Lferr_0001 SM00382 ATPases associated with a variety of cellular activities Lferr_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Lferr_0002 SM00480 DNA polymerase III beta subunit Lferr_0004 SM00387 Histidine kinase-like ATPases Lferr_0004 SM00433 TopoisomeraseII Lferr_0006 SM00972 Spore Coat Protein U domain Lferr_0009 SM00972 Spore Coat Protein U domain Lferr_0016 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Lferr_0016 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Lferr_0016 SM00493 Lferr_0016 Lferr_0019 SM00257 Lysin motif Lferr_0024 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Lferr_0024 SM00387 Histidine kinase-like ATPases Lferr_0024 SM00388 His Kinase A (phosphoacceptor) domain Lferr_0025 SM00448 cheY-homologous receiver domain Lferr_0028 SM00387 Histidine kinase-like ATPases Lferr_0028 SM00388 His Kinase A (phosphoacceptor) domain Lferr_0029 SM00382 ATPases associated with a variety of cellular activities Lferr_0029 SM00448 cheY-homologous receiver domain Lferr_0030 SM00564 beta-propeller repeat Lferr_0034 SM01234 Lferr_0034 Lferr_0037 SM00382 ATPases associated with a variety of cellular activities Lferr_0046 SM00450 Rhodanese Homology Domain Lferr_0047 SM00450 Rhodanese Homology Domain Lferr_0056 SM00834 Putative regulatory protein Lferr_0059 SM00563 Phosphate acyltransferases Lferr_0062 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Lferr_0063 SM00382 ATPases associated with a variety of cellular activities Lferr_0103 SM00382 ATPases associated with a variety of cellular activities Lferr_0107 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Lferr_0107 SM00387 Histidine kinase-like ATPases Lferr_0107 SM00388 His Kinase A (phosphoacceptor) domain Lferr_0108 SM00448 cheY-homologous receiver domain Lferr_0108 SM00862 Transcriptional regulatory protein, C terminal Lferr_0117 SM00671 Sel1-like repeats. Lferr_0120 SM00419 helix_turn_helix, cAMP Regulatory protein Lferr_0124 SM00028 Tetratricopeptide repeats Lferr_0125 SM01207 Lferr_0125 Lferr_0126 SM00905 Dihydroneopterin aldolase Lferr_0127 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_0128 SM00857 Resolvase, N terminal domain Lferr_0134 SM00530 Helix-turn-helix XRE-family like proteins Lferr_0137 SM00382 ATPases associated with a variety of cellular activities Lferr_0159 SM00422 helix_turn_helix, mercury resistance Lferr_0164 SM00422 helix_turn_helix, mercury resistance Lferr_0182 SM00530 Helix-turn-helix XRE-family like proteins Lferr_0187 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Lferr_0191 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Lferr_0200 SM00028 Tetratricopeptide repeats Lferr_0205 SM00382 ATPases associated with a variety of cellular activities Lferr_0208 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Lferr_0216 SM00382 ATPases associated with a variety of cellular activities Lferr_0226 SM00487 DEAD-like helicases superfamily Lferr_0232 SM00563 Phosphate acyltransferases Lferr_0247 SM00382 ATPases associated with a variety of cellular activities Lferr_0253 SM01152 Lferr_0253 Lferr_0272 SM00470 ParB-like nuclease domain Lferr_0283 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Lferr_0283 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Lferr_0283 SM00493 Lferr_0283 Lferr_0285 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Lferr_0305 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_0322 SM00450 Rhodanese Homology Domain Lferr_0324 SM00382 ATPases associated with a variety of cellular activities Lferr_0334 SM00855 Phosphoglycerate mutase family Lferr_0337 SM00382 ATPases associated with a variety of cellular activities Lferr_0342 SM00382 ATPases associated with a variety of cellular activities Lferr_0343 SM00363 S4 RNA-binding domain Lferr_0345 SM00507 HNH nucleases Lferr_0346 SM00650 Ribosomal RNA adenine dimethylases Lferr_0349 SM00836 DALR anticodon binding domain Lferr_0349 SM01016 Arginyl tRNA synthetase N terminal dom Lferr_0362 SM00382 ATPases associated with a variety of cellular activities Lferr_0363 SM00387 Histidine kinase-like ATPases Lferr_0363 SM00388 His Kinase A (phosphoacceptor) domain Lferr_0364 SM00382 ATPases associated with a variety of cellular activities Lferr_0364 SM00448 cheY-homologous receiver domain Lferr_0374 SM00878 Biotin carboxylase C-terminal domain Lferr_0379 SM00864 Tubulin/FtsZ family, GTPase domain Lferr_0379 SM00865 Tubulin/FtsZ family, C-terminal domain Lferr_0380 SM00842 Cell division protein FtsA Lferr_0401 SM00957 SecA DEAD-like domain Lferr_0401 SM00958 SecA preprotein cross-linking domain Lferr_0427 SM00479 Lferr_0427 Lferr_0436 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_0436 SM00876 Biotin and Thiamin Synthesis associated domain Lferr_0437 SM01152 Lferr_0437 Lferr_0441 SM00382 ATPases associated with a variety of cellular activities Lferr_0446 SM00849 Metallo-beta-lactamase superfamily Lferr_0447 SM00100 Cyclic nucleotide-monophosphate binding domain Lferr_0447 SM00419 helix_turn_helix, cAMP Regulatory protein Lferr_0449 SM01001 AIR carboxylase Lferr_0455 SM00155 Phospholipase D. Active site motifs. Lferr_0459 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Lferr_0464 SM00947 Carbonic anhydrase Lferr_0479 SM00671 Sel1-like repeats. Lferr_0485 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Lferr_0485 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Lferr_0486 SM00649 Ribosomal protein L11/L12 Lferr_0491 SM00663 RNA polymerase I subunit A N-terminus Lferr_0494 SM00838 Elongation factor G C-terminus Lferr_0494 SM00889 Elongation factor G, domain IV Lferr_0496 SM01403 Lferr_0496 Lferr_0500 SM01382 Lferr_0500 Lferr_0500 SM01383 Lferr_0500 Lferr_0503 SM00322 K homology RNA-binding domain Lferr_0507 SM01374 Lferr_0507 Lferr_0508 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Lferr_0519 SM00316 Ribosomal protein S1-like RNA-binding domain Lferr_0523 SM00363 S4 RNA-binding domain Lferr_0523 SM01390 Lferr_0523 Lferr_0524 SM00662 RNA polymerases D Lferr_0530 SM00014 Acid phosphatase homologues Lferr_0539 SM00487 DEAD-like helicases superfamily Lferr_0539 SM00490 helicase superfamily c-terminal domain Lferr_0539 SM00982 Lferr_0539 Lferr_0539 SM01058 CarD-like/TRCF domain Lferr_0543 SM00422 helix_turn_helix, mercury resistance Lferr_0544 SM00463 Small MutS-related domain Lferr_0546 SM00843 Lferr_0546 Lferr_0549 SM00382 ATPases associated with a variety of cellular activities Lferr_0554 SM00316 Ribosomal protein S1-like RNA-binding domain Lferr_0558 SM01387 Lferr_0558 Lferr_0559 SM00316 Ribosomal protein S1-like RNA-binding domain Lferr_0559 SM00322 K homology RNA-binding domain Lferr_0561 SM00849 Metallo-beta-lactamase superfamily Lferr_0564 SM00479 Lferr_0564 Lferr_0565 SM00960 Roadblock/LC7 domain Lferr_0573 SM00671 Sel1-like repeats. Lferr_0583 SM00257 Lysin motif Lferr_0586 SM01329 Lferr_0586 Lferr_0589 SM00881 CoA binding domain Lferr_0591 SM00938 Nitrogen regulatory protein P-II Lferr_0593 SM00363 S4 RNA-binding domain Lferr_0598 SM01007 Class II Aldolase and Adducin N-terminal domain Lferr_0608 SM00382 ATPases associated with a variety of cellular activities Lferr_0608 SM00448 cheY-homologous receiver domain Lferr_0610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Lferr_0610 SM00387 Histidine kinase-like ATPases Lferr_0610 SM00388 His Kinase A (phosphoacceptor) domain Lferr_0621 SM00867 YceI-like domain Lferr_0623 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Lferr_0623 SM01232 Lferr_0623 Lferr_0624 SM00450 Rhodanese Homology Domain Lferr_0626 SM01230 Lferr_0626 Lferr_0637 SM00966 SpoVT / AbrB like domain Lferr_0642 SM00382 ATPases associated with a variety of cellular activities Lferr_0671 SM00382 ATPases associated with a variety of cellular activities Lferr_0676 SM00986 Uracil DNA glycosylase superfamily Lferr_0676 SM00987 UreE urease accessory protein, C-terminal domain Lferr_0678 SM00382 ATPases associated with a variety of cellular activities Lferr_0678 SM01086 C-terminal, D2-small domain, of ClpB protein Lferr_0682 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Lferr_0682 SM00245 tail specific protease Lferr_0687 SM00450 Rhodanese Homology Domain Lferr_0691 SM00996 S-adenosyl-L-homocysteine hydrolase Lferr_0691 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lferr_0694 SM00014 Acid phosphatase homologues Lferr_0699 SM00883 Chaperonin 10 Kd subunit Lferr_0707 SM00382 ATPases associated with a variety of cellular activities Lferr_0712 SM00904 Riboflavin kinase Lferr_0717 SM00072 Guanylate kinase homologues. Lferr_0718 SM01409 Lferr_0718 Lferr_0719 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Lferr_0719 SM00954 Region found in RelA / SpoT proteins Lferr_0722 SM00487 DEAD-like helicases superfamily Lferr_0722 SM00490 helicase superfamily c-terminal domain Lferr_0741 SM00487 DEAD-like helicases superfamily Lferr_0741 SM00490 helicase superfamily c-terminal domain Lferr_0742 SM00357 Cold shock protein domain Lferr_0743 SM00487 DEAD-like helicases superfamily Lferr_0743 SM00490 helicase superfamily c-terminal domain Lferr_0748 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_0751 SM00116 Domain in cystathionine beta-synthase and other proteins. Lferr_0751 SM01091 Transporter associated domain Lferr_0755 SM00382 ATPases associated with a variety of cellular activities Lferr_0768 SM00382 ATPases associated with a variety of cellular activities Lferr_0769 SM00984 UDP binding domain Lferr_0771 SM00855 Phosphoglycerate mutase family Lferr_0773 SM00530 Helix-turn-helix XRE-family like proteins Lferr_0789 SM00851 MGS-like domain Lferr_0789 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Lferr_0790 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Lferr_0797 SM00382 ATPases associated with a variety of cellular activities Lferr_0799 SM00769 Water Stress and Hypersensitive response Lferr_0805 SM00382 ATPases associated with a variety of cellular activities Lferr_0807 SM00357 Cold shock protein domain Lferr_0807 SM00382 ATPases associated with a variety of cellular activities Lferr_0807 SM00959 Rho termination factor, N-terminal domain Lferr_0809 SM00919 Malic enzyme, NAD binding domain Lferr_0809 SM01274 Lferr_0809 Lferr_0817 SM00382 ATPases associated with a variety of cellular activities Lferr_0832 SM00487 DEAD-like helicases superfamily Lferr_0842 SM00382 ATPases associated with a variety of cellular activities Lferr_0848 SM00382 ATPases associated with a variety of cellular activities Lferr_0875 SM00563 Phosphate acyltransferases Lferr_0879 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Lferr_0883 SM00965 Secretin and TonB N terminus short domain Lferr_0891 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Lferr_0891 SM00534 ATPase domain of DNA mismatch repair MUTS family Lferr_0903 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Lferr_0903 SM00292 breast cancer carboxy-terminal domain Lferr_0903 SM00532 Ligase N family Lferr_0918 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Lferr_0920 SM01092 CO dehydrogenase flavoprotein C-terminal domain Lferr_0933 SM00563 Phosphate acyltransferases Lferr_0936 SM00822 Lferr_0936 Lferr_0939 SM00825 Beta-ketoacyl synthase Lferr_0951 SM01092 CO dehydrogenase flavoprotein C-terminal domain Lferr_0952 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Lferr_0959 SM00831 Cation transporter/ATPase, N-terminus Lferr_0969 SM00487 DEAD-like helicases superfamily Lferr_0971 SM00487 DEAD-like helicases superfamily Lferr_0971 SM00490 helicase superfamily c-terminal domain Lferr_0972 SM00829 Enoylreductase Lferr_0975 SM01192 Lferr_0975 Lferr_0975 SM01193 Lferr_0975 Lferr_0977 SM00841 Elongation factor P, C-terminal Lferr_0977 SM01185 Lferr_0977 Lferr_0979 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Lferr_0979 SM00465 GIY-YIG type nucleases (URI domain) Lferr_0981 SM00100 Cyclic nucleotide-monophosphate binding domain Lferr_0981 SM00419 helix_turn_helix, cAMP Regulatory protein Lferr_0983 SM01353 Lferr_0983 Lferr_0997 SM00382 ATPases associated with a variety of cellular activities Lferr_0997 SM00464 Found in ATP-dependent protease La (LON) Lferr_1016 SM00434 DNA Topoisomerase IV Lferr_1019 SM00830 Chorismate mutase type II Lferr_1025 SM00316 Ribosomal protein S1-like RNA-binding domain Lferr_1026 SM00411 bacterial (prokaryotic) histone like domain Lferr_1028 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Lferr_1032 SM00382 ATPases associated with a variety of cellular activities Lferr_1032 SM00994 ClpX C4-type zinc finger Lferr_1032 SM01086 C-terminal, D2-small domain, of ClpB protein Lferr_1033 SM00382 ATPases associated with a variety of cellular activities Lferr_1033 SM00464 Found in ATP-dependent protease La (LON) Lferr_1035 SM00411 bacterial (prokaryotic) histone like domain Lferr_1037 SM00014 Acid phosphatase homologues Lferr_1043 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Lferr_1050 SM00382 ATPases associated with a variety of cellular activities Lferr_1052 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Lferr_1060 SM00487 DEAD-like helicases superfamily Lferr_1060 SM00490 helicase superfamily c-terminal domain Lferr_1063 SM00382 ATPases associated with a variety of cellular activities Lferr_1071 SM00849 Metallo-beta-lactamase superfamily Lferr_1072 SM00382 ATPases associated with a variety of cellular activities Lferr_1092 SM00960 Roadblock/LC7 domain Lferr_1097 SM00382 ATPases associated with a variety of cellular activities Lferr_1101 SM00481 DNA polymerase alpha chain like domain Lferr_1105 SM00967 RNA 2'-O ribose methyltransferase substrate binding Lferr_1107 SM00849 Metallo-beta-lactamase superfamily Lferr_1108 SM00897 FIST N domain Lferr_1108 SM01204 Lferr_1108 Lferr_1109 SM00382 ATPases associated with a variety of cellular activities Lferr_1110 SM00382 ATPases associated with a variety of cellular activities Lferr_1117 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Lferr_1118 SM00838 Elongation factor G C-terminus Lferr_1121 SM00358 Double-stranded RNA binding motif Lferr_1121 SM00535 Ribonuclease III family Lferr_1148 SM00422 helix_turn_helix, mercury resistance Lferr_1150 SM00487 DEAD-like helicases superfamily Lferr_1150 SM00490 helicase superfamily c-terminal domain Lferr_1151 SM00448 cheY-homologous receiver domain Lferr_1151 SM00862 Transcriptional regulatory protein, C terminal Lferr_1152 SM00387 Histidine kinase-like ATPases Lferr_1152 SM00388 His Kinase A (phosphoacceptor) domain Lferr_1156 SM00382 ATPases associated with a variety of cellular activities Lferr_1167 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Lferr_1169 SM00935 Outer membrane protein (OmpH-like) Lferr_1177 SM00481 DNA polymerase alpha chain like domain Lferr_1179 SM00977 TilS substrate C-terminal domain Lferr_1185 SM00670 Large family of predicted nucleotide-binding domains Lferr_1195 SM00893 Electron transfer flavoprotein domain Lferr_1196 SM00893 Electron transfer flavoprotein domain Lferr_1206 SM00382 ATPases associated with a variety of cellular activities Lferr_1217 SM00382 ATPases associated with a variety of cellular activities Lferr_1219 SM00834 Putative regulatory protein Lferr_1220 SM00248 ankyrin repeats Lferr_1220 SM00450 Rhodanese Homology Domain Lferr_1244 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Lferr_1244 SM00382 ATPases associated with a variety of cellular activities Lferr_1274 SM00530 Helix-turn-helix XRE-family like proteins Lferr_1277 SM00382 ATPases associated with a variety of cellular activities Lferr_1284 SM00974 Lferr_1284 Lferr_1293 SM00411 bacterial (prokaryotic) histone like domain Lferr_1294 SM00411 bacterial (prokaryotic) histone like domain Lferr_1301 SM00563 Phosphate acyltransferases Lferr_1332 SM00530 Helix-turn-helix XRE-family like proteins Lferr_1339 SM00382 ATPases associated with a variety of cellular activities Lferr_1346 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Lferr_1356 SM00100 Cyclic nucleotide-monophosphate binding domain Lferr_1356 SM00419 helix_turn_helix, cAMP Regulatory protein Lferr_1364 SM00861 Transketolase, pyrimidine binding domain Lferr_1365 SM00346 helix_turn_helix isocitrate lyase regulation Lferr_1375 SM00327 von Willebrand factor (vWF) type A domain Lferr_1381 SM00877 Lferr_1381 Lferr_1382 SM00877 Lferr_1382 Lferr_1383 SM00877 Lferr_1383 Lferr_1388 SM00961 Ribulose bisphosphate carboxylase, small chain Lferr_1405 SM00052 Putative diguanylate phosphodiesterase Lferr_1405 SM00267 diguanylate cyclase Lferr_1410 SM00470 ParB-like nuclease domain Lferr_1415 SM00052 Putative diguanylate phosphodiesterase Lferr_1415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Lferr_1415 SM00091 PAS domain Lferr_1415 SM00267 diguanylate cyclase Lferr_1425 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Lferr_1425 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Lferr_1425 SM00493 Lferr_1425 Lferr_1431 SM00947 Carbonic anhydrase Lferr_1434 SM00155 Phospholipase D. Active site motifs. Lferr_1437 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Lferr_1437 SM00534 ATPase domain of DNA mismatch repair MUTS family Lferr_1442 SM00479 Lferr_1442 Lferr_1444 SM00463 Small MutS-related domain Lferr_1453 SM00116 Domain in cystathionine beta-synthase and other proteins. Lferr_1453 SM01240 Lferr_1453 Lferr_1457 SM00966 SpoVT / AbrB like domain Lferr_1460 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Lferr_1470 SM00363 S4 RNA-binding domain Lferr_1471 SM00478 endonuclease III Lferr_1479 SM01133 Lferr_1479 Lferr_1489 SM00861 Transketolase, pyrimidine binding domain Lferr_1515 SM00382 ATPases associated with a variety of cellular activities Lferr_1522 SM00861 Transketolase, pyrimidine binding domain Lferr_1527 SM00478 endonuclease III Lferr_1549 SM00880 Lferr_1549 Lferr_1549 SM01118 Lferr_1549 Lferr_1561 SM00244 prohibitin homologues Lferr_1562 SM00244 prohibitin homologues Lferr_1564 SM00788 Adenylosuccinate synthetase Lferr_1565 SM00316 Ribosomal protein S1-like RNA-binding domain Lferr_1565 SM00357 Cold shock protein domain Lferr_1565 SM00955 Lferr_1565 Lferr_1568 SM00852 Probable molybdopterin binding domain Lferr_1582 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Lferr_1583 SM00822 Lferr_1583 Lferr_1584 SM00823 Phosphopantetheine attachment site Lferr_1585 SM00825 Beta-ketoacyl synthase Lferr_1591 SM00382 ATPases associated with a variety of cellular activities Lferr_1593 SM00493 Lferr_1593 Lferr_1597 SM00116 Domain in cystathionine beta-synthase and other proteins. Lferr_1599 SM00853 MutL C terminal dimerisation domain Lferr_1599 SM01340 Lferr_1599 Lferr_1601 SM00562 Lferr_1601 Lferr_1603 SM00028 Tetratricopeptide repeats Lferr_1604 SM00530 Helix-turn-helix XRE-family like proteins Lferr_1608 SM00564 beta-propeller repeat Lferr_1638 SM00382 ATPases associated with a variety of cellular activities Lferr_1638 SM01086 C-terminal, D2-small domain, of ClpB protein Lferr_1642 SM00861 Transketolase, pyrimidine binding domain Lferr_1649 SM00564 beta-propeller repeat Lferr_1657 SM00831 Cation transporter/ATPase, N-terminus Lferr_1658 SM00917 LeuA allosteric (dimerisation) domain Lferr_1659 SM00344 helix_turn_helix ASNC type Lferr_1664 SM00421 helix_turn_helix, Lux Regulon Lferr_1679 SM00347 helix_turn_helix multiple antibiotic resistance protein Lferr_1689 SM01350 Lferr_1689 Lferr_1691 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Lferr_1693 SM00434 DNA Topoisomerase IV Lferr_1694 SM00387 Histidine kinase-like ATPases Lferr_1694 SM00433 TopoisomeraseII Lferr_1695 SM00387 Histidine kinase-like ATPases Lferr_1695 SM00388 His Kinase A (phosphoacceptor) domain Lferr_1696 SM00448 cheY-homologous receiver domain Lferr_1696 SM00862 Transcriptional regulatory protein, C terminal Lferr_1716 SM01323 Lferr_1716 Lferr_1719 SM01091 Transporter associated domain Lferr_1731 SM00859 Semialdehyde dehydrogenase, NAD binding domain Lferr_1732 SM01329 Lferr_1732 Lferr_1735 SM00852 Probable molybdopterin binding domain Lferr_1738 SM00642 Alpha-amylase domain Lferr_1739 SM00642 Alpha-amylase domain Lferr_1759 SM01126 Lferr_1759 Lferr_1762 SM00382 ATPases associated with a variety of cellular activities Lferr_1769 SM00845 GatB domain Lferr_1779 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_1797 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Lferr_1806 SM00530 Helix-turn-helix XRE-family like proteins Lferr_1816 SM00327 von Willebrand factor (vWF) type A domain Lferr_1826 SM00382 ATPases associated with a variety of cellular activities Lferr_1833 SM00363 S4 RNA-binding domain Lferr_1835 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Lferr_1843 SM00347 helix_turn_helix multiple antibiotic resistance protein Lferr_1847 SM00382 ATPases associated with a variety of cellular activities Lferr_1851 SM00341 Helicase and RNase D C-terminal Lferr_1851 SM00487 DEAD-like helicases superfamily Lferr_1851 SM00490 helicase superfamily c-terminal domain Lferr_1851 SM00956 Lferr_1851 Lferr_1852 SM01219 Lferr_1852 Lferr_1873 SM00363 S4 RNA-binding domain Lferr_1874 SM00316 Ribosomal protein S1-like RNA-binding domain Lferr_1875 SM00840 Lferr_1875 Lferr_1883 SM00448 cheY-homologous receiver domain Lferr_1883 SM00862 Transcriptional regulatory protein, C terminal Lferr_1884 SM00387 Histidine kinase-like ATPases Lferr_1884 SM00388 His Kinase A (phosphoacceptor) domain Lferr_1891 SM00938 Nitrogen regulatory protein P-II Lferr_1899 SM00564 beta-propeller repeat Lferr_1900 SM01359 Lferr_1900 Lferr_1900 SM01360 Lferr_1900 Lferr_1902 SM00960 Roadblock/LC7 domain Lferr_1903 SM00849 Metallo-beta-lactamase superfamily Lferr_1907 SM00798 AICARFT/IMPCHase bienzyme Lferr_1907 SM00851 MGS-like domain Lferr_1908 SM01209 Lferr_1908 Lferr_1908 SM01210 Lferr_1908 Lferr_1918 SM00862 Transcriptional regulatory protein, C terminal Lferr_1929 SM00382 ATPases associated with a variety of cellular activities Lferr_1930 SM00382 ATPases associated with a variety of cellular activities Lferr_1934 SM00345 helix_turn_helix gluconate operon transcriptional repressor Lferr_1934 SM00866 Lferr_1934 Lferr_1949 SM00862 Transcriptional regulatory protein, C terminal Lferr_1955 SM00855 Phosphoglycerate mutase family Lferr_1957 SM00387 Histidine kinase-like ATPases Lferr_1957 SM00388 His Kinase A (phosphoacceptor) domain Lferr_1958 SM00448 cheY-homologous receiver domain Lferr_1958 SM00862 Transcriptional regulatory protein, C terminal Lferr_1959 SM00479 Lferr_1959 Lferr_1965 SM00831 Cation transporter/ATPase, N-terminus Lferr_1971 SM00400 zinc finger Lferr_1971 SM00493 Lferr_1971 Lferr_1972 SM00463 Small MutS-related domain Lferr_1972 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Lferr_1972 SM00534 ATPase domain of DNA mismatch repair MUTS family Lferr_1978 SM00100 Cyclic nucleotide-monophosphate binding domain Lferr_1979 SM00464 Found in ATP-dependent protease La (LON) Lferr_1980 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_1988 SM01211 Lferr_1988 Lferr_1990 SM00998 Adenylosuccinate lyase C-terminus Lferr_1992 SM01130 Lferr_1992 Lferr_1994 SM00646 Lferr_1994 Lferr_1997 SM00450 Rhodanese Homology Domain Lferr_2002 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Lferr_2007 SM00487 DEAD-like helicases superfamily Lferr_2007 SM00490 helicase superfamily c-terminal domain Lferr_2012 SM00487 DEAD-like helicases superfamily Lferr_2027 SM00382 ATPases associated with a variety of cellular activities Lferr_2039 SM00487 DEAD-like helicases superfamily Lferr_2044 SM00382 ATPases associated with a variety of cellular activities Lferr_2051 SM00422 helix_turn_helix, mercury resistance Lferr_2077 SM01126 Lferr_2077 Lferr_2086 SM00938 Nitrogen regulatory protein P-II Lferr_2096 SM00411 bacterial (prokaryotic) histone like domain Lferr_2109 SM00422 helix_turn_helix, mercury resistance Lferr_2140 SM00422 helix_turn_helix, mercury resistance Lferr_2143 SM00671 Sel1-like repeats. Lferr_2147 SM00487 DEAD-like helicases superfamily Lferr_2147 SM00491 Lferr_2147 Lferr_2151 SM00899 Lferr_2151 Lferr_2163 SM00327 von Willebrand factor (vWF) type A domain Lferr_2171 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_2174 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_2188 SM00450 Rhodanese Homology Domain Lferr_2189 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_2197 SM00936 Penicillin-binding protein 5, C-terminal domain Lferr_2200 SM00729 Elongator protein 3, MiaB family, Radical SAM Lferr_2208 SM00960 Roadblock/LC7 domain Lferr_2212 SM00563 Phosphate acyltransferases Lferr_2219 SM00644 Lferr_2219 Lferr_2225 SM00917 LeuA allosteric (dimerisation) domain Lferr_2226 SM00382 ATPases associated with a variety of cellular activities Lferr_2233 SM00382 ATPases associated with a variety of cellular activities Lferr_2236 SM00422 helix_turn_helix, mercury resistance Lferr_2237 SM00411 bacterial (prokaryotic) histone like domain Lferr_2238 SM00873 B3/4 domain Lferr_2238 SM00874 tRNA synthetase B5 domain Lferr_2238 SM00896 Ferredoxin-fold anticodon binding domain Lferr_2243 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Lferr_2251 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Lferr_2251 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Lferr_2252 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Lferr_2262 SM00382 ATPases associated with a variety of cellular activities Lferr_2267 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Lferr_2270 SM00849 Metallo-beta-lactamase superfamily Lferr_2290 SM00271 DnaJ molecular chaperone homology domain Lferr_2304 SM00849 Metallo-beta-lactamase superfamily Lferr_2304 SM01027 Beta-Casp domain Lferr_2306 SM00478 endonuclease III Lferr_2307 SM00028 Tetratricopeptide repeats Lferr_2310 SM00671 Sel1-like repeats. Lferr_2316 SM00382 ATPases associated with a variety of cellular activities Lferr_2318 SM00382 ATPases associated with a variety of cellular activities Lferr_2327 SM00858 Lferr_2327 Lferr_2338 SM00028 Tetratricopeptide repeats Lferr_2358 SM01103 Lferr_2358 Lferr_2368 SM00382 ATPases associated with a variety of cellular activities Lferr_2368 SM01086 C-terminal, D2-small domain, of ClpB protein Lferr_2372 SM00382 ATPases associated with a variety of cellular activities Lferr_2373 SM00382 ATPases associated with a variety of cellular activities Lferr_2373 SM00962 SRP54-type protein, GTPase domain Lferr_2373 SM00963 SRP54-type protein, helical bundle domain Lferr_2378 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Lferr_2378 SM01232 Lferr_2378 Lferr_2380 SM00937 Lferr_2380 Lferr_2382 SM00028 Tetratricopeptide repeats Lferr_2385 SM01400 Lferr_2385 Lferr_2392 SM00966 SpoVT / AbrB like domain Lferr_2400 SM00382 ATPases associated with a variety of cellular activities Lferr_2413 SM00487 DEAD-like helicases superfamily Lferr_2419 SM00974 Lferr_2419 Lferr_2420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Lferr_2423 SM00342 helix_turn_helix, arabinose operon control protein Lferr_2423 SM00478 endonuclease III Lferr_2423 SM01009 AlkA N-terminal domain Lferr_2438 SM01011 Aminopeptidase P, N-terminal domain Lferr_2440 SM00382 ATPases associated with a variety of cellular activities Lferr_2441 SM01005 Alanine racemase, C-terminal domain Lferr_2442 SM00382 ATPases associated with a variety of cellular activities Lferr_2456 SM00244 prohibitin homologues Lferr_2458 SM00642 Alpha-amylase domain Lferr_2470 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Lferr_2477 SM00382 ATPases associated with a variety of cellular activities Lferr_2477 SM00962 SRP54-type protein, GTPase domain Lferr_2477 SM00963 SRP54-type protein, helical bundle domain Lferr_2480 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Lferr_2481 SM00226 Low molecular weight phosphatase family Lferr_2483 SM00382 ATPases associated with a variety of cellular activities Lferr_2499 SM00327 von Willebrand factor (vWF) type A domain Lferr_2502 SM00986 Uracil DNA glycosylase superfamily Lferr_2502 SM00987 UreE urease accessory protein, C-terminal domain Lferr_2506 SM00966 SpoVT / AbrB like domain Lferr_2509 SM00966 SpoVT / AbrB like domain Lferr_2512 SM00382 ATPases associated with a variety of cellular activities Lferr_2519 SM00382 ATPases associated with a variety of cellular activities Lferr_2519 SM00448 cheY-homologous receiver domain Lferr_2520 SM00091 PAS domain Lferr_2520 SM00387 Histidine kinase-like ATPases Lferr_2520 SM00388 His Kinase A (phosphoacceptor) domain Lferr_2524 SM00460 Transglutaminase/protease-like homologues Lferr_2525 SM00763 PrkA AAA domain Lferr_2530 SM00938 Nitrogen regulatory protein P-II Lferr_2538 SM00936 Penicillin-binding protein 5, C-terminal domain Lferr_2548 SM00382 ATPases associated with a variety of cellular activities Lferr_2550 SM00862 Transcriptional regulatory protein, C terminal Lferr_2556 SM00831 Cation transporter/ATPase, N-terminus Lferr_2567 SM00316 Ribosomal protein S1-like RNA-binding domain Lferr_2568 SM00382 ATPases associated with a variety of cellular activities Lferr_2568 SM00448 cheY-homologous receiver domain Lferr_2570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Lferr_2570 SM00387 Histidine kinase-like ATPases Lferr_2570 SM00388 His Kinase A (phosphoacceptor) domain Lferr_2576 SM00382 ATPases associated with a variety of cellular activities Lferr_2598 SM00382 ATPases associated with a variety of cellular activities Lferr_2601 SM00382 ATPases associated with a variety of cellular activities Lferr_2602 SM00382 ATPases associated with a variety of cellular activities Lferr_2617 SM00822 Lferr_2617 Lferr_2617 SM00823 Phosphopantetheine attachment site Lferr_2617 SM00825 Beta-ketoacyl synthase Lferr_2617 SM00826 Lferr_2617 Lferr_2617 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Lferr_2617 SM00829 Enoylreductase Lferr_2617 SM01294 Lferr_2617 Lferr_2623 SM00478 endonuclease III Lferr_2634 SM00382 ATPases associated with a variety of cellular activities Lferr_2638 SM00116 Domain in cystathionine beta-synthase and other proteins. Lferr_2661 SM00961 Ribulose bisphosphate carboxylase, small chain Lferr_2663 SM00327 von Willebrand factor (vWF) type A domain Lferr_2664 SM00052 Putative diguanylate phosphodiesterase Lferr_2664 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Lferr_2664 SM00267 diguanylate cyclase Lferr_2668 SM00732 Likely ribonuclease with RNase H fold. Lferr_2675 SM00861 Transketolase, pyrimidine binding domain Lferr_2679 SM00859 Semialdehyde dehydrogenase, NAD binding domain Lferr_2686 SM00363 S4 RNA-binding domain Lferr_2687 SM00831 Cation transporter/ATPase, N-terminus Lferr_2692 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Lferr_2692 SM00474 3'-5' exonuclease Lferr_2692 SM00475 5'-3' exonuclease Lferr_2692 SM00482 DNA polymerase A domain Lferr_2698 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Lferr_2700 SM00271 DnaJ molecular chaperone homology domain Lferr_2703 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Lferr_2703 SM00481 DNA polymerase alpha chain like domain Lferr_2703 SM00483 DNA polymerase X family Lferr_2735 SM00387 Histidine kinase-like ATPases Lferr_2735 SM00388 His Kinase A (phosphoacceptor) domain Lferr_2736 SM00448 cheY-homologous receiver domain Lferr_2737 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Lferr_2755 SM00387 Histidine kinase-like ATPases Lferr_2759 SM00830 Chorismate mutase type II Lferr_2760 SM00382 ATPases associated with a variety of cellular activities Lferr_2775 SM00382 ATPases associated with a variety of cellular activities Lferr_2807 SM00382 ATPases associated with a variety of cellular activities Lferr_2815 SM00470 ParB-like nuclease domain Lferr_2818 SM01228 Lferr_2818 Lferr_2821 SM00852 Probable molybdopterin binding domain Lferr_2837 SM00382 ATPases associated with a variety of cellular activities Lferr_2852 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Lferr_2853 SM00861 Transketolase, pyrimidine binding domain Lferr_2872 SM00448 cheY-homologous receiver domain Lferr_2872 SM00862 Transcriptional regulatory protein, C terminal Lferr_2873 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Lferr_2873 SM00387 Histidine kinase-like ATPases Lferr_2873 SM00388 His Kinase A (phosphoacceptor) domain Lferr_2896 SM01004 Delta-aminolevulinic acid dehydratase Lferr_2904 SM00822 Lferr_2904