE_1167 AFE_1167 1028958 1029033 - tRNA-Val tRNA gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1167 AFE_1168 AFE_1168 AFE_1168 1029039 1029114 - tRNA-Met tRNA gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1168 AFE_1169 AFE_1169 AFE_1169 1029150 1029401 - hypothetical protein identified by glimmer%3B putative gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1169 AFE_1170 AFE_1170 AFE_1170 1029474 1029983 + hypothetical protein identified by glimmer%3B putative gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1170 AFE_1171 AFE_1171 AFE_1171 1029986 1030060 - tRNA-Met tRNA gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1171 AFE_1172 AFE_1172 AFE_1172 1030071 1030145 - tRNA-Cys tRNA gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1172 AFE_1173 AFE_1173 AFE_1173 1030150 1030226 - tRNA-Gln tRNA gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1173 AFE_1174 AFE_1174 AFE_1174 1030242 1030520 - hypothetical protein identified by glimmer%3B putative gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1174 AFE_1175 AFE_1175 AFE_1175 1030545 1030620 - tRNA-Thr tRNA gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1175 AFE_1176 AFE_1176 AFE_1176 1031115 1031396 - hypothetical protein identified by glimmer%3B putative gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1176 AFE_1177 AFE_1177 AFE_1177 1031415 1031490 - tRNA-Thr tRNA gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1177 AFE_1178 AFE_1178 AFE_1178 1031930 1032673 - hypothetical protein identified by glimmer%3B putative gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1178 AFE_1179 AFE_1179 AFE_1179 1032725 1032803 - tRNA-Asp tRNA gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1179 AFE_1180 AFE_1180 AFE_1180 1032815 1032892 - tRNA-His tRNA gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1180 AFE_1181 AFE_1181 AFE_1181 1032910 1033001 - tRNA-Ser tRNA gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1181 AFE_1182 AFE_1182 AFE_1182 1033006 1033081 - tRNA-Lys tRNA gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1182 AFE_1183 AFE_1183 AFE_1183 1033086 1033163 - tRNA-Pro tRNA gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1183 AFE_1184 AFE_1184 AFE_1184 1033175 1033259 - tRNA-Tyr tRNA gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1184 AFE_1185 AFE_1185 AFE_1185 1033390 1033481 - tRNA-Ser tRNA gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1185 AFE_1186 AFE_1186 AFE_1186 1033528 1033618 - tRNA-Ser tRNA gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1186 AFE_1187 AFE_1187 AFE_1187 1033694 1033780 - tRNA-Leu tRNA gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1187 AFE_1188 AFE_1188 AFE_1188 1033799 1033891 - tRNA-Ser tRNA gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1188 AFE_1189 AFE_1189 AFE_1189 1034132 1034210 - tRNA-Pro tRNA gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1189 AFE_1190 AFE_1190 AFE_1190 1034309 1034385 - tRNA-Asn tRNA gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1190 AFE_1191 AFE_1191 AFE_1191 1035026 1035103 - tRNA-Ala tRNA gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1191 AFE_1192 AFE_1192 AFE_1192 1035250 1035325 - tRNA-Gly tRNA gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1192 AFE_1193 AFE_1193 AFE_1193 1035589 1035660 - tRNA-OTHER tRNA gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1193 AFE_1194 AFE_1194 AFE_1194 1035935 1036013 - tRNA-Trp tRNA gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1194 AFE_1195 AFE_1195 AFE_1195 1036224 1036385 - hypothetical protein identified by glimmer%3B putative gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1195 AFE_1196 AFE_1196 AFE_1196 1036357 1036500 + hypothetical protein identified by glimmer%3B putative gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1196 AFE_1197 AFE_1197 AFE_1197 1036579 1037418 - conserved domain protein identified by similarity to GB:BAC74789.1 gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1197 AFE_1198 AFE_1198 AFE_1198 1037647 1037916 - hypothetical protein identified by glimmer%3B putative gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1198 AFE_1199 AFE_1199 rnhA-1 rnhA-1 1037913 1038350 - ribonuclease HI identified by match to protein family HMM PF00075 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1199 AFE_1200 AFE_1200 AFE_1200 1038371 1038994 - hypothetical protein identified by glimmer%3B putative gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1200 AFE_1201 AFE_1201 tnsA-1 tnsA-1 1039166 1039996 + Tn5468%2C transposase protein A identified by similarity to PIR:T45494%3B match to protein family HMM PF08721%3B match to protein family HMM PF08722 gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1201 AFE_1202 AFE_1202 tnsB-1 tnsB-1 1039993 1042161 + Tn5468%2C transposase protein B identified by similarity to PIR:T45495 gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1202 AFE_1203 AFE_1203 tnsC-1 tnsC-1 1042142 1043800 + Tn5468%2C transposition protein C identified by similarity to PIR:T45496 gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1203 AFE_1204 AFE_1204 tnsD-1 tnsD-1 1043812 1045641 + Tn5468%2C transposition protein D identified by similarity to PIR:T45497 gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1204 AFE_1205 AFE_1205 AFE_1205 1045661 1047328 + Tn5468%2C orf5 identified by similarity to PIR:T45498 gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1205 AFE_1206 AFE_1206 AFE_1206 1047410 1050838 - hypothetical protein identified by glimmer%3B putative gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1206 AFE_1207 AFE_1207 AFE_1207 1050913 1051005 - hypothetical protein identified by glimmer%3B putative gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1207 AFE_1208 AFE_1208 AFE_1208 1051042 1054017 + outer membrane autotransporter TapA identified by similarity to GB:CAC14218.1%3B match to protein family HMM TIGR01414 gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1208 AFE_1209 AFE_1209 AFE_1209 1054149 1064603 + outer membrane autotransporter%2C putative identified by match to protein family HMM TIGR01414 gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1209 AFE_1210 AFE_1210 AFE_1210 1064536 1065282 + oxidoreductase%2C 2OG-Fe(II) oxygenase family identified by match to protein family HMM PF03171 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1210 AFE_1211 AFE_1211 AFE_1211 1065275 1067362 + TPR domain/sulfotransferase domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF00685%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1211 AFE_1212 AFE_1212 AFE_1212 1067359 1068516 + conserved hypothetical protein identified by similarity to GB:CAD16952.1 gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1212 AFE_1213 AFE_1213 AFE_1213 1069192 1069338 - hypothetical protein identified by glimmer%3B putative gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1213 AFE_1214 AFE_1214 AFE_1214 1069934 1070398 - hypothetical protein identified by glimmer%3B putative gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1214 AFE_1215 AFE_1215 AFE_1215 1070500 1071726 - ISAfe8%2C transposase identified by match to protein family HMM PF01385%3B match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1215 AFE_1216 AFE_1216 AFE_1216 1071811 1072161 - hypothetical protein identified by glimmer%3B putative gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1216 AFE_1217 AFE_1217 AFE_1217 1072193 1072804 - uracil-DNA glycosylase%2C family 4 identified by match to protein family HMM PF03167 gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1217 AFE_1218 AFE_1218 AFE_1218 1072804 1073520 - conserved domain protein identified by similarity to PIR:A97990 gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1218 AFE_1219 AFE_1219 AFE_1219 1073541 1074502 - conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAO53604.1 pseudogene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1219 AFE_1220 AFE_1220 AFE_1220 1074584 1075369 - hypothetical protein identified by glimmer%3B putative gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1220 AFE_1221 AFE_1221 AFE_1221 1075392 1076006 - modification methylase%2C putative identified by similarity to SP:P11409 gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1221 AFE_1222 AFE_1222 AFE_1222 1076212 1076925 + hypothetical protein identified by glimmer%3B putative gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1222 AFE_1223 AFE_1223 AFE_1223 1076987 1077580 - hypothetical protein identified by glimmer%3B putative gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1223 AFE_1224 AFE_1224 AFE_1224 1076934 1077062 + hypothetical protein identified by glimmer%3B putative gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1224 AFE_1225 AFE_1225 AFE_1225 1077701 1077793 - hypothetical protein identified by glimmer%3B putative gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1225 AFE_1226 AFE_1226 AFE_1226 1077839 1080466 - GTP-binding protein identified by match to protein family HMM PF02463 gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1226 AFE_1227 AFE_1227 AFE_1227 1080466 1081581 - Ser/Thr protein phosphatase family protein identified by match to protein family HMM PF00149 gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1227 AFE_1228 AFE_1228 AFE_1228 1081774 1082214 + hypothetical protein identified by glimmer%3B putative gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1228 AFE_1229 AFE_1229 AFE_1229 1082240 1082926 - EAL domain protein identified by match to protein family HMM PF00563 gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1229 AFE_1230 AFE_1230 AFE_1230 1082930 1084759 - DNA ligase%2C NAD-dependent%2C putative identified by match to protein family HMM PF00533%3B match to protein family HMM PF01653%3B match to protein family HMM PF03120 gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1230 AFE_1231 AFE_1231 AFE_1231 1084756 1084983 - hypothetical protein identified by glimmer%3B putative gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1231 AFE_1232 AFE_1232 AFE_1232 1085271 1086209 - hypothetical protein identified by glimmer%3B putative gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1232 AFE_1233 AFE_1233 AFE_1233 1086194 1086649 - hypothetical protein identified by glimmer%3B putative gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1233 AFE_1234 AFE_1234 AFE_1234 1086655 1086978 - lipoprotein%2C putative identified by match to protein family HMM PF05433 gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1234 AFE_1235 AFE_1235 AFE_1235 1087010 1087678 - lipoprotein%2C putative gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1235 AFE_1236 AFE_1236 AFE_1236 1087692 1088339 - hypothetical protein identified by glimmer%3B putative gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1236 AFE_1237 AFE_1237 AFE_1237 1088355 1088720 - hypothetical protein identified by glimmer%3B putative gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1237 AFE_1238 AFE_1238 AFE_1238 1088997 1089170 - hypothetical protein identified by glimmer%3B putative gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1238 AFE_1239 AFE_1239 AFE_1239 1089174 1089374 - hypothetical protein identified by glimmer%3B putative gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1239 AFE_1240 AFE_1240 AFE_1240 1089374 1089718 - hypothetical protein identified by glimmer%3B putative gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1240 AFE_1241 AFE_1241 AFE_1241 1090147 1090422 - DNA-binding protein HU family protein identified by match to protein family HMM PF00216 gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1241 AFE_1242 AFE_1242 AFE_1242 1089791 1090249 + hypothetical protein identified by glimmer%3B putative gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1242 AFE_1243 AFE_1243 AFE_1243 1090415 1090729 - hypothetical protein identified by glimmer%3B putative gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1243 AFE_1244 AFE_1244 AFE_1244 1090726 1091016 - hypothetical protein identified by glimmer%3B putative gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1244 AFE_1245 AFE_1245 AFE_1245 1091016 1091528 - hypothetical protein identified by glimmer%3B putative gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1245 AFE_1246 AFE_1246 AFE_1246 1091625 1091840 + hypothetical protein identified by glimmer%3B putative gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1246 AFE_1247 AFE_1247 AFE_1247 1091852 1092022 + hypothetical protein identified by glimmer%3B putative gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1247 AFE_1248 AFE_1248 AFE_1248 1092194 1092451 - hypothetical protein identified by glimmer%3B putative gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1248 AFE_1249 AFE_1249 AFE_1249 1092444 1093496 - hypothetical protein identified by glimmer%3B putative gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1249 AFE_1250 AFE_1250 AFE_1250 1093608 1093799 + hypothetical protein identified by glimmer%3B putative gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1250 AFE_1251 AFE_1251 AFE_1251 1093796 1095655 + lipoprotein%2C putative gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1251 AFE_1252 AFE_1252 AFE_1252 1096686 1097222 - hypothetical protein identified by glimmer%3B putative gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1252 AFE_1253 AFE_1253 AFE_1253 1095652 1096761 + hypothetical protein identified by glimmer%3B putative gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1253 AFE_1254 AFE_1254 AFE_1254 1097205 1099712 + hypothetical protein identified by glimmer%3B putative gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1254 AFE_1255 AFE_1255 AFE_1255 1099712 1100605 + hypothetical protein identified by glimmer%3B putative gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1255 AFE_1256 AFE_1256 AFE_1256 1100598 1101200 + hypothetical protein identified by glimmer%3B putative gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1256 AFE_1257 AFE_1257 AFE_1257 1101328 1102272 - hypothetical protein identified by glimmer%3B putative gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1257 AFE_1258 AFE_1258 AFE_1258 1102269 1103558 - DNA topoisomerase domain protein gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1258 AFE_1259 AFE_1259 AFE_1259 1103578 1103790 - hypothetical protein identified by glimmer%3B putative gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1259 AFE_1260 AFE_1260 ssb-3 ssb-3 1103755 1104240 + single-strand binding protein identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1260 AFE_1261 AFE_1261 AFE_1261 1104272 1104502 + hypothetical protein identified by glimmer%3B putative gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1261 AFE_1262 AFE_1262 AFE_1262 1104548 1104748 - hypothetical protein identified by glimmer%3B putative gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1262 AFE_1263 AFE_1263 AFE_1263 1104831 1105514 - hypothetical protein identified by glimmer%3B putative gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1263 AFE_1264 AFE_1264 AFE_1264 1105489 1109700 - hypothetical protein identified by glimmer%3B putative gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1264 AFE_1265 AFE_1265 AFE_1265 1109805 1111031 - ISAfe3%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1265 AFE_1266 AFE_1266 AFE_1266 1111173 1113290 - hypothetical protein identified by glimmer%3B putative gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1266 AFE_1267 AFE_1267 AFE_1267 1113548 1113655 - hypothetical protein identified by glimmer%3B putative gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1267 AFE_1268 AFE_1268 AFE_1268 1114017 1114166 - hypothetical protein identified by glimmer%3B putative gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1268 AFE_1269 AFE_1269 AFE_1269 1113674 1114078 + hypothetical protein identified by glimmer%3B putative gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1269 AFE_1270 AFE_1270 AFE_1270 1114293 1114928 + single-stranded DNA-binding protein%2C ERF family gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1270 AFE_1271 AFE_1271 AFE_1271 1115118 1115372 + hypothetical protein identified by glimmer%3B putative gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1271 AFE_1272 AFE_1272 AFE_1272 1115383 1115778 + hypothetical protein identified by glimmer%3B putative gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1272 AFE_1273 AFE_1273 AFE_1273 1115993 1116475 + hypothetical protein identified by glimmer%3B putative gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1273 AFE_1274 AFE_1274 AFE_1274 1116533 1116886 + hypothetical protein identified by glimmer%3B putative gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1274 AFE_1275 AFE_1275 AFE_1275 1116883 1117794 + conserved hypothetical protein gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1275 AFE_1276 AFE_1276 AFE_1276 1117910 1118200 + hypothetical protein identified by glimmer%3B putative gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1276 AFE_1277 AFE_1277 AFE_1277 1118335 1118781 + hypothetical protein identified by glimmer%3B putative gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1277 AFE_1278 AFE_1278 AFE_1278 1118792 1119235 + hypothetical protein identified by glimmer%3B putative gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1278 AFE_1279 AFE_1279 AFE_1279 1119247 1119705 + hypothetical protein identified by glimmer%3B putative gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1279 AFE_1280 AFE_1280 AFE_1280 1119904 1120218 - hypothetical protein identified by glimmer%3B putative gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1280 AFE_1281 AFE_1281 AFE_1281 1120192 1120425 + hypothetical protein identified by glimmer%3B putative gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1281 AFE_1282 AFE_1282 AFE_1282 1120685 1121170 + hypothetical protein identified by glimmer%3B putative gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1282 AFE_1283 AFE_1283 AFE_1283 1121293 1122102 + conserved hypothetical protein identified by similarity to PIR:F82867 gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1283 AFE_1284 AFE_1284 AFE_1284 1122105 1122551 + hypothetical protein identified by glimmer%3B putative gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1284 AFE_1285 AFE_1285 AFE_1285 1122692 1123012 + conserved domain protein identified by similarity to GB:AAL55518.2 gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1285 AFE_1286 AFE_1286 AFE_1286 1123040 1123954 + conserved hypothetical protein identified by similarity to GB:AAL59709.1%3B match to protein family HMM TIGR03033 gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1286 AFE_1287 AFE_1287 AFE_1287 1124083 1124322 + hypothetical protein identified by glimmer%3B putative gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1287 AFE_1288 AFE_1288 AFE_1288 1124322 1124777 + hypothetical protein identified by glimmer%3B putative gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1288 AFE_1289 AFE_1289 AFE_1289 1124808 1125167 + hypothetical protein identified by glimmer%3B putative gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1289 AFE_1290 AFE_1290 AFE_1290 1125164 1125601 + hypothetical protein identified by glimmer%3B putative gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1290 AFE_1291 AFE_1291 AFE_1291 1125620 1126051 + hypothetical protein identified by glimmer%3B putative gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1291 AFE_1292 AFE_1292 AFE_1292 1126191 1128125 + conserved hypothetical protein identified by similarity to GB:AAL59705.1 gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1292 AFE_1293 AFE_1293 AFE_1293 1128277 1128618 + hypothetical protein identified by glimmer%3B putative gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1293 AFE_1294 AFE_1294 AFE_1294 1128593 1128763 + hypothetical protein identified by glimmer%3B putative gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1294 AFE_1295 AFE_1295 AFE_1295 1128803 1129441 + DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF02954 gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1295 AFE_1296 AFE_1296 AFE_1296 1129497 1130459 + transcriptional regulator%2C LysR family identified by similarity to SP:Q47083%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1296 AFE_1297 AFE_1297 AFE_1297 1130614 1131534 + cobalamin biosynthesis protein%2C CobS family identified by match to protein family HMM PF07728 gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1297 AFE_1298 AFE_1298 AFE_1298 1131706 1131906 + hypothetical protein identified by glimmer%3B putative gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1298 AFE_1299 AFE_1299 AFE_1299 1131919 1132812 + hypothetical protein identified by glimmer%3B putative gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1299 AFE_1300 AFE_1300 AFE_1300 1132941 1133351 + hypothetical protein identified by glimmer%3B putative gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1300 AFE_1301 AFE_1301 AFE_1301 1133482 1134501 + hypothetical protein identified by glimmer%3B putative gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1301 AFE_1302 AFE_1302 AFE_1302 1134627 1134971 + hypothetical protein identified by glimmer%3B putative gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1302 AFE_1303 AFE_1303 AFE_1303 1135418 1135639 - conserved domain protein identified by similarity to SP:O59347 gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1303 AFE_1304 AFE_1304 AFE_1304 1135661 1136290 + transposon%2C resolvase A gene for transposase is adjacent%3B identified by match to protein family HMM PF00239%3B match to protein family HMM PF00376 gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1304 AFE_1305 AFE_1305 AFE_1305 1136287 1137681 + transposon%2C transposase A gene for resolvase is adjacent. gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1305 AFE_1306 AFE_1306 AFE_1306 1138008 1138391 - hypothetical protein identified by glimmer%3B putative gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1306 AFE_1307 AFE_1307 AFE_1307 1137805 1138149 + hypothetical protein identified by glimmer%3B putative gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1307 AFE_1308 AFE_1308 AFE_1308 1138370 1139140 + hypothetical protein identified by glimmer%3B putative gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1308 AFE_1309 AFE_1309 AFE_1309 1139409 1139561 - hypothetical protein identified by glimmer%3B putative gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1309 AFE_1310 AFE_1310 AFE_1310 1139512 1139631 + hypothetical protein identified by glimmer%3B putative gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1310 AFE_1311 AFE_1311 AFE_1311 1139674 1140201 + hypothetical protein identified by glimmer%3B putative gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1311 AFE_1312 AFE_1312 AFE_1312 1140247 1140414 - hypothetical protein identified by glimmer%3B putative gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1312 AFE_1313 AFE_1313 AFE_1313 1140454 1141008 + hypothetical protein identified by glimmer%3B putative gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1313 AFE_1314 AFE_1314 AFE_1314 1141227 1141397 - hypothetical protein identified by glimmer%3B putative gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1314 AFE_1315 AFE_1315 AFE_1315 1141127 1141258 + hypothetical protein identified by glimmer%3B putative gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1315 AFE_1316 AFE_1316 AFE_1316 1141345 1141626 + hypothetical protein identified by glimmer%3B putative gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1316 AFE_1317 AFE_1317 AFE_1317 1141790 1141990 + hypothetical protein identified by glimmer%3B putative gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1317 AFE_1318 AFE_1318 AFE_1318 1142009 1142212 + conserved hypothetical protein identified by similarity to GB:CAE32168.1 gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1318 AFE_1319 AFE_1319 AFE_1319 1142209 1142349 + hypothetical protein identified by glimmer%3B putative gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1319 AFE_1320 AFE_1320 AFE_1320 1142391 1142939 - hypothetical protein identified by glimmer%3B putative gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1320 AFE_1321 AFE_1321 AFE_1321 1143029 1143364 - conserved hypothetical protein identified by similarity to SP:Q8TKM0%3B match to protein family HMM PF01906 gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1321 AFE_1322 AFE_1322 AFE_1322 1143383 1144000 - hypothetical protein identified by glimmer%3B putative gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1322 AFE_1323 AFE_1323 AFE_1323 1144043 1144984 - hypothetical protein identified by glimmer%3B putative gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1323 AFE_1324 AFE_1324 AFE_1324 1145282 1145497 - hypothetical protein identified by glimmer%3B putative gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1324 AFE_1325 AFE_1325 AFE_1325 1145618 1145965 + hypothetical protein identified by glimmer%3B putative gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1325 AFE_1326 AFE_1326 AFE_1326 1145997 1146689 + conserved hypothetical protein identified by similarity to PIR:H85644%3B match to protein family HMM PF08346 gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1326 AFE_1327 AFE_1327 AFE_1327 1146884 1147639 + conserved hypothetical protein identified by similarity to GB:AAP95799.1 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1327 AFE_1328 AFE_1328 AFE_1328 1147883 1149202 + transposase%2C IS605 OrfB family protein%2C putative identified by match to protein family HMM PF07282%3B match to protein family HMM TIGR01766 gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1328 AFE_1329 AFE_1329 AFE_1329 1149174 1149338 + hypothetical protein identified by glimmer%3B putative gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1329 AFE_1330 AFE_1330 AFE_1330 1149446 1150708 + ISAfe2%2C transposase similar to IST2%2C transposase%3B identified by match to protein family HMM PF00872 gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1330 AFE_1331 AFE_1331 AFE_1331 1151144 1151512 + hypothetical protein identified by glimmer%3B putative gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1331 AFE_1332 AFE_1332 AFE_1332 1151692 1151904 - hypothetical protein identified by glimmer%3B putative gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1332 AFE_1333 AFE_1333 AFE_1333 1151864 1152244 + conserved hypothetical protein identified by similarity to GB:BAB60367.1 gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1333 AFE_1334 AFE_1334 AFE_1334 1152287 1152388 - hypothetical protein identified by glimmer%3B putative gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1334 AFE_1335 AFE_1335 AFE_1335 1152651 1152947 + hypothetical protein identified by glimmer%3B putative gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1335 AFE_1336 AFE_1336 AFE_1336 1152992 1153210 + hypothetical protein identified by glimmer%3B putative gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1336 AFE_1337 AFE_1337 AFE_1337 1153226 1153321 + hypothetical protein identified by glimmer%3B putative gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1337 AFE_1338 AFE_1338 AFE_1338 1153377 1154420 + PAP2 family protein identified by match to protein family HMM PF01569 gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1338 AFE_1339 AFE_1339 AFE_1339 1154434 1155567 + polysaccharide biosynthesis/export domain protein identified by match to protein family HMM PF02563 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1339 AFE_1340 AFE_1340 AFE_1340 1155636 1158098 + tyrosine-protein kinase%2C putative identified by similarity to SP:P38134%3B match to protein family HMM PF02706 gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1340 AFE_1341 AFE_1341 AFE_1341 1158095 1158856 + protein-tyrosine phosphatase%2C putative identified by similarity to SP:P39852 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1341 AFE_1342 AFE_1342 galE galE 1158856 1159854 + UDP-glucose 4-epimerase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179 gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1342 AFE_1343 AFE_1343 AFE_1343 1159883 1161205 + UDP-glucose 6-dehydrogenase identified by similarity to SP:O54068%3B match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1343 AFE_1344 AFE_1344 AFE_1344 1161287 1162753 + polysaccharide biosynthesis protein identified by match to protein family HMM PF01943 gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1344 AFE_1345 AFE_1345 AFE_1345 1162750 1163445 + conserved domain protein identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1345 AFE_1346 AFE_1346 AFE_1346 1163445 1164476 + glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1346 AFE_1347 AFE_1347 AFE_1347 1164564 1165481 + hypothetical protein identified by glimmer%3B putative gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1347 AFE_1348 AFE_1348 AFE_1348 1165585 1166298 + hypothetical protein identified by glimmer%3B putative gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1348 AFE_1349 AFE_1349 AFE_1349 1166268 1167431 + glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1349 AFE_1350 AFE_1350 AFE_1350 1167428 1168852 + membrane protein%2C putative gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1350 AFE_1351 AFE_1351 AFE_1351 1168849 1170021 + glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1351 AFE_1352 AFE_1352 AFE_1352 1170027 1170206 + lipoprotein%2C putative gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1352 AFE_1353 AFE_1353 asnB asnB 1170207 1172105 + asparagine synthase (glutamine-hydrolyzing) identified by similarity to SP:P54420%3B match to protein family HMM PF00310%3B match to protein family HMM PF00733%3B match to protein family HMM TIGR01536 gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1353 AFE_1354 AFE_1354 AFE_1354 1172111 1173259 + glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1354 AFE_1355 AFE_1355 AFE_1355 1173252 1174493 + glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1355 AFE_1356 AFE_1356 AFE_1356 1174490 1174696 + mannose-1-phosphate guanylyltransferase%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to SP:P37741 pseudogene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1356 AFE_1357 AFE_1357 AFE_1357 1174696 1175847 + glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1357 AFE_1358 AFE_1358 AFE_1358 1175844 1176236 + hypothetical protein identified by glimmer%3B putative gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1358 AFE_1359 AFE_1359 AFE_1359 1176233 1176637 + nucleotidyltransferase%2C putative identified by match to protein family HMM PF01909 gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1359 AFE_1360 AFE_1360 AFE_1360 1176627 1177067 + conserved hypothetical protein identified by similarity to GB:CAE06995.1%3B match to protein family HMM PF05168 gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1360 AFE_1361 AFE_1361 AFE_1361 1177173 1177466 + plasmid stability protein%2C putative identified by similarity to SP:P55510 gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1361 AFE_1362 AFE_1362 AFE_1362 1177463 1177891 + plasmid stability protein%2C putative identified by similarity to SP:P55511%3B match to protein family HMM PF01850 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1362 AFE_1363 AFE_1363 AFE_1363 1178048 1178452 + nucleotidyltransferase%2C putative identified by match to protein family HMM PF01909 gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1363 AFE_1364 AFE_1364 AFE_1364 1178442 1178882 + conserved hypothetical protein identified by similarity to GB:CAE06995.1%3B match to protein family HMM PF05168 gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1364 AFE_1365 AFE_1365 AFE_1365 1179203 1180618 + HNH endonuclease domain protein identified by match to protein family HMM PF01844 gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1365 AFE_1366 AFE_1366 AFE_1366 1180676 1182118 + mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase identified by similarity to SP:P29956%3B match to protein family HMM PF00483%3B match to protein family HMM PF01050%3B match to protein family HMM PF07883%3B match to protein family HMM TIGR01479 gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1366 AFE_1367 AFE_1367 AFE_1367 1182262 1182489 + conserved hypothetical protein identified by similarity to PIR:AF2077%3B match to protein family HMM PF04255 gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1367 AFE_1368 AFE_1368 AFE_1368 1182486 1182839 + conserved hypothetical protein identified by similarity to PIR:AG2077 gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1368 AFE_1369 AFE_1369 AFE_1369 1182889 1183668 + PIN domain protein identified by match to protein family HMM PF01850 gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1369 AFE_1370 AFE_1370 AFE_1370 1183665 1185119 + undecaprenyl-phosphate galactosephosphotransferase%2C putative identified by similarity to SP:P26406%3B match to protein family HMM PF02397%3B match to protein family HMM TIGR03022%3B match to protein family HMM TIGR03025 gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1370 AFE_1371 AFE_1371 AFE_1371 1185141 1189286 + helicase%2C SNF2/RAD54 family identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271 gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1371 AFE_1372 AFE_1372 AFE_1372 1189572 1190738 - fic family protein identified by match to protein family HMM PF02661 gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1372 AFE_1373 AFE_1373 AFE_1373 1191240 1191998 - transposition helper protein identified by similarity to SP:P55923%3B match to protein family HMM PF01695%3B match to protein family HMM PF08483 gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1373 AFE_1374 AFE_1374 AFE_1374 1192016 1192807 - This gene is disrupted by a mobile element%3B transposase%2C interruption-C%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:Q51761 pseudogene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1374 AFE_1375 AFE_1375 AFE_1375 1192897 1193109 + transposon%2C orf1 This element disrupts a gene. gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1375 AFE_1376 AFE_1376 AFE_1376 1193286 1193738 + transposon%2C orf2 This element disrupts a gene. gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1376 AFE_1377 AFE_1377 AFE_1377 1195974 1196861 - This gene is disrupted by a mobile element%3B transposase%2C interruption-N%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:Q51761 pseudogene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1377 AFE_1378 AFE_1378 AFE_1378 1194000 1196084 + transposon%2C orf3 This element disrupts a gene%3B identified by match to protein family HMM PF07508 gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1378 AFE_1379 AFE_1379 AFE_1379 1196897 1197061 - hypothetical protein identified by glimmer%3B putative gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1379 AFE_1380 AFE_1380 AFE_1380 1197205 1197501 - hypothetical protein identified by glimmer%3B putative gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1380 AFE_1381 AFE_1381 AFE_1381 1196985 1197239 + hypothetical protein identified by glimmer%3B putative gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1381 AFE_1382 AFE_1382 AFE_1382 1197505 1197720 - hypothetical protein identified by glimmer%3B putative gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1382 AFE_1383 AFE_1383 AFE_1383 1197717 1198025 - conserved hypothetical protein identified by similarity to PIR:AF1935 gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1383 AFE_1384 AFE_1384 AFE_1384 1198034 1198375 - conserved hypothetical protein identified by similarity to GB:AAP44226.1%3B match to protein family HMM PF05973 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1384 AFE_1385 AFE_1385 AFE_1385 1198443 1200025 - type I restriction-modification system%2C M subunit%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1385 AFE_1386 AFE_1386 AFE_1386 1200024 1200248 + hypothetical protein identified by glimmer%3B putative gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1386 AFE_1387 AFE_1387 AFE_1387 1200631 1201767 + conserved hypothetical protein identified by similarity to PIR:AD2162%3B match to protein family HMM PF08495 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1387 AFE_1388 AFE_1388 cydD cydD 1201870 1203603 + ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydD identified by similarity to SP:P29018%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR02857 gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1388 AFE_1389 AFE_1389 AFE_1389 1205350 1205697 - hypothetical protein identified by glimmer%3B putative gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1389 AFE_1390 AFE_1390 AFE_1390 1203596 1205353 + ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydC identified by similarity to SP:P23886%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02868 gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1390 AFE_1391 AFE_1391 ygfZ ygfZ 1205701 1206666 - folate-binding protein YgfZ identified by match to protein family HMM PF01571%3B match to protein family HMM TIGR03317 gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1391 AFE_1392 AFE_1392 nadB nadB 1207125 1208714 - L-aspartate oxidase identified by similarity to SP:P10902%3B match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00551 gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1392 AFE_1393 AFE_1393 AFE_1393 1206650 1207180 + hypothetical protein identified by glimmer%3B putative gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1393 AFE_1394 AFE_1394 rpoE rpoE 1208831 1209457 + RNA polymerase sigma-E factor identified by similarity to SP:P34086%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02939 gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1394 AFE_1395 AFE_1395 AFE_1395 1209454 1210116 + conserved domain protein identified by similarity to GB:AAQ59731.1 gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1395 AFE_1396 AFE_1396 AFE_1396 1210286 1211725 + serine protease%2C DO/DeqQ family identified by similarity to SP:P09376%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037 gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1396 AFE_1397 AFE_1397 lepA lepA 1211831 1213633 + GTP-binding protein LepA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393 gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1397 AFE_1398 AFE_1398 lepB lepB 1213700 1214491 + signal peptidase I identified by similarity to SP:P26844%3B match to protein family HMM PF00717%3B match to protein family HMM TIGR02227 gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1398 AFE_1399 AFE_1399 AFE_1399 1214574 1215008 + hypothetical protein identified by glimmer%3B putative gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1399 AFE_1400 AFE_1400 rnc rnc 1215071 1215751 + ribonuclease III identified by similarity to SP:P05797%3B match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191 gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1400 AFE_1401 AFE_1401 era era 1215744 1216658 + GTP-binding protein Era identified by match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436%3B match to protein family HMM TIGR00650 gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1401 AFE_1402 AFE_1402 AFE_1402 1216648 1217415 + DNA repair protein RecO%2C putative identified by match to protein family HMM PF02565%3B match to protein family HMM TIGR00613 gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1402 AFE_1403 AFE_1403 pdxJ pdxJ 1217412 1218137 + pyridoxal phosphate biosynthetic protein PdxJ identified by similarity to SP:P24223%3B match to protein family HMM PF03740%3B match to protein family HMM TIGR00559 gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1403 AFE_1404 AFE_1404 acpS acpS 1218134 1218523 + holo-(acyl-carrier-protein) synthase identified by match to protein family HMM PF01648%3B match to protein family HMM TIGR00516%3B match to protein family HMM TIGR00556 gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1404 AFE_1405 AFE_1405 AFE_1405 1218527 1219849 + UDP-glucose 6-dehydrogenase identified by similarity to SP:O54068%3B match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1405 AFE_1406 AFE_1406 AFE_1406 1219851 1220801 + kinase%2C pfkB family identified by similarity to GB:AAD49846.1%3B match to protein family HMM PF00294%3B match to protein family HMM TIGR02198 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1406 AFE_1407 AFE_1407 AFE_1407 1220791 1221573 + PP-loop family protein identified by match to protein family HMM PF01171 gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1407 AFE_1408 AFE_1408 hslO hslO 1221566 1222408 + 33 kDa chaperonin identified by similarity to SP:P45803%3B match to protein family HMM PF01430 gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1408 AFE_1411 AFE_1411 AFE_1411 1222516 1222879 + AftmRNA tmRNA gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1411 AFE_1412 AFE_1412 AFE_1412 1223126 1223632 - conserved hypothetical protein identified by similarity to GB:CAD85910.1 gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1412 AFE_1413 AFE_1413 sohA sohA 1223629 1223958 - htrA suppressor protein identified by similarity to SP:P15373 gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1413 AFE_1414 AFE_1414 AFE_1414 1224098 1224400 - hypothetical protein identified by glimmer%3B putative gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1414 AFE_1415 AFE_1415 AFE_1415 1224415 1224681 - conserved domain protein identified by similarity to GB:BAC17067.1 gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1415 AFE_1416 AFE_1416 AFE_1416 1224727 1224927 - hypothetical protein identified by glimmer%3B putative gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1416 AFE_1417 AFE_1417 AFE_1417 1225026 1225520 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1417 AFE_1418 AFE_1418 AFE_1418 1225517 1225789 - conserved hypothetical protein identified by match to protein family HMM PF08681 gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1418 AFE_1419 AFE_1419 AFE_1419 1225870 1226199 - conserved hypothetical protein identified by similarity to GB:CAD14535.1 gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1419 AFE_1420 AFE_1420 AFE_1420 1226250 1226466 - conserved hypothetical protein%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to GB:CAD86417.1 pseudogene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1420 AFE_1421 AFE_1421 AFE_1421 1226511 1226786 + hypothetical protein identified by glimmer%3B putative gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1421 AFE_1422 AFE_1422 AFE_1422 1226866 1227687 - Ser/Thr protein phosphatase family protein identified by similarity to PIR:F87663%3B match to protein family HMM PF00149 gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1422 AFE_1423 AFE_1423 AFE_1423 1227847 1228188 - hypothetical protein identified by glimmer%3B putative gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1423 AFE_1424 AFE_1424 AFE_1424 1228243 1228371 + hypothetical protein identified by glimmer%3B putative gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1424 AFE_1425 AFE_1425 AFE_1425 1228383 1229504 + glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1425 AFE_1426 AFE_1426 AFE_1426 1230731 1230991 - hypothetical protein identified by glimmer%3B putative gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1426 AFE_1427 AFE_1427 AFE_1427 1229538 1230752 + glycosyl transferase%2C group 1 family protein identified by match to protein family HMM PF00534 gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1427 AFE_1428 AFE_1428 AFE_1428 1231481 1232929 + cytochrome c identified by similarity to GB:CAA07031.1 gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1428 AFE_1429 AFE_1429 AFE_1429 1232944 1233585 + cytochrome c552%2C putative identified by similarity to SP:P74917 gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1429 AFE_1430 AFE_1430 AFE_1430 1233659 1234627 - cation diffusion facilitator family transporter identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1430 AFE_1431 AFE_1431 AFE_1431 1234731 1234967 + transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1431 AFE_1432 AFE_1432 AFE_1432 1234964 1235518 + lipoprotein%2C putative gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1432 AFE_1433 AFE_1433 rhlE rhlE 1235720 1236976 + ATP-dependent RNA helicase RhlE identified by similarity to SP:P25888%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1433 AFE_1434 AFE_1434 phoB phoB 1237096 1237827 + DNA-binding response regulator PhoB identified by similarity to SP:P45605%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486%3B match to protein family HMM TIGR02154 gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1434 AFE_1435 AFE_1435 phoR phoR 1237889 1239217 + phosphate regulon sensor protein PhoR identified by similarity to SP:P08400%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR02966 gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1435 AFE_1436 AFE_1436 pstS-2 pstS-2 1239287 1240306 + phosphate ABC transporter%2C periplasmic phosphate-binding protein identified by similarity to SP:P06128%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR00975 gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1436 AFE_1437 AFE_1437 pstC-2 pstC-2 1240363 1241340 + phosphate ABC transporter%2C permease protein PstC identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR02138 gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1437 AFE_1438 AFE_1438 pstA pstA 1241337 1242191 + phosphate ABC transporter%2C permease protein PstA identified by similarity to SP:P07654%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR00974 gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1438 AFE_1439 AFE_1439 pstB pstB 1242191 1242958 + phosphate ABC transporter%2C ATP-binding protein identified by similarity to SP:P07655%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR00972 gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1439 AFE_1440 AFE_1440 phoU phoU 1242970 1243683 + phosphate transport system protein PhoU identified by similarity to SP:P07656%3B match to protein family HMM PF01895%3B match to protein family HMM TIGR02135 gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1440 AFE_1441 AFE_1441 ppx ppx 1243686 1245197 + exopolyphosphatase identified by similarity to SP:Q9ZN70%3B match to protein family HMM PF02541 gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1441 AFE_1442 AFE_1442 AFE_1442 1245191 1245316 + hypothetical protein identified by glimmer%3B putative gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1442 AFE_1443 AFE_1443 AFE_1443 1245451 1246041 + membrane protein%2C DedA family identified by similarity to GB:AAP17563.1 gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1443 AFE_1444 AFE_1444 rpsB rpsB 1246246 1246998 + ribosomal protein S2 identified by similarity to SP:P02351%3B match to protein family HMM PF00318%3B match to protein family HMM TIGR01011 gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1444 AFE_1445 AFE_1445 tsf tsf 1247026 1247904 + translation elongation factor Ts identified by similarity to SP:P02997%3B match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116 gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1445 AFE_1446 AFE_1446 pyrH pyrH 1247905 1248630 + uridylate kinase identified by similarity to GB:BAC07813.1%3B match to protein family HMM PF00696%3B match to protein family HMM TIGR02075 gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1446 AFE_1447 AFE_1447 frr frr 1248627 1249187 + ribosome recycling factor identified by similarity to SP:P16174%3B match to protein family HMM PF01765%3B match to protein family HMM TIGR00496 gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1447 AFE_1448 AFE_1448 uppS uppS 1249221 1249952 + undecaprenyl diphosphate synthase identified by match to protein family HMM PF01255%3B match to protein family HMM TIGR00055 gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1448 AFE_1449 AFE_1449 cdsA cdsA 1249934 1250749 + phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1449 AFE_1450 AFE_1450 dxr dxr 1250740 1251921 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase identified by similarity to SP:P45568%3B match to protein family HMM PF02670%3B match to protein family HMM PF08436%3B match to protein family HMM TIGR00243 gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1450 AFE_1451 AFE_1451 AFE_1451 1251937 1253295 + membrane-associated zinc metalloprotease%2C putative identified by similarity to SP:P37764%3B match to protein family HMM PF00595%3B match to protein family HMM PF02163%3B match to protein family HMM TIGR00054 gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1451 AFE_1452 AFE_1452 AFE_1452 1253292 1255637 + outer membrane protein%2C OMP85 family identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244%3B match to protein family HMM TIGR03303 gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1452 AFE_1453 AFE_1453 AFE_1453 1255655 1256191 + outer membrane protein%2C OmpH family identified by match to protein family HMM PF03938 gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1453 AFE_1454 AFE_1454 lpxD lpxD 1256193 1257254 + UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase identified by similarity to SP:P21645%3B match to protein family HMM PF00132%3B match to protein family HMM PF04613%3B match to protein family HMM TIGR01853 gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1454 AFE_1455 AFE_1455 fabZ fabZ 1257247 1257693 + beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ identified by match to protein family HMM PF07977%3B match to protein family HMM TIGR01750 gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1455 AFE_1456 AFE_1456 lpxA lpxA 1257690 1258472 + acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine acyltransferase identified by similarity to SP:P10440%3B match to protein family HMM PF00132%3B match to protein family HMM TIGR01852 gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1456 AFE_1457 AFE_1457 AFE_1457 1258469 1259410 + oxidoreductase%2C NAD-binding identified by match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1457 AFE_1458 AFE_1458 AFE_1458 1259456 1260565 + pleiotropic regulatory protein%2C putative identified by similarity to SP:P15263%3B match to protein family HMM PF01041%3B match to protein family HMM PF01212 gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1458 AFE_1459 AFE_1459 lpxB lpxB 1260570 1261697 + lipid A disaccharide synthase LpxB identified by similarity to GB:CAA60866.1%3B match to protein family HMM PF02684%3B match to protein family HMM TIGR00215 gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1459 AFE_1460 AFE_1460 rnhB rnhB 1261711 1262301 + ribonuclease HII identified by similarity to SP:P10442%3B match to protein family HMM PF01351 gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1460 AFE_1461 AFE_1461 dnaE dnaE 1262301 1265801 + DNA polymerase III%2C alpha subunit identified by similarity to SP:P10443%3B match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1461 AFE_1462 AFE_1462 accA accA 1265836 1266786 + acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513 gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1462 AFE_1463 AFE_1463 pyrC-2 pyrC-2 1268122 1269453 - dihydroorotase%2C multifunctional complex type identified by similarity to SP:P81006%3B match to protein family HMM PF01979%3B match to protein family HMM TIGR00857 gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1463 AFE_1464 AFE_1464 tilS tilS 1266764 1268158 + tRNA(Ile)-lysidine synthetase identified by similarity to SP:P52097%3B match to protein family HMM PF01171%3B match to protein family HMM PF01507%3B match to protein family HMM PF06508%3B match to protein family HMM PF09179%3B match to protein family HMM TIGR02432%3B match to protein family HMM TIGR02433 gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1464 AFE_1465 AFE_1465 dksA dksA 1269458 1269922 - dnaK suppressor protein identified by similarity to SP:P18274%3B match to protein family HMM PF01258%3B match to protein family HMM TIGR02420 gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1465 AFE_1466 AFE_1466 AFE_1466 1270089 1270853 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1466 AFE_1467 AFE_1467 AFE_1467 1270989 1271465 - transcriptional regulator%2C Fur family gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1467 AFE_1468 AFE_1468 AFE_1468 1271583 1272062 + antioxidant%2C AhpC/Tsa family identified by match to protein family HMM PF00578%3B match to protein family HMM PF08534 gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1468 AFE_1469 AFE_1469 AFE_1469 1272059 1273468 + PhoH family protein identified by match to protein family HMM PF02562 gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1469 AFE_1470 AFE_1470 AFE_1470 1275411 1275839 - hypothetical protein identified by glimmer%3B putative gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1470 AFE_1471 AFE_1471 speA speA 1273533 1275446 + arginine decarboxylase identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01273 gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1471 AFE_1472 AFE_1472 AFE_1472 1275874 1276557 - fumarylacetoacetate hydrolase family protein identified by match to protein family HMM PF01557 gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1472 AFE_1473 AFE_1473 AFE_1473 1276554 1276829 - hypothetical protein identified by glimmer%3B putative gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1473 AFE_1474 AFE_1474 AFE_1474 1276826 1277446 - glutathione S-transferase%2C putative identified by similarity to SP:P39100%3B match to protein family HMM PF02798 gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1474 AFE_1475 AFE_1475 AFE_1475 1277446 1277799 - hypothetical protein identified by glimmer%3B putative gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1475 AFE_1476 AFE_1476 AFE_1476 1277816 1278310 - conserved hypothetical protein identified by similarity to GB:AAA64729.1 gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1476 AFE_1477 AFE_1477 fixX fixX 1278329 1278616 - ferredoxin-like protein identified by similarity to SP:Q53207 gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1477 AFE_1478 AFE_1478 fixC fixC 1278613 1279911 - fixC protein identified by similarity to SP:P10331%3B match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM PF03486 gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1478 AFE_1479 AFE_1479 fixB fixB 1279928 1281022 - electron transfer flavoprotein%2C alpha subunit identified by similarity to SP:P26483%3B match to protein family HMM PF00766%3B match to protein family HMM PF01012 gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1479 AFE_1480 AFE_1480 fixA fixA 1281042 1281884 - electron transfer flavoprotein%2C beta subunit identified by similarity to SP:P53577%3B match to protein family HMM PF01012 gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1480 AFE_1481 AFE_1481 AFE_1481 1282056 1282154 + hypothetical protein identified by glimmer%3B putative gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1481 AFE_1482 AFE_1482 AFE_1482 1282389 1283000 + conserved domain protein identified by similarity to GB:AAN51174.1 gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1482 AFE_1483 AFE_1483 AFE_1483 1283011 1285275 + TonB-dependent receptor identified by match to protein family HMM PF00593 gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1483 AFE_1484 AFE_1484 AFE_1484 1285369 1286565 + conserved hypothetical protein identified by similarity to GB:AAM72768.1 gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1484 AFE_1485 AFE_1485 AFE_1485 1286578 1287231 + MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618 gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1485 AFE_1486 AFE_1486 AFE_1486 1287233 1287628 + biopolymer transport protein%2C ExbD/TolR family identified by match to protein family HMM PF02472 gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1486 AFE_1487 AFE_1487 AFE_1487 1287625 1288359 + TonB family protein identified by match to protein family HMM PF03544%3B match to protein family HMM TIGR01352 gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1487 AFE_1488 AFE_1488 AFE_1488 1288372 1288551 + hypothetical protein identified by glimmer%3B putative gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1488 AFE_1489 AFE_1489 AFE_1489 1288563 1289594 + iron compound ABC transporter%2C periplasmic iron-binding protein%2C putative identified by match to protein family HMM PF01497 gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1489 AFE_1490 AFE_1490 AFE_1490 1289591 1290574 + ABC transporter%2C permease protein%2C FecCD family identified by match to protein family HMM PF01032 gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1490 AFE_1491 AFE_1491 AFE_1491 1290571 1291362 + iron compound ABC transporter%2C ATP-binding protein%2C putative identified by similarity to SP:P15031%3B match to protein family HMM PF00005 gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1491 AFE_1492 AFE_1492 AFE_1492 1291388 1293523 + TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1492 AFE_1493 AFE_1493 AFE_1493 1293551 1294270 + molybdenum ABC transporter%2C periplasmic molybdate-binding protein%2C putative identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01256 gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1493 AFE_1494 AFE_1494 AFE_1494 1294290 1295324 + iron compound ABC transporter%2C periplasmic iron-binding protein%2C putative identified by match to protein family HMM PF01497 gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1494 AFE_1495 AFE_1495 AFE_1495 1295321 1296346 + ABC transporter%2C permease protein%2C FecCD family identified by match to protein family HMM PF01032 gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1495 AFE_1496 AFE_1496 AFE_1496 1296408 1297610 - cation diffusion facilitator family transporter identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1496 AFE_1497 AFE_1497 AFE_1497 1297694 1299022 - conserved hypothetical protein identified by match to protein family HMM PF03573 gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1497 AFE_1498 AFE_1498 AFE_1498 1299188 1300111 - ABC transporter%2C periplasmic substrate-binding protein%2C putative identified by match to protein family HMM PF01547 gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1498 AFE_1499 AFE_1499 AFE_1499 1300356 1302017 + ATPase%2C AAA family identified by match to protein family HMM PF00004 gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1499 AFE_1500 AFE_1500 AFE_1500 1302060 1302374 + hypothetical protein identified by glimmer%3B putative gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1500 AFE_1501 AFE_1501 AFE_1501 1302512 1302742 - conserved domain protein identified by similarity to GB:AAN66836.1%3B match to protein family HMM TIGR02605 gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1501 AFE_1502 AFE_1502 AFE_1502 1302812 1303594 - ankyrin repeat protein/rhodanese-like domain protein identified by match to protein family HMM PF00023%3B match to protein family HMM PF00581 gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1502 AFE_1503 AFE_1503 AFE_1503 1303591 1305207 - nitroreductase%2C putative gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1503 AFE_1504 AFE_1504 AFE_1504 1305272 1305604 - nifW protein%2C putative identified by similarity to SP:P26481%3B match to protein family HMM PF03206 gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1504 AFE_1505 AFE_1505 cysE-1 cysE-1 1305640 1306416 - serine O-acetyltransferase identified by similarity to SP:Q06750%3B match to protein family HMM PF00132%3B match to protein family HMM TIGR01172 gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1505 AFE_1506 AFE_1506 nifV nifV 1306432 1307592 - homocitrate synthase identified by similarity to SP:Q44290%3B match to protein family HMM PF00682%3B match to protein family HMM TIGR02660 gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1506 AFE_1507 AFE_1507 iscS-2 iscS-2 1307585 1308793 - cysteine desulfurase identified by similarity to SP:O54055%3B match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR03402 gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1507 AFE_1508 AFE_1508 AFE_1508 1308796 1309671 - nitrogen fixation protein nifU identified by similarity to SP:P05340%3B match to protein family HMM PF01106%3B match to protein family HMM PF01592%3B match to protein family HMM PF04324%3B match to protein family HMM TIGR02000 gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1508 AFE_1509 AFE_1509 AFE_1509 1309676 1310044 - iron-sulfur cluster assembly accessory protein identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049 gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1509 AFE_1510 AFE_1510 AFE_1510 1310302 1310895 - conserved hypothetical protein identified by similarity to GB:AAB66329.1 gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1510 AFE_1511 AFE_1511 AFE_1511 1310962 1311615 - nitrogen fixation protein NifQ identified by match to protein family HMM PF04891 gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1511 AFE_1512 AFE_1512 AFE_1512 1311637 1311945 - ferredoxin identified by similarity to SP:P46036%3B match to protein family HMM PF00037%3B match to protein family HMM TIGR02936 gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1512 AFE_1513 AFE_1513 AFE_1513 1311950 1312213 - conserved hypothetical protein identified by similarity to GB:AAK51500.1%3B match to protein family HMM PF05082 gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1513 AFE_1514 AFE_1514 AFE_1514 1312271 1312738 - conserved hypothetical protein identified by similarity to GB:BAC47013.1%3B match to protein family HMM PF03270%3B match to protein family HMM TIGR02935 gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1514 AFE_1515 AFE_1515 nifX nifX 1312731 1313147 - nitrogen fixation protein NifX identified by similarity to SP:P19078%3B match to protein family HMM PF02579%3B match to protein family HMM TIGR02663 gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1515 AFE_1516 AFE_1516 nifN nifN 1313200 1314561 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifN identified by match to protein family HMM PF00148%3B match to protein family HMM TIGR01285 gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1516 AFE_1517 AFE_1517 nifE nifE 1314558 1315949 - nitrogenase MoFe cofactor biosynthesis protein NifE identified by match to protein family HMM PF00148%3B match to protein family HMM TIGR01283 gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1517 AFE_1518 AFE_1518 AFE_1518 1315968 1316312 - ferredoxin%2C putative identified by match to protein family HMM PF00111 gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1518 AFE_1519 AFE_1519 AFE_1519 1316337 1316681 - ferredoxin identified by similarity to SP:P37097%3B match to protein family HMM PF00111 gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1519 AFE_1520 AFE_1520 nifK nifK 1316743 1318302 - nitrogenase molybdenum-iron protein%2C beta subunit identified by match to protein family HMM PF00148%3B match to protein family HMM TIGR01286 gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1520 AFE_1521 AFE_1521 nifD nifD 1318381 1319856 - nitrogenase molybdenum-iron protein%2C alpha subunit identified by similarity to SP:P06121%3B match to protein family HMM PF00148%3B match to protein family HMM TIGR01282%3B match to protein family HMM TIGR01862 gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1521 AFE_1522 AFE_1522 nifH nifH 1319920 1320810 - nitrogenase iron protein identified by similarity to SP:P00459%3B match to protein family HMM PF00142%3B match to protein family HMM TIGR01287 gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1522 AFE_1523 AFE_1523 AFE_1523 1321269 1321655 + response regulator gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1523 AFE_1524 AFE_1524 draT draT 1321674 1322501 + NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase identified by similarity to SP:P14299 gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1524 AFE_1525 AFE_1525 draG draG 1322511 1323899 + ADP-ribosyl-[dinitrogen reductase] hydrolase identified by match to protein family HMM PF03747%3B match to protein family HMM TIGR01616%3B match to protein family HMM TIGR02662 gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1525 AFE_1526 AFE_1526 AFE_1526 1325559 1325702 - hypothetical protein identified by glimmer%3B putative gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1526 AFE_1527 AFE_1527 nifA nifA 1323925 1325562 + Nif-specific regulatory protein identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01817 gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1527 AFE_1528 AFE_1528 AFE_1528 1325832 1325933 + hypothetical protein identified by glimmer%3B putative gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1528 AFE_1529 AFE_1529 nifB nifB 1325956 1327455 + nitrogenase cofactor biosynthesis protein NifB identified by match to protein family HMM PF02579%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR01290 gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1529 AFE_1530 AFE_1530 AFE_1530 1327506 1327724 + ferredoxin identified by similarity to SP:P00207%3B match to protein family HMM PF00037 gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1530 AFE_1531 AFE_1531 AFE_1531 1327734 1328069 + iron-sulfur cluster assembly accessory protein identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049 gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1531 AFE_1532 AFE_1532 AFE_1532 1328110 1328340 + hypothetical protein identified by glimmer%3B putative gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1532 AFE_1533 AFE_1533 AFE_1533 1328337 1328846 + conserved hypothetical protein identified by similarity to SP:P23177 gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1533 AFE_1534 AFE_1534 AFE_1534 1328839 1329630 + leucine rich repeat protein identified by match to protein family HMM PF01816 gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1534 AFE_1535 AFE_1535 AFE_1535 1329627 1329920 + NifZ domain protein identified by match to protein family HMM PF04319 gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1535 AFE_1536 AFE_1536 AFE_1536 1329920 1330171 + NifZ domain protein gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1536 AFE_1537 AFE_1537 iscS-1 iscS-1 1330168 1331349 + cysteine desulfurase identified by similarity to SP:O54055%3B match to protein family HMM PF00266 gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1537 AFE_1538 AFE_1538 AFE_1538 1331365 1331574 + nitrogen fixation protein%2C putative identified by similarity to SP:P09427%3B match to protein family HMM PF06988%3B match to protein family HMM TIGR02934 gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1538 AFE_1539 AFE_1539 AFE_1539 1331579 1331851 + conserved hypothetical protein identified by similarity to GB:AAA64714.1 gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1539 AFE_1540 AFE_1540 AFE_1540 1331848 1332990 + aminotransferase%2C DegT/DnrJ/EryC1/StrS family identified by match to protein family HMM PF01041 gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1540 AFE_1541 AFE_1541 AFE_1541 1333032 1333337 + ferredoxin%2C putative identified by similarity to SP:P44428%3B match to protein family HMM PF00111 gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1541 AFE_1542 AFE_1542 AFE_1542 1333348 1333572 + hypothetical protein identified by glimmer%3B putative gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1542 AFE_1543 AFE_1543 AFE_1543 1333585 1334412 + conserved hypothetical protein identified by similarity to GB:AAF61911.1 gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1543 AFE_1544 AFE_1544 AFE_1544 1334461 1335315 - pyrophosphorylase%2C putative identified by similarity to SP:P59245%3B match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR01334 gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1544 AFE_1545 AFE_1545 AFE_1545 1335439 1335645 - molybdenum-pterin binding protein identified by match to protein family HMM PF03459%3B match to protein family HMM TIGR00638 gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1545 AFE_1546 AFE_1546 AFE_1546 1335712 1337139 - succinate-semialdehyde dehydrogenase%2C putative identified by similarity to SP:P25526%3B match to protein family HMM PF00171 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1546 AFE_1547 AFE_1547 AFE_1547 1337727 1339145 - membrane protein%2C putative identified by match to protein family HMM PF07690 gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1547 AFE_1548 AFE_1548 AFE_1548 1337338 1337730 + heme-binding protein%2C putative identified by similarity to SP:Q9CC59%3B match to protein family HMM PF01152 gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1548 AFE_1549 AFE_1549 AFE_1549 1339329 1339901 + conserved hypothetical protein identified by similarity to GB:AAM36227.1 gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1549 AFE_1550 AFE_1550 AFE_1550 1339898 1340809 + carbohydrate kinase%2C PfkB family identified by match to protein family HMM PF00294 gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1550 AFE_1551 AFE_1551 AFE_1551 1340802 1342946 + sucrose phosphate synthase identified by match to protein family HMM PF00534%3B match to protein family HMM PF05116%3B match to protein family HMM PF08282%3B match to protein family HMM TIGR01484%3B match to protein family HMM TIGR02471%3B match to protein family HMM TIGR02472 gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1551 AFE_1552 AFE_1552 AFE_1552 1342876 1345320 + sucrose synthase%2C putative identified by match to protein family HMM PF00534%3B match to protein family HMM PF00862 gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1552 AFE_1553 AFE_1553 ogt-2 ogt-2 1345465 1345989 - methylated-DNA--protein-cysteine methyltransferase identified by similarity to SP:P09168%3B match to protein family HMM PF01035%3B match to protein family HMM PF02870%3B match to protein family HMM TIGR00589 gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1553 AFE_1554 AFE_1554 AFE_1554 1346142 1346795 - membrane protein%2C putative identified by match to protein family HMM PF02656 gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1554 AFE_1555 AFE_1555 AFE_1555 1346954 1347030 + tRNA-Val tRNA gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1555 AFE_1556 AFE_1556 AFE_1556 1347049 1348044 - site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1556 AFE_1557 AFE_1557 AFE_1557 1348643 1348876 - conserved domain protein identified by similarity to GB:CAD29689.1 gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1557 AFE_1558 AFE_1558 AFE_1558 1348464 1348751 + hypothetical protein identified by glimmer%3B putative gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1558 AFE_1559 AFE_1559 AFE_1559 1349087 1349365 + hypothetical protein identified by glimmer%3B putative gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1559 AFE_1560 AFE_1560 AFE_1560 1349368 1349706 + conserved hypothetical protein identified by similarity to SP:Q9CLT7 gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1560 AFE_1561 AFE_1561 AFE_1561 1349838 1350692 - hypothetical protein identified by glimmer%3B putative gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1561 AFE_1562 AFE_1562 AFE_1562 1350694 1351416 - hypothetical protein identified by glimmer%3B putative gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1562 AFE_1563 AFE_1563 AFE_1563 1351413 1351907 - repressor protein CI homolog gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1563 AFE_1564 AFE_1564 AFE_1564 1351989 1352213 + prophage Afe02%2C transcriptional regulator%2C Cro family gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1564 AFE_1565 AFE_1565 AFE_1565 1352265 1353326 + hypothetical protein identified by glimmer%3B putative gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1565 AFE_1566 AFE_1566 AFE_1566 1353337 1354197 + DNA replication protein DnaC%2C putative identified by similarity to SP:P07905%3B match to protein family HMM PF01695 gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1566 AFE_1567 AFE_1567 AFE_1567 1354194 1355390 + hypothetical protein identified by glimmer%3B putative gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1567 AFE_1568 AFE_1568 AFE_1568 1355387 1356277 + methyltransferase%2C putative identified by match to protein family HMM PF02086 gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1568 AFE_1569 AFE_1569 ssb-2 ssb-2 1356340 1356834 + single-strand binding protein identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1569 AFE_1570 AFE_1570 AFE_1570 1356990 1357133 + hypothetical protein identified by glimmer%3B putative gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1570 AFE_1571 AFE_1571 AFE_1571 1357636 1357788 + hypothetical protein identified by glimmer%3B putative gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1571 AFE_1572 AFE_1572 AFE_1572 1357799 1364395 + conserved hypothetical protein identified by similarity to GB:AAM41383.1 gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1572 AFE_1573 AFE_1573 AFE_1573 1364395 1364712 + hypothetical protein identified by glimmer%3B putative gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1573 AFE_1574 AFE_1574 AFE_1574 1364998 1365981 - hypothetical protein identified by glimmer%3B putative gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1574 AFE_1575 AFE_1575 AFE_1575 1366160 1368442 - type I restriction-modification system%2C R subunit identified by similarity to SP:P08956%3B match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM PF08463 gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1575 AFE_1576 AFE_1576 AFE_1576 1368452 1369651 - type I restriction-modification system%2C S subunit identified by match to protein family HMM PF01420 gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1576 AFE_1577 AFE_1577 AFE_1577 1369648 1371102 - type I restriction-modification system%2C M subunit identified by match to protein family HMM PF02384 gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1577 AFE_1578 AFE_1578 AFE_1578 1371201 1371575 - PIN domain protein identified by match to protein family HMM PF01850 gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1578 AFE_1579 AFE_1579 AFE_1579 1371572 1371769 - conserved hypothetical protein identified by similarity to GB:AAK52344.1 gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1579 AFE_1580 AFE_1580 AFE_1580 1372085 1372264 - hypothetical protein identified by glimmer%3B putative gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1580 AFE_1581 AFE_1581 AFE_1581 1371912 1372154 + hypothetical protein identified by glimmer%3B putative gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1581 AFE_1582 AFE_1582 AFE_1582 1372599 1373273 + hypothetical protein identified by glimmer%3B putative gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1582 AFE_1583 AFE_1583 AFE_1583 1373270 1373593 + integration host factor%2C alpha subunit%2C putative identified by similarity to SP:P23302%3B match to protein family HMM PF00216 gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1583 AFE_1584 AFE_1584 AFE_1584 1373660 1373935 + DNA-binding protein HU family protein identified by match to protein family HMM PF00216 gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1584 AFE_1585 AFE_1585 AFE_1585 1373947 1374300 + hypothetical protein identified by glimmer%3B putative gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1585 AFE_1586 AFE_1586 AFE_1586 1374309 1374530 + DNA-binding protein%2C HU family identified by match to protein family HMM PF00216 gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1586 AFE_1587 AFE_1587 AFE_1587 1374531 1374755 + hypothetical protein identified by glimmer%3B putative gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1587 AFE_1588 AFE_1588 AFE_1588 1374953 1375084 + hypothetical protein identified by glimmer%3B putative gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1588 AFE_1589 AFE_1589 dinJ dinJ 1375254 1375523 - DNA-damage-inducible protein J identified by similarity to SP:Q47150%3B match to protein family HMM PF04221%3B match to protein family HMM TIGR02384 gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1589 AFE_1590 AFE_1590 AFE_1590 1375548 1376444 - conserved hypothetical protein identified by similarity to GB:AAO08903.1 gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1590 AFE_1591 AFE_1591 AFE_1591 1376706 1377266 + conserved domain protein identified by similarity to PIR:AG0097 gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1591 AFE_1592 AFE_1592 AFE_1592 1377352 1378040 + conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAO58003.1 pseudogene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1592 AFE_1593 AFE_1593 AFE_1593 1378202 1378696 - transposase%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated pseudogene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1593 AFE_1594 AFE_1594 AFE_1594 1378104 1378259 + hypothetical protein identified by glimmer%3B putative gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1594 AFE_1595 AFE_1595 AFE_1595 1378759 1379517 - hypothetical protein identified by glimmer%3B putative gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1595 AFE_1596 AFE_1596 AFE_1596 1379771 1379998 - hypothetical protein identified by glimmer%3B putative gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1596 AFE_1597 AFE_1597 AFE_1597 1379947 1380189 - transposase%2C degenerate gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1597 AFE_1598 AFE_1598 AFE_1598 1380283 1380450 - hypothetical protein identified by glimmer%3B putative gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1598 AFE_1599 AFE_1599 AFE_1599 1380644 1380739 - hypothetical protein identified by glimmer%3B putative gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1599 AFE_1600 AFE_1600 AFE_1600 1380895 1381092 - hypothetical protein identified by glimmer%3B putative gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1600 AFE_1601 AFE_1601 AFE_1601 1381329 1381520 - hypothetical protein identified by glimmer%3B putative gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1601 AFE_1602 AFE_1602 AFE_1602 1381555 1381878 - transposase%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated pseudogene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1602 AFE_1603 AFE_1603 AFE_1603 1382087 1383223 - ABC transporter%2C permease protein%2C putative identified by similarity to SP:P75774%3B match to protein family HMM PF01061 gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1603 AFE_1604 AFE_1604 AFE_1604 1383227 1384360 - ABC transporter%2C permease protein%2C putative identified by similarity to SP:P75775%3B match to protein family HMM PF01061 gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1604 AFE_1605 AFE_1605 AFE_1605 1384357 1385286 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1605 AFE_1606 AFE_1606 AFE_1606 1385300 1386247 - ABC transporter%2C ATP-binding protein identified by similarity to SP:P75776%3B match to protein family HMM PF00005 gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1606 AFE_1607 AFE_1607 AFE_1607 1386247 1387242 - secretion protein%2C HlyD family identified by match to protein family HMM PF00529 gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1607 AFE_1608 AFE_1608 AFE_1608 1387850 1388765 - ISAfe7%2C transposase orfB%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1608 AFE_1609 AFE_1609 AFE_1609 1387656 1387853 + hypothetical protein identified by glimmer%3B putative gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1609 AFE_1610 AFE_1610 AFE_1610 1388762 1389091 - ISAfe7%2C transposase orfA identified by match to protein family HMM PF01527 gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1610 AFE_1611 AFE_1611 AFE_1611 1389142 1390152 - transposase%2C putative identified by match to protein family HMM PF01609%3B match to protein family HMM PF02178 gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1611 AFE_1612 AFE_1612 AFE_1612 1390245 1390361 - hypothetical protein identified by glimmer%3B putative gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1612 AFE_1613 AFE_1613 AFE_1613 1390753 1391325 - conserved hypothetical protein identified by similarity to GB:AAN62151.1 gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1613 AFE_1614 AFE_1614 AFE_1614 1391326 1391790 - excisionase domain protein identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR01764 gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1614 AFE_1615 AFE_1615 AFE_1615 1392226 1396575 + DNA primase TraC identified by similarity to SP:P27189%3B match to protein family HMM PF08401 gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1615 AFE_1616 AFE_1616 AFE_1616 1396634 1397830 + hypothetical protein identified by glimmer%3B putative gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1616 AFE_1617 AFE_1617 AFE_1617 1397827 1398105 + hypothetical protein identified by glimmer%3B putative gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1617 AFE_1618 AFE_1618 AFE_1618 1398116 1398505 + hypothetical protein identified by glimmer%3B putative gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1618 AFE_1619 AFE_1619 AFE_1619 1398528 1399487 + hypothetical protein identified by glimmer%3B putative gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1619 AFE_1620 AFE_1620 AFE_1620 1399551 1400330 + hypothetical protein identified by glimmer%3B putative gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1620 AFE_1621 AFE_1621 AFE_1621 1400330 1401880 + conserved hypothetical protein identified by similarity to GB:CAD61135.1 gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1621 AFE_1622 AFE_1622 AFE_1622 1401941 1402057 + hypothetical protein identified by glimmer%3B putative gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1622 AFE_1623 AFE_1623 AFE_1623 1402091 1402267 + hypothetical protein identified by glimmer%3B putative gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1623 AFE_1624 AFE_1624 AFE_1624 1402741 1402920 + hypothetical protein identified by glimmer%3B putative gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1624 AFE_1625 AFE_1625 AFE_1625 1403110 1403754 + hypothetical protein identified by glimmer%3B putative gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1625 AFE_1626 AFE_1626 AFE_1626 1404035 1404139 + hypothetical protein identified by glimmer%3B putative gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1626 AFE_1627 AFE_1627 AFE_1627 1404171 1404365 - hypothetical protein identified by glimmer%3B putative gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1627 AFE_1628 AFE_1628 AFE_1628 1404393 1404533 + hypothetical protein identified by glimmer%3B putative gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1628 AFE_1629 AFE_1629 AFE_1629 1404550 1404741 + hypothetical protein identified by glimmer%3B putative gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1629 AFE_1630 AFE_1630 AFE_1630 1404813 1405109 + conserved hypothetical protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to PIR:H82648 pseudogene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1630 AFE_1631 AFE_1631 AFE_1631 1405113 1405412 + conserved hypothetical protein identified by similarity to GB:CAD17227.1%3B match to protein family HMM TIGR02684 gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1631 AFE_1632 AFE_1632 AFE_1632 1405747 1406259 - hypothetical protein identified by glimmer%3B putative gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1632 AFE_1633 AFE_1633 AFE_1633 1405521 1405826 + hypothetical protein identified by glimmer%3B putative gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1633 AFE_1634 AFE_1634 trbB trbB 1406427 1407395 + P-type conjugative transfer protein TrbB identified by similarity to SP:P54907%3B match to protein family HMM PF00437%3B match to protein family HMM TIGR02782 gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1634 AFE_1635 AFE_1635 AFE_1635 1407792 1408583 - membrane protein%2C putative gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1635 AFE_1636 AFE_1636 AFE_1636 1408788 1409174 + hypothetical protein identified by glimmer%3B putative gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1636 AFE_1637 AFE_1637 AFE_1637 1409178 1409555 + conjugal transfer protein TrbD%2C putative gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1637 AFE_1638 AFE_1638 AFE_1638 1409555 1412077 + conjugal transfer protein trbE%2C putative identified by similarity to SP:P05353%3B match to protein family HMM PF03135 gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1638 AFE_1639 AFE_1639 AFE_1639 1412074 1412337 + hypothetical protein identified by glimmer%3B putative gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1639 AFE_1640 AFE_1640 AFE_1640 1412420 1413160 + conjugal transfer protein trbJ%2C putative identified by similarity to SP:P55400%3B match to protein family HMM TIGR02780 gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1640 AFE_1641 AFE_1641 AFE_1641 1413172 1413426 + lipoprotein%2C putative gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1641 AFE_1642 AFE_1642 AFE_1642 1413442 1415211 + conjugal transfer protein trbL%2C putative identified by similarity to GB:AAN33564.1%3B match to protein family HMM TIGR02783 gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1642 AFE_1643 AFE_1643 AFE_1643 1415204 1415677 + hypothetical protein identified by glimmer%3B putative gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1643 AFE_1644 AFE_1644 AFE_1644 1415851 1416318 - conserved hypothetical protein identified by similarity to GB:AAN68922.1 gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1644 AFE_1645 AFE_1645 AFE_1645 1416346 1416552 - hypothetical protein identified by glimmer%3B putative gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1645 AFE_1646 AFE_1646 AFE_1646 1416685 1418169 - serine protease%2C DO/DeqQ family identified by similarity to GB:AAK01318.1%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037 gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1646 AFE_1647 AFE_1647 AFE_1647 1418220 1418483 - hypothetical protein identified by glimmer%3B putative gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1647 AFE_1648 AFE_1648 AFE_1648 1418670 1419116 - heat shock protein%2C Hsp20 family identified by similarity to SP:Q06823%3B match to protein family HMM PF00011 gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1648 AFE_1649 AFE_1649 AFE_1649 1419451 1420206 - conserved domain protein identified by similarity to PIR:T51129 gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1649 AFE_1650 AFE_1650 AFE_1650 1419340 1419477 + hypothetical protein identified by glimmer%3B putative gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1650 AFE_1651 AFE_1651 AFE_1651 1420394 1421275 + 3-hydroxyisobutyrate dehydrogenase family protein identified by similarity to SP:O34969%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807 gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1651 AFE_1652 AFE_1652 AFE_1652 1421305 1423572 + oxidoreductase alpha (molybdopterin) subunit identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM TIGR01701 gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1652 AFE_1653 AFE_1653 AFE_1653 1423562 1423831 + hypothetical protein identified by glimmer%3B putative gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1653 AFE_1654 AFE_1654 fdhD-1 fdhD-1 1423810 1424658 + formate dehydrogenase family accessory protein FdhD identified by match to protein family HMM PF02634%3B match to protein family HMM TIGR00129 gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1654 AFE_1655 AFE_1655 AFE_1655 1424667 1425359 - ISAfe6%2C transposase identified by similarity to GB:AAK61303.1 gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1655 AFE_1656 AFE_1656 AFE_1656 1425617 1426645 - ferredoxin/oxidoreductase%2C FAD/NAD-binding identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1656 AFE_1657 AFE_1657 AFE_1657 1426704 1428374 - hybrid cluster protein identified by similarity to SP:P75825%3B match to protein family HMM PF03063%3B match to protein family HMM TIGR01703 gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1657 AFE_1658 AFE_1658 AFE_1658 1428748 1429416 + transcriptional regulator%2C Crp/Fnr family identified by match to protein family HMM PF00027%3B match to protein family HMM PF00325 gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1658 AFE_1659 AFE_1659 AFE_1659 1429682 1430710 - hypothetical protein identified by glimmer%3B putative gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1659 AFE_1660 AFE_1660 AFE_1660 1429450 1429716 + hypothetical protein identified by glimmer%3B putative gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1660 AFE_1661 AFE_1661 AFE_1661 1430837 1433314 - conserved hypothetical protein identified by similarity to GB:AAM37026.1 gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1661 AFE_1662 AFE_1662 AFE_1662 1433317 1434957 - NADH dehydrogenase%2C putative identified by match to protein family HMM PF00361 gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1662 AFE_1663 AFE_1663 glcF glcF 1435261 1436511 - glycolate oxidase%2C iron-sulfur subunit identified by similarity to SP:P52074%3B match to protein family HMM PF00037%3B match to protein family HMM PF02754 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1663 AFE_1664 AFE_1664 glcE glcE 1436521 1437633 - glycolate oxidase%2C subunit GlcE identified by similarity to SP:P52073%3B match to protein family HMM PF01565 gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1664 AFE_1665 AFE_1665 glcD glcD 1437587 1439053 - glycolate oxidase%2C subunit GlcD identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913 gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1665 AFE_1666 AFE_1666 AFE_1666 1439068 1440405 - conserved hypothetical protein identified by similarity to PIR:AG2237 gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1666 AFE_1667 AFE_1667 AFE_1667 1440418 1442586 - transketolase pyridine binding domain protein identified by match to protein family HMM PF02779 gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1667 AFE_1668 AFE_1668 AFE_1668 1442735 1443514 + transcriptional regulator%2C IclR family identified by match to protein family HMM PF01614%3B match to protein family HMM PF09339 gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1668 AFE_1669 AFE_1669 AFE_1669 1443814 1444083 + hypothetical protein identified by glimmer%3B putative gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1669 AFE_1670 AFE_1670 AFE_1670 1444150 1445028 + conserved hypothetical protein identified by similarity to PIR:AG2067 gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1670 AFE_1671 AFE_1671 AFE_1671 1445085 1445645 + hypothetical protein identified by glimmer%3B putative gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1671 AFE_1672 AFE_1672 AFE_1672 1445713 1446750 + dihydroorotase%2C homodimeric type identified by similarity to SP:P05020%3B match to protein family HMM PF01979%3B match to protein family HMM TIGR00856 gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1672 AFE_1673 AFE_1673 ilvD-1 ilvD-1 1446832 1448505 + dihydroxy-acid dehydratase identified by match to protein family HMM PF00920%3B match to protein family HMM TIGR00110 gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1673 AFE_1674 AFE_1674 AFE_1674 1448509 1449495 - Sua5/YciO/YrdC family protein identified by match to protein family HMM PF01300%3B match to protein family HMM PF03481%3B match to protein family HMM TIGR00057 gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1674 AFE_1675 AFE_1675 bioD-1 bioD-1 1449690 1450445 - dethiobiotin synthetase identified by match to protein family HMM TIGR00347 gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1675 AFE_1676 AFE_1676 AFE_1676 1450475 1451656 - fructose-bisphosphate aldolase class II family protein identified by match to protein family HMM PF01116 gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1676 AFE_1677 AFE_1677 AFE_1677 1451782 1454133 - von Willebrand factor type A domain protein identified by match to protein family HMM PF00092 gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1677 AFE_1678 AFE_1678 p30 p30 1454149 1454952 - p30 protein identified by similarity to GB:BAA76361.1%3B match to protein family HMM PF07728%3B match to protein family HMM PF08406 gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1678 AFE_1679 AFE_1679 AFE_1679 1454983 1455237 - conserved hypothetical protein identified by similarity to GB:CAB45259.1 gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1679 AFE_1680 AFE_1680 AFE_1680 1455228 1455863 - conserved hypothetical protein identified by similarity to GB:AAB36936.1%3B match to protein family HMM PF01656 gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1680 AFE_1681 AFE_1681 AFE_1681 1455900 1456178 - conserved hypothetical protein identified by similarity to GB:CAE21373.1 gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1681 AFE_1682 AFE_1682 bfr bfr 1456175 1456618 - bacterioferritin identified by match to protein family HMM PF00210 gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1682 AFE_1683 AFE_1683 cscE cscE 1456632 1456970 - carboxysome shell peptide identified by similarity to GB:AAD30516.1%3B match to protein family HMM PF00936 gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1683 AFE_1684 AFE_1684 cscD cscD 1457016 1457318 - carboxysome shell peptide identified by similarity to GB:AAD30515.1%3B match to protein family HMM PF00936 gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1684 AFE_1685 AFE_1685 cscC cscC 1457357 1457653 - carboxysome shell peptide identified by similarity to GB:AAD30514.1%3B match to protein family HMM PF00936 gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1685 AFE_1686 AFE_1686 cscB cscB 1457685 1457951 - carboxysome peptide B identified by similarity to GB:AAD30513.1%3B match to protein family HMM PF03319%3B match to protein family HMM TIGR02704 gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1686 AFE_1687 AFE_1687 cscA cscA 1457962 1458210 - carboxysome peptide A identified by similarity to GB:AAD30512.1%3B match to protein family HMM PF03319%3B match to protein family HMM TIGR02703 gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1687 AFE_1688 AFE_1688 cab2 cab2 1458207 1459808 - carboxysome shell carbonic anhydrase identified by similarity to GB:AAD30511.1%3B match to protein family HMM PF08936%3B match to protein family HMM TIGR02701 gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1688 AFE_1689 AFE_1689 AFE_1689 1459864 1462152 - Tat (twin-arginine translocation) pathway signal sequence domain protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1689 AFE_1690 AFE_1690 cbbS-2 cbbS-2 1462235 1462567 - ribulose bisphosphate carboxylase%2C small subunit identified by match to protein family HMM PF00101 gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1690 AFE_1691 AFE_1691 cbbL-2 cbbL-2 1462659 1464080 - ribulose bisphosphate carboxylase%2C large subunit identified by match to protein family HMM PF00016%3B match to protein family HMM PF02788 gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1691 AFE_1692 AFE_1692 cbbR cbbR 1464153 1465151 + rubisco operon transcriptional regulator identified by similarity to SP:Q06610%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1692 AFE_1693 AFE_1693 AFE_1693 1465595 1466452 + conserved hypothetical protein identified by similarity to GB:CAB88947.1 gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1693 AFE_1694 AFE_1694 AFE_1694 1466762 1467430 + conjugal transfer protein identified by similarity to SP:P54914 gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1694 AFE_1695 AFE_1695 AFE_1695 1467443 1468588 + conjugal transfer protein identified by similarity to SP:P54915%3B match to protein family HMM PF03524 gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1695 AFE_1696 AFE_1696 AFE_1696 1468590 1469591 + conjugal transfer protein%2C putative gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1696 AFE_1697 AFE_1697 AFE_1697 1469594 1471394 + conjugal transfer protein%2C putative%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P54917 pseudogene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1697 AFE_1698 AFE_1698 AFE_1698 1471391 1472062 + conjugal transfer -like protein identified by match to protein family HMM PF01464 gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1698 AFE_1699 AFE_1699 AFE_1699 1472073 1474577 + TraG/TraD family protein identified by match to protein family HMM PF02534 gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1699 AFE_1700 AFE_1700 AFE_1700 1474687 1474881 + conserved hypothetical protein identified by similarity to PIR:E85625 gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1700 AFE_1701 AFE_1701 AFE_1701 1474883 1475178 + plasmid stabilization protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to PIR:A82602 pseudogene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1701 AFE_1702 AFE_1702 AFE_1702 1475207 1475395 - hypothetical protein identified by glimmer%3B putative gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1702 AFE_1703 AFE_1703 AFE_1703 1475398 1475625 - hypothetical protein identified by glimmer%3B putative gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1703 AFE_1704 AFE_1704 AFE_1704 1475603 1475839 - hypothetical protein identified by glimmer%3B putative gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1704 AFE_1705 AFE_1705 AFE_1705 1475927 1476058 + hypothetical protein identified by glimmer%3B putative gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1705 AFE_1706 AFE_1706 AFE_1706 1479769 1481406 - ISAfe4%2C transposase orf3 identified by match to protein family HMM PF03050 gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1706 AFE_1707 AFE_1707 AFE_1707 1476740 1479913 + sensory box-containing diguanylate cyclase%2C putative identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM PF08447%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1707 AFE_1708 AFE_1708 AFE_1708 1481456 1481803 - ISAfe4%2C transposase orf2 identified by match to protein family HMM PF05717 gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1708 AFE_1709 AFE_1709 AFE_1709 1481794 1482126 - ISAfe4%2C tranposase orf1 Assignment based on BLAST search at the ISFinder database%2C and proximity to other transposase ORFs. gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1709 AFE_1710 AFE_1710 AFE_1710 1482240 1482662 + hypothetical protein identified by glimmer%3B putative gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1710 AFE_1711 AFE_1711 AFE_1711 1482799 1483356 - hypothetical protein identified by glimmer%3B putative gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1711 AFE_1712 AFE_1712 AFE_1712 1483680 1485677 - diguanylate cyclase%2C putative identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1712 AFE_1713 AFE_1713 AFE_1713 1486371 1486499 - hypothetical protein identified by glimmer%3B putative gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1713 AFE_1714 AFE_1714 AFE_1714 1486744 1486932 - hypothetical protein identified by glimmer%3B putative gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1714 AFE_1715 AFE_1715 AFE_1715 1486885 1487013 + hypothetical protein identified by glimmer%3B putative gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1715 AFE_1716 AFE_1716 AFE_1716 1487170 1488069 - GTP-binding protein gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1716 AFE_1717 AFE_1717 AFE_1717 1488397 1488654 - hypothetical protein identified by glimmer%3B putative gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1717 AFE_1718 AFE_1718 AFE_1718 1488207 1488497 + hypothetical protein identified by glimmer%3B putative gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1718 AFE_1719 AFE_1719 AFE_1719 1488738 1489991 - parB family protein identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180 gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1719 AFE_1720 AFE_1720 AFE_1720 1489993 1490763 - parA family protein identified by match to protein family HMM PF01656 gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1720 AFE_1721 AFE_1721 AFE_1721 1490742 1491182 - hypothetical protein identified by glimmer%3B putative gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1721 AFE_1722 AFE_1722 AFE_1722 1491312 1491680 + hypothetical protein identified by glimmer%3B putative gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1722 AFE_1723 AFE_1723 AFE_1723 1491691 1492689 - oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1723 AFE_1724 AFE_1724 AFE_1724 1492849 1492941 + hypothetical protein identified by glimmer%3B putative gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1724 AFE_1725 AFE_1725 AFE_1725 1493950 1496079 + sensory box-containing diguanylate cyclase%2C putative identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF08448%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1725 AFE_1726 AFE_1726 AFE_1726 1496206 1496751 - conjugal transfer protein TraF%2C putative identified by similarity to SP:Q44350 gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1726 AFE_1727 AFE_1727 AFE_1727 1496723 1497163 + hypothetical protein identified by glimmer%3B putative gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1727 AFE_1728 AFE_1728 AFE_1728 1497144 1497485 + conserved hypothetical protein identified by similarity to GB:CAC46678.1 gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1728 AFE_1729 AFE_1729 AFE_1729 1497493 1497624 - hypothetical protein identified by glimmer%3B putative gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1729 AFE_1730 AFE_1730 AFE_1730 1497668 1497931 - hypothetical protein identified by glimmer%3B putative gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1730 AFE_1731 AFE_1731 AFE_1731 1498010 1499350 - conjugal transfer protein TraB%2C putative identified by similarity to SP:Q44351 gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1731 AFE_1732 AFE_1732 AFE_1732 1499609 1499839 + hypothetical protein identified by glimmer%3B putative gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1732 AFE_1733 AFE_1733 AFE_1733 1499851 1500294 + conserved hypothetical protein identified by similarity to PIR:E85734%3B match to protein family HMM PF03681 gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1733 AFE_1734 AFE_1734 AFE_1734 1500400 1500696 + conserved hypothetical protein identified by similarity to PIR:G82661%3B match to protein family HMM TIGR02684 gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1734 AFE_1735 AFE_1735 AFE_1735 1500938 1501168 - hypothetical protein identified by glimmer%3B putative gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1735 AFE_1736 AFE_1736 AFE_1736 1501146 1501406 - hypothetical protein identified by glimmer%3B putative gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1736 AFE_1737 AFE_1737 AFE_1737 1501387 1501536 - hypothetical protein identified by glimmer%3B putative gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1737 AFE_1738 AFE_1738 topB topB 1501586 1503685 - DNA topoisomerase III identified by match to protein family HMM PF01131%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01056 gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1738 AFE_1739 AFE_1739 AFE_1739 1503724 1503915 - hypothetical protein identified by glimmer%3B putative gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1739 AFE_1740 AFE_1740 AFE_1740 1504835 1506211 - phospholipase D family protein identified by match to protein family HMM PF00614 gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1740 AFE_1741 AFE_1741 AFE_1741 1506248 1508077 - sigma-54 dependent transcriptional regulator identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954 gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1741 AFE_1742 AFE_1742 AFE_1742 1508468 1509988 + aldehyde dehydrogenase (NAD) family protein identified by match to protein family HMM PF00171 gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1742 AFE_1743 AFE_1743 AFE_1743 1510065 1510436 + conserved hypothetical protein identified by similarity to PIR:H83734 gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1743 AFE_1744 AFE_1744 AFE_1744 1510884 1510976 - hypothetical protein identified by glimmer%3B putative gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1744 AFE_1745 AFE_1745 AFE_1745 1511065 1511598 - conserved hypothetical protein identified by similarity to GB:CAE32968.1 gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1745 AFE_1746 AFE_1746 AFE_1746 1511742 1511879 - hypothetical protein identified by glimmer%3B putative gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1746 AFE_1747 AFE_1747 AFE_1747 1511831 1512264 - transcriptional regulator%2C putative%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to GB:BAB47691.1 pseudogene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1747 AFE_1748 AFE_1748 AFE_1748 1512696 1513283 - hypothetical protein identified by glimmer%3B putative gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1748 AFE_1749 AFE_1749 AFE_1749 1512347 1512931 + conserved hypothetical protein identified by similarity to PIR:AC2205%3B match to protein family HMM PF02586 gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1749 AFE_1750 AFE_1750 umuD umuD 1513246 1513740 + umuD protein identified by similarity to SP:P04153%3B match to protein family HMM PF00717 gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1750 AFE_1751 AFE_1751 AFE_1751 1513748 1515031 + umuC protein identified by match to protein family HMM PF00817 gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1751 AFE_1752 AFE_1752 AFE_1752 1515103 1516281 + conserved hypothetical protein identified by similarity to GB:AAO54594.1 gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1752 AFE_1753 AFE_1753 kup kup 1516487 1518421 + potassium uptake protein identified by match to protein family HMM PF02705 gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1753 AFE_1754 AFE_1754 AFE_1754 1518552 1518866 + virulence-associated protein%2C putative identified by similarity to SP:Q46560%3B match to protein family HMM PF01381%3B match to protein family HMM TIGR02607 gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1754 AFE_1755 AFE_1755 AFE_1755 1520072 1520764 + conserved hypothetical protein identified by similarity to GB:AAN66820.1 gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1755 AFE_1756 AFE_1756 AFE_1756 1520790 1520975 - hypothetical protein identified by glimmer%3B putative gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1756 AFE_1757 AFE_1757 AFE_1757 1521058 1521363 - hypothetical protein identified by glimmer%3B putative gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1757 AFE_1758 AFE_1758 AFE_1758 1521773 1522300 + hypothetical protein identified by glimmer%3B putative gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1758 AFE_1759 AFE_1759 AFE_1759 1522505 1522636 - hypothetical protein identified by glimmer%3B putative gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1759 AFE_1760 AFE_1760 mutS mutS 1522800 1525412 - DNA mismatch repair protein MutS identified by match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070 gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1760 AFE_1761 AFE_1761 AFE_1761 1525437 1525673 - conserved hypothetical protein identified by similarity to GB:AAQ60975.1 gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1761 AFE_1762 AFE_1762 AFE_1762 1525721 1525981 + conserved hypothetical protein identified by similarity to SP:Q9F2U7 gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1762 AFE_1763 AFE_1763 AFE_1763 1526033 1527241 + glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1763 AFE_1764 AFE_1764 AFE_1764 1527473 1528165 - membrane protein%2C putative identified by match to protein family HMM PF01027 gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1764 AFE_1765 AFE_1765 AFE_1765 1528273 1528413 + hypothetical protein identified by glimmer%3B putative gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1765 AFE_1766 AFE_1766 AFE_1766 1529029 1529655 - hypothetical protein identified by glimmer%3B putative gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1766 AFE_1767 AFE_1767 AFE_1767 1528394 1529056 + exodeoxyribonuclease X%2C putative identified by similarity to SP:P76281%3B match to protein family HMM PF00929 gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1767 AFE_1768 AFE_1768 AFE_1768 1529724 1530083 + hypothetical protein identified by glimmer%3B putative gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1768 AFE_1769 AFE_1769 AFE_1769 1530100 1533933 - oxidoreductase%2C FAD-binding%2C putative identified by similarity to GB:AAQ61895.1%3B match to protein family HMM PF01565%3B match to protein family HMM PF02754%3B match to protein family HMM PF02913 gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1769 AFE_1770 AFE_1770 panC panC 1533933 1534769 - pantoate--beta-alanine ligase identified by similarity to SP:P31663%3B match to protein family HMM PF02569%3B match to protein family HMM TIGR00018 gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1770 AFE_1771 AFE_1771 panB panB 1534771 1535556 - 3-methyl-2-oxobutanoate hydroxymethyltransferase identified by similarity to SP:P31057%3B match to protein family HMM PF02548%3B match to protein family HMM TIGR00222 gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1771 AFE_1772 AFE_1772 AFE_1772 1535549 1536160 - deoxyguanosine kinase/deoxyadenosine kinase%2C putative identified by similarity to SP:Q59483%3B similarity to SP:Q59484 gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1772 AFE_1773 AFE_1773 AFE_1773 1536157 1536685 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase%2C putative%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:P26281 pseudogene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1773 AFE_1774 AFE_1774 AFE_1774 1536682 1538034 - polyA polymerase family protein identified by match to protein family HMM PF01743 gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1774 AFE_1775 AFE_1775 pcnB pcnB 1538056 1539489 - polyA polymerase identified by match to protein family HMM PF01743%3B match to protein family HMM TIGR01942 gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1775 AFE_1776 AFE_1776 AFE_1776 1539684 1540646 - glycosyl transferase identified by similarity to SP:O22007%3B match to protein family HMM PF00535 gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1776 AFE_1777 AFE_1777 guaB guaB 1540827 1542287 + inosine-5'-monophosphate dehydrogenase identified by similarity to SP:P06981%3B match to protein family HMM PF00478%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01302 gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1777 AFE_1778 AFE_1778 guaA guaA 1542291 1543835 + GMP synthase identified by similarity to SP:P49057%3B match to protein family HMM PF00117%3B match to protein family HMM PF00958%3B match to protein family HMM TIGR00884%3B match to protein family HMM TIGR00888 gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1778 AFE_1779 AFE_1779 AFE_1779 1544009 1544263 + plasmid stability protein%2C putative identified by similarity to SP:P55510 gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1779 AFE_1780 AFE_1780 AFE_1780 1544264 1544683 + plasmid stability protein%2C putative identified by match to protein family HMM PF01850 gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1780 AFE_1781 AFE_1781 AFE_1781 1544701 1544913 + transcriptional regulator%2C AbrB family identified by match to protein family HMM PF04014%3B match to protein family HMM TIGR01439 gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1781 AFE_1782 AFE_1782 AFE_1782 1545748 1547367 + amino acid permease family protein identified by match to protein family HMM PF00324 gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1782 AFE_1783 AFE_1783 proB-2 proB-2 1547506 1548657 + glutamate 5-kinase identified by similarity to SP:P07005%3B match to protein family HMM PF00696%3B match to protein family HMM PF01472%3B match to protein family HMM TIGR01027 gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1783 AFE_1784 AFE_1784 AFE_1784 1548733 1551408 - mechanosensitive ion channel family protein identified by match to protein family HMM PF00924 gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1784 AFE_1785 AFE_1785 AFE_1785 1551423 1551740 + hypothetical protein identified by glimmer%3B putative gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1785 AFE_1786 AFE_1786 AFE_1786 1551767 1552591 - conserved hypothetical protein identified by similarity to GB:CAD16844.1 gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1786 AFE_1787 AFE_1787 AFE_1787 1552730 1553365 + Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300%3B match to protein family HMM TIGR00057 gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1787 AFE_1788 AFE_1788 AFE_1788 1553416 1554075 + membrane-associated zinc metalloprotease%2C putative identified by similarity to GB:CAD85637.1%3B match to protein family HMM PF02163 gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1788 AFE_1789 AFE_1789 trpS trpS 1554075 1555286 + tryptophanyl-tRNA synthetase identified by similarity to GB:AAA92300.1%3B match to protein family HMM PF00579%3B match to protein family HMM TIGR00233 gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1789 AFE_1790 AFE_1790 scpA scpA 1555267 1556088 + segregation and condensation protein A identified by similarity to GB:AAM37169.1%3B match to protein family HMM PF02616 gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1790 AFE_1791 AFE_1791 scpB scpB 1556088 1556621 + segregation and condensation protein B identified by similarity to PIR:F81941%3B match to protein family HMM PF04079%3B match to protein family HMM TIGR00281 gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1791 AFE_1792 AFE_1792 AFE_1792 1556784 1558088 + sulfide-quinone reductase%2C putative identified by similarity to GB:AAF72963.1%3B match to protein family HMM PF00070%3B match to protein family HMM PF07992 gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1792 AFE_1793 AFE_1793 rluB rluB 1558212 1559090 + ribosomal large subunit pseudouridine synthase B identified by similarity to SP:P37765%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1793 AFE_1794 AFE_1794 AFE_1794 1559100 1559771 + base excision repair protein%2C HhH-GPD family identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730 gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1794 AFE_1795 AFE_1795 AFE_1795 1560075 1560347 - hypothetical protein identified by glimmer%3B putative gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1795 AFE_1796 AFE_1796 AFE_1796 1559740 1560156 + hypothetical protein identified by glimmer%3B putative gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1796 AFE_1797 AFE_1797 AFE_1797 1560355 1561866 - drug resistance transporter%2C EmrB/QacA family identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711 gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1797 AFE_1798 AFE_1798 AFE_1798 1561890 1562447 - membrane protein%2C putative gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1798 AFE_1799 AFE_1799 AFE_1799 1562460 1564985 - alpha-glucan phosphorylase family protein identified by match to protein family HMM PF00343%3B match to protein family HMM TIGR02094 gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1799 AFE_1800 AFE_1800 AFE_1800 1565042 1565392 - enolase domain protein identified by similarity to SP:P08734 gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1800 AFE_1801 AFE_1801 pyk pyk 1565404 1566828 - pyruvate kinase identified by match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064 gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1801 AFE_1802 AFE_1802 AFE_1802 1566828 1567748 - fructose-bisphosphate aldolase%2C putative identified by similarity to SP:P58315%3B match to protein family HMM PF01791 gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1802 AFE_1803 AFE_1803 AFE_1803 1567741 1569138 - pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1803 AFE_1804 AFE_1804 AFE_1804 1569192 1569356 - hypothetical protein identified by glimmer%3B putative gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1804 AFE_1805 AFE_1805 AFE_1805 1569338 1569538 - hypothetical protein identified by glimmer%3B putative gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1805 AFE_1806 AFE_1806 AFE_1806 1569699 1570100 + hypothetical protein identified by glimmer%3B putative gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1806 AFE_1807 AFE_1807 AFE_1807 1570226 1571185 - carbohydrate kinase%2C PfkB family identified by match to protein family HMM PF00294%3B match to protein family HMM TIGR03168 gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1807 AFE_1808 AFE_1808 AFE_1808 1571182 1572105 - phosphate acetyl/butyryl transferase identified by match to protein family HMM PF01515 gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1808 AFE_1809 AFE_1809 AFE_1809 1572130 1573629 - major facilitator family protein identified by similarity to SP:Q46909%3B match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1809 AFE_1810 AFE_1810 ackA ackA 1573626 1574810 - acetate kinase identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016 gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1810 AFE_1811 AFE_1811 AFE_1811 1574813 1576081 - 2-oxo acid dehydrogenase%2C acyltransferase%2C putative identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817 gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1811 AFE_1812 AFE_1812 AFE_1812 1576078 1577070 - dehydrogenase complex%2C E1 component%2C beta subunit%2C putative identified by similarity to SP:P51266%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1812 AFE_1813 AFE_1813 AFE_1813 1577067 1578131 - dehydrogenase complex%2C E1 component%2C alpha subunit%2C putative identified by match to protein family HMM PF00676 gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1813 AFE_1814 AFE_1814 AFE_1814 1578124 1578474 - alkylhydroperoxidase AhpD domain protein identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778 gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1814 AFE_1815 AFE_1815 gpmI-1 gpmI-1 1578510 1580033 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase identified by match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1815 AFE_1816 AFE_1816 ppsA ppsA 1580030 1582441 - phosphoenolpyruvate synthase identified by match to protein family HMM PF00391%3B match to protein family HMM PF01326%3B match to protein family HMM PF02896%3B match to protein family HMM TIGR01418 gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1816 AFE_1817 AFE_1817 AFE_1817 1582536 1583498 - sulfotransferase domain protein identified by match to protein family HMM PF00685 gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1817 AFE_1818 AFE_1818 AFE_1818 1583510 1584334 - rare lipoprotein A%2C putative identified by match to protein family HMM PF03330%3B match to protein family HMM PF05036%3B match to protein family HMM TIGR00413 gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1818 AFE_1819 AFE_1819 dapE dapE 1584324 1585472 - succinyl-diaminopimelate desuccinylase identified by similarity to SP:P24176%3B match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01246 gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1819 AFE_1820 AFE_1820 dapD dapD 1585484 1586308 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase identified by similarity to SP:P03948%3B match to protein family HMM TIGR00965 gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1820 AFE_1821 AFE_1821 AFE_1821 1586322 1587542 - aminotransferase%2C classes I and II identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR03538 gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1821 AFE_1822 AFE_1822 AFE_1822 1587526 1587909 + hypothetical protein identified by glimmer%3B putative gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1822 AFE_1823 AFE_1823 gph-1 gph-1 1588595 1589269 - phosphoglycolate phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01449%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1823 AFE_1824 AFE_1824 AFE_1824 1587884 1588633 + membrane protein%2C putative gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1824 AFE_1825 AFE_1825 ubiG ubiG 1589262 1589969 - 3-demethylubiquinone-9 3-methyltransferase identified by similarity to SP:P17993%3B match to protein family HMM PF02353%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242%3B match to protein family HMM TIGR01983 gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1825 AFE_1826 AFE_1826 AFE_1826 1589966 1591291 - amidohydrolase family protein identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969 gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1826 AFE_1827 AFE_1827 AFE_1827 1591371 1592597 - membrane-bound lytic murein transglycosylase B%2C putative identified by similarity to SP:P41052 gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1827 AFE_1828 AFE_1828 AFE_1828 1592594 1593160 - lipoprotein%2C NLP/P60 family identified by match to protein family HMM PF00877 gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1828 AFE_1829 AFE_1829 AFE_1829 1593289 1593366 + tRNA-Asn tRNA gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1829 AFE_1830 AFE_1830 AFE_1830 1593921 1594574 - toluene tolerance protein%2C putative identified by similarity to GB:AAD17960.1%3B match to protein family HMM PF05494 gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1830 AFE_1831 AFE_1831 AFE_1831 1594606 1595148 - hypothetical protein identified by glimmer%3B putative gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1831 AFE_1832 AFE_1832 AFE_1832 1595176 1595958 - hypothetical protein identified by glimmer%3B putative gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1832 AFE_1833 AFE_1833 AFE_1833 1595980 1596930 - RNA polymerase sigm-70 factor family identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937 gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1833 AFE_1834 AFE_1834 AFE_1834 1596952 1597308 - hypothetical protein identified by glimmer%3B putative gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1834 AFE_1835 AFE_1835 AFE_1835 1597433 1597669 + hypothetical protein identified by glimmer%3B putative gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1835 AFE_1836 AFE_1836 AFE_1836 1597950 1598387 - hypothetical protein identified by glimmer%3B putative gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1836 AFE_1837 AFE_1837 AFE_1837 1598310 1598579 + hypothetical protein identified by glimmer%3B putative gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1837 AFE_1838 AFE_1838 AFE_1838 1599183 1599374 - hypothetical protein identified by glimmer%3B putative gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1838 AFE_1839 AFE_1839 AFE_1839 1598793 1599209 + conserved hypothetical protein identified by similarity to PIR:C82434 gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1839 AFE_1840 AFE_1840 AFE_1840 1599569 1600485 - undecaprenyl-phosphate galactosephosphotransferase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:P26406 pseudogene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1840 AFE_1841 AFE_1841 AFE_1841 1600734 1600940 + hypothetical protein identified by glimmer%3B putative gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1841 AFE_1842 AFE_1842 AFE_1842 1600975 1601357 + DNA polymerase%2C bacteriophage-type%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:CAE35782.1 pseudogene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1842 AFE_1843 AFE_1843 tkt-1 tkt-1 1601311 1603341 + transketolase identified by match to protein family HMM PF00456%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00232 gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1843 AFE_1844 AFE_1844 AFE_1844 1603524 1604144 + ferredoxin identified by similarity to GB:AAC80173.1%3B match to protein family HMM PF00037%3B match to protein family HMM PF09313 gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1844 AFE_1845 AFE_1845 AFE_1845 1604154 1604393 + conserved hypothetical protein identified by similarity to GB:CAE32970.1 gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1845 AFE_1846 AFE_1846 AFE_1846 1605469 1605729 - hypothetical protein identified by glimmer%3B putative gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1846 AFE_1847 AFE_1847 AFE_1847 1604425 1605513 + C4-dicarboxylate transporter/malic acid transport protein%2C putative identified by match to protein family HMM PF03595 gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1847 AFE_1848 AFE_1848 AFE_1848 1605780 1606748 - base excision repair protein%2C HhH-GPD family identified by similarity to SP:P37878%3B match to protein family HMM PF00730 gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1848 AFE_1849 AFE_1849 AFE_1849 1605685 1605798 + hypothetical protein identified by glimmer%3B putative gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1849 AFE_1850 AFE_1850 AFE_1850 1606749 1606982 - conserved domain protein identified by similarity to GB:AAP04750.1 gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1850 AFE_1851 AFE_1851 AFE_1851 1607296 1607940 - glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535 gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1851 AFE_1852 AFE_1852 AFE_1852 1608116 1608334 - hypothetical protein identified by glimmer%3B putative gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1852 AFE_1853 AFE_1853 AFE_1853 1608344 1608541 - hypothetical protein identified by glimmer%3B putative gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1853 AFE_1854 AFE_1854 AFE_1854 1608650 1609906 - pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992 gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1854 AFE_1855 AFE_1855 AFE_1855 1609899 1610996 - membrane protein%2C putative identified by match to protein family HMM PF07690 gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1855 AFE_1856 AFE_1856 AFE_1856 1611053 1612561 - dehydrogenase%2C homolog identified by similarity to GB:AAN30934.1%3B match to protein family HMM PF00732%3B match to protein family HMM PF01266 gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1856 AFE_1857 AFE_1857 AFE_1857 1612575 1613360 - glucose 1-dehydrogenase%2C putative identified by similarity to SP:P39482%3B match to protein family HMM PF00106%3B match to protein family HMM PF08659 gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1857 AFE_1858 AFE_1858 AFE_1858 1613357 1613899 - hypothetical protein identified by glimmer%3B putative gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1858 AFE_1859 AFE_1859 AFE_1859 1613946 1614134 - hypothetical protein identified by glimmer%3B putative gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1859 AFE_1860 AFE_1860 AFE_1860 1614644 1615123 - hypothetical protein identified by glimmer%3B putative gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1860 AFE_1861 AFE_1861 phhB phhB 1614393 1614722 + pterin-4-alpha-carbinolamine dehydratase identified by match to protein family HMM PF01329 gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1861 AFE_1862 AFE_1862 AFE_1862 1615277 1615501 + heavy metal-binding protein%2C putative identified by match to protein family HMM PF00403 gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1862 AFE_1863 AFE_1863 AFE_1863 1615611 1615721 + hypothetical protein identified by glimmer%3B putative gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1863 AFE_1864 AFE_1864 AFE_1864 1615762 1615953 + hypothetical protein identified by glimmer%3B putative gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1864 AFE_1865 AFE_1865 AFE_1865 1616064 1616357 + hypothetical protein identified by glimmer%3B putative gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1865 AFE_1866 AFE_1866 AFE_1866 1616481 1616978 + polynucleotide kinase%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to SP:P06855 pseudogene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1866 AFE_1867 AFE_1867 AFE_1867 1616979 1617434 - hypothetical protein identified by glimmer%3B putative gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1867 AFE_1868 AFE_1868 lexA lexA 1617594 1618211 + LexA repressor identified by similarity to SP:P03033%3B match to protein family HMM PF00717%3B match to protein family HMM PF01726%3B match to protein family HMM TIGR00498 gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1868 AFE_1869 AFE_1869 AFE_1869 1618208 1618852 + cell division inhibitor%2C putative identified by similarity to SP:P08845 gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1869 AFE_1870 AFE_1870 AFE_1870 1618949 1620271 + conserved hypothetical protein identified by similarity to GB:AAM40399.1 gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1870 AFE_1871 AFE_1871 AFE_1871 1620264 1623311 + DNA polymerase III%2C alpha subunit%2C putative identified by match to protein family HMM PF01336%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1871 AFE_1872 AFE_1872 AFE_1872 1623552 1624319 + thiol:disulfide interchange protein%2C putative identified by similarity to SP:P77202 gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1872 AFE_1873 AFE_1873 pepN pepN 1624316 1626943 + aminopeptidase N identified by similarity to SP:P04825%3B match to protein family HMM PF01433%3B match to protein family HMM TIGR02414 gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1873 AFE_1874 AFE_1874 AFE_1874 1626985 1628454 - adenylate cyclase identified by match to protein family HMM PF01928 gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1874 AFE_1875 AFE_1875 AFE_1875 1628438 1629076 - ParA-like protein identified by similarity to SP:P07175 gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1875 AFE_1876 AFE_1876 ppk ppk 1629089 1631194 - polyphosphate kinase identified by similarity to SP:Q9S646%3B match to protein family HMM PF01816%3B match to protein family HMM PF02503 gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1876 AFE_1877 AFE_1877 folD folD 1631187 1632053 - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase identified by similarity to SP:P24186%3B match to protein family HMM PF00763%3B match to protein family HMM PF02882 gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1877 AFE_1878 AFE_1878 AFE_1878 1632288 1635368 - transporter%2C AcrB/AcrD/AcrF family identified by match to protein family HMM PF00873 gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1878 AFE_1879 AFE_1879 AFE_1879 1635380 1636471 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1879 AFE_1880 AFE_1880 AFE_1880 1636515 1638062 - RND efflux system%2C outer membrane lipoprotein%2C NodT family identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01845 gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1880 AFE_1881 AFE_1881 AFE_1881 1638285 1639073 + hypothetical protein identified by glimmer%3B putative gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1881 AFE_1882 AFE_1882 maf-2 maf-2 1639140 1639718 - maf protein identified by similarity to SP:Q02169%3B match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1882 AFE_1883 AFE_1883 ppc ppc 1639731 1642520 - phosphoenolpyruvate carboxylase identified by match to protein family HMM PF00311 gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1883 AFE_1884 AFE_1884 hfq hfq 1642855 1643121 + RNA chaperone Hfq identified by similarity to SP:P25521%3B match to protein family HMM PF01423%3B match to protein family HMM TIGR02383 gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1884 AFE_1885 AFE_1885 hflX hflX 1643145 1644443 + GTP-binding protein HflX identified by similarity to SP:P25519%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR03156 gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1885 AFE_1886 AFE_1886 hflK hflK 1644458 1645651 + hflK protein identified by similarity to SP:P25662%3B match to protein family HMM PF01145%3B match to protein family HMM TIGR01933 gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1886 AFE_1887 AFE_1887 hflC hflC 1645648 1646520 + hflC protein identified by similarity to SP:P25661%3B match to protein family HMM PF01145%3B match to protein family HMM TIGR01932 gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1887 AFE_1888 AFE_1888 hisZ hisZ 1646517 1647719 + ATP phosphoribosyltransferase regulatory subunit identified by similarity to SP:O34459%3B similarity to SP:Q55267%3B match to protein family HMM PF00587 gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1888 AFE_1889 AFE_1889 purA purA 1647762 1649057 + adenylosuccinate synthetase identified by similarity to SP:P12283%3B match to protein family HMM PF00709%3B match to protein family HMM TIGR00184 gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1889 AFE_1890 AFE_1890 AFE_1890 1649108 1649194 - tRNA-Leu tRNA gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1890 AFE_1891 AFE_1891 vacB vacB 1649232 1651472 + ribonuclease R identified by similarity to SP:P21499%3B match to protein family HMM PF00575%3B match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM PF08461%3B match to protein family HMM TIGR00358%3B match to protein family HMM TIGR02063 gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1891 AFE_1892 AFE_1892 AFE_1892 1651490 1652275 - conserved hypothetical protein identified by similarity to PIR:E83627%3B match to protein family HMM PF03976 gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1892 AFE_1893 AFE_1893 AFE_1893 1652310 1653698 - pyridine nucleotide-disulfide oxidoreductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1893 AFE_1894 AFE_1894 AFE_1894 1653800 1654552 - conserved hypothetical protein identified by match to protein family HMM PF00994 gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1894 AFE_1895 AFE_1895 AFE_1895 1654828 1655856 - ISAfe1%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1895 AFE_1896 AFE_1896 purN purN 1655979 1656638 - phosphoribosylglycinamide formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00639 gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1896 AFE_1897 AFE_1897 purM purM 1656631 1657668 - phosphoribosylformylglycinamidine cyclo-ligase identified by similarity to SP:P08178%3B match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878 gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1897 AFE_1898 AFE_1898 sod sod 1657813 1658430 - superoxide dismutase identified by similarity to SP:Q03300%3B match to protein family HMM PF02777 gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1898 AFE_1899 AFE_1899 AFE_1899 1657670 1657834 + hypothetical protein identified by glimmer%3B putative gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1899 AFE_1900 AFE_1900 AFE_1900 1658587 1659135 + CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase%2C putative identified by match to protein family HMM PF01066 gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1900 AFE_1901 AFE_1901 AFE_1901 1659135 1659845 + conserved hypothetical protein identified by match to protein family HMM PF00308 gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1901 AFE_1902 AFE_1902 yihY yihY 1659938 1660726 + YihY family protein identified by match to protein family HMM PF03631%3B match to protein family HMM TIGR00765 gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1902 AFE_1903 AFE_1903 AFE_1903 1660821 1661282 + hypothetical protein identified by glimmer%3B putative gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1903 AFE_1904 AFE_1904 rpmF rpmF 1661322 1661507 + ribosomal protein L32 identified by similarity to SP:P07840%3B match to protein family HMM PF01783%3B match to protein family HMM TIGR01031 gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1904 AFE_1905 AFE_1905 plsX plsX 1661545 1662570 + fatty acid/phospholipid synthesis protein PlsX identified by match to protein family HMM PF02504%3B match to protein family HMM TIGR00182 gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1905 AFE_1906 AFE_1906 fabH fabH 1662567 1663511 + 3-oxoacyl-(acyl-carrier-protein) synthase III identified by similarity to SP:P24249%3B match to protein family HMM PF08541%3B match to protein family HMM PF08545%3B match to protein family HMM TIGR00747 gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1906 AFE_1907 AFE_1907 fabD fabD 1663550 1664485 + malonyl CoA-acyl carrier protein transacylase identified by match to protein family HMM PF00698%3B match to protein family HMM TIGR00128 gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1907 AFE_1908 AFE_1908 fabG fabG 1664485 1665234 + 3-oxoacyl-(acyl-carrier-protein) reductase identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659%3B match to protein family HMM TIGR01830 gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1908 AFE_1909 AFE_1909 acpP acpP 1665319 1665567 + acyl carrier protein identified by similarity to SP:P55337%3B match to protein family HMM PF00550%3B match to protein family HMM TIGR00517 gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1909 AFE_1910 AFE_1910 fabF fabF 1665604 1666845 + 3-oxoacyl-(acyl-carrier-protein) synthase II identified by similarity to SP:P39435%3B match to protein family HMM PF00109%3B match to protein family HMM PF02801%3B match to protein family HMM TIGR03150 gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1910 AFE_1911 AFE_1911 AFE_1911 1666875 1667708 + 4-amino-4-deoxychorismate lyase%2C putative identified by similarity to SP:P28305%3B match to protein family HMM PF01063%3B match to protein family HMM TIGR03461 gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1911 AFE_1912 AFE_1912 AFE_1912 1667672 1668718 + conserved hypothetical protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to GB:AAO90046.1 pseudogene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1912 AFE_1913 AFE_1913 tmk tmk 1668715 1669359 + thymidylate kinase identified by similarity to SP:P37345%3B match to protein family HMM PF02223%3B match to protein family HMM TIGR00041 gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1913 AFE_1914 AFE_1914 holB holB 1669356 1670357 + DNA polymerase III%2C delta prime subunit identified by similarity to SP:P28631 gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1914 AFE_1915 AFE_1915 AFE_1915 1670341 1670697 + type IV pilus assembly protein PilZ%2C putative identified by similarity to PIR:B59241%3B match to protein family HMM PF07238 gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1915 AFE_1916 AFE_1916 AFE_1916 1670787 1670877 + tRNA-Ser tRNA gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1916 AFE_1917 AFE_1917 srpB srpB 1670923 1671022 + Bacterial signal recognition particle RNA gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1917 AFE_1918 AFE_1918 AFE_1918 1670925 1671029 + sRNA ncRNA gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1918 AFE_1919 AFE_1919 dnaX dnaX 1671047 1672765 + DNA polymerase III%2C subunits gamma and tau The gamma subunit of DNA polymerase III is a product of early translation termination of this gene caused by ribosomal slippage%3B identified by similarity to SP:P06710%3B match to protein family HMM PF00004%3B match to protein family HMM TIGR02397 gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1919 AFE_1920 AFE_1920 AFE_1920 1672785 1673108 + conserved hypothetical protein TIGR00103 identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103 gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1920 AFE_1921 AFE_1921 recR recR 1673115 1673714 + recombination protein RecR identified by match to protein family HMM PF01751%3B match to protein family HMM PF02132%3B match to protein family HMM TIGR00615 gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1921 AFE_1922 AFE_1922 amtB amtB 1673774 1674991 + ammonium transporter family protein identified by match to protein family HMM PF00909 gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1922 AFE_1923 AFE_1923 AFE_1923 1674994 1675845 + YjeF-related protein identified by match to protein family HMM PF01256%3B match to protein family HMM TIGR00196 gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1923 AFE_1924 AFE_1924 bioA bioA 1675832 1677181 + adenosylmethionine-8-amino-7-oxononanoate aminotransferase identified by similarity to SP:P53555%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00508 gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1924 AFE_1925 AFE_1925 AFE_1925 1677181 1677636 + CBS domain protein identified by match to protein family HMM PF00571 gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1925 AFE_1926 AFE_1926 AFE_1926 1677649 1678134 + conserved hypothetical protein TIGR00150 identified by match to protein family HMM PF02367%3B match to protein family HMM TIGR00150 gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1926 AFE_1927 AFE_1927 mutL mutL 1678124 1679911 + mismatch repair protein MutL identified by similarity to SP:P23367%3B match to protein family HMM PF01119%3B match to protein family HMM PF02518%3B match to protein family HMM PF08676%3B match to protein family HMM TIGR00585 gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1927 AFE_1928 AFE_1928 miaA miaA 1679836 1680855 + tRNA delta(2)-isopentenylpyrophosphate transferase identified by similarity to SP:P16384%3B match to protein family HMM PF01715%3B match to protein family HMM TIGR00174 gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1928 AFE_1929 AFE_1929 ndk ndk 1681015 1681440 + nucleoside diphosphate kinase identified by similarity to SP:Q59636%3B match to protein family HMM PF00334 gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1929 AFE_1930 AFE_1930 AFE_1930 1681444 1682532 + radical SAM enzyme%2C Cfr family identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00048 gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1930 AFE_1931 AFE_1931 pilF pilF 1682625 1683374 + type IV pilus biogenesis/stability protein PilW identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM TIGR02521 gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1931 AFE_1932 AFE_1932 AFE_1932 1683392 1684366 + conserved hypothetical protein identified by similarity to GB:AAO54954.1 gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1932 AFE_1933 AFE_1933 ispG ispG 1684356 1685456 + 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase identified by similarity to SP:P27433%3B match to protein family HMM PF04551%3B match to protein family HMM TIGR00612 gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1933 AFE_1934 AFE_1934 hisS hisS 1685492 1686811 + histidyl-tRNA synthetase identified by similarity to SP:P04804%3B match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00442 gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1934 AFE_1935 AFE_1935 AFE_1935 1686808 1687419 + conserved hypothetical protein identified by similarity to GB:AAQ61198.1 gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1935 AFE_1936 AFE_1936 AFE_1936 1687416 1688603 + PQQ enzyme repeat domain protein identified by match to protein family HMM PF01011%3B match to protein family HMM TIGR03300 gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1936 AFE_1937 AFE_1937 engA engA 1688615 1689964 + ribosome-associated GTPase EngA identified by similarity to SP:P77254%3B match to protein family HMM PF01926%3B match to protein family HMM PF08477%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650%3B match to protein family HMM TIGR03594 gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1937 AFE_1938 AFE_1938 AFE_1938 1689965 1690360 + hypothetical protein identified by glimmer%3B putative gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1938 AFE_1939 AFE_1939 pstS-1 pstS-1 1690555 1691631 + phosphate ABC transporter%2C periplasmic phosphate-binding protein PstS identified by similarity to SP:P06128%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR00975 gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1939 AFE_1940 AFE_1940 pstC_2 pstC_2 1691756 1692712 + phosphate ABC transporter%2C permease protein PstC identified by similarity to SP:P07653%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR02138 gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1940 AFE_1941 AFE_1941 pstC_1 pstC_1 1692712 1693623 + phosphate ABC transporter%2C permease protein%2C putative identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974 gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1941 AFE_1942 AFE_1942 AFE_1942 1693644 1694408 - hypothetical protein identified by glimmer%3B putative gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1942 AFE_1943 AFE_1943 AFE_1943 1694816 1695493 + dsbG domain protein identified by similarity to SP:P77202 gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1943 AFE_1944 AFE_1944 AFE_1944 1695505 1695621 + hypothetical protein identified by glimmer%3B putative gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1944 AFE_1945 AFE_1945 AFE_1945 1695634 1696392 + membrane protein%2C putative identified by match to protein family HMM PF01925 gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1945 AFE_1946 AFE_1946 AFE_1946 1696422 1696508 - tRNA-Leu tRNA gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1946 AFE_1947 AFE_1947 AFE_1947 1696671 1699781 - heavy metal efflux pump%2C CzcA family identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00914 gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1947 AFE_1948 AFE_1948 AFE_1948 1699774 1701093 - heavy metal efflux transporter%2C MFP subunit%2C putative identified by similarity to SP:P77239%3B match to protein family HMM TIGR01730 gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1948 AFE_1949 AFE_1949 AFE_1949 1701090 1702373 - outer membrane heavy metal efflux protein%2C putative identified by similarity to SP:P11092%3B match to protein family HMM PF02321 gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1949 AFE_1950 AFE_1950 AFE_1950 1702374 1702610 + hypothetical protein identified by glimmer%3B putative gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1950 AFE_1951 AFE_1951 AFE_1951 1703061 1703636 - conserved hypothetical protein TIGR00481 identified by match to protein family HMM PF01161%3B match to protein family HMM TIGR00481 gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1951 AFE_1952 AFE_1952 AFE_1952 1704354 1705025 + conserved hypothetical protein identified by similarity to GB:AAM03868.1 gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1952 AFE_1953 AFE_1953 AFE_1953 1705240 1705455 + ferredoxin%2C putative identified by similarity to SP:P00208%3B match to protein family HMM PF00037 gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1953 AFE_1954 AFE_1954 AFE_1954 1705506 1705581 - tRNA-Lys tRNA gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1954 AFE_1955 AFE_1955 AFE_1955 1705635 1706030 - transcriptional regulator%2C Fur family identified by match to protein family HMM PF01475 gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1955 AFE_1956 AFE_1956 AFE_1956 1706127 1707218 - oxidoreductase%2C FAD-binding identified by match to protein family HMM PF01266 gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1956 AFE_1957 AFE_1957 AFE_1957 1707235 1710789 - conserved hypothetical protein identified by similarity to GB:AAN68501.1%3B match to protein family HMM PF04357 gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1957 AFE_1958 AFE_1958 AFE_1958 1710786 1712516 - outer membrane protein%2C OMP85 family identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244 gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1958 AFE_1959 AFE_1959 AFE_1959 1712823 1713086 - hypothetical protein identified by glimmer%3B putative gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1959 AFE_1960 AFE_1960 dacB dacB 1713192 1714694 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase identified by similarity to SP:P24228%3B match to protein family HMM PF02113%3B match to protein family HMM TIGR00666 gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1960 AFE_1961 AFE_1961 AFE_1961 1714728 1715966 - AmpG permease protein%2C putative identified by similarity to SP:P36670%3B match to protein family HMM PF07690 gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1961 AFE_1962 AFE_1962 AFE_1962 1716026 1716301 - cytochrome c family protein identified by match to protein family HMM PF00034 gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1962 AFE_1963 AFE_1963 AFE_1963 1716593 1716865 + hypothetical protein identified by glimmer%3B putative gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1963 AFE_1964 AFE_1964 AFE_1964 1717124 1718248 + fatty acid desaturase identified by match to protein family HMM PF00487 gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1964 AFE_1965 AFE_1965 AFE_1965 1718307 1718711 - conserved hypothetical protein identified by similarity to GB:CAE32024.1 gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1965 AFE_1966 AFE_1966 AFE_1966 1718746 1719747 - NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1966 AFE_1967 AFE_1967 rfaD rfaD 1719747 1720736 - ADP-L-glycero-D-mannoheptose-6-epimerase identified by similarity to SP:P37420%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM TIGR02197 gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1967 AFE_1968 AFE_1968 AFE_1968 1720895 1722880 + potassium-efflux system protein identified by match to protein family HMM PF00999%3B match to protein family HMM PF02080%3B match to protein family HMM PF02254%3B match to protein family HMM TIGR01409 gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1968 AFE_1969 AFE_1969 acs acs 1722976 1724943 + acetyl-CoA synthetase identified by similarity to SP:P31638%3B match to protein family HMM PF00501%3B match to protein family HMM TIGR02188 gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1969 AFE_1970 AFE_1970 clpB clpB 1725114 1727714 - clpB protein identified by similarity to SP:P03815%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728 gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1970 AFE_1971 AFE_1971 AFE_1971 1727754 1728917 - transporter%2C putative identified by match to protein family HMM PF07690 gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1971 AFE_1972 AFE_1972 aroC aroC 1728921 1730012 - chorismate synthase identified by similarity to SP:P12008%3B match to protein family HMM PF01264%3B match to protein family HMM TIGR00033 gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1972 AFE_1973 AFE_1973 AFE_1973 1730016 1730810 - conserved hypothetical protein TIGR00294 identified by similarity to GB:CAD85074.1%3B match to protein family HMM PF02649%3B match to protein family HMM TIGR00294 gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1973 AFE_1974 AFE_1974 dxs dxs 1730852 1732726 - 1-deoxy-D-xylulose-5-phosphate synthase identified by similarity to SP:P77488%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00204 gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1974 AFE_1975 AFE_1975 ispA ispA 1732723 1733643 - geranyltranstransferase identified by similarity to SP:P22939%3B match to protein family HMM PF00348 gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1975 AFE_1976 AFE_1976 xseB xseB 1733640 1733909 - exodeoxyribonuclease VII%2C small subunit identified by match to protein family HMM PF02609%3B match to protein family HMM TIGR01280 gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1976 AFE_1977 AFE_1977 AFE_1977 1734020 1735231 + fosmidomycin resistance protein%2C putative identified by similarity to SP:P52067%3B match to protein family HMM PF07690 gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1977 AFE_1978 AFE_1978 AFE_1978 1735352 1736179 + TonB family protein identified by match to protein family HMM TIGR01352 gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1978 AFE_1979 AFE_1979 AFE_1979 1736231 1736602 - thioredoxin identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1979 AFE_1980 AFE_1980 xseA xseA 1736753 1738093 + exodeoxyribonuclease VII%2C large subunit identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237 gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1980 AFE_1981 AFE_1981 AFE_1981 1738201 1739730 - PQQ enzyme repeat protein gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1981 AFE_1982 AFE_1982 AFE_1982 1739731 1740177 - hypothetical protein identified by glimmer%3B putative gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1982 AFE_1983 AFE_1983 AFE_1983 1740347 1740529 + hypothetical protein identified by glimmer%3B putative gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1983 AFE_1984 AFE_1984 AFE_1984 1740641 1740811 + hypothetical protein identified by glimmer%3B putative gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1984 AFE_1985 AFE_1985 AFE_1985 1740920 1741096 + hypothetical protein identified by glimmer%3B putative gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1985 AFE_1986 AFE_1986 ppiB ppiB 1741238 1741750 + peptidyl-prolyl cis-trans isomerase B identified by similarity to SP:P23869%3B match to protein family HMM PF00160 gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1986 AFE_1987 AFE_1987 lpxH lpxH 1741755 1742528 + UDP-2%2C3-diacylglucosamine hydrolase identified by similarity to SP:Q9I2V0%3B match to protein family HMM PF00149%3B match to protein family HMM TIGR01854 gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1987 AFE_1988 AFE_1988 AFE_1988 1742560 1745043 + cation-transporting P-type ATPase%2C putative identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494 gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1988 AFE_1989 AFE_1989 leuA-2 leuA-2 1745133 1746836 - 2-isopropylmalate synthase identified by match to protein family HMM PF00682%3B match to protein family HMM PF08502%3B match to protein family HMM TIGR00970 gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1989 AFE_1990 AFE_1990 AFE_1990 1746978 1747463 + transcriptional regulator%2C AsnC family identified by match to protein family HMM PF01037 gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1990 AFE_1991 AFE_1991 AFE_1991 1747596 1748882 - conserved hypothetical protein identified by similarity to GB:BAC50343.1%3B match to protein family HMM PF03573 gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1991 AFE_1992 AFE_1992 AFE_1992 1748961 1750163 - C4-dicarboxylate transporter/malic acid transport protein identified by match to protein family HMM PF03595 gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1992 AFE_1993 AFE_1993 AFE_1993 1750286 1751191 + transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1993 AFE_1994 AFE_1994 ribB ribB 1751389 1752060 - 3%2C4-dihydroxy-2-butanone 4-phosphate synthase identified by similarity to SP:P24199%3B match to protein family HMM PF00926%3B match to protein family HMM TIGR00506 gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1994 AFE_1996 AFE_1996 AFE_1996 1752350 1752502 - hypothetical protein identified by glimmer%3B putative gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1996 AFE_1997 AFE_1997 AFE_1997 1752620 1753333 - autoinducer-binding transcriptional regulator%2C LuxR family identified by match to protein family HMM PF00196%3B match to protein family HMM PF03472 gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1997 AFE_1998 AFE_1998 AFE_1998 1753495 1753926 + hypothetical protein identified by glimmer%3B putative gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1998 AFE_1999 AFE_1999 AFE_1999 1754010 1754561 + autoinducer synthesis protein identified by similarity to SP:P12747%3B match to protein family HMM PF00765 gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_1999 AFE_2000 AFE_2000 AFE_2000 1754753 1754911 + hypothetical protein identified by glimmer%3B putative gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2000 AFE_2001 AFE_2001 AFE_2001 1754935 1755096 + hypothetical protein identified by glimmer%3B putative gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2001 AFE_2002 AFE_2002 AFE_2002 1755112 1755453 - conserved hypothetical protein identified by similarity to GB:AAP77659.1%3B match to protein family HMM PF01878 gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2002 AFE_2003 AFE_2003 AFE_2003 1755450 1755821 - conserved hypothetical protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by similarity to GB:BAB50151.1 pseudogene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2003 AFE_2004 AFE_2004 AFE_2004 1756381 1756809 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2004 AFE_2005 AFE_2005 AFE_2005 1756864 1757550 - isonitrile hydratase%2C putative identified by similarity to GB:BAC41251.1%3B match to protein family HMM PF01965 gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2005 AFE_2006 AFE_2006 AFE_2006 1757547 1758206 - transcriptional regulator%2C putative identified by match to protein family HMM PF04299 gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2006 AFE_2007 AFE_2007 AFE_2007 1758220 1758906 - conserved hypothetical protein identified by similarity to GB:CAD71376.1 gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2007 AFE_2008 AFE_2008 AFE_2008 1758878 1759378 - conserved hypothetical protein identified by similarity to GB:AAQ59281.1 gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2008 AFE_2009 AFE_2009 AFE_2009 1759466 1759996 - conserved domain protein identified by similarity to GB:AAN32872.1 gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2009 AFE_2010 AFE_2010 AFE_2010 1760020 1760247 - hypothetical protein identified by glimmer%3B putative gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2010 AFE_2011 AFE_2011 AFE_2011 1760132 1760743 - transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2011 AFE_2012 AFE_2012 AFE_2012 1760818 1761174 + conserved hypothetical protein identified by similarity to GB:BAC68441.1 gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2012 AFE_2013 AFE_2013 AFE_2013 1761179 1761616 - transcriptional regulator%2C MarR family identified by match to protein family HMM PF01047 gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2013 AFE_2014 AFE_2014 AFE_2014 1761720 1762199 + alkylhydroperoxidase AhpD family core domain protein identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778 gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2014 AFE_2015 AFE_2015 AFE_2015 1762196 1762681 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2015 AFE_2016 AFE_2016 AFE_2016 1762799 1762875 - tRNA-Arg tRNA gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2016 AFE_2017 AFE_2017 AFE_2017 1762944 1763678 - PspA/IM30 family identified by match to protein family HMM PF04012 gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2017 AFE_2018 AFE_2018 AFE_2018 1763718 1764542 - conserved hypothetical protein identified by similarity to PIR:C70988 gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2018 AFE_2019 AFE_2019 AFE_2019 1764539 1765516 - conserved domain protein gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2019 AFE_2020 AFE_2020 AFE_2020 1765550 1765960 + hypothetical protein identified by glimmer%3B putative gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2020 AFE_2021 AFE_2021 AFE_2021 1766064 1768499 - copper-translocating P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2021 AFE_2022 AFE_2022 aspC aspC 1768717 1769898 + aspartate aminotransferase identified by similarity to SP:P23034%3B match to protein family HMM PF00155 gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2022 AFE_2023 AFE_2023 purT purT 1769944 1771128 - phosphoribosylglycinamide formyltransferase 2 identified by similarity to SP:P33221%3B match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM TIGR01142 gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2023 AFE_2024 AFE_2024 AFE_2024 1771228 1772148 + 6-phosphogluconate dehydrogenase family protein identified by match to protein family HMM PF00393%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00872 gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2024 AFE_2025 AFE_2025 zwf zwf 1772149 1773612 + glucose-6-phosphate 1-dehydrogenase identified by match to protein family HMM PF00479%3B match to protein family HMM PF02781%3B match to protein family HMM TIGR00871 gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2025 AFE_2026 AFE_2026 AFE_2026 1773881 1774174 + transcriptional regulator%2C ArsR family identified by match to protein family HMM PF01022 gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2026 AFE_2027 AFE_2027 dusA dusA 1774177 1775169 - tRNA-dihydrouridine synthase A identified by similarity to SP:Q8X5V6%3B match to protein family HMM PF01207 gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2027 AFE_2028 AFE_2028 parC parC 1775207 1777612 - DNA topoisomerase IV%2C A subunit identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01062 gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2028 AFE_2029 AFE_2029 parE parE 1777630 1779600 - DNA topoisomerase IV%2C subunit B identified by similarity to SP:P20083%3B match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF02518 gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2029 AFE_2030 AFE_2030 AFE_2030 1779649 1779747 + hypothetical protein identified by glimmer%3B putative gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2030 AFE_2031 AFE_2031 AFE_2031 1779889 1781196 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2031 AFE_2032 AFE_2032 AFE_2032 1781193 1781855 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2032 AFE_2033 AFE_2033 AFE_2033 1781933 1782244 - conserved domain protein identified by match to protein family HMM PF03413 gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2033 AFE_2034 AFE_2034 AFE_2034 1782440 1783516 - conserved domain protein identified by similarity to GB:AAM05308.1 gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2034 AFE_2035 AFE_2035 AFE_2035 1783559 1786585 - transporter%2C AcrB/AcrD/AcrF family identified by match to protein family HMM PF00873 gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2035 AFE_2036 AFE_2036 AFE_2036 1786585 1787625 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2036 AFE_2037 AFE_2037 AFE_2037 1787622 1788971 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2037 AFE_2038 AFE_2038 AFE_2038 1789245 1789376 - hypothetical protein identified by glimmer%3B putative gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2038 AFE_2039 AFE_2039 AFE_2039 1789506 1789661 - hypothetical protein identified by glimmer%3B putative gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2039 AFE_2040 AFE_2040 AFE_2040 1789693 1792056 - TonB-dependent receptor identified by match to protein family HMM PF00593 gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2040 AFE_2041 AFE_2041 AFE_2041 1792284 1793237 - membrane protein%2C putative gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2041 AFE_2042 AFE_2042 AFE_2042 1793273 1793443 - hypothetical protein identified by glimmer%3B putative gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2042 AFE_2043 AFE_2043 AFE_2043 1793364 1796462 - transporter%2C AcrB/AcrD/AcrF family identified by match to protein family HMM PF00873 gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2043 AFE_2044 AFE_2044 AFE_2044 1796459 1797469 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2044 AFE_2045 AFE_2045 AFE_2045 1797466 1798809 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2045 AFE_2046 AFE_2046 AFE_2046 1798806 1798937 - hypothetical protein identified by glimmer%3B putative gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2046 AFE_2047 AFE_2047 AFE_2047 1799005 1799316 - hypothetical protein identified by glimmer%3B putative gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2047 AFE_2048 AFE_2048 AFE_2048 1798914 1799030 + hypothetical protein identified by glimmer%3B putative gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2048 AFE_2049 AFE_2049 AFE_2049 1799351 1799557 + hypothetical protein identified by glimmer%3B putative gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2049 AFE_2050 AFE_2050 AFE_2050 1799766 1799963 + hypothetical protein identified by glimmer%3B putative gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2050 AFE_2051 AFE_2051 AFE_2051 1800280 1800498 - hypothetical protein identified by glimmer%3B putative gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2051 AFE_2052 AFE_2052 AFE_2052 1800608 1801657 + membrane protein%2C putative identified by match to protein family HMM PF00892 gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2052 AFE_2053 AFE_2053 xfp xfp 1801753 1804200 + xylulose-5-phosphate/fructose-6-phosphate phosphoketolase identified by similarity to SP:Q9AEM9%3B match to protein family HMM PF03894 gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2053 AFE_2054 AFE_2054 AFE_2054 1804287 1805069 + conserved hypothetical protein gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2054 AFE_2055 AFE_2055 AFE_2055 1805146 1805238 - tRNA-Ser tRNA gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2055 AFE_2056 AFE_2056 secF secF 1805316 1806329 - protein-export membrane protein SecF identified by similarity to SP:P19674%3B match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966 gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2056 AFE_2057 AFE_2057 secD secD 1806274 1808058 - protein-export membrane protein SecD identified by similarity to SP:P19673%3B match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129 gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2057 AFE_2058 AFE_2058 AFE_2058 1808070 1808405 - preprotein translocase%2C YajC subunit identified by similarity to SP:P19677%3B match to protein family HMM PF02699%3B match to protein family HMM TIGR00739 gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2058 AFE_2059 AFE_2059 tgt tgt 1808446 1809561 - queuine tRNA-ribosyltransferase identified by similarity to SP:Q54177%3B match to protein family HMM PF01702%3B match to protein family HMM TIGR00430%3B match to protein family HMM TIGR00449 gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2059 AFE_2060 AFE_2060 queA queA 1809558 1810595 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase identified by similarity to SP:P21516%3B match to protein family HMM PF02547%3B match to protein family HMM TIGR00113 gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2060 AFE_2061 AFE_2061 AFE_2061 1810604 1811953 - CBS domain protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2061 AFE_2062 AFE_2062 AFE_2062 1811968 1812561 - CBS domain protein identified by match to protein family HMM PF00571 gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2062 AFE_2063 AFE_2063 metZ metZ 1812624 1813838 - O-succinylhomoserine sulfhydrylase identified by match to protein family HMM PF01053%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR01325 gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2063 AFE_2064 AFE_2064 purF purF 1813835 1815262 - amidophosphoribosyltransferase identified by similarity to SP:P00497%3B match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2064 AFE_2065 AFE_2065 AFE_2065 1815270 1815767 - CvpA family protein identified by similarity to SP:P08550%3B match to protein family HMM PF02674 gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2065 AFE_2066 AFE_2066 folC folC 1815764 1817053 - folylpolyglutamate synthase/dihydrofolate synthase identified by similarity to SP:P08192%3B match to protein family HMM PF02875%3B match to protein family HMM PF08245%3B match to protein family HMM TIGR01499 gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2066 AFE_2067 AFE_2067 accD accD 1817082 1817966 - acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit identified by match to protein family HMM TIGR00515 gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2067 AFE_2068 AFE_2068 trpA trpA 1817963 1818781 - tryptophan synthase%2C alpha subunit identified by match to protein family HMM PF00290%3B match to protein family HMM TIGR00262 gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2068 AFE_2069 AFE_2069 trpB trpB 1818778 1819977 - tryptophan synthase%2C beta subunit identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00263 gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2069 AFE_2070 AFE_2070 trpF trpF 1819988 1820605 - N-(5'phosphoribosyl)anthranilate isomerase identified by similarity to SP:Q56320%3B match to protein family HMM PF00697 gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2070 AFE_2071 AFE_2071 truA truA 1820660 1821475 - tRNA pseudouridine synthase A identified by similarity to SP:P07649%3B match to protein family HMM PF01416%3B match to protein family HMM TIGR00071 gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2071 AFE_2072 AFE_2072 AFE_2072 1821488 1823656 - conserved domain protein gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2072 AFE_2073 AFE_2073 AFE_2073 1823646 1823741 + hypothetical protein identified by glimmer%3B putative gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2073 AFE_2074 AFE_2074 asd asd 1823747 1824769 - aspartate-semialdehyde dehydrogenase identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01296 gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2074 AFE_2075 AFE_2075 leuB leuB 1824777 1825853 - 3-isopropylmalate dehydrogenase identified by similarity to SP:Q51375%3B match to protein family HMM PF00180%3B match to protein family HMM TIGR00169 gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2075 AFE_2076 AFE_2076 mobA mobA 1826012 1826569 + molybdopterin-guanine dinucleotide biosynthesis protein A identified by similarity to SP:P32173%3B match to protein family HMM TIGR02665 gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2076 AFE_2077 AFE_2077 mobB mobB 1826566 1827060 + molybdopterin-guanine dinucleotide biosynthesis protein B identified by match to protein family HMM PF03205%3B match to protein family HMM TIGR00176 gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2077 AFE_2078 AFE_2078 moeA moeA 1827063 1828304 + molybdopterin biosynthesis MoeA protein identified by similarity to SP:P12281%3B match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177 gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2078 AFE_2079 AFE_2079 nuc nuc 1828313 1828954 - endonuclease identified by similarity to PIR:I79276 gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2079 AFE_2080 AFE_2080 sppA sppA 1829044 1830861 - signal peptide peptidase SppA%2C 67K type identified by similarity to SP:P08395%3B match to protein family HMM PF01343%3B match to protein family HMM TIGR00705%3B match to protein family HMM TIGR00706 gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2080 AFE_2081 AFE_2081 AFE_2081 1831069 1833978 - alpha-amylase family protein identified by match to protein family HMM PF00128%3B match to protein family HMM TIGR02401 gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2081 AFE_2082 AFE_2082 AFE_2082 1833984 1835840 - alpha-amylase family protein identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02402 gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2082 AFE_2083 AFE_2083 AFE_2083 1835861 1837096 - glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2083 AFE_2084 AFE_2084 AFE_2084 1837086 1837778 - conserved hypothetical protein identified by similarity to GB:AAL63368.1 gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2084 AFE_2085 AFE_2085 AFE_2085 1838097 1838738 - conserved hypothetical protein identified by similarity to GB:AAM31475.1 gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2085 AFE_2086 AFE_2086 AFE_2086 1838900 1839337 - heat shock protein%2C Hsp20 family identified by similarity to GB:AAC44757.1%3B match to protein family HMM PF00011 gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2086 AFE_2087 AFE_2087 AFE_2087 1839339 1839485 - hypothetical protein identified by glimmer%3B putative gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2087 AFE_2088 AFE_2088 AFE_2088 1839676 1840683 + zinc-binding alcohol dehydrogenase family protein identified by match to protein family HMM PF08240%3B match to protein family HMM TIGR02822 gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2088 AFE_2089 AFE_2089 AFE_2089 1840701 1841462 + hypothetical protein identified by glimmer%3B putative gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2089 AFE_2090 AFE_2090 AFE_2090 1841785 1842726 + peptidase%2C M48 family identified by similarity to GB:AAQ61923.1%3B match to protein family HMM PF01435 gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2090 AFE_2091 AFE_2091 AFE_2091 1842831 1844360 + drug resistance transporter%2C EmrB/QacA family identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711 gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2091 AFE_2092 AFE_2092 AFE_2092 1844427 1844729 + hypothetical protein identified by glimmer%3B putative gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2092 AFE_2093 AFE_2093 AFE_2093 1844731 1845453 - hypothetical protein identified by glimmer%3B putative gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2093 AFE_2094 AFE_2094 AFE_2094 1845543 1845863 - hypothetical protein identified by glimmer%3B putative gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2094 AFE_2095 AFE_2095 AFE_2095 1845873 1846232 - hypothetical protein identified by glimmer%3B putative gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2095 AFE_2096 AFE_2096 AFE_2096 1847025 1847891 + hypothetical protein identified by glimmer%3B putative gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2096 AFE_2097 AFE_2097 AFE_2097 1847993 1849297 + hypothetical protein identified by glimmer%3B putative gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2097 AFE_2098 AFE_2098 AFE_2098 1849319 1849468 - hypothetical protein identified by glimmer%3B putative gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2098 AFE_2099 AFE_2099 AFE_2099 1849651 1849830 + hypothetical protein identified by glimmer%3B putative gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2099 AFE_2100 AFE_2100 AFE_2100 1850942 1851118 + hypothetical protein identified by glimmer%3B putative gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2100 AFE_2101 AFE_2101 AFE_2101 1851256 1851498 - hypothetical protein identified by glimmer%3B putative gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2101 AFE_2102 AFE_2102 AFE_2102 1851665 1853988 + transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to GB:AAM09905.1 pseudogene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2102 AFE_2103 AFE_2103 AFE_2103 1853988 1855082 + efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2103 AFE_2104 AFE_2104 AFE_2104 1855079 1858183 + transporter%2C AcrB/AcrD/AcrF family identified by match to protein family HMM PF00873 gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2104 AFE_2105 AFE_2105 AFE_2105 1858209 1858928 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2105 AFE_2106 AFE_2106 AFE_2106 1858921 1859646 + ABC transporter%2C permease protein%2C putative identified by similarity to GB:AAP29240.1 gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2106 AFE_2107 AFE_2107 AFE_2107 1859689 1860405 + ABC transporter%2C permease protein%2C putative gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2107 AFE_2108 AFE_2108 AFE_2108 1861032 1861232 - hypothetical protein identified by glimmer%3B putative gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2108 AFE_2109 AFE_2109 AFE_2109 1861255 1861621 + conserved hypothetical protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2109 AFE_2110 AFE_2110 gatB gatB 1861698 1863134 - glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase%2C B subunit identified by match to protein family HMM PF01162%3B match to protein family HMM PF02637%3B match to protein family HMM PF02934%3B match to protein family HMM TIGR00133 gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2110 AFE_2111 AFE_2111 gatA gatA 1863131 1864603 - glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase%2C A subunit identified by similarity to SP:O06491%3B match to protein family HMM PF01425%3B match to protein family HMM TIGR00132 gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2111 AFE_2112 AFE_2112 gatC gatC 1864613 1864900 - glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase%2C C subunit identified by match to protein family HMM PF02686%3B match to protein family HMM TIGR00135 gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2112 AFE_2113 AFE_2113 AFE_2113 1864903 1865742 - vacJ lipoprotein identified by similarity to SP:P76506%3B match to protein family HMM PF04333 gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2113 AFE_2114 AFE_2114 AFE_2114 1865745 1866404 - conserved hypothetical protein identified by match to protein family HMM PF05494 gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2114 AFE_2115 AFE_2115 AFE_2115 1866449 1867552 - radical SAM domain protein identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR03470 gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2115 AFE_2116 AFE_2116 AFE_2116 1867658 1868500 - hypothetical protein identified by glimmer%3B putative gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2116 AFE_2117 AFE_2117 AFE_2117 1868497 1869513 - membrane protein%2C putative identified by match to protein family HMM TIGR00374%3B match to protein family HMM TIGR03476 gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2117 AFE_2118 AFE_2118 AFE_2118 1869515 1872154 - membrane protein%2C putative identified by similarity to GB:CAD85670.1%3B match to protein family HMM TIGR03480 gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2118 AFE_2119 AFE_2119 AFE_2119 1872198 1873073 - conserved hypothetical protein identified by similarity to SP:Q8DCD5%3B match to protein family HMM PF04794%3B match to protein family HMM TIGR03473 gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2119 AFE_2120 AFE_2120 AFE_2120 1873075 1874505 - radical SAM domain protein identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR03471 gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2120 AFE_2121 AFE_2121 AFE_2121 1874502 1875662 - glycosyl transferase%2C group 2 family protein identified by match to protein family HMM PF00535%3B match to protein family HMM TIGR03472 gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2121 AFE_2122 AFE_2122 AFE_2122 1875705 1876694 - conserved hypothetical protein identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF05368%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR03466 gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2122 AFE_2123 AFE_2123 AFE_2123 1876691 1877404 - MTA/SAH nucleosidase%2C putative identified by similarity to SP:P24247%3B match to protein family HMM PF01048%3B match to protein family HMM TIGR03468 gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2123 AFE_2124 AFE_2124 shc shc 1877386 1879317 - squalene-hopene cyclase identified by similarity to SP:P33990%3B match to protein family HMM PF00432%3B match to protein family HMM TIGR01507%3B match to protein family HMM TIGR01787 gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2124 AFE_2125 AFE_2125 AFE_2125 1879314 1880357 - phytoene/squalene synthetase family protein identified by match to protein family HMM PF00494 gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2125 AFE_2126 AFE_2126 gpsA gpsA 1880516 1881550 - glycerol-3-phosphate dehydrogenase (NAD(P)+) identified by similarity to SP:P37606%3B match to protein family HMM PF01210%3B match to protein family HMM PF07479 gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2126 AFE_2127 AFE_2127 secB secB 1881554 1882003 - preprotein translocase%2C SecB subunit identified by similarity to SP:P15040%3B match to protein family HMM PF02556%3B match to protein family HMM TIGR00809 gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2127 AFE_2128 AFE_2128 AFE_2128 1882360 1882437 + tRNA-Glu tRNA gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2128 AFE_2129 AFE_2129 AFE_2129 1882734 1883144 - virulence-associated protein%2C putative identified by similarity to PIR:B49205%3B match to protein family HMM PF01850 gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2129 AFE_2130 AFE_2130 AFE_2130 1883141 1883371 - virulence-associated protein%2C putative identified by similarity to SP:Q05459 gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2130 AFE_2131 AFE_2131 AFE_2131 1883674 1885194 - aldehyde dehydrogenase (NAD) family protein identified by match to protein family HMM PF00171 gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2131 AFE_2132 AFE_2132 proS proS 1885497 1887209 + prolyl-tRNA synthetase identified by similarity to SP:P16659%3B match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF04073%3B match to protein family HMM TIGR00409 gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2132 AFE_2133 AFE_2133 AFE_2133 1887196 1887678 + universal stress family protein identified by match to protein family HMM PF00582 gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2133 AFE_2134 AFE_2134 AFE_2134 1887691 1888356 - lipoprotein%2C putative identified by similarity to GB:CAD13844.1 gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2134 AFE_2135 AFE_2135 AFE_2135 1888361 1889299 - mce-related protein identified by match to protein family HMM PF02470 gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2135 AFE_2136 AFE_2136 pcm-1 pcm-1 1889451 1890104 + protein-L-isoaspartate O-methyltransferase identified by similarity to SP:P24206%3B match to protein family HMM PF01135 gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2136 AFE_2137 AFE_2137 AFE_2137 1890111 1890656 + hydrolase%2C isochorismatase family identified by match to protein family HMM PF00857 gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2137 AFE_2138 AFE_2138 AFE_2138 1890637 1892490 + PDZ domain protein identified by match to protein family HMM PF05299 gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2138 AFE_2139 AFE_2139 AFE_2139 1892493 1893293 - conserved hypothetical protein TIGR00282 identified by similarity to PIR:AF3015%3B match to protein family HMM PF00149%3B match to protein family HMM TIGR00282 gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2139 AFE_2140 AFE_2140 AFE_2140 1893293 1893868 - 5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812%3B match to protein family HMM TIGR02727 gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2140 AFE_2141 AFE_2141 AFE_2141 1893909 1894089 - 6S / SsrS RNA ncRNA gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2141 AFE_2142 AFE_2142 AFE_2142 1894099 1894413 - conserved hypothetical protein identified by similarity to GB:AAO28668.1%3B match to protein family HMM PF05164 gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2142 AFE_2143 AFE_2143 AFE_2143 1894441 1894698 - hypothetical protein identified by glimmer%3B putative gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2143 AFE_2144 AFE_2144 AFE_2144 1894765 1896675 + penicillin-binding protein 2%2C putative identified by similarity to SP:P08150%3B match to protein family HMM PF00905%3B match to protein family HMM PF03717%3B match to protein family HMM TIGR03423 gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2144 AFE_2145 AFE_2145 rplY rplY 1896688 1897296 + ribosomal protein L25 identified by similarity to SP:P14194%3B match to protein family HMM PF01386%3B match to protein family HMM TIGR00731 gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2145 AFE_2146 AFE_2146 pth pth 1897303 1897872 + peptidyl-tRNA hydrolase identified by similarity to SP:P23932%3B match to protein family HMM PF01195%3B match to protein family HMM TIGR00447 gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2146 AFE_2147 AFE_2147 ychF ychF 1897882 1898973 + GTP-binding protein YchF identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092 gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2147 AFE_2148 AFE_2148 AFE_2148 1899031 1899576 + DNA-binding protein%2C putative identified by similarity to GB:AAO56394.1%3B match to protein family HMM PF01381%3B match to protein family HMM PF07883 gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2148 AFE_2149 AFE_2149 hyfB hyfB 1899573 1901555 + hydrogenase-4%2C B subunit identified by similarity to SP:P23482%3B match to protein family HMM PF00361 gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2149 AFE_2150 AFE_2150 hyfC hyfC 1901552 1902493 + hydrogenase-4%2C C subunit identified by similarity to SP:P77858%3B match to protein family HMM PF00146 gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2150 AFE_2151 AFE_2151 hyfE hyfE 1902495 1903172 + hydrogenase-4%2C E subunit identified by similarity to SP:P77524 gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2151 AFE_2152 AFE_2152 hyfF hyfF 1903172 1904626 + hydrogenase-4%2C F subunit identified by similarity to SP:P77437%3B match to protein family HMM PF00361 gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2152 AFE_2153 AFE_2153 hyfG hyfG 1904637 1906184 + hydrogenase-4%2C G subunit identified by similarity to SP:P77329%3B match to protein family HMM PF00329%3B match to protein family HMM PF00346 gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2153 AFE_2154 AFE_2154 hyfI hyfI 1906221 1906718 + hydrogenase-4%2C I subunit identified by similarity to SP:P77668%3B match to protein family HMM PF01058 gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2154 AFE_2155 AFE_2155 cbbL2 cbbL2 1906975 1908354 + ribulose bisphosphate carboxylase%2C large subunit 2 identified by match to protein family HMM PF00016%3B match to protein family HMM PF02493%3B match to protein family HMM PF02788 gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2155 AFE_2156 AFE_2156 cbbQ-2 cbbQ-2 1908504 1909322 + CbbQ protein identified by similarity to GB:BAA76361.1%3B match to protein family HMM PF07728%3B match to protein family HMM PF08406 gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2156 AFE_2157 AFE_2157 AFE_2157 1909341 1911620 + von Willebrand factor type A domain protein identified by match to protein family HMM PF00092 gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2157 AFE_2158 AFE_2158 AFE_2158 1911627 1912532 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2158 AFE_2159 AFE_2159 phnA phnA 1912535 1912876 - alkylphosphonate utilization operon protein PhnA identified by match to protein family HMM PF03831%3B match to protein family HMM PF08274%3B match to protein family HMM TIGR00686 gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2159 AFE_2160 AFE_2160 AFE_2160 1912890 1913597 - conserved hypothetical protein identified by similarity to GB:CAE33855.1 gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2160 AFE_2161 AFE_2161 AFE_2161 1913830 1915695 + conserved hypothetical protein identified by similarity to GB:AAM36869.1 gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2161 AFE_2162 AFE_2162 AFE_2162 1915692 1915805 + hypothetical protein identified by glimmer%3B putative gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2162 AFE_2163 AFE_2163 AFE_2163 1916382 1916969 + hypothetical protein identified by glimmer%3B putative gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2163 AFE_2164 AFE_2164 AFE_2164 1916988 1917176 + hypothetical protein identified by glimmer%3B putative gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2164 AFE_2165 AFE_2165 AFE_2165 1917733 1918266 + hypothetical protein identified by glimmer%3B putative gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2165 AFE_2166 AFE_2166 AFE_2166 1918446 1919783 + toxin secretion protein%2C HlyD family identified by similarity to SP:P22519%3B match to protein family HMM PF00529 gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2166 AFE_2167 AFE_2167 AFE_2167 1919780 1921951 + toxin secretion ABC transporter%2C ATP-binding protein%2C HlyB family identified by similarity to SP:P22520%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM PF03412 gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2167 AFE_2168 AFE_2168 AFE_2168 1923425 1923649 - hypothetical protein identified by glimmer%3B putative gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2168 AFE_2169 AFE_2169 AFE_2169 1921986 1923476 + outer membrane toxin secretion efflux protein%2C putative identified by similarity to SP:P11092%3B match to protein family HMM PF02321 gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2169 AFE_2170 AFE_2170 AFE_2170 1923632 1924402 + polysaccharide deacetylase family protein identified by match to protein family HMM PF01522 gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2170 AFE_2171 AFE_2171 AFE_2171 1924414 1925781 + GTP-binding protein gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2171 AFE_2172 AFE_2172 AFE_2172 1925808 1927094 + beta-lactamase identified by match to protein family HMM PF00144 gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2172 AFE_2173 AFE_2173 AFE_2173 1927119 1927649 - NUDIX hydrolase identified by match to protein family HMM PF00293 gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2173 AFE_2174 AFE_2174 AFE_2174 1927731 1928174 - NUDIX hydrolase identified by match to protein family HMM PF00293 gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2174 AFE_2175 AFE_2175 rsuA rsuA 1928171 1928926 - ribosomal small subunit pseudouridine synthase A identified by similarity to SP:P33918%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2175 AFE_2176 AFE_2176 AFE_2176 1928969 1930000 + peptidyl-arginine deiminase%2C Porphyromonas-type identified by match to protein family HMM PF04371 gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2176 AFE_2177 AFE_2177 sreA sreA 1930213 1932942 + sulfur reductase%2C molybdopterin subunit identified by similarity to GB:CAC86937.1%3B match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879 gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2177 AFE_2178 AFE_2178 sreB sreB 1932953 1933576 + sulfur reductase%2C iron-sulfur binding subunit identified by similarity to GB:CAC86938.1%3B match to protein family HMM PF00037 gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2178 AFE_2179 AFE_2179 sreC sreC 1933573 1934607 + sulfur reductase%2C membrane subunit%2C putative identified by match to protein family HMM PF03916 gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2179 AFE_2180 AFE_2180 AFE_2180 1935091 1935768 - hypothetical protein identified by glimmer%3B putative gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2180 AFE_2181 AFE_2181 sreD sreD 1934549 1935115 + sulfur reductase identified by similarity to GB:BAC59713.1 gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2181 AFE_2182 AFE_2182 AFE_2182 1935894 1936169 - hypothetical protein identified by glimmer%3B putative gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2182 AFE_2183 AFE_2183 AFE_2183 1936227 1936658 - universal stress family protein identified by match to protein family HMM PF00582 gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2183 AFE_2184 AFE_2184 AFE_2184 1936711 1938255 - drug resistance transporter%2C EmrB/QacA family identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711 gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2184 AFE_2185 AFE_2185 AFE_2185 1938258 1938701 - transcriptional regulator%2C MarR family identified by match to protein family HMM PF01047 gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2185 AFE_2186 AFE_2186 lgt lgt 1938886 1939704 + prolipoprotein diacylglyceryl transferase identified by similarity to SP:P37149%3B match to protein family HMM PF01790%3B match to protein family HMM TIGR00544 gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2186 AFE_2187 AFE_2187 rep rep 1939726 1941714 + ATP-dependent DNA helicase Rep identified by similarity to SP:P09980%3B match to protein family HMM PF00580 gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2187 AFE_2188 AFE_2188 rpsT rpsT 1941815 1942090 - ribosomal protein S20 identified by similarity to SP:P02378%3B match to protein family HMM PF01649%3B match to protein family HMM TIGR00029 gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2188 AFE_2189 AFE_2189 AFE_2189 1942226 1943239 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2189 AFE_2190 AFE_2190 AFE_2190 1943259 1944062 - ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2190 AFE_2191 AFE_2191 AFE_2191 1944076 1944291 + hypothetical protein identified by glimmer%3B putative gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2191 AFE_2192 AFE_2192 AFE_2192 1944279 1944716 + hypothetical protein identified by glimmer%3B putative gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2192 AFE_2193 AFE_2193 apaH apaH 1944720 1945559 + bis(5-nucleosyl)-tetraphosphatase (symmetrical) identified by match to protein family HMM PF00149 gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2193 AFE_2194 AFE_2194 recQ recQ 1945615 1947426 + ATP-dependent DNA helicase RecQ identified by similarity to SP:P15043%3B match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF00570%3B match to protein family HMM TIGR00614%3B match to protein family HMM TIGR01389 gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2194 AFE_2195 AFE_2195 cyaY cyaY 1947514 1947828 + cyaY protein identified by match to protein family HMM PF01491%3B match to protein family HMM TIGR03421 gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2195 AFE_2196 AFE_2196 AFE_2196 1947833 1948285 + conserved hypothetical protein identified by similarity to PIR:D75504%3B match to protein family HMM PF01878 gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2196 AFE_2197 AFE_2197 AFE_2197 1948351 1948776 - hypothetical protein identified by glimmer%3B putative gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2197 AFE_2198 AFE_2198 AFE_2198 1948275 1948373 + hypothetical protein identified by glimmer%3B putative gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2198 AFE_2199 AFE_2199 AFE_2199 1948739 1949812 - YjgP/YjgQ family protein identified by match to protein family HMM PF03739 gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2199 AFE_2200 AFE_2200 AFE_2200 1949809 1950930 - YjgP/YjgQ family protein identified by match to protein family HMM PF03739 gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2200 AFE_2201 AFE_2201 pepA pepA 1951047 1952549 + cytosol aminopeptidase identified by similarity to SP:P11648%3B match to protein family HMM PF00883%3B match to protein family HMM PF02789 gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2201 AFE_2202 AFE_2202 AFE_2202 1952940 1953743 - hypothetical protein identified by glimmer%3B putative gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2202 AFE_2203 AFE_2203 holC holC 1952562 1952987 + DNA polymerase III%2C chi subunit identified by similarity to SP:P28905%3B match to protein family HMM PF04364 gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2203 AFE_2204 AFE_2204 valS valS 1953693 1956509 + valyl-tRNA synthetase identified by similarity to SP:P07118%3B match to protein family HMM PF00133%3B match to protein family HMM PF08264%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00422 gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2204 AFE_2205 AFE_2205 nhaA nhaA 1956585 1957895 + Na+/H+ antiporter NhaA identified by match to protein family HMM PF06965%3B match to protein family HMM TIGR00773 gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2205 AFE_2206 AFE_2206 nadC nadC 1957892 1958719 + nicotinate-nucleotide pyrophosphorylase identified by similarity to SP:P30011%3B match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR00078 gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2206 AFE_2207 AFE_2207 AFE_2207 1958732 1959976 - hypothetical protein identified by glimmer%3B putative gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2207 AFE_2208 AFE_2208 AFE_2208 1960736 1960855 - hypothetical protein identified by glimmer%3B putative gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2208 AFE_2209 AFE_2209 AFE_2209 1960136 1960750 + transcriptional regulator%2C TetR family identified by match to protein family HMM PF00440 gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2209 AFE_2210 AFE_2210 AFE_2210 1960842 1961570 + carboxymethylenebutenolidase family protein identified by match to protein family HMM PF01738%3B match to protein family HMM PF08840 gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2210 AFE_2211 AFE_2211 AFE_2211 1961567 1962643 + oxidoreductase%2C FAD/FMN-binding identified by match to protein family HMM PF00724 gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2211 AFE_2212 AFE_2212 AFE_2212 1962726 1963352 - conserved hypothetical protein identified by similarity to GB:AAM38230.1 gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2212 AFE_2213 AFE_2213 AFE_2213 1963406 1963492 + tRNA-Leu tRNA gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2213 AFE_2214 AFE_2214 AFE_2214 1963560 1964126 + conserved hypothetical protein identified by similarity to GB:AAM40463.1%3B match to protein family HMM PF05656 gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2214 AFE_2215 AFE_2215 AFE_2215 1964159 1964953 + methyltransferase%2C FkbM family identified by match to protein family HMM TIGR01444 gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2215 AFE_2216 AFE_2216 AFE_2216 1965956 1966525 - conserved hypothetical protein identified by match to protein family HMM PF04140 gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2216 AFE_2217 AFE_2217 AFE_2217 1965070 1965963 + hydrolase%2C alpha/beta hydrolase fold family identified by match to protein family HMM PF00561 gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2217 AFE_2218 AFE_2218 AFE_2218 1966631 1967314 - HAD-superfamily hydrolase%2C subfamily IA identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2218 AFE_2219 AFE_2219 rluC rluC 1967311 1968264 - ribosomal large subunit pseudouridine synthase C identified by similarity to SP:P23851%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2219 AFE_2220 AFE_2220 AFE_2220 1968461 1970809 + ribonuclease%2C Rne/Rng family identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00757 gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2220 AFE_2221 AFE_2221 cysS cysS 1970852 1972240 - cysteinyl-tRNA synthetase identified by similarity to SP:P21888%3B match to protein family HMM PF01406%3B match to protein family HMM PF09190%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00435 gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2221 AFE_2222 AFE_2222 gltX-1 gltX-1 1972237 1973763 - glutamyl-tRNA synthetase identified by similarity to SP:P22250%3B match to protein family HMM PF00749%3B match to protein family HMM TIGR00464 gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2222 AFE_2223 AFE_2223 AFE_2223 1973783 1976272 + penicillin-binding protein 1A%2C putative identified by similarity to SP:P31776%3B match to protein family HMM PF00905%3B match to protein family HMM PF00912 gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2223 AFE_2224 AFE_2224 AFE_2224 1976273 1978633 + glycosyl hydrolase%2C family 15 identified by match to protein family HMM PF00723%3B match to protein family HMM PF09137 gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2224 AFE_2225 AFE_2225 AFE_2225 1978630 1979415 + glucose 1-dehydrogenase%2C putative identified by similarity to SP:P39482%3B match to protein family HMM PF00106%3B match to protein family HMM PF08659 gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2225 AFE_2226 AFE_2226 AFE_2226 1979574 1981256 + conserved domain protein identified by match to protein family HMM PF01636 gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2226 AFE_2227 AFE_2227 AFE_2227 1981381 1982007 + HAD-superfamily hydrolase%2C subfamily IA identified by match to protein family HMM PF00702 gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2227 AFE_2228 AFE_2228 kdpE kdpE 1982060 1982803 - DNA-binding response regulator KdpE identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2228 AFE_2229 AFE_2229 kdpD kdpD 1982807 1985548 - sensor histidine kinase KdpD identified by similarity to SP:P21865%3B match to protein family HMM PF00512%3B match to protein family HMM PF00582%3B match to protein family HMM PF02518%3B match to protein family HMM PF02702 gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2229 AFE_2230 AFE_2230 AFE_2230 1985780 1985914 + hypothetical protein identified by glimmer%3B putative gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2230 AFE_2231 AFE_2231 kdpF-2 kdpF-2 1985911 1986003 + K+-transporting ATPase%2C F subunit identified by match to protein family HMM TIGR02115 gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2231 AFE_2232 AFE_2232 kdpA-3 kdpA-3 1986000 1987751 + K+-transporting ATPase%2C A subunit identified by match to protein family HMM PF03814%3B match to protein family HMM TIGR00680 gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2232 AFE_2233 AFE_2233 kdpB-2 kdpB-2 1987764 1989833 + K+-transporting ATPase%2C B subunit identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01497 gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2233 AFE_2234 AFE_2234 kdpC-2 kdpC-2 1989846 1990466 + K+-transporting ATPase%2C C subunit identified by match to protein family HMM PF02669%3B match to protein family HMM TIGR00681 gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2234 AFE_2235 AFE_2235 AFE_2235 1990514 1990780 + hypothetical protein identified by glimmer%3B putative gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2235 AFE_2236 AFE_2236 AFE_2236 1990832 1990930 + hypothetical protein identified by glimmer%3B putative gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2236 AFE_2237 AFE_2237 AFE_2237 1991495 1991758 - hypothetical protein identified by glimmer%3B putative gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2237 AFE_2238 AFE_2238 AFE_2238 1990978 1991508 + amino acid kinase family protein identified by match to protein family HMM PF00696 gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2238 AFE_2239 AFE_2239 AFE_2239 1991751 1992794 + hypothetical protein identified by glimmer%3B putative gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2239 AFE_2240 AFE_2240 glnK-2 glnK-2 1992850 1993248 + nitrogen regulatory protein P-II 2 identified by similarity to SP:P38504%3B match to protein family HMM PF00543 gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2240 AFE_2241 AFE_2241 AFE_2241 1993245 1993544 + hypothetical protein identified by glimmer%3B putative gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2241 AFE_2242 AFE_2242 AFE_2242 1993603 1993962 + hypothetical protein identified by glimmer%3B putative gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2242 AFE_2243 AFE_2243 AFE_2243 1993972 1994064 + hypothetical protein identified by glimmer%3B putative gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2243 AFE_2244 AFE_2244 AFE_2244 1994243 1994515 + hypothetical protein identified by glimmer%3B putative gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2244 AFE_2245 AFE_2245 AFE_2245 1994717 1995910 + Na+/H+ antiporter%2C putative identified by match to protein family HMM PF00999 gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2245 AFE_2246 AFE_2246 AFE_2246 1996167 1996772 - dsbG domain protein identified by similarity to SP:P77202 gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2246 AFE_2247 AFE_2247 AFE_2247 1996010 1996174 + hypothetical protein identified by glimmer%3B putative gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2247 AFE_2248 AFE_2248 AFE_2248 1996887 1997327 - lipoprotein%2C putative gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2248 AFE_2249 AFE_2249 AFE_2249 1997133 1997552 + hypothetical protein identified by glimmer%3B putative gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2249 AFE_2250 AFE_2250 AFE_2250 1997955 1999076 - carbohydrate-selective porin%2C OprB family identified by match to protein family HMM PF04966 gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2250 AFE_2251 AFE_2251 AFE_2251 1999089 2000276 - PQQ enzyme repeat domain protein identified by similarity to SP:P54741 gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2251 AFE_2252 AFE_2252 AFE_2252 2000631 2001302 + Tat (twin-arginine translocation) pathway signal sequence domain protein identified by match to protein family HMM TIGR01409 gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2252 AFE_2253 AFE_2253 AFE_2253 2001409 2006118 + conserved hypothetical protein identified by similarity to GB:BAB48985.1%3B match to protein family HMM PF00515%3B match to protein family HMM PF01835%3B match to protein family HMM PF07703 gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2253 AFE_2254 AFE_2254 AFE_2254 2006126 2008192 + penicillin-binding protein 1C%2C putative identified by similarity to SP:P76577%3B match to protein family HMM PF00905%3B match to protein family HMM PF00912 gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2254 AFE_2255 AFE_2255 AFE_2255 2008488 2008829 - hypothetical protein identified by glimmer%3B putative gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2255 AFE_2256 AFE_2256 AFE_2256 2008854 2009645 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2256 AFE_2257 AFE_2257 AFE_2257 2009789 2010544 - conserved hypothetical protein gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2257 AFE_2258 AFE_2258 AFE_2258 2010545 2011435 - membrane protein%2C putative identified by match to protein family HMM PF01925 gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2258 AFE_2259 AFE_2259 AFE_2259 2011464 2011997 - universal stress family protein identified by match to protein family HMM PF00582 gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2259 AFE_2260 AFE_2260 purH purH 2012238 2013812 + phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase identified by similarity to SP:P15639%3B match to protein family HMM PF01808%3B match to protein family HMM PF02142%3B match to protein family HMM TIGR00355 gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2260 AFE_2261 AFE_2261 purD purD 2013826 2015088 + phosphoribosylamine--glycine ligase identified by similarity to SP:P15640%3B match to protein family HMM PF01071%3B match to protein family HMM PF02843%3B match to protein family HMM PF02844%3B match to protein family HMM TIGR00877 gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2261 AFE_2262 AFE_2262 AFE_2262 2015104 2015664 + Sua5/YciO/YrdC family protein identified by match to protein family HMM PF01300 gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2262 AFE_2263 AFE_2263 hemF hemF 2015669 2016559 + coproporphyrinogen III oxidase%2C aerobic identified by similarity to SP:P36553%3B match to protein family HMM PF01218 gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2263 AFE_2264 AFE_2264 pyrD pyrD 2016556 2017647 + dihydroorotate dehydrogenase identified by similarity to SP:P05021%3B match to protein family HMM PF01180%3B match to protein family HMM TIGR01036 gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2264 AFE_2265 AFE_2265 AFE_2265 2017807 2017956 + lipoprotein%2C putative gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2265 AFE_2266 AFE_2266 AFE_2266 2018240 2018821 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2266 AFE_2267 AFE_2267 AFE_2267 2018825 2020396 - phosphoesterase family protein identified by match to protein family HMM PF04185%3B match to protein family HMM TIGR01409 gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2267 AFE_2268 AFE_2268 AFE_2268 2020456 2021169 - TonB family protein identified by match to protein family HMM TIGR01352 gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2268 AFE_2269 AFE_2269 AFE_2269 2021191 2021592 - biopolymer transport protein%2C ExbD/TolR family identified by match to protein family HMM PF02472 gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2269 AFE_2270 AFE_2270 AFE_2270 2021592 2022275 - MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618 gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2270 AFE_2271 AFE_2271 AFE_2271 2022340 2023056 - transcriptional regulator%2C putative identified by match to protein family HMM PF00486 gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2271 AFE_2272 AFE_2272 AFE_2272 2023277 2023789 - hypothetical protein identified by glimmer%3B putative gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2272 AFE_2273 AFE_2273 AFE_2273 2024266 2024958 + MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618 gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2273 AFE_2274 AFE_2274 AFE_2274 2024992 2027880 + conserved hypothetical protein identified by similarity to PIR:AG1979%3B match to protein family HMM PF01436%3B match to protein family HMM PF08450 gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2274 AFE_2275 AFE_2275 AFE_2275 2027955 2028683 + TonB family protein identified by match to protein family HMM TIGR01352 gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2275 AFE_2276 AFE_2276 AFE_2276 2028722 2029321 + conserved hypothetical protein identified by similarity to PIR:D83296%3B match to protein family HMM TIGR03276 gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2276 AFE_2277 AFE_2277 AFE_2277 2029360 2030757 + major facilitator family transporter identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2277 AFE_2278 AFE_2278 phnG phnG 2030857 2031333 + phosphonate metabolism protein PhnG identified by similarity to SP:P16685%3B match to protein family HMM TIGR03293 gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2278 AFE_2279 AFE_2279 phnH phnH 2031330 2031872 + phosphonate metabolism protein phnH identified by similarity to SP:P16686 gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2279 AFE_2280 AFE_2280 phnI phnI 2031876 2032973 + phosphonate metabolism protein PhnI identified by similarity to SP:P16687%3B match to protein family HMM PF05861 gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2280 AFE_2281 AFE_2281 phnJ phnJ 2032970 2033794 + phosphonate metabolism protein PhnJ identified by similarity to SP:P16688%3B match to protein family HMM PF06007 gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2281 AFE_2282 AFE_2282 phnK phnK 2033791 2034573 + phosphonate ABC transporter%2C ATP-binding protein PhnK identified by similarity to SP:P16678%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02323 gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2282 AFE_2283 AFE_2283 phnL phnL 2034570 2035268 + phosphonate ABC transporter%2C ATP-binding protein PhnL identified by similarity to SP:P16679%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02324 gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2283 AFE_2284 AFE_2284 AFE_2284 2035265 2036401 + phnM protein%2C putative identified by similarity to SP:P16689%3B match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR02318 gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2284 AFE_2285 AFE_2285 AFE_2285 2036409 2037086 + conserved hypothetical protein identified by similarity to GB:BAB51509.1%3B match to protein family HMM PF06299%3B match to protein family HMM TIGR03223 gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2285 AFE_2286 AFE_2286 AFE_2286 2037079 2037624 + PhnN protein%2C putative identified by similarity to SP:P16690 gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2286 AFE_2287 AFE_2287 AFE_2287 2037621 2038373 + transcriptional regulator%2C GntR family identified by match to protein family HMM PF00392%3B match to protein family HMM TIGR02325 gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2287 AFE_2288 AFE_2288 AFE_2288 2038483 2040813 - TonB-dependent receptor identified by match to protein family HMM PF00593 gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2288 AFE_2289 AFE_2289 AFE_2289 2040891 2041408 - phospholipase C%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P15713 pseudogene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2289 AFE_2290 AFE_2290 AFE_2290 2041035 2041256 + hypothetical protein identified by glimmer%3B putative gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2290 AFE_2291 AFE_2291 AFE_2291 2041394 2041534 + hypothetical protein identified by glimmer%3B putative gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2291 AFE_2292 AFE_2292 AFE_2292 2041664 2043985 - TonB-dependent receptor identified by match to protein family HMM PF00593 gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2292 AFE_2293 AFE_2293 AFE_2293 2044258 2044377 - hypothetical protein identified by glimmer%3B putative gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2293 AFE_2294 AFE_2294 AFE_2294 2044381 2044873 + ABC transporter%2C ATP-binding protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAP29241.1 pseudogene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2294 AFE_2295 AFE_2295 AFE_2295 2044926 2045183 + conserved hypothetical protein identified by similarity to SP:Q8CSV0 gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2295 AFE_2296 AFE_2296 AFE_2296 2045521 2045832 + conserved domain protein identified by similarity to GB:CAD64331.1 gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2296 AFE_2297 AFE_2297 AFE_2297 2046144 2046842 + phosphoesterase family protein identified by match to protein family HMM PF04185%3B match to protein family HMM TIGR01409 gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2297 AFE_2298 AFE_2298 AFE_2298 2046937 2049144 + TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2298 AFE_2299 AFE_2299 AFE_2299 2049200 2049877 + MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618 gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2299 AFE_2300 AFE_2300 AFE_2300 2049895 2050269 + biopolymer transport protein%2C ExbD/TolR family identified by match to protein family HMM PF02472 gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2300 AFE_2301 AFE_2301 AFE_2301 2050275 2051003 + TonB family protein identified by match to protein family HMM PF03544%3B match to protein family HMM TIGR01352 gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2301 AFE_2302 AFE_2302 AFE_2302 2051024 2053240 + TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2302 AFE_2303 AFE_2303 AFE_2303 2053341 2056178 + conserved hypothetical protein identified by similarity to PIR:AG1979 gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2303 AFE_2304 AFE_2304 AFE_2304 2056188 2056967 + TonB family protein identified by match to protein family HMM TIGR01352 gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2304 AFE_2305 AFE_2305 AFE_2305 2057004 2057399 + hypothetical protein identified by glimmer%3B putative gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2305 AFE_2306 AFE_2306 AFE_2306 2057410 2058177 - DNA-binding response regulator identified by match to protein family HMM PF00486 gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2306 AFE_2307 AFE_2307 AFE_2307 2058288 2058494 - conserved domain protein identified by similarity to GB:AAO90256.1 gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2307 AFE_2308 AFE_2308 AFE_2308 2058779 2058883 + hypothetical protein identified by glimmer%3B putative gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2308 AFE_2309 AFE_2309 AFE_2309 2058953 2060227 - hypothetical protein identified by glimmer%3B putative gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2309 AFE_2310 AFE_2310 AFE_2310 2060499 2060735 - transposase%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated pseudogene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2310 AFE_2311 AFE_2311 AFE_2311 2060307 2060588 + hypothetical protein identified by glimmer%3B putative gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2311 AFE_2312 AFE_2312 AFE_2312 2060969 2062327 - sugar transporter family protein identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00879 gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2312 AFE_2313 AFE_2313 AFE_2313 2062633 2062989 - hypothetical protein identified by glimmer%3B putative gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2313 AFE_2314 AFE_2314 sixA sixA 2063000 2063482 - phosphohistidine phosphatase SixA identified by match to protein family HMM PF00300%3B match to protein family HMM TIGR00249 gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2314 AFE_2315 AFE_2315 AFE_2315 2063586 2063674 - tRNA-Leu tRNA gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2315 AFE_2316 AFE_2316 AFE_2316 2063766 2064302 - outer membrane lipoprotein Slp%2C putative identified by similarity to SP:P37194%3B match to protein family HMM PF03843 gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2316 AFE_2317 AFE_2317 AFE_2317 2064299 2064409 - hypothetical protein identified by glimmer%3B putative gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2317 AFE_2318 AFE_2318 AFE_2318 2064419 2065690 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2318 AFE_2319 AFE_2319 AFE_2319 2065711 2066391 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2319 AFE_2320 AFE_2320 orn orn 2066964 2067548 + oligoribonuclease Orn identified by similarity to SP:P39287%3B match to protein family HMM PF00929 gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2320 AFE_2321 AFE_2321 AFE_2321 2067695 2068783 + monooxygenase%2C luciferase-like protein identified by match to protein family HMM PF00296 gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2321 AFE_2322 AFE_2322 AFE_2322 2068789 2069745 + conserved hypothetical protein identified by similarity to SP:Q11166%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370 gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2322 AFE_2323 AFE_2323 AFE_2323 2069767 2070657 + conserved hypothetical protein identified by similarity to PIR:T35630 gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2323 AFE_2324 AFE_2324 AFE_2324 2070717 2072348 + phosphoglucomutase%2C putative identified by similarity to SP:P39671%3B match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880 gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2324 AFE_2325 AFE_2325 AFE_2325 2072364 2072726 + hypothetical protein identified by glimmer%3B putative gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2325 AFE_2326 AFE_2326 AFE_2326 2072761 2072837 + tRNA-Pro tRNA gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2326 AFE_2327 AFE_2327 AFE_2327 2072856 2075399 + magnesium-translocating P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01524 gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2327 AFE_2328 AFE_2328 AFE_2328 2075657 2076247 + cytochrome b561 family protein identified by similarity to SP:P75925%3B match to protein family HMM PF01292 gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2328 AFE_2329 AFE_2329 AFE_2329 2076516 2076887 + hypothetical protein identified by glimmer%3B putative gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2329 AFE_2330 AFE_2330 AFE_2330 2076987 2077781 + membrane protein%2C putative identified by match to protein family HMM PF03988 gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2330 AFE_2331 AFE_2331 AFE_2331 2077902 2078003 + hypothetical protein identified by glimmer%3B putative gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2331 AFE_2332 AFE_2332 AFE_2332 2079380 2080306 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2332 AFE_2333 AFE_2333 AFE_2333 2078182 2079498 + major facilitator family transporter identified by match to protein family HMM PF07690 gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2333 AFE_2334 AFE_2334 AFE_2334 2080435 2080641 - hypothetical protein identified by glimmer%3B putative gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2334 AFE_2335 AFE_2335 AFE_2335 2080728 2080804 - tRNA-Met tRNA gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2335 AFE_2336 AFE_2336 rpoD rpoD 2080861 2082735 - RNA polymerase sigma factor RpoD identified by similarity to SP:P00579%3B match to protein family HMM PF00140%3B match to protein family HMM PF03979%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF04546%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937 gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2336 AFE_2337 AFE_2337 dnaG dnaG 2082858 2084609 - DNA primase identified by similarity to SP:O33470%3B match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM PF08275%3B match to protein family HMM TIGR01391 gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2337 AFE_2338 AFE_2338 AFE_2338 2084613 2086937 - MutS2 family protein identified by match to protein family HMM PF00488%3B match to protein family HMM PF01713 gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2338 AFE_2339 AFE_2339 AFE_2339 2086949 2087395 - GatB/Yqey domain protein identified by match to protein family HMM PF02637 gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2339 AFE_2340 AFE_2340 rpsU rpsU 2087395 2087610 - ribosomal protein S21 identified by similarity to SP:P02379%3B match to protein family HMM PF01165%3B match to protein family HMM TIGR00030 gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2340 AFE_2341 AFE_2341 rdgB rdgB 2088723 2089346 - non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family identified by match to protein family HMM PF01725%3B match to protein family HMM TIGR00042 gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2341 AFE_2342 AFE_2342 AFE_2342 2087899 2088756 + RNA polymerase sigm-70 factor family identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF08281%3B match to protein family HMM TIGR02937 gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2342 AFE_2343 AFE_2343 rph rph 2089343 2090071 - ribonuclease PH identified by match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM TIGR01966 gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2343 AFE_2344 AFE_2344 AFE_2344 2090211 2090705 + cyclic nucleotide-binding domain protein identified by match to protein family HMM PF00027 gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2344 AFE_2345 AFE_2345 AFE_2345 2090732 2091289 - ATP-dependent protease La domain protein identified by similarity to GB:AAN70383.1%3B match to protein family HMM PF02190 gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2345 AFE_2346 AFE_2346 AFE_2346 2091314 2092471 + oxygen-independent coproporphyrinogen III oxidase%2C putative identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00539 gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2346 AFE_2347 AFE_2347 AFE_2347 2092486 2092797 - conserved hypothetical protein identified by similarity to GB:AAO90176.1 gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2347 AFE_2348 AFE_2348 AFE_2348 2092821 2093615 + RNA pseudouridine synthase family protein identified by similarity to SP:P37765%3B match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2348 AFE_2349 AFE_2349 AFE_2349 2093965 2095650 + multidrug resistance protein identified by similarity to SP:P27304%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00711 gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2349 AFE_2350 AFE_2350 AFE_2350 2095660 2096631 - D-alanyl-D-alanine carboxypeptidase%2C putative identified by similarity to SP:P08506%3B match to protein family HMM PF00768 gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2350 AFE_2351 AFE_2351 AFE_2351 2096781 2097542 + membrane protein%2C putative identified by match to protein family HMM PF01925 gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2351 AFE_2352 AFE_2352 AFE_2352 2097558 2098565 + conserved hypothetical protein identified by similarity to GB:BAC47910.1%3B match to protein family HMM PF00891%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2352 AFE_2353 AFE_2353 AFE_2353 2098636 2098713 + tRNA-Ala tRNA gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2353 AFE_2354 AFE_2354 purL purL 2098914 2102765 - phosphoribosylformylglycinamidine synthase identified by similarity to SP:P15254%3B match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR01735 gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2354 AFE_2355 AFE_2355 purC purC 2102836 2103558 - phosphoribosylaminoimidazole-succinocarboxamide synthase identified by match to protein family HMM PF01259%3B match to protein family HMM TIGR00081 gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2355 AFE_2356 AFE_2356 purB purB 2103555 2104862 - adenylosuccinate lyase identified by similarity to SP:P12047%3B match to protein family HMM PF00206%3B match to protein family HMM TIGR00928 gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2356 AFE_2357 AFE_2357 AFE_2357 2104859 2105992 - lipoprotein%2C putative gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2357 AFE_2358 AFE_2358 dapA dapA 2106030 2106905 - dihydrodipicolinate synthase identified by similarity to SP:P05640%3B match to protein family HMM PF00701%3B match to protein family HMM TIGR00674 gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2358 AFE_2359 AFE_2359 AFE_2359 2107046 2107123 - tRNA-Glu tRNA gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2359 AFE_2360 AFE_2360 AFE_2360 2107178 2107831 - channel protein%2C hemolysin III family identified by similarity to SP:P54176%3B match to protein family HMM PF03006%3B match to protein family HMM TIGR01065 gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2360 AFE_2361 AFE_2361 AFE_2361 2107906 2109234 - N-acetylmuramoyl-L-alanine amidase%2C putative identified by similarity to SP:Q46929%3B match to protein family HMM PF01476%3B match to protein family HMM PF01520%3B match to protein family HMM TIGR01409 gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2361 AFE_2362 AFE_2362 AFE_2362 2109320 2109754 - thioredoxin identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2362 AFE_2363 AFE_2363 grxC grxC 2109785 2110069 - glutaredoxin 3 identified by similarity to SP:P37687%3B match to protein family HMM PF00462%3B match to protein family HMM TIGR02181 gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2363 AFE_2364 AFE_2364 AFE_2364 2110069 2110494 - rhodanese-like domain protein identified by match to protein family HMM PF00581 gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2364 AFE_2365 AFE_2365 AFE_2365 2110498 2110719 - conserved hypothetical protein identified by similarity to GB:AAN56110.1 gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2365 AFE_2366 AFE_2366 AFE_2366 2110726 2114004 - transporter%2C AcrB/AcrD/AcrF family identified by match to protein family HMM PF00873 gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2366 AFE_2367 AFE_2367 AFE_2367 2113997 2115079 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2367 AFE_2368 AFE_2368 AFE_2368 2115076 2116497 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2368 AFE_2369 AFE_2369 AFE_2369 2116745 2117047 - transcriptional regulator%2C ArsR family identified by match to protein family HMM PF01022 gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2369 AFE_2370 AFE_2370 AFE_2370 2117160 2117235 + tRNA-Gly tRNA gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2370 AFE_2371 AFE_2371 AFE_2371 2117462 2117701 - hypothetical protein identified by glimmer%3B putative gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2371 AFE_2372 AFE_2372 AFE_2372 2117769 2119382 - type I restriction-modification system%2C M subunit identified by match to protein family HMM PF02384%3B match to protein family HMM TIGR00497 gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2372 AFE_2373 AFE_2373 AFE_2373 2119379 2119582 - hypothetical protein identified by glimmer%3B putative gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2373 AFE_2374 AFE_2374 AFE_2374 2119579 2120757 - anticodon nuclease%2C putative identified by similarity to SP:P17223 gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2374 AFE_2375 AFE_2375 AFE_2375 2120849 2124013 - ATP-dependent helicase%2C DEAD/DEAH box family identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2375 AFE_2376 AFE_2376 AFE_2376 2120710 2120871 + hypothetical protein identified by glimmer%3B putative gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2376 AFE_2377 AFE_2377 AFE_2377 2124010 2124798 - hypothetical protein identified by glimmer%3B putative gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2377 AFE_2378 AFE_2378 AFE_2378 2124795 2125946 - type I restriction-modification system%2C S subunit identified by match to protein family HMM PF01420 gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2378 AFE_2379 AFE_2379 AFE_2379 2126024 2126221 + hypothetical protein identified by glimmer%3B putative gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2379 AFE_2380 AFE_2380 AFE_2380 2126416 2127030 - conserved domain protein identified by similarity to GB:AAO78433.1 gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2380 AFE_2381 AFE_2381 AFE_2381 2127023 2130121 - type I restriction-modification system%2C R subunit identified by match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00348 gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2381 AFE_2382 AFE_2382 AFE_2382 2130200 2130337 + hypothetical protein identified by glimmer%3B putative gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2382 AFE_2383 AFE_2383 ubiD ubiD 2130414 2131886 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified by similarity to SP:P26615%3B match to protein family HMM PF01977%3B match to protein family HMM TIGR00148 gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2383 AFE_2384 AFE_2384 AFE_2384 2131911 2132783 - conserved hypothetical protein identified by similarity to PIR:A82245 gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2384 AFE_2385 AFE_2385 AFE_2385 2132796 2133239 - SCP-2 sterol transfer family protein identified by match to protein family HMM PF02036 gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2385 AFE_2386 AFE_2386 AFE_2386 2133299 2134045 - HesA/MoeB/ThiF family protein identified by match to protein family HMM PF00899 gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2386 AFE_2387 AFE_2387 AFE_2387 2134045 2134815 - hydrolase%2C TatD family identified by match to protein family HMM PF01026 gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2387 AFE_2388 AFE_2388 ubiH-2 ubiH-2 2134993 2136222 + 2-octaprenyl-6-methoxyphenol hydroxylase identified by similarity to SP:P25534%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01988 gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2388 AFE_2389 AFE_2389 ubiH-1 ubiH-1 2136212 2137399 + 2-octaprenyl-6-methoxyphenol hydroxylase identified by similarity to SP:P25534%3B match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01988 gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2389 AFE_2390 AFE_2390 AFE_2390 2137411 2137674 + conserved hypothetical protein identified by similarity to GB:AAQ61663.1 gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2390 AFE_2391 AFE_2391 AFE_2391 2137678 2138569 + competence protein ComM%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:P45049 pseudogene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2391 AFE_2392 AFE_2392 AFE_2392 2138641 2140485 + hypothetical protein identified by glimmer%3B putative gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2392 AFE_2393 AFE_2393 AFE_2393 2140693 2141148 + ISAfe5%2C transposase orfA identified by similarity to GB:AAB81643.1 gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2393 AFE_2394 AFE_2394 AFE_2394 2141283 2141633 + ISAfe5%2C transposase orfB identified by similarity to GB:AAB81642.1 gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2394 AFE_2395 AFE_2395 AFE_2395 2142272 2143731 + reverse transcriptase%2C putative%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:Q47688 pseudogene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2395 AFE_2396 AFE_2396 AFE_2396 2143755 2143934 - hypothetical protein identified by glimmer%3B putative gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2396 AFE_2397 AFE_2397 AFE_2397 2144157 2145401 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2397 AFE_2398 AFE_2398 AFE_2398 2145398 2146339 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2398 AFE_2399 AFE_2399 AFE_2399 2146332 2147330 + site-specific recombinase%2C phage integrase family identified by match to protein family HMM PF00589 gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2399 AFE_2400 AFE_2400 AFE_2400 2147405 2148265 - hypothetical protein identified by glimmer%3B putative gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2400 AFE_2401 AFE_2401 AFE_2401 2148399 2148947 - hypothetical protein identified by glimmer%3B putative gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2401 AFE_2402 AFE_2402 AFE_2402 2148975 2149082 + hypothetical protein identified by glimmer%3B putative gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2402 AFE_2403 AFE_2403 AFE_2403 2149089 2150077 - conserved hypothetical protein%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated pseudogene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2403 AFE_2404 AFE_2404 AFE_2404 2151591 2151965 - transposase%2C degenerate identified by similarity to SP:P37246 gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2404 AFE_2405 AFE_2405 AFE_2405 2150798 2151298 + hypothetical protein identified by glimmer%3B putative gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2405 AFE_2406 AFE_2406 AFE_2406 2152275 2152379 - hypothetical protein identified by glimmer%3B putative gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2406 AFE_2407 AFE_2407 AFE_2407 2152967 2154262 + conserved hypothetical protein identified by similarity to GB:AAN30751.1 gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2407 AFE_2408 AFE_2408 AFE_2408 2154272 2156701 + DEAD/DEAH box helicase%2C putative identified by match to protein family HMM PF00270%3B match to protein family HMM PF01896%3B match to protein family HMM PF04851 gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2408 AFE_2409 AFE_2409 AFE_2409 2156858 2157097 - hypothetical protein identified by glimmer%3B putative gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2409 AFE_2410 AFE_2410 AFE_2410 2157238 2157735 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2410 AFE_2411 AFE_2411 AFE_2411 2157957 2158433 - NADH-quinone oxidoreductase%2C B subunit identified by match to protein family HMM PF01058%3B match to protein family HMM TIGR01957 gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2411 AFE_2412 AFE_2412 AFE_2412 2158510 2160636 - phosphoenolpyruvate-utilizing enzyme mobile domain protein identified by match to protein family HMM PF00391 gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2412 AFE_2413 AFE_2413 AFE_2413 2160776 2161438 - transposase%2C degenerate identified by match to protein family HMM PF01695 gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2413 AFE_2414 AFE_2414 AFE_2414 2161717 2161998 + conserved hypothetical protein identified by similarity to GB:AAN70104.1%3B match to protein family HMM PF04365 gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2414 AFE_2415 AFE_2415 AFE_2415 2161995 2162237 + conserved hypothetical protein identified by similarity to GB:AAO89577.1 gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2415 AFE_2416 AFE_2416 AFE_2416 2163160 2163294 + hypothetical protein identified by glimmer%3B putative gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2416 AFE_2417 AFE_2417 AFE_2417 2163294 2164091 + hypothetical protein identified by glimmer%3B putative gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2417 AFE_2418 AFE_2418 AFE_2418 2164442 2164576 + hypothetical protein identified by glimmer%3B putative gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2418 AFE_2419 AFE_2419 AFE_2419 2164763 2166238 - plasmid recombination enzyme%2C putative identified by match to protein family HMM PF01076 gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2419 AFE_2420 AFE_2420 AFE_2420 2166470 2167471 - cation diffusion facilitator family transporter identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2420 AFE_2421 AFE_2421 AFE_2421 2167571 2168047 + Cd(II)/Pb(II)-responsive transcriptional regulator identified by match to protein family HMM PF00376%3B match to protein family HMM PF09278%3B match to protein family HMM TIGR02047 gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2421 AFE_2422 AFE_2422 AFE_2422 2168060 2168644 - conserved domain protein identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2422 AFE_2423 AFE_2423 AFE_2423 2168727 2169218 - ATP synthase F1%2C epsilon subunit%2C putative identified by match to protein family HMM PF00401%3B match to protein family HMM PF02823%3B match to protein family HMM TIGR01216 gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2423 AFE_2424 AFE_2424 AFE_2424 2169343 2169969 - cation efflux permease%2C putative identified by match to protein family HMM PF01545 gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2424 AFE_2425 AFE_2425 AFE_2425 2170031 2170357 + hypothetical protein identified by glimmer%3B putative gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2425 AFE_2426 AFE_2426 AFE_2426 2170506 2170607 - hypothetical protein identified by glimmer%3B putative gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2426 AFE_2427 AFE_2427 AFE_2427 2170663 2170827 - hypothetical protein identified by glimmer%3B putative gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2427 AFE_2428 AFE_2428 AFE_2428 2170930 2171292 - heavy metal efflux system protein%2C putative identified by similarity to SP:P77214 gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2428 AFE_2429 AFE_2429 AFE_2429 2171421 2172176 - [Ni/Fe] hydrogenase%2C b-type cytochrome subunit%2C putative identified by match to protein family HMM PF01292 gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2429 AFE_2430 AFE_2430 AFE_2430 2172235 2172921 - conserved hypothetical protein identified by similarity to GB:BAB47830.1%3B match to protein family HMM PF01987 gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2430 AFE_2431 AFE_2431 AFE_2431 2172992 2176105 - heavy metal efflux pump%2C CzcA family identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00914 gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2431 AFE_2432 AFE_2432 AFE_2432 2176350 2177576 + ISAfe3%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2432 AFE_2433 AFE_2433 AFE_2433 2177651 2179099 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM TIGR01730 gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2433 AFE_2434 AFE_2434 AFE_2434 2179096 2180397 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2434 AFE_2435 AFE_2435 AFE_2435 2180499 2180849 - hypothetical protein identified by glimmer%3B putative gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2435 AFE_2436 AFE_2436 AFE_2436 2180921 2181112 - hypothetical protein identified by glimmer%3B putative gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2436 AFE_2437 AFE_2437 AFE_2437 2181098 2181352 + cyclopropane-fatty-acyl-phospholipid synthase domain protein identified by similarity to GB:AAN70930.1 gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2437 AFE_2438 AFE_2438 AFE_2438 2181531 2181815 + conserved hypothetical protein identified by similarity to GB:AAM25602.1 gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2438 AFE_2439 AFE_2439 AFE_2439 2181955 2183979 + copper-translocating P-type ATPase identified by similarity to SP:P05425%3B match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2439 AFE_2440 AFE_2440 AFE_2440 2184103 2184221 - mercuric reductase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts pseudogene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2440 AFE_2441 AFE_2441 AFE_2441 2184471 2184572 - hypothetical protein identified by glimmer%3B putative gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2441 AFE_2442 AFE_2442 AFE_2442 2184586 2184894 - hypothetical protein identified by glimmer%3B putative gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2442 AFE_2443 AFE_2443 AFE_2443 2185209 2185523 - transposase%2C degenerate gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2443 AFE_2444 AFE_2444 AFE_2444 2185425 2185814 + hypothetical protein identified by glimmer%3B putative gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2444 AFE_2445 AFE_2445 AFE_2445 2185790 2186071 + hypothetical protein identified by glimmer%3B putative gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2445 AFE_2446 AFE_2446 AFE_2446 2186709 2187680 + cation-transporting P-type ATPase%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to SP:P77894 pseudogene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2446 AFE_2447 AFE_2447 AFE_2447 2187708 2188103 + conserved hypothetical protein identified by similarity to GB:AAO07819.1%3B match to protein family HMM PF03625 gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2447 AFE_2448 AFE_2448 AFE_2448 2188165 2188371 + heavy metal-binding protein%2C putative identified by match to protein family HMM PF00403 gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2448 AFE_2449 AFE_2449 AFE_2449 2188376 2188615 + conserved hypothetical protein identified by similarity to PIR:B75601%3B match to protein family HMM PF00462%3B match to protein family HMM PF05768 gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2449 AFE_2450 AFE_2450 AFE_2450 2188760 2189062 + cytochrome c family protein identified by match to protein family HMM PF00034 gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2450 AFE_2451 AFE_2451 AFE_2451 2189251 2189424 - hypothetical protein identified by glimmer%3B putative gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2451 AFE_2452 AFE_2452 AFE_2452 2189108 2189254 + hypothetical protein identified by glimmer%3B putative gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2452 AFE_2453 AFE_2453 AFE_2453 2189464 2190373 - transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to GB:AAF65225.1 pseudogene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2453 AFE_2454 AFE_2454 AFE_2454 2190384 2191985 - Na+/H+ antiporter identified by match to protein family HMM PF00999%3B match to protein family HMM TIGR00831 gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2454 AFE_2455 AFE_2455 AFE_2455 2192106 2192372 - hypothetical protein identified by glimmer%3B putative gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2455 AFE_2456 AFE_2456 AFE_2456 2192726 2192824 - hypothetical protein identified by glimmer%3B putative gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2456 AFE_2457 AFE_2457 AFE_2457 2193131 2194750 - amino acid permease family protein identified by match to protein family HMM PF00324 gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2457 AFE_2458 AFE_2458 AFE_2458 2194775 2195188 - hypothetical protein identified by glimmer%3B putative gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2458 AFE_2459 AFE_2459 AFE_2459 2195260 2195619 - hypothetical protein identified by glimmer%3B putative gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2459 AFE_2460 AFE_2460 AFE_2460 2195178 2195324 + hypothetical protein identified by glimmer%3B putative gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2460 AFE_2461 AFE_2461 AFE_2461 2195678 2195977 - hypothetical protein identified by glimmer%3B putative gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2461 AFE_2462 AFE_2462 glnB-1 glnB-1 2195974 2196345 - nitrogen regulatory protein P-II 1 identified by similarity to SP:P05826%3B match to protein family HMM PF00543 gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2462 AFE_2463 AFE_2463 AFE_2463 2196403 2197593 - hypothetical protein identified by glimmer%3B putative gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2463 AFE_2464 AFE_2464 proB-1 proB-1 2197673 2198641 - glutamate 5-kinase identified by similarity to SP:P07005%3B match to protein family HMM PF00696%3B match to protein family HMM TIGR01027 gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2464 AFE_2465 AFE_2465 AFE_2465 2198706 2198888 - hypothetical protein identified by glimmer%3B putative gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2465 AFE_2466 AFE_2466 AFE_2466 2198825 2200381 - conserved hypothetical protein identified by match to protein family HMM PF08443 gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2466 AFE_2467 AFE_2467 AFE_2467 2200415 2200744 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2467 AFE_2468 AFE_2468 AFE_2468 2200795 2201127 + ISAfe4%2C tranposase orf1 Assignment based on BLAST search at the ISFinder database%2C and proximity to other transposase ORFs. gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2468 AFE_2469 AFE_2469 AFE_2469 2201118 2201465 + ISAfe4%2C transposase orf2 identified by match to protein family HMM PF05717 gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2469 AFE_2470 AFE_2470 AFE_2470 2201515 2203152 + ISAfe4%2C transposase orf3 identified by match to protein family HMM PF03050 gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2470 AFE_2471 AFE_2471 AFE_2471 2203665 2204243 - DNA-binding protein HU family protein identified by match to protein family HMM PF00216 gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2471 AFE_2472 AFE_2472 AFE_2472 2204258 2204776 - hypothetical protein identified by glimmer%3B putative gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2472 AFE_2473 AFE_2473 kdpC-1 kdpC-1 2204733 2205356 - K+-transporting ATPase%2C C subunit identified by similarity to SP:P03961%3B match to protein family HMM PF02669%3B match to protein family HMM TIGR00681 gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2473 AFE_2474 AFE_2474 kdpB-1 kdpB-1 2205369 2207438 - K+-transporting ATPase%2C B subunit identified by similarity to SP:P03960%3B match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01497 gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2474 AFE_2475 AFE_2475 kdpA-2 kdpA-2 2207452 2209203 - K+-transporting ATPase%2C A subunit identified by similarity to SP:P03959%3B match to protein family HMM PF03814%3B match to protein family HMM TIGR00680 gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2475 AFE_2476 AFE_2476 kdpF-1 kdpF-1 2209200 2209292 - K+-transporting ATPase%2C F subunit identified by match to protein family HMM TIGR02115 gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2476 AFE_2477 AFE_2477 kdpA-1 kdpA-1 2209589 2211340 - K+-transporting ATPase%2C A subunit identified by similarity to SP:P03959%3B match to protein family HMM PF03814%3B match to protein family HMM TIGR00680 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2477 AFE_2478 AFE_2478 AFE_2478 2211614 2211784 - hypothetical protein identified by glimmer%3B putative gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2478 AFE_2479 AFE_2479 AFE_2479 2211745 2211968 + mercuric resistance protein merE%2C putative%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2479 AFE_2480 AFE_2480 merC merC 2212065 2212499 + mercuric resistance protein MerC identified by similarity to SP:P22905%3B match to protein family HMM PF03203 gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2480 AFE_2481 AFE_2481 merA merA 2212525 2214168 + mercuric reductase identified by similarity to SP:P17239%3B match to protein family HMM PF00070%3B match to protein family HMM PF00403%3B match to protein family HMM PF01266%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR02053 gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2481 AFE_2482 AFE_2482 cga cga 2214225 2216270 + glucan 1%2C4-alpha-glucosidase identified by match to protein family HMM PF00723%3B match to protein family HMM PF09137 gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2482 AFE_2483 AFE_2483 AFE_2483 2216273 2216634 + mercuric resistence transcriptional repressor protein MerD%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to SP:P06689 pseudogene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2483 AFE_2484 AFE_2484 AFE_2484 2216995 2217240 + hypothetical protein identified by glimmer%3B putative gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2484 AFE_2485 AFE_2485 AFE_2485 2217265 2217444 + transposase%2C degenerate gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2485 AFE_2486 AFE_2486 AFE_2486 2217632 2218063 - hypothetical protein identified by glimmer%3B putative gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2486 AFE_2487 AFE_2487 AFE_2487 2218065 2218391 - hypothetical protein identified by glimmer%3B putative gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2487 AFE_2488 AFE_2488 AFE_2488 2218391 2218672 - hypothetical protein identified by glimmer%3B putative gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2488 AFE_2489 AFE_2489 AFE_2489 2218923 2219186 + hypothetical protein identified by glimmer%3B putative gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2489 AFE_2490 AFE_2490 AFE_2490 2219238 2219465 + hypothetical protein identified by glimmer%3B putative gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2490 AFE_2491 AFE_2491 AFE_2491 2220122 2220814 + lipoprotein%2C putative gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2491 AFE_2492 AFE_2492 AFE_2492 2221235 2221537 - hypothetical protein identified by glimmer%3B putative gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2492 AFE_2493 AFE_2493 AFE_2493 2221530 2221739 - hypothetical protein identified by glimmer%3B putative gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2493 AFE_2494 AFE_2494 AFE_2494 2221801 2222160 - conserved hypothetical protein identified by similarity to GB:AAQ59662.1 gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2494 AFE_2495 AFE_2495 AFE_2495 2222232 2222498 - hypothetical protein identified by glimmer%3B putative gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2495 AFE_2496 AFE_2496 AFE_2496 2222583 2222993 + hypothetical protein identified by glimmer%3B putative gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2496 AFE_2497 AFE_2497 AFE_2497 2222990 2223304 + hypothetical protein identified by glimmer%3B putative gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2497 AFE_2498 AFE_2498 AFE_2498 2223385 2224002 - hypothetical protein identified by glimmer%3B putative gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2498 AFE_2499 AFE_2499 AFE_2499 2224050 2224205 - lipoprotein%2C putative gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2499 AFE_2500 AFE_2500 AFE_2500 2224256 2224408 - hypothetical protein identified by glimmer%3B putative gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2500 AFE_2501 AFE_2501 AFE_2501 2224447 2224860 + hypothetical protein identified by glimmer%3B putative gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2501 AFE_2502 AFE_2502 AFE_2502 2225821 2227266 - conserved hypothetical protein identified by similarity to GB:AAO53608.1 gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2502 AFE_2503 AFE_2503 AFE_2503 2227266 2228294 - conserved domain protein identified by similarity to GB:AAO53609.1 gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2503 AFE_2504 AFE_2504 AFE_2504 2228357 2229241 - transposon%2C transposition helper protein C%2C putative Structure resembles Tn7%3B identified by similarity to SP:P05846%3B match to protein family HMM PF05621 gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2504 AFE_2505 AFE_2505 AFE_2505 2229241 2231121 - transposon%2C transposition protein B%2C putative Structure resembles Tn7%3B identified by similarity to SP:P13989%3B match to protein family HMM PF00665 gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2505 AFE_2506 AFE_2506 AFE_2506 2231114 2231803 - transposon%2C transposase protein A%2C putative Structure resembles Tn7%3B identified by match to protein family HMM PF08721%3B match to protein family HMM PF08722 gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2506 AFE_2507 AFE_2507 AFE_2507 2231881 2232582 + competence protein ComM%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to SP:P45049%3B match to protein family HMM PF01078 pseudogene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2507 AFE_2508 AFE_2508 AFE_2508 2232729 2233106 - conserved hypothetical protein identified by similarity to PIR:C70336 gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2508 AFE_2509 AFE_2509 AFE_2509 2233348 2233830 - transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2509 AFE_2510 AFE_2510 AFE_2510 2233876 2234001 - hypothetical protein identified by glimmer%3B putative gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2510 AFE_2511 AFE_2511 AFE_2511 2234077 2234232 + hypothetical protein identified by glimmer%3B putative gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2511 AFE_2512 AFE_2512 AFE_2512 2234434 2234553 - hypothetical protein identified by glimmer%3B putative gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2512 AFE_2513 AFE_2513 AFE_2513 2234644 2235168 - conserved hypothetical protein identified by match to protein family HMM PF08238 gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2513 AFE_2514 AFE_2514 prfC prfC 2235196 2236815 - peptide chain release factor 3 identified by similarity to SP:P33998%3B match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00503 gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2514 AFE_2515 AFE_2515 rimI rimI 2236822 2237298 - ribosomal-protein-alanine acetyltransferase identified by similarity to SP:P09453%3B match to protein family HMM PF00583%3B match to protein family HMM TIGR01575 gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2515 AFE_2516 AFE_2516 AFE_2516 2237300 2237968 - conserved hypothetical protein identified by match to protein family HMM PF00814 gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2516 AFE_2517 AFE_2517 AFE_2517 2237968 2239893 - ATP-dependent helicase%2C DEXD family gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2517 AFE_2518 AFE_2518 AFE_2518 2240322 2240429 - hypothetical protein identified by glimmer%3B putative gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2518 AFE_2519 AFE_2519 AFE_2519 2239963 2240325 + hypothetical protein identified by glimmer%3B putative gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2519 AFE_2520 AFE_2520 AFE_2520 2240538 2241635 - NLP/P60 family protein identified by match to protein family HMM PF00877 gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2520 AFE_2521 AFE_2521 AFE_2521 2241618 2241725 + hypothetical protein identified by glimmer%3B putative gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2521 AFE_2522 AFE_2522 AFE_2522 2242136 2243392 + carbohydrate-selective porin%2C OprB family identified by match to protein family HMM PF04966 gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2522 AFE_2523 AFE_2523 AFE_2523 2243425 2243712 + feoA family protein identified by match to protein family HMM PF04023 gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2523 AFE_2524 AFE_2524 feoB feoB 2243757 2246057 + ferrous iron transport protein B identified by match to protein family HMM PF01926%3B match to protein family HMM PF02421%3B match to protein family HMM PF07664%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00437 gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2524 AFE_2525 AFE_2525 AFE_2525 2246054 2246353 + hypothetical protein identified by glimmer%3B putative gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2525 AFE_2526 AFE_2526 AFE_2526 2246451 2247323 + hydrolase%2C carbon-nitrogen family identified by match to protein family HMM PF00795%3B match to protein family HMM TIGR03381 gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2526 AFE_2527 AFE_2527 AFE_2527 2248065 2248712 - membrane protein%2C DedA family identified by similarity to GB:AAN66167.1%3B match to protein family HMM PF09335 gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2527 AFE_2528 AFE_2528 AFE_2528 2247316 2248068 + glutamine amidotransferase%2C class I identified by match to protein family HMM PF00117%3B match to protein family HMM PF07722 gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2528 AFE_2529 AFE_2529 AFE_2529 2248744 2249100 - hypothetical protein identified by glimmer%3B putative gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2529 AFE_2530 AFE_2530 AFE_2530 2249097 2249849 - conserved hypothetical protein identified by similarity to GB:AAQ61408.1 gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2530 AFE_2531 AFE_2531 AFE_2531 2249851 2250777 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2531 AFE_2532 AFE_2532 AFE_2532 2250862 2251464 + hypothetical protein identified by glimmer%3B putative gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2532 AFE_2533 AFE_2533 AFE_2533 2251486 2252631 - oxidoreductase%2C aldo/keto reductase family identified by match to protein family HMM PF00248 gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2533 AFE_2534 AFE_2534 AFE_2534 2252628 2253794 - histone deacetylase family protein identified by match to protein family HMM PF00850 gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2534 AFE_2535 AFE_2535 AFE_2535 2253839 2256256 - von Willebrand factor type A domain protein gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2535 AFE_2536 AFE_2536 AFE_2536 2256344 2257174 - CbbQ/NirQ/NorQ/GpvN family protein identified by similarity to SP:Q02441%3B similarity to SP:Q51858%3B match to protein family HMM PF07728%3B match to protein family HMM PF08406 gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2536 AFE_2537 AFE_2537 AFE_2537 2257171 2257572 - hypothetical protein identified by glimmer%3B putative gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2537 AFE_2538 AFE_2538 AFE_2538 2257672 2258040 - hypothetical protein identified by glimmer%3B putative gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2538 AFE_2539 AFE_2539 AFE_2539 2258077 2258436 - hypothetical protein identified by glimmer%3B putative gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2539 AFE_2540 AFE_2540 AFE_2540 2258510 2259421 - biotin/lipoate A/B protein ligase family protein identified by match to protein family HMM PF03099 gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2540 AFE_2541 AFE_2541 AFE_2541 2259522 2259935 - hypothetical protein identified by glimmer%3B putative gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2541 AFE_2542 AFE_2542 AFE_2542 2260062 2261405 - outer membrane protein%2C OMPP1/FadL/TodX family identified by match to protein family HMM PF03349%3B match to protein family HMM TIGR03304 gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2542 AFE_2543 AFE_2543 AFE_2543 2261618 2262754 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2543 AFE_2544 AFE_2544 AFE_2544 2262779 2263840 - geranylgeranyl reductase family protein identified by match to protein family HMM PF01494%3B match to protein family HMM PF05834%3B match to protein family HMM TIGR02032 gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2544 AFE_2545 AFE_2545 AFE_2545 2263837 2264907 - lipoate-protein ligase A%2C putative identified by similarity to PIR:C70441%3B match to protein family HMM PF03099 gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2545 AFE_2546 AFE_2546 AFE_2546 2264956 2266089 - radical SAM domain protein identified by match to protein family HMM PF04055 gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2546 AFE_2547 AFE_2547 AFE_2547 2266162 2266599 - glycine cleavage system H protein%2C putative identified by similarity to SP:P23884%3B match to protein family HMM PF01597 gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2547 AFE_2548 AFE_2548 AFE_2548 2266655 2267053 - conserved hypothetical protein identified by similarity to PIR:A83048 gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2548 AFE_2549 AFE_2549 AFE_2549 2267050 2267496 - glycine cleavage system protein H%2C putative identified by similarity to SP:P23884%3B match to protein family HMM PF01597 gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2549 AFE_2550 AFE_2550 sdhC sdhC 2267565 2268476 - succinate dehydrogenase/fumarate reductase%2C C subunit identified by similarity to PIR:T50538%3B match to protein family HMM PF02754 gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2550 AFE_2551 AFE_2551 AFE_2551 2268469 2269188 - iron-sulfur cluster-binding protein gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2551 AFE_2552 AFE_2552 AFE_2552 2269212 2270063 - conserved hypothetical protein identified by similarity to PIR:H70335 gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2552 AFE_2553 AFE_2553 AFE_2553 2270020 2271075 - pyridine nucleotide-disulfide oxidoreductase identified by similarity to PIR:G70335%3B match to protein family HMM PF00070%3B match to protein family HMM PF07992 gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2553 AFE_2554 AFE_2554 AFE_2554 2271088 2272431 - heterodisulfide reductase subunit B%2C homolog identified by similarity to PIR:H90265%3B match to protein family HMM PF02754 gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2554 AFE_2555 AFE_2555 AFE_2555 2272442 2273128 - iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037 gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2555 AFE_2556 AFE_2556 AFE_2556 2273192 2273662 - conserved hypothetical protein identified by similarity to GB:AAM72097.1 gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2556 AFE_2557 AFE_2557 AFE_2557 2273706 2273936 - conserved hypothetical protein identified by similarity to GB:CAD85318.1%3B match to protein family HMM PF01206 gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2557 AFE_2558 AFE_2558 AFE_2558 2274060 2274389 - rhodanese-like domain protein identified by match to protein family HMM PF00581 gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2558 AFE_2559 AFE_2559 moaA moaA 2274450 2275478 - molybdenum cofactor biosynthesis protein A identified by similarity to SP:Q44118%3B match to protein family HMM PF04055%3B match to protein family HMM PF06463%3B match to protein family HMM TIGR02666 gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2559 AFE_2560 AFE_2560 AFE_2560 2275749 2276054 + hypothetical protein identified by glimmer%3B putative gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2560 AFE_2561 AFE_2561 moaC moaC 2276058 2276567 - molybdenum cofactor biosynthesis protein C identified by similarity to SP:P30747%3B match to protein family HMM PF01967%3B match to protein family HMM TIGR00581 gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2561 AFE_2562 AFE_2562 mreB mreB 2276822 2277868 + rod shape-determining protein MreB identified by similarity to SP:P13519%3B match to protein family HMM PF06723%3B match to protein family HMM TIGR00904 gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2562 AFE_2563 AFE_2563 mreC mreC 2277892 2278731 + rod shape-determining protein MreC identified by match to protein family HMM PF04085%3B match to protein family HMM TIGR00219 gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2563 AFE_2564 AFE_2564 AFE_2564 2278728 2279204 + rod shape-determining protein MreD%2C putative identified by similarity to SP:P16927%3B match to protein family HMM TIGR03426 gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2564 AFE_2565 AFE_2565 mrdA mrdA 2279201 2281009 + penicillin-binding protein 2 identified by similarity to SP:P08150%3B match to protein family HMM PF00905%3B match to protein family HMM PF03717%3B match to protein family HMM TIGR03423 gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2565 AFE_2566 AFE_2566 rodA rodA 2281006 2282217 + rod shape-determining protein RodA identified by similarity to SP:P15035%3B match to protein family HMM PF01098%3B match to protein family HMM TIGR02210 gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2566 AFE_2567 AFE_2567 AFE_2567 2282251 2283417 + D-alanyl-D-alanine carboxypeptidase identified by similarity to SP:P04287%3B match to protein family HMM PF00768%3B match to protein family HMM PF07943 gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2567 AFE_2568 AFE_2568 AFE_2568 2283480 2283962 + hypothetical protein identified by glimmer%3B putative gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2568 AFE_2569 AFE_2569 lipB lipB 2283973 2284611 + lipoate-protein ligase B identified by similarity to SP:P30976%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00214 gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2569 AFE_2570 AFE_2570 lipA lipA 2284614 2285567 + lipoic acid synthetase identified by similarity to SP:P25845%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00510 gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2570 AFE_2571 AFE_2571 AFE_2571 2285582 2286382 + conserved hypothetical protein identified by similarity to GB:AAO58238.1%3B match to protein family HMM PF02698 gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2571 AFE_2572 AFE_2572 AFE_2572 2286413 2287459 - ErfK/YbiS/YcfS/YnhG family protein identified by match to protein family HMM PF03734 gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2572 AFE_2573 AFE_2573 AFE_2573 2287612 2288043 + hypothetical protein identified by glimmer%3B putative gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2573 AFE_2574 AFE_2574 AFE_2574 2288126 2289598 + conserved hypothetical protein identified by similarity to PIR:E81830 gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2574 AFE_2575 AFE_2575 AFE_2575 2289608 2290777 + conserved domain protein identified by similarity to GB:AAD20272.1 gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2575 AFE_2576 AFE_2576 AFE_2576 2290837 2291403 + small GTP-binding protein identified by match to protein family HMM PF03029%3B match to protein family HMM TIGR00231 gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2576 AFE_2577 AFE_2577 AFE_2577 2291400 2292038 + conserved hypothetical protein identified by similarity to PIR:A81195 gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2577 AFE_2578 AFE_2578 AFE_2578 2292084 2292446 + roadblock/LC7 domain protein identified by match to protein family HMM PF03259 gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2578 AFE_2579 AFE_2579 AFE_2579 2292458 2292586 - hypothetical protein identified by glimmer%3B putative gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2579 AFE_2580 AFE_2580 glyQ glyQ 2292536 2293420 + glycyl-tRNA synthetase%2C alpha subunit identified by similarity to SP:P00960%3B match to protein family HMM PF02091%3B match to protein family HMM TIGR00388 gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2580 AFE_2581 AFE_2581 glyS glyS 2293407 2295491 + glycyl-tRNA synthetase%2C beta subunit identified by similarity to SP:P00961%3B match to protein family HMM PF02092%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00211 gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2581 AFE_2582 AFE_2582 AFE_2582 2295491 2296030 + histidinol-phosphate phosphatase domain protein identified by similarity to GB:AAO91485.1%3B match to protein family HMM TIGR01656%3B match to protein family HMM TIGR01662 gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2582 AFE_2583 AFE_2583 AFE_2583 2296703 2297611 - alpha-L-glutamate ligase%2C RimK family identified by similarity to SP:P17116%3B match to protein family HMM PF02655%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR00768 gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2583 AFE_2584 AFE_2584 AFE_2584 2296027 2296755 + acyltransferase family protein identified by match to protein family HMM PF01553 gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2584 AFE_2585 AFE_2585 AFE_2585 2297614 2297934 - hypothetical protein identified by glimmer%3B putative gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2585 AFE_2586 AFE_2586 AFE_2586 2298112 2299464 + heterodisulfide reductase subunit B%2C homolog identified by similarity to PIR:H90265%3B match to protein family HMM PF02754 gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2586 AFE_2587 AFE_2587 AFE_2587 2299471 2299944 + hypothetical protein identified by glimmer%3B putative gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2587 AFE_2588 AFE_2588 AFE_2588 2300182 2300883 + conserved hypothetical protein identified by similarity to GB:CAE33726.1%3B match to protein family HMM PF02677 gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2588 AFE_2589 AFE_2589 ampD ampD 2301397 2301951 - ampD protein identified by similarity to SP:P13016%3B match to protein family HMM PF01510 gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2589 AFE_2590 AFE_2590 AFE_2590 2301948 2302283 - thioredoxin%2C putative identified by similarity to SP:P52229 gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2590 AFE_2591 AFE_2591 AFE_2591 2302544 2302768 - hypothetical protein identified by glimmer%3B putative gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2591 AFE_2592 AFE_2592 AFE_2592 2302761 2302922 - hypothetical protein identified by glimmer%3B putative gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2592 AFE_2593 AFE_2593 AFE_2593 2302879 2303298 - hypothetical protein identified by glimmer%3B putative gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2593 AFE_2594 AFE_2594 gst gst 2303356 2303970 - glutathione S-transferase identified by similarity to GB:CAB57289.1%3B match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2594 AFE_2595 AFE_2595 AFE_2595 2304199 2304573 + transcriptional regulator identified by match to protein family HMM PF01638 gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2595 AFE_2596 AFE_2596 leuA-1 leuA-1 2304658 2306199 - 2-isopropylmalate synthase identified by match to protein family HMM PF00682%3B match to protein family HMM PF08502%3B match to protein family HMM TIGR00973 gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2596 AFE_2597 AFE_2597 AFE_2597 2306274 2307593 - sigma-54 dependent transcriptional regulator%2C putative identified by match to protein family HMM PF00004%3B match to protein family HMM PF00158%3B match to protein family HMM PF07728 gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2597 AFE_2598 AFE_2598 AFE_2598 2307809 2307919 + hypothetical protein identified by glimmer%3B putative gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2598 AFE_2599 AFE_2599 AFE_2599 2307992 2308378 + conserved hypothetical protein identified by similarity to PIR:C69319 gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2599 AFE_2600 AFE_2600 AFE_2600 2308422 2308652 + conserved hypothetical protein identified by similarity to SP:O29695%3B match to protein family HMM PF01206 gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2600 AFE_2601 AFE_2601 AFE_2601 2308695 2309834 + pyridine nucleotide-disulfide oxidoreductase identified by similarity to SP:Q9R112%3B match to protein family HMM PF07992 gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2601 AFE_2602 AFE_2602 AFE_2602 2310568 2310849 - hypothetical protein identified by glimmer%3B putative gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2602 AFE_2603 AFE_2603 AFE_2603 2310953 2311564 + conserved hypothetical protein identified by similarity to PIR:H83045%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2603 AFE_2604 AFE_2604 AFE_2604 2311933 2312856 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2604 AFE_2605 AFE_2605 AFE_2605 2312853 2314289 + ABC transporter%2C permease protein%2C putative gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2605 AFE_2606 AFE_2606 AFE_2606 2315014 2315090 - tRNA-Pro tRNA gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2606 AFE_2607 AFE_2607 AFE_2607 2315128 2315580 - transcriptional regulator%2C MerR family identified by match to protein family HMM PF00376 gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2607 AFE_2608 AFE_2608 ihfA ihfA 2315555 2315854 - integration host factor%2C alpha subunit identified by similarity to SP:P06984%3B match to protein family HMM PF00216%3B match to protein family HMM TIGR00987 gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2608 AFE_2609 AFE_2609 pheT pheT 2315864 2318263 - phenylalanyl-tRNA synthetase%2C beta subunit identified by similarity to SP:P07395%3B match to protein family HMM PF01588%3B match to protein family HMM PF03147%3B match to protein family HMM PF03483%3B match to protein family HMM PF03484%3B match to protein family HMM TIGR00472 gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2609 AFE_2610 AFE_2610 pheS pheS 2318273 2319295 - phenylalanyl-tRNA synthetase%2C alpha subunit identified by similarity to SP:P08312%3B match to protein family HMM PF01409%3B match to protein family HMM PF02912%3B match to protein family HMM TIGR00468 gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2610 AFE_2611 AFE_2611 rplT rplT 2319316 2319675 - ribosomal protein L20 identified by similarity to SP:P02421%3B match to protein family HMM PF00453%3B match to protein family HMM TIGR01032 gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2611 AFE_2612 AFE_2612 rpmI rpmI 2319694 2319891 - ribosomal protein L35 identified by similarity to SP:P07085%3B match to protein family HMM PF01632%3B match to protein family HMM TIGR00001 gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2612 AFE_2613 AFE_2613 infC infC 2319901 2320419 - translation initiation factor IF-3 identified by similarity to SP:P02999%3B match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168 gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2613 AFE_2614 AFE_2614 thrS thrS 2320436 2322370 - threonyl-tRNA synthetase identified by similarity to SP:P00955%3B match to protein family HMM PF00587%3B match to protein family HMM PF02824%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418 gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2614 AFE_2615 AFE_2615 AFE_2615 2322423 2322497 - tRNA-Val tRNA gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2615 AFE_2616 AFE_2616 AFE_2616 2322532 2322684 - hypothetical protein identified by glimmer%3B putative gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2616 AFE_2617 AFE_2617 nuoN nuoN 2322654 2324099 - NADH-quinone oxidoreductase%2C N subunit identified by similarity to SP:P50973%3B match to protein family HMM PF00361%3B match to protein family HMM TIGR01770 gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2617 AFE_2618 AFE_2618 nuoM nuoM 2324112 2325596 - NADH-quinone oxidoreductase%2C M subunit identified by similarity to SP:P50974%3B match to protein family HMM PF00361%3B match to protein family HMM TIGR01972 gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2618 AFE_2619 AFE_2619 nuoL nuoL 2325600 2327564 - NADH-quinone oxidoreductase%2C L subunit identified by similarity to SP:P50939%3B match to protein family HMM PF00361%3B match to protein family HMM PF00662%3B match to protein family HMM TIGR01974 gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2619 AFE_2620 AFE_2620 nuoK nuoK 2327584 2327901 - NADH-quinone oxidoreductase%2C K subunit identified by similarity to SP:P50940%3B match to protein family HMM PF00420 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2620 AFE_2621 AFE_2621 nuoJ nuoJ 2327901 2328497 - NADH-quinone oxidoreductase%2C J subunit identified by similarity to SP:P50975%3B match to protein family HMM PF00499 gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2621 AFE_2622 AFE_2622 nuoI nuoI 2328513 2329004 - NADH-quinone oxidoreductase%2C I subunit identified by similarity to SP:P42031%3B match to protein family HMM PF00037%3B match to protein family HMM TIGR01971 gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2622 AFE_2623 AFE_2623 nuoH nuoH 2329015 2330040 - NADH-quinone oxidoreductase%2C H subunit identified by match to protein family HMM PF00146 gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2623 AFE_2624 AFE_2624 nuoG nuoG 2330052 2332400 - NADH-quinone oxidoreductase%2C G subunit identified by match to protein family HMM PF00111%3B match to protein family HMM PF00384%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01973 gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2624 AFE_2625 AFE_2625 nuoF nuoF 2332400 2333683 - NADH-quinone oxidoreductase%2C F subunit identified by similarity to SP:O07948%3B match to protein family HMM PF01512%3B match to protein family HMM TIGR01959 gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2625 AFE_2626 AFE_2626 nuoE nuoE 2333673 2334164 - NADH-quinone oxidoreductase%2C E subunit identified by match to protein family HMM PF01257%3B match to protein family HMM TIGR01958 gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2626 AFE_2627 AFE_2627 nuoD nuoD 2334168 2335421 - NADH-quinone oxidoreductase%2C D subunit identified by match to protein family HMM PF00346%3B match to protein family HMM TIGR01962 gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2627 AFE_2628 AFE_2628 nuoC nuoC 2335405 2336013 - NADH-quinone oxidoreductase%2C C subunit identified by similarity to SP:O84971%3B match to protein family HMM PF00329%3B match to protein family HMM TIGR01961 gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2628 AFE_2629 AFE_2629 nuoB nuoB 2336017 2336493 - NADH-quinone oxidoreductase%2C B subunit identified by match to protein family HMM PF01058%3B match to protein family HMM TIGR01957 gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2629 AFE_2630 AFE_2630 nuoA nuoA 2336484 2336840 - NADH-quinone oxidoreductase%2C A subunit identified by similarity to SP:O84969%3B match to protein family HMM PF00507 gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2630 AFE_2631 AFE_2631 AFE_2631 2336971 2337055 - tRNA-Leu tRNA gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2631 AFE_2632 AFE_2632 secG secG 2337096 2337497 - preprotein translocase%2C SecG subunit identified by similarity to SP:P33582%3B match to protein family HMM PF03840%3B match to protein family HMM TIGR00810 gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2632 AFE_2633 AFE_2633 tpiA tpiA 2337502 2338275 - triosephosphate isomerase identified by match to protein family HMM PF00121%3B match to protein family HMM TIGR00419 gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2633 AFE_2634 AFE_2634 glmM glmM 2338382 2339746 - phosphoglucosamine mutase identified by similarity to SP:P31120%3B match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880%3B match to protein family HMM TIGR01455 gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2634 AFE_2635 AFE_2635 folP folP 2339785 2340618 - dihydropteroate synthase identified by similarity to SP:P26282%3B match to protein family HMM PF00809%3B match to protein family HMM TIGR01496 gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2635 AFE_2636 AFE_2636 ftsH ftsH 2340615 2342540 - cell division protein FtsH identified by similarity to SP:P28691%3B match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM TIGR01241 gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2636 AFE_2637 AFE_2637 tldD tldD 2342638 2344083 - tldD protein identified by similarity to SP:P46473%3B match to protein family HMM PF01523 gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2637 AFE_2638 AFE_2638 nrdA nrdA 2344408 2347254 + ribonucleotide-diphosphate reductase%2C alpha subunit identified by similarity to GB:CAB82485.1%3B match to protein family HMM PF00317%3B match to protein family HMM PF02867%3B match to protein family HMM PF03477%3B match to protein family HMM TIGR02506 gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2638 AFE_2639 AFE_2639 nrdB nrdB 2347267 2348409 + ribonucleoside-diphosphate reductase%2C beta subunit identified by similarity to GB:CAC17632.1%3B match to protein family HMM PF00268 gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2639 AFE_2640 AFE_2640 AFE_2640 2348901 2349170 + hypothetical protein identified by glimmer%3B putative gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2640 AFE_2641 AFE_2641 AFE_2641 2349182 2349523 + transcriptional regulator%2C ArsR family identified by match to protein family HMM PF01022 gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2641 AFE_2642 AFE_2642 AFE_2642 2349520 2350797 + membrane protein%2C putative identified by match to protein family HMM PF07690 gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2642 AFE_2643 AFE_2643 AFE_2643 2350794 2351135 + conserved hypothetical protein identified by similarity to GB:AAK02599.1 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2643 AFE_2644 AFE_2644 AFE_2644 2351189 2351941 + metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2644 AFE_2645 AFE_2645 AFE_2645 2352321 2352722 - hypothetical protein identified by glimmer%3B putative gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2645 AFE_2646 AFE_2646 AFE_2646 2352957 2353202 - hypothetical protein identified by glimmer%3B putative gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2646 AFE_2647 AFE_2647 AFE_2647 2353318 2353449 - hypothetical protein identified by glimmer%3B putative gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2647 AFE_2648 AFE_2648 AFE_2648 2354638 2355072 + hypothetical protein identified by glimmer%3B putative gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2648 AFE_2649 AFE_2649 AFE_2649 2355199 2355318 - hypothetical protein identified by glimmer%3B putative gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2649 AFE_2650 AFE_2650 AFE_2650 2355693 2355857 - hypothetical protein identified by glimmer%3B putative gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2650 AFE_2651 AFE_2651 AFE_2651 2355887 2356981 + copper resistance protein%2C putative identified by match to protein family HMM PF05425 gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2651 AFE_2652 AFE_2652 AFE_2652 2357000 2357146 + hypothetical protein identified by glimmer%3B putative gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2652 AFE_2653 AFE_2653 AFE_2653 2357600 2357887 - hypothetical protein identified by glimmer%3B putative gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2653 AFE_2654 AFE_2654 dinB dinB 2358296 2359432 + DNA polymerase IV identified by match to protein family HMM PF00817 gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2654 AFE_2655 AFE_2655 AFE_2655 2359433 2359819 + PIN domain protein identified by match to protein family HMM PF01850 gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2655 AFE_2656 AFE_2656 AFE_2656 2359889 2360626 - conserved hypothetical protein identified by similarity to GB:BAC74278.1%3B match to protein family HMM PF01904 gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2656 AFE_2657 AFE_2657 AFE_2657 2360635 2360760 - hypothetical protein identified by glimmer%3B putative gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2657 AFE_2658 AFE_2658 AFE_2658 2361174 2361476 + conserved hypothetical protein identified by similarity to GB:AAM81143.1 gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2658 AFE_2659 AFE_2659 AFE_2659 2361538 2362944 + amino acid permease family protein identified by match to protein family HMM PF00324 gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2659 AFE_2660 AFE_2660 dcd dcd 2363056 2363622 - deoxycytidine triphosphate deaminase identified by similarity to SP:Q8XWV4%3B match to protein family HMM PF00692%3B match to protein family HMM TIGR02274 gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2660 AFE_2661 AFE_2661 mrp mrp 2363652 2364728 - Mrp protein identified by similarity to SP:P21590 gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2661 AFE_2662 AFE_2662 AFE_2662 2364743 2365057 - antibiotic biosynthesis monooxygenase family protein identified by match to protein family HMM PF03992 gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2662 AFE_2663 AFE_2663 dapB dapB 2365087 2365917 - dihydrodipicolinate reductase identified by similarity to SP:P04036%3B match to protein family HMM PF01113%3B match to protein family HMM PF03447%3B match to protein family HMM PF05173%3B match to protein family HMM TIGR00036 gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2663 AFE_2664 AFE_2664 dnaJ dnaJ 2365917 2367044 - chaperone protein DnaJ identified by similarity to SP:P08622%3B match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349 gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2664 AFE_2665 AFE_2665 dnaK dnaK 2367111 2369015 - chaperone protein Dnak identified by similarity to SP:P04475%3B match to protein family HMM PF00012%3B match to protein family HMM TIGR02350 gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2665 AFE_2666 AFE_2666 grpE grpE 2369061 2369576 - co-chaperone GrpE identified by similarity to SP:P09372%3B match to protein family HMM PF01025 gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2666 AFE_2667 AFE_2667 hrcA hrcA 2369649 2370671 - heat-inducible transcription repressor HrcA identified by match to protein family HMM PF01628%3B match to protein family HMM TIGR00331 gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2667 AFE_2668 AFE_2668 AFE_2668 2370670 2370762 + hypothetical protein identified by glimmer%3B putative gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2668 AFE_2669 AFE_2669 rpmG rpmG 2370906 2371061 - ribosomal protein L33 identified by similarity to SP:P02436%3B match to protein family HMM PF00471%3B match to protein family HMM TIGR01023 gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2669 AFE_2670 AFE_2670 rpmB rpmB 2371072 2371308 - ribosomal protein L28 identified by similarity to SP:P02428%3B match to protein family HMM PF00830%3B match to protein family HMM TIGR00009 gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2670 AFE_2671 AFE_2671 AFE_2671 2373448 2374566 - phospho-2-dehydro-3-deoxyheptonate aldolase%2C putative identified by similarity to SP:P39912%3B match to protein family HMM PF00793 gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2671 AFE_2672 AFE_2672 metG metG 2371419 2373455 + methionyl-tRNA synthetase identified by similarity to SP:P00959%3B match to protein family HMM PF01588%3B match to protein family HMM PF09334%3B match to protein family HMM TIGR00398%3B match to protein family HMM TIGR00399 gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2672 AFE_2673 AFE_2673 fumC fumC 2374645 2376018 - fumarate hydratase%2C class II identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00979 gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2673 AFE_2674 AFE_2674 AFE_2674 2376020 2377816 - oligoendopeptidase F%2C putative identified by similarity to SP:P94876%3B match to protein family HMM PF01432%3B match to protein family HMM PF08439 gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2674 AFE_2675 AFE_2675 AFE_2675 2377860 2378348 - conserved hypothetical protein identified by similarity to GB:CAD84648.1 gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2675 AFE_2676 AFE_2676 AFE_2676 2378470 2380173 + hypothetical protein identified by glimmer%3B putative gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2676 AFE_2677 AFE_2677 AFE_2677 2380239 2380808 - 3-deoxy-D-manno-octulosonic-acid transferase domain protein identified by similarity to GB:AAO09303.1 gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2677 AFE_2678 AFE_2678 glgA glgA 2380966 2382435 + glycogen synthase identified by similarity to SP:P08323%3B match to protein family HMM PF00534%3B match to protein family HMM PF08323%3B match to protein family HMM TIGR02095 gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2678 AFE_2679 AFE_2679 AFE_2679 2382476 2383864 + metallo-beta-lactamase family protein identified by match to protein family HMM PF00753%3B match to protein family HMM PF07521 gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2679 AFE_2680 AFE_2680 AFE_2680 2383948 2384364 + hypothetical protein identified by glimmer%3B putative gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2680 AFE_2681 AFE_2681 AFE_2681 2385104 2387065 - TPR domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2681 AFE_2682 AFE_2682 nth nth 2384462 2385124 + endonuclease III identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01083 gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2682 AFE_2683 AFE_2683 AFE_2683 2387448 2387639 - hypothetical protein identified by glimmer%3B putative gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2683 AFE_2684 AFE_2684 AFE_2684 2387677 2389797 + hemagluttinin family protein identified by match to protein family HMM PF05658%3B match to protein family HMM PF05662%3B match to protein family HMM TIGR03304 gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2684 AFE_2685 AFE_2685 AFE_2685 2389908 2390459 + OmpA family protein identified by match to protein family HMM PF00691 gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2685 AFE_2686 AFE_2686 AFE_2686 2390524 2391621 - conserved domain protein identified by match to protein family HMM PF08238 gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2686 AFE_2687 AFE_2687 AFE_2687 2391839 2392426 + hypothetical protein identified by glimmer%3B putative gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2687 AFE_2688 AFE_2688 AFE_2688 2392505 2392993 + hypothetical protein identified by glimmer%3B putative gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2688 AFE_2689 AFE_2689 AFE_2689 2392997 2393791 - TonB family protein gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2689 AFE_2690 AFE_2690 AFE_2690 2393784 2395580 - type I secretion outer membrane protein%2C putative identified by match to protein family HMM PF02321 gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2690 AFE_2691 AFE_2691 AFE_2691 2395612 2395758 - hypothetical protein identified by glimmer%3B putative gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2691 AFE_2692 AFE_2692 AFE_2692 2395736 2397133 - type I secretion membrane fusion protein%2C HlyD family identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01843 gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2692 AFE_2693 AFE_2693 AFE_2693 2397135 2399309 - type I secretion system ATPase identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM PF03412%3B match to protein family HMM TIGR01846 gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2693 AFE_2694 AFE_2694 AFE_2694 2399306 2399944 - conserved hypothetical protein identified by similarity to GB:CAE32332.1 gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2694 AFE_2695 AFE_2695 AFE_2695 2399916 2400143 + hypothetical protein identified by glimmer%3B putative gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2695 AFE_2696 AFE_2696 AFE_2696 2400189 2401577 - sigma-54 dependent transcriptional regulator identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2696 AFE_2697 AFE_2697 AFE_2697 2401577 2403349 - conserved hypothetical protein identified by similarity to PIR:H83107 gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2697 AFE_2698 AFE_2698 AFE_2698 2403333 2403944 - hypothetical protein identified by glimmer%3B putative gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2698 AFE_2699 AFE_2699 AFE_2699 2403941 2404780 - lipoprotein%2C putative identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2699 AFE_2700 AFE_2700 tadC tadC 2404783 2405721 - tight adherence protein TadC identified by similarity to GB:AAL92472.1%3B match to protein family HMM PF00482 gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2700 AFE_2701 AFE_2701 tadB tadB 2405729 2406670 - tight adherence protein TadB%2C putative identified by similarity to GB:AAO10168.1%3B match to protein family HMM PF00482 gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2701 AFE_2702 AFE_2702 tadA tadA 2406667 2408001 - tight adherence protein TadA identified by similarity to GB:AAN75211.1%3B match to protein family HMM PF00437 gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2702 AFE_2703 AFE_2703 AFE_2703 2407998 2409227 - pilus assembly protein CpaE%2C putative identified by similarity to GB:AAF40194.1 gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2703 AFE_2704 AFE_2704 AFE_2704 2409224 2410660 - bacterial type II/III secretion system protein identified by match to protein family HMM PF00263 gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2704 AFE_2705 AFE_2705 AFE_2705 2410674 2411645 - conserved hypothetical protein identified by similarity to GB:CAE32322.1%3B match to protein family HMM PF08666%3B match to protein family HMM TIGR03177 gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2705 AFE_2706 AFE_2706 AFE_2706 2411644 2411748 + hypothetical protein identified by glimmer%3B putative gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2706 AFE_2707 AFE_2707 AFE_2707 2411754 2412239 - conserved hypothetical protein identified by similarity to GB:CAE42273.1%3B match to protein family HMM PF07811 gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2707 AFE_2708 AFE_2708 AFE_2708 2412248 2412691 - membrane protein%2C putative identified by match to protein family HMM PF01478 gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2708 AFE_2709 AFE_2709 AFE_2709 2413117 2414343 + ISAfe3%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2709 AFE_2710 AFE_2710 AFE_2710 2414427 2414666 - pilin%2C putative identified by match to protein family HMM PF04964 gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2710 AFE_2711 AFE_2711 AFE_2711 2414893 2416050 - hypothetical protein identified by glimmer%3B putative gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2711 AFE_2712 AFE_2712 AFE_2712 2416116 2416568 + hypothetical protein identified by glimmer%3B putative gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2712 AFE_2713 AFE_2713 AFE_2713 2416675 2417049 - hypothetical protein identified by glimmer%3B putative gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2713 AFE_2714 AFE_2714 AFE_2714 2417016 2417330 - hypothetical protein identified by glimmer%3B putative gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2714 AFE_2715 AFE_2715 AFE_2715 2417685 2418122 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2715 AFE_2716 AFE_2716 AFE_2716 2418150 2420438 - TPR domain/sulfotransferase domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF00685%3B match to protein family HMM PF07719%3B match to protein family HMM PF07720%3B match to protein family HMM PF07721 gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2716 AFE_2717 AFE_2717 AFE_2717 2420539 2420940 - membrane protein%2C putative gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2717 AFE_2718 AFE_2718 nrdD nrdD 2421121 2422896 + anaerobic ribonucleoside-triphosphate reductase%2C alpha subunit identified by similarity to GB:AAP85992.1%3B match to protein family HMM TIGR02487 gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2718 AFE_2719 AFE_2719 AFE_2719 2422916 2423122 + conserved hypothetical protein identified by similarity to GB:AAP85991.1 gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2719 AFE_2720 AFE_2720 nrdG nrdG 2423151 2423852 + anaerobic ribonucleoside-triphosphate reductase%2C beta subunit identified by similarity to GB:CAA10042.1%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR02495 gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2720 AFE_2721 AFE_2721 AFE_2721 2423861 2425393 - lipoate-protein ligase A%2C putative identified by similarity to PIR:C70441%3B match to protein family HMM PF03099 gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2721 AFE_2722 AFE_2722 yhbV yhbV 2425407 2426285 - peptidase%2C U32 family identified by match to protein family HMM PF01136 gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2722 AFE_2723 AFE_2723 AFE_2723 2426363 2427373 - peptidase%2C U32 family identified by similarity to GB:AAQ61744.1%3B match to protein family HMM PF01136 gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2723 AFE_2724 AFE_2724 AFE_2724 2427404 2428018 - conserved hypothetical protein identified by similarity to PIR:G83157 gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2724 AFE_2725 AFE_2725 AFE_2725 2428165 2429356 + oxidoreductase%2C 2-nitropropane dioxygenase family%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:AAP86007.1 pseudogene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2725 AFE_2726 AFE_2726 AFE_2726 2429353 2429700 + hypothetical protein identified by glimmer%3B putative gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2726 AFE_2727 AFE_2727 cycA-2 cycA-2 2429913 2430566 + cytochrome c4 identified by match to protein family HMM PF00034 gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2727 AFE_2728 AFE_2728 sdr_2 sdr_2 2430572 2431381 + oxidoreductase%2C short-chain dehydrogenase/reductase family identified by match to protein family HMM PF00106 gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2728 AFE_2729 AFE_2729 petA-2 petA-2 2431412 2432032 + ubiquinol--cytochrome c reductase%2C iron-sulfur subunit identified by match to protein family HMM PF00355%3B match to protein family HMM TIGR01409%3B match to protein family HMM TIGR01416 gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2729 AFE_2730 AFE_2730 petB-2 petB-2 2432060 2433274 + ubiquinol--cytochrome c reductase%2C cytochrome b subunit identified by similarity to SP:P23134%3B match to protein family HMM PF00032%3B match to protein family HMM PF00033 gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2730 AFE_2731 AFE_2731 petC-2 petC-2 2433297 2433998 + ubiquinol--cytochrome c reductase%2C cytochrome c1 subunit identified by match to protein family HMM PF02167 gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2731 AFE_2732 AFE_2732 iro iro 2434085 2434405 + iron oxidase identified by similarity to SP:P50500%3B match to protein family HMM TIGR01409 gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2732 AFE_2733 AFE_2733 AFE_2733 2434579 2435031 + hypothetical protein identified by glimmer%3B putative gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2733 AFE_2734 AFE_2734 AFE_2734 2435132 2435740 + hypothetical protein identified by glimmer%3B putative gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2734 AFE_2735 AFE_2735 AFE_2735 2435808 2435884 - tRNA-Arg tRNA gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2735 AFE_2736 AFE_2736 rrmJ rrmJ 2435895 2436554 - ribosomal RNA large subunit methyltransferase J identified by similarity to SP:P28692%3B match to protein family HMM PF01728 gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2736 AFE_2737 AFE_2737 AFE_2737 2436644 2436928 + conserved hypothetical protein identified by similarity to SP:P71376%3B match to protein family HMM PF01985 gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2737 AFE_2738 AFE_2738 AFE_2738 2437018 2437401 + apaG protein identified by match to protein family HMM PF04379 gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2738 AFE_2739 AFE_2739 AFE_2739 2437398 2438003 + phosphatidylethanolamine N-methyltransferase%2C putative identified by similarity to SP:Q05197%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2739 AFE_2740 AFE_2740 typA typA 2438071 2439888 - GTP-binding protein TypA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01394 gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2740 AFE_2741 AFE_2741 omp40 omp40 2440045 2441259 - major outer membrane protein 40 identified by similarity to GB:CAA10107.1%3B match to protein family HMM PF07396 gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2741 AFE_2742 AFE_2742 AFE_2742 2441446 2441521 + tRNA-Gln tRNA gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2742 AFE_2743 AFE_2743 dapF dapF 2441606 2442472 + diaminopimelate epimerase identified by similarity to SP:P08885%3B match to protein family HMM PF01678%3B match to protein family HMM TIGR00652 gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2743 AFE_2744 AFE_2744 AFE_2744 2442456 2442650 + hypothetical protein identified by glimmer%3B putative gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2744 AFE_2745 AFE_2745 AFE_2745 2442651 2443334 + conserved hypothetical protein identified by similarity to PIR:S61401 gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2745 AFE_2746 AFE_2746 xerC xerC 2443328 2444272 + tyrosine recombinase XerC identified by similarity to SP:P22885%3B match to protein family HMM PF00589%3B match to protein family HMM PF02899 gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2746 AFE_2747 AFE_2747 hslV hslV 2444287 2444808 + heat shock protein HslV identified by similarity to SP:P31059%3B match to protein family HMM PF00227 gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2747 AFE_2748 AFE_2748 hslU hslU 2444811 2446133 + heat shock protein HslVU%2C ATPase subunit HslU identified by similarity to SP:P32168%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00390 gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2748 AFE_2749 AFE_2749 AFE_2749 2446156 2446488 - conserved hypothetical protein identified by similarity to PIR:D75566%3B match to protein family HMM PF08754 gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2749 AFE_2750 AFE_2750 rpoH rpoH 2446485 2447345 - RNA polymerase sigma-32 factor identified by similarity to SP:P00580%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02392%3B match to protein family HMM TIGR02937 gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2750 AFE_2751 AFE_2751 AFE_2751 2447489 2448394 - cell division protein FtsX%2C putative identified by similarity to GB:AAK20882.1%3B match to protein family HMM PF02687 gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2751 AFE_2752 AFE_2752 ftsE ftsE 2448391 2449062 - cell division ATP-binding protein FtsE identified by similarity to GB:AAK20881.1%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02673 gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2752 AFE_2753 AFE_2753 ftsY ftsY 2449059 2450009 - signal recognition particle-docking protein FtsY identified by similarity to SP:P10121%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064 gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2753 AFE_2754 AFE_2754 AFE_2754 2450213 2450782 + methyltransferase%2C putative identified by match to protein family HMM PF03602%3B match to protein family HMM TIGR00095 gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2754 AFE_2755 AFE_2755 coaD coaD 2450775 2451299 + pantetheine-phosphate adenylyltransferase identified by similarity to SP:P23875%3B match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01510 gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2755 AFE_2756 AFE_2756 AFE_2756 2451563 2453542 - conserved hypothetical protein identified by similarity to PIR:F83597 gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2756 AFE_2757 AFE_2757 AFE_2757 2451328 2451579 + iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037 gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2757 AFE_2758 AFE_2758 mutM mutM 2453559 2454371 - formamidopyrimidine-DNA glycosylase identified by match to protein family HMM PF01149%3B match to protein family HMM PF06831%3B match to protein family HMM TIGR00577 gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2758 AFE_2759 AFE_2759 AFE_2759 2454374 2455240 - modification methylase%2C HemK family identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536%3B match to protein family HMM TIGR03387 gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2759 AFE_2760 AFE_2760 prfA prfA 2455230 2456327 - peptide chain release factor 1 identified by similarity to SP:P07011%3B match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019 gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2760 AFE_2761 AFE_2761 hemA hemA 2456324 2457655 - glutamyl-tRNA reductase identified by similarity to SP:P13580%3B match to protein family HMM PF00745%3B match to protein family HMM PF01488%3B match to protein family HMM PF05201%3B match to protein family HMM TIGR01035 gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2761 AFE_2762 AFE_2762 AFE_2762 2457560 2459371 + TPR domain protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2762 AFE_2763 AFE_2763 AFE_2763 2459368 2460024 + outer membrane lipoprotein LolB%2C putative identified by match to protein family HMM PF03550%3B match to protein family HMM TIGR00548 gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2763 AFE_2764 AFE_2764 ispE ispE 2460021 2460866 + 4-diphosphocytidyl-2C-methyl-D-erythritol kinase identified by similarity to SP:P24209%3B match to protein family HMM PF00288%3B match to protein family HMM TIGR00154 gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2764 AFE_2765 AFE_2765 AFE_2765 2460870 2460946 + tRNA-Gln tRNA gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2765 AFE_2766 AFE_2766 prsA prsA 2460994 2461941 + ribose-phosphate pyrophosphokinase identified by similarity to SP:P08330%3B match to protein family HMM PF00156%3B match to protein family HMM TIGR01251 gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2766 AFE_2767 AFE_2767 AFE_2767 2462003 2462080 + tRNA-His tRNA gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2767 AFE_2768 AFE_2768 AFE_2768 2462294 2462674 - transposase%2C degenerate gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2768 AFE_2769 AFE_2769 AFE_2769 2462775 2464097 - restriction endonuclease%2C putative identified by match to protein family HMM PF01396%3B match to protein family HMM PF04471 gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2769 AFE_2770 AFE_2770 AFE_2770 2464251 2464662 - PIN domain protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:CAD84409.1 pseudogene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2770 AFE_2771 AFE_2771 AFE_2771 2464656 2464895 - SpoVT/AbrB like domain protein gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2771 AFE_2772 AFE_2772 AFE_2772 2465025 2465279 + hypothetical protein identified by glimmer%3B putative gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2772 AFE_2773 AFE_2773 yghU yghU 2465564 2466445 - glutathione S-transferase family protein YghU identified by similarity to SP:Q46845%3B match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2773 AFE_2774 AFE_2774 AFE_2774 2466545 2466787 - transposase%2C degenerate gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2774 AFE_2775 AFE_2775 AFE_2775 2467094 2467879 - membrane protein identified by match to protein family HMM PF01925 gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2775 AFE_2776 AFE_2776 AFE_2776 2467945 2469552 - benzoylformate decarboxylase identified by similarity to SP:P20906%3B match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776 gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2776 AFE_2777 AFE_2777 AFE_2777 2469780 2470400 - conserved domain protein identified by similarity to GB:CAB62690.1 gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2777 AFE_2778 AFE_2778 AFE_2778 2470432 2470734 - hypothetical protein identified by glimmer%3B putative gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2778 AFE_2779 AFE_2779 AFE_2779 2470925 2472949 - copper-translocating P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2779 AFE_2780 AFE_2780 AFE_2780 2473228 2473620 + hypothetical protein identified by glimmer%3B putative gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2780 AFE_2781 AFE_2781 AFE_2781 2473714 2474103 + cation efflux system protein%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to SP:P38054 pseudogene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2781 AFE_2782 AFE_2782 AFE_2782 2474158 2474520 + cation efflux system protein%2C putative identified by similarity to SP:P77214 gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2782 AFE_2783 AFE_2783 AFE_2783 2474645 2474953 + hypothetical protein identified by glimmer%3B putative gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2783 AFE_2784 AFE_2784 AFE_2784 2475367 2476227 + hypothetical protein identified by glimmer%3B putative gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2784 AFE_2785 AFE_2785 AFE_2785 2476508 2477662 - hypothetical protein identified by glimmer%3B putative gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2785 AFE_2786 AFE_2786 AFE_2786 2477856 2478149 - transposase%2C degenerate gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2786 AFE_2787 AFE_2787 AFE_2787 2477769 2477861 + hypothetical protein identified by glimmer%3B putative gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2787 AFE_2788 AFE_2788 AFE_2788 2478570 2478923 + conserved hypothetical protein identified by match to protein family HMM PF01906 gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2788 AFE_2789 AFE_2789 AFE_2789 2479043 2479825 - hypothetical protein identified by glimmer%3B putative gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2789 AFE_2790 AFE_2790 AFE_2790 2480037 2483105 - type I restriction-modification enzyme%2C R subunit identified by match to protein family HMM PF04313%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00348 gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2790 AFE_2791 AFE_2791 AFE_2791 2483875 2485131 - type I restriction-modification system%2C S subunit identified by match to protein family HMM PF01420 gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2791 AFE_2792 AFE_2792 AFE_2792 2485271 2485492 - conserved hypothetical protein identified by similarity to PIR:A87339 gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2792 AFE_2793 AFE_2793 AFE_2793 2485818 2487395 - type I restriction-modification system%2C M subunit identified by match to protein family HMM PF02384 gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2793 AFE_2794 AFE_2794 AFE_2794 2487482 2487904 + hypothetical protein identified by glimmer%3B putative gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2794 AFE_2795 AFE_2795 AFE_2795 2488255 2488359 + hypothetical protein identified by glimmer%3B putative gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2795 AFE_2796 AFE_2796 AFE_2796 2488606 2489286 - transcriptional regulator%2C ArsR family gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2796 AFE_2797 AFE_2797 AFE_2797 2489396 2489806 + hypothetical protein identified by glimmer%3B putative gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2797 AFE_2798 AFE_2798 ogt-1 ogt-1 2489916 2490440 + methylated-DNA--protein-cysteine methyltransferase identified by similarity to SP:P09168%3B match to protein family HMM PF01035%3B match to protein family HMM TIGR00589 gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2798 AFE_2799 AFE_2799 AFE_2799 2490478 2491968 - transcriptional regulator%2C Ada family/DNA-3-methyladenine glycosylase II identified by similarity to SP:P04395%3B match to protein family HMM PF00165%3B match to protein family HMM PF00730%3B match to protein family HMM PF02805%3B match to protein family HMM PF06029 gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2799 AFE_2800 AFE_2800 AFE_2800 2492200 2492598 + glyoxalase family protein identified by match to protein family HMM PF00903 gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2800 AFE_2801 AFE_2801 AFE_2801 2492595 2493338 + oxidoreductase%2C short-chain dehydrogenase/reductase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM PF08659 gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2801 AFE_2802 AFE_2802 AFE_2802 2493412 2493741 + multidrug resistance protein%2C SMR family identified by match to protein family HMM PF00893 gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2802 AFE_2803 AFE_2803 AFE_2803 2493794 2494336 + FMN reductase%2C NADPH-dependent identified by match to protein family HMM PF03358 gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2803 AFE_2804 AFE_2804 AFE_2804 2494340 2494819 + conserved hypothetical protein identified by similarity to GB:AAQ59281.1 gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2804 AFE_2805 AFE_2805 AFE_2805 2494821 2495306 + conserved hypothetical protein identified by similarity to GB:CAD16379.1%3B match to protein family HMM PF07883 gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2805 AFE_2806 AFE_2806 AFE_2806 2495317 2495964 + conserved hypothetical protein identified by similarity to PIR:B83761 gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2806 AFE_2807 AFE_2807 AFE_2807 2495978 2496634 + transcriptional regulator%2C putative identified by match to protein family HMM PF04299 gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2807 AFE_2808 AFE_2808 AFE_2808 2496676 2496870 - hypothetical protein identified by glimmer%3B putative gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2808 AFE_2809 AFE_2809 AFE_2809 2496917 2497018 - hypothetical protein identified by glimmer%3B putative gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2809 AFE_2810 AFE_2810 AFE_2810 2497006 2497188 - hypothetical protein identified by glimmer%3B putative gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2810 AFE_2811 AFE_2811 AFE_2811 2497202 2497507 - lipoprotein%2C putative gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2811 AFE_2812 AFE_2812 AFE_2812 2497661 2497762 - hypothetical protein identified by glimmer%3B putative gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2812 AFE_2813 AFE_2813 AFE_2813 2497764 2497862 - hypothetical protein identified by glimmer%3B putative gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2813 AFE_2814 AFE_2814 AFE_2814 2497935 2498489 + hypothetical protein identified by glimmer%3B putative gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2814 AFE_2815 AFE_2815 pepP pepP 2498521 2499861 - Xaa-Pro aminopeptidase identified by similarity to SP:P15034%3B match to protein family HMM PF00557%3B match to protein family HMM PF05195 gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2815 AFE_2816 AFE_2816 AFE_2816 2499984 2500424 - hypothetical protein identified by glimmer%3B putative gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2816 AFE_2817 AFE_2817 radA radA 2500594 2501952 - DNA repair protein RadA identified by match to protein family HMM TIGR00416 gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2817 AFE_2818 AFE_2818 alr alr 2501949 2503043 - alanine racemase identified by similarity to SP:P29743%3B match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492 gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2818 AFE_2819 AFE_2819 dnaB dnaB 2503130 2504503 - replicative DNA helicase identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665 gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2819 AFE_2820 AFE_2820 rplI rplI 2504518 2504964 - ribosomal protein L9 identified by similarity to SP:P02418%3B match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158 gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2820 AFE_2821 AFE_2821 AFE_2821 2505002 2505583 - hypothetical protein identified by glimmer%3B putative gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2821 AFE_2822 AFE_2822 AFE_2822 2505559 2505915 - hypothetical protein identified by glimmer%3B putative gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2822 AFE_2823 AFE_2823 rpS18 rpS18 2505931 2506209 - ribosomal protein S18 identified by similarity to SP:P02374%3B match to protein family HMM PF01084%3B match to protein family HMM TIGR00165 gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2823 AFE_2824 AFE_2824 rpsF rpsF 2506226 2506630 - ribosomal protein S6 identified by similarity to SP:P02358%3B match to protein family HMM PF01250%3B match to protein family HMM TIGR00166 gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2824 AFE_2825 AFE_2825 nagZ nagZ 2506755 2507819 - beta-hexosaminidase identified by similarity to SP:P75949%3B match to protein family HMM PF00933 gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2825 AFE_2826 AFE_2826 AFE_2826 2507803 2509944 - membrane protein%2C putative gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2826 AFE_2827 AFE_2827 AFE_2827 2509945 2510499 - ErfK/YbiS/YcfS/YnhG family protein identified by match to protein family HMM PF03734 gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2827 AFE_2828 AFE_2828 rumA rumA 2510468 2511790 - 23S rRNA (uracil-5-)-methyltransferase identified by similarity to SP:P55135%3B match to protein family HMM PF01938%3B match to protein family HMM PF05958%3B match to protein family HMM TIGR00479 gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2828 AFE_2829 AFE_2829 AFE_2829 2511765 2512574 - conserved hypothetical protein identified by similarity to PIR:H81856 gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2829 AFE_2830 AFE_2830 AFE_2830 2512583 2513011 - conserved hypothetical protein identified by similarity to GB:CAD85351.1 gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2830 AFE_2831 AFE_2831 AFE_2831 2513281 2515320 - hypothetical protein identified by glimmer%3B putative gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2831 AFE_2832 AFE_2832 cysM cysM 2515346 2516230 - cysteine synthase B identified by similarity to SP:P16703%3B match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01138 gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2832 AFE_2833 AFE_2833 pgl pgl 2516336 2517046 + 6-phosphogluconolactonase identified by match to protein family HMM TIGR01198 gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2833 AFE_2834 AFE_2834 AFE_2834 2517120 2518058 - SPFH/Band 7 domain protein identified by match to protein family HMM PF01145 gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2834 AFE_2835 AFE_2835 AFE_2835 2518034 2518495 - conserved hypothetical protein identified by match to protein family HMM PF01957 gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2835 AFE_2836 AFE_2836 glgB glgB 2518511 2520709 - 1%2C4-alpha-glucan branching enzyme identified by match to protein family HMM PF00128%3B match to protein family HMM PF02806%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR01515 gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2836 AFE_2837 AFE_2837 AFE_2837 2520663 2520866 - hypothetical protein identified by glimmer%3B putative gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2837 AFE_2838 AFE_2838 glgC glgC 2520952 2522259 + glucose-1-phosphate adenylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02091 gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2838 AFE_2839 AFE_2839 AFE_2839 2522265 2523971 + glycosyl hydrolase%2C family 57 identified by match to protein family HMM PF03065 gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2839 AFE_2840 AFE_2840 AFE_2840 2523968 2525986 + glycosyl hydrolase%2C family 57 identified by match to protein family HMM PF03065%3B match to protein family HMM PF09095 gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2840 AFE_2841 AFE_2841 AFE_2841 2525979 2526926 + ROK family protein identified by match to protein family HMM PF00480 gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2841 AFE_2842 AFE_2842 murI murI 2526926 2527735 + glutamate racemase identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00067 gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2842 AFE_2843 AFE_2843 AFE_2843 2527748 2529040 - conserved hypothetical protein identified by similarity to GB:AAM41637.1%3B match to protein family HMM PF04286 gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2843 AFE_2844 AFE_2844 AFE_2844 2529207 2529395 + membrane protein%2C putative gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2844 AFE_2845 AFE_2845 ssb-1 ssb-1 2529538 2530008 - single-strand binding protein identified by similarity to SP:P28046%3B match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2845 AFE_2846 AFE_2846 AFE_2846 2532872 2533612 - hypothetical protein identified by glimmer%3B putative gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2846 AFE_2847 AFE_2847 uvrA uvrA 2530095 2532899 + excinuclease ABC%2C A subunit identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630 gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2847 AFE_2848 AFE_2848 AFE_2848 2533634 2534503 + thioredoxin%2C putative identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2848 AFE_2849 AFE_2849 AFE_2849 2534640 2536160 + serine protease%2C DO/DeqQ family identified by similarity to GB:AAN67052.1%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037 gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2849 AFE_2850 AFE_2850 xerD xerD 2536180 2537088 - tyrosine recombinase XerD identified by similarity to SP:P21891%3B match to protein family HMM PF00589%3B match to protein family HMM PF02899%3B match to protein family HMM TIGR02225 gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2850 AFE_2851 AFE_2851 AFE_2851 2537140 2538348 - hypothetical protein identified by glimmer%3B putative gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2851 AFE_2852 AFE_2852 rplS rplS 2538390 2538734 - ribosomal protein L19 identified by similarity to SP:P02420%3B match to protein family HMM PF01245%3B match to protein family HMM TIGR01024 gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2852 AFE_2853 AFE_2853 trmD trmD 2538757 2539500 - tRNA (guanine-N1)-methyltransferase identified by similarity to SP:P07020%3B match to protein family HMM PF01746%3B match to protein family HMM TIGR00088 gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2853 AFE_2854 AFE_2854 rimM rimM 2539500 2540015 - 16S rRNA processing protein RimM identified by match to protein family HMM PF01782%3B match to protein family HMM PF05239%3B match to protein family HMM TIGR02273 gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2854 AFE_2855 AFE_2855 rpsP rpsP 2539999 2540259 - ribosomal protein S16 identified by similarity to SP:P21474%3B match to protein family HMM PF00886%3B match to protein family HMM TIGR00002 gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2855 AFE_2856 AFE_2856 ffh ffh 2540330 2541706 - signal recognition particle protein identified by similarity to SP:P07019%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959 gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2856 AFE_2857 AFE_2857 arsH arsH 2541813 2542526 - arsenical resistance protein ArsH identified by similarity to GB:AAF69240.1%3B match to protein family HMM PF03358%3B match to protein family HMM TIGR02690 gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2857 AFE_2858 AFE_2858 arsB arsB 2542541 2543851 - arsenical pump membrane protein identified by similarity to GB:AAF69238.1%3B match to protein family HMM PF02040%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00935 gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2858 AFE_2859 AFE_2859 arsR arsR 2543945 2544301 + transcriptional regulator%2C ArsR identified by match to protein family HMM PF01022 gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2859 AFE_2860 AFE_2860 arsC arsC 2544301 2544792 + arsenate reductase identified by similarity to GB:AAF69239.1%3B match to protein family HMM PF01451 gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2860 AFE_2861 AFE_2861 AFE_2861 2545040 2546077 + secretion protein%2C HlyD family identified by match to protein family HMM PF00529 gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2861 AFE_2862 AFE_2862 AFE_2862 2546081 2547859 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2862 AFE_2863 AFE_2863 AFE_2863 2547856 2548971 + ABC transporter%2C permease protein%2C putative identified by similarity to SP:P75775%3B match to protein family HMM PF01061 gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2863 AFE_2864 AFE_2864 AFE_2864 2548971 2550080 + ABC transporter%2C permease protein%2C putative identified by similarity to SP:P75774%3B match to protein family HMM PF01061 gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2864 AFE_2865 AFE_2865 AFE_2865 2550043 2550432 + hypothetical protein identified by glimmer%3B putative gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2865 AFE_2866 AFE_2866 AFE_2866 2550444 2550725 - hypothetical protein identified by glimmer%3B putative gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2866 AFE_2867 AFE_2867 AFE_2867 2550953 2551216 - thioredoxin family protein gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2867 AFE_2868 AFE_2868 AFE_2868 2551275 2551736 + conserved hypothetical protein identified by similarity to PIR:D70379%3B match to protein family HMM PF01814 gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2868 AFE_2869 AFE_2869 AFE_2869 2551729 2552175 + glycine cleavage system H protein%2C putative identified by similarity to SP:P23884%3B match to protein family HMM PF01597 gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2869 AFE_2870 AFE_2870 AFE_2870 2552221 2552730 - hypothetical protein identified by glimmer%3B putative gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2870 AFE_2871 AFE_2871 AFE_2871 2552735 2552845 - hypothetical protein identified by glimmer%3B putative gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2871 AFE_2872 AFE_2872 AFE_2872 2553045 2553479 - conserved hypothetical protein identified by similarity to GB:CAD77926.1%3B match to protein family HMM PF02643 gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2872 AFE_2873 AFE_2873 AFE_2873 2555038 2555226 - hypothetical protein identified by glimmer%3B putative gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2873 AFE_2874 AFE_2874 AFE_2874 2555494 2555601 - hypothetical protein identified by glimmer%3B putative gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2874 AFE_2875 AFE_2875 AFE_2875 2555628 2556551 - transcriptional regulator%2C LysR family identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2875 AFE_2876 AFE_2876 AFE_2876 2556664 2557287 + conserved hypothetical protein identified by similarity to GB:AAM72097.1 gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2876 AFE_2877 AFE_2877 AFE_2877 2558152 2560263 - conserved hypothetical protein identified by similarity to SP:P76393 gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2877 AFE_2878 AFE_2878 AFE_2878 2558049 2558165 + hypothetical protein identified by glimmer%3B putative gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2878 AFE_2879 AFE_2879 AFE_2879 2560260 2561024 - conserved hypothetical protein identified by similarity to SP:P76395 gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2879 AFE_2880 AFE_2880 AFE_2880 2561031 2561708 - von Willebrand factor type A domain protein identified by match to protein family HMM PF00092 gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2880 AFE_2881 AFE_2881 AFE_2881 2561991 2562464 - transposase%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to GB:AAR33383.1 pseudogene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2881 AFE_2882 AFE_2882 AFE_2882 2562800 2563726 - uracil-DNA glycosylase family 4 protein identified by match to protein family HMM PF03167%3B match to protein family HMM TIGR00758 gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2882 AFE_2883 AFE_2883 AFE_2883 2563893 2564963 + choloylglycine hydrolase%2C putative identified by similarity to SP:P54965%3B match to protein family HMM PF02275 gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2883 AFE_2884 AFE_2884 AFE_2884 2564977 2565123 - hypothetical protein identified by glimmer%3B putative gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2884 AFE_2885 AFE_2885 AFE_2885 2565176 2565559 - PemK family protein identified by similarity to SP:P13976%3B match to protein family HMM PF02452 gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2885 AFE_2886 AFE_2886 AFE_2886 2565556 2565807 - PemI family protein identified by similarity to SP:P18534%3B match to protein family HMM PF04014 gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2886 AFE_2887 AFE_2887 AFE_2887 2565965 2566708 + hypothetical protein identified by glimmer%3B putative gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2887 AFE_2888 AFE_2888 AFE_2888 2566811 2567227 - PIN domain protein identified by match to protein family HMM PF01850 gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2888 AFE_2889 AFE_2889 AFE_2889 2567214 2567447 - transcriptional regulator%2C AbrB family identified by match to protein family HMM PF04014 gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2889 AFE_2890 AFE_2890 AFE_2890 2567446 2567706 + hypothetical protein identified by glimmer%3B putative gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2890 AFE_2891 AFE_2891 AFE_2891 2567803 2568153 + conserved hypothetical protein identified by similarity to GB:AAM41875.1 gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2891 AFE_2892 AFE_2892 AFE_2892 2570109 2570411 - conserved hypothetical protein identified by similarity to PIR:A95333 gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2892 AFE_2893 AFE_2893 AFE_2893 2568250 2570112 + ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF02463 gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2893 AFE_2894 AFE_2894 AFE_2894 2570425 2570688 - hypothetical protein identified by glimmer%3B putative gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2894 AFE_2895 AFE_2895 AFE_2895 2570733 2572487 - peptidoglycan synthetase FtsI %2C putative identified by similarity to SP:P04286%3B match to protein family HMM PF00905%3B match to protein family HMM PF03717 gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2895 AFE_2896 AFE_2896 AFE_2896 2572636 2574696 - O-antigen polymerase family protein identified by match to protein family HMM PF04932 gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2896 AFE_2897 AFE_2897 AFE_2897 2574693 2574926 - hypothetical protein identified by glimmer%3B putative gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2897 AFE_2898 AFE_2898 AFE_2898 2575012 2575090 - tRNA-Pro tRNA gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2898 AFE_2899 AFE_2899 ispB ispB 2575100 2576068 - octaprenyl-diphosphate synthase identified by similarity to SP:P19641%3B match to protein family HMM PF00348 gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2899 AFE_2900 AFE_2900 AFE_2900 2576177 2577133 - conserved hypothetical protein identified by similarity to GB:AAC41400.1 gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2900 AFE_2901 AFE_2901 ntrC ntrC 2577223 2578629 - nitrogen regulation protein NR(I) identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01818 gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2901 AFE_2902 AFE_2902 ntrB ntrB 2578626 2579711 - nitrogen regulation protein NR(II) identified by similarity to SP:P06218%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF08448 gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2902 AFE_2903 AFE_2903 AFE_2903 2580021 2580791 + conserved hypothetical protein identified by similarity to PIR:F83429 gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2903 AFE_2904 AFE_2904 AFE_2904 2580788 2580985 + hypothetical protein identified by glimmer%3B putative gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2904 AFE_2905 AFE_2905 AFE_2905 2581107 2582570 + conserved hypothetical protein identified by similarity to SP:Q55587%3B match to protein family HMM PF04169%3B match to protein family HMM PF04174 gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2905 AFE_2906 AFE_2906 AFE_2906 2582555 2583541 + conserved hypothetical protein identified by similarity to GB:CAE19498.1%3B match to protein family HMM PF04168 gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2906 AFE_2907 AFE_2907 AFE_2907 2583581 2586943 + transglutaminase-like domain protein identified by match to protein family HMM PF01841%3B match to protein family HMM PF08379 gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2907 AFE_2908 AFE_2908 AFE_2908 2587096 2587233 - hypothetical protein identified by glimmer%3B putative gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2908 AFE_2909 AFE_2909 AFE_2909 2589332 2589466 - hypothetical protein identified by glimmer%3B putative gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2909 AFE_2910 AFE_2910 AFE_2910 2587401 2589335 + conserved hypothetical protein identified by match to protein family HMM PF06798%3B match to protein family HMM PF08298 gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2910 AFE_2911 AFE_2911 amt-2 amt-2 2589616 2590932 + ammonium transporter identified by match to protein family HMM PF00909%3B match to protein family HMM TIGR00836 gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2911 AFE_2912 AFE_2912 AFE_2912 2591034 2592338 + conserved hypothetical protein identified by similarity to SP:Q8Z6E7%3B match to protein family HMM PF04285 gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2912 AFE_2913 AFE_2913 AFE_2913 2592331 2593806 + SpoVR like family protein identified by match to protein family HMM PF04293 gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2913 AFE_2914 AFE_2914 AFE_2914 2593988 2595160 + hypothetical protein identified by glimmer%3B putative gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2914 AFE_2915 AFE_2915 glnK-1 glnK-1 2595214 2595552 + nitrogen regulatory protein P-II 2 identified by similarity to SP:P38504%3B match to protein family HMM PF00543 gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2915 AFE_2916 AFE_2916 amt-1 amt-1 2595607 2596911 + ammonium transporter identified by match to protein family HMM PF00909%3B match to protein family HMM TIGR00836 gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2916 AFE_2917 AFE_2917 AFE_2917 2597010 2597723 + glutamine amidotransferase class-I domain protein identified by match to protein family HMM PF00117 gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2917 AFE_2918 AFE_2918 AFE_2918 2597728 2598114 - lipoprotein%2C putative gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2918 AFE_2919 AFE_2919 AFE_2919 2598362 2598733 + lipoprotein%2C putative identified by match to protein family HMM PF05433 gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2919 AFE_2920 AFE_2920 AFE_2920 2600117 2600416 - conserved hypothetical protein identified by similarity to GB:AAM72618.1 gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2920 AFE_2921 AFE_2921 AFE_2921 2599051 2600136 + rare lipoprotein A%2C putative identified by similarity to SP:P10100%3B match to protein family HMM PF03330%3B match to protein family HMM TIGR00413 gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2921 AFE_2922 AFE_2922 AFE_2922 2600422 2601648 - cation channel protein%2C putative identified by similarity to SP:P31069%3B match to protein family HMM PF02254%3B match to protein family HMM PF07885 gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2922 AFE_2923 AFE_2923 AFE_2923 2601850 2603019 - D-alanyl-D-alanine carboxypeptidase identified by similarity to SP:P08506%3B match to protein family HMM PF00768 gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2923 AFE_2924 AFE_2924 pgi pgi 2603131 2604750 - glucose-6-phosphate isomerase identified by similarity to SP:P11537%3B match to protein family HMM PF00342 gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2924 AFE_2925 AFE_2925 AFE_2925 2605194 2606885 + dolichyl-phosphate-mannose-protein mannosyltransferase family protein identified by match to protein family HMM PF02366 gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2925 AFE_2926 AFE_2926 AFE_2926 2606999 2607376 + crcB protein%2C putative identified by match to protein family HMM PF02537 gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2926 AFE_2927 AFE_2927 AFE_2927 2607387 2607704 + conserved hypothetical protein identified by similarity to GB:AAO90530.1%3B match to protein family HMM PF02641 gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2927 AFE_2928 AFE_2928 AFE_2928 2607813 2608676 + hypothetical protein identified by glimmer%3B putative gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2928 AFE_2929 AFE_2929 cfa cfa 2608778 2610037 + cyclopropane-fatty-acyl-phospholipid synthase identified by match to protein family HMM PF02353%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2929 AFE_2930 AFE_2930 AFE_2930 2610131 2610712 + membrane protein%2C putative identified by similarity to GB:AAO81141.1%3B match to protein family HMM PF06736 gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2930 AFE_2931 AFE_2931 recC recC 2610843 2614235 + exodeoxyribonuclease V%2C gamma subunit identified by match to protein family HMM PF04257%3B match to protein family HMM TIGR01450 gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2931 AFE_2932 AFE_2932 recB recB 2614232 2617828 + exodeoxyribonuclease V%2C beta subunit identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR00609 gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2932 AFE_2933 AFE_2933 recD recD 2617837 2619777 + exodeoxyribonuclease V%2C alpha subunit identified by match to protein family HMM TIGR01447 gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2933 AFE_2934 AFE_2934 AFE_2934 2620110 2620874 + transcriptional regulator%2C putative identified by match to protein family HMM PF00486 gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2934 AFE_2935 AFE_2935 AFE_2935 2620987 2623392 + TonB-dependent receptor identified by match to protein family HMM PF00593 gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2935 AFE_2936 AFE_2936 AFE_2936 2623588 2625240 + conserved hypothetical protein gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2936 AFE_2937 AFE_2937 AFE_2937 2625277 2626913 - ISAfe4%2C transposase orf3%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error pseudogene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2937 AFE_2938 AFE_2938 AFE_2938 2626963 2627310 - ISAfe4%2C transposase orf2 identified by match to protein family HMM PF05717 gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2938 AFE_2939 AFE_2939 AFE_2939 2627301 2627633 - ISAfe4%2C tranposase orf1 Assignment based on BLAST search at the ISFinder database%2C and proximity to other transposase ORFs. gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2939 AFE_2940 AFE_2940 AFE_2940 2627701 2628435 + TonB-dependent receptor domain protein gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2940 AFE_2941 AFE_2941 AFE_2941 2629162 2629293 - hypothetical protein identified by glimmer%3B putative gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2941 AFE_2942 AFE_2942 AFE_2942 2628629 2629207 + hypothetical protein identified by glimmer%3B putative gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2942 AFE_2943 AFE_2943 AFE_2943 2629355 2629639 + hypothetical protein identified by glimmer%3B putative gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2943 AFE_2944 AFE_2944 AFE_2944 2630001 2632577 - cation transporting P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494 gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2944 AFE_2945 AFE_2945 msrB msrB 2632726 2633151 - methionine-R-sulfoxide reductase identified by similarity to SP:P39903%3B match to protein family HMM PF01641%3B match to protein family HMM TIGR00357 gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2945 AFE_2946 AFE_2946 msrA msrA 2633157 2633753 - peptide-methionine (S)-S-oxide reductase identified by match to protein family HMM PF01625%3B match to protein family HMM TIGR00401 gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2946 AFE_2947 AFE_2947 AFE_2947 2633905 2634813 + thiol:disulfide interchange protein DsbG%2C putative identified by similarity to SP:P77202 gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2947 AFE_2948 AFE_2948 nadD nadD 2634873 2635529 + nicotinate (nicotinamide) nucleotide adenylyltransferase identified by similarity to SP:P52085%3B match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00482 gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2948 AFE_2949 AFE_2949 AFE_2949 2635553 2635909 + iojap-related protein identified by match to protein family HMM PF02410%3B match to protein family HMM TIGR00090 gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2949 AFE_2950 AFE_2950 AFE_2950 2635916 2636389 + conserved hypothetical protein identified by similarity to SP:Q87VV9%3B match to protein family HMM PF02590 gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2950 AFE_2951 AFE_2951 AFE_2951 2636403 2636834 + lipoprotein%2C putative gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2951 AFE_2952 AFE_2952 AFE_2952 2636834 2637712 + hypothetical protein identified by glimmer%3B putative gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2952 AFE_2953 AFE_2953 maf-1 maf-1 2637709 2638296 + maf protein identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2953 AFE_2954 AFE_2954 AFE_2954 2638293 2639783 + ribonuclease%2C Rne/Rng family identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00757 gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2954 AFE_2955 AFE_2955 AFE_2955 2639809 2641182 - sigma-54 dependent DNA-binding response regulator%2C putative identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158 gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2955 AFE_2956 AFE_2956 AFE_2956 2641189 2641653 - hypothetical protein identified by glimmer%3B putative gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2956 AFE_2957 AFE_2957 AFE_2957 2641481 2643001 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2957 AFE_2958 AFE_2958 AFE_2958 2643000 2643635 + hypothetical protein identified by glimmer%3B putative gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2958 AFE_2959 AFE_2959 AFE_2959 2643724 2644005 - conserved hypothetical protein identified by similarity to GB:AAQ61020.1%3B match to protein family HMM PF04362 gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2959 AFE_2960 AFE_2960 AFE_2960 2644457 2645929 + mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase identified by match to protein family HMM PF00483%3B match to protein family HMM PF01050%3B match to protein family HMM PF07883%3B match to protein family HMM TIGR01479 gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2960 AFE_2961 AFE_2961 AFE_2961 2645950 2647065 + capsule polysaccharide export inner-membrane protein identified by similarity to SP:P32014 gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2961 AFE_2962 AFE_2962 ctrC ctrC 2647404 2648249 + capsule polysaccharide exporter%2C inner-membrane protein CtrC identified by similarity to SP:P32015%3B match to protein family HMM PF01061 gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2962 AFE_2963 AFE_2963 ctrD ctrD 2648246 2648899 + capsule polysaccharide exporter%2C ATP-binding protein identified by similarity to SP:P32016%3B match to protein family HMM PF00005 gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2963 AFE_2964 AFE_2964 AFE_2964 2648991 2649740 + methyltransferase%2C FkbM family domain protein identified by match to protein family HMM TIGR01444 gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2964 AFE_2965 AFE_2965 AFE_2965 2649792 2650433 + hypothetical protein identified by glimmer%3B putative gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2965 AFE_2966 AFE_2966 AFE_2966 2650382 2650552 + hypothetical protein identified by glimmer%3B putative gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2966 AFE_2967 AFE_2967 AFE_2967 2650455 2656202 + glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2967 AFE_2968 AFE_2968 AFE_2968 2656290 2657861 + hypothetical protein identified by glimmer%3B putative gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2968 AFE_2969 AFE_2969 AFE_2969 2657861 2658676 + hypothetical protein identified by glimmer%3B putative gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2969 AFE_2970 AFE_2970 cysD-1 cysD-1 2658831 2659712 + sulfate adenylyltransferase%2C small subunit identified by match to protein family HMM PF01507%3B match to protein family HMM TIGR02039 gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2970 AFE_2971 AFE_2971 cysNC cysNC 2659712 2661526 + sulfate adenylate transferase%2C large subunit/adenylylsulfate kinase identified by match to protein family HMM PF00009%3B match to protein family HMM PF01583%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00455%3B match to protein family HMM TIGR02034 gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2971 AFE_2972 AFE_2972 AFE_2972 2661596 2662822 - ISAfe3%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2972 AFE_2973 AFE_2973 cysQ cysQ 2663162 2663998 + 3'(2')%2C5'-bisphosphate nucleotidase identified by similarity to SP:P22255%3B match to protein family HMM PF00459%3B match to protein family HMM TIGR01331 gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2973 AFE_2974 AFE_2974 AFE_2974 2663976 2665733 + conserved hypothetical protein identified by similarity to GB:AAO77300.1 gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2974 AFE_2975 AFE_2975 AFE_2975 2665813 2666985 + capsule polysaccharide export protein%2C BexD/CtrA/VexA family identified by similarity to SP:P22236%3B match to protein family HMM PF02563 gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2975 AFE_2976 AFE_2976 AFE_2976 2666999 2668168 + glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2976 AFE_2977 AFE_2977 gmd-1 gmd-1 2668314 2669333 + GDP-mannose 4%2C6-dehydratase identified by similarity to SP:Q51366%3B match to protein family HMM PF01370%3B match to protein family HMM TIGR01472 gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2977 AFE_2978 AFE_2978 AFE_2978 2669424 2670116 + conserved domain protein identified by match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2978 AFE_2979 AFE_2979 AFE_2979 2670125 2670943 + WbbD domain protein identified by similarity to GB:AAF04382.1%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2979 AFE_2980 AFE_2980 AFE_2980 2670987 2671283 + hypothetical protein identified by glimmer%3B putative gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2980 AFE_2981 AFE_2981 AFE_2981 2671270 2671395 + hypothetical protein identified by glimmer%3B putative gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2981 AFE_2982 AFE_2982 AFE_2982 2671392 2671529 + conserved hypothetical protein identified by similarity to GB:AAP84138.1 gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2982 AFE_2983 AFE_2983 AFE_2983 2671682 2671924 + prevent-host-death family protein identified by similarity to SP:Q06253%3B match to protein family HMM TIGR01552 gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2983 AFE_2984 AFE_2984 AFE_2984 2671924 2672376 + PIN domain protein identified by match to protein family HMM PF01850 gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2984 AFE_2985 AFE_2985 AFE_2985 2672501 2674357 - ABC transporter%2C permease/ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2985 AFE_2986 AFE_2986 AFE_2986 2674419 2674856 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2986 AFE_2987 AFE_2987 AFE_2987 2674880 2676511 - peptide ABC transporter%2C periplasmic peptide-binding protein identified by similarity to SP:P42061%3B match to protein family HMM PF00496 gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2987 AFE_2988 AFE_2988 AFE_2988 2676618 2677628 - peptide ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2988 AFE_2989 AFE_2989 AFE_2989 2677625 2678626 - peptide ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF08352%3B match to protein family HMM TIGR01727 gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2989 AFE_2990 AFE_2990 AFE_2990 2678694 2679584 - peptide ABC transporter%2C permease protein identified by match to protein family HMM PF00528 gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2990 AFE_2991 AFE_2991 AFE_2991 2679598 2680557 - peptide ABC transporter%2C permease protein identified by similarity to SP:P50989%3B match to protein family HMM PF00528 gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2991 AFE_2992 AFE_2992 AFE_2992 2680603 2682099 - peptide ABC transporter%2C periplasmic peptide-binding protein identified by similarity to SP:P42061%3B match to protein family HMM PF00496 gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2992 AFE_2993 AFE_2993 AFE_2993 2682243 2684084 - conserved hypothetical protein identified by similarity to GB:AAM36869.1 gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2993 AFE_2994 AFE_2994 AFE_2994 2684077 2686020 - conserved hypothetical protein identified by similarity to GB:AAM36869.1 gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2994 AFE_2995 AFE_2995 AFE_2995 2686026 2686244 - conserved domain protein identified by similarity to GB:CAD11970.1 gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2995 AFE_2996 AFE_2996 AFE_2996 2686541 2686681 - hypothetical protein identified by glimmer%3B putative gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2996 AFE_2997 AFE_2997 AFE_2997 2686867 2687013 - hypothetical protein identified by glimmer%3B putative gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2997 AFE_2998 AFE_2998 AFE_2998 2687000 2689399 + TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2998 AFE_2999 AFE_2999 AFE_2999 2689481 2690113 + integral membrane protein%2C MarC family identified by match to protein family HMM PF01914%3B match to protein family HMM TIGR00427 gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_2999 AFE_3000 AFE_3000 AFE_3000 2690132 2691199 + lactate/malate dehydrogenase family protein identified by similarity to SP:Q60176%3B match to protein family HMM PF00056 gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3000 AFE_3001 AFE_3001 AFE_3001 2691187 2691459 + ACT domain protein identified by match to protein family HMM PF01842 gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3001 AFE_3002 AFE_3002 AFE_3002 2691531 2692226 + TonB family protein gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3002 AFE_3003 AFE_3003 AFE_3003 2692264 2692911 + MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618 gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3003 AFE_3004 AFE_3004 AFE_3004 2692943 2693341 + biopolymer transport protein%2C ExbD/TolR family identified by match to protein family HMM PF02472 gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3004 AFE_3005 AFE_3005 AFE_3005 2693374 2693856 + acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3005 AFE_3006 AFE_3006 AFE_3006 2693961 2694062 + hypothetical protein identified by glimmer%3B putative gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3006 AFE_3007 AFE_3007 AFE_3007 2694130 2694348 - hypothetical protein identified by glimmer%3B putative gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3007 AFE_3008 AFE_3008 AFE_3008 2694332 2695906 + glycosyl transferase%2C group 1 identified by match to protein family HMM PF00534 gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3008 AFE_3009 AFE_3009 AFE_3009 2695985 2696131 + hypothetical protein identified by glimmer%3B putative gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3009 AFE_3010 AFE_3010 AFE_3010 2696128 2703588 + polyketide synthase%2C type I%2C putative identified by similarity to GB:AAK26474.1%3B match to protein family HMM PF00106%3B match to protein family HMM PF00107%3B match to protein family HMM PF00109%3B match to protein family HMM PF00550%3B match to protein family HMM PF00698%3B match to protein family HMM PF02801%3B match to protein family HMM PF08240%3B match to protein family HMM PF08659 gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3010 AFE_3011 AFE_3011 AFE_3011 2703590 2704915 + 8-amino-7-oxononanoate synthase%2C putative identified by match to protein family HMM PF00155%3B match to protein family HMM PF00202 gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3011 AFE_3012 AFE_3012 AFE_3012 2704984 2706027 + capsule polysaccharide biosynthesis protein identified by match to protein family HMM PF05159 gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3012 AFE_3013 AFE_3013 AFE_3013 2706024 2707334 + capsule polysaccharide modification protein identified by similarity to SP:Q05014%3B match to protein family HMM PF05159 gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3013 AFE_3014 AFE_3014 AFE_3014 2707241 2708014 + oxidoreductase%2C short-chain dehydrogenase/reductase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3014 AFE_3015 AFE_3015 mutY mutY 2709573 2710682 - A/G-specific adenine glycosylase identified by match to protein family HMM PF00293%3B match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01084 gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3015 AFE_3016 AFE_3016 AFE_3016 2708007 2709599 + capsular polysaccharide biosynthesis protein%2C putative identified by similarity to GB:CAA45491.1%3B match to protein family HMM PF00884 gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3016 AFE_3017 AFE_3017 AFE_3017 2710679 2712019 - hypothetical protein identified by glimmer%3B putative gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3017 AFE_3018 AFE_3018 ptsI ptsI 2711949 2713661 - phosphoenolpyruvate-protein phosphotransferase identified by match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417 gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3018 AFE_3019 AFE_3019 ptsH ptsH 2713658 2713930 - phosphocarrier protein HPr identified by similarity to SP:P23537%3B match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3019 AFE_3020 AFE_3020 AFE_3020 2714038 2714454 - PTS system%2C IIA component%2C putative identified by match to protein family HMM PF03610 gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3020 AFE_3021 AFE_3021 AFE_3021 2714451 2715350 - ATPase identified by match to protein family HMM PF03668 gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3021 AFE_3022 AFE_3022 hprK hprK 2715350 2716282 - Hpr(Ser) kinase/phosphatase identified by match to protein family HMM PF07475 gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3022 AFE_3023 AFE_3023 AFE_3023 2716337 2716783 - phosphoenolpyruvate-dependent sugar PTS system%2C EIIA component identified by match to protein family HMM PF00359 gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3023 AFE_3024 AFE_3024 yfiA yfiA 2716790 2717131 - ribosomal subunit interface protein identified by similarity to SP:P24694%3B match to protein family HMM PF02482%3B match to protein family HMM TIGR00741 gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3024 AFE_3025 AFE_3025 rpoN rpoN 2717235 2718662 - RNA polymerase sigma-54 factor identified by similarity to SP:P24695%3B match to protein family HMM PF00309%3B match to protein family HMM PF04552%3B match to protein family HMM PF04963%3B match to protein family HMM TIGR02395 gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3025 AFE_3026 AFE_3026 AFE_3026 2718675 2719400 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3026 AFE_3027 AFE_3027 AFE_3027 2719397 2719945 - conserved hypothetical protein identified by match to protein family HMM PF03968%3B match to protein family HMM TIGR03002 gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3027 AFE_3028 AFE_3028 AFE_3028 2719917 2720486 - hypothetical protein identified by glimmer%3B putative gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3028 AFE_3029 AFE_3029 kdsC kdsC 2720512 2721066 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase identified by similarity to SP:P45396%3B match to protein family HMM TIGR01662%3B match to protein family HMM TIGR01670 gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3029 AFE_3030 AFE_3030 AFE_3030 2721063 2722049 - sugar isomerase%2C KpsF/GutQ family identified by similarity to SP:P45395%3B match to protein family HMM PF00571%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR00393 gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3030 AFE_3031 AFE_3031 AFE_3031 2722369 2722803 - hypothetical protein identified by glimmer%3B putative gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3031 AFE_3032 AFE_3032 AFE_3032 2722793 2723482 - nucleotidyltransferase family protein identified by match to protein family HMM PF00483 gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3032 AFE_3033 AFE_3033 AFE_3033 2723455 2724483 - phosphotransferase%2C putative identified by match to protein family HMM PF01636 gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3033 AFE_3034 AFE_3034 AFE_3034 2724591 2726696 + organic solvent tolerance protein%2C putative identified by similarity to SP:P31554%3B match to protein family HMM PF03968%3B match to protein family HMM PF04453 gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3034 AFE_3035 AFE_3035 surA surA 2726819 2728129 + survival protein SurA identified by similarity to SP:P21202%3B match to protein family HMM PF00639%3B match to protein family HMM PF09312 gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3035 AFE_3036 AFE_3036 AFE_3036 2728122 2728928 + ABC-2 type transporter identified by match to protein family HMM PF01061 gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3036 AFE_3037 AFE_3037 AFE_3037 2728939 2729271 + BolA family protein identified by match to protein family HMM PF01722 gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3037 AFE_3038 AFE_3038 AFE_3038 2729303 2729635 + glutaredoxin-related protein identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR00365 gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3038 AFE_3039 AFE_3039 murA murA 2729645 2730916 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase identified by similarity to SP:P28909%3B match to protein family HMM PF00275%3B match to protein family HMM TIGR01072 gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3039 AFE_3040 AFE_3040 hisG hisG 2730913 2731560 + ATP phosphoribosyltransferase identified by similarity to SP:O34520%3B match to protein family HMM PF01634%3B match to protein family HMM TIGR00070 gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3040 AFE_3041 AFE_3041 hisD hisD 2731557 2732858 + histidinol dehydrogenase identified by similarity to SP:O34651%3B match to protein family HMM PF00815%3B match to protein family HMM TIGR00069 gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3041 AFE_3042 AFE_3042 hisC-1 hisC-1 2732855 2733934 + histidinol-phosphate aminotransferase identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR01141 gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3042 AFE_3043 AFE_3043 hisB hisB 2733931 2734530 + imidazoleglycerol-phosphate dehydratase identified by match to protein family HMM PF00475 gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3043 AFE_3044 AFE_3044 hisH hisH 2734527 2735198 + imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit identified by match to protein family HMM PF00117%3B match to protein family HMM PF07685%3B match to protein family HMM TIGR01855 gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3044 AFE_3045 AFE_3045 hisA hisA 2735238 2735966 + phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase identified by similarity to SP:O35006%3B match to protein family HMM PF00977%3B match to protein family HMM TIGR00007 gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3045 AFE_3046 AFE_3046 hisF hisF 2735971 2736732 + imidazoleglycerol phosphate synthase%2C cyclase subunit identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00735 gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3046 AFE_3047 AFE_3047 hisIE hisIE 2736819 2737511 + phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase identified by similarity to SP:O34912%3B match to protein family HMM PF01502%3B match to protein family HMM PF01503%3B match to protein family HMM TIGR03188%3B match to protein family HMM TIGR03456 gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3047 AFE_3048 AFE_3048 tatA tatA 2737591 2737809 + twin-arginine translocation protein%2C TatA/E family identified by similarity to GB:CAC29147.1%3B match to protein family HMM PF02416%3B match to protein family HMM TIGR01411 gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3048 AFE_3049 AFE_3049 tatB tatB 2737816 2738184 + twin-arginine translocation protein TatB identified by similarity to GB:CAC29148.1%3B match to protein family HMM PF02416%3B match to protein family HMM TIGR01410 gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3049 AFE_3050 AFE_3050 tatC tatC 2738323 2739129 + Sec-independent protein translocase TatC identified by match to protein family HMM PF00902%3B match to protein family HMM TIGR00945 gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3050 AFE_3051 AFE_3051 cbbL-1 cbbL-1 2739425 2740846 + ribulose bisphosphate carboxylase%2C large subunit identified by match to protein family HMM PF00016%3B match to protein family HMM PF02788 gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3051 AFE_3052 AFE_3052 cbbS-1 cbbS-1 2740877 2741233 + ribulose bisphosphate carboxylase%2C small subunit identified by match to protein family HMM PF00101 gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3052 AFE_3053 AFE_3053 cbbQ-1 cbbQ-1 2741389 2742192 + CbbQ protein identified by similarity to GB:BAA76361.1%3B match to protein family HMM PF07728%3B match to protein family HMM PF08406 gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3053 AFE_3054 AFE_3054 AFE_3054 2742244 2744562 + von Willebrand factor type A domain protein identified by match to protein family HMM PF00092 gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3054 AFE_3055 AFE_3055 AFE_3055 2744652 2744819 - hypothetical protein identified by glimmer%3B putative gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3055 AFE_3056 AFE_3056 AFE_3056 2744758 2744961 + hypothetical protein identified by glimmer%3B putative gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3056 AFE_3057 AFE_3057 AFE_3057 2744939 2747464 + sensory box-containing diguanylate cyclase%2C putative identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM PF08447%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3057 AFE_3058 AFE_3058 pyrC-1 pyrC-1 2747587 2748861 - dihydroorotase%2C multifunctional complex type identified by similarity to SP:Q59712%3B match to protein family HMM PF01979%3B match to protein family HMM TIGR00857 gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3058 AFE_3059 AFE_3059 pyrB pyrB 2748867 2749850 - aspartate carbamoyltransferase identified by similarity to SP:Q59711%3B match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00670 gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3059 AFE_3060 AFE_3060 pyrR pyrR 2749847 2750353 - PyrR bifunctional protein identified by similarity to SP:P39765%3B match to protein family HMM PF00156 gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3060 AFE_3061 AFE_3061 AFE_3061 2750350 2750781 - conserved hypothetical protein identified by match to protein family HMM PF03652%3B match to protein family HMM TIGR00250 gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3061 AFE_3062 AFE_3062 AFE_3062 2750774 2751331 - conserved hypothetical protein identified by similarity to GB:BAC60875.1%3B match to protein family HMM PF02622 gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3062 AFE_3063 AFE_3063 gshB gshB 2751401 2752339 - glutathione synthetase identified by similarity to SP:P04425%3B match to protein family HMM PF02951%3B match to protein family HMM PF02955%3B match to protein family HMM PF08443%3B match to protein family HMM TIGR01380 gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3063 AFE_3064 AFE_3064 gshA gshA 2752336 2753646 - glutamate--cysteine ligase identified by match to protein family HMM PF08886%3B match to protein family HMM TIGR02049 gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3064 AFE_3065 AFE_3065 citZ citZ 2753656 2754816 - citrate synthase II identified by similarity to SP:P39120%3B match to protein family HMM PF00285%3B match to protein family HMM TIGR01800 gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3065 AFE_3066 AFE_3066 AFE_3066 2754828 2755001 - hypothetical protein identified by glimmer%3B putative gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3066 AFE_3067 AFE_3067 AFE_3067 2755009 2755383 - iron-sulfur cluster assembly accessory protein identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049 gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3067 AFE_3068 AFE_3068 pdhC pdhC 2755513 2758464 - pyruvate dehydrogenase complex%2C E2 and E3 components identified by similarity to PIR:C59237%3B match to protein family HMM PF00070%3B match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3068 AFE_3069 AFE_3069 pdhB pdhB 2758520 2759500 - pyruvate dehydrogenase%2C E1 component%2C pyruvate dehydrogenase beta subunit identified by similarity to PIR:B59237%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3069 AFE_3070 AFE_3070 pdhA pdhA 2759493 2760476 - pyruvate dehydrogenase complex%2C E1 component%2C pyruvate dehydrogenase alpha subunit identified by similarity to PIR:A59237%3B match to protein family HMM PF00676%3B match to protein family HMM TIGR03182 gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3070 AFE_3071 AFE_3071 AFE_3071 2760865 2761143 - hypothetical protein identified by glimmer%3B putative gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3071 AFE_3072 AFE_3072 AFE_3072 2761213 2761557 - hypothetical protein identified by glimmer%3B putative gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3072 AFE_3073 AFE_3073 argC argC 2761822 2762856 - N-acetyl-gamma-glutamyl-phosphate reductase identified by similarity to SP:P23715%3B match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01850 gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3073 AFE_3074 AFE_3074 rpsI rpsI 2762940 2763326 - ribosomal protein S9 identified by similarity to SP:P02363%3B match to protein family HMM PF00380 gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3074 AFE_3075 AFE_3075 rplM rplM 2763339 2763767 - ribosomal protein L13 identified by similarity to SP:P02410%3B match to protein family HMM PF00572%3B match to protein family HMM TIGR01066 gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3075 AFE_3076 AFE_3076 AFE_3076 2763828 2764322 + hypothetical protein identified by glimmer%3B putative gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3076 AFE_3077 AFE_3077 AFE_3077 2764617 2764901 - hypothetical protein identified by glimmer%3B putative gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3077 AFE_3078 AFE_3078 AFE_3078 2765188 2765400 - conserved hypothetical protein identified by similarity to GB:CAD15208.1 gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3078 AFE_3079 AFE_3079 AFE_3079 2765486 2766085 - nitroreductase family protein identified by match to protein family HMM PF00881 gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3079 AFE_3080 AFE_3080 rrfA rrfA 2766249 2766368 - 5S ribosomal RNA rRNA gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3080 AFE_3081 AFE_3081 rrlA rrlA 2766461 2769349 - 23S ribosomal RNA rRNA gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3081 AFE_3082 AFE_3082 AFE_3082 2769589 2769666 - tRNA-Ala tRNA gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3082 AFE_3083 AFE_3083 AFE_3083 2769668 2769746 - tRNA-Ile tRNA gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3083 AFE_3084 AFE_3084 rrsA rrsA 2769835 2771304 - 16S ribosomal RNA rRNA gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3084 AFE_3085 AFE_3085 tyrS tyrS 2771581 2772804 - tyrosyl-tRNA synthetase identified by similarity to SP:P41256%3B match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234 gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3085 AFE_3086 AFE_3086 AFE_3086 2772904 2775195 - plasma-membrane proton-efflux P-type ATPase%2C putative identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494 gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3086 AFE_3087 AFE_3087 AFE_3087 2775176 2775313 - hypothetical protein identified by glimmer%3B putative gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3087 AFE_3088 AFE_3088 AFE_3088 2775299 2775439 + hypothetical protein identified by glimmer%3B putative gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3088 AFE_3089 AFE_3089 panD panD 2775436 2775819 + aspartate 1-decarboxylase identified by similarity to SP:P31664%3B match to protein family HMM PF01476%3B match to protein family HMM PF02261%3B match to protein family HMM TIGR00223 gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3089 AFE_3090 AFE_3090 AFE_3090 2775868 2777061 + membrane protein%2C putative identified by match to protein family HMM PF07690 gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3090 AFE_3091 AFE_3091 AFE_3091 2777065 2777160 + hypothetical protein identified by glimmer%3B putative gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3091 AFE_3092 AFE_3092 ysxC ysxC 2777220 2777906 + ribosome biogenesis GTP-binding protein YsxC identified by similarity to SP:P24253%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR00650%3B match to protein family HMM TIGR03598 gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3092 AFE_3093 AFE_3093 AFE_3093 2777972 2779234 + cation channel protein%2C putative identified by similarity to SP:P31069%3B match to protein family HMM PF00520%3B match to protein family HMM PF02254%3B match to protein family HMM PF07885 gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3093 AFE_3094 AFE_3094 polI polI 2779237 2781936 - DNA polymerase I identified by similarity to SP:P00582%3B match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF01612%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593 gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3094 AFE_3095 AFE_3095 AFE_3095 2781988 2782725 + conserved hypothetical protein TIGR00730 identified by similarity to GB:CAD85380.1%3B match to protein family HMM PF03641%3B match to protein family HMM TIGR00730 gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3095 AFE_3096 AFE_3096 AFE_3096 2782746 2783081 + conserved hypothetical protein identified by similarity to GB:AAQ58453.1 gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3096 AFE_3097 AFE_3097 thrB thrB 2783124 2784056 + homoserine kinase identified by match to protein family HMM PF01636%3B match to protein family HMM TIGR00938 gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3097 AFE_3098 AFE_3098 AFE_3098 2784095 2784418 - hypothetical protein identified by glimmer%3B putative gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3098 AFE_3099 AFE_3099 AFE_3099 2784621 2785223 + hypothetical protein identified by glimmer%3B putative gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3099 AFE_3100 AFE_3100 AFE_3100 2785234 2785641 - competence protein ComEA helix-hairpin-helix repeat protein identified by similarity to GB:CAB44964.1%3B match to protein family HMM PF00633%3B match to protein family HMM TIGR00426 gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3100 AFE_3101 AFE_3101 uvrD uvrD 2785660 2787789 - DNA helicase II identified by match to protein family HMM PF00580 gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3101 AFE_3102 AFE_3102 cbpA cbpA 2787906 2788838 + curved DNA-binding protein identified by similarity to SP:P36659%3B match to protein family HMM PF00226%3B match to protein family HMM PF01556 gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3102 AFE_3103 AFE_3103 AFE_3103 2789156 2789824 + phosphoribosyl transferase domain protein identified by similarity to GB:AAM31476.1%3B match to protein family HMM PF00156 gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3103 AFE_3104 AFE_3104 AFE_3104 2789828 2791558 + DNA polymerase X family protein identified by match to protein family HMM PF00633%3B match to protein family HMM PF02811 gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3104 AFE_3105 AFE_3105 AFE_3105 2791647 2791952 - ISAfe6%2C transposase%2C degenerate identified by similarity to GB:AAK61303.1 gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3105 AFE_3106 AFE_3106 AFE_3106 2792135 2792245 - hypothetical protein identified by glimmer%3B putative gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3106 AFE_3107 AFE_3107 cycA-1 cycA-1 2792679 2793383 + cytochrome c4 identified by match to protein family HMM PF00034 gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3107 AFE_3108 AFE_3108 sdr_1 sdr_1 2793376 2794167 + oxidoreductase%2C short-chain dehydrogenase/reductase family identified by match to protein family HMM PF00106%3B match to protein family HMM PF08659 gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3108 AFE_3109 AFE_3109 petA-1 petA-1 2794266 2794886 + ubiquinol--cytochrome c reductase%2C iron-sulfur subunit identified by match to protein family HMM PF00355%3B match to protein family HMM TIGR01409%3B match to protein family HMM TIGR01416 gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3109 AFE_3110 AFE_3110 petB-1 petB-1 2794914 2796122 + ubiquinol--cytochrome c reductase%2C cytochrome b subunit identified by similarity to SP:P23134%3B match to protein family HMM PF00032%3B match to protein family HMM PF00033 gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3110 AFE_3111 AFE_3111 petC-1 petC-1 2796119 2796847 + ubiquinol--cytochrome c reductase%2C cytochrome c1 subunit identified by match to protein family HMM PF02167 gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3111 AFE_3112 AFE_3112 resB resB 2797400 2799244 + cytochrome c-type biogenesis protein ResB identified by match to protein family HMM PF05140 gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3112 AFE_3113 AFE_3113 resC resC 2799366 2800424 + cytochrome c-type biogenesis protein ResC identified by match to protein family HMM PF01578%3B match to protein family HMM TIGR03144 gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3113 AFE_3114 AFE_3114 AFE_3114 2800604 2800969 + conserved hypothetical protein identified by similarity to PIR:C70335 gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3114 AFE_3115 AFE_3115 AFE_3115 2802475 2802960 - conserved hypothetical protein identified by similarity to SP:O67860 gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3115 AFE_3116 AFE_3116 AFE_3116 2803535 2803921 + conserved hypothetical protein identified by similarity to PIR:C69319 gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3116 AFE_3117 AFE_3117 AFE_3117 2803965 2804195 + conserved hypothetical protein identified by similarity to SP:O29695%3B match to protein family HMM PF01206 gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3117 AFE_3118 AFE_3118 AFE_3118 2804238 2805377 + pyridine nucleotide-disulfide oxidoreductase identified by similarity to SP:Q9R112%3B match to protein family HMM PF07992 gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3118 AFE_3119 AFE_3119 AFE_3119 2806194 2806556 - hypothetical protein identified by glimmer%3B putative gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3119 AFE_3120 AFE_3120 AFE_3120 2806719 2807033 + membrane protein%2C putative gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3120 AFE_3121 AFE_3121 cysJ cysJ 2807385 2809151 + sulfite reductase (NADPH) flavoprotein%2C alpha component identified by match to protein family HMM PF00175%3B match to protein family HMM PF00258%3B match to protein family HMM PF00667 gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3121 AFE_3122 AFE_3122 cysI cysI 2809141 2810832 + sulfite reductase (NADPH) hemoprotein beta-component identified by match to protein family HMM PF01077%3B match to protein family HMM PF03460 gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3122 AFE_3123 AFE_3123 cysH cysH 2810840 2811577 + adenylylsulfate reductase%2C thioredoxin dependent identified by match to protein family HMM PF01507%3B match to protein family HMM TIGR00434%3B match to protein family HMM TIGR02055 gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3123 AFE_3124 AFE_3124 cysD-2 cysD-2 2811574 2812512 + sulfate adenylyltransferase%2C small subunit identified by match to protein family HMM PF01507%3B match to protein family HMM TIGR02039 gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3124 AFE_3125 AFE_3125 cysN cysN 2812512 2813864 + sulfate adenylyltransferase%2C large subunit identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR02034 gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3125 AFE_3126 AFE_3126 cobA cobA 2813970 2814791 + uroporphyrin-III C-methyltransferase identified by similarity to SP:P21631%3B match to protein family HMM PF00590%3B match to protein family HMM TIGR01469 gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3126 AFE_3127 AFE_3127 AFE_3127 2814788 2815141 + conserved hypothetical protein identified by similarity to GB:CAD16125.1%3B match to protein family HMM PF01903 gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3127 AFE_3128 AFE_3128 AFE_3128 2815171 2815677 + hypothetical protein identified by glimmer%3B putative gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3128 AFE_3129 AFE_3129 AFE_3129 2815696 2817099 - voltage-gated chloride channel identified by match to protein family HMM PF00654 gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3129 AFE_3130 AFE_3130 AFE_3130 2817239 2817565 + hypothetical protein identified by glimmer%3B putative gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3130 AFE_3131 AFE_3131 AFE_3131 2817574 2817822 - twin-arginine translocation protein%2C TatA/E family identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411 gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3131 AFE_3132 AFE_3132 AFE_3132 2818259 2818486 + hypothetical protein identified by glimmer%3B putative gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3132 AFE_3133 AFE_3133 AFE_3133 2818547 2819356 - hypothetical protein identified by glimmer%3B putative gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3133 AFE_3134 AFE_3134 AFE_3134 2819723 2819887 + hypothetical protein identified by glimmer%3B putative gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3134 AFE_3135 AFE_3135 AFE_3135 2820227 2820631 + hypothetical protein identified by glimmer%3B putative gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3135 AFE_3136 AFE_3136 AFE_3136 2821701 2822954 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3136 AFE_3137 AFE_3137 AFE_3137 2823014 2823529 + DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF02954 gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3137 AFE_3138 AFE_3138 AFE_3138 2823588 2824229 - oxidoreductase%2C 2OG-Fe(II) oxygenase family identified by match to protein family HMM PF03171 gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3138 AFE_3139 AFE_3139 AFE_3139 2824347 2824874 - hypothetical protein identified by glimmer%3B putative gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3139 AFE_3140 AFE_3140 AFE_3140 2824886 2824978 - hypothetical protein identified by glimmer%3B putative gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3140 AFE_3141 AFE_3141 AFE_3141 2824988 2825428 - Rrf2 family protein identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3141 AFE_3142 AFE_3142 AFE_3142 2825443 2826636 - major facilitator family transporter identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3142 AFE_3143 AFE_3143 cyoE-2 cyoE-2 2826656 2827600 - protoheme IX farnesyltransferase identified by similarity to SP:P56938%3B match to protein family HMM PF01040%3B match to protein family HMM TIGR01473 gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3143 AFE_3144 AFE_3144 AFE_3144 2827616 2828443 - membrane protein%2C putative gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3144 AFE_3145 AFE_3145 AFE_3145 2828694 2828810 - hypothetical protein identified by glimmer%3B putative gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3145 AFE_3146 AFE_3146 rus rus 2828862 2829425 - rusticyanin identified by similarity to SP:P24930%3B match to protein family HMM TIGR03095 gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3146 AFE_3147 AFE_3147 coxD coxD 2829793 2829987 - cytochrome c oxidase%2C aa3-type%2C subunit IV identified by similarity to GB:BAC22706.1 gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3147 AFE_3148 AFE_3148 coxC coxC 2830028 2830582 - cytochrome c oxidase%2C aa3-type%2C subunit III identified by similarity to GB:CAA07036.1 gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3148 AFE_3149 AFE_3149 coxA coxA 2830602 2832485 - cytochrome c oxidase%2C aa3-type%2C subunit I identified by similarity to GB:CAA07035.1%3B match to protein family HMM PF00115 gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3149 AFE_3150 AFE_3150 coxB coxB 2832542 2833306 - cytochrome c oxidase%2C aa3-type%2C subunit II identified by similarity to GB:CAA07034.1%3B match to protein family HMM PF00116 gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3150 AFE_3151 AFE_3151 AFE_3151 2833321 2833872 - conserved hypothetical protein identified by similarity to GB:CAA07033.2 gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3151 AFE_3152 AFE_3152 cyc1 cyc1 2833974 2834666 - cytochrome c552 identified by similarity to SP:P74917%3B match to protein family HMM PF00034 gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3152 AFE_3153 AFE_3153 cyc2 cyc2 2834678 2836135 - cytochrome c identified by similarity to GB:CAA07031.1 gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3153 AFE_3154 AFE_3154 AFE_3154 2836820 2837512 + ISAfe4%2C transposase orf3%2C degenerate identified by match to protein family HMM PF03050 gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3154 AFE_3155 AFE_3155 AFE_3155 2837552 2838664 - hypothetical protein identified by glimmer%3B putative gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3155 AFE_3156 AFE_3156 AFE_3156 2839069 2839290 + hypothetical protein identified by glimmer%3B putative gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3156 AFE_3157 AFE_3157 AFE_3157 2839388 2839681 - ISAfe6%2C transposase%2C degenerate identified by similarity to GB:AAK61303.1 gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3157 AFE_3158 AFE_3158 htpG htpG 2839779 2841668 - heat shock protein HtpG identified by similarity to SP:P10413%3B match to protein family HMM PF00183%3B match to protein family HMM PF02518 gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3158 AFE_3159 AFE_3159 AFE_3159 2841856 2842176 - conserved hypothetical protein identified by similarity to PIR:S76457 gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3159 AFE_3160 AFE_3160 AFE_3160 2841714 2841863 + hypothetical protein identified by glimmer%3B putative gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3160 AFE_3161 AFE_3161 AFE_3161 2842362 2843357 - D-isomer specific 2-hydroxyacid dehydrogenase family protein identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3161 AFE_3162 AFE_3162 AFE_3162 2844062 2844547 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3162 AFE_3163 AFE_3163 AFE_3163 2844650 2844970 - isochorismate pyruvate lyase%2C putative identified by similarity to SP:Q51507%3B match to protein family HMM PF01817 gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3163 AFE_3164 AFE_3164 AFE_3164 2845001 2845648 - ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3164 AFE_3165 AFE_3165 AFE_3165 2845659 2846879 - membrane protein%2C putative gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3165 AFE_3166 AFE_3166 AFE_3166 2847007 2847468 - acetyltransferase%2C GNAT family identified by match to protein family HMM PF00583 gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3166 AFE_3167 AFE_3167 AFE_3167 2847555 2848213 - transcriptional regulator%2C putative%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by similarity to GB:BAB47691.1 pseudogene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3167 AFE_3168 AFE_3168 AFE_3168 2848227 2848874 - conserved hypothetical protein identified by similarity to PIR:B83761 gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3168 AFE_3169 AFE_3169 AFE_3169 2848885 2849370 - conserved hypothetical protein identified by similarity to GB:CAD16379.1%3B match to protein family HMM PF07883 gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3169 AFE_3170 AFE_3170 AFE_3170 2849372 2849839 - conserved hypothetical protein identified by similarity to GB:AAQ59281.1 gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3170 AFE_3171 AFE_3171 AFE_3171 2849901 2850267 - reductase%2C putative%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:P16543 pseudogene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3171 AFE_3172 AFE_3172 AFE_3172 2850264 2850662 - glyoxalase family protein identified by match to protein family HMM PF00903 gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3172 AFE_3173 AFE_3173 AFE_3173 2850902 2851327 - hypothetical protein identified by glimmer%3B putative gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3173 AFE_3174 AFE_3174 AFE_3174 2851317 2851820 - prevent-host-death family protein gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3174 AFE_3175 AFE_3175 AFE_3175 2853012 2853968 + hypothetical protein identified by glimmer%3B putative gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3175 AFE_3176 AFE_3176 AFE_3176 2853973 2854800 - ISAfe9%2C transposition helper protein identified by match to protein family HMM PF01695 gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3176 AFE_3177 AFE_3177 AFE_3177 2854797 2856281 - ISAfe9%2C transposase identified by match to protein family HMM PF00665 gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3177 AFE_3178 AFE_3178 AFE_3178 2856479 2856748 + hypothetical protein identified by glimmer%3B putative gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3178 AFE_3179 AFE_3179 AFE_3179 2856718 2856891 + hypothetical protein identified by glimmer%3B putative gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3179 AFE_3180 AFE_3180 AFE_3180 2856858 2857016 + hypothetical protein identified by glimmer%3B putative gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3180 AFE_3181 AFE_3181 AFE_3181 2857109 2857366 + In addition to frameshifts%2C this gene is disrupted by an IS element which is itself disrupted by an IS element%3B transposase%2C interruption-N%3B this region contains one or more premature stops and/or frameshifts pseudogene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3181 AFE_3182 AFE_3182 AFE_3182 2857592 2858089 + This gene is disrupted by an IS element%3B transposase%2C interruption-N%3B this region contains one or more premature stops and/or frameshifts pseudogene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3182 AFE_3183 AFE_3183 AFE_3183 2858272 2859300 - ISAfe1%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3183 AFE_3184 AFE_3184 AFE_3184 2859313 2859867 + This gene is disrupted by an IS element%3B transposase%2C interruption-C%3B this region contains one or more premature stops and/or frameshifts%3B identified by match to protein family HMM PF01609 pseudogene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3184 AFE_3185 AFE_3185 AFE_3185 2860018 2860744 + In addition to frameshifts%2C this gene is disrupted by an IS element which is itself disrupted by an IS element%3B transposase%2C interruption-C%3B this region contains one or more premature stops and/or frameshifts%3B identified by match to protein family HMM PF01609 pseudogene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3185 AFE_3186 AFE_3186 mrr mrr 2861419 2862336 - Mrr restriction system protein identified by similarity to SP:P24202%3B match to protein family HMM PF04471 gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3186 AFE_3187 AFE_3187 AFE_3187 2862792 2863064 + transposase. degenerate gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3187 AFE_3188 AFE_3188 AFE_3188 2863235 2863513 + hypothetical protein identified by glimmer%3B putative gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3188 AFE_3189 AFE_3189 AFE_3189 2864024 2864887 - conserved domain protein identified by similarity to GB:CAD18424.1 gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3189 AFE_3190 AFE_3190 AFE_3190 2864900 2865031 - hypothetical protein identified by glimmer%3B putative gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3190 AFE_3191 AFE_3191 AFE_3191 2865496 2868222 + type III restriction-modification system%2C Res subunit identified by match to protein family HMM PF04851 gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3191 AFE_3192 AFE_3192 AFE_3192 2868225 2870480 + type III restriction-modification system%2C Mod subunit identified by match to protein family HMM PF01555 gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3192 AFE_3193 AFE_3193 AFE_3193 2870533 2873217 + PHP domain protein gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3193 AFE_3194 AFE_3194 AFE_3194 2873220 2874431 + ATP-dependent DNA helicase RecG domain protein identified by similarity to SP:O50224%3B match to protein family HMM PF04326 gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3194 AFE_3195 AFE_3195 AFE_3195 2874471 2876102 - Tn5468%2C orf5 identified by similarity to PIR:T45498 gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3195 AFE_3196 AFE_3196 tnsD-2 tnsD-2 2876122 2877951 - Tn5468%2C transposition protein D identified by similarity to PIR:T45497 gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3196 AFE_3197 AFE_3197 tnsC-2 tnsC-2 2877963 2879618 - Tn5468%2C transposition protein C identified by similarity to PIR:T45496 gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3197 AFE_3198 AFE_3198 tnsB-2 tnsB-2 2879602 2881767 - Tn5468%2C transposase protein B identified by similarity to PIR:T45495%3B match to protein family HMM PF00665 gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3198 AFE_3199 AFE_3199 tnsA-2 tnsA-2 2881764 2882600 - Tn5468%2C transposase protein A identified by similarity to PIR:T45494%3B match to protein family HMM PF08721%3B match to protein family HMM PF08722 gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3199 AFE_3200 AFE_3200 glmS glmS 2882774 2884609 - glucosamine--fructose-6-phosphate aminotransferase%2C isomerizing identified by match to protein family HMM PF00310%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR01135 gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3200 AFE_3201 AFE_3201 glmU glmU 2884655 2886022 - UDP-N-acetylglucosamine pyrophosphorylase identified by similarity to SP:P17114%3B match to protein family HMM PF00132%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR01173 gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3201 AFE_3202 AFE_3202 atpC atpC 2886151 2886576 - ATP synthase F1%2C epsilon subunit identified by match to protein family HMM PF00401%3B match to protein family HMM PF02823%3B match to protein family HMM TIGR01216 gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3202 AFE_3203 AFE_3203 atpD atpD 2886580 2887989 - ATP synthase F1%2C beta subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039 gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3203 AFE_3204 AFE_3204 atpG atpG 2888031 2888897 - ATP synthase F1%2C gamma subunit identified by match to protein family HMM PF00231%3B match to protein family HMM TIGR01146 gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3204 AFE_3205 AFE_3205 atpA atpA 2888907 2890451 - ATP synthase F1%2C alpha subunit identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR00962 gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3205 AFE_3206 AFE_3206 atpH atpH 2890468 2891007 - ATP synthase F1%2C delta subunit identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145 gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3206 AFE_3207 AFE_3207 atpF atpF 2891018 2891497 - ATP synthase F0%2C B subunit identified by match to protein family HMM PF00430%3B match to protein family HMM TIGR01144 gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3207 AFE_3208 AFE_3208 atpE atpE 2891540 2891794 - ATP synthase F0%2C C subunit identified by match to protein family HMM PF00137%3B match to protein family HMM TIGR01260 gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3208 AFE_3209 AFE_3209 atpB atpB 2891836 2892585 - ATP synthase F0%2C A subunit identified by match to protein family HMM PF00119%3B match to protein family HMM TIGR01131 gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3209 AFE_3210 AFE_3210 AFE_3210 2892588 2892959 - conserved hypothetical protein identified by similarity to PIR:F82716 gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3210 AFE_3211 AFE_3211 AFE_3211 2893014 2893898 - parB family protein identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180 gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3211 AFE_3212 AFE_3212 AFE_3212 2893895 2894677 - chromosome partitioning protein parA identified by similarity to SP:O05189%3B match to protein family HMM PF01656 gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3212 AFE_3213 AFE_3213 gidB gidB 2894724 2895389 - methyltransferase GidB identified by match to protein family HMM PF02527%3B match to protein family HMM TIGR00138 gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3213 AFE_3214 AFE_3214 gidA gidA 2895394 2897268 - glucose-inhibited division protein A identified by match to protein family HMM PF01134%3B match to protein family HMM TIGR00136 gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3214 AFE_3215 AFE_3215 AFE_3215 2897287 2897736 - lipoprotein%2C putative gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3215 AFE_3216 AFE_3216 AFE_3216 2897724 2898263 - conserved hypothetical protein identified by similarity to GB:AAN54046.1%3B match to protein family HMM PF08241%3B match to protein family HMM PF08242 gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3216 AFE_3217 AFE_3217 moaB moaB 2898273 2898815 - molybdenum cofactor biosynthesis protein B identified by similarity to SP:P30746%3B match to protein family HMM PF00994%3B match to protein family HMM TIGR00177%3B match to protein family HMM TIGR02667 gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3217 AFE_3218 AFE_3218 AFE_3218 2898964 2899899 + magnesium and cobalt transport protein%2C putative identified by match to protein family HMM PF01544 gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3218 AFE_3219 AFE_3219 AFE_3219 2899930 2900871 + magnesium and cobalt transport protein%2C putative identified by match to protein family HMM PF01544 gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3219 AFE_3220 AFE_3220 AFE_3220 2900879 2901778 + hypothetical protein identified by glimmer%3B putative gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3220 AFE_3221 AFE_3221 AFE_3221 2901797 2902708 + magnesium and cobalt transport protein%2C putative identified by match to protein family HMM PF01544 gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3221 AFE_3222 AFE_3222 AFE_3222 2902789 2903859 - ADP-ribosylglycohydrolase family protein identified by match to protein family HMM PF03747 gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3222 AFE_3223 AFE_3223 AFE_3223 2904250 2904702 + WrbA family protein identified by similarity to SP:P30849 gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3223 AFE_3224 AFE_3224 AFE_3224 2904706 2905578 + pirin family protein identified by similarity to SP:O00625%3B match to protein family HMM PF02678%3B match to protein family HMM PF05726 gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3224 AFE_3225 AFE_3225 AFE_3225 2905627 2905788 + hypothetical protein identified by glimmer%3B putative gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3225 AFE_3226 AFE_3226 AFE_3226 2906447 2906838 - trag protein%2C putative%2C degenerate%3B this region contains one or more premature stops and/or frameshifts%3B identified by similarity to SP:Q00184 pseudogene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3226 AFE_3227 AFE_3227 AFE_3227 2905800 2906462 + hypothetical protein identified by glimmer%3B putative gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3227 AFE_3228 AFE_3228 AFE_3228 2906887 2907066 - hypothetical protein identified by glimmer%3B putative gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3228 AFE_3229 AFE_3229 AFE_3229 2907212 2909518 + TonB-dependent receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3229 AFE_3230 AFE_3230 AFE_3230 2909604 2912399 + hypothetical protein identified by glimmer%3B putative gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3230 AFE_3231 AFE_3231 AFE_3231 2912546 2912761 - site-specific recombinase%2C phage integrase family%2C truncation%3B comparison of this gene to its homologs suggests this gene has been truncated%3B identified by similarity to GB:BAC46135.1 pseudogene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3231 AFE_3232 AFE_3232 AFE_3232 2912850 2912948 + hypothetical protein identified by glimmer%3B putative gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3232 AFE_3233 AFE_3233 AFE_3233 2912963 2913039 - tRNA-Met tRNA gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3233 AFE_3234 AFE_3234 AFE_3234 2913326 2913916 - hypothetical protein identified by glimmer%3B putative gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3234 AFE_3235 AFE_3235 AFE_3235 2914011 2914787 - ABC-2 type transporter%2C permease protein%2C NodJ family identified by match to protein family HMM PF01061%3B match to protein family HMM TIGR01291 gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3235 AFE_3236 AFE_3236 AFE_3236 2914787 2915716 - ABC transporter%2C ATP-binding protein%2C NodI family identified by match to protein family HMM PF00005 gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3236 AFE_3237 AFE_3237 AFE_3237 2915697 2916365 - conserved hypothetical protein identified by similarity to GB:AAO91263.1 gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3237 AFE_3238 AFE_3238 AFE_3238 2916425 2916742 - ferredoxin%2C putative identified by similarity to SP:P07324 gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3238 AFE_3239 AFE_3239 AFE_3239 2916815 2917441 + Coq7 family protein gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3239 AFE_3240 AFE_3240 AFE_3240 2917446 2917973 - Rrf2 family protein identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3240 AFE_3241 AFE_3241 AFE_3241 2917945 2918370 - OsmC/Ohr family protein identified by match to protein family HMM PF02566 gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3241 AFE_3242 AFE_3242 trpC trpC 2918441 2919232 - indole-3-glycerol phosphate synthase identified by similarity to SP:P20577%3B match to protein family HMM PF00218 gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3242 AFE_3243 AFE_3243 trpD trpD 2919236 2920252 - anthranilate phosphoribosyltransferase identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM TIGR01245 gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3243 AFE_3244 AFE_3244 pabA pabA 2920249 2920821 - para-aminobenzoate synthase glutamine amidotransferase component II identified by similarity to PIR:A01122%3B match to protein family HMM PF00117%3B match to protein family HMM TIGR00566 gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3244 AFE_3245 AFE_3245 trpE trpE 2920805 2922322 - anthranilate synthase component I identified by similarity to PIR:A39128%3B match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00564 gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3245 AFE_3246 AFE_3246 gph-2 gph-2 2922433 2923116 - phosphoglycolate phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01449%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3246 AFE_3247 AFE_3247 rpe rpe 2923120 2923782 - ribulose-phosphate 3-epimerase identified by match to protein family HMM PF00834%3B match to protein family HMM TIGR01163 gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3247 AFE_3248 AFE_3248 fba fba 2923847 2924917 - fructose-bisphosphate aldolase%2C class II identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01521 gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3248 AFE_3249 AFE_3249 pykA pykA 2925025 2926464 - pyruvate kinase II identified by similarity to SP:P21599%3B match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064 gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3249 AFE_3250 AFE_3250 pgk pgk 2926461 2927666 - phosphoglycerate kinase identified by similarity to SP:P11665%3B match to protein family HMM PF00162 gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3250 AFE_3251 AFE_3251 gap gap 2927681 2928697 - glyceraldehyde-3-phosphate dehydrogenase%2C type I identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534 gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3251 AFE_3252 AFE_3252 tkt-2 tkt-2 2928732 2930723 - transketolase identified by match to protein family HMM PF00456%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00232 gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3252 AFE_3253 AFE_3253 glpX glpX 2930755 2931699 - fructose-1%2C6-bisphosphatase%2C class II identified by match to protein family HMM PF03320%3B match to protein family HMM TIGR00330 gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3253 AFE_3254 AFE_3254 AFE_3254 2931758 2932585 - inositol monophosphatase family protein identified by match to protein family HMM PF00459 gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3254 AFE_3255 AFE_3255 AFE_3255 2932609 2933046 - conserved hypothetical protein identified by similarity to GB:CAD85827.1 gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3255 AFE_3256 AFE_3256 AFE_3256 2932970 2933128 - hypothetical protein identified by glimmer%3B putative gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3256 AFE_3257 AFE_3257 AFE_3257 2933114 2933839 + conserved hypothetical protein TIGR00046 identified by similarity to GB:AAM42157.1%3B match to protein family HMM PF04452%3B match to protein family HMM TIGR00046 gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3257 AFE_3258 AFE_3258 ispH ispH 2933928 2934878 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase identified by match to protein family HMM PF02401%3B match to protein family HMM TIGR00216 gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3258 AFE_3259 AFE_3259 AFE_3259 2934917 2936377 - DNA recombination protein RmuC%2C putative identified by similarity to SP:P27850%3B match to protein family HMM PF02646 gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3259 AFE_3260 AFE_3260 mscL mscL 2936484 2936939 - large conductance mechanosensitive channel protein identified by match to protein family HMM PF01741%3B match to protein family HMM TIGR00220 gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3260 AFE_3261 AFE_3261 AFE_3261 2937050 2937562 - lipoprotein%2C putative gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3261 AFE_3262 AFE_3262 AFE_3262 2937596 2940706 - transporter%2C AcrB/AcrD/AcrF family identified by match to protein family HMM PF00873 gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3262 AFE_3263 AFE_3263 AFE_3263 2941025 2942251 + ISAfe3%2C transposase identified by match to protein family HMM PF01548%3B match to protein family HMM PF02371 gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3263 AFE_3264 AFE_3264 AFE_3264 2942256 2943389 - efflux transporter%2C RND family%2C MFP subunit identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3264 AFE_3265 AFE_3265 AFE_3265 2943386 2944816 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3265 AFE_3266 AFE_3266 AFE_3266 2945212 2945352 - conserved domain protein gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3266 AFE_3267 AFE_3267 AFE_3267 2945466 2945909 - YaiI/YqxD family protein identified by match to protein family HMM PF02639 gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3267 AFE_3268 AFE_3268 AFE_3268 2946113 2946406 + prevent-host-death family protein identified by match to protein family HMM TIGR01552 gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3268 AFE_3269 AFE_3269 AFE_3269 2946422 2946844 + conserved hypothetical protein TIGR00305 identified by similarity to GB:CAD85533.1%3B match to protein family HMM TIGR00305 gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3269 AFE_3270 AFE_3270 AFE_3270 2947117 2948676 + conserved domain protein gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3270 AFE_3271 AFE_3271 AFE_3271 2949653 2949847 - hypothetical protein identified by glimmer%3B putative gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3271 AFE_3272 AFE_3272 AFE_3272 2950598 2950876 - hypothetical protein identified by glimmer%3B putative gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3272 AFE_3273 AFE_3273 AFE_3273 2950860 2951315 + hypothetical protein identified by glimmer%3B putative gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3273 AFE_3274 AFE_3274 AFE_3274 2951316 2952053 + transcriptional regulator OmpR%2C putative identified by similarity to SP:P03025%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3274 AFE_3275 AFE_3275 AFE_3275 2952059 2953321 + osmolarity sensor protein EnvZ%2C putative identified by similarity to SP:P02933%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3275 AFE_3276 AFE_3276 AFE_3276 2953333 2953659 - hypothetical protein identified by glimmer%3B putative gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3276 AFE_3277 AFE_3277 argH argH 2953803 2955191 + argininosuccinate lyase identified by similarity to SP:O34858%3B match to protein family HMM PF00206%3B match to protein family HMM TIGR00838 gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3277 AFE_3278 AFE_3278 AFE_3278 2955188 2955373 + lipoprotein%2C putative gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3278 AFE_3279 AFE_3279 lysA lysA 2955370 2956629 + diaminopimelate decarboxylase identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01048 gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3279 AFE_3280 AFE_3280 AFE_3280 2956771 2957322 + conserved hypothetical protein identified by similarity to GB:AAN68689.1 gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3280 AFE_3281 AFE_3281 hynD hynD 2957354 2957830 + hydrogenase maturation protease identified by match to protein family HMM PF01750%3B match to protein family HMM TIGR00072 gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3281 AFE_3282 AFE_3282 hynH hynH 2957823 2958233 + hydrogenase expression protein%2C putative gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3282 AFE_3283 AFE_3283 hynS hynS 2958233 2959333 + [Ni/Fe] hydrogenase%2C small subunit identified by match to protein family HMM PF01058%3B match to protein family HMM PF08425%3B match to protein family HMM TIGR00391%3B match to protein family HMM TIGR01409 gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3283 AFE_3284 AFE_3284 isp1 isp1 2959323 2959988 + membrane protein%2C putative gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3284 AFE_3285 AFE_3285 isp2 isp2 2959985 2961346 + iron-sulfur cluster-binding protein identified by match to protein family HMM PF00037%3B match to protein family HMM PF02754 gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3285 AFE_3286 AFE_3286 hynL hynL 2961350 2963107 + [Ni/Fe] hydrogenase%2C large subunit identified by similarity to GB:AAC38282.1%3B match to protein family HMM PF00374 gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3286 AFE_3287 AFE_3287 hypA-2 hypA-2 2963176 2963517 + hydrogenase nickel insertion protein HypA identified by similarity to SP:P24189%3B match to protein family HMM PF01155%3B match to protein family HMM TIGR00100 gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3287 AFE_3288 AFE_3288 hypB-2 hypB-2 2963517 2964317 + hydrogenase accessory protein HypB identified by similarity to SP:Q43949%3B match to protein family HMM PF02492%3B match to protein family HMM TIGR00073 gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3288 AFE_3289 AFE_3289 hypC-2 hypC-2 2964332 2964577 + hydrogenase assembly chaperone HypC identified by similarity to SP:P31881%3B match to protein family HMM PF01455%3B match to protein family HMM TIGR00074 gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3289 AFE_3290 AFE_3290 hypD-2 hypD-2 2964574 2965686 + hydrogenase expression/formation protein HypD identified by similarity to SP:P24192%3B match to protein family HMM PF01924%3B match to protein family HMM TIGR00075 gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3290 AFE_3291 AFE_3291 AFE_3291 2965876 2966760 + NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3291 AFE_3292 AFE_3292 gmd-2 gmd-2 2966757 2967788 + GDP-mannose 4%2C6-dehydratase identified by similarity to SP:Q51366%3B match to protein family HMM PF01370%3B match to protein family HMM TIGR01472 gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3292 AFE_3293 AFE_3293 AFE_3293 2967785 2969224 + mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase identified by similarity to SP:P29956%3B match to protein family HMM PF00483%3B match to protein family HMM PF01050%3B match to protein family HMM PF07883%3B match to protein family HMM TIGR01479 gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3293 AFE_3294 AFE_3294 rfbC rfbC 2969256 2969804 - dTDP-4-dehydrorhamnose 3%2C5-epimerase identified by similarity to SP:P37780%3B match to protein family HMM PF00908%3B match to protein family HMM TIGR01221 gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3294 AFE_3295 AFE_3295 rfbA rfbA 2969801 2970685 - glucose-1-phosphate thymidylyltransferase identified by similarity to SP:P55254%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR01207 gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3295 AFE_3296 AFE_3296 AFE_3296 2970883 2972259 + major facilitator family transporter identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3296 AFE_3297 AFE_3297 AFE_3297 2972273 2972965 - TonB family protein identified by match to protein family HMM TIGR01352 gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3297 AFE_3298 AFE_3298 hemB hemB 2972934 2973926 - delta-aminolevulinic acid dehydratase identified by match to protein family HMM PF00490 gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3298 AFE_3299 AFE_3299 hemD hemD 2973994 2974782 - uroporphyrinogen-III synthase identified by similarity to SP:P42452%3B match to protein family HMM PF02602 gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3299 AFE_3300 AFE_3300 hemC hemC 2974779 2975699 - porphobilinogen deaminase identified by match to protein family HMM PF01379%3B match to protein family HMM PF03900%3B match to protein family HMM TIGR00212 gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3300 AFE_3301 AFE_3301 AFE_3301 2975745 2976020 - competence protein ComEA helix-hairpin-helix repeat protein identified by match to protein family HMM PF00633 gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3301 AFE_3302 AFE_3302 AFE_3302 2976115 2976510 - HIT family protein identified by match to protein family HMM PF01230 gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3302 AFE_3303 AFE_3303 hemL hemL 2976507 2977799 - glutamate-1-semialdehyde-2%2C1-aminomutase identified by similarity to SP:P48247%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00713 gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3303 AFE_3304 AFE_3304 thiE thiE 2977802 2978455 - thiamine-phosphate pyrophosphorylase identified by similarity to SP:P39594%3B match to protein family HMM PF02581%3B match to protein family HMM TIGR00693 gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3304 AFE_3305 AFE_3305 AFE_3305 2978442 2979275 - phosphomethylpyrimidine kinase%2C putative identified by match to protein family HMM PF08543 gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3305 AFE_3306 AFE_3306 AFE_3306 2979330 2979452 - hypothetical protein identified by glimmer%3B putative gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3306 AFE_3307 AFE_3307 AFE_3307 2979571 2980356 - oxidoreductase%2C short-chain dehydrogenase/reductase family identified by similarity to GB:CAE31946.1%3B match to protein family HMM PF00106%3B match to protein family HMM PF08659 gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3307 AFE_3308 AFE_3308 AFE_3308 2980590 2980829 + hypothetical protein identified by glimmer%3B putative gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3308 AFE_3309 AFE_3309 dnaA dnaA 2980841 2982199 + chromosomal replication initiator protein DnaA identified by match to protein family HMM PF00308%3B match to protein family HMM PF08299%3B match to protein family HMM TIGR00362 gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=AFE_3309