locus-tag class description Lferr_0001 PF08299 Bacterial dnaA protein helix-turn-helix Lferr_0001 PF00308 Bacterial dnaA protein Lferr_0001 PF11638 DnaA N-terminal domain Lferr_0002 PF02767 DNA polymerase III beta subunit, central domain Lferr_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Lferr_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Lferr_0003 PF02463 RecF/RecN/SMC N terminal domain Lferr_0004 PF00986 DNA gyrase B subunit, carboxyl terminus Lferr_0004 PF00204 DNA gyrase B Lferr_0004 PF18053 DNA gyrase B subunit insert domain Lferr_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_0004 PF01751 Toprim domain Lferr_0005 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_0010 PF03776 Septum formation topological specificity factor MinE Lferr_0012 PF03776 Septum formation topological specificity factor MinE Lferr_0013 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Lferr_0014 PF05209 Septum formation inhibitor MinC, N-terminal domain Lferr_0014 PF03775 Septum formation inhibitor MinC, C-terminal domain Lferr_0015 PF00037 4Fe-4S binding domain Lferr_0015 PF11953 Domain of unknown function (DUF3470) Lferr_0016 PF13368 Topoisomerase C-terminal repeat Lferr_0016 PF01751 Toprim domain Lferr_0016 PF01131 DNA topoisomerase Lferr_0017 PF04361 Protein of unknown function (DUF494) Lferr_0018 PF02481 DNA recombination-mediator protein A Lferr_0018 PF17782 DprA winged helix domain Lferr_0020 PF01327 Polypeptide deformylase Lferr_0021 PF00551 Formyl transferase Lferr_0021 PF02911 Formyl transferase, C-terminal domain Lferr_0022 PF01189 16S rRNA methyltransferase RsmB/F Lferr_0022 PF01029 NusB family Lferr_0024 PF00672 HAMP domain Lferr_0024 PF00512 His Kinase A (phospho-acceptor) domain Lferr_0024 PF00989 PAS fold Lferr_0024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_0025 PF00158 Sigma-54 interaction domain Lferr_0025 PF00072 Response regulator receiver domain Lferr_0025 PF02954 Bacterial regulatory protein, Fis family Lferr_0028 PF00512 His Kinase A (phospho-acceptor) domain Lferr_0028 PF00989 PAS fold Lferr_0028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_0029 PF00158 Sigma-54 interaction domain Lferr_0029 PF00072 Response regulator receiver domain Lferr_0029 PF02954 Bacterial regulatory protein, Fis family Lferr_0030 PF13360 PQQ-like domain Lferr_0030 PF01011 PQQ enzyme repeat Lferr_0030 PF13570 PQQ-like domain Lferr_0032 PF12631 MnmE helical domain Lferr_0032 PF01926 50S ribosome-binding GTPase Lferr_0032 PF10396 GTP-binding protein TrmE N-terminus Lferr_0033 PF02096 60Kd inner membrane protein Lferr_0033 PF14849 YidC periplasmic domain Lferr_0034 PF01809 Putative membrane protein insertion efficiency factor Lferr_0035 PF00825 Ribonuclease P Lferr_0036 PF00468 Ribosomal protein L34 Lferr_0037 PF12848 ABC transporter Lferr_0037 PF00005 ABC transporter Lferr_0038 PF03466 LysR substrate binding domain Lferr_0038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_0039 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Lferr_0039 PF00529 HlyD membrane-fusion protein of T1SS Lferr_0041 PF07690 Major Facilitator Superfamily Lferr_0055 PF01914 MarC family integral membrane protein Lferr_0057 PF02938 GAD domain Lferr_0057 PF00152 tRNA synthetases class II (D, K and N) Lferr_0057 PF01336 OB-fold nucleic acid binding domain Lferr_0058 PF02445 Quinolinate synthetase A protein Lferr_0060 PF01709 Transcriptional regulator Lferr_0061 PF02075 Crossover junction endodeoxyribonuclease RuvC Lferr_0062 PF01330 RuvA N terminal domain Lferr_0062 PF07499 RuvA, C-terminal domain Lferr_0063 PF17864 RuvB AAA lid domain Lferr_0063 PF05491 RuvB C-terminal winged helix domain Lferr_0063 PF05496 Holliday junction DNA helicase RuvB P-loop domain Lferr_0064 PF03061 Thioesterase superfamily Lferr_0065 PF01618 MotA/TolQ/ExbB proton channel family Lferr_0066 PF02472 Biopolymer transport protein ExbD/TolR Lferr_0068 PF04052 TolB amino-terminal domain Lferr_0068 PF07676 WD40-like Beta Propeller Repeat Lferr_0069 PF06508 Queuosine biosynthesis protein QueC Lferr_0070 PF04055 Radical SAM superfamily Lferr_0072 PF00691 OmpA family Lferr_0075 PF02397 Bacterial sugar transferase Lferr_0079 PF14667 Polysaccharide biosynthesis C-terminal domain Lferr_0079 PF01943 Polysaccharide biosynthesis protein Lferr_0080 PF01209 ubiE/COQ5 methyltransferase family Lferr_0082 PF00534 Glycosyl transferases group 1 Lferr_0084 PF13439 Glycosyltransferase Family 4 Lferr_0084 PF00534 Glycosyl transferases group 1 Lferr_0085 PF00535 Glycosyl transferase family 2 Lferr_0086 PF13439 Glycosyltransferase Family 4 Lferr_0086 PF00534 Glycosyl transferases group 1 Lferr_0094 PF02661 Fic/DOC family Lferr_0094 PF13784 Fic/DOC family N-terminal Lferr_0100 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_0103 PF00005 ABC transporter Lferr_0106 PF01566 Natural resistance-associated macrophage protein Lferr_0107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_0107 PF00672 HAMP domain Lferr_0107 PF00512 His Kinase A (phospho-acceptor) domain Lferr_0108 PF00486 Transcriptional regulatory protein, C terminal Lferr_0108 PF00072 Response regulator receiver domain Lferr_0110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Lferr_0111 PF00873 AcrB/AcrD/AcrF family Lferr_0114 PF07859 alpha/beta hydrolase fold Lferr_0122 PF04305 Protein of unknown function (DUF455) Lferr_0123 PF00814 Glycoprotease family Lferr_0125 PF02660 Glycerol-3-phosphate acyltransferase Lferr_0126 PF02152 Dihydroneopterin aldolase Lferr_0127 PF04055 Radical SAM superfamily Lferr_0127 PF18693 TRAM domain Lferr_0127 PF00919 Uncharacterized protein family UPF0004 Lferr_0137 PF01695 IstB-like ATP binding protein Lferr_0140 PF00436 Single-strand binding protein family Lferr_0143 PF15978 Tn7-like transposition protein D Lferr_0143 PF06527 TniQ Lferr_0144 PF11426 Tn7 transposition regulator TnsC Lferr_0144 PF13401 AAA domain Lferr_0155 PF02308 MgtC family Lferr_0159 PF09278 MerR, DNA binding Lferr_0159 PF00376 MerR family regulatory protein Lferr_0160 PF03203 MerC mercury resistance protein Lferr_0161 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lferr_0161 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_0161 PF00403 Heavy-metal-associated domain Lferr_0162 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lferr_0162 PF00403 Heavy-metal-associated domain Lferr_0162 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_0163 PF03203 MerC mercury resistance protein Lferr_0164 PF09278 MerR, DNA binding Lferr_0164 PF00376 MerR family regulatory protein Lferr_0165 PF08240 Alcohol dehydrogenase GroES-like domain Lferr_0172 PF00873 AcrB/AcrD/AcrF family Lferr_0180 PF00665 Integrase core domain Lferr_0181 PF00665 Integrase core domain Lferr_0181 PF13333 Integrase core domain Lferr_0181 PF13276 HTH-like domain Lferr_0181 PF01527 Transposase Lferr_0183 PF00873 AcrB/AcrD/AcrF family Lferr_0186 PF00403 Heavy-metal-associated domain Lferr_0188 PF00266 Aminotransferase class-V Lferr_0189 PF08241 Methyltransferase domain Lferr_0193 PF01209 ubiE/COQ5 methyltransferase family Lferr_0196 PF01609 Transposase DDE domain Lferr_0196 PF13006 Insertion element 4 transposase N-terminal Lferr_0204 PF12704 MacB-like periplasmic core domain Lferr_0204 PF02687 FtsX-like permease family Lferr_0204 PF00005 ABC transporter Lferr_0205 PF00005 ABC transporter Lferr_0206 PF00578 AhpC/TSA family Lferr_0207 PF02683 Cytochrome C biogenesis protein transmembrane region Lferr_0207 PF11412 Disulphide bond corrector protein DsbC Lferr_0208 PF01022 Bacterial regulatory protein, arsR family Lferr_0215 PF00665 Integrase core domain Lferr_0220 PF01695 IstB-like ATP binding protein Lferr_0221 PF00665 Integrase core domain Lferr_0222 PF08721 TnsA endonuclease C terminal Lferr_0222 PF08722 TnsA endonuclease N terminal Lferr_0226 PF04851 Type III restriction enzyme, res subunit Lferr_0226 PF00271 Helicase conserved C-terminal domain Lferr_0226 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Lferr_0226 PF08463 EcoEI R protein C-terminal Lferr_0228 PF12161 HsdM N-terminal domain Lferr_0228 PF02384 N-6 DNA Methylase Lferr_0229 PF01850 PIN domain Lferr_0230 PF09957 Bacterial antitoxin of type II TA system, VapB Lferr_0232 PF00501 AMP-binding enzyme Lferr_0232 PF01553 Acyltransferase Lferr_0234 PF12728 Helix-turn-helix domain Lferr_0235 PF13362 Toprim domain Lferr_0235 PF18818 Metallopeptidase superfamily domain Lferr_0235 PF08401 Domain of unknown function (DUF1738) Lferr_0244 PF00437 Type II/IV secretion system protein Lferr_0247 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Lferr_0253 PF02594 Uncharacterised ACR, YggU family COG1872 Lferr_0256 PF04335 VirB8 protein Lferr_0261 PF01464 Transglycosylase SLT domain Lferr_0262 PF02534 Type IV secretory system Conjugative DNA transfer Lferr_0266 PF03050 Transposase IS66 family Lferr_0266 PF13817 IS66 C-terminal element Lferr_0266 PF13007 Transposase C of IS166 homeodomain Lferr_0266 PF13005 zinc-finger binding domain of transposase IS66 Lferr_0272 PF17762 HTH domain found in ParB protein Lferr_0272 PF02195 ParB-like nuclease domain Lferr_0273 PF13614 AAA domain Lferr_0282 PF01381 Helix-turn-helix Lferr_0283 PF01751 Toprim domain Lferr_0283 PF01131 DNA topoisomerase Lferr_0305 PF06969 HemN C-terminal domain Lferr_0305 PF04055 Radical SAM superfamily Lferr_0306 PF03466 LysR substrate binding domain Lferr_0306 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_0311 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Lferr_0313 PF02913 FAD linked oxidases, C-terminal domain Lferr_0313 PF01565 FAD binding domain Lferr_0314 PF13580 SIS domain Lferr_0315 PF02021 Uncharacterised protein family UPF0102 Lferr_0316 PF04348 LppC putative lipoprotein Lferr_0317 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Lferr_0324 PF01471 Putative peptidoglycan binding domain Lferr_0324 PF13401 AAA domain Lferr_0327 PF00589 Phage integrase family Lferr_0327 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_0328 PF00589 Phage integrase family Lferr_0328 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_0331 PF04241 Protein of unknown function (DUF423) Lferr_0333 PF00230 Major intrinsic protein Lferr_0335 PF17284 Spermidine synthase tetramerisation domain Lferr_0336 PF02675 S-adenosylmethionine decarboxylase Lferr_0337 PF00005 ABC transporter Lferr_0338 PF02405 Permease MlaE Lferr_0339 PF02470 MlaD protein Lferr_0342 PF00005 ABC transporter Lferr_0343 PF01479 S4 domain Lferr_0344 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Lferr_0346 PF00398 Ribosomal RNA adenine dimethylase Lferr_0349 PF05746 DALR anticodon binding domain Lferr_0349 PF00750 tRNA synthetases class I (R) Lferr_0349 PF03485 Arginyl tRNA synthetase N terminal domain Lferr_0350 PF07690 Major Facilitator Superfamily Lferr_0351 PF03466 LysR substrate binding domain Lferr_0351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_0352 PF05175 Methyltransferase small domain Lferr_0353 PF03372 Endonuclease/Exonuclease/phosphatase family Lferr_0355 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Lferr_0356 PF00043 Glutathione S-transferase, C-terminal domain Lferr_0356 PF13417 Glutathione S-transferase, N-terminal domain Lferr_0357 PF03372 Endonuclease/Exonuclease/phosphatase family Lferr_0358 PF00762 Ferrochelatase Lferr_0359 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Lferr_0360 PF03702 Anhydro-N-acetylmuramic acid kinase Lferr_0361 PF01488 Shikimate / quinate 5-dehydrogenase Lferr_0361 PF08501 Shikimate dehydrogenase substrate binding domain Lferr_0361 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Lferr_0362 PF00437 Type II/IV secretion system protein Lferr_0362 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Lferr_0363 PF00512 His Kinase A (phospho-acceptor) domain Lferr_0363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_0364 PF00072 Response regulator receiver domain Lferr_0364 PF02954 Bacterial regulatory protein, Fis family Lferr_0364 PF00158 Sigma-54 interaction domain Lferr_0365 PF01478 Type IV leader peptidase family Lferr_0365 PF06750 Bacterial Peptidase A24 N-terminal domain Lferr_0366 PF01121 Dephospho-CoA kinase Lferr_0367 PF07072 Cell division protein Lferr_0368 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Lferr_0370 PF01551 Peptidase family M23 Lferr_0370 PF10145 Phage-related minor tail protein Lferr_0370 PF01464 Transglycosylase SLT domain Lferr_0371 PF02954 Bacterial regulatory protein, Fis family Lferr_0374 PF02785 Biotin carboxylase C-terminal domain Lferr_0374 PF00289 Biotin carboxylase, N-terminal domain Lferr_0374 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Lferr_0375 PF00364 Biotin-requiring enzyme Lferr_0376 PF01220 Dehydroquinase class II Lferr_0379 PF12327 FtsZ family, C-terminal domain Lferr_0379 PF00091 Tubulin/FtsZ family, GTPase domain Lferr_0380 PF02491 SHS2 domain inserted in FTSA Lferr_0381 PF08478 POTRA domain, FtsQ-type Lferr_0381 PF03799 Cell division protein FtsQ Lferr_0382 PF01820 D-ala D-ala ligase N-terminus Lferr_0382 PF07478 D-ala D-ala ligase C-terminus Lferr_0383 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Lferr_0383 PF01565 FAD binding domain Lferr_0384 PF02875 Mur ligase family, glutamate ligase domain Lferr_0384 PF01225 Mur ligase family, catalytic domain Lferr_0384 PF08245 Mur ligase middle domain Lferr_0385 PF03033 Glycosyltransferase family 28 N-terminal domain Lferr_0385 PF04101 Glycosyltransferase family 28 C-terminal domain Lferr_0386 PF01098 Cell cycle protein Lferr_0387 PF02875 Mur ligase family, glutamate ligase domain Lferr_0387 PF08245 Mur ligase middle domain Lferr_0388 PF00953 Glycosyl transferase family 4 Lferr_0388 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Lferr_0389 PF08245 Mur ligase middle domain Lferr_0389 PF01225 Mur ligase family, catalytic domain Lferr_0389 PF02875 Mur ligase family, glutamate ligase domain Lferr_0390 PF08245 Mur ligase middle domain Lferr_0390 PF02875 Mur ligase family, glutamate ligase domain Lferr_0390 PF01225 Mur ligase family, catalytic domain Lferr_0391 PF03717 Penicillin-binding Protein dimerisation domain Lferr_0391 PF00905 Penicillin binding protein transpeptidase domain Lferr_0393 PF01795 MraW methylase family Lferr_0394 PF02381 MraZ protein, putative antitoxin-like Lferr_0396 PF12627 Probable RNA and SrmB- binding site of polymerase A Lferr_0396 PF01743 Poly A polymerase head domain Lferr_0396 PF01966 HD domain Lferr_0397 PF00501 AMP-binding enzyme Lferr_0398 PF00043 Glutathione S-transferase, C-terminal domain Lferr_0398 PF02798 Glutathione S-transferase, N-terminal domain Lferr_0399 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Lferr_0401 PF07517 SecA DEAD-like domain Lferr_0401 PF07516 SecA Wing and Scaffold domain Lferr_0401 PF02810 SEC-C motif Lferr_0401 PF01043 SecA preprotein cross-linking domain Lferr_0402 PF01960 ArgJ family Lferr_0403 PF00293 NUDIX domain Lferr_0404 PF00535 Glycosyl transferase family 2 Lferr_0406 PF13439 Glycosyltransferase Family 4 Lferr_0406 PF00534 Glycosyl transferases group 1 Lferr_0407 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Lferr_0410 PF00535 Glycosyl transferase family 2 Lferr_0411 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Lferr_0413 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Lferr_0414 PF03279 Bacterial lipid A biosynthesis acyltransferase Lferr_0415 PF00155 Aminotransferase class I and II Lferr_0416 PF12867 DinB superfamily Lferr_0416 PF03781 Sulfatase-modifying factor enzyme 1 Lferr_0417 PF00588 SpoU rRNA Methylase family Lferr_0418 PF00156 Phosphoribosyl transferase domain Lferr_0419 PF00155 Aminotransferase class I and II Lferr_0420 PF00561 alpha/beta hydrolase fold Lferr_0421 PF08241 Methyltransferase domain Lferr_0423 PF01435 Peptidase family M48 Lferr_0424 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Lferr_0425 PF04377 Arginine-tRNA-protein transferase, C terminus Lferr_0425 PF04376 Arginine-tRNA-protein transferase, N terminus Lferr_0426 PF03649 Uncharacterised protein family (UPF0014) Lferr_0427 PF00929 Exonuclease Lferr_0428 PF00970 Oxidoreductase FAD-binding domain Lferr_0428 PF00175 Oxidoreductase NAD-binding domain Lferr_0428 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_0432 PF00440 Bacterial regulatory proteins, tetR family Lferr_0433 PF00696 Amino acid kinase family Lferr_0434 PF00529 HlyD membrane-fusion protein of T1SS Lferr_0434 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Lferr_0436 PF06968 Biotin and Thiamin Synthesis associated domain Lferr_0436 PF04055 Radical SAM superfamily Lferr_0437 PF02594 Uncharacterised ACR, YggU family COG1872 Lferr_0438 PF02325 YGGT family Lferr_0439 PF14748 Pyrroline-5-carboxylate reductase dimerisation Lferr_0439 PF03807 NADP oxidoreductase coenzyme F420-dependent Lferr_0440 PF01168 Alanine racemase, N-terminal domain Lferr_0441 PF00437 Type II/IV secretion system protein Lferr_0442 PF00437 Type II/IV secretion system protein Lferr_0443 PF00535 Glycosyl transferase family 2 Lferr_0446 PF00753 Metallo-beta-lactamase superfamily Lferr_0447 PF13545 Crp-like helix-turn-helix domain Lferr_0447 PF00027 Cyclic nucleotide-binding domain Lferr_0448 PF02390 Putative methyltransferase Lferr_0449 PF00731 AIR carboxylase Lferr_0450 PF02222 ATP-grasp domain Lferr_0450 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Lferr_0453 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Lferr_0454 PF01668 SmpB protein Lferr_0455 PF13396 Phospholipase_D-nuclease N-terminal Lferr_0455 PF13091 PLD-like domain Lferr_0456 PF03364 Polyketide cyclase / dehydrase and lipid transport Lferr_0457 PF04355 SmpA / OmlA family Lferr_0458 PF01475 Ferric uptake regulator family Lferr_0459 PF01472 PUA domain Lferr_0459 PF00696 Amino acid kinase family Lferr_0460 PF01018 GTP1/OBG Lferr_0460 PF01926 50S ribosome-binding GTPase Lferr_0461 PF01016 Ribosomal L27 protein Lferr_0462 PF00829 Ribosomal prokaryotic L21 protein Lferr_0463 PF00916 Sulfate permease family Lferr_0463 PF01740 STAS domain Lferr_0464 PF00484 Carbonic anhydrase Lferr_0465 PF08267 Cobalamin-independent synthase, N-terminal domain Lferr_0465 PF01717 Cobalamin-independent synthase, Catalytic domain Lferr_0466 PF01209 ubiE/COQ5 methyltransferase family Lferr_0468 PF00561 alpha/beta hydrolase fold Lferr_0468 PF07021 Methionine biosynthesis protein MetW Lferr_0469 PF00561 alpha/beta hydrolase fold Lferr_0471 PF00464 Serine hydroxymethyltransferase Lferr_0472 PF03477 ATP cone domain Lferr_0473 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Lferr_0473 PF01872 RibD C-terminal domain Lferr_0474 PF00677 Lumazine binding domain Lferr_0475 PF00925 GTP cyclohydrolase II Lferr_0475 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Lferr_0476 PF00885 6,7-dimethyl-8-ribityllumazine synthase Lferr_0477 PF01029 NusB family Lferr_0481 PF03109 ABC1 family Lferr_0482 PF00691 OmpA family Lferr_0482 PF04972 BON domain Lferr_0483 PF00009 Elongation factor Tu GTP binding domain Lferr_0483 PF03144 Elongation factor Tu domain 2 Lferr_0483 PF03143 Elongation factor Tu C-terminal domain Lferr_0485 PF02357 Transcription termination factor nusG Lferr_0485 PF00467 KOW motif Lferr_0486 PF00298 Ribosomal protein L11, RNA binding domain Lferr_0486 PF03946 Ribosomal protein L11, N-terminal domain Lferr_0487 PF00687 Ribosomal protein L1p/L10e family Lferr_0488 PF00466 Ribosomal protein L10 Lferr_0489 PF16320 Ribosomal protein L7/L12 dimerisation domain Lferr_0489 PF00542 Ribosomal protein L7/L12 C-terminal domain Lferr_0490 PF04560 RNA polymerase Rpb2, domain 7 Lferr_0490 PF04563 RNA polymerase beta subunit Lferr_0490 PF10385 RNA polymerase beta subunit external 1 domain Lferr_0490 PF00562 RNA polymerase Rpb2, domain 6 Lferr_0490 PF04561 RNA polymerase Rpb2, domain 2 Lferr_0490 PF04565 RNA polymerase Rpb2, domain 3 Lferr_0491 PF04997 RNA polymerase Rpb1, domain 1 Lferr_0491 PF00623 RNA polymerase Rpb1, domain 2 Lferr_0491 PF04983 RNA polymerase Rpb1, domain 3 Lferr_0491 PF05000 RNA polymerase Rpb1, domain 4 Lferr_0491 PF04998 RNA polymerase Rpb1, domain 5 Lferr_0492 PF00164 Ribosomal protein S12/S23 Lferr_0493 PF00177 Ribosomal protein S7p/S5e Lferr_0494 PF00009 Elongation factor Tu GTP binding domain Lferr_0494 PF03144 Elongation factor Tu domain 2 Lferr_0494 PF03764 Elongation factor G, domain IV Lferr_0494 PF14492 Elongation Factor G, domain II Lferr_0494 PF00679 Elongation factor G C-terminus Lferr_0495 PF00009 Elongation factor Tu GTP binding domain Lferr_0495 PF03143 Elongation factor Tu C-terminal domain Lferr_0495 PF03144 Elongation factor Tu domain 2 Lferr_0496 PF00338 Ribosomal protein S10p/S20e Lferr_0497 PF00297 Ribosomal protein L3 Lferr_0498 PF00573 Ribosomal protein L4/L1 family Lferr_0499 PF00276 Ribosomal protein L23 Lferr_0500 PF03947 Ribosomal Proteins L2, C-terminal domain Lferr_0500 PF00181 Ribosomal Proteins L2, RNA binding domain Lferr_0501 PF00203 Ribosomal protein S19 Lferr_0502 PF00237 Ribosomal protein L22p/L17e Lferr_0503 PF07650 KH domain Lferr_0503 PF00189 Ribosomal protein S3, C-terminal domain Lferr_0504 PF00252 Ribosomal protein L16p/L10e Lferr_0505 PF00831 Ribosomal L29 protein Lferr_0506 PF00366 Ribosomal protein S17 Lferr_0507 PF00238 Ribosomal protein L14p/L23e Lferr_0508 PF00467 KOW motif Lferr_0508 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Lferr_0509 PF00673 ribosomal L5P family C-terminus Lferr_0509 PF00281 Ribosomal protein L5 Lferr_0510 PF00253 Ribosomal protein S14p/S29e Lferr_0511 PF00410 Ribosomal protein S8 Lferr_0512 PF00347 Ribosomal protein L6 Lferr_0513 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Lferr_0514 PF03719 Ribosomal protein S5, C-terminal domain Lferr_0514 PF00333 Ribosomal protein S5, N-terminal domain Lferr_0515 PF00327 Ribosomal protein L30p/L7e Lferr_0516 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Lferr_0517 PF00344 SecY translocase Lferr_0518 PF05191 Adenylate kinase, active site lid Lferr_0519 PF01176 Translation initiation factor 1A / IF-1 Lferr_0520 PF00444 Ribosomal protein L36 Lferr_0521 PF00416 Ribosomal protein S13/S18 Lferr_0522 PF00411 Ribosomal protein S11 Lferr_0523 PF01479 S4 domain Lferr_0523 PF00163 Ribosomal protein S4/S9 N-terminal domain Lferr_0524 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Lferr_0524 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Lferr_0524 PF01000 RNA polymerase Rpb3/RpoA insert domain Lferr_0525 PF01196 Ribosomal protein L17 Lferr_0526 PF00692 dUTPase Lferr_0527 PF04127 DNA / pantothenate metabolism flavoprotein Lferr_0527 PF02441 Flavoprotein Lferr_0528 PF04002 RadC-like JAB domain Lferr_0530 PF01569 PAP2 superfamily Lferr_0535 PF01048 Phosphorylase superfamily Lferr_0536 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lferr_0536 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_0537 PF00462 Glutaredoxin Lferr_0537 PF08534 Redoxin Lferr_0538 PF18429 Domain of unknown function (DUF5609) Lferr_0539 PF17757 UvrB interaction domain Lferr_0539 PF03461 TRCF domain Lferr_0539 PF00271 Helicase conserved C-terminal domain Lferr_0539 PF00270 DEAD/DEAH box helicase Lferr_0539 PF02559 CarD-like/TRCF domain Lferr_0540 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Lferr_0541 PF02542 YgbB family Lferr_0542 PF01142 tRNA pseudouridine synthase D (TruD) Lferr_0543 PF09278 MerR, DNA binding Lferr_0543 PF00376 MerR family regulatory protein Lferr_0545 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_0546 PF17854 FtsK alpha domain Lferr_0546 PF09397 Ftsk gamma domain Lferr_0546 PF01580 FtsK/SpoIIIE family Lferr_0546 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Lferr_0547 PF03548 Outer membrane lipoprotein carrier protein LolA Lferr_0549 PF12002 MgsA AAA+ ATPase C terminal Lferr_0549 PF00004 ATPase family associated with various cellular activities (AAA) Lferr_0549 PF16193 AAA C-terminal domain Lferr_0550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Lferr_0550 PF02403 Seryl-tRNA synthetase N-terminal domain Lferr_0552 PF03734 L,D-transpeptidase catalytic domain Lferr_0552 PF17969 L,D-transpeptidase C-terminal domain Lferr_0553 PF17384 RimP C-terminal SH3 domain Lferr_0553 PF02576 RimP N-terminal domain Lferr_0554 PF00575 S1 RNA binding domain Lferr_0554 PF13184 NusA-like KH domain Lferr_0554 PF08529 NusA N-terminal domain Lferr_0555 PF00009 Elongation factor Tu GTP binding domain Lferr_0555 PF04760 Translation initiation factor IF-2, N-terminal region Lferr_0555 PF08364 Bacterial translation initiation factor IF-2 associated region Lferr_0555 PF11987 Translation-initiation factor 2 Lferr_0556 PF02033 Ribosome-binding factor A Lferr_0557 PF01509 TruB family pseudouridylate synthase (N terminal domain) Lferr_0557 PF16198 tRNA pseudouridylate synthase B C-terminal domain Lferr_0557 PF09157 Pseudouridine synthase II TruB, C-terminal Lferr_0558 PF00312 Ribosomal protein S15 Lferr_0559 PF00575 S1 RNA binding domain Lferr_0559 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Lferr_0559 PF01138 3' exoribonuclease family, domain 1 Lferr_0559 PF03725 3' exoribonuclease family, domain 2 Lferr_0559 PF00013 KH domain Lferr_0560 PF05193 Peptidase M16 inactive domain Lferr_0560 PF00675 Insulinase (Peptidase family M16) Lferr_0561 PF16123 Hydroxyacylglutathione hydrolase C-terminus Lferr_0561 PF00753 Metallo-beta-lactamase superfamily Lferr_0562 PF01209 ubiE/COQ5 methyltransferase family Lferr_0563 PF00075 RNase H Lferr_0564 PF00929 Exonuclease Lferr_0566 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Lferr_0568 PF00764 Arginosuccinate synthase Lferr_0569 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Lferr_0569 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Lferr_0570 PF00202 Aminotransferase class-III Lferr_0571 PF13840 ACT domain Lferr_0571 PF00696 Amino acid kinase family Lferr_0571 PF01842 ACT domain Lferr_0575 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Lferr_0581 PF00923 Transaldolase/Fructose-6-phosphate aldolase Lferr_0583 PF01464 Transglycosylase SLT domain Lferr_0583 PF01476 LysM domain Lferr_0584 PF00749 tRNA synthetases class I (E and Q), catalytic domain Lferr_0585 PF00330 Aconitase family (aconitate hydratase) Lferr_0586 PF00180 Isocitrate/isopropylmalate dehydrogenase Lferr_0587 PF00549 CoA-ligase Lferr_0587 PF08442 ATP-grasp domain Lferr_0589 PF02629 CoA binding domain Lferr_0589 PF00549 CoA-ligase Lferr_0590 PF00795 Carbon-nitrogen hydrolase Lferr_0590 PF02540 NAD synthase Lferr_0591 PF00543 Nitrogen regulatory protein P-II Lferr_0592 PF13525 Outer membrane lipoprotein Lferr_0593 PF00849 RNA pseudouridylate synthase Lferr_0593 PF01479 S4 domain Lferr_0595 PF03079 ARD/ARD' family Lferr_0596 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Lferr_0596 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Lferr_0598 PF00596 Class II Aldolase and Adducin N-terminal domain Lferr_0600 PF01327 Polypeptide deformylase Lferr_0601 PF13520 Amino acid permease Lferr_0602 PF16363 GDP-mannose 4,6 dehydratase Lferr_0603 PF04321 RmlD substrate binding domain Lferr_0606 PF00483 Nucleotidyl transferase Lferr_0608 PF00072 Response regulator receiver domain Lferr_0608 PF00158 Sigma-54 interaction domain Lferr_0610 PF00512 His Kinase A (phospho-acceptor) domain Lferr_0610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_0611 PF02463 RecF/RecN/SMC N terminal domain Lferr_0612 PF01513 ATP-NAD kinase Lferr_0613 PF03309 Type III pantothenate kinase Lferr_0614 PF02237 Biotin protein ligase C terminal domain Lferr_0614 PF03099 Biotin/lipoate A/B protein ligase family Lferr_0614 PF08279 HTH domain Lferr_0615 PF00171 Aldehyde dehydrogenase family Lferr_0617 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Lferr_0617 PF06144 DNA polymerase III, delta subunit Lferr_0619 PF00133 tRNA synthetases class I (I, L, M and V) Lferr_0619 PF13603 Leucyl-tRNA synthetase, Domain 2 Lferr_0619 PF08264 Anticodon-binding domain of tRNA Lferr_0620 PF03358 NADPH-dependent FMN reductase Lferr_0621 PF04264 YceI-like domain Lferr_0622 PF01427 D-ala-D-ala dipeptidase Lferr_0623 PF06827 Zinc finger found in FPG and IleRS Lferr_0623 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Lferr_0623 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Lferr_0625 PF01545 Cation efflux family Lferr_0625 PF16916 Dimerisation domain of Zinc Transporter Lferr_0626 PF00120 Glutamine synthetase, catalytic domain Lferr_0626 PF03951 Glutamine synthetase, beta-Grasp domain Lferr_0628 PF01975 Survival protein SurE Lferr_0630 PF04545 Sigma-70, region 4 Lferr_0630 PF04539 Sigma-70 region 3 Lferr_0630 PF04542 Sigma-70 region 2 Lferr_0630 PF00140 Sigma-70 factor, region 1.2 Lferr_0631 PF04430 Protein of unknown function (DUF498/DUF598) Lferr_0632 PF00155 Aminotransferase class I and II Lferr_0633 PF01842 ACT domain Lferr_0633 PF03447 Homoserine dehydrogenase, NAD binding domain Lferr_0633 PF00742 Homoserine dehydrogenase Lferr_0634 PF00291 Pyridoxal-phosphate dependent enzyme Lferr_0636 PF17768 RecJ OB domain Lferr_0636 PF02272 DHHA1 domain Lferr_0636 PF01368 DHH family Lferr_0637 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Lferr_0638 PF01850 PIN domain Lferr_0640 PF01336 OB-fold nucleic acid binding domain Lferr_0640 PF00152 tRNA synthetases class II (D, K and N) Lferr_0641 PF12704 MacB-like periplasmic core domain Lferr_0641 PF02687 FtsX-like permease family Lferr_0642 PF00005 ABC transporter Lferr_0644 PF03772 Competence protein Lferr_0644 PF00753 Metallo-beta-lactamase superfamily Lferr_0645 PF01618 MotA/TolQ/ExbB proton channel family Lferr_0646 PF02472 Biopolymer transport protein ExbD/TolR Lferr_0649 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Lferr_0650 PF03966 Trm112p-like protein Lferr_0651 PF02348 Cytidylyltransferase Lferr_0652 PF00719 Inorganic pyrophosphatase Lferr_0656 PF00132 Bacterial transferase hexapeptide (six repeats) Lferr_0657 PF00248 Aldo/keto reductase family Lferr_0663 PF03992 Antibiotic biosynthesis monooxygenase Lferr_0667 PF00589 Phage integrase family Lferr_0667 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_0668 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_0668 PF00589 Phage integrase family Lferr_0671 PF13401 AAA domain Lferr_0671 PF01471 Putative peptidoglycan binding domain Lferr_0676 PF03167 Uracil DNA glycosylase superfamily Lferr_0677 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Lferr_0678 PF17871 AAA lid domain Lferr_0678 PF07724 AAA domain (Cdc48 subfamily) Lferr_0678 PF02861 Clp amino terminal domain, pathogenicity island component Lferr_0678 PF00004 ATPase family associated with various cellular activities (AAA) Lferr_0678 PF10431 C-terminal, D2-small domain, of ClpB protein Lferr_0679 PF02617 ATP-dependent Clp protease adaptor protein ClpS Lferr_0681 PF01965 DJ-1/PfpI family Lferr_0682 PF03572 Peptidase family S41 Lferr_0682 PF13180 PDZ domain Lferr_0684 PF01676 Metalloenzyme superfamily Lferr_0684 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Lferr_0685 PF00343 Carbohydrate phosphorylase Lferr_0687 PF00581 Rhodanese-like domain Lferr_0688 PF00294 pfkB family carbohydrate kinase Lferr_0690 PF02773 S-adenosylmethionine synthetase, C-terminal domain Lferr_0690 PF02772 S-adenosylmethionine synthetase, central domain Lferr_0690 PF00438 S-adenosylmethionine synthetase, N-terminal domain Lferr_0691 PF05221 S-adenosyl-L-homocysteine hydrolase Lferr_0691 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lferr_0692 PF02219 Methylenetetrahydrofolate reductase Lferr_0693 PF00485 Phosphoribulokinase / Uridine kinase family Lferr_0696 PF01747 ATP-sulfurylase Lferr_0696 PF14306 PUA-like domain Lferr_0697 PF00156 Phosphoribosyl transferase domain Lferr_0698 PF00118 TCP-1/cpn60 chaperonin family Lferr_0699 PF00166 Chaperonin 10 Kd subunit Lferr_0701 PF11412 Disulphide bond corrector protein DsbC Lferr_0701 PF02683 Cytochrome C biogenesis protein transmembrane region Lferr_0703 PF01063 Amino-transferase class IV Lferr_0704 PF03710 Glutamate-ammonia ligase adenylyltransferase Lferr_0704 PF08335 GlnD PII-uridylyltransferase Lferr_0706 PF00795 Carbon-nitrogen hydrolase Lferr_0707 PF06472 ABC transporter transmembrane region 2 Lferr_0707 PF00005 ABC transporter Lferr_0710 PF01252 Signal peptidase (SPase) II Lferr_0711 PF08264 Anticodon-binding domain of tRNA Lferr_0711 PF00133 tRNA synthetases class I (I, L, M and V) Lferr_0711 PF06827 Zinc finger found in FPG and IleRS Lferr_0712 PF01687 Riboflavin kinase Lferr_0712 PF06574 FAD synthetase Lferr_0714 PF03023 Lipid II flippase MurJ Lferr_0716 PF08340 Domain of unknown function (DUF1732) Lferr_0716 PF03755 YicC-like family, N-terminal region Lferr_0717 PF00625 Guanylate kinase Lferr_0718 PF01192 RNA polymerase Rpb6 Lferr_0719 PF02824 TGS domain Lferr_0719 PF04607 Region found in RelA / SpoT proteins Lferr_0719 PF13291 ACT domain Lferr_0720 PF01042 Endoribonuclease L-PSP Lferr_0722 PF00270 DEAD/DEAH box helicase Lferr_0722 PF17191 RecG wedge domain Lferr_0722 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Lferr_0725 PF01594 AI-2E family transporter Lferr_0726 PF01875 Memo-like protein Lferr_0727 PF01871 AMMECR1 Lferr_0728 PF04055 Radical SAM superfamily Lferr_0729 PF02321 Outer membrane efflux protein Lferr_0730 PF04715 Anthranilate synthase component I, N terminal region Lferr_0730 PF00425 chorismate binding enzyme Lferr_0741 PF03880 DbpA RNA binding domain Lferr_0741 PF00270 DEAD/DEAH box helicase Lferr_0741 PF00271 Helicase conserved C-terminal domain Lferr_0742 PF00313 'Cold-shock' DNA-binding domain Lferr_0743 PF17764 3′ DNA-binding domain (3′BD) Lferr_0743 PF00271 Helicase conserved C-terminal domain Lferr_0743 PF00270 DEAD/DEAH box helicase Lferr_0743 PF18074 Primosomal protein N C-terminal domain Lferr_0743 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Lferr_0746 PF00398 Ribosomal RNA adenine dimethylase Lferr_0748 PF04055 Radical SAM superfamily Lferr_0748 PF01938 TRAM domain Lferr_0748 PF00919 Uncharacterized protein family UPF0004 Lferr_0749 PF02562 PhoH-like protein Lferr_0750 PF02130 Uncharacterized protein family UPF0054 Lferr_0751 PF03471 Transporter associated domain Lferr_0751 PF00571 CBS domain Lferr_0752 PF00795 Carbon-nitrogen hydrolase Lferr_0753 PF01523 Putative modulator of DNA gyrase Lferr_0755 PF00005 ABC transporter Lferr_0757 PF00950 ABC 3 transport family Lferr_0760 PF01370 NAD dependent epimerase/dehydratase family Lferr_0766 PF00534 Glycosyl transferases group 1 Lferr_0766 PF13439 Glycosyltransferase Family 4 Lferr_0767 PF13439 Glycosyltransferase Family 4 Lferr_0767 PF00534 Glycosyl transferases group 1 Lferr_0768 PF00005 ABC transporter Lferr_0768 PF00664 ABC transporter transmembrane region Lferr_0769 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Lferr_0769 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lferr_0769 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Lferr_0771 PF00300 Histidine phosphatase superfamily (branch 1) Lferr_0771 PF13456 Reverse transcriptase-like Lferr_0774 PF08241 Methyltransferase domain Lferr_0775 PF00330 Aconitase family (aconitate hydratase) Lferr_0776 PF00694 Aconitase C-terminal domain Lferr_0778 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Lferr_0778 PF01243 Pyridoxamine 5'-phosphate oxidase Lferr_0779 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Lferr_0781 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Lferr_0781 PF06481 COX Aromatic Rich Motif Lferr_0782 PF00115 Cytochrome C and Quinol oxidase polypeptide I Lferr_0783 PF00510 Cytochrome c oxidase subunit III Lferr_0785 PF01040 UbiA prenyltransferase family Lferr_0786 PF07690 Major Facilitator Superfamily Lferr_0787 PF02673 Bacitracin resistance protein BacA Lferr_0788 PF03449 Transcription elongation factor, N-terminal Lferr_0788 PF01272 Transcription elongation factor, GreA/GreB, C-term Lferr_0789 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Lferr_0789 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Lferr_0789 PF02142 MGS-like domain Lferr_0790 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Lferr_0790 PF00117 Glutamine amidotransferase class-I Lferr_0792 PF05690 Thiazole biosynthesis protein ThiG Lferr_0792 PF02597 ThiS family Lferr_0793 PF05690 Thiazole biosynthesis protein ThiG Lferr_0795 PF08245 Mur ligase middle domain Lferr_0795 PF02875 Mur ligase family, glutamate ligase domain Lferr_0795 PF01225 Mur ligase family, catalytic domain Lferr_0796 PF02441 Flavoprotein Lferr_0797 PF00005 ABC transporter Lferr_0798 PF02405 Permease MlaE Lferr_0802 PF00899 ThiF family Lferr_0805 PF00005 ABC transporter Lferr_0806 PF00085 Thioredoxin Lferr_0807 PF07497 Rho termination factor, RNA-binding domain Lferr_0807 PF07498 Rho termination factor, N-terminal domain Lferr_0807 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Lferr_0808 PF01197 Ribosomal protein L31 Lferr_0809 PF03949 Malic enzyme, NAD binding domain Lferr_0809 PF00390 Malic enzyme, N-terminal domain Lferr_0810 PF01594 AI-2E family transporter Lferr_0811 PF00920 Dehydratase family Lferr_0813 PF00583 Acetyltransferase (GNAT) family Lferr_0813 PF00696 Amino acid kinase family Lferr_0814 PF01722 BolA-like protein Lferr_0815 PF03795 YCII-related domain Lferr_0816 PF04279 Intracellular septation protein A Lferr_0818 PF00459 Inositol monophosphatase family Lferr_0819 PF00588 SpoU rRNA Methylase family Lferr_0820 PF00132 Bacterial transferase hexapeptide (six repeats) Lferr_0821 PF02082 Transcriptional regulator Lferr_0822 PF00266 Aminotransferase class-V Lferr_0823 PF01592 NifU-like N terminal domain Lferr_0824 PF01521 Iron-sulphur cluster biosynthesis Lferr_0825 PF07743 HSCB C-terminal oligomerisation domain Lferr_0826 PF00012 Hsp70 protein Lferr_0827 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_0828 PF04384 Iron-sulphur cluster assembly Lferr_0830 PF01734 Patatin-like phospholipase Lferr_0832 PF04851 Type III restriction enzyme, res subunit Lferr_0832 PF00271 Helicase conserved C-terminal domain Lferr_0832 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Lferr_0832 PF08463 EcoEI R protein C-terminal Lferr_0833 PF12161 HsdM N-terminal domain Lferr_0833 PF02384 N-6 DNA Methylase Lferr_0835 PF01420 Type I restriction modification DNA specificity domain Lferr_0839 PF02634 FdhD/NarQ family Lferr_0841 PF00384 Molybdopterin oxidoreductase Lferr_0841 PF01568 Molydopterin dinucleotide binding domain Lferr_0842 PF00158 Sigma-54 interaction domain Lferr_0842 PF02954 Bacterial regulatory protein, Fis family Lferr_0842 PF01590 GAF domain Lferr_0844 PF04828 Glutathione-dependent formaldehyde-activating enzyme Lferr_0845 PF08240 Alcohol dehydrogenase GroES-like domain Lferr_0845 PF00107 Zinc-binding dehydrogenase Lferr_0846 PF00756 Putative esterase Lferr_0847 PF03466 LysR substrate binding domain Lferr_0847 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_0848 PF02954 Bacterial regulatory protein, Fis family Lferr_0848 PF00072 Response regulator receiver domain Lferr_0848 PF00158 Sigma-54 interaction domain Lferr_0850 PF00374 Nickel-dependent hydrogenase Lferr_0858 PF01106 NifU-like domain Lferr_0860 PF17788 HypF Kae1-like domain Lferr_0860 PF01300 Telomere recombination Lferr_0860 PF07503 HypF finger Lferr_0860 PF00708 Acylphosphatase Lferr_0861 PF01455 HupF/HypC family Lferr_0862 PF13580 SIS domain Lferr_0863 PF01924 Hydrogenase formation hypA family Lferr_0864 PF02769 AIR synthase related protein, C-terminal domain Lferr_0864 PF00586 AIR synthase related protein, N-terminal domain Lferr_0865 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lferr_0866 PF02492 CobW/HypB/UreG, nucleotide-binding domain Lferr_0868 PF01266 FAD dependent oxidoreductase Lferr_0870 PF00291 Pyridoxal-phosphate dependent enzyme Lferr_0870 PF00585 C-terminal regulatory domain of Threonine dehydratase Lferr_0875 PF01553 Acyltransferase Lferr_0876 PF01208 Uroporphyrinogen decarboxylase (URO-D) Lferr_0877 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_0877 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Lferr_0878 PF01493 GXGXG motif Lferr_0878 PF01645 Conserved region in glutamate synthase Lferr_0878 PF04898 Glutamate synthase central domain Lferr_0878 PF00310 Glutamine amidotransferases class-II Lferr_0879 PF13286 Phosphohydrolase-associated domain Lferr_0879 PF01966 HD domain Lferr_0880 PF02511 Thymidylate synthase complementing protein Lferr_0881 PF01761 3-dehydroquinate synthase Lferr_0882 PF01202 Shikimate kinase Lferr_0883 PF07660 Secretin and TonB N terminus short domain Lferr_0883 PF11741 AMIN domain Lferr_0883 PF03958 Bacterial type II/III secretion system short domain Lferr_0883 PF00263 Bacterial type II and III secretion system protein Lferr_0888 PF14437 MafB19-like deaminase Lferr_0889 PF01894 Uncharacterised protein family UPF0047 Lferr_0891 PF01713 Smr domain Lferr_0891 PF00488 MutS domain V Lferr_0892 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Lferr_0892 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Lferr_0892 PF00205 Thiamine pyrophosphate enzyme, central domain Lferr_0893 PF10369 Small subunit of acetolactate synthase Lferr_0894 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Lferr_0894 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Lferr_0895 PF02666 Phosphatidylserine decarboxylase Lferr_0896 PF01066 CDP-alcohol phosphatidyltransferase Lferr_0897 PF00224 Pyruvate kinase, barrel domain Lferr_0897 PF02887 Pyruvate kinase, alpha/beta domain Lferr_0898 PF00582 Universal stress protein family Lferr_0899 PF14489 QueF-like protein Lferr_0900 PF06470 SMC proteins Flexible Hinge Domain Lferr_0900 PF02463 RecF/RecN/SMC N terminal domain Lferr_0903 PF12826 Helix-hairpin-helix motif Lferr_0903 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Lferr_0903 PF03120 NAD-dependent DNA ligase OB-fold domain Lferr_0903 PF01653 NAD-dependent DNA ligase adenylation domain Lferr_0903 PF00533 BRCA1 C Terminus (BRCT) domain Lferr_0904 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Lferr_0904 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Lferr_0905 PF08241 Methyltransferase domain Lferr_0907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_0907 PF03466 LysR substrate binding domain Lferr_0909 PF01925 Sulfite exporter TauE/SafE Lferr_0911 PF01618 MotA/TolQ/ExbB proton channel family Lferr_0912 PF02472 Biopolymer transport protein ExbD/TolR Lferr_0915 PF01979 Amidohydrolase family Lferr_0916 PF00962 Adenosine/AMP deaminase Lferr_0918 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Lferr_0918 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_0918 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Lferr_0918 PF01799 [2Fe-2S] binding domain Lferr_0919 PF01799 [2Fe-2S] binding domain Lferr_0919 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_0922 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) Lferr_0923 PF13478 XdhC Rossmann domain Lferr_0923 PF02625 XdhC and CoxI family Lferr_0925 PF01425 Amidase Lferr_0927 PF12804 MobA-like NTP transferase domain Lferr_0930 PF01522 Polysaccharide deacetylase Lferr_0931 PF04820 Tryptophan halogenase Lferr_0935 PF00999 Sodium/hydrogen exchanger family Lferr_0939 PF00109 Beta-ketoacyl synthase, N-terminal domain Lferr_0939 PF02801 Beta-ketoacyl synthase, C-terminal domain Lferr_0952 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Lferr_0952 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Lferr_0952 PF01799 [2Fe-2S] binding domain Lferr_0953 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_0953 PF01799 [2Fe-2S] binding domain Lferr_0955 PF07690 Major Facilitator Superfamily Lferr_0956 PF00654 Voltage gated chloride channel Lferr_0957 PF00654 Voltage gated chloride channel Lferr_0958 PF03466 LysR substrate binding domain Lferr_0958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_0959 PF00690 Cation transporter/ATPase, N-terminus Lferr_0959 PF00689 Cation transporting ATPase, C-terminus Lferr_0965 PF17191 RecG wedge domain Lferr_0965 PF00270 DEAD/DEAH box helicase Lferr_0965 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Lferr_0969 PF11867 Domain of unknown function (DUF3387) Lferr_0969 PF18766 SWI2/SNF2 ATPase Lferr_0969 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Lferr_0971 PF17757 UvrB interaction domain Lferr_0971 PF12344 Ultra-violet resistance protein B Lferr_0971 PF02151 UvrB/uvrC motif Lferr_0971 PF04851 Type III restriction enzyme, res subunit Lferr_0971 PF00271 Helicase conserved C-terminal domain Lferr_0972 PF00107 Zinc-binding dehydrogenase Lferr_0972 PF08240 Alcohol dehydrogenase GroES-like domain Lferr_0973 PF00117 Glutamine amidotransferase class-I Lferr_0973 PF06418 CTP synthase N-terminus Lferr_0974 PF00793 DAHP synthetase I family Lferr_0975 PF00113 Enolase, C-terminal TIM barrel domain Lferr_0975 PF03952 Enolase, N-terminal domain Lferr_0976 PF04977 Septum formation initiator Lferr_0977 PF08207 Elongation factor P (EF-P) KOW-like domain Lferr_0977 PF01132 Elongation factor P (EF-P) OB domain Lferr_0977 PF09285 Elongation factor P, C-terminal Lferr_0979 PF01541 GIY-YIG catalytic domain Lferr_0979 PF02151 UvrB/uvrC motif Lferr_0979 PF08459 UvrC Helix-hairpin-helix N-terminal Lferr_0980 PF01066 CDP-alcohol phosphatidyltransferase Lferr_0981 PF00027 Cyclic nucleotide-binding domain Lferr_0981 PF13545 Crp-like helix-turn-helix domain Lferr_0982 PF04343 Protein of unknown function, DUF488 Lferr_0983 PF14759 Reductase C-terminal Lferr_0983 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_0984 PF00175 Oxidoreductase NAD-binding domain Lferr_0984 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_0984 PF00970 Oxidoreductase FAD-binding domain Lferr_0985 PF00970 Oxidoreductase FAD-binding domain Lferr_0985 PF00042 Globin Lferr_0985 PF00175 Oxidoreductase NAD-binding domain Lferr_0986 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Lferr_0986 PF00529 HlyD membrane-fusion protein of T1SS Lferr_0987 PF02321 Outer membrane efflux protein Lferr_0988 PF07690 Major Facilitator Superfamily Lferr_0989 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_0989 PF03466 LysR substrate binding domain Lferr_0994 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Lferr_0997 PF05362 Lon protease (S16) C-terminal proteolytic domain Lferr_0997 PF02190 ATP-dependent protease La (LON) substrate-binding domain Lferr_0997 PF00004 ATPase family associated with various cellular activities (AAA) Lferr_1001 PF00583 Acetyltransferase (GNAT) family Lferr_1003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_1003 PF03466 LysR substrate binding domain Lferr_1006 PF01593 Flavin containing amine oxidoreductase Lferr_1009 PF00589 Phage integrase family Lferr_1010 PF01906 Putative heavy-metal-binding Lferr_1012 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Lferr_1014 PF10672 S-adenosylmethionine-dependent methyltransferase Lferr_1014 PF17785 PUA-like domain Lferr_1015 PF01008 Initiation factor 2 subunit family Lferr_1016 PF00521 DNA gyrase/topoisomerase IV, subunit A Lferr_1016 PF03989 DNA gyrase C-terminal domain, beta-propeller Lferr_1017 PF00266 Aminotransferase class-V Lferr_1018 PF01842 ACT domain Lferr_1018 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Lferr_1018 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lferr_1019 PF01817 Chorismate mutase type II Lferr_1019 PF01842 ACT domain Lferr_1019 PF00800 Prephenate dehydratase Lferr_1020 PF00155 Aminotransferase class I and II Lferr_1021 PF00793 DAHP synthetase I family Lferr_1021 PF18152 DAHP synthase ferredoxin-like domain Lferr_1022 PF02153 Prephenate dehydrogenase Lferr_1022 PF01842 ACT domain Lferr_1023 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Lferr_1024 PF02224 Cytidylate kinase Lferr_1025 PF00575 S1 RNA binding domain Lferr_1026 PF00216 Bacterial DNA-binding protein Lferr_1027 PF18073 Rubredoxin metal binding domain Lferr_1028 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Lferr_1029 PF00156 Phosphoribosyl transferase domain Lferr_1030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Lferr_1030 PF05698 Bacterial trigger factor protein (TF) C-terminus Lferr_1030 PF05697 Bacterial trigger factor protein (TF) Lferr_1031 PF00574 Clp protease Lferr_1032 PF07724 AAA domain (Cdc48 subfamily) Lferr_1032 PF10431 C-terminal, D2-small domain, of ClpB protein Lferr_1032 PF06689 ClpX C4-type zinc finger Lferr_1033 PF05362 Lon protease (S16) C-terminal proteolytic domain Lferr_1033 PF02190 ATP-dependent protease La (LON) substrate-binding domain Lferr_1033 PF00004 ATPase family associated with various cellular activities (AAA) Lferr_1035 PF00216 Bacterial DNA-binding protein Lferr_1036 PF13145 PPIC-type PPIASE domain Lferr_1037 PF01569 PAP2 superfamily Lferr_1041 PF07690 Major Facilitator Superfamily Lferr_1042 PF04356 Protein of unknown function (DUF489) Lferr_1043 PF01909 Nucleotidyltransferase domain Lferr_1043 PF01966 HD domain Lferr_1043 PF08335 GlnD PII-uridylyltransferase Lferr_1043 PF01842 ACT domain Lferr_1044 PF00557 Metallopeptidase family M24 Lferr_1045 PF03749 Sugar fermentation stimulation protein RE domain Lferr_1045 PF17746 SfsA N-terminal OB domain Lferr_1046 PF00749 tRNA synthetases class I (E and Q), catalytic domain Lferr_1047 PF02769 AIR synthase related protein, C-terminal domain Lferr_1047 PF00586 AIR synthase related protein, N-terminal domain Lferr_1048 PF04608 Phosphatidylglycerophosphatase A Lferr_1050 PF00154 recA bacterial DNA recombination protein Lferr_1051 PF02631 RecX family Lferr_1052 PF02272 DHHA1 domain Lferr_1052 PF01411 tRNA synthetases class II (A) Lferr_1052 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Lferr_1057 PF00175 Oxidoreductase NAD-binding domain Lferr_1057 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_1057 PF00970 Oxidoreductase FAD-binding domain Lferr_1059 PF01551 Peptidase family M23 Lferr_1059 PF10145 Phage-related minor tail protein Lferr_1059 PF01464 Transglycosylase SLT domain Lferr_1060 PF00176 SNF2 family N-terminal domain Lferr_1060 PF00271 Helicase conserved C-terminal domain Lferr_1060 PF12419 SNF2 Helicase protein Lferr_1061 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Lferr_1061 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Lferr_1061 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Lferr_1061 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Lferr_1063 PF12848 ABC transporter Lferr_1063 PF00005 ABC transporter Lferr_1064 PF13667 ThiC-associated domain Lferr_1064 PF01964 Radical SAM ThiC family Lferr_1066 PF05199 GMC oxidoreductase Lferr_1066 PF00732 GMC oxidoreductase Lferr_1067 PF00171 Aldehyde dehydrogenase family Lferr_1069 PF02322 Cytochrome bd terminal oxidase subunit II Lferr_1070 PF01654 Cytochrome bd terminal oxidase subunit I Lferr_1072 PF02954 Bacterial regulatory protein, Fis family Lferr_1072 PF00158 Sigma-54 interaction domain Lferr_1072 PF00072 Response regulator receiver domain Lferr_1073 PF02230 Phospholipase/Carboxylesterase Lferr_1074 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lferr_1074 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_1075 PF04349 Periplasmic glucan biosynthesis protein, MdoG Lferr_1077 PF00535 Glycosyl transferase family 2 Lferr_1079 PF04241 Protein of unknown function (DUF423) Lferr_1087 PF00482 Type II secretion system (T2SS), protein F Lferr_1088 PF08496 Peptidase family S49 N-terminal Lferr_1088 PF01343 Peptidase family S49 Lferr_1089 PF02597 ThiS family Lferr_1090 PF02391 MoaE protein Lferr_1091 PF04461 Protein of unknown function (DUF520) Lferr_1093 PF08669 Glycine cleavage T-protein C-terminal barrel domain Lferr_1093 PF01571 Aminomethyltransferase folate-binding domain Lferr_1094 PF01597 Glycine cleavage H-protein Lferr_1095 PF02347 Glycine cleavage system P-protein Lferr_1096 PF02347 Glycine cleavage system P-protein Lferr_1097 PF00005 ABC transporter Lferr_1097 PF00664 ABC transporter transmembrane region Lferr_1098 PF11953 Domain of unknown function (DUF3470) Lferr_1098 PF00037 4Fe-4S binding domain Lferr_1099 PF10417 C-terminal domain of 1-Cys peroxiredoxin Lferr_1099 PF00578 AhpC/TSA family Lferr_1101 PF02811 PHP domain Lferr_1102 PF01594 AI-2E family transporter Lferr_1105 PF08032 RNA 2'-O ribose methyltransferase substrate binding Lferr_1105 PF00588 SpoU rRNA Methylase family Lferr_1106 PF01026 TatD related DNase Lferr_1107 PF12706 Beta-lactamase superfamily domain Lferr_1107 PF03099 Biotin/lipoate A/B protein ligase family Lferr_1109 PF00005 ABC transporter Lferr_1109 PF00664 ABC transporter transmembrane region Lferr_1110 PF00664 ABC transporter transmembrane region Lferr_1110 PF00005 ABC transporter Lferr_1112 PF01571 Aminomethyltransferase folate-binding domain Lferr_1114 PF00890 FAD binding domain Lferr_1114 PF02910 Fumarate reductase flavoprotein C-term Lferr_1115 PF08281 Sigma-70, region 4 Lferr_1115 PF04542 Sigma-70 region 2 Lferr_1117 PF13180 PDZ domain Lferr_1118 PF00679 Elongation factor G C-terminus Lferr_1118 PF06421 GTP-binding protein LepA C-terminus Lferr_1118 PF03144 Elongation factor Tu domain 2 Lferr_1118 PF00009 Elongation factor Tu GTP binding domain Lferr_1119 PF10502 Signal peptidase, peptidase S26 Lferr_1121 PF00035 Double-stranded RNA binding motif Lferr_1121 PF14622 Ribonuclease-III-like Lferr_1122 PF07650 KH domain Lferr_1122 PF01926 50S ribosome-binding GTPase Lferr_1123 PF11967 Recombination protein O N terminal Lferr_1123 PF02565 Recombination protein O C terminal Lferr_1124 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Lferr_1125 PF01648 4'-phosphopantetheinyl transferase superfamily Lferr_1129 PF00294 pfkB family carbohydrate kinase Lferr_1129 PF01467 Cytidylyltransferase-like Lferr_1130 PF01171 PP-loop family Lferr_1131 PF01430 Hsp33 protein Lferr_1132 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system Lferr_1142 PF13439 Glycosyltransferase Family 4 Lferr_1142 PF00534 Glycosyl transferases group 1 Lferr_1143 PF13439 Glycosyltransferase Family 4 Lferr_1143 PF00534 Glycosyl transferases group 1 Lferr_1146 PF00034 Cytochrome c Lferr_1147 PF01545 Cation efflux family Lferr_1150 PF00270 DEAD/DEAH box helicase Lferr_1150 PF00271 Helicase conserved C-terminal domain Lferr_1151 PF00072 Response regulator receiver domain Lferr_1151 PF00486 Transcriptional regulatory protein, C terminal Lferr_1152 PF00512 His Kinase A (phospho-acceptor) domain Lferr_1152 PF00989 PAS fold Lferr_1152 PF11808 Phosphate regulon sensor protein PhoR Lferr_1152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_1153 PF12849 PBP superfamily domain Lferr_1154 PF00528 Binding-protein-dependent transport system inner membrane component Lferr_1155 PF00528 Binding-protein-dependent transport system inner membrane component Lferr_1156 PF00005 ABC transporter Lferr_1157 PF01895 PhoU domain Lferr_1158 PF02541 Ppx/GppA phosphatase family Lferr_1160 PF00318 Ribosomal protein S2 Lferr_1161 PF00889 Elongation factor TS Lferr_1162 PF00696 Amino acid kinase family Lferr_1163 PF01765 Ribosome recycling factor Lferr_1164 PF01255 Putative undecaprenyl diphosphate synthase Lferr_1166 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Lferr_1166 PF13288 DXP reductoisomerase C-terminal domain Lferr_1166 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lferr_1167 PF17820 PDZ domain Lferr_1167 PF02163 Peptidase family M50 Lferr_1168 PF07244 Surface antigen variable number repeat Lferr_1168 PF01103 Surface antigen Lferr_1170 PF00132 Bacterial transferase hexapeptide (six repeats) Lferr_1170 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Lferr_1171 PF07977 FabA-like domain Lferr_1172 PF00132 Bacterial transferase hexapeptide (six repeats) Lferr_1172 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Lferr_1173 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Lferr_1173 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Lferr_1174 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Lferr_1175 PF02684 Lipid-A-disaccharide synthetase Lferr_1176 PF01351 Ribonuclease HII Lferr_1177 PF14579 Helix-hairpin-helix motif Lferr_1177 PF07733 Bacterial DNA polymerase III alpha NTPase domain Lferr_1177 PF02811 PHP domain Lferr_1177 PF01336 OB-fold nucleic acid binding domain Lferr_1177 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Lferr_1178 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Lferr_1179 PF01171 PP-loop family Lferr_1179 PF09179 TilS substrate binding domain Lferr_1179 PF11734 TilS substrate C-terminal domain Lferr_1180 PF01979 Amidohydrolase family Lferr_1181 PF01258 Prokaryotic dksA/traR C4-type zinc finger Lferr_1182 PF13419 Haloacid dehalogenase-like hydrolase Lferr_1184 PF00578 AhpC/TSA family Lferr_1185 PF13638 PIN domain Lferr_1185 PF02562 PhoH-like protein Lferr_1186 PF17810 Arginine decarboxylase helical bundle domain Lferr_1186 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Lferr_1186 PF17944 Arginine decarboxylase C-terminal helical extension Lferr_1188 PF01557 Fumarylacetoacetate (FAA) hydrolase family Lferr_1194 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_1195 PF00766 Electron transfer flavoprotein FAD-binding domain Lferr_1195 PF01012 Electron transfer flavoprotein domain Lferr_1196 PF01012 Electron transfer flavoprotein domain Lferr_1197 PF01152 Bacterial-like globin Lferr_1200 PF01618 MotA/TolQ/ExbB proton channel family Lferr_1201 PF02472 Biopolymer transport protein ExbD/TolR Lferr_1206 PF00005 ABC transporter Lferr_1213 PF01032 FecCD transport family Lferr_1220 PF00581 Rhodanese-like domain Lferr_1222 PF03206 Nitrogen fixation protein NifW Lferr_1223 PF00132 Bacterial transferase hexapeptide (six repeats) Lferr_1224 PF00682 HMGL-like Lferr_1225 PF00266 Aminotransferase class-V Lferr_1226 PF04324 BFD-like [2Fe-2S] binding domain Lferr_1226 PF01106 NifU-like domain Lferr_1226 PF01592 NifU-like N terminal domain Lferr_1227 PF01521 Iron-sulphur cluster biosynthesis Lferr_1229 PF04891 NifQ Lferr_1230 PF12838 4Fe-4S dicluster domain Lferr_1231 PF05082 Rop-like Lferr_1232 PF03270 Protein of unknown function, DUF269 Lferr_1233 PF02579 Dinitrogenase iron-molybdenum cofactor Lferr_1234 PF00148 Nitrogenase component 1 type Oxidoreductase Lferr_1235 PF00148 Nitrogenase component 1 type Oxidoreductase Lferr_1235 PF04324 BFD-like [2Fe-2S] binding domain Lferr_1237 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_1238 PF00148 Nitrogenase component 1 type Oxidoreductase Lferr_1238 PF11844 Domain of unknown function (DUF3364) Lferr_1239 PF00148 Nitrogenase component 1 type Oxidoreductase Lferr_1240 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Lferr_1242 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) Lferr_1243 PF03747 ADP-ribosylglycohydrolase Lferr_1244 PF00158 Sigma-54 interaction domain Lferr_1244 PF01590 GAF domain Lferr_1244 PF02954 Bacterial regulatory protein, Fis family Lferr_1245 PF02579 Dinitrogenase iron-molybdenum cofactor Lferr_1245 PF04055 Radical SAM superfamily Lferr_1246 PF00037 4Fe-4S binding domain Lferr_1247 PF01521 Iron-sulphur cluster biosynthesis Lferr_1250 PF05484 LRV protein FeS4 cluster Lferr_1250 PF01816 Leucine rich repeat variant Lferr_1251 PF04319 NifZ domain Lferr_1253 PF00266 Aminotransferase class-V Lferr_1254 PF06988 NifT/FixU protein Lferr_1256 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Lferr_1257 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_1260 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Lferr_1260 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Lferr_1261 PF03459 TOBE domain Lferr_1261 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_1262 PF00171 Aldehyde dehydrogenase family Lferr_1266 PF00294 pfkB family carbohydrate kinase Lferr_1267 PF00534 Glycosyl transferases group 1 Lferr_1267 PF00862 Sucrose synthase Lferr_1268 PF00534 Glycosyl transferases group 1 Lferr_1268 PF00862 Sucrose synthase Lferr_1269 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Lferr_1269 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Lferr_1271 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_1271 PF00589 Phage integrase family Lferr_1277 PF01695 IstB-like ATP binding protein Lferr_1280 PF00436 Single-strand binding protein family Lferr_1284 PF10544 T5orf172 domain Lferr_1289 PF01850 PIN domain Lferr_1290 PF09957 Bacterial antitoxin of type II TA system, VapB Lferr_1293 PF00216 Bacterial DNA-binding protein Lferr_1294 PF00216 Bacterial DNA-binding protein Lferr_1299 PF04221 RelB antitoxin Lferr_1301 PF00501 AMP-binding enzyme Lferr_1301 PF13193 AMP-binding enzyme C-terminal domain Lferr_1301 PF01553 Acyltransferase Lferr_1326 PF03050 Transposase IS66 family Lferr_1326 PF13817 IS66 C-terminal element Lferr_1326 PF13007 Transposase C of IS166 homeodomain Lferr_1326 PF13005 zinc-finger binding domain of transposase IS66 Lferr_1331 PF05973 Phage derived protein Gp49-like (DUF891) Lferr_1332 PF01381 Helix-turn-helix Lferr_1334 PF00437 Type II/IV secretion system protein Lferr_1339 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Lferr_1346 PF13180 PDZ domain Lferr_1347 PF00011 Hsp20/alpha crystallin family Lferr_1349 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Lferr_1349 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Lferr_1350 PF00384 Molybdopterin oxidoreductase Lferr_1352 PF02634 FdhD/NarQ family Lferr_1354 PF00970 Oxidoreductase FAD-binding domain Lferr_1354 PF00111 2Fe-2S iron-sulfur cluster binding domain Lferr_1354 PF00175 Oxidoreductase NAD-binding domain Lferr_1355 PF03063 Prismane/CO dehydrogenase family Lferr_1356 PF00027 Cyclic nucleotide-binding domain Lferr_1356 PF13545 Crp-like helix-turn-helix domain Lferr_1358 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Lferr_1359 PF00361 Proton-conducting membrane transporter Lferr_1359 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Lferr_1360 PF02754 Cysteine-rich domain Lferr_1360 PF13183 4Fe-4S dicluster domain Lferr_1361 PF01565 FAD binding domain Lferr_1362 PF01565 FAD binding domain Lferr_1362 PF02913 FAD linked oxidases, C-terminal domain Lferr_1365 PF09339 IclR helix-turn-helix domain Lferr_1365 PF01614 Bacterial transcriptional regulator Lferr_1369 PF01979 Amidohydrolase family Lferr_1370 PF00920 Dehydratase family Lferr_1371 PF03481 Putative GTP-binding controlling metal-binding Lferr_1371 PF01300 Telomere recombination Lferr_1374 PF01116 Fructose-bisphosphate aldolase class-II Lferr_1376 PF07728 AAA domain (dynein-related subfamily) Lferr_1376 PF08406 CbbQ/NirQ/NorQ C-terminal Lferr_1378 PF13614 AAA domain Lferr_1380 PF00210 Ferritin-like domain Lferr_1385 PF03319 Ethanolamine utilisation protein EutN/carboxysome Lferr_1388 PF00101 Ribulose bisphosphate carboxylase, small chain Lferr_1389 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Lferr_1389 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Lferr_1390 PF03466 LysR substrate binding domain Lferr_1390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_1392 PF04335 VirB8 protein Lferr_1397 PF01464 Transglycosylase SLT domain Lferr_1398 PF02534 Type IV secretory system Conjugative DNA transfer Lferr_1405 PF03707 Bacterial signalling protein N terminal repeat Lferr_1405 PF00563 EAL domain Lferr_1405 PF00990 Diguanylate cyclase, GGDEF domain Lferr_1410 PF17762 HTH domain found in ParB protein Lferr_1410 PF02195 ParB-like nuclease domain Lferr_1411 PF13614 AAA domain Lferr_1414 PF00248 Aldo/keto reductase family Lferr_1415 PF00990 Diguanylate cyclase, GGDEF domain Lferr_1415 PF00563 EAL domain Lferr_1415 PF03707 Bacterial signalling protein N terminal repeat Lferr_1424 PF01381 Helix-turn-helix Lferr_1425 PF01131 DNA topoisomerase Lferr_1425 PF01751 Toprim domain Lferr_1426 PF13333 Integrase core domain Lferr_1426 PF00665 Integrase core domain Lferr_1426 PF13276 HTH-like domain Lferr_1427 PF01527 Transposase Lferr_1431 PF00484 Carbonic anhydrase Lferr_1432 PF00817 impB/mucB/samB family Lferr_1432 PF11799 impB/mucB/samB family C-terminal domain Lferr_1434 PF13396 Phospholipase_D-nuclease N-terminal Lferr_1434 PF13091 PLD-like domain Lferr_1437 PF00488 MutS domain V Lferr_1437 PF05192 MutS domain III Lferr_1437 PF05188 MutS domain II Lferr_1437 PF05190 MutS family domain IV Lferr_1437 PF01624 MutS domain I Lferr_1439 PF04461 Protein of unknown function (DUF520) Lferr_1440 PF00534 Glycosyl transferases group 1 Lferr_1440 PF13439 Glycosyltransferase Family 4 Lferr_1441 PF01027 Inhibitor of apoptosis-promoting Bax1 Lferr_1445 PF01565 FAD binding domain Lferr_1445 PF02913 FAD linked oxidases, C-terminal domain Lferr_1446 PF02569 Pantoate-beta-alanine ligase Lferr_1447 PF02548 Ketopantoate hydroxymethyltransferase Lferr_1448 PF01712 Deoxynucleoside kinase Lferr_1449 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Lferr_1450 PF12627 Probable RNA and SrmB- binding site of polymerase A Lferr_1450 PF01966 HD domain Lferr_1450 PF01743 Poly A polymerase head domain Lferr_1451 PF12627 Probable RNA and SrmB- binding site of polymerase A Lferr_1451 PF12626 Polymerase A arginine-rich C-terminus Lferr_1451 PF01743 Poly A polymerase head domain Lferr_1452 PF00535 Glycosyl transferase family 2 Lferr_1453 PF00478 IMP dehydrogenase / GMP reductase domain Lferr_1453 PF00571 CBS domain Lferr_1454 PF00958 GMP synthase C terminal domain Lferr_1454 PF02540 NAD synthase Lferr_1454 PF00117 Glutamine amidotransferase class-I Lferr_1456 PF01850 PIN domain Lferr_1459 PF13520 Amino acid permease Lferr_1460 PF00696 Amino acid kinase family Lferr_1460 PF01472 PUA domain Lferr_1461 PF12795 Mechanosensitive ion channel porin domain Lferr_1461 PF12794 Mechanosensitive ion channel inner membrane domain 1 Lferr_1461 PF00924 Mechanosensitive ion channel Lferr_1464 PF01300 Telomere recombination Lferr_1465 PF02163 Peptidase family M50 Lferr_1466 PF00579 tRNA synthetases class I (W and Y) Lferr_1467 PF02616 Segregation and condensation protein ScpA Lferr_1468 PF04079 Segregation and condensation complex subunit ScpB Lferr_1469 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_1470 PF00849 RNA pseudouridylate synthase Lferr_1470 PF01479 S4 domain Lferr_1474 PF07690 Major Facilitator Superfamily Lferr_1476 PF00343 Carbohydrate phosphorylase Lferr_1476 PF11897 Protein of unknown function (DUF3417) Lferr_1478 PF00391 PEP-utilising enzyme, mobile domain Lferr_1478 PF00224 Pyruvate kinase, barrel domain Lferr_1478 PF02887 Pyruvate kinase, alpha/beta domain Lferr_1480 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_1480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lferr_1482 PF00294 pfkB family carbohydrate kinase Lferr_1483 PF01515 Phosphate acetyl/butaryl transferase Lferr_1484 PF00083 Sugar (and other) transporter Lferr_1488 PF02817 e3 binding domain Lferr_1488 PF00364 Biotin-requiring enzyme Lferr_1488 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Lferr_1489 PF02780 Transketolase, C-terminal domain Lferr_1489 PF02779 Transketolase, pyrimidine binding domain Lferr_1490 PF00676 Dehydrogenase E1 component Lferr_1492 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Lferr_1492 PF01676 Metalloenzyme superfamily Lferr_1493 PF00391 PEP-utilising enzyme, mobile domain Lferr_1493 PF02896 PEP-utilising enzyme, TIM barrel domain Lferr_1493 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Lferr_1495 PF03330 Lytic transglycolase Lferr_1495 PF05036 Sporulation related domain Lferr_1496 PF01546 Peptidase family M20/M25/M40 Lferr_1496 PF07687 Peptidase dimerisation domain Lferr_1497 PF14602 Hexapeptide repeat of succinyl-transferase Lferr_1497 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Lferr_1497 PF00132 Bacterial transferase hexapeptide (six repeats) Lferr_1498 PF00155 Aminotransferase class I and II Lferr_1500 PF13419 Haloacid dehalogenase-like hydrolase Lferr_1502 PF01979 Amidohydrolase family Lferr_1504 PF00877 NlpC/P60 family Lferr_1504 PF01476 LysM domain Lferr_1508 PF00140 Sigma-70 factor, region 1.2 Lferr_1508 PF04542 Sigma-70 region 2 Lferr_1508 PF04539 Sigma-70 region 3 Lferr_1508 PF04545 Sigma-70, region 4 Lferr_1515 PF01695 IstB-like ATP binding protein Lferr_1516 PF00665 Integrase core domain Lferr_1522 PF02779 Transketolase, pyrimidine binding domain Lferr_1522 PF02780 Transketolase, C-terminal domain Lferr_1522 PF00456 Transketolase, thiamine diphosphate binding domain Lferr_1523 PF11953 Domain of unknown function (DUF3470) Lferr_1523 PF00037 4Fe-4S binding domain Lferr_1525 PF03595 Voltage-dependent anion channel Lferr_1527 PF00730 HhH-GPD superfamily base excision DNA repair protein Lferr_1527 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain Lferr_1529 PF00535 Glycosyl transferase family 2 Lferr_1534 PF05199 GMC oxidoreductase Lferr_1534 PF00732 GMC oxidoreductase Lferr_1537 PF01329 Pterin 4 alpha carbinolamine dehydratase Lferr_1543 PF01726 LexA DNA binding domain Lferr_1543 PF00717 Peptidase S24-like Lferr_1546 PF01336 OB-fold nucleic acid binding domain Lferr_1546 PF14579 Helix-hairpin-helix motif Lferr_1546 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Lferr_1546 PF07733 Bacterial DNA polymerase III alpha NTPase domain Lferr_1546 PF02811 PHP domain Lferr_1548 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Lferr_1548 PF11940 Domain of unknown function (DUF3458) Ig-like fold Lferr_1548 PF01433 Peptidase family M1 domain Lferr_1551 PF13089 Polyphosphate kinase N-terminal domain Lferr_1551 PF17941 Polyphosphate kinase C-terminal domain 1 Lferr_1551 PF13090 Polyphosphate kinase C-terminal domain 2 Lferr_1551 PF02503 Polyphosphate kinase middle domain Lferr_1552 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Lferr_1552 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Lferr_1553 PF00873 AcrB/AcrD/AcrF family Lferr_1554 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Lferr_1555 PF02321 Outer membrane efflux protein Lferr_1557 PF02545 Maf-like protein Lferr_1558 PF00311 Phosphoenolpyruvate carboxylase Lferr_1559 PF17209 Hfq protein Lferr_1560 PF01926 50S ribosome-binding GTPase Lferr_1560 PF13167 GTP-binding GTPase N-terminal Lferr_1560 PF16360 GTP-binding GTPase Middle Region Lferr_1561 PF01145 SPFH domain / Band 7 family Lferr_1562 PF01145 SPFH domain / Band 7 family Lferr_1563 PF13393 Histidyl-tRNA synthetase Lferr_1564 PF00709 Adenylosuccinate synthetase Lferr_1565 PF00773 RNB domain Lferr_1565 PF08206 Ribonuclease B OB domain Lferr_1565 PF08461 Ribonuclease R winged-helix domain Lferr_1565 PF17876 Cold shock domain Lferr_1566 PF03976 Polyphosphate kinase 2 (PPK2) Lferr_1567 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_1567 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lferr_1568 PF00994 Probable molybdopterin binding domain Lferr_1568 PF02464 Competence-damaged protein Lferr_1569 PF01548 Transposase Lferr_1569 PF02371 Transposase IS116/IS110/IS902 family Lferr_1570 PF00551 Formyl transferase Lferr_1571 PF01548 Transposase Lferr_1571 PF02371 Transposase IS116/IS110/IS902 family Lferr_1572 PF00551 Formyl transferase Lferr_1573 PF00586 AIR synthase related protein, N-terminal domain Lferr_1573 PF02769 AIR synthase related protein, C-terminal domain Lferr_1574 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Lferr_1574 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Lferr_1575 PF01066 CDP-alcohol phosphatidyltransferase Lferr_1576 PF11638 DnaA N-terminal domain Lferr_1576 PF08299 Bacterial dnaA protein helix-turn-helix Lferr_1576 PF00308 Bacterial dnaA protein Lferr_1577 PF03631 Virulence factor BrkB Lferr_1579 PF01783 Ribosomal L32p protein family Lferr_1580 PF02504 Fatty acid synthesis protein Lferr_1581 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Lferr_1581 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Lferr_1582 PF00698 Acyl transferase domain Lferr_1584 PF00550 Phosphopantetheine attachment site Lferr_1585 PF02801 Beta-ketoacyl synthase, C-terminal domain Lferr_1585 PF00109 Beta-ketoacyl synthase, N-terminal domain Lferr_1587 PF02618 YceG-like family Lferr_1588 PF02223 Thymidylate kinase Lferr_1589 PF09115 DNA polymerase III, delta subunit, C terminal Lferr_1591 PF12170 DNA polymerase III tau subunit V interacting with alpha Lferr_1591 PF12169 DNA polymerase III subunits gamma and tau domain III Lferr_1591 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Lferr_1592 PF02575 YbaB/EbfC DNA-binding family Lferr_1593 PF13662 Toprim domain Lferr_1593 PF02132 RecR protein Lferr_1594 PF00909 Ammonium Transporter Family Lferr_1595 PF03853 YjeF-related protein N-terminus Lferr_1595 PF01256 Carbohydrate kinase Lferr_1596 PF00202 Aminotransferase class-III Lferr_1598 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Lferr_1599 PF08676 MutL C terminal dimerisation domain Lferr_1599 PF01119 DNA mismatch repair protein, C-terminal domain Lferr_1601 PF00334 Nucleoside diphosphate kinase Lferr_1602 PF04055 Radical SAM superfamily Lferr_1604 PF13464 Domain of unknown function (DUF4115) Lferr_1605 PF04551 GcpE protein Lferr_1606 PF03129 Anticodon binding domain Lferr_1606 PF13393 Histidyl-tRNA synthetase Lferr_1609 PF01926 50S ribosome-binding GTPase Lferr_1609 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Lferr_1611 PF12849 PBP superfamily domain Lferr_1612 PF00528 Binding-protein-dependent transport system inner membrane component Lferr_1613 PF00528 Binding-protein-dependent transport system inner membrane component Lferr_1616 PF01925 Sulfite exporter TauE/SafE Lferr_1617 PF00873 AcrB/AcrD/AcrF family Lferr_1618 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Lferr_1620 PF01161 Phosphatidylethanolamine-binding protein Lferr_1622 PF11953 Domain of unknown function (DUF3470) Lferr_1622 PF00037 4Fe-4S binding domain Lferr_1624 PF01266 FAD dependent oxidoreductase Lferr_1626 PF01103 Surface antigen Lferr_1626 PF07244 Surface antigen variable number repeat Lferr_1626 PF17243 POTRA domain TamA domain 1 Lferr_1630 PF00034 Cytochrome c Lferr_1634 PF01370 NAD dependent epimerase/dehydratase family Lferr_1635 PF01370 NAD dependent epimerase/dehydratase family Lferr_1636 PF02080 TrkA-C domain Lferr_1636 PF00999 Sodium/hydrogen exchanger family Lferr_1636 PF02254 TrkA-N domain Lferr_1637 PF00501 AMP-binding enzyme Lferr_1637 PF16177 Acetyl-coenzyme A synthetase N-terminus Lferr_1637 PF13193 AMP-binding enzyme C-terminal domain Lferr_1638 PF00004 ATPase family associated with various cellular activities (AAA) Lferr_1638 PF10431 C-terminal, D2-small domain, of ClpB protein Lferr_1638 PF07724 AAA domain (Cdc48 subfamily) Lferr_1638 PF17871 AAA lid domain Lferr_1638 PF02861 Clp amino terminal domain, pathogenicity island component Lferr_1640 PF01264 Chorismate synthase Lferr_1641 PF02649 Type I GTP cyclohydrolase folE2 Lferr_1642 PF02779 Transketolase, pyrimidine binding domain Lferr_1642 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Lferr_1642 PF02780 Transketolase, C-terminal domain Lferr_1643 PF00348 Polyprenyl synthetase Lferr_1644 PF02609 Exonuclease VII small subunit Lferr_1645 PF07690 Major Facilitator Superfamily Lferr_1647 PF00085 Thioredoxin Lferr_1648 PF13742 OB-fold nucleic acid binding domain Lferr_1648 PF02601 Exonuclease VII, large subunit Lferr_1649 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Lferr_1649 PF01011 PQQ enzyme repeat Lferr_1649 PF13360 PQQ-like domain Lferr_1655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Lferr_1656 PF00149 Calcineurin-like phosphoesterase Lferr_1657 PF00690 Cation transporter/ATPase, N-terminus Lferr_1657 PF00689 Cation transporting ATPase, C-terminus Lferr_1658 PF08502 LeuA allosteric (dimerisation) domain Lferr_1658 PF00682 HMGL-like Lferr_1659 PF01037 Lrp/AsnC ligand binding domain Lferr_1662 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_1662 PF03466 LysR substrate binding domain Lferr_1663 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Lferr_1664 PF00196 Bacterial regulatory proteins, luxR family Lferr_1664 PF03472 Autoinducer binding domain Lferr_1666 PF00765 Autoinducer synthase Lferr_1668 PF01878 EVE domain Lferr_1670 PF00005 ABC transporter Lferr_1672 PF01965 DJ-1/PfpI family Lferr_1678 PF17074 Darcynin, domain of unknown function Lferr_1679 PF01047 MarR family Lferr_1680 PF02627 Carboxymuconolactone decarboxylase family Lferr_1681 PF00583 Acetyltransferase (GNAT) family Lferr_1686 PF00403 Heavy-metal-associated domain Lferr_1687 PF00155 Aminotransferase class I and II Lferr_1688 PF02222 ATP-grasp domain Lferr_1688 PF01370 NAD dependent epimerase/dehydratase family Lferr_1689 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Lferr_1689 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Lferr_1690 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Lferr_1690 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Lferr_1691 PF01022 Bacterial regulatory protein, arsR family Lferr_1692 PF01207 Dihydrouridine synthase (Dus) Lferr_1693 PF00521 DNA gyrase/topoisomerase IV, subunit A Lferr_1694 PF00204 DNA gyrase B Lferr_1694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_1694 PF01751 Toprim domain Lferr_1694 PF00986 DNA gyrase B subunit, carboxyl terminus Lferr_1695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_1695 PF00512 His Kinase A (phospho-acceptor) domain Lferr_1695 PF08521 Two-component sensor kinase N-terminal Lferr_1696 PF00486 Transcriptional regulatory protein, C terminal Lferr_1696 PF00072 Response regulator receiver domain Lferr_1699 PF00873 AcrB/AcrD/AcrF family Lferr_1704 PF00873 AcrB/AcrD/AcrF family Lferr_1712 PF09363 XFP C-terminal domain Lferr_1712 PF09364 XFP N-terminal domain Lferr_1712 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Lferr_1714 PF07549 SecD/SecF GG Motif Lferr_1714 PF02355 Protein export membrane protein Lferr_1715 PF07549 SecD/SecF GG Motif Lferr_1715 PF02355 Protein export membrane protein Lferr_1715 PF13721 SecD export protein N-terminal TM region Lferr_1716 PF02699 Preprotein translocase subunit Lferr_1717 PF01702 Queuine tRNA-ribosyltransferase Lferr_1718 PF02547 Queuosine biosynthesis protein Lferr_1719 PF03471 Transporter associated domain Lferr_1719 PF00571 CBS domain Lferr_1719 PF01595 Cyclin M transmembrane N-terminal domain Lferr_1721 PF01053 Cys/Met metabolism PLP-dependent enzyme Lferr_1722 PF00156 Phosphoribosyl transferase domain Lferr_1722 PF13537 Glutamine amidotransferase domain Lferr_1724 PF02875 Mur ligase family, glutamate ligase domain Lferr_1724 PF08245 Mur ligase middle domain Lferr_1725 PF17848 Acetyl-coA carboxylase zinc finger domain Lferr_1725 PF01039 Carboxyl transferase domain Lferr_1726 PF00290 Tryptophan synthase alpha chain Lferr_1727 PF00291 Pyridoxal-phosphate dependent enzyme Lferr_1728 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Lferr_1729 PF01416 tRNA pseudouridine synthase Lferr_1731 PF02774 Semialdehyde dehydrogenase, dimerisation domain Lferr_1731 PF01118 Semialdehyde dehydrogenase, NAD binding domain Lferr_1732 PF00180 Isocitrate/isopropylmalate dehydrogenase Lferr_1733 PF12804 MobA-like NTP transferase domain Lferr_1734 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Lferr_1735 PF03454 MoeA C-terminal region (domain IV) Lferr_1735 PF03453 MoeA N-terminal region (domain I and II) Lferr_1735 PF00994 Probable molybdopterin binding domain Lferr_1736 PF13091 PLD-like domain Lferr_1737 PF01343 Peptidase family S49 Lferr_1738 PF00128 Alpha amylase, catalytic domain Lferr_1739 PF11941 Domain of unknown function (DUF3459) Lferr_1739 PF00128 Alpha amylase, catalytic domain Lferr_1740 PF00534 Glycosyl transferases group 1 Lferr_1742 PF00156 Phosphoribosyl transferase domain Lferr_1742 PF01738 Dienelactone hydrolase family Lferr_1743 PF00011 Hsp20/alpha crystallin family Lferr_1744 PF08240 Alcohol dehydrogenase GroES-like domain Lferr_1746 PF01435 Peptidase family M48 Lferr_1747 PF07690 Major Facilitator Superfamily Lferr_1756 PF13005 zinc-finger binding domain of transposase IS66 Lferr_1756 PF13007 Transposase C of IS166 homeodomain Lferr_1756 PF13817 IS66 C-terminal element Lferr_1756 PF03050 Transposase IS66 family Lferr_1760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Lferr_1761 PF00873 AcrB/AcrD/AcrF family Lferr_1762 PF00005 ABC transporter Lferr_1769 PF02637 GatB domain Lferr_1769 PF02934 GatB/GatE catalytic domain Lferr_1770 PF01425 Amidase Lferr_1771 PF02686 Glu-tRNAGln amidotransferase C subunit Lferr_1774 PF04055 Radical SAM superfamily Lferr_1774 PF06463 Molybdenum Cofactor Synthesis C Lferr_1778 PF04794 YdjC-like protein Lferr_1781 PF01370 NAD dependent epimerase/dehydratase family Lferr_1782 PF01048 Phosphorylase superfamily Lferr_1783 PF13249 Squalene-hopene cyclase N-terminal domain Lferr_1783 PF13243 Squalene-hopene cyclase C-terminal domain Lferr_1785 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lferr_1785 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Lferr_1786 PF02556 Preprotein translocase subunit SecB Lferr_1788 PF01850 PIN domain Lferr_1790 PF00171 Aldehyde dehydrogenase family Lferr_1791 PF03129 Anticodon binding domain Lferr_1791 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Lferr_1791 PF04073 Aminoacyl-tRNA editing domain Lferr_1792 PF00582 Universal stress protein family Lferr_1798 PF13277 YmdB-like protein Lferr_1799 PF01812 5-formyltetrahydrofolate cyclo-ligase family Lferr_1802 PF00905 Penicillin binding protein transpeptidase domain Lferr_1802 PF03717 Penicillin-binding Protein dimerisation domain Lferr_1803 PF01386 Ribosomal L25p family Lferr_1803 PF14693 Ribosomal protein TL5, C-terminal domain Lferr_1804 PF01195 Peptidyl-tRNA hydrolase Lferr_1805 PF06071 Protein of unknown function (DUF933) Lferr_1805 PF01926 50S ribosome-binding GTPase Lferr_1806 PF07883 Cupin domain Lferr_1806 PF01381 Helix-turn-helix Lferr_1807 PF00361 Proton-conducting membrane transporter Lferr_1808 PF00146 NADH dehydrogenase Lferr_1810 PF00361 Proton-conducting membrane transporter Lferr_1811 PF00374 Nickel-dependent hydrogenase Lferr_1811 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Lferr_1811 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Lferr_1812 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Lferr_1814 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Lferr_1814 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Lferr_1815 PF07728 AAA domain (dynein-related subfamily) Lferr_1815 PF08406 CbbQ/NirQ/NorQ C-terminal Lferr_1816 PF00092 von Willebrand factor type A domain Lferr_1817 PF03466 LysR substrate binding domain Lferr_1817 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_1818 PF03831 PhnA domain Lferr_1818 PF08274 PhnA Zinc-Ribbon Lferr_1826 PF00005 ABC transporter Lferr_1826 PF03412 Peptidase C39 family Lferr_1826 PF00664 ABC transporter transmembrane region Lferr_1828 PF14883 Hypothetical glycosyl hydrolase family 13 Lferr_1828 PF01522 Polysaccharide deacetylase Lferr_1830 PF00144 Beta-lactamase Lferr_1831 PF00293 NUDIX domain Lferr_1832 PF00293 NUDIX domain Lferr_1833 PF01479 S4 domain Lferr_1833 PF00849 RNA pseudouridylate synthase Lferr_1834 PF04371 Porphyromonas-type peptidyl-arginine deiminase Lferr_1835 PF01568 Molydopterin dinucleotide binding domain Lferr_1835 PF00384 Molybdopterin oxidoreductase Lferr_1835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Lferr_1836 PF13247 4Fe-4S dicluster domain Lferr_1841 PF00582 Universal stress protein family Lferr_1842 PF07690 Major Facilitator Superfamily Lferr_1844 PF01790 Prolipoprotein diacylglyceryl transferase Lferr_1845 PF13361 UvrD-like helicase C-terminal domain Lferr_1845 PF00580 UvrD/REP helicase N-terminal domain Lferr_1846 PF01649 Ribosomal protein S20 Lferr_1847 PF08402 TOBE domain Lferr_1847 PF00005 ABC transporter Lferr_1848 PF00528 Binding-protein-dependent transport system inner membrane component Lferr_1850 PF00149 Calcineurin-like phosphoesterase Lferr_1851 PF00271 Helicase conserved C-terminal domain Lferr_1851 PF00570 HRDC domain Lferr_1851 PF00270 DEAD/DEAH box helicase Lferr_1851 PF16124 RecQ zinc-binding Lferr_1851 PF09382 RQC domain Lferr_1852 PF01491 Frataxin-like domain Lferr_1856 PF03739 Lipopolysaccharide export system permease LptF/LptG Lferr_1857 PF00883 Cytosol aminopeptidase family, catalytic domain Lferr_1857 PF02789 Cytosol aminopeptidase family, N-terminal domain Lferr_1860 PF10458 Valyl tRNA synthetase tRNA binding arm Lferr_1860 PF00133 tRNA synthetases class I (I, L, M and V) Lferr_1860 PF08264 Anticodon-binding domain of tRNA Lferr_1861 PF06965 Na+/H+ antiporter 1 Lferr_1862 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Lferr_1862 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Lferr_1864 PF00440 Bacterial regulatory proteins, tetR family Lferr_1864 PF16925 Tetracyclin repressor-like, C-terminal domain Lferr_1865 PF01738 Dienelactone hydrolase family Lferr_1866 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Lferr_1868 PF05656 Protein of unknown function (DUF805) Lferr_1872 PF13419 Haloacid dehalogenase-like hydrolase Lferr_1873 PF00849 RNA pseudouridylate synthase Lferr_1873 PF01479 S4 domain Lferr_1874 PF12111 Polyribonucleotide phosphorylase C terminal Lferr_1874 PF10150 Ribonuclease E/G family Lferr_1874 PF00575 S1 RNA binding domain Lferr_1875 PF09190 DALR domain Lferr_1875 PF01406 tRNA synthetases class I (C) catalytic domain Lferr_1876 PF00749 tRNA synthetases class I (E and Q), catalytic domain Lferr_1877 PF00912 Transglycosylase Lferr_1877 PF17092 Penicillin-binding protein OB-like domain Lferr_1877 PF00905 Penicillin binding protein transpeptidase domain Lferr_1878 PF00723 Glycosyl hydrolases family 15 Lferr_1878 PF09137 Glucodextranase, domain N Lferr_1883 PF00072 Response regulator receiver domain Lferr_1883 PF00486 Transcriptional regulatory protein, C terminal Lferr_1884 PF02702 Osmosensitive K+ channel His kinase sensor domain Lferr_1884 PF00512 His Kinase A (phospho-acceptor) domain Lferr_1884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_1884 PF13492 GAF domain Lferr_1884 PF13493 Domain of unknown function (DUF4118) Lferr_1885 PF03814 Potassium-transporting ATPase A subunit Lferr_1887 PF02669 K+-transporting ATPase, c chain Lferr_1889 PF01472 PUA domain Lferr_1889 PF00696 Amino acid kinase family Lferr_1891 PF00543 Nitrogen regulatory protein P-II Lferr_1895 PF00999 Sodium/hydrogen exchanger family Lferr_1900 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Lferr_1900 PF07703 Alpha-2-macroglobulin bait region domain Lferr_1900 PF00207 Alpha-2-macroglobulin family Lferr_1900 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Lferr_1900 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Lferr_1900 PF01835 MG2 domain Lferr_1900 PF17962 Bacterial macroglobulin domain 6 Lferr_1901 PF06832 Penicillin-Binding Protein C-terminus Family Lferr_1901 PF00905 Penicillin binding protein transpeptidase domain Lferr_1901 PF00912 Transglycosylase Lferr_1905 PF01925 Sulfite exporter TauE/SafE Lferr_1907 PF02142 MGS-like domain Lferr_1907 PF01808 AICARFT/IMPCHase bienzyme Lferr_1908 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Lferr_1908 PF02843 Phosphoribosylglycinamide synthetase, C domain Lferr_1908 PF02844 Phosphoribosylglycinamide synthetase, N domain Lferr_1909 PF01300 Telomere recombination Lferr_1910 PF01218 Coproporphyrinogen III oxidase Lferr_1911 PF01180 Dihydroorotate dehydrogenase Lferr_1914 PF04185 Phosphoesterase family Lferr_1916 PF02472 Biopolymer transport protein ExbD/TolR Lferr_1917 PF01618 MotA/TolQ/ExbB proton channel family Lferr_1920 PF01618 MotA/TolQ/ExbB proton channel family Lferr_1924 PF00083 Sugar (and other) transporter Lferr_1925 PF06754 Phosphonate metabolism protein PhnG Lferr_1926 PF05845 Bacterial phosphonate metabolism protein (PhnH) Lferr_1927 PF05861 Bacterial phosphonate metabolism protein (PhnI) Lferr_1928 PF06007 Phosphonate metabolism protein PhnJ Lferr_1929 PF00005 ABC transporter Lferr_1930 PF00005 ABC transporter Lferr_1931 PF07969 Amidohydrolase family Lferr_1934 PF07702 UTRA domain Lferr_1934 PF00392 Bacterial regulatory proteins, gntR family Lferr_1940 PF05506 Domain of unknown function (DUF756) Lferr_1940 PF04185 Phosphoesterase family Lferr_1942 PF01618 MotA/TolQ/ExbB proton channel family Lferr_1945 PF00593 TonB dependent receptor Lferr_1945 PF07715 TonB-dependent Receptor Plug Domain Lferr_1953 PF00083 Sugar (and other) transporter Lferr_1955 PF00300 Histidine phosphatase superfamily (branch 1) Lferr_1957 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_1957 PF00512 His Kinase A (phospho-acceptor) domain Lferr_1957 PF00672 HAMP domain Lferr_1958 PF00072 Response regulator receiver domain Lferr_1958 PF00486 Transcriptional regulatory protein, C terminal Lferr_1959 PF00929 Exonuclease Lferr_1960 PF00296 Luciferase-like monooxygenase Lferr_1963 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Lferr_1963 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Lferr_1963 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Lferr_1963 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Lferr_1965 PF00689 Cation transporting ATPase, C-terminus Lferr_1965 PF00690 Cation transporter/ATPase, N-terminus Lferr_1966 PF01292 Prokaryotic cytochrome b561 Lferr_1968 PF07690 Major Facilitator Superfamily Lferr_1969 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_1969 PF03466 LysR substrate binding domain Lferr_1970 PF04542 Sigma-70 region 2 Lferr_1970 PF04539 Sigma-70 region 3 Lferr_1970 PF04546 Sigma-70, non-essential region Lferr_1970 PF04545 Sigma-70, region 4 Lferr_1970 PF00140 Sigma-70 factor, region 1.2 Lferr_1970 PF03979 Sigma-70 factor, region 1.1 Lferr_1971 PF08275 DNA primase catalytic core, N-terminal domain Lferr_1971 PF10410 DnaB-helicase binding domain of primase Lferr_1971 PF01807 CHC2 zinc finger Lferr_1971 PF08278 DNA primase DnaG DnaB-binding Lferr_1972 PF01713 Smr domain Lferr_1972 PF00488 MutS domain V Lferr_1974 PF01165 Ribosomal protein S21 Lferr_1975 PF04542 Sigma-70 region 2 Lferr_1975 PF04545 Sigma-70, region 4 Lferr_1975 PF04539 Sigma-70 region 3 Lferr_1975 PF00140 Sigma-70 factor, region 1.2 Lferr_1976 PF01725 Ham1 family Lferr_1977 PF03725 3' exoribonuclease family, domain 2 Lferr_1977 PF01138 3' exoribonuclease family, domain 1 Lferr_1980 PF06969 HemN C-terminal domain Lferr_1980 PF04055 Radical SAM superfamily Lferr_1982 PF01479 S4 domain Lferr_1982 PF00849 RNA pseudouridylate synthase Lferr_1984 PF07690 Major Facilitator Superfamily Lferr_1985 PF00768 D-alanyl-D-alanine carboxypeptidase Lferr_1985 PF07943 Penicillin-binding protein 5, C-terminal domain Lferr_1988 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Lferr_1988 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Lferr_1988 PF02769 AIR synthase related protein, C-terminal domain Lferr_1989 PF01259 SAICAR synthetase Lferr_1990 PF00206 Lyase Lferr_1990 PF10397 Adenylosuccinate lyase C-terminus Lferr_1992 PF00701 Dihydrodipicolinate synthetase family Lferr_1993 PF03006 Haemolysin-III related Lferr_1994 PF11741 AMIN domain Lferr_1994 PF01520 N-acetylmuramoyl-L-alanine amidase Lferr_1995 PF00085 Thioredoxin Lferr_1996 PF00462 Glutaredoxin Lferr_1997 PF00581 Rhodanese-like domain Lferr_1999 PF00873 AcrB/AcrD/AcrF family Lferr_2000 PF13533 Biotin-lipoyl like Lferr_2002 PF01022 Bacterial regulatory protein, arsR family Lferr_2003 PF02384 N-6 DNA Methylase Lferr_2003 PF12161 HsdM N-terminal domain Lferr_2012 PF12008 Type I restriction and modification enzyme - subunit R C terminal Lferr_2012 PF18766 SWI2/SNF2 ATPase Lferr_2012 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Lferr_2013 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Lferr_2016 PF00899 ThiF family Lferr_2018 PF01494 FAD binding domain Lferr_2019 PF01494 FAD binding domain Lferr_2020 PF04380 Membrane fusogenic activity Lferr_2021 PF01078 Magnesium chelatase, subunit ChlI Lferr_2021 PF13335 Magnesium chelatase, subunit ChlI C-terminal Lferr_2027 PF01695 IstB-like ATP binding protein Lferr_2028 PF00665 Integrase core domain Lferr_2030 PF00589 Phage integrase family Lferr_2030 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_2031 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_2031 PF00589 Phage integrase family Lferr_2040 PF13673 Acetyltransferase (GNAT) domain Lferr_2042 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Lferr_2043 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Lferr_2043 PF00391 PEP-utilising enzyme, mobile domain Lferr_2044 PF01695 IstB-like ATP binding protein Lferr_2050 PF01545 Cation efflux family Lferr_2051 PF13411 MerR HTH family regulatory protein Lferr_2052 PF08241 Methyltransferase domain Lferr_2053 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Lferr_2053 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Lferr_2060 PF00873 AcrB/AcrD/AcrF family Lferr_2074 PF00403 Heavy-metal-associated domain Lferr_2076 PF00034 Cytochrome c Lferr_2078 PF00999 Sodium/hydrogen exchanger family Lferr_2082 PF13520 Amino acid permease Lferr_2086 PF00543 Nitrogen regulatory protein P-II Lferr_2088 PF01472 PUA domain Lferr_2088 PF00696 Amino acid kinase family Lferr_2089 PF08443 RimK-like ATP-grasp domain Lferr_2089 PF02080 TrkA-C domain Lferr_2089 PF18030 RimK PreATP-grasp domain Lferr_2093 PF13817 IS66 C-terminal element Lferr_2093 PF03050 Transposase IS66 family Lferr_2093 PF13005 zinc-finger binding domain of transposase IS66 Lferr_2093 PF13007 Transposase C of IS166 homeodomain Lferr_2100 PF02669 K+-transporting ATPase, c chain Lferr_2102 PF03814 Potassium-transporting ATPase A subunit Lferr_2104 PF03814 Potassium-transporting ATPase A subunit Lferr_2106 PF03203 MerC mercury resistance protein Lferr_2107 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lferr_2107 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_2107 PF00403 Heavy-metal-associated domain Lferr_2108 PF09137 Glucodextranase, domain N Lferr_2108 PF00723 Glycosyl hydrolases family 15 Lferr_2109 PF13411 MerR HTH family regulatory protein Lferr_2133 PF02082 Transcriptional regulator Lferr_2136 PF00665 Integrase core domain Lferr_2140 PF13411 MerR HTH family regulatory protein Lferr_2144 PF00009 Elongation factor Tu GTP binding domain Lferr_2144 PF03144 Elongation factor Tu domain 2 Lferr_2144 PF16658 Class II release factor RF3, C-terminal domain Lferr_2146 PF00814 Glycoprotease family Lferr_2147 PF04851 Type III restriction enzyme, res subunit Lferr_2147 PF13307 Helicase C-terminal domain Lferr_2149 PF00877 NlpC/P60 family Lferr_2152 PF02421 Ferrous iron transport protein B Lferr_2152 PF17910 FeoB cytosolic helical domain Lferr_2152 PF07664 Ferrous iron transport protein B C terminus Lferr_2152 PF07670 Nucleoside recognition Lferr_2154 PF00795 Carbon-nitrogen hydrolase Lferr_2155 PF07722 Peptidase C26 Lferr_2156 PF09335 SNARE associated Golgi protein Lferr_2162 PF00850 Histone deacetylase domain Lferr_2164 PF08406 CbbQ/NirQ/NorQ C-terminal Lferr_2164 PF07728 AAA domain (dynein-related subfamily) Lferr_2173 PF03099 Biotin/lipoate A/B protein ligase family Lferr_2175 PF01597 Glycine cleavage H-protein Lferr_2177 PF01597 Glycine cleavage H-protein Lferr_2178 PF02754 Cysteine-rich domain Lferr_2183 PF01593 Flavin containing amine oxidoreductase Lferr_2186 PF13686 DsrE/DsrF/DrsH-like family Lferr_2187 PF01206 Sulfurtransferase TusA Lferr_2188 PF00581 Rhodanese-like domain Lferr_2189 PF06463 Molybdenum Cofactor Synthesis C Lferr_2189 PF04055 Radical SAM superfamily Lferr_2191 PF01967 MoaC family Lferr_2193 PF04085 rod shape-determining protein MreC Lferr_2195 PF00905 Penicillin binding protein transpeptidase domain Lferr_2195 PF03717 Penicillin-binding Protein dimerisation domain Lferr_2196 PF01098 Cell cycle protein Lferr_2197 PF00768 D-alanyl-D-alanine carboxypeptidase Lferr_2197 PF07943 Penicillin-binding protein 5, C-terminal domain Lferr_2199 PF03099 Biotin/lipoate A/B protein ligase family Lferr_2200 PF04055 Radical SAM superfamily Lferr_2200 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Lferr_2209 PF02091 Glycyl-tRNA synthetase alpha subunit Lferr_2210 PF02092 Glycyl-tRNA synthetase beta subunit Lferr_2213 PF08443 RimK-like ATP-grasp domain Lferr_2213 PF18030 RimK PreATP-grasp domain Lferr_2217 PF02677 Epoxyqueuosine reductase QueH Lferr_2219 PF01510 N-acetylmuramoyl-L-alanine amidase Lferr_2223 PF00043 Glutathione S-transferase, C-terminal domain Lferr_2223 PF02798 Glutathione S-transferase, N-terminal domain Lferr_2224 PF01638 HxlR-like helix-turn-helix Lferr_2225 PF08502 LeuA allosteric (dimerisation) domain Lferr_2225 PF00682 HMGL-like Lferr_2226 PF01590 GAF domain Lferr_2226 PF00158 Sigma-54 interaction domain Lferr_2226 PF02954 Bacterial regulatory protein, Fis family Lferr_2233 PF00005 ABC transporter Lferr_2233 PF13732 Domain of unknown function (DUF4162) Lferr_2237 PF00216 Bacterial DNA-binding protein Lferr_2238 PF03483 B3/4 domain Lferr_2238 PF01588 Putative tRNA binding domain Lferr_2238 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Lferr_2238 PF03147 Ferredoxin-fold anticodon binding domain Lferr_2238 PF03484 tRNA synthetase B5 domain Lferr_2239 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Lferr_2239 PF01409 tRNA synthetases class II core domain (F) Lferr_2240 PF00453 Ribosomal protein L20 Lferr_2241 PF01632 Ribosomal protein L35 Lferr_2242 PF00707 Translation initiation factor IF-3, C-terminal domain Lferr_2242 PF05198 Translation initiation factor IF-3, N-terminal domain Lferr_2243 PF03129 Anticodon binding domain Lferr_2243 PF02824 TGS domain Lferr_2243 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Lferr_2243 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Lferr_2244 PF00361 Proton-conducting membrane transporter Lferr_2245 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Lferr_2245 PF00361 Proton-conducting membrane transporter Lferr_2246 PF00361 Proton-conducting membrane transporter Lferr_2246 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Lferr_2247 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Lferr_2248 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Lferr_2249 PF12838 4Fe-4S dicluster domain Lferr_2250 PF00146 NADH dehydrogenase Lferr_2251 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Lferr_2251 PF00384 Molybdopterin oxidoreductase Lferr_2251 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Lferr_2252 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Lferr_2252 PF10531 SLBB domain Lferr_2252 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Lferr_2254 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Lferr_2255 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Lferr_2256 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Lferr_2257 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Lferr_2258 PF03840 Preprotein translocase SecG subunit Lferr_2259 PF00121 Triosephosphate isomerase Lferr_2260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Lferr_2260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Lferr_2260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Lferr_2260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Lferr_2261 PF00809 Pterin binding enzyme Lferr_2262 PF00004 ATPase family associated with various cellular activities (AAA) Lferr_2262 PF17862 AAA+ lid domain Lferr_2262 PF01434 Peptidase family M41 Lferr_2262 PF06480 FtsH Extracellular Lferr_2263 PF01523 Putative modulator of DNA gyrase Lferr_2264 PF00317 Ribonucleotide reductase, all-alpha domain Lferr_2264 PF02867 Ribonucleotide reductase, barrel domain Lferr_2264 PF03477 ATP cone domain Lferr_2265 PF00268 Ribonucleotide reductase, small chain Lferr_2268 PF07690 Major Facilitator Superfamily Lferr_2280 PF11799 impB/mucB/samB family C-terminal domain Lferr_2280 PF00817 impB/mucB/samB family Lferr_2281 PF01850 PIN domain Lferr_2286 PF00692 dUTPase Lferr_2287 PF10609 NUBPL iron-transfer P-loop NTPase Lferr_2289 PF05173 Dihydrodipicolinate reductase, C-terminus Lferr_2289 PF01113 Dihydrodipicolinate reductase, N-terminus Lferr_2290 PF00226 DnaJ domain Lferr_2290 PF01556 DnaJ C terminal domain Lferr_2290 PF00684 DnaJ central domain Lferr_2291 PF00012 Hsp70 protein Lferr_2292 PF01025 GrpE Lferr_2293 PF01628 HrcA protein C terminal domain Lferr_2294 PF00471 Ribosomal protein L33 Lferr_2295 PF00830 Ribosomal L28 family Lferr_2296 PF01588 Putative tRNA binding domain Lferr_2296 PF09334 tRNA synthetases class I (M) Lferr_2297 PF00793 DAHP synthetase I family Lferr_2297 PF18152 DAHP synthase ferredoxin-like domain Lferr_2298 PF00206 Lyase Lferr_2298 PF10415 Fumarase C C-terminus Lferr_2299 PF01432 Peptidase family M3 Lferr_2299 PF08439 Oligopeptidase F Lferr_2303 PF08323 Starch synthase catalytic domain Lferr_2303 PF00534 Glycosyl transferases group 1 Lferr_2304 PF10996 Beta-Casp domain Lferr_2304 PF00753 Metallo-beta-lactamase superfamily Lferr_2304 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Lferr_2306 PF00730 HhH-GPD superfamily base excision DNA repair protein Lferr_2306 PF00633 Helix-hairpin-helix motif Lferr_2306 PF10576 Iron-sulfur binding domain of endonuclease III Lferr_2308 PF05662 Coiled stalk of trimeric autotransporter adhesin Lferr_2308 PF05658 Head domain of trimeric autotransporter adhesin Lferr_2308 PF13018 Extended Signal Peptide of Type V secretion system Lferr_2308 PF03895 YadA-like membrane anchor domain Lferr_2309 PF00691 OmpA family Lferr_2309 PF04972 BON domain Lferr_2315 PF13533 Biotin-lipoyl like Lferr_2316 PF00005 ABC transporter Lferr_2316 PF03412 Peptidase C39 family Lferr_2316 PF00664 ABC transporter transmembrane region Lferr_2318 PF00158 Sigma-54 interaction domain Lferr_2318 PF02954 Bacterial regulatory protein, Fis family Lferr_2318 PF00072 Response regulator receiver domain Lferr_2324 PF00437 Type II/IV secretion system protein Lferr_2326 PF04972 BON domain Lferr_2326 PF00263 Bacterial type II and III secretion system protein Lferr_2326 PF13629 Pilus formation protein N terminal region Lferr_2338 PF13181 Tetratricopeptide repeat Lferr_2349 PF00034 Cytochrome c Lferr_2351 PF00355 Rieske [2Fe-2S] domain Lferr_2351 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Lferr_2352 PF00032 Cytochrome b(C-terminal)/b6/petD Lferr_2352 PF00033 Cytochrome b/b6/petB Lferr_2353 PF02167 Cytochrome C1 family Lferr_2357 PF01728 FtsJ-like methyltransferase Lferr_2358 PF01985 CRS1 / YhbY (CRM) domain Lferr_2359 PF04379 ApaG domain Lferr_2360 PF01209 ubiE/COQ5 methyltransferase family Lferr_2363 PF01678 Diaminopimelate epimerase Lferr_2366 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_2366 PF00589 Phage integrase family Lferr_2367 PF00227 Proteasome subunit Lferr_2368 PF00004 ATPase family associated with various cellular activities (AAA) Lferr_2368 PF07724 AAA domain (Cdc48 subfamily) Lferr_2370 PF04542 Sigma-70 region 2 Lferr_2370 PF00140 Sigma-70 factor, region 1.2 Lferr_2370 PF04545 Sigma-70, region 4 Lferr_2371 PF18075 FtsX extracellular domain Lferr_2372 PF00005 ABC transporter Lferr_2373 PF00448 SRP54-type protein, GTPase domain Lferr_2373 PF02881 SRP54-type protein, helical bundle domain Lferr_2375 PF01467 Cytidylyltransferase-like Lferr_2376 PF00037 4Fe-4S binding domain Lferr_2377 PF00350 Dynamin family Lferr_2378 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Lferr_2378 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Lferr_2378 PF06827 Zinc finger found in FPG and IleRS Lferr_2379 PF17827 PrmC N-terminal domain Lferr_2379 PF05175 Methyltransferase small domain Lferr_2380 PF03462 PCRF domain Lferr_2380 PF00472 RF-1 domain Lferr_2381 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Lferr_2381 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Lferr_2381 PF01488 Shikimate / quinate 5-dehydrogenase Lferr_2383 PF03550 Outer membrane lipoprotein LolB Lferr_2384 PF08544 GHMP kinases C terminal Lferr_2384 PF00288 GHMP kinases N terminal domain Lferr_2385 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Lferr_2385 PF14572 Phosphoribosyl synthetase-associated domain Lferr_2391 PF01850 PIN domain Lferr_2398 PF01925 Sulfite exporter TauE/SafE Lferr_2400 PF01695 IstB-like ATP binding protein Lferr_2401 PF00665 Integrase core domain Lferr_2411 PF01906 Putative heavy-metal-binding Lferr_2413 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Lferr_2413 PF11867 Domain of unknown function (DUF3387) Lferr_2413 PF18766 SWI2/SNF2 ATPase Lferr_2415 PF01420 Type I restriction modification DNA specificity domain Lferr_2418 PF02384 N-6 DNA Methylase Lferr_2422 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Lferr_2422 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Lferr_2423 PF12833 Helix-turn-helix domain Lferr_2423 PF00730 HhH-GPD superfamily base excision DNA repair protein Lferr_2423 PF02805 Metal binding domain of Ada Lferr_2423 PF06029 AlkA N-terminal domain Lferr_2424 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Lferr_2428 PF00893 Small Multidrug Resistance protein Lferr_2429 PF03358 NADPH-dependent FMN reductase Lferr_2438 PF05195 Aminopeptidase P, N-terminal domain Lferr_2438 PF00557 Metallopeptidase family M24 Lferr_2440 PF18073 Rubredoxin metal binding domain Lferr_2441 PF00842 Alanine racemase, C-terminal domain Lferr_2441 PF01168 Alanine racemase, N-terminal domain Lferr_2442 PF03796 DnaB-like helicase C terminal domain Lferr_2442 PF00772 DnaB-like helicase N terminal domain Lferr_2443 PF01281 Ribosomal protein L9, N-terminal domain Lferr_2443 PF03948 Ribosomal protein L9, C-terminal domain Lferr_2445 PF01084 Ribosomal protein S18 Lferr_2446 PF01250 Ribosomal protein S6 Lferr_2447 PF00933 Glycosyl hydrolase family 3 N terminal domain Lferr_2448 PF13520 Amino acid permease Lferr_2450 PF01938 TRAM domain Lferr_2450 PF05958 tRNA (Uracil-5-)-methyltransferase Lferr_2454 PF00291 Pyridoxal-phosphate dependent enzyme Lferr_2455 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Lferr_2456 PF01145 SPFH domain / Band 7 family Lferr_2458 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Lferr_2458 PF02806 Alpha amylase, C-terminal all-beta domain Lferr_2458 PF00128 Alpha amylase, catalytic domain Lferr_2459 PF00483 Nucleotidyl transferase Lferr_2461 PF03065 Glycosyl hydrolase family 57 Lferr_2461 PF09095 Domain of unknown function (DUF1926) Lferr_2461 PF09094 Domain of unknown function (DUF1925) Lferr_2462 PF00480 ROK family Lferr_2463 PF01177 Asp/Glu/Hydantoin racemase Lferr_2464 PF04286 Protein of unknown function (DUF445) Lferr_2466 PF00436 Single-strand binding protein family Lferr_2467 PF17760 UvrA interaction domain Lferr_2467 PF17755 UvrA DNA-binding domain Lferr_2469 PF00085 Thioredoxin Lferr_2470 PF17820 PDZ domain Lferr_2470 PF13180 PDZ domain Lferr_2471 PF00589 Phage integrase family Lferr_2471 PF02899 Phage integrase, N-terminal SAM-like domain Lferr_2473 PF01245 Ribosomal protein L19 Lferr_2474 PF01746 tRNA (Guanine-1)-methyltransferase Lferr_2475 PF05239 PRC-barrel domain Lferr_2475 PF01782 RimM N-terminal domain Lferr_2476 PF00886 Ribosomal protein S16 Lferr_2477 PF02978 Signal peptide binding domain Lferr_2477 PF02881 SRP54-type protein, helical bundle domain Lferr_2477 PF00448 SRP54-type protein, GTPase domain Lferr_2478 PF03358 NADPH-dependent FMN reductase Lferr_2479 PF02040 Arsenical pump membrane protein Lferr_2481 PF01451 Low molecular weight phosphotyrosine protein phosphatase Lferr_2482 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Lferr_2483 PF00005 ABC transporter Lferr_2490 PF01597 Glycine cleavage H-protein Lferr_2494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Lferr_2494 PF03466 LysR substrate binding domain Lferr_2495 PF13686 DsrE/DsrF/DrsH-like family Lferr_2499 PF00092 von Willebrand factor type A domain Lferr_2502 PF03167 Uracil DNA glycosylase superfamily Lferr_2506 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Lferr_2509 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Lferr_2515 PF00905 Penicillin binding protein transpeptidase domain Lferr_2515 PF03717 Penicillin-binding Protein dimerisation domain Lferr_2517 PF00348 Polyprenyl synthetase Lferr_2519 PF00072 Response regulator receiver domain Lferr_2519 PF02954 Bacterial regulatory protein, Fis family Lferr_2519 PF00158 Sigma-54 interaction domain Lferr_2520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_2520 PF00512 His Kinase A (phospho-acceptor) domain Lferr_2520 PF00989 PAS fold Lferr_2522 PF14403 Circularly permuted ATP-grasp type 2 Lferr_2523 PF14403 Circularly permuted ATP-grasp type 2 Lferr_2523 PF04168 A predicted alpha-helical domain with a conserved ER motif. Lferr_2525 PF08298 PrkA AAA domain Lferr_2525 PF06798 PrkA serine protein kinase C-terminal domain Lferr_2526 PF00909 Ammonium Transporter Family Lferr_2527 PF04285 Protein of unknown function (DUF444) Lferr_2528 PF04293 SpoVR like protein Lferr_2530 PF00543 Nitrogen regulatory protein P-II Lferr_2531 PF00909 Ammonium Transporter Family Lferr_2532 PF00117 Glutamine amidotransferase class-I Lferr_2532 PF00958 GMP synthase C terminal domain Lferr_2535 PF05036 Sporulation related domain Lferr_2535 PF03330 Lytic transglycolase Lferr_2537 PF07885 Ion channel Lferr_2537 PF02254 TrkA-N domain Lferr_2538 PF07943 Penicillin-binding protein 5, C-terminal domain Lferr_2538 PF00768 D-alanyl-D-alanine carboxypeptidase Lferr_2539 PF00342 Phosphoglucose isomerase Lferr_2541 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Lferr_2545 PF06736 Protein of unknown function (DUF1211) Lferr_2546 PF17946 RecC C-terminal domain Lferr_2547 PF12705 PD-(D/E)XK nuclease superfamily Lferr_2547 PF00580 UvrD/REP helicase N-terminal domain Lferr_2547 PF13361 UvrD-like helicase C-terminal domain Lferr_2548 PF13538 UvrD-like helicase C-terminal domain Lferr_2556 PF00690 Cation transporter/ATPase, N-terminus Lferr_2556 PF00689 Cation transporting ATPase, C-terminus Lferr_2558 PF01641 SelR domain Lferr_2559 PF01625 Peptide methionine sulfoxide reductase Lferr_2561 PF01467 Cytidylyltransferase-like Lferr_2563 PF02590 Predicted SPOUT methyltransferase Lferr_2566 PF02545 Maf-like protein Lferr_2567 PF10150 Ribonuclease E/G family Lferr_2567 PF00575 S1 RNA binding domain Lferr_2568 PF00158 Sigma-54 interaction domain Lferr_2568 PF00072 Response regulator receiver domain Lferr_2570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_2570 PF00512 His Kinase A (phospho-acceptor) domain Lferr_2572 PF04362 Bacterial Fe(2+) trafficking Lferr_2573 PF01050 Mannose-6-phosphate isomerase Lferr_2573 PF00483 Nucleotidyl transferase Lferr_2575 PF01061 ABC-2 type transporter Lferr_2576 PF00005 ABC transporter Lferr_2579 PF00534 Glycosyl transferases group 1 Lferr_2579 PF13439 Glycosyltransferase Family 4 Lferr_2586 PF00009 Elongation factor Tu GTP binding domain Lferr_2587 PF00459 Inositol monophosphatase family Lferr_2589 PF02563 Polysaccharide biosynthesis/export protein Lferr_2590 PF00534 Glycosyl transferases group 1 Lferr_2590 PF13439 Glycosyltransferase Family 4 Lferr_2592 PF16363 GDP-mannose 4,6 dehydratase Lferr_2596 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Lferr_2598 PF00664 ABC transporter transmembrane region Lferr_2598 PF00005 ABC transporter Lferr_2599 PF13673 Acetyltransferase (GNAT) domain Lferr_2601 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Lferr_2601 PF00005 ABC transporter Lferr_2602 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Lferr_2602 PF00005 ABC transporter Lferr_2603 PF12911 N-terminal TM domain of oligopeptide transport permease C Lferr_2603 PF00528 Binding-protein-dependent transport system inner membrane component Lferr_2604 PF00528 Binding-protein-dependent transport system inner membrane component Lferr_2609 PF01914 MarC family integral membrane protein Lferr_2613 PF01618 MotA/TolQ/ExbB proton channel family Lferr_2614 PF02472 Biopolymer transport protein ExbD/TolR Lferr_2617 PF00698 Acyl transferase domain Lferr_2617 PF08240 Alcohol dehydrogenase GroES-like domain Lferr_2617 PF16197 Ketoacyl-synthetase C-terminal extension Lferr_2617 PF00107 Zinc-binding dehydrogenase Lferr_2617 PF08659 KR domain Lferr_2617 PF00550 Phosphopantetheine attachment site Lferr_2617 PF14765 Polyketide synthase dehydratase Lferr_2617 PF02801 Beta-ketoacyl synthase, C-terminal domain Lferr_2617 PF00109 Beta-ketoacyl synthase, N-terminal domain Lferr_2618 PF00155 Aminotransferase class I and II Lferr_2619 PF05159 Capsule polysaccharide biosynthesis protein Lferr_2620 PF05159 Capsule polysaccharide biosynthesis protein Lferr_2621 PF00106 short chain dehydrogenase Lferr_2623 PF00730 HhH-GPD superfamily base excision DNA repair protein Lferr_2623 PF10576 Iron-sulfur binding domain of endonuclease III Lferr_2623 PF14815 NUDIX domain Lferr_2623 PF00633 Helix-hairpin-helix motif Lferr_2625 PF02896 PEP-utilising enzyme, TIM barrel domain Lferr_2625 PF00391 PEP-utilising enzyme, mobile domain Lferr_2625 PF05524 PEP-utilising enzyme, N-terminal Lferr_2626 PF00381 PTS HPr component phosphorylation site Lferr_2629 PF03668 P-loop ATPase protein family Lferr_2630 PF07475 HPr Serine kinase C-terminal domain Lferr_2630 PF02603 HPr Serine kinase N terminus Lferr_2631 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Lferr_2631 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Lferr_2632 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Lferr_2633 PF00309 Sigma-54 factor, Activator interacting domain (AID) Lferr_2633 PF04963 Sigma-54 factor, core binding domain Lferr_2633 PF04552 Sigma-54, DNA binding domain Lferr_2634 PF00005 ABC transporter Lferr_2635 PF03968 OstA-like protein Lferr_2638 PF01380 SIS domain Lferr_2638 PF00571 CBS domain Lferr_2641 PF00483 Nucleotidyl transferase Lferr_2642 PF01636 Phosphotransferase enzyme family Lferr_2643 PF04453 LPS transport system D Lferr_2643 PF03968 OstA-like protein Lferr_2644 PF09312 SurA N-terminal domain Lferr_2644 PF00639 PPIC-type PPIASE domain Lferr_2645 PF01061 ABC-2 type transporter Lferr_2646 PF01722 BolA-like protein Lferr_2647 PF00462 Glutaredoxin Lferr_2648 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Lferr_2649 PF01634 ATP phosphoribosyltransferase Lferr_2650 PF00815 Histidinol dehydrogenase Lferr_2651 PF00155 Aminotransferase class I and II Lferr_2652 PF00475 Imidazoleglycerol-phosphate dehydratase Lferr_2653 PF00117 Glutamine amidotransferase class-I Lferr_2654 PF00977 Histidine biosynthesis protein Lferr_2655 PF00977 Histidine biosynthesis protein Lferr_2656 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Lferr_2656 PF01502 Phosphoribosyl-AMP cyclohydrolase Lferr_2657 PF02416 mttA/Hcf106 family Lferr_2658 PF02416 mttA/Hcf106 family Lferr_2659 PF00902 Sec-independent protein translocase protein (TatC) Lferr_2660 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain Lferr_2660 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain Lferr_2661 PF00101 Ribulose bisphosphate carboxylase, small chain Lferr_2662 PF07728 AAA domain (dynein-related subfamily) Lferr_2662 PF08406 CbbQ/NirQ/NorQ C-terminal Lferr_2664 PF00563 EAL domain Lferr_2664 PF03707 Bacterial signalling protein N terminal repeat Lferr_2664 PF00990 Diguanylate cyclase, GGDEF domain Lferr_2665 PF01979 Amidohydrolase family Lferr_2666 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Lferr_2666 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Lferr_2667 PF00156 Phosphoribosyl transferase domain Lferr_2668 PF03652 Holliday junction resolvase Lferr_2669 PF02622 Uncharacterized ACR, COG1678 Lferr_2670 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Lferr_2670 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Lferr_2672 PF00285 Citrate synthase, C-terminal domain Lferr_2673 PF01521 Iron-sulphur cluster biosynthesis Lferr_2674 PF07992 Pyridine nucleotide-disulphide oxidoreductase Lferr_2674 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Lferr_2675 PF02779 Transketolase, pyrimidine binding domain Lferr_2675 PF02780 Transketolase, C-terminal domain Lferr_2675 PF00364 Biotin-requiring enzyme Lferr_2676 PF00676 Dehydrogenase E1 component Lferr_2679 PF01118 Semialdehyde dehydrogenase, NAD binding domain Lferr_2679 PF02774 Semialdehyde dehydrogenase, dimerisation domain Lferr_2680 PF00380 Ribosomal protein S9/S16 Lferr_2681 PF00572 Ribosomal protein L13 Lferr_2686 PF00579 tRNA synthetases class I (W and Y) Lferr_2687 PF00690 Cation transporter/ATPase, N-terminus Lferr_2687 PF00689 Cation transporting ATPase, C-terminus Lferr_2688 PF02261 Aspartate decarboxylase Lferr_2690 PF01926 50S ribosome-binding GTPase Lferr_2691 PF02254 TrkA-N domain Lferr_2691 PF07885 Ion channel Lferr_2692 PF00476 DNA polymerase family A Lferr_2692 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Lferr_2692 PF01612 3'-5' exonuclease Lferr_2692 PF01367 5'-3' exonuclease, C-terminal SAM fold Lferr_2693 PF03641 Possible lysine decarboxylase Lferr_2695 PF01636 Phosphotransferase enzyme family Lferr_2699 PF00580 UvrD/REP helicase N-terminal domain Lferr_2699 PF13361 UvrD-like helicase C-terminal domain Lferr_2700 PF00226 DnaJ domain Lferr_2700 PF01556 DnaJ C terminal domain Lferr_2702 PF00156 Phosphoribosyl transferase domain Lferr_2702 PF05139 Erythromycin esterase Lferr_2703 PF02811 PHP domain Lferr_2703 PF14791 DNA polymerase beta thumb Lferr_2703 PF14716 Helix-hairpin-helix domain Lferr_2705 PF00034 Cytochrome c Lferr_2706 PF00106 short chain dehydrogenase Lferr_2707 PF00355 Rieske [2Fe-2S] domain Lferr_2707 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Lferr_2708 PF00033 Cytochrome b/b6/petB Lferr_2708 PF00032 Cytochrome b(C-terminal)/b6/petD Lferr_2710 PF05140 ResB-like family Lferr_2711 PF01578 Cytochrome C assembly protein Lferr_2720 PF00258 Flavodoxin Lferr_2720 PF00667 FAD binding domain Lferr_2720 PF00175 Oxidoreductase NAD-binding domain Lferr_2721 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Lferr_2721 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Lferr_2722 PF01507 Phosphoadenosine phosphosulfate reductase family Lferr_2723 PF01507 Phosphoadenosine phosphosulfate reductase family Lferr_2724 PF00009 Elongation factor Tu GTP binding domain Lferr_2725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Lferr_2729 PF02416 mttA/Hcf106 family Lferr_2735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_2735 PF00512 His Kinase A (phospho-acceptor) domain Lferr_2736 PF00072 Response regulator receiver domain Lferr_2739 PF02082 Transcriptional regulator Lferr_2740 PF07690 Major Facilitator Superfamily Lferr_2741 PF01040 UbiA prenyltransferase family Lferr_2743 PF00127 Copper binding proteins, plastocyanin/azurin family Lferr_2747 PF00115 Cytochrome C and Quinol oxidase polypeptide I Lferr_2748 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Lferr_2750 PF00034 Cytochrome c Lferr_2755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_2755 PF00183 Hsp90 protein Lferr_2757 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Lferr_2757 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lferr_2760 PF00005 ABC transporter Lferr_2767 PF00106 short chain dehydrogenase Lferr_2768 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Lferr_2775 PF01695 IstB-like ATP binding protein Lferr_2776 PF00665 Integrase core domain Lferr_2778 PF05598 Transposase domain (DUF772) Lferr_2778 PF01609 Transposase DDE domain Lferr_2781 PF01548 Transposase Lferr_2781 PF02371 Transposase IS116/IS110/IS902 family Lferr_2785 PF14338 Mrr N-terminal domain Lferr_2785 PF04471 Restriction endonuclease Lferr_2793 PF01555 DNA methylase Lferr_2795 PF13749 Putative ATP-dependent DNA helicase recG C-terminal Lferr_2795 PF17191 RecG wedge domain Lferr_2795 PF00270 DEAD/DEAH box helicase Lferr_2801 PF11426 Tn7 transposition regulator TnsC Lferr_2801 PF13401 AAA domain Lferr_2802 PF00665 Integrase core domain Lferr_2803 PF08721 TnsA endonuclease C terminal Lferr_2803 PF08722 TnsA endonuclease N terminal Lferr_2804 PF01380 SIS domain Lferr_2805 PF14602 Hexapeptide repeat of succinyl-transferase Lferr_2805 PF12804 MobA-like NTP transferase domain Lferr_2805 PF00132 Bacterial transferase hexapeptide (six repeats) Lferr_2806 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Lferr_2806 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Lferr_2807 PF02874 ATP synthase alpha/beta family, beta-barrel domain Lferr_2807 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Lferr_2808 PF00231 ATP synthase Lferr_2809 PF02874 ATP synthase alpha/beta family, beta-barrel domain Lferr_2809 PF00306 ATP synthase alpha/beta chain, C terminal domain Lferr_2809 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Lferr_2810 PF00213 ATP synthase delta (OSCP) subunit Lferr_2811 PF00430 ATP synthase B/B' CF(0) Lferr_2812 PF00137 ATP synthase subunit C Lferr_2813 PF00119 ATP synthase A chain Lferr_2815 PF02195 ParB-like nuclease domain Lferr_2815 PF17762 HTH domain found in ParB protein Lferr_2816 PF13614 AAA domain Lferr_2817 PF02527 rRNA small subunit methyltransferase G Lferr_2818 PF13932 GidA associated domain Lferr_2818 PF01134 Glucose inhibited division protein A Lferr_2821 PF00994 Probable molybdopterin binding domain Lferr_2827 PF03358 NADPH-dependent FMN reductase Lferr_2828 PF05726 Pirin C-terminal cupin domain Lferr_2828 PF02678 Pirin Lferr_2836 PF01061 ABC-2 type transporter Lferr_2837 PF00005 ABC transporter Lferr_2838 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Lferr_2840 PF03232 Ubiquinone biosynthesis protein COQ7 Lferr_2841 PF02082 Transcriptional regulator Lferr_2843 PF00218 Indole-3-glycerol phosphate synthase Lferr_2844 PF00591 Glycosyl transferase family, a/b domain Lferr_2844 PF02885 Glycosyl transferase family, helical bundle domain Lferr_2845 PF00117 Glutamine amidotransferase class-I Lferr_2846 PF00425 chorismate binding enzyme Lferr_2846 PF04715 Anthranilate synthase component I, N terminal region Lferr_2847 PF13419 Haloacid dehalogenase-like hydrolase Lferr_2848 PF00834 Ribulose-phosphate 3 epimerase family Lferr_2849 PF01116 Fructose-bisphosphate aldolase class-II Lferr_2850 PF02887 Pyruvate kinase, alpha/beta domain Lferr_2850 PF00224 Pyruvate kinase, barrel domain Lferr_2851 PF00162 Phosphoglycerate kinase Lferr_2852 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Lferr_2852 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Lferr_2853 PF00456 Transketolase, thiamine diphosphate binding domain Lferr_2853 PF02780 Transketolase, C-terminal domain Lferr_2853 PF02779 Transketolase, pyrimidine binding domain Lferr_2854 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Lferr_2855 PF00459 Inositol monophosphatase family Lferr_2857 PF04452 RNA methyltransferase Lferr_2858 PF02401 LytB protein Lferr_2859 PF02646 RmuC family Lferr_2860 PF01741 Large-conductance mechanosensitive channel, MscL Lferr_2862 PF00873 AcrB/AcrD/AcrF family Lferr_2863 PF13533 Biotin-lipoyl like Lferr_2865 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Lferr_2872 PF00486 Transcriptional regulatory protein, C terminal Lferr_2872 PF00072 Response regulator receiver domain Lferr_2873 PF00512 His Kinase A (phospho-acceptor) domain Lferr_2873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lferr_2873 PF00672 HAMP domain Lferr_2875 PF00206 Lyase Lferr_2875 PF14698 Argininosuccinate lyase C-terminal Lferr_2877 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Lferr_2877 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Lferr_2878 PF01161 Phosphatidylethanolamine-binding protein Lferr_2881 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Lferr_2881 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Lferr_2883 PF02754 Cysteine-rich domain Lferr_2883 PF02665 Nitrate reductase gamma subunit Lferr_2883 PF13183 4Fe-4S dicluster domain Lferr_2884 PF00374 Nickel-dependent hydrogenase Lferr_2885 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lferr_2886 PF02492 CobW/HypB/UreG, nucleotide-binding domain Lferr_2887 PF01455 HupF/HypC family Lferr_2888 PF01924 Hydrogenase formation hypA family Lferr_2889 PF16363 GDP-mannose 4,6 dehydratase Lferr_2890 PF16363 GDP-mannose 4,6 dehydratase Lferr_2891 PF00483 Nucleotidyl transferase Lferr_2891 PF01050 Mannose-6-phosphate isomerase Lferr_2892 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Lferr_2893 PF00483 Nucleotidyl transferase Lferr_2894 PF07690 Major Facilitator Superfamily Lferr_2896 PF00490 Delta-aminolevulinic acid dehydratase Lferr_2898 PF03900 Porphobilinogen deaminase, C-terminal domain Lferr_2898 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Lferr_2900 PF01230 HIT domain Lferr_2901 PF00202 Aminotransferase class-III Lferr_2902 PF02581 Thiamine monophosphate synthase Lferr_2903 PF08543 Phosphomethylpyrimidine kinase Lferr_2904 PF00106 short chain dehydrogenase