locus-tag class description MQE22_00005 PF00308 Bacterial dnaA protein MQE22_00005 PF08299 Bacterial dnaA protein helix-turn-helix MQE22_00005 PF11638 DnaA N-terminal domain MQE22_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain MQE22_00010 PF02767 DNA polymerase III beta subunit, central domain MQE22_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain MQE22_00015 PF02463 RecF/RecN/SMC N terminal domain MQE22_00020 PF01751 Toprim domain MQE22_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_00020 PF00986 DNA gyrase B subunit, carboxyl terminus MQE22_00020 PF00204 DNA gyrase B MQE22_00020 PF18053 DNA gyrase B subunit insert domain MQE22_00025 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_00030 PF18766 SWI2/SNF2 ATPase MQE22_00030 PF12008 Type I restriction and modification enzyme - subunit R C terminal MQE22_00030 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) MQE22_00035 PF02661 Fic/DOC family MQE22_00040 PF01420 Type I restriction modification DNA specificity domain MQE22_00045 PF17761 DUF1016 N-terminal domain MQE22_00045 PF06250 YhcG PDDEXK nuclease domain MQE22_00050 PF12161 HsdM N-terminal domain MQE22_00050 PF02384 N-6 DNA Methylase MQE22_00055 PF00083 Sugar (and other) transporter MQE22_00060 PF00005 ABC transporter MQE22_00060 PF17912 MalK OB fold domain MQE22_00065 PF00528 Binding-protein-dependent transport system inner membrane component MQE22_00070 PF00528 Binding-protein-dependent transport system inner membrane component MQE22_00075 PF01547 Bacterial extracellular solute-binding protein MQE22_00085 PF02653 Branched-chain amino acid transport system / permease component MQE22_00090 PF00005 ABC transporter MQE22_00095 PF13407 Periplasmic binding protein domain MQE22_00100 PF00294 pfkB family carbohydrate kinase MQE22_00105 PF00488 MutS domain V MQE22_00105 PF01713 Smr domain MQE22_00110 PF00488 MutS domain V MQE22_00110 PF05190 MutS family domain IV MQE22_00110 PF05192 MutS domain III MQE22_00110 PF05188 MutS domain II MQE22_00110 PF01624 MutS domain I MQE22_00115 PF01266 FAD dependent oxidoreductase MQE22_00115 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MQE22_00120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MQE22_00120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MQE22_00125 PF00230 Major intrinsic protein MQE22_00130 PF02733 Dak1 domain MQE22_00135 PF02734 DAK2 domain MQE22_00140 PF05524 PEP-utilising enzyme, N-terminal MQE22_00140 PF00391 PEP-utilising enzyme, mobile domain MQE22_00140 PF02896 PEP-utilising enzyme, TIM barrel domain MQE22_00140 PF00381 PTS HPr component phosphorylation site MQE22_00140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MQE22_00145 PF01544 CorA-like Mg2+ transporter protein MQE22_00150 PF03776 Septum formation topological specificity factor MinE MQE22_00155 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MQE22_00160 PF05209 Septum formation inhibitor MinC, N-terminal domain MQE22_00160 PF03775 Septum formation inhibitor MinC, C-terminal domain MQE22_00165 PF11953 Domain of unknown function (DUF3470) MQE22_00165 PF00037 4Fe-4S binding domain MQE22_00170 PF01131 DNA topoisomerase MQE22_00170 PF01751 Toprim domain MQE22_00170 PF13368 Topoisomerase C-terminal repeat MQE22_00175 PF04361 Protein of unknown function (DUF494) MQE22_00180 PF17782 DprA winged helix domain MQE22_00180 PF02481 DNA recombination-mediator protein A MQE22_00185 PF01476 LysM domain MQE22_00190 PF01327 Polypeptide deformylase MQE22_00195 PF02911 Formyl transferase, C-terminal domain MQE22_00195 PF00551 Formyl transferase MQE22_00200 PF01029 NusB family MQE22_00200 PF01189 16S rRNA methyltransferase RsmB/F MQE22_00205 PF00989 PAS fold MQE22_00205 PF00512 His Kinase A (phospho-acceptor) domain MQE22_00205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_00205 PF00672 HAMP domain MQE22_00210 PF00158 Sigma-54 interaction domain MQE22_00210 PF00072 Response regulator receiver domain MQE22_00210 PF02954 Bacterial regulatory protein, Fis family MQE22_00215 PF00994 Probable molybdopterin binding domain MQE22_00220 PF01134 Glucose inhibited division protein A MQE22_00220 PF13932 GidA associated domain MQE22_00225 PF02527 rRNA small subunit methyltransferase G MQE22_00230 PF13614 AAA domain MQE22_00235 PF02195 ParB-like nuclease domain MQE22_00235 PF17762 HTH domain found in ParB protein MQE22_00245 PF00119 ATP synthase A chain MQE22_00250 PF00137 ATP synthase subunit C MQE22_00255 PF00430 ATP synthase B/B' CF(0) MQE22_00260 PF00213 ATP synthase delta (OSCP) subunit MQE22_00265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MQE22_00265 PF00306 ATP synthase alpha/beta chain, C terminal domain MQE22_00265 PF02874 ATP synthase alpha/beta family, beta-barrel domain MQE22_00270 PF00231 ATP synthase MQE22_00275 PF02874 ATP synthase alpha/beta family, beta-barrel domain MQE22_00275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MQE22_00280 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MQE22_00280 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MQE22_00285 PF00132 Bacterial transferase hexapeptide (six repeats) MQE22_00285 PF14602 Hexapeptide repeat of succinyl-transferase MQE22_00285 PF12804 MobA-like NTP transferase domain MQE22_00290 PF01380 SIS domain MQE22_00295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_00295 PF03466 LysR substrate binding domain MQE22_00300 PF07690 Major Facilitator Superfamily MQE22_00305 PF02321 Outer membrane efflux protein MQE22_00310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE22_00310 PF00529 HlyD membrane-fusion protein of T1SS MQE22_00315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE22_00315 PF00529 HlyD membrane-fusion protein of T1SS MQE22_00320 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_00320 PF14759 Reductase C-terminal MQE22_00325 PF04343 Protein of unknown function, DUF488 MQE22_00330 PF07690 Major Facilitator Superfamily MQE22_00340 PF02665 Nitrate reductase gamma subunit MQE22_00345 PF02613 Nitrate reductase delta subunit MQE22_00350 PF13247 4Fe-4S dicluster domain MQE22_00350 PF14711 Respiratory nitrate reductase beta C-terminal MQE22_00355 PF14710 Respiratory nitrate reductase alpha N-terminal MQE22_00355 PF01568 Molydopterin dinucleotide binding domain MQE22_00355 PF00384 Molybdopterin oxidoreductase MQE22_00375 PF13417 Glutathione S-transferase, N-terminal domain MQE22_00380 PF03595 Voltage-dependent anion channel MQE22_00400 PF01597 Glycine cleavage H-protein MQE22_00415 PF00970 Oxidoreductase FAD-binding domain MQE22_00415 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE22_00415 PF00175 Oxidoreductase NAD-binding domain MQE22_00420 PF00970 Oxidoreductase FAD-binding domain MQE22_00420 PF00042 Globin MQE22_00420 PF00175 Oxidoreductase NAD-binding domain MQE22_00425 PF13545 Crp-like helix-turn-helix domain MQE22_00425 PF00027 Cyclic nucleotide-binding domain MQE22_00430 PF02371 Transposase IS116/IS110/IS902 family MQE22_00430 PF01548 Transposase MQE22_00435 PF02371 Transposase IS116/IS110/IS902 family MQE22_00435 PF01548 Transposase MQE22_00440 PF01548 Transposase MQE22_00440 PF02371 Transposase IS116/IS110/IS902 family MQE22_00445 PF02371 Transposase IS116/IS110/IS902 family MQE22_00445 PF01548 Transposase MQE22_00450 PF08721 TnsA endonuclease C terminal MQE22_00450 PF08722 TnsA endonuclease N terminal MQE22_00455 PF00665 Integrase core domain MQE22_00460 PF13401 AAA domain MQE22_00460 PF11426 Tn7 transposition regulator TnsC MQE22_00480 PF03707 Bacterial signalling protein N terminal repeat MQE22_00480 PF00990 Diguanylate cyclase, GGDEF domain MQE22_00480 PF00563 EAL domain MQE22_00485 PF00563 EAL domain MQE22_00485 PF03707 Bacterial signalling protein N terminal repeat MQE22_00485 PF00990 Diguanylate cyclase, GGDEF domain MQE22_00490 PF00753 Metallo-beta-lactamase superfamily MQE22_00490 PF00581 Rhodanese-like domain MQE22_00550 PF02371 Transposase IS116/IS110/IS902 family MQE22_00550 PF01548 Transposase MQE22_00555 PF02371 Transposase IS116/IS110/IS902 family MQE22_00555 PF01548 Transposase MQE22_00560 PF01740 STAS domain MQE22_00560 PF00916 Sulfate permease family MQE22_00565 PF00817 impB/mucB/samB family MQE22_00565 PF11799 impB/mucB/samB family C-terminal domain MQE22_00590 PF00563 EAL domain MQE22_00590 PF00990 Diguanylate cyclase, GGDEF domain MQE22_00590 PF03707 Bacterial signalling protein N terminal repeat MQE22_00595 PF00226 DnaJ domain MQE22_00595 PF01556 DnaJ C terminal domain MQE22_00600 PF13361 UvrD-like helicase C-terminal domain MQE22_00600 PF00580 UvrD/REP helicase N-terminal domain MQE22_00610 PF00512 His Kinase A (phospho-acceptor) domain MQE22_00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_00610 PF00672 HAMP domain MQE22_00615 PF00486 Transcriptional regulatory protein, C terminal MQE22_00615 PF00072 Response regulator receiver domain MQE22_00630 PF13533 Biotin-lipoyl like MQE22_00635 PF00873 AcrB/AcrD/AcrF family MQE22_00645 PF01741 Large-conductance mechanosensitive channel, MscL MQE22_00650 PF02646 RmuC family MQE22_00655 PF02401 LytB protein MQE22_00660 PF04452 RNA methyltransferase MQE22_00665 PF00459 Inositol monophosphatase family MQE22_00670 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded MQE22_00675 PF00456 Transketolase, thiamine diphosphate binding domain MQE22_00675 PF02780 Transketolase, C-terminal domain MQE22_00675 PF02779 Transketolase, pyrimidine binding domain MQE22_00680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MQE22_00680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MQE22_00685 PF00162 Phosphoglycerate kinase MQE22_00690 PF00224 Pyruvate kinase, barrel domain MQE22_00690 PF02887 Pyruvate kinase, alpha/beta domain MQE22_00695 PF01116 Fructose-bisphosphate aldolase class-II MQE22_00700 PF00834 Ribulose-phosphate 3 epimerase family MQE22_00705 PF13419 Haloacid dehalogenase-like hydrolase MQE22_00710 PF04715 Anthranilate synthase component I, N terminal region MQE22_00710 PF00425 chorismate binding enzyme MQE22_00715 PF00117 Glutamine amidotransferase class-I MQE22_00720 PF02885 Glycosyl transferase family, helical bundle domain MQE22_00720 PF00591 Glycosyl transferase family, a/b domain MQE22_00725 PF00218 Indole-3-glycerol phosphate synthase MQE22_00730 PF02566 OsmC-like protein MQE22_00735 PF02082 Transcriptional regulator MQE22_00740 PF03232 Ubiquinone biosynthesis protein COQ7 MQE22_00750 PF02129 X-Pro dipeptidyl-peptidase (S15 family) MQE22_00755 PF00005 ABC transporter MQE22_00760 PF01061 ABC-2 type transporter MQE22_00770 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system MQE22_00800 PF00114 Pilin (bacterial filament) MQE22_00800 PF07963 Prokaryotic N-terminal methylation motif MQE22_00820 PF02634 FdhD/NarQ family MQE22_00825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MQE22_00825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MQE22_00830 PF01678 Diaminopimelate epimerase MQE22_00845 PF02899 Phage integrase, N-terminal SAM-like domain MQE22_00845 PF00589 Phage integrase family MQE22_00850 PF00227 Proteasome subunit MQE22_00855 PF07724 AAA domain (Cdc48 subfamily) MQE22_00855 PF00004 ATPase family associated with various cellular activities (AAA) MQE22_00860 PF00924 Mechanosensitive ion channel MQE22_00860 PF12795 Mechanosensitive ion channel porin domain MQE22_00860 PF12794 Mechanosensitive ion channel inner membrane domain 1 MQE22_00870 PF04545 Sigma-70, region 4 MQE22_00870 PF04542 Sigma-70 region 2 MQE22_00875 PF18075 FtsX extracellular domain MQE22_00880 PF00005 ABC transporter MQE22_00885 PF02881 SRP54-type protein, helical bundle domain MQE22_00885 PF00448 SRP54-type protein, GTPase domain MQE22_00895 PF01467 Cytidylyltransferase-like MQE22_00900 PF00037 4Fe-4S binding domain MQE22_00905 PF00350 Dynamin family MQE22_00910 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MQE22_00910 PF06827 Zinc finger found in FPG and IleRS MQE22_00910 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MQE22_00915 PF17827 PrmC N-terminal domain MQE22_00915 PF13847 Methyltransferase domain MQE22_00920 PF03462 PCRF domain MQE22_00920 PF00472 RF-1 domain MQE22_00925 PF01488 Shikimate / quinate 5-dehydrogenase MQE22_00925 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MQE22_00925 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MQE22_00935 PF03550 Outer membrane lipoprotein LolB MQE22_00940 PF00288 GHMP kinases N terminal domain MQE22_00940 PF08544 GHMP kinases C terminal MQE22_00950 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MQE22_00950 PF14572 Phosphoribosyl synthetase-associated domain MQE22_00960 PF00905 Penicillin binding protein transpeptidase domain MQE22_00960 PF00912 Transglycosylase MQE22_00960 PF17092 Penicillin-binding protein OB-like domain MQE22_00965 PF00768 D-alanyl-D-alanine carboxypeptidase MQE22_00965 PF07943 Penicillin-binding protein 5, C-terminal domain MQE22_00970 PF00342 Phosphoglucose isomerase MQE22_00975 PF01654 Cytochrome bd terminal oxidase subunit I MQE22_00980 PF02322 Cytochrome bd terminal oxidase subunit II MQE22_00995 PF00679 Elongation factor G C-terminus MQE22_00995 PF03144 Elongation factor Tu domain 2 MQE22_00995 PF00009 Elongation factor Tu GTP binding domain MQE22_01000 PF08241 Methyltransferase domain MQE22_01005 PF04379 ApaG domain MQE22_01010 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MQE22_01010 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MQE22_01010 PF06827 Zinc finger found in FPG and IleRS MQE22_01020 PF03951 Glutamine synthetase, beta-Grasp domain MQE22_01020 PF00120 Glutamine synthetase, catalytic domain MQE22_01030 PF01975 Survival protein SurE MQE22_01040 PF04545 Sigma-70, region 4 MQE22_01040 PF04539 Sigma-70 region 3 MQE22_01040 PF04542 Sigma-70 region 2 MQE22_01040 PF00140 Sigma-70 factor, region 1.2 MQE22_01045 PF04430 Protein of unknown function (DUF498/DUF598) MQE22_01050 PF00155 Aminotransferase class I and II MQE22_01055 PF03447 Homoserine dehydrogenase, NAD binding domain MQE22_01055 PF00742 Homoserine dehydrogenase MQE22_01055 PF01842 ACT domain MQE22_01060 PF00291 Pyridoxal-phosphate dependent enzyme MQE22_01070 PF01368 DHH family MQE22_01070 PF02272 DHHA1 domain MQE22_01070 PF17768 RecJ OB domain MQE22_01075 PF00403 Heavy-metal-associated domain MQE22_01080 PF07690 Major Facilitator Superfamily MQE22_01085 PF00141 Peroxidase MQE22_01090 PF00384 Molybdopterin oxidoreductase MQE22_01100 PF08240 Alcohol dehydrogenase GroES-like domain MQE22_01100 PF00107 Zinc-binding dehydrogenase MQE22_01105 PF00756 Putative esterase MQE22_01115 PF01336 OB-fold nucleic acid binding domain MQE22_01115 PF00152 tRNA synthetases class II (D, K and N) MQE22_01120 PF12704 MacB-like periplasmic core domain MQE22_01120 PF02687 FtsX-like permease family MQE22_01125 PF00005 ABC transporter MQE22_01135 PF03772 Competence protein MQE22_01135 PF00753 Metallo-beta-lactamase superfamily MQE22_01140 PF01618 MotA/TolQ/ExbB proton channel family MQE22_01145 PF02472 Biopolymer transport protein ExbD/TolR MQE22_01160 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MQE22_01165 PF03966 Trm112p-like protein MQE22_01170 PF02348 Cytidylyltransferase MQE22_01175 PF00719 Inorganic pyrophosphatase MQE22_01185 PF02861 Clp amino terminal domain, pathogenicity island component MQE22_01185 PF10431 C-terminal, D2-small domain, of ClpB protein MQE22_01185 PF07724 AAA domain (Cdc48 subfamily) MQE22_01185 PF17871 AAA lid domain MQE22_01185 PF00004 ATPase family associated with various cellular activities (AAA) MQE22_01190 PF02617 ATP-dependent Clp protease adaptor protein ClpS MQE22_01205 PF13180 PDZ domain MQE22_01205 PF03572 Peptidase family S41 MQE22_01210 PF01551 Peptidase family M23 MQE22_01210 PF01476 LysM domain MQE22_01215 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MQE22_01215 PF01676 Metalloenzyme superfamily MQE22_01220 PF00343 Carbohydrate phosphorylase MQE22_01230 PF11455 Protein of unknown function (DUF3018) MQE22_01240 PF00294 pfkB family carbohydrate kinase MQE22_01250 PF02773 S-adenosylmethionine synthetase, C-terminal domain MQE22_01250 PF02772 S-adenosylmethionine synthetase, central domain MQE22_01250 PF00438 S-adenosylmethionine synthetase, N-terminal domain MQE22_01255 PF05221 S-adenosyl-L-homocysteine hydrolase MQE22_01255 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MQE22_01260 PF02219 Methylenetetrahydrofolate reductase MQE22_01265 PF00485 Phosphoribulokinase / Uridine kinase family MQE22_01315 PF01370 NAD dependent epimerase/dehydratase family MQE22_01320 PF16363 GDP-mannose 4,6 dehydratase MQE22_01325 PF01370 NAD dependent epimerase/dehydratase family MQE22_01330 PF00155 Aminotransferase class I and II MQE22_01335 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_01335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE22_01340 PF00689 Cation transporting ATPase, C-terminus MQE22_01340 PF00690 Cation transporter/ATPase, N-terminus MQE22_01345 PF02397 Bacterial sugar transferase MQE22_01355 PF02563 Polysaccharide biosynthesis/export protein MQE22_01355 PF10531 SLBB domain MQE22_01355 PF18412 Outer-membrane lipoprotein Wza C-terminal domain MQE22_01360 PF02706 Chain length determinant protein MQE22_01360 PF13807 G-rich domain on putative tyrosine kinase MQE22_01360 PF13614 AAA domain MQE22_01395 PF00535 Glycosyl transferase family 2 MQE22_01400 PF13439 Glycosyltransferase Family 4 MQE22_01400 PF00534 Glycosyl transferases group 1 MQE22_01405 PF13439 Glycosyltransferase Family 4 MQE22_01405 PF00534 Glycosyl transferases group 1 MQE22_01410 PF00132 Bacterial transferase hexapeptide (six repeats) MQE22_01415 PF13579 Glycosyl transferase 4-like domain MQE22_01415 PF00534 Glycosyl transferases group 1 MQE22_01425 PF01370 NAD dependent epimerase/dehydratase family MQE22_01430 PF16363 GDP-mannose 4,6 dehydratase MQE22_01435 PF16363 GDP-mannose 4,6 dehydratase MQE22_01455 PF00271 Helicase conserved C-terminal domain MQE22_01455 PF00270 DEAD/DEAH box helicase MQE22_01455 PF03880 DbpA RNA binding domain MQE22_01460 PF00313 'Cold-shock' DNA-binding domain MQE22_01480 PF00535 Glycosyl transferase family 2 MQE22_01510 PF00158 Sigma-54 interaction domain MQE22_01510 PF02954 Bacterial regulatory protein, Fis family MQE22_01510 PF00072 Response regulator receiver domain MQE22_01515 PF00271 Helicase conserved C-terminal domain MQE22_01515 PF17764 3′ DNA-binding domain (3′BD) MQE22_01515 PF18074 Primosomal protein N C-terminal domain MQE22_01515 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MQE22_01515 PF00270 DEAD/DEAH box helicase MQE22_01520 PF01040 UbiA prenyltransferase family MQE22_01530 PF00398 Ribosomal RNA adenine dimethylase MQE22_01535 PF00483 Nucleotidyl transferase MQE22_01545 PF09094 Domain of unknown function (DUF1925) MQE22_01545 PF09095 Domain of unknown function (DUF1926) MQE22_01545 PF03065 Glycosyl hydrolase family 57 MQE22_01550 PF00480 ROK family MQE22_01555 PF01177 Asp/Glu/Hydantoin racemase MQE22_01565 PF04286 Protein of unknown function (DUF445) MQE22_01570 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MQE22_01575 PF00919 Uncharacterized protein family UPF0004 MQE22_01575 PF01938 TRAM domain MQE22_01575 PF04055 Radical SAM superfamily MQE22_01580 PF02562 PhoH-like protein MQE22_01585 PF02130 Uncharacterized protein family UPF0054 MQE22_01590 PF00571 CBS domain MQE22_01590 PF03471 Transporter associated domain MQE22_01595 PF00795 Carbon-nitrogen hydrolase MQE22_01625 PF05506 Domain of unknown function (DUF756) MQE22_01625 PF04185 Phosphoesterase family MQE22_01635 PF04143 Sulphur transport MQE22_01640 PF00753 Metallo-beta-lactamase superfamily MQE22_01645 PF01343 Peptidase family S49 MQE22_01660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MQE22_01660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MQE22_01660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MQE22_01660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MQE22_01700 PF00873 AcrB/AcrD/AcrF family MQE22_01710 PF02978 Signal peptide binding domain MQE22_01710 PF02881 SRP54-type protein, helical bundle domain MQE22_01710 PF00448 SRP54-type protein, GTPase domain MQE22_01715 PF00886 Ribosomal protein S16 MQE22_01720 PF01782 RimM N-terminal domain MQE22_01720 PF05239 PRC-barrel domain MQE22_01725 PF01746 tRNA (Guanine-1)-methyltransferase MQE22_01730 PF01245 Ribosomal protein L19 MQE22_01740 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MQE22_01740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MQE22_01745 PF00589 Phage integrase family MQE22_01745 PF02899 Phage integrase, N-terminal SAM-like domain MQE22_01750 PF13180 PDZ domain MQE22_01755 PF00085 Thioredoxin MQE22_01770 PF00464 Serine hydroxymethyltransferase MQE22_01775 PF03477 ATP cone domain MQE22_01780 PF01872 RibD C-terminal domain MQE22_01780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MQE22_01785 PF00677 Lumazine binding domain MQE22_01790 PF00925 GTP cyclohydrolase II MQE22_01790 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MQE22_01795 PF00885 6,7-dimethyl-8-ribityllumazine synthase MQE22_01800 PF01029 NusB family MQE22_01815 PF03109 ABC1 family MQE22_01820 PF00691 OmpA family MQE22_01820 PF04972 BON domain MQE22_01840 PF03144 Elongation factor Tu domain 2 MQE22_01840 PF00009 Elongation factor Tu GTP binding domain MQE22_01840 PF03143 Elongation factor Tu C-terminal domain MQE22_01855 PF00467 KOW motif MQE22_01855 PF02357 Transcription termination factor nusG MQE22_01860 PF00298 Ribosomal protein L11, RNA binding domain MQE22_01860 PF03946 Ribosomal protein L11, N-terminal domain MQE22_01865 PF00687 Ribosomal protein L1p/L10e family MQE22_01870 PF00466 Ribosomal protein L10 MQE22_01875 PF00542 Ribosomal protein L7/L12 C-terminal domain MQE22_01875 PF16320 Ribosomal protein L7/L12 dimerisation domain MQE22_01880 PF04560 RNA polymerase Rpb2, domain 7 MQE22_01880 PF00562 RNA polymerase Rpb2, domain 6 MQE22_01880 PF10385 RNA polymerase beta subunit external 1 domain MQE22_01880 PF04565 RNA polymerase Rpb2, domain 3 MQE22_01880 PF04561 RNA polymerase Rpb2, domain 2 MQE22_01880 PF04563 RNA polymerase beta subunit MQE22_01885 PF00623 RNA polymerase Rpb1, domain 2 MQE22_01885 PF04998 RNA polymerase Rpb1, domain 5 MQE22_01885 PF04997 RNA polymerase Rpb1, domain 1 MQE22_01885 PF04983 RNA polymerase Rpb1, domain 3 MQE22_01885 PF05000 RNA polymerase Rpb1, domain 4 MQE22_01890 PF00164 Ribosomal protein S12/S23 MQE22_01895 PF00177 Ribosomal protein S7p/S5e MQE22_01900 PF03764 Elongation factor G, domain IV MQE22_01900 PF00679 Elongation factor G C-terminus MQE22_01900 PF14492 Elongation Factor G, domain II MQE22_01900 PF00009 Elongation factor Tu GTP binding domain MQE22_01900 PF03144 Elongation factor Tu domain 2 MQE22_01905 PF00009 Elongation factor Tu GTP binding domain MQE22_01905 PF03144 Elongation factor Tu domain 2 MQE22_01905 PF03143 Elongation factor Tu C-terminal domain MQE22_01910 PF00338 Ribosomal protein S10p/S20e MQE22_01915 PF00297 Ribosomal protein L3 MQE22_01920 PF00573 Ribosomal protein L4/L1 family MQE22_01925 PF00276 Ribosomal protein L23 MQE22_01930 PF03947 Ribosomal Proteins L2, C-terminal domain MQE22_01930 PF00181 Ribosomal Proteins L2, RNA binding domain MQE22_01935 PF00203 Ribosomal protein S19 MQE22_01940 PF00237 Ribosomal protein L22p/L17e MQE22_01945 PF07650 KH domain MQE22_01945 PF00189 Ribosomal protein S3, C-terminal domain MQE22_01950 PF00252 Ribosomal protein L16p/L10e MQE22_01955 PF00831 Ribosomal L29 protein MQE22_01960 PF00366 Ribosomal protein S17 MQE22_01965 PF00238 Ribosomal protein L14p/L23e MQE22_01970 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MQE22_01970 PF00467 KOW motif MQE22_01975 PF00281 Ribosomal protein L5 MQE22_01975 PF00673 ribosomal L5P family C-terminus MQE22_01980 PF00253 Ribosomal protein S14p/S29e MQE22_01985 PF00410 Ribosomal protein S8 MQE22_01990 PF00347 Ribosomal protein L6 MQE22_01995 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MQE22_02000 PF00333 Ribosomal protein S5, N-terminal domain MQE22_02000 PF03719 Ribosomal protein S5, C-terminal domain MQE22_02005 PF00327 Ribosomal protein L30p/L7e MQE22_02010 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MQE22_02015 PF00344 SecY translocase MQE22_02020 PF05191 Adenylate kinase, active site lid MQE22_02025 PF01176 Translation initiation factor 1A / IF-1 MQE22_02030 PF00444 Ribosomal protein L36 MQE22_02035 PF00416 Ribosomal protein S13/S18 MQE22_02040 PF00411 Ribosomal protein S11 MQE22_02045 PF00163 Ribosomal protein S4/S9 N-terminal domain MQE22_02045 PF01479 S4 domain MQE22_02050 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MQE22_02050 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MQE22_02050 PF01000 RNA polymerase Rpb3/RpoA insert domain MQE22_02055 PF01196 Ribosomal protein L17 MQE22_02060 PF17755 UvrA DNA-binding domain MQE22_02060 PF17760 UvrA interaction domain MQE22_02065 PF00436 Single-strand binding protein family MQE22_02070 PF00563 EAL domain MQE22_02070 PF00990 Diguanylate cyclase, GGDEF domain MQE22_02070 PF03707 Bacterial signalling protein N terminal repeat MQE22_02075 PF18073 Rubredoxin metal binding domain MQE22_02080 PF00842 Alanine racemase, C-terminal domain MQE22_02080 PF01168 Alanine racemase, N-terminal domain MQE22_02105 PF04403 Paraquat-inducible protein A MQE22_02110 PF03796 DnaB-like helicase C terminal domain MQE22_02110 PF00772 DnaB-like helicase N terminal domain MQE22_02115 PF01281 Ribosomal protein L9, N-terminal domain MQE22_02115 PF03948 Ribosomal protein L9, C-terminal domain MQE22_02120 PF01084 Ribosomal protein S18 MQE22_02125 PF01250 Ribosomal protein S6 MQE22_02130 PF00933 Glycosyl hydrolase family 3 N terminal domain MQE22_02135 PF13520 Amino acid permease MQE22_02145 PF05958 tRNA (Uracil-5-)-methyltransferase MQE22_02145 PF01938 TRAM domain MQE22_02160 PF00291 Pyridoxal-phosphate dependent enzyme MQE22_02170 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MQE22_02175 PF01145 SPFH domain / Band 7 family MQE22_02175 PF16200 C-terminal region of band_7 MQE22_02185 PF00128 Alpha amylase, catalytic domain MQE22_02185 PF02806 Alpha amylase, C-terminal all-beta domain MQE22_02185 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MQE22_02190 PF00902 Sec-independent protein translocase protein (TatC) MQE22_02195 PF02416 mttA/Hcf106 family MQE22_02200 PF02416 mttA/Hcf106 family MQE22_02205 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MQE22_02205 PF01502 Phosphoribosyl-AMP cyclohydrolase MQE22_02210 PF00977 Histidine biosynthesis protein MQE22_02215 PF00977 Histidine biosynthesis protein MQE22_02220 PF00117 Glutamine amidotransferase class-I MQE22_02225 PF00475 Imidazoleglycerol-phosphate dehydratase MQE22_02230 PF00155 Aminotransferase class I and II MQE22_02235 PF00815 Histidinol dehydrogenase MQE22_02240 PF01634 ATP phosphoribosyltransferase MQE22_02245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MQE22_02250 PF00462 Glutaredoxin MQE22_02255 PF01722 BolA-like protein MQE22_02260 PF01061 ABC-2 type transporter MQE22_02265 PF00639 PPIC-type PPIASE domain MQE22_02265 PF09312 SurA N-terminal domain MQE22_02270 PF04453 LPS transport system D MQE22_02275 PF01636 Phosphotransferase enzyme family MQE22_02280 PF00483 Nucleotidyl transferase MQE22_02295 PF00571 CBS domain MQE22_02295 PF01380 SIS domain MQE22_02315 PF00005 ABC transporter MQE22_02320 PF00309 Sigma-54 factor, Activator interacting domain (AID) MQE22_02320 PF04963 Sigma-54 factor, core binding domain MQE22_02320 PF04552 Sigma-54, DNA binding domain MQE22_02325 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MQE22_02330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MQE22_02335 PF02603 HPr Serine kinase N terminus MQE22_02335 PF07475 HPr Serine kinase C-terminal domain MQE22_02340 PF03668 P-loop ATPase protein family MQE22_02350 PF00923 Transaldolase/Fructose-6-phosphate aldolase MQE22_02360 PF01476 LysM domain MQE22_02360 PF01464 Transglycosylase SLT domain MQE22_02365 PF00749 tRNA synthetases class I (E and Q), catalytic domain MQE22_02370 PF00330 Aconitase family (aconitate hydratase) MQE22_02375 PF00180 Isocitrate/isopropylmalate dehydrogenase MQE22_02380 PF00549 CoA-ligase MQE22_02380 PF08442 ATP-grasp domain MQE22_02390 PF02629 CoA binding domain MQE22_02390 PF00549 CoA-ligase MQE22_02395 PF00795 Carbon-nitrogen hydrolase MQE22_02395 PF02540 NAD synthase MQE22_02400 PF00543 Nitrogen regulatory protein P-II MQE22_02405 PF13525 Outer membrane lipoprotein MQE22_02410 PF00849 RNA pseudouridylate synthase MQE22_02415 PF02578 Multi-copper polyphenol oxidoreductase laccase MQE22_02420 PF03079 ARD/ARD' family MQE22_02425 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain MQE22_02425 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain MQE22_02435 PF00596 Class II Aldolase and Adducin N-terminal domain MQE22_02445 PF01327 Polypeptide deformylase MQE22_02485 PF00158 Sigma-54 interaction domain MQE22_02485 PF01590 GAF domain MQE22_02485 PF02954 Bacterial regulatory protein, Fis family MQE22_02495 PF08502 LeuA allosteric (dimerisation) domain MQE22_02495 PF00682 HMGL-like MQE22_02510 PF01510 N-acetylmuramoyl-L-alanine amidase MQE22_02520 PF02677 Epoxyqueuosine reductase QueH MQE22_02525 PF01329 Pterin 4 alpha carbinolamine dehydratase MQE22_02545 PF18030 RimK PreATP-grasp domain MQE22_02545 PF08443 RimK-like ATP-grasp domain MQE22_02550 PF01553 Acyltransferase MQE22_02560 PF02092 Glycyl-tRNA synthetase beta subunit MQE22_02565 PF02091 Glycyl-tRNA synthetase alpha subunit MQE22_02610 PF04055 Radical SAM superfamily MQE22_02610 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MQE22_02615 PF03099 Biotin/lipoate A/B protein ligase family MQE22_02620 PF04359 Protein of unknown function (DUF493) MQE22_02625 PF07943 Penicillin-binding protein 5, C-terminal domain MQE22_02625 PF00768 D-alanyl-D-alanine carboxypeptidase MQE22_02630 PF01098 Cell cycle protein MQE22_02635 PF04093 rod shape-determining protein MreD MQE22_02650 PF02872 5'-nucleotidase, C-terminal domain MQE22_02650 PF00149 Calcineurin-like phosphoesterase MQE22_02675 PF00034 Cytochrome c MQE22_02675 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MQE22_02675 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP MQE22_02680 PF00158 Sigma-54 interaction domain MQE22_02680 PF02954 Bacterial regulatory protein, Fis family MQE22_02680 PF00072 Response regulator receiver domain MQE22_02685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_02685 PF00672 HAMP domain MQE22_02685 PF00512 His Kinase A (phospho-acceptor) domain MQE22_02685 PF00989 PAS fold MQE22_02695 PF01967 MoaC family MQE22_02705 PF00384 Molybdopterin oxidoreductase MQE22_02705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MQE22_02705 PF01568 Molydopterin dinucleotide binding domain MQE22_02710 PF13247 4Fe-4S dicluster domain MQE22_02710 PF12800 4Fe-4S binding domain MQE22_02720 PF04055 Radical SAM superfamily MQE22_02720 PF06463 Molybdenum Cofactor Synthesis C MQE22_02725 PF00581 Rhodanese-like domain MQE22_02730 PF01206 Sulfurtransferase TusA MQE22_02735 PF13686 DsrE/DsrF/DrsH-like family MQE22_02750 PF01593 Flavin containing amine oxidoreductase MQE22_02765 PF02754 Cysteine-rich domain MQE22_02770 PF01597 Glycine cleavage H-protein MQE22_02780 PF01597 Glycine cleavage H-protein MQE22_02790 PF03099 Biotin/lipoate A/B protein ligase family MQE22_02795 PF01494 FAD binding domain MQE22_02835 PF07728 AAA domain (dynein-related subfamily) MQE22_02835 PF08406 CbbQ/NirQ/NorQ C-terminal MQE22_02845 PF00850 Histone deacetylase domain MQE22_02860 PF03466 LysR substrate binding domain MQE22_02860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_02875 PF09335 SNARE associated Golgi protein MQE22_02880 PF05656 Protein of unknown function (DUF805) MQE22_02895 PF00877 NlpC/P60 family MQE22_02900 PF01578 Cytochrome C assembly protein MQE22_02910 PF04851 Type III restriction enzyme, res subunit MQE22_02910 PF13307 Helicase C-terminal domain MQE22_02915 PF00814 Glycoprotease family MQE22_02925 PF16658 Class II release factor RF3, C-terminal domain MQE22_02925 PF00009 Elongation factor Tu GTP binding domain MQE22_02925 PF03144 Elongation factor Tu domain 2 MQE22_02940 PF14693 Ribosomal protein TL5, C-terminal domain MQE22_02940 PF01386 Ribosomal L25p family MQE22_02945 PF01195 Peptidyl-tRNA hydrolase MQE22_02950 PF01926 50S ribosome-binding GTPase MQE22_02950 PF06071 Protein of unknown function (DUF933) MQE22_02955 PF02082 Transcriptional regulator MQE22_02980 PF00293 NUDIX domain MQE22_02985 PF00293 NUDIX domain MQE22_02990 PF00849 RNA pseudouridylate synthase MQE22_02990 PF01479 S4 domain MQE22_02995 PF04371 Porphyromonas-type peptidyl-arginine deiminase MQE22_03000 PF01790 Prolipoprotein diacylglyceryl transferase MQE22_03005 PF13361 UvrD-like helicase C-terminal domain MQE22_03005 PF00580 UvrD/REP helicase N-terminal domain MQE22_03010 PF01649 Ribosomal protein S20 MQE22_03015 PF00905 Penicillin binding protein transpeptidase domain MQE22_03015 PF03717 Penicillin-binding Protein dimerisation domain MQE22_03035 PF01812 5-formyltetrahydrofolate cyclo-ligase family MQE22_03040 PF13277 YmdB-like protein MQE22_03070 PF00582 Universal stress protein family MQE22_03075 PF03129 Anticodon binding domain MQE22_03075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MQE22_03075 PF04073 Aminoacyl-tRNA editing domain MQE22_03095 PF05199 GMC oxidoreductase MQE22_03095 PF00732 GMC oxidoreductase MQE22_03105 PF09137 Glucodextranase, domain N MQE22_03105 PF00723 Glycosyl hydrolases family 15 MQE22_03110 PF00348 Polyprenyl synthetase MQE22_03125 PF00905 Penicillin binding protein transpeptidase domain MQE22_03125 PF03717 Penicillin-binding Protein dimerisation domain MQE22_03140 PF00005 ABC transporter MQE22_03140 PF16326 ABC transporter C-terminal domain MQE22_03140 PF12848 ABC transporter MQE22_03150 PF03167 Uracil DNA glycosylase superfamily MQE22_03155 PF01370 NAD dependent epimerase/dehydratase family MQE22_03160 PF00296 Luciferase-like monooxygenase MQE22_03170 PF00929 Exonuclease MQE22_03175 PF00486 Transcriptional regulatory protein, C terminal MQE22_03175 PF00072 Response regulator receiver domain MQE22_03190 PF02472 Biopolymer transport protein ExbD/TolR MQE22_03195 PF01618 MotA/TolQ/ExbB proton channel family MQE22_03200 PF00593 TonB dependent receptor MQE22_03200 PF07660 Secretin and TonB N terminus short domain MQE22_03200 PF07715 TonB-dependent Receptor Plug Domain MQE22_03210 PF03755 YicC-like family, N-terminal region MQE22_03210 PF08340 Domain of unknown function (DUF1732) MQE22_03215 PF00625 Guanylate kinase MQE22_03225 PF13291 ACT domain MQE22_03225 PF02824 TGS domain MQE22_03225 PF04607 Region found in RelA / SpoT proteins MQE22_03230 PF01042 Endoribonuclease L-PSP MQE22_03240 PF00270 DEAD/DEAH box helicase MQE22_03240 PF00271 Helicase conserved C-terminal domain MQE22_03240 PF17191 RecG wedge domain MQE22_03245 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system MQE22_03250 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system MQE22_03260 PF08448 PAS fold MQE22_03260 PF00990 Diguanylate cyclase, GGDEF domain MQE22_03265 PF01593 Flavin containing amine oxidoreductase MQE22_03270 PF01594 AI-2E family transporter MQE22_03280 PF02811 PHP domain MQE22_03285 PF01594 AI-2E family transporter MQE22_03295 PF00588 SpoU rRNA Methylase family MQE22_03295 PF08032 RNA 2'-O ribose methyltransferase substrate binding MQE22_03300 PF01026 TatD related DNase MQE22_03305 PF12706 Beta-lactamase superfamily domain MQE22_03305 PF03099 Biotin/lipoate A/B protein ligase family MQE22_03330 PF01565 FAD binding domain MQE22_03330 PF02913 FAD linked oxidases, C-terminal domain MQE22_03335 PF01565 FAD binding domain MQE22_03340 PF02754 Cysteine-rich domain MQE22_03340 PF13183 4Fe-4S dicluster domain MQE22_03345 PF02595 Glycerate kinase family MQE22_03360 PF01964 Radical SAM ThiC family MQE22_03360 PF13667 ThiC-associated domain MQE22_03375 PF02322 Cytochrome bd terminal oxidase subunit II MQE22_03380 PF01654 Cytochrome bd terminal oxidase subunit I MQE22_03390 PF02954 Bacterial regulatory protein, Fis family MQE22_03390 PF01590 GAF domain MQE22_03390 PF00158 Sigma-54 interaction domain MQE22_03400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE22_03400 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_03405 PF00155 Aminotransferase class I and II MQE22_03410 PF13439 Glycosyltransferase Family 4 MQE22_03430 PF01050 Mannose-6-phosphate isomerase MQE22_03430 PF00483 Nucleotidyl transferase MQE22_03445 PF00005 ABC transporter MQE22_03455 PF16363 GDP-mannose 4,6 dehydratase MQE22_03460 PF16363 GDP-mannose 4,6 dehydratase MQE22_03480 PF09820 Predicted AAA-ATPase MQE22_03480 PF08011 PD-(D/E)XK nuclease superfamily MQE22_03490 PF01925 Sulfite exporter TauE/SafE MQE22_03505 PF00654 Voltage gated chloride channel MQE22_03510 PF07690 Major Facilitator Superfamily MQE22_03515 PF00654 Voltage gated chloride channel MQE22_03520 PF18146 Damage-inducible protein CinA KH domain MQE22_03520 PF02464 Competence-damaged protein MQE22_03520 PF00994 Probable molybdopterin binding domain MQE22_03525 PF00551 Formyl transferase MQE22_03530 PF00586 AIR synthase related protein, N-terminal domain MQE22_03530 PF02769 AIR synthase related protein, C-terminal domain MQE22_03535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MQE22_03535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MQE22_03545 PF03631 Virulence factor BrkB MQE22_03555 PF01578 Cytochrome C assembly protein MQE22_03570 PF05140 ResB-like family MQE22_03580 PF00149 Calcineurin-like phosphoesterase MQE22_03580 PF02872 5'-nucleotidase, C-terminal domain MQE22_03595 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MQE22_03595 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MQE22_03600 PF06965 Na+/H+ antiporter 1 MQE22_03605 PF08264 Anticodon-binding domain of tRNA MQE22_03605 PF10458 Valyl tRNA synthetase tRNA binding arm MQE22_03605 PF00133 tRNA synthetases class I (I, L, M and V) MQE22_03620 PF02789 Cytosol aminopeptidase family, N-terminal domain MQE22_03620 PF00883 Cytosol aminopeptidase family, catalytic domain MQE22_03655 PF01491 Frataxin-like domain MQE22_03660 PF00570 HRDC domain MQE22_03660 PF16124 RecQ zinc-binding MQE22_03660 PF09382 RQC domain MQE22_03660 PF00271 Helicase conserved C-terminal domain MQE22_03660 PF00270 DEAD/DEAH box helicase MQE22_03670 PF00149 Calcineurin-like phosphoesterase MQE22_03680 PF02556 Preprotein translocase subunit SecB MQE22_03685 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MQE22_03685 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MQE22_03690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_03690 PF00512 His Kinase A (phospho-acceptor) domain MQE22_03695 PF00158 Sigma-54 interaction domain MQE22_03695 PF02954 Bacterial regulatory protein, Fis family MQE22_03695 PF00072 Response regulator receiver domain MQE22_03705 PF13249 Squalene-hopene cyclase N-terminal domain MQE22_03705 PF13243 Squalene-hopene cyclase C-terminal domain MQE22_03715 PF01370 NAD dependent epimerase/dehydratase family MQE22_03730 PF04794 YdjC-like protein MQE22_03750 PF06463 Molybdenum Cofactor Synthesis C MQE22_03750 PF04055 Radical SAM superfamily MQE22_03765 PF02686 Glu-tRNAGln amidotransferase C subunit MQE22_03770 PF01425 Amidase MQE22_03775 PF02934 GatB/GatE catalytic domain MQE22_03775 PF02637 GatB domain MQE22_03785 PF13286 Phosphohydrolase-associated domain MQE22_03785 PF01966 HD domain MQE22_03790 PF02511 Thymidylate synthase complementing protein MQE22_03795 PF01761 3-dehydroquinate synthase MQE22_03800 PF01202 Shikimate kinase MQE22_03805 PF11741 AMIN domain MQE22_03805 PF00263 Bacterial type II and III secretion system protein MQE22_03805 PF03958 Bacterial type II/III secretion system short domain MQE22_03805 PF07660 Secretin and TonB N terminus short domain MQE22_03825 PF11104 Type IV pilus assembly protein PilM; MQE22_03830 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MQE22_03835 PF01894 Uncharacterised protein family UPF0047 MQE22_03845 PF00488 MutS domain V MQE22_03845 PF01713 Smr domain MQE22_03850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MQE22_03850 PF00205 Thiamine pyrophosphate enzyme, central domain MQE22_03850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MQE22_03855 PF10369 Small subunit of acetolactate synthase MQE22_03860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MQE22_03860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MQE22_03865 PF02666 Phosphatidylserine decarboxylase MQE22_03870 PF01066 CDP-alcohol phosphatidyltransferase MQE22_03880 PF13335 Magnesium chelatase, subunit ChlI C-terminal MQE22_03880 PF01078 Magnesium chelatase, subunit ChlI MQE22_03885 PF04380 Membrane fusogenic activity MQE22_03890 PF01494 FAD binding domain MQE22_03895 PF01494 FAD binding domain MQE22_03905 PF10417 C-terminal domain of 1-Cys peroxiredoxin MQE22_03905 PF00578 AhpC/TSA family MQE22_03915 PF01207 Dihydrouridine synthase (Dus) MQE22_03925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_03925 PF03466 LysR substrate binding domain MQE22_03930 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain MQE22_03930 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain MQE22_03935 PF00101 Ribulose bisphosphate carboxylase, small chain MQE22_03960 PF00936 BMC domain MQE22_03965 PF00936 BMC domain MQE22_03970 PF00936 BMC domain MQE22_03995 PF00092 von Willebrand factor type A domain MQE22_04000 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MQE22_04000 PF00361 Proton-conducting membrane transporter MQE22_04010 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) MQE22_04020 PF08406 CbbQ/NirQ/NorQ C-terminal MQE22_04020 PF07728 AAA domain (dynein-related subfamily) MQE22_04050 PF03091 CutA1 divalent ion tolerance protein MQE22_04055 PF02683 Cytochrome C biogenesis protein transmembrane region MQE22_04055 PF11412 Disulphide bond corrector protein DsbC MQE22_04065 PF01063 Amino-transferase class IV MQE22_04070 PF03710 Glutamate-ammonia ligase adenylyltransferase MQE22_04070 PF08335 GlnD PII-uridylyltransferase MQE22_04085 PF01180 Dihydroorotate dehydrogenase MQE22_04090 PF01218 Coproporphyrinogen III oxidase MQE22_04095 PF01300 Telomere recombination MQE22_04100 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MQE22_04100 PF02843 Phosphoribosylglycinamide synthetase, C domain MQE22_04100 PF02844 Phosphoribosylglycinamide synthetase, N domain MQE22_04105 PF01808 AICARFT/IMPCHase bienzyme MQE22_04105 PF02142 MGS-like domain MQE22_04110 PF00156 Phosphoribosyl transferase domain MQE22_04110 PF09182 Bacterial purine repressor, N-terminal MQE22_04115 PF01747 ATP-sulfurylase MQE22_04115 PF14306 PUA-like domain MQE22_04125 PF00583 Acetyltransferase (GNAT) family MQE22_04130 PF13356 Arm DNA-binding domain MQE22_04130 PF00589 Phage integrase family MQE22_04150 PF02796 Helix-turn-helix domain of resolvase MQE22_04150 PF00239 Resolvase, N terminal domain MQE22_04185 PF01713 Smr domain MQE22_04185 PF00488 MutS domain V MQE22_04190 PF06912 Protein of unknown function (DUF1275) MQE22_04195 PF01565 FAD binding domain MQE22_04195 PF02913 FAD linked oxidases, C-terminal domain MQE22_04200 PF02569 Pantoate-beta-alanine ligase MQE22_04205 PF02548 Ketopantoate hydroxymethyltransferase MQE22_04210 PF01712 Deoxynucleoside kinase MQE22_04215 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MQE22_04220 PF01743 Poly A polymerase head domain MQE22_04225 PF12626 Polymerase A arginine-rich C-terminus MQE22_04225 PF01743 Poly A polymerase head domain MQE22_04225 PF12627 Probable RNA and SrmB- binding site of polymerase A MQE22_04230 PF05145 Transition state regulatory protein AbrB MQE22_04235 PF00571 CBS domain MQE22_04235 PF00478 IMP dehydrogenase / GMP reductase domain MQE22_04240 PF00958 GMP synthase C terminal domain MQE22_04240 PF02540 NAD synthase MQE22_04240 PF00117 Glutamine amidotransferase class-I MQE22_04270 PF00892 EamA-like transporter family MQE22_04275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE22_04280 PF01738 Dienelactone hydrolase family MQE22_04285 PF16925 Tetracyclin repressor-like, C-terminal domain MQE22_04285 PF00440 Bacterial regulatory proteins, tetR family MQE22_04290 PF01026 TatD related DNase MQE22_04295 PF00899 ThiF family MQE22_04310 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MQE22_04320 PF01022 Bacterial regulatory protein, arsR family MQE22_04325 PF02321 Outer membrane efflux protein MQE22_04330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE22_04335 PF00873 AcrB/AcrD/AcrF family MQE22_04345 PF00581 Rhodanese-like domain MQE22_04350 PF00462 Glutaredoxin MQE22_04355 PF00085 Thioredoxin MQE22_04360 PF00795 Carbon-nitrogen hydrolase MQE22_04370 PF06472 ABC transporter transmembrane region 2 MQE22_04370 PF00005 ABC transporter MQE22_04385 PF01252 Signal peptidase (SPase) II MQE22_04390 PF06827 Zinc finger found in FPG and IleRS MQE22_04390 PF08264 Anticodon-binding domain of tRNA MQE22_04390 PF00133 tRNA synthetases class I (I, L, M and V) MQE22_04395 PF06574 FAD synthetase MQE22_04395 PF01687 Riboflavin kinase MQE22_04400 PF03023 Lipid II flippase MurJ MQE22_04405 PF01464 Transglycosylase SLT domain MQE22_04415 PF00950 ABC 3 transport family MQE22_04420 PF00950 ABC 3 transport family MQE22_04425 PF00005 ABC transporter MQE22_04430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MQE22_04430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MQE22_04430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MQE22_04430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MQE22_04445 PF00672 HAMP domain MQE22_04445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MQE22_04445 PF05227 CHASE3 domain MQE22_04450 PF01584 CheW-like domain MQE22_04450 PF00072 Response regulator receiver domain MQE22_04480 PF01584 CheW-like domain MQE22_04480 PF02895 Signal transducing histidine kinase, homodimeric domain MQE22_04480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_04480 PF01627 Hpt domain MQE22_04480 PF00072 Response regulator receiver domain MQE22_04490 PF00072 Response regulator receiver domain MQE22_04500 PF00691 OmpA family MQE22_04500 PF13677 Membrane MotB of proton-channel complex MotA/MotB MQE22_04510 PF02623 FliW protein MQE22_04515 PF02599 Global regulator protein family MQE22_04535 PF00460 Flagella basal body rod protein MQE22_04540 PF00460 Flagella basal body rod protein MQE22_04540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MQE22_04545 PF03963 Flagellar hook capping protein - N-terminal region MQE22_04545 PF13860 FlgD Ig-like domain MQE22_04545 PF13861 FlgD Tudor-like domain MQE22_04550 PF07559 Flagellar basal body protein FlaE MQE22_04550 PF00460 Flagella basal body rod protein MQE22_04550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MQE22_04555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MQE22_04555 PF00460 Flagella basal body rod protein MQE22_04560 PF00460 Flagella basal body rod protein MQE22_04560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MQE22_04565 PF02107 Flagellar L-ring protein MQE22_04570 PF02119 Flagellar P-ring protein MQE22_04575 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MQE22_04575 PF10135 Rod binding protein MQE22_04585 PF00460 Flagella basal body rod protein MQE22_04585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MQE22_04590 PF00669 Bacterial flagellin N-terminal helical region MQE22_04595 PF00535 Glycosyl transferase family 2 MQE22_04605 PF00669 Bacterial flagellin N-terminal helical region MQE22_04605 PF00700 Bacterial flagellin C-terminal helical region MQE22_04615 PF07196 Flagellin hook IN motif MQE22_04615 PF07195 Flagellar hook-associated protein 2 C-terminus MQE22_04615 PF02465 Flagellar hook-associated protein 2 N-terminus MQE22_04630 PF06490 Flagellar regulatory protein FleQ MQE22_04630 PF02954 Bacterial regulatory protein, Fis family MQE22_04630 PF00158 Sigma-54 interaction domain MQE22_04635 PF00989 PAS fold MQE22_04635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_04635 PF00512 His Kinase A (phospho-acceptor) domain MQE22_04640 PF02954 Bacterial regulatory protein, Fis family MQE22_04640 PF00072 Response regulator receiver domain MQE22_04640 PF00158 Sigma-54 interaction domain MQE22_04645 PF02049 Flagellar hook-basal body complex protein FliE MQE22_04650 PF01514 Secretory protein of YscJ/FliF family MQE22_04650 PF08345 Flagellar M-ring protein C-terminal MQE22_04655 PF01706 FliG C-terminal domain MQE22_04655 PF14841 FliG middle domain MQE22_04655 PF14842 FliG N-terminal domain MQE22_04665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MQE22_04665 PF18269 T3SS EscN ATPase C-terminal domain MQE22_04680 PF02154 Flagellar motor switch protein FliM MQE22_04680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MQE22_04685 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MQE22_04690 PF04347 Flagellar biosynthesis protein, FliO MQE22_04695 PF00813 FliP family MQE22_04700 PF01313 Bacterial export proteins, family 3 MQE22_04705 PF01311 Bacterial export proteins, family 1 MQE22_04710 PF01312 FlhB HrpN YscU SpaS Family MQE22_04715 PF00771 FHIPEP family MQE22_04720 PF00448 SRP54-type protein, GTPase domain MQE22_04725 PF10609 NUBPL iron-transfer P-loop NTPase MQE22_04730 PF04539 Sigma-70 region 3 MQE22_04730 PF04545 Sigma-70, region 4 MQE22_04730 PF04542 Sigma-70 region 2 MQE22_04735 PF01618 MotA/TolQ/ExbB proton channel family MQE22_04740 PF02151 UvrB/uvrC motif MQE22_04740 PF00271 Helicase conserved C-terminal domain MQE22_04740 PF12344 Ultra-violet resistance protein B MQE22_04740 PF17757 UvrB interaction domain MQE22_04740 PF04851 Type III restriction enzyme, res subunit MQE22_04745 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MQE22_04750 PF01850 PIN domain MQE22_04755 PF08240 Alcohol dehydrogenase GroES-like domain MQE22_04755 PF00107 Zinc-binding dehydrogenase MQE22_04760 PF06418 CTP synthase N-terminus MQE22_04760 PF00117 Glutamine amidotransferase class-I MQE22_04765 PF00793 DAHP synthetase I family MQE22_04770 PF00113 Enolase, C-terminal TIM barrel domain MQE22_04770 PF03952 Enolase, N-terminal domain MQE22_04775 PF04977 Septum formation initiator MQE22_04780 PF09285 Elongation factor P, C-terminal MQE22_04780 PF08207 Elongation factor P (EF-P) KOW-like domain MQE22_04780 PF01132 Elongation factor P (EF-P) OB domain MQE22_04790 PF01541 GIY-YIG catalytic domain MQE22_04790 PF08459 UvrC Helix-hairpin-helix N-terminal MQE22_04790 PF02151 UvrB/uvrC motif MQE22_04795 PF01066 CDP-alcohol phosphatidyltransferase MQE22_04800 PF17946 RecC C-terminal domain MQE22_04805 PF12705 PD-(D/E)XK nuclease superfamily MQE22_04805 PF00580 UvrD/REP helicase N-terminal domain MQE22_04805 PF13361 UvrD-like helicase C-terminal domain MQE22_04810 PF13538 UvrD-like helicase C-terminal domain MQE22_04825 PF04349 Periplasmic glucan biosynthesis protein, MdoG MQE22_04835 PF00535 Glycosyl transferase family 2 MQE22_04845 PF16363 GDP-mannose 4,6 dehydratase MQE22_04850 PF04241 Protein of unknown function (DUF423) MQE22_04855 PF01343 Peptidase family S49 MQE22_04855 PF08496 Peptidase family S49 N-terminal MQE22_04860 PF02597 ThiS family MQE22_04865 PF02391 MoaE protein MQE22_04870 PF04461 Protein of unknown function (DUF520) MQE22_04880 PF01571 Aminomethyltransferase folate-binding domain MQE22_04880 PF08669 Glycine cleavage T-protein C-terminal barrel domain MQE22_04885 PF01597 Glycine cleavage H-protein MQE22_04890 PF02347 Glycine cleavage system P-protein MQE22_04895 PF02347 Glycine cleavage system P-protein MQE22_04900 PF07726 ATPase family associated with various cellular activities (AAA) MQE22_04900 PF17863 AAA lid domain MQE22_04910 PF11992 Domain of unknown function (DUF3488) MQE22_04910 PF13559 Domain of unknown function (DUF4129) MQE22_04910 PF01841 Transglutaminase-like superfamily MQE22_04915 PF00005 ABC transporter MQE22_04915 PF00664 ABC transporter transmembrane region MQE22_04920 PF11953 Domain of unknown function (DUF3470) MQE22_04920 PF00037 4Fe-4S binding domain MQE22_04935 PF01138 3' exoribonuclease family, domain 1 MQE22_04935 PF03725 3' exoribonuclease family, domain 2 MQE22_04940 PF01725 Ham1 family MQE22_04945 PF00140 Sigma-70 factor, region 1.2 MQE22_04945 PF04539 Sigma-70 region 3 MQE22_04945 PF04545 Sigma-70, region 4 MQE22_04945 PF04542 Sigma-70 region 2 MQE22_04950 PF01165 Ribosomal protein S21 MQE22_04960 PF00488 MutS domain V MQE22_04960 PF01713 Smr domain MQE22_04965 PF08275 DNA primase catalytic core, N-terminal domain MQE22_04965 PF13662 Toprim domain MQE22_04965 PF10410 DnaB-helicase binding domain of primase MQE22_04965 PF08278 DNA primase DnaG DnaB-binding MQE22_04965 PF01807 CHC2 zinc finger MQE22_04970 PF04545 Sigma-70, region 4 MQE22_04970 PF04546 Sigma-70, non-essential region MQE22_04970 PF04542 Sigma-70 region 2 MQE22_04970 PF00140 Sigma-70 factor, region 1.2 MQE22_04970 PF03979 Sigma-70 factor, region 1.1 MQE22_04970 PF04539 Sigma-70 region 3 MQE22_04990 PF00664 ABC transporter transmembrane region MQE22_04990 PF00005 ABC transporter MQE22_04995 PF00664 ABC transporter transmembrane region MQE22_04995 PF00005 ABC transporter MQE22_05005 PF01571 Aminomethyltransferase folate-binding domain MQE22_05015 PF00890 FAD binding domain MQE22_05015 PF02910 Fumarate reductase flavoprotein C-term MQE22_05020 PF04542 Sigma-70 region 2 MQE22_05020 PF08281 Sigma-70, region 4 MQE22_05030 PF13180 PDZ domain MQE22_05035 PF06421 GTP-binding protein LepA C-terminus MQE22_05035 PF00009 Elongation factor Tu GTP binding domain MQE22_05035 PF03144 Elongation factor Tu domain 2 MQE22_05035 PF00679 Elongation factor G C-terminus MQE22_05040 PF10502 Signal peptidase, peptidase S26 MQE22_05065 PF05690 Thiazole biosynthesis protein ThiG MQE22_05075 PF02875 Mur ligase family, glutamate ligase domain MQE22_05075 PF08245 Mur ligase middle domain MQE22_05075 PF01225 Mur ligase family, catalytic domain MQE22_05080 PF02441 Flavoprotein MQE22_05085 PF00005 ABC transporter MQE22_05090 PF02405 Permease MlaE MQE22_05105 PF00899 ThiF family MQE22_05120 PF12704 MacB-like periplasmic core domain MQE22_05120 PF02687 FtsX-like permease family MQE22_05125 PF00005 ABC transporter MQE22_05140 PF00118 TCP-1/cpn60 chaperonin family MQE22_05145 PF00166 Chaperonin 10 Kd subunit MQE22_05160 PF00482 Type II secretion system (T2SS), protein F MQE22_05170 PF00749 tRNA synthetases class I (E and Q), catalytic domain MQE22_05175 PF00586 AIR synthase related protein, N-terminal domain MQE22_05175 PF02769 AIR synthase related protein, C-terminal domain MQE22_05180 PF02464 Competence-damaged protein MQE22_05180 PF18146 Damage-inducible protein CinA KH domain MQE22_05180 PF00994 Probable molybdopterin binding domain MQE22_05185 PF00154 recA bacterial DNA recombination protein MQE22_05190 PF02631 RecX family MQE22_05195 PF02272 DHHA1 domain MQE22_05195 PF01411 tRNA synthetases class II (A) MQE22_05195 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MQE22_05220 PF07690 Major Facilitator Superfamily MQE22_05230 PF13193 AMP-binding enzyme C-terminal domain MQE22_05230 PF00501 AMP-binding enzyme MQE22_05230 PF16177 Acetyl-coenzyme A synthetase N-terminus MQE22_05255 PF11897 Protein of unknown function (DUF3417) MQE22_05255 PF00343 Carbohydrate phosphorylase MQE22_05260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE22_05260 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_05265 PF03952 Enolase, N-terminal domain MQE22_05265 PF00113 Enolase, C-terminal TIM barrel domain MQE22_05270 PF02887 Pyruvate kinase, alpha/beta domain MQE22_05270 PF00391 PEP-utilising enzyme, mobile domain MQE22_05270 PF00224 Pyruvate kinase, barrel domain MQE22_05280 PF00294 pfkB family carbohydrate kinase MQE22_05285 PF01515 Phosphate acetyl/butaryl transferase MQE22_05290 PF00083 Sugar (and other) transporter MQE22_05295 PF01566 Natural resistance-associated macrophage protein MQE22_05300 PF00873 AcrB/AcrD/AcrF family MQE22_05305 PF13533 Biotin-lipoyl like MQE22_05315 PF00072 Response regulator receiver domain MQE22_05315 PF00486 Transcriptional regulatory protein, C terminal MQE22_05320 PF00672 HAMP domain MQE22_05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_05320 PF00512 His Kinase A (phospho-acceptor) domain MQE22_05325 PF00083 Sugar (and other) transporter MQE22_05345 PF04264 YceI-like domain MQE22_05350 PF03358 NADPH-dependent FMN reductase MQE22_05365 PF00872 Transposase, Mutator family MQE22_05385 PF00872 Transposase, Mutator family MQE22_05410 PF00072 Response regulator receiver domain MQE22_05410 PF00486 Transcriptional regulatory protein, C terminal MQE22_05415 PF00512 His Kinase A (phospho-acceptor) domain MQE22_05415 PF02702 Osmosensitive K+ channel His kinase sensor domain MQE22_05415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_05415 PF13492 GAF domain MQE22_05415 PF13493 Domain of unknown function (DUF4118) MQE22_05425 PF03814 Potassium-transporting ATPase A subunit MQE22_05435 PF02669 K+-transporting ATPase, c chain MQE22_05445 PF00696 Amino acid kinase family MQE22_05445 PF01472 PUA domain MQE22_05470 PF00149 Calcineurin-like phosphoesterase MQE22_05475 PF00004 ATPase family associated with various cellular activities (AAA) MQE22_05475 PF05362 Lon protease (S16) C-terminal proteolytic domain MQE22_05475 PF02190 ATP-dependent protease La (LON) substrate-binding domain MQE22_05500 PF01597 Glycine cleavage H-protein MQE22_05515 PF00970 Oxidoreductase FAD-binding domain MQE22_05515 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE22_05515 PF00175 Oxidoreductase NAD-binding domain MQE22_05520 PF00970 Oxidoreductase FAD-binding domain MQE22_05520 PF00042 Globin MQE22_05520 PF00175 Oxidoreductase NAD-binding domain MQE22_05525 PF13545 Crp-like helix-turn-helix domain MQE22_05525 PF00027 Cyclic nucleotide-binding domain MQE22_05545 PF01609 Transposase DDE domain MQE22_05545 PF05598 Transposase domain (DUF772) MQE22_05550 PF03050 Transposase IS66 family MQE22_05550 PF13817 IS66 C-terminal element MQE22_05550 PF13007 Transposase C of IS166 homeodomain MQE22_05550 PF13005 zinc-finger binding domain of transposase IS66 MQE22_05560 PF00216 Bacterial DNA-binding protein MQE22_05565 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MQE22_05570 PF00374 Nickel-dependent hydrogenase MQE22_05570 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MQE22_05570 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MQE22_05575 PF00361 Proton-conducting membrane transporter MQE22_05585 PF00146 NADH dehydrogenase MQE22_05590 PF00361 Proton-conducting membrane transporter MQE22_05600 PF00092 von Willebrand factor type A domain MQE22_05605 PF07728 AAA domain (dynein-related subfamily) MQE22_05605 PF08406 CbbQ/NirQ/NorQ C-terminal MQE22_05610 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain MQE22_05610 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain MQE22_05615 PF03466 LysR substrate binding domain MQE22_05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_05620 PF09364 XFP N-terminal domain MQE22_05620 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase MQE22_05620 PF09363 XFP C-terminal domain MQE22_05625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MQE22_05625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MQE22_05630 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MQE22_05630 PF02896 PEP-utilising enzyme, TIM barrel domain MQE22_05630 PF00391 PEP-utilising enzyme, mobile domain MQE22_05640 PF00391 PEP-utilising enzyme, mobile domain MQE22_05640 PF02896 PEP-utilising enzyme, TIM barrel domain MQE22_05640 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MQE22_05645 PF02896 PEP-utilising enzyme, TIM barrel domain MQE22_05645 PF00391 PEP-utilising enzyme, mobile domain MQE22_05645 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MQE22_05655 PF00391 PEP-utilising enzyme, mobile domain MQE22_05655 PF02896 PEP-utilising enzyme, TIM barrel domain MQE22_05655 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MQE22_05670 PF07690 Major Facilitator Superfamily MQE22_05680 PF13520 Amino acid permease MQE22_05685 PF00689 Cation transporting ATPase, C-terminus MQE22_05685 PF00690 Cation transporter/ATPase, N-terminus MQE22_05715 PF00027 Cyclic nucleotide-binding domain MQE22_05715 PF00325 Bacterial regulatory proteins, crp family MQE22_05735 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system MQE22_05735 PF01381 Helix-turn-helix MQE22_05740 PF13817 IS66 C-terminal element MQE22_05740 PF13007 Transposase C of IS166 homeodomain MQE22_05740 PF13005 zinc-finger binding domain of transposase IS66 MQE22_05740 PF03050 Transposase IS66 family MQE22_05755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MQE22_05765 PF13195 Protein of unknown function (DUF4011) MQE22_05765 PF13195 Protein of unknown function (DUF4011) MQE22_05765 PF13087 AAA domain MQE22_05765 PF13086 AAA domain MQE22_05765 PF13086 AAA domain MQE22_05765 PF13087 AAA domain MQE22_05770 PF00589 Phage integrase family MQE22_05790 PF00510 Cytochrome c oxidase subunit III MQE22_05795 PF00115 Cytochrome C and Quinol oxidase polypeptide I MQE22_05800 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MQE22_05800 PF06481 COX Aromatic Rich Motif MQE22_05810 PF00083 Sugar (and other) transporter MQE22_05830 PF01618 MotA/TolQ/ExbB proton channel family MQE22_05835 PF02472 Biopolymer transport protein ExbD/TolR MQE22_05850 PF04185 Phosphoesterase family MQE22_05860 PF00392 Bacterial regulatory proteins, gntR family MQE22_05860 PF07702 UTRA domain MQE22_05875 PF07969 Amidohydrolase family MQE22_05880 PF00005 ABC transporter MQE22_05885 PF00005 ABC transporter MQE22_05890 PF06007 Phosphonate metabolism protein PhnJ MQE22_05895 PF05861 Bacterial phosphonate metabolism protein (PhnI) MQE22_05915 PF14489 QueF-like protein MQE22_05920 PF02463 RecF/RecN/SMC N terminal domain MQE22_05920 PF06470 SMC proteins Flexible Hinge Domain MQE22_05930 PF07690 Major Facilitator Superfamily MQE22_05935 PF02609 Exonuclease VII small subunit MQE22_05940 PF00348 Polyprenyl synthetase MQE22_05945 PF02780 Transketolase, C-terminal domain MQE22_05945 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MQE22_05945 PF02779 Transketolase, pyrimidine binding domain MQE22_05950 PF02649 Type I GTP cyclohydrolase folE2 MQE22_05955 PF01264 Chorismate synthase MQE22_05960 PF12832 MFS_1 like family MQE22_05965 PF00004 ATPase family associated with various cellular activities (AAA) MQE22_05965 PF07724 AAA domain (Cdc48 subfamily) MQE22_05965 PF17871 AAA lid domain MQE22_05965 PF02861 Clp amino terminal domain, pathogenicity island component MQE22_05965 PF10431 C-terminal, D2-small domain, of ClpB protein MQE22_05970 PF13098 Thioredoxin-like domain MQE22_05975 PF11940 Domain of unknown function (DUF3458) Ig-like fold MQE22_05975 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MQE22_05975 PF01433 Peptidase family M1 domain MQE22_05995 PF13090 Polyphosphate kinase C-terminal domain 2 MQE22_05995 PF17941 Polyphosphate kinase C-terminal domain 1 MQE22_05995 PF13089 Polyphosphate kinase N-terminal domain MQE22_05995 PF02503 Polyphosphate kinase middle domain MQE22_06000 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MQE22_06000 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MQE22_06005 PF00474 Sodium:solute symporter family MQE22_06010 PF11755 Protein of unknown function (DUF3311) MQE22_06015 PF04293 SpoVR like protein MQE22_06020 PF04285 Protein of unknown function (DUF444) MQE22_06025 PF08298 PrkA AAA domain MQE22_06025 PF06798 PrkA serine protein kinase C-terminal domain MQE22_06045 PF00005 ABC transporter MQE22_06050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE22_06060 PF01451 Low molecular weight phosphotyrosine protein phosphatase MQE22_06070 PF02040 Arsenical pump membrane protein MQE22_06085 PF12169 DNA polymerase III subunits gamma and tau domain III MQE22_06085 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MQE22_06085 PF12170 DNA polymerase III tau subunit V interacting with alpha MQE22_06090 PF02575 YbaB/EbfC DNA-binding family MQE22_06095 PF02132 RecR protein MQE22_06095 PF13662 Toprim domain MQE22_06100 PF00909 Ammonium Transporter Family MQE22_06105 PF03853 YjeF-related protein N-terminus MQE22_06105 PF01256 Carbohydrate kinase MQE22_06110 PF00202 Aminotransferase class-III MQE22_06115 PF03448 MgtE intracellular N domain MQE22_06115 PF01769 Divalent cation transporter MQE22_06115 PF00571 CBS domain MQE22_06120 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MQE22_06125 PF08676 MutL C terminal dimerisation domain MQE22_06125 PF01119 DNA mismatch repair protein, C-terminal domain MQE22_06135 PF02321 Outer membrane efflux protein MQE22_06140 PF04632 Fusaric acid resistance protein family MQE22_06150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE22_06150 PF00529 HlyD membrane-fusion protein of T1SS MQE22_06155 PF00035 Double-stranded RNA binding motif MQE22_06155 PF14622 Ribonuclease-III-like MQE22_06160 PF07650 KH domain MQE22_06160 PF01926 50S ribosome-binding GTPase MQE22_06165 PF02565 Recombination protein O C terminal MQE22_06165 PF11967 Recombination protein O N terminal MQE22_06170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MQE22_06175 PF01648 4'-phosphopantetheinyl transferase superfamily MQE22_06180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MQE22_06180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MQE22_06180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MQE22_06185 PF00294 pfkB family carbohydrate kinase MQE22_06185 PF01467 Cytidylyltransferase-like MQE22_06190 PF01171 PP-loop family MQE22_06195 PF01430 Hsp33 protein MQE22_06205 PF02321 Outer membrane efflux protein MQE22_06225 PF04715 Anthranilate synthase component I, N terminal region MQE22_06225 PF00425 chorismate binding enzyme MQE22_06235 PF00282 Pyridoxal-dependent decarboxylase conserved domain MQE22_06265 PF05114 Protein of unknown function (DUF692) MQE22_06280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_06280 PF03466 LysR substrate binding domain MQE22_06285 PF02678 Pirin MQE22_06285 PF05726 Pirin C-terminal cupin domain MQE22_06290 PF00857 Isochorismatase family MQE22_06295 PF03976 Polyphosphate kinase 2 (PPK2) MQE22_06300 PF01590 GAF domain MQE22_06300 PF02954 Bacterial regulatory protein, Fis family MQE22_06300 PF00158 Sigma-54 interaction domain MQE22_06330 PF00873 AcrB/AcrD/AcrF family MQE22_06355 PF03707 Bacterial signalling protein N terminal repeat MQE22_06355 PF00990 Diguanylate cyclase, GGDEF domain MQE22_06355 PF00563 EAL domain MQE22_06360 PF00873 AcrB/AcrD/AcrF family MQE22_06365 PF13533 Biotin-lipoyl like MQE22_06375 PF00155 Aminotransferase class I and II MQE22_06385 PF06969 HemN C-terminal domain MQE22_06385 PF04055 Radical SAM superfamily MQE22_06395 PF00849 RNA pseudouridylate synthase MQE22_06395 PF01479 S4 domain MQE22_06415 PF13570 PQQ-like domain MQE22_06415 PF13360 PQQ-like domain MQE22_06415 PF01011 PQQ enzyme repeat MQE22_06430 PF01475 Ferric uptake regulator family MQE22_06435 PF01266 FAD dependent oxidoreductase MQE22_06445 PF01103 Surface antigen MQE22_06445 PF07244 Surface antigen variable number repeat MQE22_06445 PF17243 POTRA domain TamA domain 1 MQE22_06480 PF00581 Rhodanese-like domain MQE22_06480 PF00753 Metallo-beta-lactamase superfamily MQE22_06500 PF00664 ABC transporter transmembrane region MQE22_06500 PF00005 ABC transporter MQE22_06510 PF00106 short chain dehydrogenase MQE22_06515 PF03458 UPF0126 domain MQE22_06520 PF01726 LexA DNA binding domain MQE22_06520 PF00717 Peptidase S24-like MQE22_06535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MQE22_06535 PF14579 Helix-hairpin-helix motif MQE22_06535 PF07733 Bacterial DNA polymerase III alpha NTPase domain MQE22_06535 PF01336 OB-fold nucleic acid binding domain MQE22_06535 PF02811 PHP domain MQE22_06540 PF00324 Amino acid permease MQE22_06545 PF00171 Aldehyde dehydrogenase family MQE22_06545 PF01619 Proline dehydrogenase MQE22_06545 PF14850 DNA-binding domain of Proline dehydrogenase MQE22_06545 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MQE22_06550 PF13520 Amino acid permease MQE22_06555 PF00696 Amino acid kinase family MQE22_06555 PF01472 PUA domain MQE22_06560 PF00924 Mechanosensitive ion channel MQE22_06560 PF12795 Mechanosensitive ion channel porin domain MQE22_06560 PF12794 Mechanosensitive ion channel inner membrane domain 1 MQE22_06570 PF06508 Queuosine biosynthesis protein QueC MQE22_06575 PF01300 Telomere recombination MQE22_06580 PF02163 Peptidase family M50 MQE22_06585 PF00579 tRNA synthetases class I (W and Y) MQE22_06590 PF02616 Segregation and condensation protein ScpA MQE22_06595 PF04079 Segregation and condensation complex subunit ScpB MQE22_06600 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_06605 PF01479 S4 domain MQE22_06605 PF00849 RNA pseudouridylate synthase MQE22_06615 PF04356 Protein of unknown function (DUF489) MQE22_06620 PF08335 GlnD PII-uridylyltransferase MQE22_06620 PF01966 HD domain MQE22_06620 PF01909 Nucleotidyltransferase domain MQE22_06625 PF00557 Metallopeptidase family M24 MQE22_06630 PF03749 Sugar fermentation stimulation protein RE domain MQE22_06630 PF17746 SfsA N-terminal OB domain MQE22_06635 PF03466 LysR substrate binding domain MQE22_06635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_06650 PF01258 Prokaryotic dksA/traR C4-type zinc finger MQE22_06655 PF13419 Haloacid dehalogenase-like hydrolase MQE22_06665 PF00578 AhpC/TSA family MQE22_06670 PF13638 PIN domain MQE22_06670 PF02562 PhoH-like protein MQE22_06675 PF17810 Arginine decarboxylase helical bundle domain MQE22_06675 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MQE22_06675 PF17944 Arginine decarboxylase C-terminal helical extension MQE22_06680 PF01557 Fumarylacetoacetate (FAA) hydrolase family MQE22_06685 PF00999 Sodium/hydrogen exchanger family MQE22_06685 PF02254 TrkA-N domain MQE22_06685 PF02080 TrkA-C domain MQE22_06690 PF01370 NAD dependent epimerase/dehydratase family MQE22_06695 PF01370 NAD dependent epimerase/dehydratase family MQE22_06710 PF00034 Cytochrome c MQE22_06730 PF00877 NlpC/P60 family MQE22_06735 PF13406 Transglycosylase SLT domain MQE22_06740 PF01979 Amidohydrolase family MQE22_06750 PF13419 Haloacid dehalogenase-like hydrolase MQE22_06755 PF00892 EamA-like transporter family MQE22_06765 PF14602 Hexapeptide repeat of succinyl-transferase MQE22_06765 PF00132 Bacterial transferase hexapeptide (six repeats) MQE22_06765 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MQE22_06770 PF07687 Peptidase dimerisation domain MQE22_06770 PF01546 Peptidase family M20/M25/M40 MQE22_06785 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MQE22_06785 PF00391 PEP-utilising enzyme, mobile domain MQE22_06785 PF02896 PEP-utilising enzyme, TIM barrel domain MQE22_06790 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MQE22_06790 PF01676 Metalloenzyme superfamily MQE22_06800 PF00676 Dehydrogenase E1 component MQE22_06805 PF02371 Transposase IS116/IS110/IS902 family MQE22_06805 PF01548 Transposase MQE22_06815 PF02780 Transketolase, C-terminal domain MQE22_06815 PF02779 Transketolase, pyrimidine binding domain MQE22_06820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MQE22_06820 PF00364 Biotin-requiring enzyme MQE22_06820 PF02817 e3 binding domain MQE22_06825 PF00871 Acetokinase family MQE22_06845 PF10544 T5orf172 domain MQE22_06865 PF01381 Helix-turn-helix MQE22_06870 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB MQE22_06875 PF01443 Viral (Superfamily 1) RNA helicase MQE22_06875 PF17841 BID domain of Bartonella effector protein (Bep) MQE22_06875 PF03389 MobA/MobL family MQE22_06985 PF05973 Phage derived protein Gp49-like (DUF891) MQE22_07015 PF13356 Arm DNA-binding domain MQE22_07015 PF14659 Phage integrase, N-terminal SAM-like domain MQE22_07015 PF00589 Phage integrase family MQE22_07020 PF00990 Diguanylate cyclase, GGDEF domain MQE22_07025 PF00561 alpha/beta hydrolase fold MQE22_07045 PF05114 Protein of unknown function (DUF692) MQE22_07080 PF00875 DNA photolyase MQE22_07080 PF03441 FAD binding domain of DNA photolyase MQE22_07105 PF00271 Helicase conserved C-terminal domain MQE22_07105 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) MQE22_07105 PF04851 Type III restriction enzyme, res subunit MQE22_07105 PF08463 EcoEI R protein C-terminal MQE22_07115 PF05016 ParE toxin of type II toxin-antitoxin system, parDE MQE22_07120 PF01420 Type I restriction modification DNA specificity domain MQE22_07140 PF02384 N-6 DNA Methylase MQE22_07140 PF12161 HsdM N-terminal domain MQE22_07150 PF01493 GXGXG motif MQE22_07150 PF00310 Glutamine amidotransferases class-II MQE22_07150 PF04898 Glutamate synthase central domain MQE22_07150 PF01645 Conserved region in glutamate synthase MQE22_07155 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_07155 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MQE22_07160 PF01208 Uroporphyrinogen decarboxylase (URO-D) MQE22_07165 PF01553 Acyltransferase MQE22_07175 PF00709 Adenylosuccinate synthetase MQE22_07180 PF13393 Histidyl-tRNA synthetase MQE22_07195 PF16360 GTP-binding GTPase Middle Region MQE22_07195 PF13167 GTP-binding GTPase N-terminal MQE22_07195 PF01926 50S ribosome-binding GTPase MQE22_07200 PF17209 Hfq protein MQE22_07205 PF00311 Phosphoenolpyruvate carboxylase MQE22_07210 PF02545 Maf-like protein MQE22_07215 PF00528 Binding-protein-dependent transport system inner membrane component MQE22_07220 PF00528 Binding-protein-dependent transport system inner membrane component MQE22_07225 PF12849 PBP superfamily domain MQE22_07245 PF00300 Histidine phosphatase superfamily (branch 1) MQE22_07255 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MQE22_07255 PF01926 50S ribosome-binding GTPase MQE22_07260 PF13360 PQQ-like domain MQE22_07270 PF03129 Anticodon binding domain MQE22_07270 PF13393 Histidyl-tRNA synthetase MQE22_07275 PF04551 GcpE protein MQE22_07290 PF04055 Radical SAM superfamily MQE22_07295 PF00334 Nucleoside diphosphate kinase MQE22_07305 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_07310 PF00005 ABC transporter MQE22_07310 PF08402 TOBE domain MQE22_07315 PF00528 Binding-protein-dependent transport system inner membrane component MQE22_07320 PF01171 PP-loop family MQE22_07320 PF09179 TilS substrate binding domain MQE22_07320 PF11734 TilS substrate C-terminal domain MQE22_07325 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MQE22_07330 PF01336 OB-fold nucleic acid binding domain MQE22_07330 PF02811 PHP domain MQE22_07330 PF07733 Bacterial DNA polymerase III alpha NTPase domain MQE22_07330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MQE22_07330 PF14579 Helix-hairpin-helix motif MQE22_07335 PF01351 Ribonuclease HII MQE22_07340 PF02684 Lipid-A-disaccharide synthetase MQE22_07345 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MQE22_07355 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MQE22_07355 PF00132 Bacterial transferase hexapeptide (six repeats) MQE22_07360 PF07977 FabA-like domain MQE22_07365 PF00132 Bacterial transferase hexapeptide (six repeats) MQE22_07365 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MQE22_07375 PF01103 Surface antigen MQE22_07375 PF07244 Surface antigen variable number repeat MQE22_07380 PF17820 PDZ domain MQE22_07380 PF02163 Peptidase family M50 MQE22_07385 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MQE22_07385 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MQE22_07385 PF13288 DXP reductoisomerase C-terminal domain MQE22_07395 PF01255 Putative undecaprenyl diphosphate synthase MQE22_07400 PF01765 Ribosome recycling factor MQE22_07405 PF00696 Amino acid kinase family MQE22_07410 PF00889 Elongation factor TS MQE22_07415 PF00318 Ribosomal protein S2 MQE22_07425 PF02541 Ppx/GppA phosphatase family MQE22_07430 PF01895 PhoU domain MQE22_07435 PF00005 ABC transporter MQE22_07440 PF00989 PAS fold MQE22_07440 PF11808 Phosphate regulon sensor protein PhoR MQE22_07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_07440 PF00512 His Kinase A (phospho-acceptor) domain MQE22_07445 PF00072 Response regulator receiver domain MQE22_07445 PF00486 Transcriptional regulatory protein, C terminal MQE22_07455 PF04384 Iron-sulphur cluster assembly MQE22_07460 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE22_07465 PF00012 Hsp70 protein MQE22_07475 PF01521 Iron-sulphur cluster biosynthesis MQE22_07480 PF01592 NifU-like N terminal domain MQE22_07485 PF00266 Aminotransferase class-V MQE22_07490 PF02082 Transcriptional regulator MQE22_07495 PF00132 Bacterial transferase hexapeptide (six repeats) MQE22_07500 PF00588 SpoU rRNA Methylase family MQE22_07505 PF00459 Inositol monophosphatase family MQE22_07515 PF04279 Intracellular septation protein A MQE22_07520 PF03795 YCII-related domain MQE22_07525 PF01722 BolA-like protein MQE22_07530 PF00583 Acetyltransferase (GNAT) family MQE22_07530 PF00696 Amino acid kinase family MQE22_07540 PF00920 Dehydratase family MQE22_07545 PF01594 AI-2E family transporter MQE22_07550 PF00390 Malic enzyme, N-terminal domain MQE22_07550 PF03949 Malic enzyme, NAD binding domain MQE22_07550 PF01515 Phosphate acetyl/butaryl transferase MQE22_07555 PF01197 Ribosomal protein L31 MQE22_07560 PF07497 Rho termination factor, RNA-binding domain MQE22_07560 PF07498 Rho termination factor, N-terminal domain MQE22_07560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MQE22_07565 PF00085 Thioredoxin MQE22_07570 PF04185 Phosphoesterase family MQE22_07570 PF05506 Domain of unknown function (DUF756) MQE22_07580 PF07694 5TMR of 5TMR-LYT MQE22_07580 PF00990 Diguanylate cyclase, GGDEF domain MQE22_07585 PF00990 Diguanylate cyclase, GGDEF domain MQE22_07585 PF00563 EAL domain MQE22_07585 PF03707 Bacterial signalling protein N terminal repeat MQE22_07595 PF07963 Prokaryotic N-terminal methylation motif MQE22_07595 PF00114 Pilin (bacterial filament) MQE22_07610 PF04940 Sensors of blue-light using FAD MQE22_07610 PF00563 EAL domain MQE22_07640 PF07549 SecD/SecF GG Motif MQE22_07640 PF02355 Protein export membrane protein MQE22_07645 PF02355 Protein export membrane protein MQE22_07645 PF13721 SecD export protein N-terminal TM region MQE22_07645 PF07549 SecD/SecF GG Motif MQE22_07650 PF02699 Preprotein translocase subunit MQE22_07660 PF01702 Queuine tRNA-ribosyltransferase MQE22_07665 PF02547 Queuosine biosynthesis protein MQE22_07670 PF00571 CBS domain MQE22_07670 PF01595 Cyclin M transmembrane N-terminal domain MQE22_07670 PF03471 Transporter associated domain MQE22_07680 PF01053 Cys/Met metabolism PLP-dependent enzyme MQE22_07685 PF00156 Phosphoribosyl transferase domain MQE22_07695 PF02875 Mur ligase family, glutamate ligase domain MQE22_07695 PF08245 Mur ligase middle domain MQE22_07700 PF17848 Acetyl-coA carboxylase zinc finger domain MQE22_07700 PF01039 Carboxyl transferase domain MQE22_07705 PF00290 Tryptophan synthase alpha chain MQE22_07710 PF00291 Pyridoxal-phosphate dependent enzyme MQE22_07715 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MQE22_07720 PF01416 tRNA pseudouridine synthase MQE22_07730 PF02774 Semialdehyde dehydrogenase, dimerisation domain MQE22_07730 PF01118 Semialdehyde dehydrogenase, NAD binding domain MQE22_07735 PF00180 Isocitrate/isopropylmalate dehydrogenase MQE22_07745 PF12804 MobA-like NTP transferase domain MQE22_07750 PF03205 Molybdopterin guanine dinucleotide synthesis protein B MQE22_07755 PF00994 Probable molybdopterin binding domain MQE22_07755 PF03454 MoeA C-terminal region (domain IV) MQE22_07755 PF03453 MoeA N-terminal region (domain I and II) MQE22_07760 PF13091 PLD-like domain MQE22_07765 PF00875 DNA photolyase MQE22_07765 PF03441 FAD binding domain of DNA photolyase MQE22_07775 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MQE22_07775 PF03120 NAD-dependent DNA ligase OB-fold domain MQE22_07775 PF12826 Helix-hairpin-helix motif MQE22_07775 PF00533 BRCA1 C Terminus (BRCT) domain MQE22_07775 PF01653 NAD-dependent DNA ligase adenylation domain MQE22_07780 PF01027 Inhibitor of apoptosis-promoting Bax1 MQE22_07785 PF01624 MutS domain I MQE22_07785 PF05188 MutS domain II MQE22_07785 PF05192 MutS domain III MQE22_07785 PF05190 MutS family domain IV MQE22_07785 PF00488 MutS domain V MQE22_07810 PF13784 Fic/DOC family N-terminal MQE22_07810 PF02661 Fic/DOC family MQE22_07825 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH MQE22_07840 PF01479 S4 domain MQE22_07840 PF00849 RNA pseudouridylate synthase MQE22_07845 PF10150 Ribonuclease E/G family MQE22_07845 PF12111 Polyribonucleotide phosphorylase C terminal MQE22_07845 PF00575 S1 RNA binding domain MQE22_07850 PF01451 Low molecular weight phosphotyrosine protein phosphatase MQE22_07855 PF09190 DALR domain MQE22_07855 PF01406 tRNA synthetases class I (C) catalytic domain MQE22_07860 PF00749 tRNA synthetases class I (E and Q), catalytic domain MQE22_07865 PF17092 Penicillin-binding protein OB-like domain MQE22_07865 PF00912 Transglycosylase MQE22_07865 PF00905 Penicillin binding protein transpeptidase domain MQE22_07870 PF02769 AIR synthase related protein, C-terminal domain MQE22_07870 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MQE22_07870 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal MQE22_07875 PF01259 SAICAR synthetase MQE22_07880 PF10397 Adenylosuccinate lyase C-terminus MQE22_07880 PF00206 Lyase MQE22_07890 PF00701 Dihydrodipicolinate synthetase family MQE22_07900 PF02321 Outer membrane efflux protein MQE22_07905 PF13533 Biotin-lipoyl like MQE22_07910 PF00873 AcrB/AcrD/AcrF family MQE22_07920 PF01757 Acyltransferase family MQE22_07925 PF01757 Acyltransferase family MQE22_07935 PF07732 Multicopper oxidase MQE22_07935 PF07731 Multicopper oxidase MQE22_07935 PF10518 TAT (twin-arginine translocation) pathway signal sequence MQE22_07935 PF00394 Multicopper oxidase MQE22_07960 PF08241 Methyltransferase domain MQE22_07970 PF07943 Penicillin-binding protein 5, C-terminal domain MQE22_07970 PF00768 D-alanyl-D-alanine carboxypeptidase MQE22_07975 PF07690 Major Facilitator Superfamily MQE22_07980 PF00916 Sulfate permease family MQE22_07980 PF01740 STAS domain MQE22_07990 PF16363 GDP-mannose 4,6 dehydratase MQE22_08020 PF02397 Bacterial sugar transferase MQE22_08040 PF08241 Methyltransferase domain MQE22_08050 PF16363 GDP-mannose 4,6 dehydratase MQE22_08055 PF16363 GDP-mannose 4,6 dehydratase MQE22_08065 PF00535 Glycosyl transferase family 2 MQE22_08070 PF00535 Glycosyl transferase family 2 MQE22_08075 PF00535 Glycosyl transferase family 2 MQE22_08080 PF01943 Polysaccharide biosynthesis protein MQE22_08085 PF05685 Putative restriction endonuclease MQE22_08095 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ MQE22_08100 PF04221 RelB antitoxin MQE22_08130 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MQE22_08145 PF00085 Thioredoxin MQE22_08150 PF13742 OB-fold nucleic acid binding domain MQE22_08150 PF02601 Exonuclease VII, large subunit MQE22_08165 PF13677 Membrane MotB of proton-channel complex MotA/MotB MQE22_08165 PF00691 OmpA family MQE22_08170 PF01618 MotA/TolQ/ExbB proton channel family MQE22_08185 PF00990 Diguanylate cyclase, GGDEF domain MQE22_08190 PF00990 Diguanylate cyclase, GGDEF domain MQE22_08195 PF03976 Polyphosphate kinase 2 (PPK2) MQE22_08200 PF17876 Cold shock domain MQE22_08200 PF08461 Ribonuclease R winged-helix domain MQE22_08200 PF08206 Ribonuclease B OB domain MQE22_08200 PF00773 RNB domain MQE22_08200 PF00575 S1 RNA binding domain MQE22_08215 PF03729 Short repeat of unknown function (DUF308) MQE22_08220 PF01312 FlhB HrpN YscU SpaS Family MQE22_08235 PF13145 PPIC-type PPIASE domain MQE22_08250 PF00216 Bacterial DNA-binding protein MQE22_08255 PF02190 ATP-dependent protease La (LON) substrate-binding domain MQE22_08255 PF05362 Lon protease (S16) C-terminal proteolytic domain MQE22_08255 PF00004 ATPase family associated with various cellular activities (AAA) MQE22_08260 PF07724 AAA domain (Cdc48 subfamily) MQE22_08260 PF10431 C-terminal, D2-small domain, of ClpB protein MQE22_08260 PF06689 ClpX C4-type zinc finger MQE22_08265 PF00574 Clp protease MQE22_08270 PF05698 Bacterial trigger factor protein (TF) C-terminus MQE22_08270 PF05697 Bacterial trigger factor protein (TF) MQE22_08270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MQE22_08275 PF00156 Phosphoribosyl transferase domain MQE22_08280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MQE22_08285 PF18073 Rubredoxin metal binding domain MQE22_08290 PF00216 Bacterial DNA-binding protein MQE22_08295 PF00575 S1 RNA binding domain MQE22_08300 PF02224 Cytidylate kinase MQE22_08305 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MQE22_08310 PF02153 Prephenate dehydrogenase MQE22_08315 PF00793 DAHP synthetase I family MQE22_08315 PF18152 DAHP synthase ferredoxin-like domain MQE22_08320 PF00155 Aminotransferase class I and II MQE22_08325 PF01842 ACT domain MQE22_08325 PF01817 Chorismate mutase type II MQE22_08325 PF00800 Prephenate dehydratase MQE22_08330 PF00266 Aminotransferase class-V MQE22_08335 PF03989 DNA gyrase C-terminal domain, beta-propeller MQE22_08335 PF00521 DNA gyrase/topoisomerase IV, subunit A MQE22_08340 PF01008 Initiation factor 2 subunit family MQE22_08345 PF10672 S-adenosylmethionine-dependent methyltransferase MQE22_08345 PF17785 PUA-like domain MQE22_08355 PF02195 ParB-like nuclease domain MQE22_08355 PF17762 HTH domain found in ParB protein MQE22_08360 PF13614 AAA domain MQE22_08375 PF03743 Bacterial conjugation TrbI-like protein MQE22_08420 PF03135 CagE, TrbE, VirB family, component of type IV transporter system MQE22_08440 PF00437 Type II/IV secretion system protein MQE22_08450 PF11799 impB/mucB/samB family C-terminal domain MQE22_08450 PF00817 impB/mucB/samB family MQE22_08460 PF02583 Metal-sensitive transcriptional repressor MQE22_08470 PF00873 AcrB/AcrD/AcrF family MQE22_08510 PF02308 MgtC family MQE22_08525 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase MQE22_08530 PF04264 YceI-like domain MQE22_08535 PF03358 NADPH-dependent FMN reductase MQE22_08540 PF01638 HxlR-like helix-turn-helix MQE22_08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_08550 PF00403 Heavy-metal-associated domain MQE22_08550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE22_08555 PF03203 MerC mercury resistance protein MQE22_08560 PF00376 MerR family regulatory protein MQE22_08560 PF09278 MerR, DNA binding MQE22_08590 PF01131 DNA topoisomerase MQE22_08590 PF01751 Toprim domain MQE22_08595 PF02371 Transposase IS116/IS110/IS902 family MQE22_08595 PF01548 Transposase MQE22_08600 PF01751 Toprim domain MQE22_08600 PF01131 DNA topoisomerase MQE22_08640 PF02371 Transposase IS116/IS110/IS902 family MQE22_08640 PF01548 Transposase MQE22_08670 PF01612 3'-5' exonuclease MQE22_08670 PF00476 DNA polymerase family A MQE22_08680 PF00436 Single-strand binding protein family MQE22_08695 PF02371 Transposase IS116/IS110/IS902 family MQE22_08695 PF01548 Transposase MQE22_08775 PF08401 Domain of unknown function (DUF1738) MQE22_08775 PF18818 Metallopeptidase superfamily domain MQE22_08775 PF13362 Toprim domain MQE22_08815 PF01464 Transglycosylase SLT domain MQE22_08820 PF02534 Type IV secretory system Conjugative DNA transfer MQE22_08850 PF00176 SNF2 family N-terminal domain MQE22_08850 PF00271 Helicase conserved C-terminal domain MQE22_08855 PF00589 Phage integrase family MQE22_08905 PF01434 Peptidase family M41 MQE22_08905 PF06480 FtsH Extracellular MQE22_08905 PF00004 ATPase family associated with various cellular activities (AAA) MQE22_08905 PF17862 AAA+ lid domain MQE22_08955 PF01551 Peptidase family M23 MQE22_08955 PF01464 Transglycosylase SLT domain MQE22_08955 PF10145 Phage-related minor tail protein MQE22_08980 PF09335 SNARE associated Golgi protein MQE22_09020 PF02222 ATP-grasp domain MQE22_09025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MQE22_09025 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MQE22_09030 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain MQE22_09030 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain MQE22_09040 PF00512 His Kinase A (phospho-acceptor) domain MQE22_09040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_09040 PF00672 HAMP domain MQE22_09050 PF01654 Cytochrome bd terminal oxidase subunit I MQE22_09055 PF02322 Cytochrome bd terminal oxidase subunit II MQE22_09065 PF00999 Sodium/hydrogen exchanger family MQE22_09080 PF02678 Pirin MQE22_09080 PF05726 Pirin C-terminal cupin domain MQE22_09085 PF03358 NADPH-dependent FMN reductase MQE22_09095 PF05724 Thiopurine S-methyltransferase (TPMT) MQE22_09100 PF03707 Bacterial signalling protein N terminal repeat MQE22_09100 PF00990 Diguanylate cyclase, GGDEF domain MQE22_09100 PF00563 EAL domain MQE22_09105 PF00072 Response regulator receiver domain MQE22_09105 PF00486 Transcriptional regulatory protein, C terminal MQE22_09110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_09110 PF00512 His Kinase A (phospho-acceptor) domain MQE22_09110 PF09308 LuxQ, periplasmic MQE22_09110 PF00072 Response regulator receiver domain MQE22_09120 PF00990 Diguanylate cyclase, GGDEF domain MQE22_09120 PF07694 5TMR of 5TMR-LYT MQE22_09125 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MQE22_09130 PF01850 PIN domain MQE22_09140 PF00873 AcrB/AcrD/AcrF family MQE22_09165 PF00072 Response regulator receiver domain MQE22_09165 PF00486 Transcriptional regulatory protein, C terminal MQE22_09170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_09170 PF00512 His Kinase A (phospho-acceptor) domain MQE22_09170 PF08521 Two-component sensor kinase N-terminal MQE22_09185 PF00873 AcrB/AcrD/AcrF family MQE22_09200 PF00535 Glycosyl transferase family 2 MQE22_09205 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase MQE22_09215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MQE22_09245 PF00291 Pyridoxal-phosphate dependent enzyme MQE22_09245 PF00585 C-terminal regulatory domain of Threonine dehydratase MQE22_09260 PF03150 Di-haem cytochrome c peroxidase MQE22_09260 PF00034 Cytochrome c MQE22_09320 PF09115 DNA polymerase III, delta subunit, C terminal MQE22_09325 PF02223 Thymidylate kinase MQE22_09330 PF02618 YceG-like family MQE22_09340 PF00109 Beta-ketoacyl synthase, N-terminal domain MQE22_09340 PF02801 Beta-ketoacyl synthase, C-terminal domain MQE22_09345 PF00550 Phosphopantetheine attachment site MQE22_09355 PF00698 Acyl transferase domain MQE22_09360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MQE22_09360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MQE22_09365 PF02504 Fatty acid synthesis protein MQE22_09370 PF01783 Ribosomal L32p protein family MQE22_09380 PF00117 Glutamine amidotransferase class-I MQE22_09380 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MQE22_09385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MQE22_09385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MQE22_09385 PF02142 MGS-like domain MQE22_09390 PF01272 Transcription elongation factor, GreA/GreB, C-term MQE22_09390 PF03449 Transcription elongation factor, N-terminal MQE22_09395 PF02673 Bacitracin resistance protein BacA MQE22_09400 PF07690 Major Facilitator Superfamily MQE22_09405 PF01040 UbiA prenyltransferase family MQE22_09420 PF00510 Cytochrome c oxidase subunit III MQE22_09425 PF00115 Cytochrome C and Quinol oxidase polypeptide I MQE22_09430 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MQE22_09430 PF06481 COX Aromatic Rich Motif MQE22_09440 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MQE22_09445 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MQE22_09445 PF01243 Pyridoxamine 5'-phosphate oxidase MQE22_09455 PF00694 Aconitase C-terminal domain MQE22_09465 PF00330 Aconitase family (aconitate hydratase) MQE22_09470 PF01523 Putative modulator of DNA gyrase MQE22_09480 PF00543 Nitrogen regulatory protein P-II MQE22_09485 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MQE22_09485 PF00117 Glutamine amidotransferase class-I MQE22_09490 PF00909 Ammonium Transporter Family MQE22_09495 PF00543 Nitrogen regulatory protein P-II MQE22_09505 PF03951 Glutamine synthetase, beta-Grasp domain MQE22_09505 PF00120 Glutamine synthetase, catalytic domain MQE22_09510 PF02954 Bacterial regulatory protein, Fis family MQE22_09510 PF00072 Response regulator receiver domain MQE22_09510 PF00158 Sigma-54 interaction domain MQE22_09515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_09515 PF00512 His Kinase A (phospho-acceptor) domain MQE22_09515 PF00989 PAS fold MQE22_09550 PF14403 Circularly permuted ATP-grasp type 2 MQE22_09565 PF00909 Ammonium Transporter Family MQE22_09570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_09570 PF00183 Hsp90 protein MQE22_09575 PF00990 Diguanylate cyclase, GGDEF domain MQE22_09575 PF03707 Bacterial signalling protein N terminal repeat MQE22_09575 PF00563 EAL domain MQE22_09580 PF01339 CheB methylesterase MQE22_09580 PF00072 Response regulator receiver domain MQE22_09585 PF03975 CheD chemotactic sensory transduction MQE22_09590 PF01739 CheR methyltransferase, SAM binding domain MQE22_09590 PF03705 CheR methyltransferase, all-alpha domain MQE22_09595 PF01584 CheW-like domain MQE22_09600 PF00672 HAMP domain MQE22_09600 PF16591 Helical bimodular sensor domain MQE22_09600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MQE22_09605 PF01584 CheW-like domain MQE22_09605 PF09078 CheY binding MQE22_09605 PF02895 Signal transducing histidine kinase, homodimeric domain MQE22_09605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_09605 PF01627 Hpt domain MQE22_09615 PF00072 Response regulator receiver domain MQE22_09625 PF01654 Cytochrome bd terminal oxidase subunit I MQE22_09645 PF03050 Transposase IS66 family MQE22_09645 PF13007 Transposase C of IS166 homeodomain MQE22_09645 PF13005 zinc-finger binding domain of transposase IS66 MQE22_09645 PF13817 IS66 C-terminal element MQE22_09680 PF01266 FAD dependent oxidoreductase MQE22_09685 PF01427 D-ala-D-ala dipeptidase MQE22_09700 PF02371 Transposase IS116/IS110/IS902 family MQE22_09700 PF01548 Transposase MQE22_09730 PF01728 FtsJ-like methyltransferase MQE22_09735 PF01985 CRS1 / YhbY (CRM) domain MQE22_09740 PF08264 Anticodon-binding domain of tRNA MQE22_09740 PF00133 tRNA synthetases class I (I, L, M and V) MQE22_09740 PF13603 Leucyl-tRNA synthetase, Domain 2 MQE22_09750 PF14840 Processivity clamp loader gamma complex DNA pol III C-term MQE22_09750 PF06144 DNA polymerase III, delta subunit MQE22_09755 PF00171 Aldehyde dehydrogenase family MQE22_09760 PF02237 Biotin protein ligase C terminal domain MQE22_09760 PF03099 Biotin/lipoate A/B protein ligase family MQE22_09760 PF08279 HTH domain MQE22_09765 PF03309 Type III pantothenate kinase MQE22_09775 PF05195 Aminopeptidase P, N-terminal domain MQE22_09775 PF00557 Metallopeptidase family M24 MQE22_09790 PF09334 tRNA synthetases class I (M) MQE22_09790 PF01588 Putative tRNA binding domain MQE22_09805 PF10417 C-terminal domain of 1-Cys peroxiredoxin MQE22_09805 PF00578 AhpC/TSA family MQE22_09810 PF00793 DAHP synthetase I family MQE22_09810 PF01817 Chorismate mutase type II MQE22_09815 PF10415 Fumarase C C-terminus MQE22_09815 PF00206 Lyase MQE22_09820 PF01432 Peptidase family M3 MQE22_09820 PF08439 Oligopeptidase F MQE22_09845 PF04362 Bacterial Fe(2+) trafficking MQE22_09850 PF10576 Iron-sulfur binding domain of endonuclease III MQE22_09850 PF00633 Helix-hairpin-helix motif MQE22_09850 PF00730 HhH-GPD superfamily base excision DNA repair protein MQE22_09850 PF14815 NUDIX domain MQE22_09860 PF05524 PEP-utilising enzyme, N-terminal MQE22_09860 PF00391 PEP-utilising enzyme, mobile domain MQE22_09860 PF02896 PEP-utilising enzyme, TIM barrel domain MQE22_09865 PF00381 PTS HPr component phosphorylation site MQE22_09875 PF01513 ATP-NAD kinase MQE22_09880 PF02463 RecF/RecN/SMC N terminal domain MQE22_09890 PF00512 His Kinase A (phospho-acceptor) domain MQE22_09890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_09900 PF00072 Response regulator receiver domain MQE22_09900 PF00158 Sigma-54 interaction domain MQE22_09910 PF00483 Nucleotidyl transferase MQE22_09930 PF00534 Glycosyl transferases group 1 MQE22_09930 PF08323 Starch synthase catalytic domain MQE22_09935 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MQE22_09935 PF10996 Beta-Casp domain MQE22_09935 PF00753 Metallo-beta-lactamase superfamily MQE22_09945 PF10576 Iron-sulfur binding domain of endonuclease III MQE22_09945 PF00633 Helix-hairpin-helix motif MQE22_09945 PF00730 HhH-GPD superfamily base excision DNA repair protein MQE22_09955 PF03734 L,D-transpeptidase catalytic domain MQE22_09955 PF01476 LysM domain MQE22_09955 PF17969 L,D-transpeptidase C-terminal domain MQE22_09975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MQE22_09980 PF00149 Calcineurin-like phosphoesterase MQE22_09995 PF12704 MacB-like periplasmic core domain MQE22_09995 PF02687 FtsX-like permease family MQE22_09995 PF00005 ABC transporter MQE22_10005 PF13533 Biotin-lipoyl like MQE22_10010 PF00440 Bacterial regulatory proteins, tetR family MQE22_10015 PF13545 Crp-like helix-turn-helix domain MQE22_10015 PF00027 Cyclic nucleotide-binding domain MQE22_10020 PF00970 Oxidoreductase FAD-binding domain MQE22_10020 PF00175 Oxidoreductase NAD-binding domain MQE22_10020 PF00042 Globin MQE22_10025 PF00970 Oxidoreductase FAD-binding domain MQE22_10025 PF00175 Oxidoreductase NAD-binding domain MQE22_10025 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE22_10040 PF04343 Protein of unknown function, DUF488 MQE22_10045 PF00529 HlyD membrane-fusion protein of T1SS MQE22_10045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE22_10050 PF02321 Outer membrane efflux protein MQE22_10055 PF07690 Major Facilitator Superfamily MQE22_10060 PF03861 ANTAR domain MQE22_10060 PF08376 Nitrate and nitrite sensing MQE22_10070 PF10414 Sirohaem synthase dimerisation region MQE22_10070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MQE22_10075 PF02885 Glycosyl transferase family, helical bundle domain MQE22_10075 PF00591 Glycosyl transferase family, a/b domain MQE22_10080 PF01568 Molydopterin dinucleotide binding domain MQE22_10080 PF00384 Molybdopterin oxidoreductase MQE22_10080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MQE22_10085 PF00355 Rieske [2Fe-2S] domain MQE22_10090 PF18267 Rubredoxin NAD+ reductase C-terminal domain MQE22_10090 PF04324 BFD-like [2Fe-2S] binding domain MQE22_10090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MQE22_10090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MQE22_10090 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_10100 PF07690 Major Facilitator Superfamily MQE22_10105 PF00005 ABC transporter MQE22_10110 PF03167 Uracil DNA glycosylase superfamily MQE22_10115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_10115 PF03466 LysR substrate binding domain MQE22_10120 PF00696 Amino acid kinase family MQE22_10120 PF13840 ACT domain MQE22_10120 PF01842 ACT domain MQE22_10125 PF00202 Aminotransferase class-III MQE22_10130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MQE22_10130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MQE22_10135 PF00764 Arginosuccinate synthase MQE22_10140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MQE22_10145 PF00929 Exonuclease MQE22_10150 PF00075 RNase H MQE22_10155 PF01209 ubiE/COQ5 methyltransferase family MQE22_10160 PF16123 Hydroxyacylglutathione hydrolase C-terminus MQE22_10160 PF00753 Metallo-beta-lactamase superfamily MQE22_10165 PF00675 Insulinase (Peptidase family M16) MQE22_10165 PF05193 Peptidase M16 inactive domain MQE22_10170 PF00013 KH domain MQE22_10170 PF01138 3' exoribonuclease family, domain 1 MQE22_10170 PF00575 S1 RNA binding domain MQE22_10170 PF03725 3' exoribonuclease family, domain 2 MQE22_10170 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MQE22_10175 PF00312 Ribosomal protein S15 MQE22_10180 PF09157 Pseudouridine synthase II TruB, C-terminal MQE22_10180 PF16198 tRNA pseudouridylate synthase B C-terminal domain MQE22_10180 PF01509 TruB family pseudouridylate synthase (N terminal domain) MQE22_10185 PF02033 Ribosome-binding factor A MQE22_10190 PF00009 Elongation factor Tu GTP binding domain MQE22_10190 PF11987 Translation-initiation factor 2 MQE22_10190 PF08364 Bacterial translation initiation factor IF-2 associated region MQE22_10190 PF04760 Translation initiation factor IF-2, N-terminal region MQE22_10195 PF08529 NusA N-terminal domain MQE22_10195 PF13184 NusA-like KH domain MQE22_10200 PF02576 RimP N-terminal domain MQE22_10200 PF17384 RimP C-terminal SH3 domain MQE22_10235 PF17969 L,D-transpeptidase C-terminal domain MQE22_10235 PF01476 LysM domain MQE22_10235 PF03734 L,D-transpeptidase catalytic domain MQE22_10245 PF02403 Seryl-tRNA synthetase N-terminal domain MQE22_10245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MQE22_10250 PF00004 ATPase family associated with various cellular activities (AAA) MQE22_10250 PF12002 MgsA AAA+ ATPase C terminal MQE22_10250 PF16193 AAA C-terminal domain MQE22_10260 PF03548 Outer membrane lipoprotein carrier protein LolA MQE22_10265 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MQE22_10265 PF17854 FtsK alpha domain MQE22_10265 PF09397 Ftsk gamma domain MQE22_10265 PF01580 FtsK/SpoIIIE family MQE22_10270 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_10280 PF13411 MerR HTH family regulatory protein MQE22_10285 PF01142 tRNA pseudouridine synthase D (TruD) MQE22_10290 PF02542 YgbB family MQE22_10295 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MQE22_10300 PF02559 CarD-like/TRCF domain MQE22_10300 PF00270 DEAD/DEAH box helicase MQE22_10300 PF00271 Helicase conserved C-terminal domain MQE22_10300 PF03461 TRCF domain MQE22_10300 PF17757 UvrB interaction domain MQE22_10310 PF00462 Glutaredoxin MQE22_10310 PF08534 Redoxin MQE22_10315 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_10315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE22_10320 PF01048 Phosphorylase superfamily MQE22_10325 PF00156 Phosphoribosyl transferase domain MQE22_10345 PF01219 Prokaryotic diacylglycerol kinase MQE22_10350 PF04002 RadC-like JAB domain MQE22_10355 PF02441 Flavoprotein MQE22_10355 PF04127 DNA / pantothenate metabolism flavoprotein MQE22_10360 PF00692 dUTPase MQE22_10370 PF00692 dUTPase MQE22_10375 PF10609 NUBPL iron-transfer P-loop NTPase MQE22_10385 PF05173 Dihydrodipicolinate reductase, C-terminus MQE22_10385 PF01113 Dihydrodipicolinate reductase, N-terminus MQE22_10390 PF00226 DnaJ domain MQE22_10390 PF01556 DnaJ C terminal domain MQE22_10390 PF00684 DnaJ central domain MQE22_10395 PF00012 Hsp70 protein MQE22_10400 PF01025 GrpE MQE22_10405 PF01628 HrcA protein C terminal domain MQE22_10410 PF00471 Ribosomal protein L33 MQE22_10415 PF00830 Ribosomal L28 family MQE22_10420 PF13520 Amino acid permease MQE22_10450 PF00667 FAD binding domain MQE22_10450 PF00175 Oxidoreductase NAD-binding domain MQE22_10450 PF00258 Flavodoxin MQE22_10455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_10455 PF03466 LysR substrate binding domain MQE22_10460 PF00355 Rieske [2Fe-2S] domain MQE22_10465 PF00301 Rubredoxin MQE22_10475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MQE22_10485 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin MQE22_10490 PF01979 Amidohydrolase family MQE22_10495 PF01180 Dihydroorotate dehydrogenase MQE22_10500 PF13247 4Fe-4S dicluster domain MQE22_10500 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MQE22_10500 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_10505 PF00795 Carbon-nitrogen hydrolase MQE22_10510 PF00202 Aminotransferase class-III MQE22_10520 PF03466 LysR substrate binding domain MQE22_10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_10535 PF01425 Amidase MQE22_10545 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) MQE22_10560 PF00962 Adenosine/AMP deaminase MQE22_10580 PF02472 Biopolymer transport protein ExbD/TolR MQE22_10585 PF01618 MotA/TolQ/ExbB proton channel family MQE22_10610 PF04244 Deoxyribodipyrimidine photo-lyase-related protein MQE22_10650 PF03073 TspO/MBR family MQE22_10655 PF00881 Nitroreductase family MQE22_10675 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MQE22_10700 PF00989 PAS fold MQE22_10710 PF01593 Flavin containing amine oxidoreductase MQE22_10720 PF00106 short chain dehydrogenase MQE22_10735 PF16363 GDP-mannose 4,6 dehydratase MQE22_10740 PF04321 RmlD substrate binding domain MQE22_10745 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MQE22_10750 PF00483 Nucleotidyl transferase MQE22_10765 PF00528 Binding-protein-dependent transport system inner membrane component MQE22_10775 PF00005 ABC transporter MQE22_10775 PF08402 TOBE domain MQE22_10795 PF00691 OmpA family MQE22_10810 PF13411 MerR HTH family regulatory protein MQE22_10815 PF00216 Bacterial DNA-binding protein MQE22_10820 PF03147 Ferredoxin-fold anticodon binding domain MQE22_10820 PF01588 Putative tRNA binding domain MQE22_10820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MQE22_10820 PF03483 B3/4 domain MQE22_10820 PF03484 tRNA synthetase B5 domain MQE22_10825 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MQE22_10825 PF01409 tRNA synthetases class II core domain (F) MQE22_10830 PF00453 Ribosomal protein L20 MQE22_10835 PF01632 Ribosomal protein L35 MQE22_10840 PF00707 Translation initiation factor IF-3, C-terminal domain MQE22_10840 PF05198 Translation initiation factor IF-3, N-terminal domain MQE22_10845 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MQE22_10845 PF03129 Anticodon binding domain MQE22_10845 PF02824 TGS domain MQE22_10845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MQE22_10860 PF00361 Proton-conducting membrane transporter MQE22_10865 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus MQE22_10865 PF00361 Proton-conducting membrane transporter MQE22_10870 PF00361 Proton-conducting membrane transporter MQE22_10870 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MQE22_10875 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MQE22_10880 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MQE22_10885 PF12838 4Fe-4S dicluster domain MQE22_10890 PF00146 NADH dehydrogenase MQE22_10895 PF00384 Molybdopterin oxidoreductase MQE22_10895 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MQE22_10895 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal MQE22_10900 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MQE22_10900 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MQE22_10900 PF10531 SLBB domain MQE22_10910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MQE22_10915 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MQE22_10920 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MQE22_10925 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MQE22_10935 PF03840 Preprotein translocase SecG subunit MQE22_10940 PF00121 Triosephosphate isomerase MQE22_10945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MQE22_10945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MQE22_10945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MQE22_10945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MQE22_10950 PF00809 Pterin binding enzyme MQE22_10955 PF00004 ATPase family associated with various cellular activities (AAA) MQE22_10955 PF17862 AAA+ lid domain MQE22_10955 PF06480 FtsH Extracellular MQE22_10955 PF01434 Peptidase family M41 MQE22_10960 PF01523 Putative modulator of DNA gyrase MQE22_10965 PF02867 Ribonucleotide reductase, barrel domain MQE22_10965 PF03477 ATP cone domain MQE22_10965 PF00317 Ribonucleotide reductase, all-alpha domain MQE22_10970 PF00268 Ribonucleotide reductase, small chain MQE22_10980 PF00561 alpha/beta hydrolase fold MQE22_10985 PF00561 alpha/beta hydrolase fold MQE22_10985 PF07021 Methionine biosynthesis protein MetW MQE22_10995 PF01209 ubiE/COQ5 methyltransferase family MQE22_11000 PF08267 Cobalamin-independent synthase, N-terminal domain MQE22_11000 PF01717 Cobalamin-independent synthase, Catalytic domain MQE22_11005 PF01740 STAS domain MQE22_11005 PF00916 Sulfate permease family MQE22_11035 PF03330 Lytic transglycolase MQE22_11035 PF05036 Sporulation related domain MQE22_11040 PF07885 Ion channel MQE22_11040 PF02254 TrkA-N domain MQE22_11045 PF00905 Penicillin binding protein transpeptidase domain MQE22_11045 PF03717 Penicillin-binding Protein dimerisation domain MQE22_11050 PF13180 PDZ domain MQE22_11055 PF07943 Penicillin-binding protein 5, C-terminal domain MQE22_11055 PF00768 D-alanyl-D-alanine carboxypeptidase MQE22_11065 PF00829 Ribosomal prokaryotic L21 protein MQE22_11070 PF01016 Ribosomal L27 protein MQE22_11075 PF01018 GTP1/OBG MQE22_11075 PF01926 50S ribosome-binding GTPase MQE22_11080 PF01472 PUA domain MQE22_11080 PF00696 Amino acid kinase family MQE22_11085 PF01545 Cation efflux family MQE22_11085 PF16916 Dimerisation domain of Zinc Transporter MQE22_11090 PF01435 Peptidase family M48 MQE22_11095 PF01475 Ferric uptake regulator family MQE22_11100 PF04355 SmpA / OmlA family MQE22_11105 PF03364 Polyketide cyclase / dehydrase and lipid transport MQE22_11110 PF13091 PLD-like domain MQE22_11110 PF13396 Phospholipase_D-nuclease N-terminal MQE22_11115 PF01668 SmpB protein MQE22_11125 PF13098 Thioredoxin-like domain MQE22_11130 PF02600 Disulfide bond formation protein DsbB MQE22_11135 PF03881 Fructosamine kinase MQE22_11140 PF02222 ATP-grasp domain MQE22_11140 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MQE22_11145 PF00731 AIR carboxylase MQE22_11150 PF02390 Putative methyltransferase MQE22_11155 PF00027 Cyclic nucleotide-binding domain MQE22_11155 PF13545 Crp-like helix-turn-helix domain MQE22_11170 PF00535 Glycosyl transferase family 2 MQE22_11175 PF00437 Type II/IV secretion system protein MQE22_11180 PF00437 Type II/IV secretion system protein MQE22_11185 PF01168 Alanine racemase, N-terminal domain MQE22_11190 PF03807 NADP oxidoreductase coenzyme F420-dependent MQE22_11190 PF14748 Pyrroline-5-carboxylate reductase dimerisation MQE22_11195 PF02325 YGGT family MQE22_11200 PF06968 Biotin and Thiamin Synthesis associated domain MQE22_11200 PF04055 Radical SAM superfamily MQE22_11210 PF00529 HlyD membrane-fusion protein of T1SS MQE22_11210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE22_11220 PF00696 Amino acid kinase family MQE22_11225 PF16859 Tetracyclin repressor-like, C-terminal domain MQE22_11225 PF00440 Bacterial regulatory proteins, tetR family MQE22_11245 PF00970 Oxidoreductase FAD-binding domain MQE22_11245 PF00111 2Fe-2S iron-sulfur cluster binding domain MQE22_11245 PF00175 Oxidoreductase NAD-binding domain MQE22_11250 PF00929 Exonuclease MQE22_11255 PF03649 Uncharacterised protein family (UPF0014) MQE22_11275 PF13614 AAA domain MQE22_11295 PF05717 IS66 Orf2 like protein MQE22_11320 PF01435 Peptidase family M48 MQE22_11330 PF08241 Methyltransferase domain MQE22_11335 PF00561 alpha/beta hydrolase fold MQE22_11340 PF00155 Aminotransferase class I and II MQE22_11345 PF00156 Phosphoribosyl transferase domain MQE22_11350 PF00588 SpoU rRNA Methylase family MQE22_11355 PF07690 Major Facilitator Superfamily MQE22_11360 PF03781 Sulfatase-modifying factor enzyme 1 MQE22_11360 PF12867 DinB superfamily MQE22_11365 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MQE22_11375 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MQE22_11380 PF00535 Glycosyl transferase family 2 MQE22_11400 PF13439 Glycosyltransferase Family 4 MQE22_11400 PF00534 Glycosyl transferases group 1 MQE22_11410 PF00535 Glycosyl transferase family 2 MQE22_11415 PF00293 NUDIX domain MQE22_11420 PF01960 ArgJ family MQE22_11425 PF07517 SecA DEAD-like domain MQE22_11425 PF01043 SecA preprotein cross-linking domain MQE22_11425 PF07516 SecA Wing and Scaffold domain MQE22_11425 PF02810 SEC-C motif MQE22_11435 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MQE22_11440 PF00043 Glutathione S-transferase, C-terminal domain MQE22_11440 PF02798 Glutathione S-transferase, N-terminal domain MQE22_11445 PF00501 AMP-binding enzyme MQE22_11460 PF02381 MraZ protein, putative antitoxin-like MQE22_11465 PF01795 MraW methylase family MQE22_11475 PF03717 Penicillin-binding Protein dimerisation domain MQE22_11475 PF00905 Penicillin binding protein transpeptidase domain MQE22_11480 PF01225 Mur ligase family, catalytic domain MQE22_11480 PF02875 Mur ligase family, glutamate ligase domain MQE22_11480 PF08245 Mur ligase middle domain MQE22_11485 PF08245 Mur ligase middle domain MQE22_11485 PF01225 Mur ligase family, catalytic domain MQE22_11485 PF02875 Mur ligase family, glutamate ligase domain MQE22_11490 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MQE22_11490 PF00953 Glycosyl transferase family 4 MQE22_11495 PF02875 Mur ligase family, glutamate ligase domain MQE22_11495 PF08245 Mur ligase middle domain MQE22_11500 PF01098 Cell cycle protein MQE22_11505 PF04101 Glycosyltransferase family 28 C-terminal domain MQE22_11505 PF03033 Glycosyltransferase family 28 N-terminal domain MQE22_11510 PF01225 Mur ligase family, catalytic domain MQE22_11510 PF02875 Mur ligase family, glutamate ligase domain MQE22_11510 PF08245 Mur ligase middle domain MQE22_11515 PF01565 FAD binding domain MQE22_11515 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MQE22_11520 PF01820 D-ala D-ala ligase N-terminus MQE22_11520 PF07478 D-ala D-ala ligase C-terminus MQE22_11525 PF03799 Cell division protein FtsQ MQE22_11525 PF08478 POTRA domain, FtsQ-type MQE22_11530 PF02491 SHS2 domain inserted in FTSA MQE22_11535 PF12327 FtsZ family, C-terminal domain MQE22_11535 PF00091 Tubulin/FtsZ family, GTPase domain MQE22_11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_11555 PF03466 LysR substrate binding domain MQE22_11560 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) MQE22_11565 PF00361 Proton-conducting membrane transporter MQE22_11565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MQE22_11570 PF06736 Protein of unknown function (DUF1211) MQE22_11580 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MQE22_11590 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MQE22_11590 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MQE22_11600 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MQE22_11600 PF10531 SLBB domain MQE22_11600 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MQE22_11605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MQE22_11605 PF00384 Molybdopterin oxidoreductase MQE22_11605 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MQE22_11610 PF00146 NADH dehydrogenase MQE22_11615 PF12838 4Fe-4S dicluster domain MQE22_11620 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MQE22_11625 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MQE22_11630 PF00361 Proton-conducting membrane transporter MQE22_11630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MQE22_11635 PF00361 Proton-conducting membrane transporter MQE22_11640 PF00361 Proton-conducting membrane transporter MQE22_11650 PF00146 NADH dehydrogenase MQE22_11660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MQE22_11660 PF00361 Proton-conducting membrane transporter MQE22_11665 PF00374 Nickel-dependent hydrogenase MQE22_11665 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MQE22_11665 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MQE22_11670 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MQE22_11675 PF00361 Proton-conducting membrane transporter MQE22_11680 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MQE22_11700 PF00300 Histidine phosphatase superfamily (branch 1) MQE22_11800 PF00437 Type II/IV secretion system protein MQE22_11805 PF04972 BON domain MQE22_11805 PF00263 Bacterial type II and III secretion system protein MQE22_11805 PF13629 Pilus formation protein N terminal region MQE22_11850 PF00691 OmpA family MQE22_11850 PF00223 Photosystem I psaA/psaB protein MQE22_11860 PF17284 Spermidine synthase tetramerisation domain MQE22_11870 PF00814 Glycoprotease family MQE22_11875 PF04305 Protein of unknown function (DUF455) MQE22_11905 PF00255 Glutathione peroxidase MQE22_11910 PF00579 tRNA synthetases class I (W and Y) MQE22_11935 PF01914 MarC family integral membrane protein MQE22_11945 PF01336 OB-fold nucleic acid binding domain MQE22_11945 PF00152 tRNA synthetases class II (D, K and N) MQE22_11945 PF02938 GAD domain MQE22_11950 PF03099 Biotin/lipoate A/B protein ligase family MQE22_11950 PF00293 NUDIX domain MQE22_11955 PF02445 Quinolinate synthetase A protein MQE22_11965 PF01709 Transcriptional regulator MQE22_11970 PF02075 Crossover junction endodeoxyribonuclease RuvC MQE22_11975 PF07499 RuvA, C-terminal domain MQE22_11975 PF01330 RuvA N terminal domain MQE22_11980 PF05496 Holliday junction DNA helicase RuvB P-loop domain MQE22_11980 PF17864 RuvB AAA lid domain MQE22_11980 PF05491 RuvB C-terminal winged helix domain MQE22_11985 PF03061 Thioesterase superfamily MQE22_11990 PF01618 MotA/TolQ/ExbB proton channel family MQE22_11995 PF02472 Biopolymer transport protein ExbD/TolR MQE22_12005 PF04052 TolB amino-terminal domain MQE22_12005 PF07676 WD40-like Beta Propeller Repeat MQE22_12010 PF01810 LysE type translocator MQE22_12015 PF06508 Queuosine biosynthesis protein QueC MQE22_12020 PF04055 Radical SAM superfamily MQE22_12030 PF00691 OmpA family MQE22_12035 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MQE22_12035 PF03900 Porphobilinogen deaminase, C-terminal domain MQE22_12045 PF00490 Delta-aminolevulinic acid dehydratase MQE22_12055 PF00563 EAL domain MQE22_12055 PF08668 HDOD domain MQE22_12075 PF01625 Peptide methionine sulfoxide reductase MQE22_12080 PF01641 SelR domain MQE22_12085 PF00990 Diguanylate cyclase, GGDEF domain MQE22_12090 PF02371 Transposase IS116/IS110/IS902 family MQE22_12090 PF01548 Transposase MQE22_12100 PF00158 Sigma-54 interaction domain MQE22_12100 PF00072 Response regulator receiver domain MQE22_12110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_12110 PF00512 His Kinase A (phospho-acceptor) domain MQE22_12115 PF01979 Amidohydrolase family MQE22_12120 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MQE22_12120 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MQE22_12125 PF00156 Phosphoribosyl transferase domain MQE22_12130 PF03652 Holliday junction resolvase MQE22_12135 PF02622 Uncharacterized ACR, COG1678 MQE22_12140 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MQE22_12140 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MQE22_12150 PF00285 Citrate synthase, C-terminal domain MQE22_12155 PF01521 Iron-sulphur cluster biosynthesis MQE22_12165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MQE22_12165 PF07992 Pyridine nucleotide-disulphide oxidoreductase MQE22_12170 PF02780 Transketolase, C-terminal domain MQE22_12170 PF00364 Biotin-requiring enzyme MQE22_12170 PF02779 Transketolase, pyrimidine binding domain MQE22_12175 PF00676 Dehydrogenase E1 component MQE22_12190 PF00563 EAL domain MQE22_12190 PF03707 Bacterial signalling protein N terminal repeat MQE22_12190 PF00990 Diguanylate cyclase, GGDEF domain MQE22_12195 PF03707 Bacterial signalling protein N terminal repeat MQE22_12195 PF00990 Diguanylate cyclase, GGDEF domain MQE22_12195 PF00563 EAL domain MQE22_12200 PF00563 EAL domain MQE22_12200 PF10388 EAL-domain associated signalling protein domain MQE22_12205 PF01118 Semialdehyde dehydrogenase, NAD binding domain MQE22_12205 PF02774 Semialdehyde dehydrogenase, dimerisation domain MQE22_12210 PF00380 Ribosomal protein S9/S16 MQE22_12215 PF00572 Ribosomal protein L13 MQE22_12225 PF02152 Dihydroneopterin aldolase MQE22_12230 PF02660 Glycerol-3-phosphate acyltransferase MQE22_12235 PF02675 S-adenosylmethionine decarboxylase MQE22_12240 PF00005 ABC transporter MQE22_12245 PF02405 Permease MlaE MQE22_12250 PF02470 MlaD protein MQE22_12265 PF00005 ABC transporter MQE22_12270 PF01479 S4 domain MQE22_12275 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MQE22_12285 PF00398 Ribosomal RNA adenine dimethylase MQE22_12300 PF00750 tRNA synthetases class I (R) MQE22_12300 PF05746 DALR anticodon binding domain MQE22_12300 PF03485 Arginyl tRNA synthetase N terminal domain MQE22_12305 PF00924 Mechanosensitive ion channel MQE22_12305 PF12795 Mechanosensitive ion channel porin domain MQE22_12305 PF12794 Mechanosensitive ion channel inner membrane domain 1 MQE22_12310 PF07690 Major Facilitator Superfamily MQE22_12315 PF03466 LysR substrate binding domain MQE22_12315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_12320 PF05175 Methyltransferase small domain MQE22_12325 PF03372 Endonuclease/Exonuclease/phosphatase family MQE22_12340 PF13417 Glutathione S-transferase, N-terminal domain MQE22_12340 PF00043 Glutathione S-transferase, C-terminal domain MQE22_12345 PF03372 Endonuclease/Exonuclease/phosphatase family MQE22_12350 PF00762 Ferrochelatase MQE22_12355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MQE22_12360 PF03702 Anhydro-N-acetylmuramic acid kinase MQE22_12365 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MQE22_12365 PF01488 Shikimate / quinate 5-dehydrogenase MQE22_12365 PF08501 Shikimate dehydrogenase substrate binding domain MQE22_12370 PF00437 Type II/IV secretion system protein MQE22_12370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MQE22_12375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MQE22_12375 PF00512 His Kinase A (phospho-acceptor) domain MQE22_12380 PF02954 Bacterial regulatory protein, Fis family MQE22_12380 PF00072 Response regulator receiver domain MQE22_12380 PF00158 Sigma-54 interaction domain MQE22_12385 PF06750 Bacterial Peptidase A24 N-terminal domain MQE22_12385 PF01478 Type IV leader peptidase family MQE22_12390 PF01121 Dephospho-CoA kinase MQE22_12400 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain MQE22_12405 PF05818 Enterobacterial TraT complement resistance protein MQE22_12435 PF01464 Transglycosylase SLT domain MQE22_12440 PF02954 Bacterial regulatory protein, Fis family MQE22_12455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MQE22_12455 PF00289 Biotin carboxylase, N-terminal domain MQE22_12455 PF02785 Biotin carboxylase C-terminal domain MQE22_12460 PF00364 Biotin-requiring enzyme MQE22_12465 PF01220 Dehydroquinase class II MQE22_12470 PF00881 Nitroreductase family MQE22_12475 PF12848 ABC transporter MQE22_12475 PF00005 ABC transporter MQE22_12480 PF02261 Aspartate decarboxylase MQE22_12490 PF01578 Cytochrome C assembly protein MQE22_12495 PF05140 ResB-like family MQE22_12500 PF01926 50S ribosome-binding GTPase MQE22_12510 PF01367 5'-3' exonuclease, C-terminal SAM fold MQE22_12510 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MQE22_12510 PF00476 DNA polymerase family A MQE22_12510 PF01612 3'-5' exonuclease MQE22_12515 PF03641 Possible lysine decarboxylase MQE22_12525 PF01636 Phosphotransferase enzyme family MQE22_12540 PF01381 Helix-turn-helix MQE22_12545 PF05973 Phage derived protein Gp49-like (DUF891) MQE22_12570 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system MQE22_12575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MQE22_12615 PF14698 Argininosuccinate lyase C-terminal MQE22_12615 PF00206 Lyase MQE22_12625 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MQE22_12625 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MQE22_12630 PF13091 PLD-like domain MQE22_12635 PF01979 Amidohydrolase family MQE22_12640 PF03717 Penicillin-binding Protein dimerisation domain MQE22_12640 PF00905 Penicillin binding protein transpeptidase domain MQE22_12645 PF00691 OmpA family MQE22_12665 PF02421 Ferrous iron transport protein B MQE22_12665 PF07670 Nucleoside recognition MQE22_12665 PF07664 Ferrous iron transport protein B C terminus MQE22_12665 PF17910 FeoB cytosolic helical domain MQE22_12675 PF04055 Radical SAM superfamily MQE22_12675 PF18693 TRAM domain MQE22_12675 PF00919 Uncharacterized protein family UPF0004 MQE22_12680 PF04324 BFD-like [2Fe-2S] binding domain MQE22_12680 PF01106 NifU-like domain MQE22_12680 PF01592 NifU-like N terminal domain MQE22_12695 PF03960 ArsC family MQE22_12700 PF06969 HemN C-terminal domain MQE22_12700 PF04055 Radical SAM superfamily MQE22_12705 PF03466 LysR substrate binding domain MQE22_12705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MQE22_12710 PF07396 Phosphate-selective porin O and P MQE22_12725 PF00691 OmpA family MQE22_12725 PF13488 Glycine zipper MQE22_12730 PF00689 Cation transporting ATPase, C-terminus MQE22_12730 PF00690 Cation transporter/ATPase, N-terminus MQE22_12735 PF01075 Glycosyltransferase family 9 (heptosyltransferase) MQE22_12745 PF02913 FAD linked oxidases, C-terminal domain MQE22_12745 PF01565 FAD binding domain MQE22_12750 PF13580 SIS domain MQE22_12755 PF02021 Uncharacterised protein family UPF0102 MQE22_12765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MQE22_12775 PF00589 Phage integrase family MQE22_12785 PF01555 DNA methylase MQE22_12795 PF00795 Carbon-nitrogen hydrolase MQE22_12800 PF02534 Type IV secretory system Conjugative DNA transfer MQE22_12820 PF01850 PIN domain MQE22_12845 PF13362 Toprim domain MQE22_12845 PF18818 Metallopeptidase superfamily domain MQE22_12845 PF08401 Domain of unknown function (DUF1738) MQE22_12865 PF00717 Peptidase S24-like MQE22_12865 PF01726 LexA DNA binding domain MQE22_12885 PF00216 Bacterial DNA-binding protein MQE22_12915 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 MQE22_12915 PF13542 Helix-turn-helix domain of transposase family ISL3 MQE22_12915 PF01610 Transposase MQE22_12920 PF03358 NADPH-dependent FMN reductase MQE22_12925 PF02040 Arsenical pump membrane protein MQE22_12935 PF01451 Low molecular weight phosphotyrosine protein phosphatase MQE22_12945 PF08281 Sigma-70, region 4 MQE22_12945 PF04542 Sigma-70 region 2 MQE22_12965 PF02321 Outer membrane efflux protein MQE22_12970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MQE22_12975 PF00005 ABC transporter MQE22_12980 PF00005 ABC transporter MQE22_13005 PF00795 Carbon-nitrogen hydrolase MQE22_13020 PF05114 Protein of unknown function (DUF692) MQE22_13040 PF02683 Cytochrome C biogenesis protein transmembrane region MQE22_13040 PF11412 Disulphide bond corrector protein DsbC MQE22_13060 PF07690 Major Facilitator Superfamily MQE22_13070 PF00753 Metallo-beta-lactamase superfamily MQE22_13070 PF00581 Rhodanese-like domain MQE22_13085 PF01209 ubiE/COQ5 methyltransferase family MQE22_13105 PF01022 Bacterial regulatory protein, arsR family MQE22_13115 PF11799 impB/mucB/samB family C-terminal domain MQE22_13115 PF00817 impB/mucB/samB family MQE22_13145 PF00436 Single-strand binding protein family MQE22_13150 PF00476 DNA polymerase family A MQE22_13150 PF01367 5'-3' exonuclease, C-terminal SAM fold MQE22_13150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MQE22_13150 PF09281 Taq polymerase, exonuclease MQE22_13160 PF02371 Transposase IS116/IS110/IS902 family MQE22_13160 PF01548 Transposase MQE22_13165 PF10548 P22AR C-terminal domain MQE22_13165 PF08346 AntA/AntB antirepressor MQE22_13190 PF01131 DNA topoisomerase MQE22_13190 PF01751 Toprim domain MQE22_13235 PF00437 Type II/IV secretion system protein MQE22_13240 PF08721 TnsA endonuclease C terminal MQE22_13240 PF08722 TnsA endonuclease N terminal MQE22_13245 PF00665 Integrase core domain MQE22_13250 PF13401 AAA domain MQE22_13250 PF11426 Tn7 transposition regulator TnsC MQE22_13310 PF00873 AcrB/AcrD/AcrF family MQE22_13340 PF13411 MerR HTH family regulatory protein MQE22_13345 PF01545 Cation efflux family MQE22_13375 PF00403 Heavy-metal-associated domain MQE22_13385 PF00403 Heavy-metal-associated domain MQE22_13405 PF03135 CagE, TrbE, VirB family, component of type IV transporter system MQE22_13435 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system MQE22_13445 PF01965 DJ-1/PfpI family MQE22_13475 PF03524 Conjugal transfer protein MQE22_13480 PF03743 Bacterial conjugation TrbI-like protein MQE22_13490 PF01883 Iron-sulfur cluster assembly protein MQE22_13490 PF10609 NUBPL iron-transfer P-loop NTPase MQE22_13495 PF17762 HTH domain found in ParB protein MQE22_13495 PF02195 ParB-like nuclease domain MQE22_13500 PF00700 Bacterial flagellin C-terminal helical region MQE22_13500 PF07196 Flagellin hook IN motif MQE22_13500 PF00669 Bacterial flagellin N-terminal helical region MQE22_13505 PF05872 Bacterial protein of unknown function (DUF853) MQE22_13520 PF00005 ABC transporter MQE22_13520 PF12848 ABC transporter MQE22_13530 PF00468 Ribosomal protein L34 MQE22_13535 PF00825 Ribonuclease P MQE22_13540 PF01809 Putative membrane protein insertion efficiency factor MQE22_13545 PF14849 YidC periplasmic domain MQE22_13545 PF02096 60Kd inner membrane protein MQE22_13550 PF01926 50S ribosome-binding GTPase MQE22_13550 PF12631 MnmE helical domain MQE22_13550 PF10396 GTP-binding protein TrmE N-terminus MQE22_13565 PF00011 Hsp20/alpha crystallin family MQE22_13570 PF03279 Bacterial lipid A biosynthesis acyltransferase MQE22_13575 PF00924 Mechanosensitive ion channel MQE22_13575 PF05552 Conserved TM helix MQE22_13595 PF01467 Cytidylyltransferase-like MQE22_13605 PF02590 Predicted SPOUT methyltransferase MQE22_13620 PF02545 Maf-like protein MQE22_13625 PF10150 Ribonuclease E/G family MQE22_13625 PF00575 S1 RNA binding domain MQE22_13635 PF01230 HIT domain MQE22_13640 PF00202 Aminotransferase class-III MQE22_13645 PF02581 Thiamine monophosphate synthase MQE22_13650 PF08543 Phosphomethylpyrimidine kinase MQE22_13660 PF00106 short chain dehydrogenase MQE22_13675 PF11740 Plasmid replication region DNA-binding N-term MQE22_13695 PF05016 ParE toxin of type II toxin-antitoxin system, parDE MQE22_13700 PF01402 Ribbon-helix-helix protein, copG family MQE22_13720 PF00239 Resolvase, N terminal domain MQE22_13720 PF02796 Helix-turn-helix domain of resolvase MQE22_13735 PF00535 Glycosyl transferase family 2