locus-tag class description ACP_0001 PF02589 LUD domain ACP_0002 PF11870 Domain of unknown function (DUF3390) ACP_0002 PF02589 LUD domain ACP_0002 PF13183 4Fe-4S dicluster domain ACP_0003 PF02754 Cysteine-rich domain ACP_0010 PF07971 Glycosyl hydrolase family 92 ACP_0010 PF17678 Glycosyl hydrolase family 92 N-terminal domain ACP_0012 PF00529 HlyD membrane-fusion protein of T1SS ACP_0012 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_0015 PF06964 Alpha-L-arabinofuranosidase C-terminal domain ACP_0018 PF03466 LysR substrate binding domain ACP_0018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACP_0019 PF00135 Carboxylesterase family ACP_0020 PF14310 Fibronectin type III-like domain ACP_0020 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACP_0020 PF00933 Glycosyl hydrolase family 3 N terminal domain ACP_0021 PF00294 pfkB family carbohydrate kinase ACP_0023 PF00593 TonB dependent receptor ACP_0024 PF08244 Glycosyl hydrolases family 32 C terminal ACP_0024 PF00251 Glycosyl hydrolases family 32 N-terminal domain ACP_0025 PF00083 Sugar (and other) transporter ACP_0028 PF01380 SIS domain ACP_0029 PF02838 Glycosyl hydrolase family 20, domain 2 ACP_0029 PF00728 Glycosyl hydrolase family 20, catalytic domain ACP_0030 PF00704 Glycosyl hydrolases family 18 ACP_0030 PF00041 Fibronectin type III domain ACP_0031 PF10282 Lactonase, 7-bladed beta-propeller ACP_0032 PF02447 GntP family permease ACP_0034 PF07969 Amidohydrolase family ACP_0035 PF14031 Putative serine dehydratase domain ACP_0035 PF01168 Alanine racemase, N-terminal domain ACP_0036 PF02838 Glycosyl hydrolase family 20, domain 2 ACP_0036 PF00728 Glycosyl hydrolase family 20, catalytic domain ACP_0036 PF07691 PA14 domain ACP_0038 PF00704 Glycosyl hydrolases family 18 ACP_0039 PF08220 DeoR-like helix-turn-helix domain ACP_0039 PF00455 DeoR C terminal sensor domain ACP_0043 PF01943 Polysaccharide biosynthesis protein ACP_0049 PF17801 Alpha galactosidase C-terminal beta sandwich domain ACP_0049 PF16499 Alpha galactosidase A ACP_0050 PF00676 Dehydrogenase E1 component ACP_0050 PF16870 2-oxoglutarate dehydrogenase C-terminal ACP_0050 PF02779 Transketolase, pyrimidine binding domain ACP_0050 PF16078 2-oxoglutarate dehydrogenase N-terminus ACP_0055 PF00313 'Cold-shock' DNA-binding domain ACP_0056 PF05193 Peptidase M16 inactive domain ACP_0056 PF00675 Insulinase (Peptidase family M16) ACP_0057 PF04055 Radical SAM superfamily ACP_0059 PF13476 AAA domain ACP_0060 PF01933 Uncharacterised protein family UPF0052 ACP_0064 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ACP_0064 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ACP_0065 PF00356 Bacterial regulatory proteins, lacI family ACP_0066 PF16874 Glycosyl hydrolase family 36 C-terminal domain ACP_0066 PF16875 Glycosyl hydrolase family 36 N-terminal domain ACP_0067 PF00593 TonB dependent receptor ACP_0072 PF02837 Glycosyl hydrolases family 2, sugar binding domain ACP_0072 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 ACP_0072 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ACP_0072 PF00703 Glycosyl hydrolases family 2 ACP_0072 PF16355 Domain of unknown function (DUF4982) ACP_0075 PF03552 Cellulose synthase ACP_0075 PF03170 Bacterial cellulose synthase subunit ACP_0075 PF00535 Glycosyl transferase family 2 ACP_0075 PF07238 PilZ domain ACP_0076 PF01270 Glycosyl hydrolases family 8 ACP_0080 PF02702 Osmosensitive K+ channel His kinase sensor domain ACP_0080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0080 PF00512 His Kinase A (phospho-acceptor) domain ACP_0080 PF13492 GAF domain ACP_0080 PF13493 Domain of unknown function (DUF4118) ACP_0081 PF00512 His Kinase A (phospho-acceptor) domain ACP_0081 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0082 PF00654 Voltage gated chloride channel ACP_0085 PF02540 NAD synthase ACP_0086 PF01969 Protein of unknown function DUF111 ACP_0087 PF00731 AIR carboxylase ACP_0089 PF00180 Isocitrate/isopropylmalate dehydrogenase ACP_0090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACP_0090 PF00056 lactate/malate dehydrogenase, NAD binding domain ACP_0095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACP_0096 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACP_0098 PF00360 Phytochrome region ACP_0098 PF00563 EAL domain ACP_0098 PF01590 GAF domain ACP_0098 PF00990 Diguanylate cyclase, GGDEF domain ACP_0102 PF02910 Fumarate reductase flavoprotein C-term ACP_0102 PF00890 FAD binding domain ACP_0104 PF01725 Ham1 family ACP_0107 PF00691 OmpA family ACP_0107 PF13677 Membrane MotB of proton-channel complex MotA/MotB ACP_0108 PF01618 MotA/TolQ/ExbB proton channel family ACP_0110 PF00700 Bacterial flagellin C-terminal helical region ACP_0110 PF00669 Bacterial flagellin N-terminal helical region ACP_0110 PF07196 Flagellin hook IN motif ACP_0113 PF00005 ABC transporter ACP_0113 PF00664 ABC transporter transmembrane region ACP_0114 PF03739 Lipopolysaccharide export system permease LptF/LptG ACP_0120 PF02581 Thiamine monophosphate synthase ACP_0121 PF13520 Amino acid permease ACP_0122 PF13520 Amino acid permease ACP_0125 PF00365 Phosphofructokinase ACP_0127 PF00132 Bacterial transferase hexapeptide (six repeats) ACP_0128 PF00557 Metallopeptidase family M24 ACP_0128 PF01321 Creatinase/Prolidase N-terminal domain ACP_0129 PF00364 Biotin-requiring enzyme ACP_0131 PF00289 Biotin carboxylase, N-terminal domain ACP_0131 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACP_0131 PF02785 Biotin carboxylase C-terminal domain ACP_0133 PF02203 Tar ligand binding domain homologue ACP_0133 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACP_0133 PF00672 HAMP domain ACP_0134 PF01850 PIN domain ACP_0135 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ACP_0136 PF02621 Menaquinone biosynthesis ACP_0137 PF02632 BioY family ACP_0139 PF03091 CutA1 divalent ion tolerance protein ACP_0140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACP_0140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACP_0140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACP_0140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACP_0144 PF00331 Glycosyl hydrolase family 10 ACP_0144 PF02018 Carbohydrate binding domain ACP_0146 PF01738 Dienelactone hydrolase family ACP_0148 PF00312 Ribosomal protein S15 ACP_0149 PF00013 KH domain ACP_0149 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACP_0149 PF01138 3' exoribonuclease family, domain 1 ACP_0149 PF03725 3' exoribonuclease family, domain 2 ACP_0149 PF00575 S1 RNA binding domain ACP_0153 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACP_0155 PF13580 SIS domain ACP_0156 PF00144 Beta-lactamase ACP_0157 PF00990 Diguanylate cyclase, GGDEF domain ACP_0157 PF05230 MASE2 domain ACP_0158 PF10502 Signal peptidase, peptidase S26 ACP_0159 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACP_0160 PF00672 HAMP domain ACP_0160 PF07228 Stage II sporulation protein E (SpoIIE) ACP_0162 PF01790 Prolipoprotein diacylglyceryl transferase ACP_0164 PF04940 Sensors of blue-light using FAD ACP_0164 PF00563 EAL domain ACP_0166 PF00005 ABC transporter ACP_0166 PF17755 UvrA DNA-binding domain ACP_0166 PF17760 UvrA interaction domain ACP_0169 PF00067 Cytochrome P450 ACP_0170 PF06750 Bacterial Peptidase A24 N-terminal domain ACP_0170 PF01478 Type IV leader peptidase family ACP_0171 PF03819 MazG nucleotide pyrophosphohydrolase domain ACP_0173 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ACP_0173 PF13378 Enolase C-terminal domain-like ACP_0176 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACP_0176 PF02770 Acyl-CoA dehydrogenase, middle domain ACP_0176 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACP_0177 PF03707 Bacterial signalling protein N terminal repeat ACP_0177 PF00563 EAL domain ACP_0177 PF00990 Diguanylate cyclase, GGDEF domain ACP_0178 PF00005 ABC transporter ACP_0179 PF02405 Permease MlaE ACP_0180 PF00158 Sigma-54 interaction domain ACP_0180 PF02954 Bacterial regulatory protein, Fis family ACP_0180 PF00072 Response regulator receiver domain ACP_0181 PF13188 PAS domain ACP_0181 PF00989 PAS fold ACP_0181 PF13426 PAS domain ACP_0181 PF00512 His Kinase A (phospho-acceptor) domain ACP_0181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0182 PF03275 UDP-galactopyranose mutase ACP_0184 PF00069 Protein kinase domain ACP_0184 PF03793 PASTA domain ACP_0186 PF00271 Helicase conserved C-terminal domain ACP_0186 PF08482 ATP-dependent helicase C-terminal ACP_0186 PF00270 DEAD/DEAH box helicase ACP_0186 PF04408 Helicase associated domain (HA2) ACP_0188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0188 PF00512 His Kinase A (phospho-acceptor) domain ACP_0188 PF00989 PAS fold ACP_0190 PF00593 TonB dependent receptor ACP_0191 PF12833 Helix-turn-helix domain ACP_0191 PF12852 Cupin ACP_0192 PF01370 NAD dependent epimerase/dehydratase family ACP_0194 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACP_0194 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACP_0195 PF08450 SMP-30/Gluconolactonase/LRE-like region ACP_0197 PF00920 Dehydratase family ACP_0199 PF00440 Bacterial regulatory proteins, tetR family ACP_0201 PF13460 NAD(P)H-binding ACP_0202 PF00106 short chain dehydrogenase ACP_0203 PF08240 Alcohol dehydrogenase GroES-like domain ACP_0203 PF00107 Zinc-binding dehydrogenase ACP_0206 PF00106 short chain dehydrogenase ACP_0209 PF00990 Diguanylate cyclase, GGDEF domain ACP_0209 PF00072 Response regulator receiver domain ACP_0213 PF00141 Peroxidase ACP_0214 PF11799 impB/mucB/samB family C-terminal domain ACP_0214 PF11798 IMS family HHH motif ACP_0214 PF00817 impB/mucB/samB family ACP_0215 PF03466 LysR substrate binding domain ACP_0215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACP_0221 PF00561 alpha/beta hydrolase fold ACP_0222 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACP_0222 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACP_0223 PF00135 Carboxylesterase family ACP_0224 PF00005 ABC transporter ACP_0224 PF03459 TOBE domain ACP_0225 PF00528 Binding-protein-dependent transport system inner membrane component ACP_0228 PF00291 Pyridoxal-phosphate dependent enzyme ACP_0229 PF00288 GHMP kinases N terminal domain ACP_0230 PF00085 Thioredoxin ACP_0231 PF01726 LexA DNA binding domain ACP_0231 PF00717 Peptidase S24-like ACP_0232 PF00072 Response regulator receiver domain ACP_0232 PF00486 Transcriptional regulatory protein, C terminal ACP_0233 PF00158 Sigma-54 interaction domain ACP_0233 PF01590 GAF domain ACP_0235 PF00460 Flagella basal body rod protein ACP_0235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACP_0236 PF02049 Flagellar hook-basal body complex protein FliE ACP_0237 PF01514 Secretory protein of YscJ/FliF family ACP_0237 PF08345 Flagellar M-ring protein C-terminal ACP_0238 PF14841 FliG middle domain ACP_0238 PF01706 FliG C-terminal domain ACP_0238 PF14842 FliG N-terminal domain ACP_0240 PF18269 T3SS EscN ATPase C-terminal domain ACP_0240 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACP_0240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACP_0244 PF00460 Flagella basal body rod protein ACP_0244 PF07559 Flagellar basal body protein FlaE ACP_0244 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACP_0246 PF00813 FliP family ACP_0247 PF01313 Bacterial export proteins, family 3 ACP_0248 PF01311 Bacterial export proteins, family 1 ACP_0249 PF01312 FlhB HrpN YscU SpaS Family ACP_0250 PF00771 FHIPEP family ACP_0251 PF04542 Sigma-70 region 2 ACP_0251 PF04539 Sigma-70 region 3 ACP_0251 PF04545 Sigma-70, region 4 ACP_0252 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACP_0252 PF04509 CheC-like family ACP_0254 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACP_0254 PF00460 Flagella basal body rod protein ACP_0255 PF00460 Flagella basal body rod protein ACP_0255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACP_0256 PF02107 Flagellar L-ring protein ACP_0257 PF02119 Flagellar P-ring protein ACP_0261 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACP_0261 PF00460 Flagella basal body rod protein ACP_0262 PF05161 MOFRL family ACP_0262 PF13660 Domain of unknown function (DUF4147) ACP_0263 PF00669 Bacterial flagellin N-terminal helical region ACP_0266 PF07687 Peptidase dimerisation domain ACP_0266 PF01546 Peptidase family M20/M25/M40 ACP_0267 PF03190 Protein of unknown function, DUF255 ACP_0268 PF06491 Disulphide isomerase ACP_0271 PF13180 PDZ domain ACP_0271 PF17820 PDZ domain ACP_0273 PF13229 Right handed beta helix region ACP_0273 PF12708 Pectate lyase superfamily protein ACP_0273 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ACP_0275 PF01554 MatE ACP_0276 PF02082 Transcriptional regulator ACP_0277 PF13277 YmdB-like protein ACP_0278 PF00152 tRNA synthetases class II (D, K and N) ACP_0278 PF01336 OB-fold nucleic acid binding domain ACP_0282 PF00119 ATP synthase A chain ACP_0283 PF00137 ATP synthase subunit C ACP_0284 PF00361 Proton-conducting membrane transporter ACP_0285 PF00361 Proton-conducting membrane transporter ACP_0286 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACP_0286 PF00361 Proton-conducting membrane transporter ACP_0287 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACP_0288 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACP_0289 PF00146 NADH dehydrogenase ACP_0290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACP_0290 PF12838 4Fe-4S dicluster domain ACP_0290 PF00384 Molybdopterin oxidoreductase ACP_0290 PF01568 Molydopterin dinucleotide binding domain ACP_0290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACP_0291 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACP_0291 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACP_0291 PF10531 SLBB domain ACP_0294 PF00374 Nickel-dependent hydrogenase ACP_0294 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACP_0295 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACP_0296 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACP_0300 PF03952 Enolase, N-terminal domain ACP_0300 PF00113 Enolase, C-terminal TIM barrel domain ACP_0302 PF01676 Metalloenzyme superfamily ACP_0302 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACP_0307 PF02583 Metal-sensitive transcriptional repressor ACP_0308 PF00664 ABC transporter transmembrane region ACP_0308 PF00005 ABC transporter ACP_0311 PF01008 Initiation factor 2 subunit family ACP_0313 PF04209 homogentisate 1,2-dioxygenase ACP_0316 PF00356 Bacterial regulatory proteins, lacI family ACP_0317 PF03447 Homoserine dehydrogenase, NAD binding domain ACP_0317 PF00742 Homoserine dehydrogenase ACP_0317 PF01842 ACT domain ACP_0319 PF00248 Aldo/keto reductase family ACP_0320 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACP_0320 PF01568 Molydopterin dinucleotide binding domain ACP_0320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACP_0320 PF00384 Molybdopterin oxidoreductase ACP_0320 PF12838 4Fe-4S dicluster domain ACP_0321 PF07849 Protein of unknown function (DUF1641) ACP_0322 PF00356 Bacterial regulatory proteins, lacI family ACP_0327 PF00701 Dihydrodipicolinate synthetase family ACP_0328 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ACP_0328 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ACP_0328 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACP_0329 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACP_0332 PF00211 Adenylate and Guanylate cyclase catalytic domain ACP_0332 PF00069 Protein kinase domain ACP_0334 PF05690 Thiazole biosynthesis protein ThiG ACP_0334 PF02597 ThiS family ACP_0335 PF00528 Binding-protein-dependent transport system inner membrane component ACP_0335 PF12911 N-terminal TM domain of oligopeptide transport permease C ACP_0337 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ACP_0338 PF01266 FAD dependent oxidoreductase ACP_0343 PF01565 FAD binding domain ACP_0343 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACP_0346 PF16326 ABC transporter C-terminal domain ACP_0346 PF00005 ABC transporter ACP_0346 PF12848 ABC transporter ACP_0347 PF00005 ABC transporter ACP_0347 PF12848 ABC transporter ACP_0349 PF07670 Nucleoside recognition ACP_0349 PF02421 Ferrous iron transport protein B ACP_0349 PF07664 Ferrous iron transport protein B C terminus ACP_0355 PF00456 Transketolase, thiamine diphosphate binding domain ACP_0355 PF17831 Pyruvate dehydrogenase E1 component middle domain ACP_0356 PF00676 Dehydrogenase E1 component ACP_0361 PF01960 ArgJ family ACP_0362 PF00005 ABC transporter ACP_0393 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ACP_0393 PF10135 Rod binding protein ACP_0420 PF00925 GTP cyclohydrolase II ACP_0420 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACP_0421 PF00155 Aminotransferase class I and II ACP_0422 PF00753 Metallo-beta-lactamase superfamily ACP_0424 PF00356 Bacterial regulatory proteins, lacI family ACP_0426 PF00072 Response regulator receiver domain ACP_0426 PF00486 Transcriptional regulatory protein, C terminal ACP_0429 PF03814 Potassium-transporting ATPase A subunit ACP_0431 PF02669 K+-transporting ATPase, c chain ACP_0435 PF00593 TonB dependent receptor ACP_0441 PF00106 short chain dehydrogenase ACP_0443 PF08240 Alcohol dehydrogenase GroES-like domain ACP_0443 PF00107 Zinc-binding dehydrogenase ACP_0444 PF00561 alpha/beta hydrolase fold ACP_0446 PF03060 Nitronate monooxygenase ACP_0447 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0447 PF13493 Domain of unknown function (DUF4118) ACP_0447 PF00512 His Kinase A (phospho-acceptor) domain ACP_0447 PF00989 PAS fold ACP_0447 PF08447 PAS fold ACP_0447 PF13426 PAS domain ACP_0448 PF00072 Response regulator receiver domain ACP_0448 PF00196 Bacterial regulatory proteins, luxR family ACP_0449 PF00196 Bacterial regulatory proteins, luxR family ACP_0449 PF00072 Response regulator receiver domain ACP_0450 PF00665 Integrase core domain ACP_0450 PF13276 HTH-like domain ACP_0450 PF13333 Integrase core domain ACP_0455 PF03840 Preprotein translocase SecG subunit ACP_0456 PF01590 GAF domain ACP_0456 PF00563 EAL domain ACP_0456 PF00360 Phytochrome region ACP_0456 PF00990 Diguanylate cyclase, GGDEF domain ACP_0458 PF01174 SNO glutamine amidotransferase family ACP_0459 PF01680 SOR/SNZ family ACP_0460 PF00654 Voltage gated chloride channel ACP_0462 PF00990 Diguanylate cyclase, GGDEF domain ACP_0462 PF08448 PAS fold ACP_0463 PF00919 Uncharacterized protein family UPF0004 ACP_0463 PF04055 Radical SAM superfamily ACP_0463 PF01938 TRAM domain ACP_0464 PF02577 Bifunctional nuclease ACP_0467 PF02322 Cytochrome bd terminal oxidase subunit II ACP_0468 PF01654 Cytochrome bd terminal oxidase subunit I ACP_0474 PF00027 Cyclic nucleotide-binding domain ACP_0474 PF13545 Crp-like helix-turn-helix domain ACP_0475 PF00158 Sigma-54 interaction domain ACP_0475 PF01590 GAF domain ACP_0475 PF02954 Bacterial regulatory protein, Fis family ACP_0481 PF01515 Phosphate acetyl/butaryl transferase ACP_0482 PF00675 Insulinase (Peptidase family M16) ACP_0482 PF05193 Peptidase M16 inactive domain ACP_0485 PF00578 AhpC/TSA family ACP_0489 PF00133 tRNA synthetases class I (I, L, M and V) ACP_0489 PF06827 Zinc finger found in FPG and IleRS ACP_0489 PF08264 Anticodon-binding domain of tRNA ACP_0490 PF01252 Signal peptidase (SPase) II ACP_0491 PF12169 DNA polymerase III subunits gamma and tau domain III ACP_0492 PF02575 YbaB/EbfC DNA-binding family ACP_0493 PF00486 Transcriptional regulatory protein, C terminal ACP_0493 PF00072 Response regulator receiver domain ACP_0494 PF00005 ABC transporter ACP_0496 PF00512 His Kinase A (phospho-acceptor) domain ACP_0496 PF09456 RcsC Alpha-Beta-Loop (ABL) ACP_0496 PF00072 Response regulator receiver domain ACP_0496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0497 PF00072 Response regulator receiver domain ACP_0498 PF00512 His Kinase A (phospho-acceptor) domain ACP_0498 PF00989 PAS fold ACP_0498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0499 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACP_0499 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACP_0501 PF00691 OmpA family ACP_0502 PF04052 TolB amino-terminal domain ACP_0502 PF07676 WD40-like Beta Propeller Repeat ACP_0503 PF03544 Gram-negative bacterial TonB protein C-terminal ACP_0504 PF02472 Biopolymer transport protein ExbD/TolR ACP_0505 PF01618 MotA/TolQ/ExbB proton channel family ACP_0506 PF13476 AAA domain ACP_0511 PF13662 Toprim domain ACP_0511 PF02132 RecR protein ACP_0513 PF01743 Poly A polymerase head domain ACP_0513 PF12627 Probable RNA and SrmB- binding site of polymerase A ACP_0513 PF01966 HD domain ACP_0515 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACP_0515 PF00132 Bacterial transferase hexapeptide (six repeats) ACP_0517 PF00360 Phytochrome region ACP_0517 PF00990 Diguanylate cyclase, GGDEF domain ACP_0517 PF01590 GAF domain ACP_0517 PF00563 EAL domain ACP_0519 PF02971 Formiminotransferase domain ACP_0519 PF07837 Formiminotransferase domain, N-terminal subdomain ACP_0521 PF01709 Transcriptional regulator ACP_0522 PF00248 Aldo/keto reductase family ACP_0524 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_0526 PF08323 Starch synthase catalytic domain ACP_0526 PF00534 Glycosyl transferases group 1 ACP_0528 PF00398 Ribosomal RNA adenine dimethylase ACP_0531 PF02075 Crossover junction endodeoxyribonuclease RuvC ACP_0532 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACP_0534 PF05690 Thiazole biosynthesis protein ThiG ACP_0537 PF00593 TonB dependent receptor ACP_0538 PF00588 SpoU rRNA Methylase family ACP_0543 PF01425 Amidase ACP_0544 PF00313 'Cold-shock' DNA-binding domain ACP_0549 PF00593 TonB dependent receptor ACP_0549 PF00593 TonB dependent receptor ACP_0550 PF13472 GDSL-like Lipase/Acylhydrolase family ACP_0552 PF01301 Glycosyl hydrolases family 35 ACP_0554 PF00295 Glycosyl hydrolases family 28 ACP_0555 PF06379 L-rhamnose-proton symport protein (RhaT) ACP_0556 PF01261 Xylose isomerase-like TIM barrel ACP_0558 PF00596 Class II Aldolase and Adducin N-terminal domain ACP_0559 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACP_0559 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ACP_0560 PF00657 GDSL-like Lipase/Acylhydrolase ACP_0572 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACP_0572 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACP_0574 PF13472 GDSL-like Lipase/Acylhydrolase family ACP_0577 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACP_0577 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACP_0577 PF00205 Thiamine pyrophosphate enzyme, central domain ACP_0578 PF16363 GDP-mannose 4,6 dehydratase ACP_0579 PF16363 GDP-mannose 4,6 dehydratase ACP_0580 PF00483 Nucleotidyl transferase ACP_0581 PF00535 Glycosyl transferase family 2 ACP_0582 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACP_0588 PF01596 O-methyltransferase ACP_0589 PF08240 Alcohol dehydrogenase GroES-like domain ACP_0591 PF02092 Glycyl-tRNA synthetase beta subunit ACP_0591 PF05746 DALR anticodon binding domain ACP_0592 PF02091 Glycyl-tRNA synthetase alpha subunit ACP_0593 PF11967 Recombination protein O N terminal ACP_0593 PF02565 Recombination protein O C terminal ACP_0595 PF00120 Glutamine synthetase, catalytic domain ACP_0595 PF03951 Glutamine synthetase, beta-Grasp domain ACP_0601 PF00899 ThiF family ACP_0602 PF01103 Surface antigen ACP_0602 PF07244 Surface antigen variable number repeat ACP_0603 PF09312 SurA N-terminal domain ACP_0603 PF00639 PPIC-type PPIASE domain ACP_0608 PF00800 Prephenate dehydratase ACP_0608 PF01817 Chorismate mutase type II ACP_0608 PF01842 ACT domain ACP_0609 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACP_0609 PF05362 Lon protease (S16) C-terminal proteolytic domain ACP_0609 PF00004 ATPase family associated with various cellular activities (AAA) ACP_0611 PF04851 Type III restriction enzyme, res subunit ACP_0611 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACP_0611 PF18074 Primosomal protein N C-terminal domain ACP_0611 PF17764 3′ DNA-binding domain (3′BD) ACP_0611 PF00271 Helicase conserved C-terminal domain ACP_0612 PF03167 Uracil DNA glycosylase superfamily ACP_0613 PF02441 Flavoprotein ACP_0613 PF04127 DNA / pantothenate metabolism flavoprotein ACP_0615 PF01192 RNA polymerase Rpb6 ACP_0616 PF00625 Guanylate kinase ACP_0617 PF03755 YicC-like family, N-terminal region ACP_0617 PF08340 Domain of unknown function (DUF1732) ACP_0618 PF00005 ABC transporter ACP_0618 PF00664 ABC transporter transmembrane region ACP_0619 PF03668 P-loop ATPase protein family ACP_0621 PF00309 Sigma-54 factor, Activator interacting domain (AID) ACP_0621 PF04552 Sigma-54, DNA binding domain ACP_0621 PF04963 Sigma-54 factor, core binding domain ACP_0622 PF00005 ABC transporter ACP_0625 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ACP_0626 PF00528 Binding-protein-dependent transport system inner membrane component ACP_0627 PF00571 CBS domain ACP_0627 PF00005 ABC transporter ACP_0629 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACP_0629 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACP_0631 PF00162 Phosphoglycerate kinase ACP_0634 PF00121 Triosephosphate isomerase ACP_0638 PF03471 Transporter associated domain ACP_0638 PF00571 CBS domain ACP_0638 PF01595 Cyclin M transmembrane N-terminal domain ACP_0642 PF02469 Fasciclin domain ACP_0643 PF04542 Sigma-70 region 2 ACP_0643 PF04545 Sigma-70, region 4 ACP_0644 PF10099 Anti-sigma-K factor rskA ACP_0647 PF00570 HRDC domain ACP_0647 PF16124 RecQ zinc-binding ACP_0647 PF00271 Helicase conserved C-terminal domain ACP_0647 PF00270 DEAD/DEAH box helicase ACP_0647 PF09382 RQC domain ACP_0650 PF08401 Domain of unknown function (DUF1738) ACP_0650 PF18818 Metallopeptidase superfamily domain ACP_0650 PF13362 Toprim domain ACP_0652 PF00004 ATPase family associated with various cellular activities (AAA) ACP_0652 PF16193 AAA C-terminal domain ACP_0652 PF12002 MgsA AAA+ ATPase C terminal ACP_0654 PF13676 TIR domain ACP_0660 PF00563 EAL domain ACP_0660 PF13188 PAS domain ACP_0660 PF00990 Diguanylate cyclase, GGDEF domain ACP_0660 PF03707 Bacterial signalling protein N terminal repeat ACP_0663 PF18272 single-stranded DNA binding TraI N-terminal subdomain ACP_0663 PF08751 TrwC relaxase ACP_0663 PF18340 DNA relaxase TraI 2B/2B-like domain ACP_0663 PF07057 DNA helicase TraI ACP_0667 PF01965 DJ-1/PfpI family ACP_0669 PF01965 DJ-1/PfpI family ACP_0669 PF12833 Helix-turn-helix domain ACP_0671 PF02540 NAD synthase ACP_0671 PF00795 Carbon-nitrogen hydrolase ACP_0673 PF05275 Copper resistance protein B precursor (CopB) ACP_0674 PF07732 Multicopper oxidase ACP_0674 PF07731 Multicopper oxidase ACP_0674 PF00394 Multicopper oxidase ACP_0677 PF00158 Sigma-54 interaction domain ACP_0677 PF00072 Response regulator receiver domain ACP_0677 PF02954 Bacterial regulatory protein, Fis family ACP_0678 PF00512 His Kinase A (phospho-acceptor) domain ACP_0678 PF00989 PAS fold ACP_0678 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0680 PF01513 ATP-NAD kinase ACP_0681 PF01479 S4 domain ACP_0681 PF01728 FtsJ-like methyltransferase ACP_0683 PF00480 ROK family ACP_0684 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ACP_0685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACP_0685 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACP_0685 PF02142 MGS-like domain ACP_0686 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACP_0686 PF00117 Glutamine amidotransferase class-I ACP_0688 PF01416 tRNA pseudouridine synthase ACP_0696 PF02463 RecF/RecN/SMC N terminal domain ACP_0696 PF06470 SMC proteins Flexible Hinge Domain ACP_0697 PF01259 SAICAR synthetase ACP_0698 PF02674 Colicin V production protein ACP_0700 PF13419 Haloacid dehalogenase-like hydrolase ACP_0703 PF00990 Diguanylate cyclase, GGDEF domain ACP_0703 PF00989 PAS fold ACP_0703 PF01590 GAF domain ACP_0703 PF00563 EAL domain ACP_0704 PF00196 Bacterial regulatory proteins, luxR family ACP_0704 PF00072 Response regulator receiver domain ACP_0706 PF09335 SNARE associated Golgi protein ACP_0707 PF00730 HhH-GPD superfamily base excision DNA repair protein ACP_0707 PF00633 Helix-hairpin-helix motif ACP_0709 PF00128 Alpha amylase, catalytic domain ACP_0709 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACP_0710 PF02602 Uroporphyrinogen-III synthase HemD ACP_0711 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACP_0711 PF03900 Porphobilinogen deaminase, C-terminal domain ACP_0712 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACP_0712 PF01488 Shikimate / quinate 5-dehydrogenase ACP_0712 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACP_0713 PF05140 ResB-like family ACP_0713 PF01578 Cytochrome C assembly protein ACP_0716 PF00488 MutS domain V ACP_0716 PF05190 MutS family domain IV ACP_0716 PF05192 MutS domain III ACP_0716 PF05188 MutS domain II ACP_0716 PF01624 MutS domain I ACP_0717 PF00933 Glycosyl hydrolase family 3 N terminal domain ACP_0718 PF03702 Anhydro-N-acetylmuramic acid kinase ACP_0719 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACP_0720 PF00166 Chaperonin 10 Kd subunit ACP_0721 PF00118 TCP-1/cpn60 chaperonin family ACP_0729 PF00593 TonB dependent receptor ACP_0733 PF01268 Formate--tetrahydrofolate ligase ACP_0734 PF00873 AcrB/AcrD/AcrF family ACP_0739 PF03707 Bacterial signalling protein N terminal repeat ACP_0739 PF00990 Diguanylate cyclase, GGDEF domain ACP_0739 PF00563 EAL domain ACP_0742 PF02397 Bacterial sugar transferase ACP_0743 PF00155 Aminotransferase class I and II ACP_0744 PF00294 pfkB family carbohydrate kinase ACP_0744 PF01467 Cytidylyltransferase-like ACP_0745 PF13580 SIS domain ACP_0746 PF01370 NAD dependent epimerase/dehydratase family ACP_0749 PF01370 NAD dependent epimerase/dehydratase family ACP_0750 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACP_0750 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACP_0750 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACP_0751 PF13439 Glycosyltransferase Family 4 ACP_0751 PF00534 Glycosyl transferases group 1 ACP_0755 PF02706 Chain length determinant protein ACP_0755 PF13614 AAA domain ACP_0755 PF13807 G-rich domain on putative tyrosine kinase ACP_0756 PF00563 EAL domain ACP_0756 PF00990 Diguanylate cyclase, GGDEF domain ACP_0756 PF03707 Bacterial signalling protein N terminal repeat ACP_0759 PF04794 YdjC-like protein ACP_0760 PF07694 5TMR of 5TMR-LYT ACP_0760 PF06580 Histidine kinase ACP_0761 PF00534 Glycosyl transferases group 1 ACP_0761 PF13439 Glycosyltransferase Family 4 ACP_0762 PF00925 GTP cyclohydrolase II ACP_0763 PF02754 Cysteine-rich domain ACP_0763 PF13183 4Fe-4S dicluster domain ACP_0764 PF01012 Electron transfer flavoprotein domain ACP_0765 PF01012 Electron transfer flavoprotein domain ACP_0765 PF00766 Electron transfer flavoprotein FAD-binding domain ACP_0768 PF00582 Universal stress protein family ACP_0770 PF00440 Bacterial regulatory proteins, tetR family ACP_0776 PF09827 CRISPR associated protein Cas2 ACP_0777 PF01867 CRISPR associated protein Cas1 ACP_0781 PF09704 CRISPR-associated protein (Cas_Cas5) ACP_0786 PF00083 Sugar (and other) transporter ACP_0787 PF00356 Bacterial regulatory proteins, lacI family ACP_0788 PF00480 ROK family ACP_0790 PF00768 D-alanyl-D-alanine carboxypeptidase ACP_0790 PF07943 Penicillin-binding protein 5, C-terminal domain ACP_0794 PF03167 Uracil DNA glycosylase superfamily ACP_0797 PF00012 Hsp70 protein ACP_0799 PF01541 GIY-YIG catalytic domain ACP_0800 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACP_0800 PF06827 Zinc finger found in FPG and IleRS ACP_0800 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACP_0801 PF00684 DnaJ central domain ACP_0801 PF01556 DnaJ C terminal domain ACP_0801 PF00226 DnaJ domain ACP_0802 PF13302 Acetyltransferase (GNAT) domain ACP_0804 PF13411 MerR HTH family regulatory protein ACP_0809 PF00557 Metallopeptidase family M24 ACP_0809 PF01321 Creatinase/Prolidase N-terminal domain ACP_0812 PF01593 Flavin containing amine oxidoreductase ACP_0815 PF08240 Alcohol dehydrogenase GroES-like domain ACP_0815 PF00107 Zinc-binding dehydrogenase ACP_0816 PF08240 Alcohol dehydrogenase GroES-like domain ACP_0816 PF00107 Zinc-binding dehydrogenase ACP_0818 PF01370 NAD dependent epimerase/dehydratase family ACP_0820 PF00501 AMP-binding enzyme ACP_0823 PF00534 Glycosyl transferases group 1 ACP_0825 PF10531 SLBB domain ACP_0825 PF02563 Polysaccharide biosynthesis/export protein ACP_0825 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ACP_0826 PF13614 AAA domain ACP_0826 PF13807 G-rich domain on putative tyrosine kinase ACP_0826 PF02706 Chain length determinant protein ACP_0828 PF12804 MobA-like NTP transferase domain ACP_0828 PF00132 Bacterial transferase hexapeptide (six repeats) ACP_0829 PF16363 GDP-mannose 4,6 dehydratase ACP_0831 PF03808 Glycosyl transferase WecB/TagA/CpsF family ACP_0834 PF13580 SIS domain ACP_0835 PF00535 Glycosyl transferase family 2 ACP_0837 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ACP_0837 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACP_0838 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ACP_0838 PF01266 FAD dependent oxidoreductase ACP_0839 PF00230 Major intrinsic protein ACP_0842 PF00128 Alpha amylase, catalytic domain ACP_0842 PF16657 Maltogenic Amylase, C-terminal domain ACP_0843 PF00128 Alpha amylase, catalytic domain ACP_0843 PF11896 Domain of unknown function (DUF3416) ACP_0845 PF00535 Glycosyl transferase family 2 ACP_0847 PF01212 Beta-eliminating lyase ACP_0849 PF05368 NmrA-like family ACP_0852 PF13229 Right handed beta helix region ACP_0855 PF00324 Amino acid permease ACP_0857 PF00455 DeoR C terminal sensor domain ACP_0857 PF08220 DeoR-like helix-turn-helix domain ACP_0858 PF00294 pfkB family carbohydrate kinase ACP_0859 PF01380 SIS domain ACP_0860 PF08013 Tagatose 6 phosphate kinase ACP_0861 PF07687 Peptidase dimerisation domain ACP_0861 PF01546 Peptidase family M20/M25/M40 ACP_0863 PF09371 Tex-like protein N-terminal domain ACP_0863 PF00575 S1 RNA binding domain ACP_0863 PF17674 HHH domain ACP_0863 PF16921 Tex protein YqgF-like domain ACP_0864 PF02449 Beta-galactosidase ACP_0864 PF08533 Beta-galactosidase C-terminal domain ACP_0864 PF08532 Beta-galactosidase trimerisation domain ACP_0867 PF00593 TonB dependent receptor ACP_0872 PF00005 ABC transporter ACP_0872 PF02687 FtsX-like permease family ACP_0872 PF12704 MacB-like periplasmic core domain ACP_0873 PF03551 Transcriptional regulator PadR-like family ACP_0874 PF00849 RNA pseudouridylate synthase ACP_0875 PF01055 Glycosyl hydrolases family 31 ACP_0875 PF17137 Domain of unknown function (DUF5110) ACP_0875 PF16338 Domain of unknown function (DUF4968) ACP_0877 PF00593 TonB dependent receptor ACP_0877 PF00593 TonB dependent receptor ACP_0883 PF00005 ABC transporter ACP_0883 PF02687 FtsX-like permease family ACP_0883 PF12704 MacB-like periplasmic core domain ACP_0884 PF00005 ABC transporter ACP_0889 PF00512 His Kinase A (phospho-acceptor) domain ACP_0889 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0889 PF00989 PAS fold ACP_0890 PF00072 Response regulator receiver domain ACP_0891 PF08446 PAS fold ACP_0891 PF00360 Phytochrome region ACP_0891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0891 PF01590 GAF domain ACP_0891 PF00512 His Kinase A (phospho-acceptor) domain ACP_0893 PF00563 EAL domain ACP_0893 PF03707 Bacterial signalling protein N terminal repeat ACP_0893 PF00990 Diguanylate cyclase, GGDEF domain ACP_0894 PF02687 FtsX-like permease family ACP_0894 PF00005 ABC transporter ACP_0894 PF12704 MacB-like periplasmic core domain ACP_0895 PF12704 MacB-like periplasmic core domain ACP_0895 PF02687 FtsX-like permease family ACP_0895 PF00005 ABC transporter ACP_0896 PF13472 GDSL-like Lipase/Acylhydrolase family ACP_0897 PF16198 tRNA pseudouridylate synthase B C-terminal domain ACP_0897 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACP_0898 PF01227 GTP cyclohydrolase I ACP_0900 PF00535 Glycosyl transferase family 2 ACP_0901 PF08534 Redoxin ACP_0903 PF08543 Phosphomethylpyrimidine kinase ACP_0904 PF05036 Sporulation related domain ACP_0904 PF03330 Lytic transglycolase ACP_0905 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACP_0906 PF00005 ABC transporter ACP_0906 PF12704 MacB-like periplasmic core domain ACP_0906 PF02687 FtsX-like permease family ACP_0907 PF12704 MacB-like periplasmic core domain ACP_0907 PF02687 FtsX-like permease family ACP_0907 PF00005 ABC transporter ACP_0908 PF01229 Glycosyl hydrolases family 39 ACP_0909 PF08533 Beta-galactosidase C-terminal domain ACP_0909 PF02449 Beta-galactosidase ACP_0909 PF08532 Beta-galactosidase trimerisation domain ACP_0913 PF04055 Radical SAM superfamily ACP_0918 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACP_0919 PF00909 Ammonium Transporter Family ACP_0920 PF00543 Nitrogen regulatory protein P-II ACP_0921 PF01909 Nucleotidyltransferase domain ACP_0921 PF01966 HD domain ACP_0921 PF01842 ACT domain ACP_0921 PF08335 GlnD PII-uridylyltransferase ACP_0922 PF00990 Diguanylate cyclase, GGDEF domain ACP_0922 PF03707 Bacterial signalling protein N terminal repeat ACP_0922 PF00563 EAL domain ACP_0926 PF01741 Large-conductance mechanosensitive channel, MscL ACP_0927 PF01144 Coenzyme A transferase ACP_0929 PF01144 Coenzyme A transferase ACP_0931 PF13361 UvrD-like helicase C-terminal domain ACP_0931 PF12705 PD-(D/E)XK nuclease superfamily ACP_0931 PF00580 UvrD/REP helicase N-terminal domain ACP_0932 PF01895 PhoU domain ACP_0933 PF00005 ABC transporter ACP_0934 PF16736 Single Cache-like ACP_0934 PF00989 PAS fold ACP_0934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0934 PF00512 His Kinase A (phospho-acceptor) domain ACP_0935 PF00072 Response regulator receiver domain ACP_0935 PF00486 Transcriptional regulatory protein, C terminal ACP_0936 PF00486 Transcriptional regulatory protein, C terminal ACP_0936 PF00072 Response regulator receiver domain ACP_0937 PF00989 PAS fold ACP_0937 PF08447 PAS fold ACP_0937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0937 PF00512 His Kinase A (phospho-acceptor) domain ACP_0938 PF01894 Uncharacterised protein family UPF0047 ACP_0939 PF12706 Beta-lactamase superfamily domain ACP_0942 PF00106 short chain dehydrogenase ACP_0944 PF02391 MoaE protein ACP_0947 PF00459 Inositol monophosphatase family ACP_0948 PF00037 4Fe-4S binding domain ACP_0949 PF04542 Sigma-70 region 2 ACP_0949 PF08281 Sigma-70, region 4 ACP_0950 PF01202 Shikimate kinase ACP_0953 PF01040 UbiA prenyltransferase family ACP_0954 PF00005 ABC transporter ACP_0954 PF13732 Domain of unknown function (DUF4162) ACP_0955 PF01061 ABC-2 type transporter ACP_0956 PF04238 Protein of unknown function (DUF420) ACP_0958 PF00436 Single-strand binding protein family ACP_0960 PF01584 CheW-like domain ACP_0961 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACP_0961 PF02203 Tar ligand binding domain homologue ACP_0961 PF00672 HAMP domain ACP_0962 PF02895 Signal transducing histidine kinase, homodimeric domain ACP_0962 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_0962 PF01584 CheW-like domain ACP_0962 PF01627 Hpt domain ACP_0962 PF09078 CheY binding ACP_0963 PF03705 CheR methyltransferase, all-alpha domain ACP_0963 PF01739 CheR methyltransferase, SAM binding domain ACP_0964 PF03975 CheD chemotactic sensory transduction ACP_0968 PF00072 Response regulator receiver domain ACP_0968 PF01339 CheB methylesterase ACP_0969 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACP_0969 PF02154 Flagellar motor switch protein FliM ACP_0970 PF00072 Response regulator receiver domain ACP_0974 PF01494 FAD binding domain ACP_0975 PF13380 CoA binding domain ACP_0976 PF02683 Cytochrome C biogenesis protein transmembrane region ACP_0976 PF11412 Disulphide bond corrector protein DsbC ACP_0977 PF12002 MgsA AAA+ ATPase C terminal ACP_0977 PF16193 AAA C-terminal domain ACP_0977 PF00004 ATPase family associated with various cellular activities (AAA) ACP_0979 PF00588 SpoU rRNA Methylase family ACP_0979 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACP_0981 PF01300 Telomere recombination ACP_0983 PF01940 Integral membrane protein DUF92 ACP_0986 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ACP_0986 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ACP_0988 PF00150 Cellulase (glycosyl hydrolase family 5) ACP_0990 PF00180 Isocitrate/isopropylmalate dehydrogenase ACP_0990 PF18324 Hypothetical protein TT1725 ACP_0996 PF05067 Manganese containing catalase ACP_1001 PF01368 DHH family ACP_1001 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ACP_1001 PF02272 DHHA1 domain ACP_1001 PF17768 RecJ OB domain ACP_1002 PF02585 GlcNAc-PI de-N-acetylase ACP_1004 PF02219 Methylenetetrahydrofolate reductase ACP_1004 PF02574 Homocysteine S-methyltransferase ACP_1005 PF02609 Exonuclease VII small subunit ACP_1006 PF01053 Cys/Met metabolism PLP-dependent enzyme ACP_1007 PF00291 Pyridoxal-phosphate dependent enzyme ACP_1009 PF01520 N-acetylmuramoyl-L-alanine amidase ACP_1012 PF01177 Asp/Glu/Hydantoin racemase ACP_1015 PF03928 Haem-degrading ACP_1016 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACP_1016 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACP_1017 PF01066 CDP-alcohol phosphatidyltransferase ACP_1018 PF02666 Phosphatidylserine decarboxylase ACP_1020 PF00583 Acetyltransferase (GNAT) family ACP_1021 PF00814 Glycoprotease family ACP_1025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACP_1025 PF02770 Acyl-CoA dehydrogenase, middle domain ACP_1025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACP_1027 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ACP_1027 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACP_1028 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACP_1028 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACP_1029 PF00231 ATP synthase ACP_1030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACP_1030 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACP_1030 PF00306 ATP synthase alpha/beta chain, C terminal domain ACP_1031 PF00213 ATP synthase delta (OSCP) subunit ACP_1034 PF01926 50S ribosome-binding GTPase ACP_1034 PF13167 GTP-binding GTPase N-terminal ACP_1034 PF16360 GTP-binding GTPase Middle Region ACP_1035 PF17209 Hfq protein ACP_1037 PF00342 Phosphoglucose isomerase ACP_1038 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACP_1038 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACP_1038 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACP_1038 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACP_1039 PF01050 Mannose-6-phosphate isomerase ACP_1039 PF00483 Nucleotidyl transferase ACP_1040 PF01238 Phosphomannose isomerase type I ACP_1043 PF06463 Molybdenum Cofactor Synthesis C ACP_1043 PF04055 Radical SAM superfamily ACP_1044 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ACP_1045 PF13537 Glutamine amidotransferase domain ACP_1045 PF00733 Asparagine synthase ACP_1047 PF00378 Enoyl-CoA hydratase/isomerase ACP_1047 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACP_1047 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACP_1049 PF14602 Hexapeptide repeat of succinyl-transferase ACP_1049 PF12804 MobA-like NTP transferase domain ACP_1049 PF00132 Bacterial transferase hexapeptide (six repeats) ACP_1050 PF04542 Sigma-70 region 2 ACP_1050 PF08281 Sigma-70, region 4 ACP_1051 PF00072 Response regulator receiver domain ACP_1051 PF01966 HD domain ACP_1052 PF01329 Pterin 4 alpha carbinolamine dehydratase ACP_1056 PF03631 Virulence factor BrkB ACP_1057 PF03741 Integral membrane protein TerC family ACP_1059 PF00149 Calcineurin-like phosphoesterase ACP_1060 PF09312 SurA N-terminal domain ACP_1060 PF00639 PPIC-type PPIASE domain ACP_1061 PF02446 4-alpha-glucanotransferase ACP_1064 PF04072 Leucine carboxyl methyltransferase ACP_1065 PF02033 Ribosome-binding factor A ACP_1067 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ACP_1068 PF00583 Acetyltransferase (GNAT) family ACP_1071 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACP_1071 PF14310 Fibronectin type III-like domain ACP_1071 PF00933 Glycosyl hydrolase family 3 N terminal domain ACP_1072 PF00072 Response regulator receiver domain ACP_1072 PF00196 Bacterial regulatory proteins, luxR family ACP_1073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1073 PF07730 Histidine kinase ACP_1075 PF00005 ABC transporter ACP_1077 PF03551 Transcriptional regulator PadR-like family ACP_1080 PF00091 Tubulin/FtsZ family, GTPase domain ACP_1080 PF12327 FtsZ family, C-terminal domain ACP_1081 PF02491 SHS2 domain inserted in FTSA ACP_1082 PF03799 Cell division protein FtsQ ACP_1082 PF08478 POTRA domain, FtsQ-type ACP_1083 PF08245 Mur ligase middle domain ACP_1083 PF02875 Mur ligase family, glutamate ligase domain ACP_1083 PF01225 Mur ligase family, catalytic domain ACP_1086 PF03033 Glycosyltransferase family 28 N-terminal domain ACP_1086 PF04101 Glycosyltransferase family 28 C-terminal domain ACP_1087 PF01098 Cell cycle protein ACP_1088 PF02875 Mur ligase family, glutamate ligase domain ACP_1088 PF08245 Mur ligase middle domain ACP_1089 PF00953 Glycosyl transferase family 4 ACP_1089 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACP_1090 PF02875 Mur ligase family, glutamate ligase domain ACP_1090 PF08245 Mur ligase middle domain ACP_1090 PF01225 Mur ligase family, catalytic domain ACP_1091 PF02875 Mur ligase family, glutamate ligase domain ACP_1091 PF08245 Mur ligase middle domain ACP_1091 PF01225 Mur ligase family, catalytic domain ACP_1092 PF03717 Penicillin-binding Protein dimerisation domain ACP_1092 PF00905 Penicillin binding protein transpeptidase domain ACP_1094 PF01795 MraW methylase family ACP_1095 PF02381 MraZ protein, putative antitoxin-like ACP_1099 PF01966 HD domain ACP_1099 PF13286 Phosphohydrolase-associated domain ACP_1106 PF00263 Bacterial type II and III secretion system protein ACP_1106 PF13629 Pilus formation protein N terminal region ACP_1106 PF04972 BON domain ACP_1108 PF00437 Type II/IV secretion system protein ACP_1114 PF00117 Glutamine amidotransferase class-I ACP_1114 PF00958 GMP synthase C terminal domain ACP_1117 PF00133 tRNA synthetases class I (I, L, M and V) ACP_1117 PF08264 Anticodon-binding domain of tRNA ACP_1117 PF13603 Leucyl-tRNA synthetase, Domain 2 ACP_1118 PF01261 Xylose isomerase-like TIM barrel ACP_1119 PF01979 Amidohydrolase family ACP_1123 PF01263 Aldose 1-epimerase ACP_1124 PF00294 pfkB family carbohydrate kinase ACP_1125 PF01081 KDPG and KHG aldolase ACP_1126 PF13378 Enolase C-terminal domain-like ACP_1126 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ACP_1127 PF00480 ROK family ACP_1129 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_1130 PF00873 AcrB/AcrD/AcrF family ACP_1141 PF00756 Putative esterase ACP_1143 PF06964 Alpha-L-arabinofuranosidase C-terminal domain ACP_1146 PF00534 Glycosyl transferases group 1 ACP_1146 PF13439 Glycosyltransferase Family 4 ACP_1148 PF00975 Thioesterase domain ACP_1153 PF00291 Pyridoxal-phosphate dependent enzyme ACP_1155 PF00550 Phosphopantetheine attachment site ACP_1155 PF14765 Polyketide synthase dehydratase ACP_1155 PF16197 Ketoacyl-synthetase C-terminal extension ACP_1155 PF08659 KR domain ACP_1155 PF00698 Acyl transferase domain ACP_1155 PF00109 Beta-ketoacyl synthase, N-terminal domain ACP_1155 PF02801 Beta-ketoacyl synthase, C-terminal domain ACP_1157 PF00202 Aminotransferase class-III ACP_1157 PF02801 Beta-ketoacyl synthase, C-terminal domain ACP_1157 PF00109 Beta-ketoacyl synthase, N-terminal domain ACP_1157 PF16197 Ketoacyl-synthetase C-terminal extension ACP_1157 PF13193 AMP-binding enzyme C-terminal domain ACP_1157 PF00501 AMP-binding enzyme ACP_1157 PF00668 Condensation domain ACP_1157 PF00550 Phosphopantetheine attachment site ACP_1158 PF12706 Beta-lactamase superfamily domain ACP_1158 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain ACP_1161 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain ACP_1161 PF12706 Beta-lactamase superfamily domain ACP_1162 PF00501 AMP-binding enzyme ACP_1162 PF00550 Phosphopantetheine attachment site ACP_1162 PF00668 Condensation domain ACP_1162 PF00501 AMP-binding enzyme ACP_1162 PF13193 AMP-binding enzyme C-terminal domain ACP_1162 PF00550 Phosphopantetheine attachment site ACP_1162 PF00668 Condensation domain ACP_1162 PF13193 AMP-binding enzyme C-terminal domain ACP_1165 PF01648 4'-phosphopantetheinyl transferase superfamily ACP_1170 PF00005 ABC transporter ACP_1170 PF00664 ABC transporter transmembrane region ACP_1190 PF00436 Single-strand binding protein family ACP_1191 PF00437 Type II/IV secretion system protein ACP_1195 PF18340 DNA relaxase TraI 2B/2B-like domain ACP_1195 PF08751 TrwC relaxase ACP_1195 PF07057 DNA helicase TraI ACP_1195 PF18272 single-stranded DNA binding TraI N-terminal subdomain ACP_1196 PF05598 Transposase domain (DUF772) ACP_1199 PF00403 Heavy-metal-associated domain ACP_1200 PF03773 Predicted permease ACP_1202 PF00873 AcrB/AcrD/AcrF family ACP_1203 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_1203 PF00529 HlyD membrane-fusion protein of T1SS ACP_1206 PF01022 Bacterial regulatory protein, arsR family ACP_1209 PF02683 Cytochrome C biogenesis protein transmembrane region ACP_1209 PF11412 Disulphide bond corrector protein DsbC ACP_1211 PF04945 YHS domain ACP_1214 PF05275 Copper resistance protein B precursor (CopB) ACP_1215 PF07732 Multicopper oxidase ACP_1215 PF00394 Multicopper oxidase ACP_1215 PF07731 Multicopper oxidase ACP_1224 PF17762 HTH domain found in ParB protein ACP_1224 PF02195 ParB-like nuclease domain ACP_1225 PF13411 MerR HTH family regulatory protein ACP_1227 PF13192 Thioredoxin domain ACP_1229 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_1229 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACP_1230 PF00403 Heavy-metal-associated domain ACP_1238 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACP_1238 PF03807 NADP oxidoreductase coenzyme F420-dependent ACP_1239 PF02628 Cytochrome oxidase assembly protein ACP_1239 PF01040 UbiA prenyltransferase family ACP_1241 PF08533 Beta-galactosidase C-terminal domain ACP_1241 PF02449 Beta-galactosidase ACP_1241 PF08532 Beta-galactosidase trimerisation domain ACP_1242 PF00691 OmpA family ACP_1242 PF05736 OprF membrane domain ACP_1243 PF08459 UvrC Helix-hairpin-helix N-terminal ACP_1243 PF02151 UvrB/uvrC motif ACP_1243 PF01541 GIY-YIG catalytic domain ACP_1245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ACP_1249 PF00486 Transcriptional regulatory protein, C terminal ACP_1249 PF00072 Response regulator receiver domain ACP_1250 PF00120 Glutamine synthetase, catalytic domain ACP_1250 PF03951 Glutamine synthetase, beta-Grasp domain ACP_1251 PF03793 PASTA domain ACP_1251 PF00069 Protein kinase domain ACP_1253 PF00999 Sodium/hydrogen exchanger family ACP_1255 PF00909 Ammonium Transporter Family ACP_1259 PF00072 Response regulator receiver domain ACP_1259 PF00486 Transcriptional regulatory protein, C terminal ACP_1260 PF00512 His Kinase A (phospho-acceptor) domain ACP_1260 PF00672 HAMP domain ACP_1260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1262 PF00356 Bacterial regulatory proteins, lacI family ACP_1263 PF00703 Glycosyl hydrolases family 2 ACP_1263 PF02837 Glycosyl hydrolases family 2, sugar binding domain ACP_1263 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain ACP_1264 PF00324 Amino acid permease ACP_1265 PF00135 Carboxylesterase family ACP_1266 PF00535 Glycosyl transferase family 2 ACP_1267 PF00593 TonB dependent receptor ACP_1272 PF00793 DAHP synthetase I family ACP_1276 PF18331 PKHD-type hydroxylase C-terminal domain ACP_1276 PF13640 2OG-Fe(II) oxygenase superfamily ACP_1277 PF07715 TonB-dependent Receptor Plug Domain ACP_1277 PF00593 TonB dependent receptor ACP_1278 PF00135 Carboxylesterase family ACP_1283 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACP_1287 PF00593 TonB dependent receptor ACP_1291 PF07730 Histidine kinase ACP_1291 PF05384 Sensor protein DegS ACP_1291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1292 PF00072 Response regulator receiver domain ACP_1292 PF00196 Bacterial regulatory proteins, luxR family ACP_1294 PF00155 Aminotransferase class I and II ACP_1294 PF00392 Bacterial regulatory proteins, gntR family ACP_1302 PF00072 Response regulator receiver domain ACP_1302 PF00486 Transcriptional regulatory protein, C terminal ACP_1304 PF01548 Transposase ACP_1304 PF02371 Transposase IS116/IS110/IS902 family ACP_1308 PF13533 Biotin-lipoyl like ACP_1313 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_1313 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACP_1313 PF00403 Heavy-metal-associated domain ACP_1320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACP_1320 PF00205 Thiamine pyrophosphate enzyme, central domain ACP_1320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACP_1321 PF08240 Alcohol dehydrogenase GroES-like domain ACP_1321 PF00107 Zinc-binding dehydrogenase ACP_1322 PF00171 Aldehyde dehydrogenase family ACP_1323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1323 PF13492 GAF domain ACP_1323 PF13185 GAF domain ACP_1323 PF07730 Histidine kinase ACP_1324 PF00196 Bacterial regulatory proteins, luxR family ACP_1324 PF00072 Response regulator receiver domain ACP_1327 PF07730 Histidine kinase ACP_1327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1327 PF13492 GAF domain ACP_1327 PF13185 GAF domain ACP_1328 PF13276 HTH-like domain ACP_1328 PF13683 Integrase core domain ACP_1329 PF01527 Transposase ACP_1332 PF04542 Sigma-70 region 2 ACP_1332 PF08281 Sigma-70, region 4 ACP_1336 PF01619 Proline dehydrogenase ACP_1337 PF08448 PAS fold ACP_1337 PF00990 Diguanylate cyclase, GGDEF domain ACP_1338 PF00781 Diacylglycerol kinase catalytic domain ACP_1339 PF00881 Nitroreductase family ACP_1341 PF00529 HlyD membrane-fusion protein of T1SS ACP_1341 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_1342 PF00873 AcrB/AcrD/AcrF family ACP_1343 PF02321 Outer membrane efflux protein ACP_1345 PF00083 Sugar (and other) transporter ACP_1346 PF01301 Glycosyl hydrolases family 35 ACP_1348 PF00455 DeoR C terminal sensor domain ACP_1348 PF08220 DeoR-like helix-turn-helix domain ACP_1349 PF03932 CutC family ACP_1350 PF00593 TonB dependent receptor ACP_1352 PF03551 Transcriptional regulator PadR-like family ACP_1359 PF06463 Molybdenum Cofactor Synthesis C ACP_1359 PF04055 Radical SAM superfamily ACP_1360 PF13439 Glycosyltransferase Family 4 ACP_1360 PF00534 Glycosyl transferases group 1 ACP_1363 PF12728 Helix-turn-helix domain ACP_1370 PF00005 ABC transporter ACP_1372 PF02769 AIR synthase related protein, C-terminal domain ACP_1372 PF00586 AIR synthase related protein, N-terminal domain ACP_1375 PF00551 Formyl transferase ACP_1379 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ACP_1379 PF04055 Radical SAM superfamily ACP_1380 PF01467 Cytidylyltransferase-like ACP_1386 PF13580 SIS domain ACP_1387 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_1389 PF00772 DnaB-like helicase N terminal domain ACP_1389 PF03796 DnaB-like helicase C terminal domain ACP_1390 PF13537 Glutamine amidotransferase domain ACP_1390 PF00156 Phosphoribosyl transferase domain ACP_1391 PF02769 AIR synthase related protein, C-terminal domain ACP_1391 PF00586 AIR synthase related protein, N-terminal domain ACP_1391 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACP_1392 PF02574 Homocysteine S-methyltransferase ACP_1397 PF12704 MacB-like periplasmic core domain ACP_1397 PF02687 FtsX-like permease family ACP_1397 PF00005 ABC transporter ACP_1399 PF17678 Glycosyl hydrolase family 92 N-terminal domain ACP_1399 PF07971 Glycosyl hydrolase family 92 ACP_1401 PF13291 ACT domain ACP_1401 PF00291 Pyridoxal-phosphate dependent enzyme ACP_1403 PF00857 Isochorismatase family ACP_1404 PF07690 Major Facilitator Superfamily ACP_1407 PF00873 AcrB/AcrD/AcrF family ACP_1412 PF01209 ubiE/COQ5 methyltransferase family ACP_1414 PF00873 AcrB/AcrD/AcrF family ACP_1415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_1417 PF12680 SnoaL-like domain ACP_1417 PF08281 Sigma-70, region 4 ACP_1417 PF04542 Sigma-70 region 2 ACP_1418 PF00135 Carboxylesterase family ACP_1420 PF00561 alpha/beta hydrolase fold ACP_1421 PF00440 Bacterial regulatory proteins, tetR family ACP_1422 PF01196 Ribosomal protein L17 ACP_1423 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACP_1423 PF01000 RNA polymerase Rpb3/RpoA insert domain ACP_1423 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACP_1424 PF00163 Ribosomal protein S4/S9 N-terminal domain ACP_1424 PF01479 S4 domain ACP_1425 PF00411 Ribosomal protein S11 ACP_1426 PF00416 Ribosomal protein S13/S18 ACP_1427 PF00444 Ribosomal protein L36 ACP_1428 PF01176 Translation initiation factor 1A / IF-1 ACP_1429 PF00557 Metallopeptidase family M24 ACP_1430 PF05191 Adenylate kinase, active site lid ACP_1431 PF00344 SecY translocase ACP_1432 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACP_1433 PF00327 Ribosomal protein L30p/L7e ACP_1434 PF00333 Ribosomal protein S5, N-terminal domain ACP_1434 PF03719 Ribosomal protein S5, C-terminal domain ACP_1435 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACP_1436 PF00347 Ribosomal protein L6 ACP_1437 PF00410 Ribosomal protein S8 ACP_1438 PF00253 Ribosomal protein S14p/S29e ACP_1439 PF00281 Ribosomal protein L5 ACP_1439 PF00673 ribosomal L5P family C-terminus ACP_1440 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACP_1440 PF00467 KOW motif ACP_1441 PF00238 Ribosomal protein L14p/L23e ACP_1442 PF00366 Ribosomal protein S17 ACP_1443 PF00831 Ribosomal L29 protein ACP_1444 PF00252 Ribosomal protein L16p/L10e ACP_1445 PF00189 Ribosomal protein S3, C-terminal domain ACP_1445 PF07650 KH domain ACP_1446 PF00237 Ribosomal protein L22p/L17e ACP_1447 PF00203 Ribosomal protein S19 ACP_1448 PF00181 Ribosomal Proteins L2, RNA binding domain ACP_1448 PF03947 Ribosomal Proteins L2, C-terminal domain ACP_1449 PF00276 Ribosomal protein L23 ACP_1450 PF00573 Ribosomal protein L4/L1 family ACP_1451 PF00297 Ribosomal protein L3 ACP_1452 PF00338 Ribosomal protein S10p/S20e ACP_1453 PF00009 Elongation factor Tu GTP binding domain ACP_1453 PF03144 Elongation factor Tu domain 2 ACP_1453 PF03143 Elongation factor Tu C-terminal domain ACP_1454 PF00009 Elongation factor Tu GTP binding domain ACP_1454 PF03764 Elongation factor G, domain IV ACP_1454 PF03144 Elongation factor Tu domain 2 ACP_1454 PF14492 Elongation Factor G, domain II ACP_1454 PF00679 Elongation factor G C-terminus ACP_1455 PF00177 Ribosomal protein S7p/S5e ACP_1456 PF00164 Ribosomal protein S12/S23 ACP_1458 PF00326 Prolyl oligopeptidase family ACP_1458 PF07676 WD40-like Beta Propeller Repeat ACP_1461 PF03477 ATP cone domain ACP_1462 PF00180 Isocitrate/isopropylmalate dehydrogenase ACP_1462 PF18324 Hypothetical protein TT1725 ACP_1463 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACP_1463 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACP_1464 PF00696 Amino acid kinase family ACP_1464 PF01842 ACT domain ACP_1466 PF05173 Dihydrodipicolinate reductase, C-terminus ACP_1466 PF01113 Dihydrodipicolinate reductase, N-terminus ACP_1467 PF00701 Dihydrodipicolinate synthetase family ACP_1468 PF14602 Hexapeptide repeat of succinyl-transferase ACP_1468 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ACP_1468 PF00132 Bacterial transferase hexapeptide (six repeats) ACP_1469 PF17770 Ribonuclease J C-terminal domain ACP_1469 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACP_1469 PF00753 Metallo-beta-lactamase superfamily ACP_1470 PF00291 Pyridoxal-phosphate dependent enzyme ACP_1472 PF17854 FtsK alpha domain ACP_1472 PF01580 FtsK/SpoIIIE family ACP_1472 PF09397 Ftsk gamma domain ACP_1474 PF00512 His Kinase A (phospho-acceptor) domain ACP_1474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1474 PF00072 Response regulator receiver domain ACP_1474 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACP_1475 PF00072 Response regulator receiver domain ACP_1475 PF00196 Bacterial regulatory proteins, luxR family ACP_1476 PF00691 OmpA family ACP_1476 PF05736 OprF membrane domain ACP_1478 PF00106 short chain dehydrogenase ACP_1479 PF00550 Phosphopantetheine attachment site ACP_1479 PF02801 Beta-ketoacyl synthase, C-terminal domain ACP_1479 PF00109 Beta-ketoacyl synthase, N-terminal domain ACP_1479 PF16197 Ketoacyl-synthetase C-terminal extension ACP_1479 PF00107 Zinc-binding dehydrogenase ACP_1479 PF08240 Alcohol dehydrogenase GroES-like domain ACP_1479 PF00698 Acyl transferase domain ACP_1479 PF14765 Polyketide synthase dehydratase ACP_1479 PF08659 KR domain ACP_1482 PF00005 ABC transporter ACP_1483 PF01061 ABC-2 type transporter ACP_1485 PF00512 His Kinase A (phospho-acceptor) domain ACP_1485 PF13188 PAS domain ACP_1485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1485 PF13426 PAS domain ACP_1485 PF00989 PAS fold ACP_1487 PF00206 Lyase ACP_1487 PF10415 Fumarase C C-terminus ACP_1489 PF00593 TonB dependent receptor ACP_1490 PF01370 NAD dependent epimerase/dehydratase family ACP_1491 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACP_1491 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACP_1491 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACP_1492 PF01648 4'-phosphopantetheinyl transferase superfamily ACP_1493 PF00593 TonB dependent receptor ACP_1497 PF01380 SIS domain ACP_1498 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ACP_1499 PF00719 Inorganic pyrophosphatase ACP_1500 PF13520 Amino acid permease ACP_1502 PF00873 AcrB/AcrD/AcrF family ACP_1503 PF00529 HlyD membrane-fusion protein of T1SS ACP_1503 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_1509 PF00690 Cation transporter/ATPase, N-terminus ACP_1509 PF00689 Cation transporting ATPase, C-terminus ACP_1510 PF01594 AI-2E family transporter ACP_1514 PF02592 Putative vitamin uptake transporter ACP_1516 PF02586 SOS response associated peptidase (SRAP) ACP_1517 PF00154 recA bacterial DNA recombination protein ACP_1519 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACP_1519 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACP_1519 PF14579 Helix-hairpin-helix motif ACP_1519 PF02811 PHP domain ACP_1522 PF00005 ABC transporter ACP_1522 PF12704 MacB-like periplasmic core domain ACP_1522 PF02687 FtsX-like permease family ACP_1525 PF03551 Transcriptional regulator PadR-like family ACP_1526 PF12704 MacB-like periplasmic core domain ACP_1526 PF02687 FtsX-like permease family ACP_1526 PF00005 ABC transporter ACP_1527 PF00005 ABC transporter ACP_1527 PF02687 FtsX-like permease family ACP_1527 PF12704 MacB-like periplasmic core domain ACP_1528 PF12704 MacB-like periplasmic core domain ACP_1528 PF02687 FtsX-like permease family ACP_1528 PF00005 ABC transporter ACP_1533 PF13086 AAA domain ACP_1533 PF13195 Protein of unknown function (DUF4011) ACP_1533 PF13086 AAA domain ACP_1533 PF13087 AAA domain ACP_1533 PF13087 AAA domain ACP_1533 PF13195 Protein of unknown function (DUF4011) ACP_1536 PF02384 N-6 DNA Methylase ACP_1538 PF11867 Domain of unknown function (DUF3387) ACP_1538 PF18766 SWI2/SNF2 ATPase ACP_1538 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACP_1548 PF01527 Transposase ACP_1552 PF00005 ABC transporter ACP_1562 PF00873 AcrB/AcrD/AcrF family ACP_1566 PF00072 Response regulator receiver domain ACP_1566 PF00196 Bacterial regulatory proteins, luxR family ACP_1567 PF12704 MacB-like periplasmic core domain ACP_1567 PF02687 FtsX-like permease family ACP_1567 PF00005 ABC transporter ACP_1570 PF13276 HTH-like domain ACP_1570 PF13683 Integrase core domain ACP_1571 PF01527 Transposase ACP_1576 PF00582 Universal stress protein family ACP_1578 PF01229 Glycosyl hydrolases family 39 ACP_1579 PF00328 Histidine phosphatase superfamily (branch 2) ACP_1586 PF08471 Class II vitamin B12-dependent ribonucleotide reductase ACP_1586 PF02867 Ribonucleotide reductase, barrel domain ACP_1589 PF01638 HxlR-like helix-turn-helix ACP_1591 PF00106 short chain dehydrogenase ACP_1601 PF00005 ABC transporter ACP_1605 PF04191 Phospholipid methyltransferase ACP_1606 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACP_1607 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACP_1608 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACP_1611 PF17820 PDZ domain ACP_1611 PF02163 Peptidase family M50 ACP_1612 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACP_1612 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACP_1612 PF13288 DXP reductoisomerase C-terminal domain ACP_1615 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACP_1616 PF02542 YgbB family ACP_1617 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACP_1620 PF10079 Bacillithiol biosynthesis BshC ACP_1622 PF00293 NUDIX domain ACP_1623 PF00313 'Cold-shock' DNA-binding domain ACP_1624 PF14716 Helix-hairpin-helix domain ACP_1624 PF02811 PHP domain ACP_1624 PF14791 DNA polymerase beta thumb ACP_1626 PF01613 Flavin reductase like domain ACP_1627 PF01255 Putative undecaprenyl diphosphate synthase ACP_1628 PF00216 Bacterial DNA-binding protein ACP_1629 PF00535 Glycosyl transferase family 2 ACP_1632 PF00005 ABC transporter ACP_1634 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ACP_1634 PF00326 Prolyl oligopeptidase family ACP_1638 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1638 PF00989 PAS fold ACP_1638 PF00512 His Kinase A (phospho-acceptor) domain ACP_1639 PF17137 Domain of unknown function (DUF5110) ACP_1639 PF16338 Domain of unknown function (DUF4968) ACP_1639 PF01055 Glycosyl hydrolases family 31 ACP_1642 PF04055 Radical SAM superfamily ACP_1646 PF00535 Glycosyl transferase family 2 ACP_1648 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACP_1648 PF01926 50S ribosome-binding GTPase ACP_1651 PF04851 Type III restriction enzyme, res subunit ACP_1651 PF13307 Helicase C-terminal domain ACP_1652 PF07969 Amidohydrolase family ACP_1656 PF00348 Polyprenyl synthetase ACP_1657 PF01804 Penicillin amidase ACP_1658 PF13419 Haloacid dehalogenase-like hydrolase ACP_1661 PF00378 Enoyl-CoA hydratase/isomerase ACP_1662 PF00682 HMGL-like ACP_1664 PF01039 Carboxyl transferase domain ACP_1665 PF00561 alpha/beta hydrolase fold ACP_1667 PF01022 Bacterial regulatory protein, arsR family ACP_1673 PF10150 Ribonuclease E/G family ACP_1673 PF10150 Ribonuclease E/G family ACP_1673 PF00575 S1 RNA binding domain ACP_1673 PF00575 S1 RNA binding domain ACP_1674 PF01098 Cell cycle protein ACP_1676 PF01380 SIS domain ACP_1676 PF00571 CBS domain ACP_1678 PF00578 AhpC/TSA family ACP_1684 PF00905 Penicillin binding protein transpeptidase domain ACP_1684 PF03717 Penicillin-binding Protein dimerisation domain ACP_1688 PF00171 Aldehyde dehydrogenase family ACP_1690 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ACP_1690 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ACP_1692 PF00672 HAMP domain ACP_1692 PF00989 PAS fold ACP_1692 PF00512 His Kinase A (phospho-acceptor) domain ACP_1692 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1693 PF02954 Bacterial regulatory protein, Fis family ACP_1693 PF00158 Sigma-54 interaction domain ACP_1693 PF00072 Response regulator receiver domain ACP_1697 PF01926 50S ribosome-binding GTPase ACP_1697 PF07650 KH domain ACP_1698 PF03471 Transporter associated domain ACP_1698 PF01595 Cyclin M transmembrane N-terminal domain ACP_1698 PF00571 CBS domain ACP_1699 PF02130 Uncharacterized protein family UPF0054 ACP_1700 PF02562 PhoH-like protein ACP_1701 PF00005 ABC transporter ACP_1701 PF02687 FtsX-like permease family ACP_1701 PF12704 MacB-like periplasmic core domain ACP_1704 PF00924 Mechanosensitive ion channel ACP_1706 PF07885 Ion channel ACP_1706 PF02254 TrkA-N domain ACP_1707 PF01649 Ribosomal protein S20 ACP_1710 PF10609 NUBPL iron-transfer P-loop NTPase ACP_1711 PF03061 Thioesterase superfamily ACP_1716 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACP_1716 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACP_1717 PF08494 DEAD/H associated ACP_1717 PF00270 DEAD/DEAH box helicase ACP_1717 PF00271 Helicase conserved C-terminal domain ACP_1718 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACP_1719 PF02885 Glycosyl transferase family, helical bundle domain ACP_1719 PF00591 Glycosyl transferase family, a/b domain ACP_1719 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ACP_1720 PF07662 Na+ dependent nucleoside transporter C-terminus ACP_1720 PF01773 Na+ dependent nucleoside transporter N-terminus ACP_1720 PF07670 Nucleoside recognition ACP_1721 PF01048 Phosphorylase superfamily ACP_1723 PF00485 Phosphoribulokinase / Uridine kinase family ACP_1725 PF07238 PilZ domain ACP_1725 PF03552 Cellulose synthase ACP_1725 PF00535 Glycosyl transferase family 2 ACP_1729 PF01916 Deoxyhypusine synthase ACP_1732 PF00072 Response regulator receiver domain ACP_1732 PF00486 Transcriptional regulatory protein, C terminal ACP_1735 PF11146 Protein of unknown function (DUF2905) ACP_1736 PF02601 Exonuclease VII, large subunit ACP_1736 PF13742 OB-fold nucleic acid binding domain ACP_1737 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACP_1737 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACP_1737 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACP_1737 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACP_1738 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACP_1738 PF01367 5'-3' exonuclease, C-terminal SAM fold ACP_1738 PF00476 DNA polymerase family A ACP_1738 PF01612 3'-5' exonuclease ACP_1739 PF02547 Queuosine biosynthesis protein ACP_1742 PF13732 Domain of unknown function (DUF4162) ACP_1742 PF00005 ABC transporter ACP_1743 PF00271 Helicase conserved C-terminal domain ACP_1743 PF00270 DEAD/DEAH box helicase ACP_1743 PF17191 RecG wedge domain ACP_1744 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) ACP_1745 PF00795 Carbon-nitrogen hydrolase ACP_1746 PF04371 Porphyromonas-type peptidyl-arginine deiminase ACP_1748 PF14437 MafB19-like deaminase ACP_1755 PF02021 Uncharacterised protein family UPF0102 ACP_1756 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ACP_1756 PF12708 Pectate lyase superfamily protein ACP_1756 PF13229 Right handed beta helix region ACP_1764 PF08240 Alcohol dehydrogenase GroES-like domain ACP_1764 PF00107 Zinc-binding dehydrogenase ACP_1767 PF00793 DAHP synthetase I family ACP_1767 PF18152 DAHP synthase ferredoxin-like domain ACP_1769 PF00290 Tryptophan synthase alpha chain ACP_1770 PF00291 Pyridoxal-phosphate dependent enzyme ACP_1771 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACP_1772 PF00218 Indole-3-glycerol phosphate synthase ACP_1776 PF02801 Beta-ketoacyl synthase, C-terminal domain ACP_1776 PF00109 Beta-ketoacyl synthase, N-terminal domain ACP_1777 PF00550 Phosphopantetheine attachment site ACP_1778 PF02646 RmuC family ACP_1783 PF02772 S-adenosylmethionine synthetase, central domain ACP_1783 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACP_1783 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACP_1785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1785 PF00512 His Kinase A (phospho-acceptor) domain ACP_1785 PF00989 PAS fold ACP_1788 PF01266 FAD dependent oxidoreductase ACP_1789 PF00285 Citrate synthase, C-terminal domain ACP_1793 PF00580 UvrD/REP helicase N-terminal domain ACP_1793 PF13361 UvrD-like helicase C-terminal domain ACP_1795 PF13520 Amino acid permease ACP_1801 PF00830 Ribosomal L28 family ACP_1803 PF01507 Phosphoadenosine phosphosulfate reductase family ACP_1804 PF00009 Elongation factor Tu GTP binding domain ACP_1805 PF01507 Phosphoadenosine phosphosulfate reductase family ACP_1806 PF01641 SelR domain ACP_1807 PF01042 Endoribonuclease L-PSP ACP_1809 PF00533 BRCA1 C Terminus (BRCT) domain ACP_1809 PF01653 NAD-dependent DNA ligase adenylation domain ACP_1809 PF12826 Helix-hairpin-helix motif ACP_1809 PF03120 NAD-dependent DNA ligase OB-fold domain ACP_1809 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ACP_1810 PF09286 Pro-kumamolisin, activation domain ACP_1810 PF00082 Subtilase family ACP_1811 PF01039 Carboxyl transferase domain ACP_1813 PF11799 impB/mucB/samB family C-terminal domain ACP_1813 PF00817 impB/mucB/samB family ACP_1813 PF11798 IMS family HHH motif ACP_1815 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACP_1816 PF05973 Phage derived protein Gp49-like (DUF891) ACP_1818 PF10410 DnaB-helicase binding domain of primase ACP_1818 PF08275 DNA primase catalytic core, N-terminal domain ACP_1818 PF01807 CHC2 zinc finger ACP_1820 PF13537 Glutamine amidotransferase domain ACP_1820 PF00733 Asparagine synthase ACP_1824 PF04389 Peptidase family M28 ACP_1824 PF02225 PA domain ACP_1828 PF01409 tRNA synthetases class II core domain (F) ACP_1828 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACP_1830 PF03147 Ferredoxin-fold anticodon binding domain ACP_1830 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACP_1830 PF01588 Putative tRNA binding domain ACP_1830 PF03483 B3/4 domain ACP_1830 PF03484 tRNA synthetase B5 domain ACP_1832 PF05164 Cell division protein ZapA ACP_1834 PF01790 Prolipoprotein diacylglyceryl transferase ACP_1835 PF00849 RNA pseudouridylate synthase ACP_1836 PF02566 OsmC-like protein ACP_1838 PF02627 Carboxymuconolactone decarboxylase family ACP_1845 PF01967 MoaC family ACP_1846 PF00994 Probable molybdopterin binding domain ACP_1846 PF03454 MoeA C-terminal region (domain IV) ACP_1846 PF03453 MoeA N-terminal region (domain I and II) ACP_1848 PF06508 Queuosine biosynthesis protein QueC ACP_1851 PF01740 STAS domain ACP_1851 PF00916 Sulfate permease family ACP_1852 PF01134 Glucose inhibited division protein A ACP_1853 PF12704 MacB-like periplasmic core domain ACP_1853 PF00005 ABC transporter ACP_1853 PF02687 FtsX-like permease family ACP_1858 PF13282 Domain of unknown function (DUF4070) ACP_1858 PF02310 B12 binding domain ACP_1858 PF04055 Radical SAM superfamily ACP_1864 PF01425 Amidase ACP_1865 PF02686 Glu-tRNAGln amidotransferase C subunit ACP_1866 PF02397 Bacterial sugar transferase ACP_1867 PF04321 RmlD substrate binding domain ACP_1868 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACP_1869 PF00483 Nucleotidyl transferase ACP_1870 PF16363 GDP-mannose 4,6 dehydratase ACP_1876 PF00171 Aldehyde dehydrogenase family ACP_1877 PF00730 HhH-GPD superfamily base excision DNA repair protein ACP_1881 PF03631 Virulence factor BrkB ACP_1882 PF02887 Pyruvate kinase, alpha/beta domain ACP_1882 PF00224 Pyruvate kinase, barrel domain ACP_1882 PF00391 PEP-utilising enzyme, mobile domain ACP_1883 PF01119 DNA mismatch repair protein, C-terminal domain ACP_1883 PF08676 MutL C terminal dimerisation domain ACP_1887 PF02224 Cytidylate kinase ACP_1893 PF08281 Sigma-70, region 4 ACP_1893 PF04542 Sigma-70 region 2 ACP_1894 PF00483 Nucleotidyl transferase ACP_1899 PF07859 alpha/beta hydrolase fold ACP_1900 PF07690 Major Facilitator Superfamily ACP_1901 PF10282 Lactonase, 7-bladed beta-propeller ACP_1902 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACP_1903 PF01546 Peptidase family M20/M25/M40 ACP_1903 PF07687 Peptidase dimerisation domain ACP_1905 PF02545 Maf-like protein ACP_1906 PF01112 Asparaginase ACP_1909 PF01967 MoaC family ACP_1909 PF00994 Probable molybdopterin binding domain ACP_1916 PF00155 Aminotransferase class I and II ACP_1917 PF01431 Peptidase family M13 ACP_1917 PF05649 Peptidase family M13 ACP_1923 PF00698 Acyl transferase domain ACP_1925 PF02504 Fatty acid synthesis protein ACP_1926 PF01783 Ribosomal L32p protein family ACP_1928 PF01565 FAD binding domain ACP_1928 PF04030 D-arabinono-1,4-lactone oxidase ACP_1932 PF01425 Amidase ACP_1933 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACP_1933 PF00005 ABC transporter ACP_1935 PF04193 PQ loop repeat ACP_1937 PF03641 Possible lysine decarboxylase ACP_1941 PF01494 FAD binding domain ACP_1942 PF02909 Tetracyclin repressor-like, C-terminal domain ACP_1942 PF00440 Bacterial regulatory proteins, tetR family ACP_1943 PF00581 Rhodanese-like domain ACP_1943 PF00753 Metallo-beta-lactamase superfamily ACP_1944 PF01638 HxlR-like helix-turn-helix ACP_1952 PF03781 Sulfatase-modifying factor enzyme 1 ACP_1953 PF10017 Histidine-specific methyltransferase, SAM-dependent ACP_1954 PF02615 Malate/L-lactate dehydrogenase ACP_1955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACP_1955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACP_1956 PF01381 Helix-turn-helix ACP_1958 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ACP_1960 PF17151 Periplasmic sensor domain ACP_1960 PF00990 Diguanylate cyclase, GGDEF domain ACP_1961 PF01520 N-acetylmuramoyl-L-alanine amidase ACP_1962 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACP_1962 PF01411 tRNA synthetases class II (A) ACP_1962 PF02272 DHHA1 domain ACP_1964 PF00672 HAMP domain ACP_1964 PF07228 Stage II sporulation protein E (SpoIIE) ACP_1967 PF03033 Glycosyltransferase family 28 N-terminal domain ACP_1967 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase ACP_1970 PF17189 Glycosyl hydrolase family 30 beta sandwich domain ACP_1971 PF07690 Major Facilitator Superfamily ACP_1972 PF00512 His Kinase A (phospho-acceptor) domain ACP_1972 PF00989 PAS fold ACP_1972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_1973 PF04362 Bacterial Fe(2+) trafficking ACP_1974 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain ACP_1974 PF01522 Polysaccharide deacetylase ACP_1975 PF13180 PDZ domain ACP_1976 PF01121 Dephospho-CoA kinase ACP_1977 PF03966 Trm112p-like protein ACP_1979 PF01965 DJ-1/PfpI family ACP_1980 PF01078 Magnesium chelatase, subunit ChlI ACP_1980 PF13335 Magnesium chelatase, subunit ChlI C-terminal ACP_1985 PF00873 AcrB/AcrD/AcrF family ACP_1989 PF04542 Sigma-70 region 2 ACP_1989 PF08281 Sigma-70, region 4 ACP_1993 PF05190 MutS family domain IV ACP_1993 PF01624 MutS domain I ACP_1993 PF05188 MutS domain II ACP_1993 PF00488 MutS domain V ACP_1993 PF05192 MutS domain III ACP_2002 PF02569 Pantoate-beta-alanine ligase ACP_2003 PF02548 Ketopantoate hydroxymethyltransferase ACP_2006 PF02687 FtsX-like permease family ACP_2006 PF00005 ABC transporter ACP_2006 PF12704 MacB-like periplasmic core domain ACP_2007 PF02687 FtsX-like permease family ACP_2007 PF00005 ABC transporter ACP_2007 PF12704 MacB-like periplasmic core domain ACP_2011 PF00156 Phosphoribosyl transferase domain ACP_2012 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACP_2012 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACP_2013 PF01979 Amidohydrolase family ACP_2014 PF00773 RNB domain ACP_2014 PF00575 S1 RNA binding domain ACP_2014 PF08206 Ribonuclease B OB domain ACP_2014 PF08461 Ribonuclease R winged-helix domain ACP_2014 PF17876 Cold shock domain ACP_2016 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACP_2019 PF00633 Helix-hairpin-helix motif ACP_2019 PF00730 HhH-GPD superfamily base excision DNA repair protein ACP_2019 PF14815 NUDIX domain ACP_2020 PF00962 Adenosine/AMP deaminase ACP_2022 PF00694 Aconitase C-terminal domain ACP_2022 PF00330 Aconitase family (aconitate hydratase) ACP_2023 PF03070 TENA/THI-4/PQQC family ACP_2025 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACP_2025 PF02843 Phosphoribosylglycinamide synthetase, C domain ACP_2025 PF02844 Phosphoribosylglycinamide synthetase, N domain ACP_2030 PF00216 Bacterial DNA-binding protein ACP_2035 PF00271 Helicase conserved C-terminal domain ACP_2035 PF08494 DEAD/H associated ACP_2035 PF00270 DEAD/DEAH box helicase ACP_2036 PF00004 ATPase family associated with various cellular activities (AAA) ACP_2036 PF17862 AAA+ lid domain ACP_2036 PF06480 FtsH Extracellular ACP_2036 PF01434 Peptidase family M41 ACP_2037 PF14622 Ribonuclease-III-like ACP_2037 PF00035 Double-stranded RNA binding motif ACP_2038 PF10502 Signal peptidase, peptidase S26 ACP_2039 PF10502 Signal peptidase, peptidase S26 ACP_2042 PF00588 SpoU rRNA Methylase family ACP_2042 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACP_2046 PF04542 Sigma-70 region 2 ACP_2046 PF08281 Sigma-70, region 4 ACP_2049 PF00072 Response regulator receiver domain ACP_2049 PF04397 LytTr DNA-binding domain ACP_2054 PF07499 RuvA, C-terminal domain ACP_2054 PF01330 RuvA N terminal domain ACP_2061 PF03169 OPT oligopeptide transporter protein ACP_2062 PF00296 Luciferase-like monooxygenase ACP_2063 PF01820 D-ala D-ala ligase N-terminus ACP_2063 PF07478 D-ala D-ala ligase C-terminus ACP_2064 PF03948 Ribosomal protein L9, C-terminal domain ACP_2064 PF01281 Ribosomal protein L9, N-terminal domain ACP_2065 PF01084 Ribosomal protein S18 ACP_2066 PF01250 Ribosomal protein S6 ACP_2067 PF01195 Peptidyl-tRNA hydrolase ACP_2068 PF14693 Ribosomal protein TL5, C-terminal domain ACP_2068 PF01386 Ribosomal L25p family ACP_2069 PF14572 Phosphoribosyl synthetase-associated domain ACP_2069 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACP_2071 PF08544 GHMP kinases C terminal ACP_2071 PF00288 GHMP kinases N terminal domain ACP_2074 PF00202 Aminotransferase class-III ACP_2075 PF01230 HIT domain ACP_2077 PF06071 Protein of unknown function (DUF933) ACP_2077 PF01926 50S ribosome-binding GTPase ACP_2078 PF17757 UvrB interaction domain ACP_2078 PF00271 Helicase conserved C-terminal domain ACP_2078 PF02559 CarD-like/TRCF domain ACP_2078 PF03461 TRCF domain ACP_2078 PF00270 DEAD/DEAH box helicase ACP_2079 PF00483 Nucleotidyl transferase ACP_2080 PF17864 RuvB AAA lid domain ACP_2080 PF05491 RuvB C-terminal winged helix domain ACP_2080 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACP_2081 PF08448 PAS fold ACP_2081 PF08447 PAS fold ACP_2081 PF00563 EAL domain ACP_2081 PF00990 Diguanylate cyclase, GGDEF domain ACP_2083 PF02661 Fic/DOC family ACP_2083 PF13784 Fic/DOC family N-terminal ACP_2084 PF03989 DNA gyrase C-terminal domain, beta-propeller ACP_2084 PF00521 DNA gyrase/topoisomerase IV, subunit A ACP_2085 PF03928 Haem-degrading ACP_2086 PF01628 HrcA protein C terminal domain ACP_2086 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ACP_2087 PF01025 GrpE ACP_2088 PF00226 DnaJ domain ACP_2088 PF01556 DnaJ C terminal domain ACP_2088 PF00684 DnaJ central domain ACP_2090 PF08240 Alcohol dehydrogenase GroES-like domain ACP_2090 PF00107 Zinc-binding dehydrogenase ACP_2091 PF00174 Oxidoreductase molybdopterin binding domain ACP_2092 PF01292 Prokaryotic cytochrome b561 ACP_2093 PF02416 mttA/Hcf106 family ACP_2096 PF08669 Glycine cleavage T-protein C-terminal barrel domain ACP_2096 PF01571 Aminomethyltransferase folate-binding domain ACP_2097 PF01597 Glycine cleavage H-protein ACP_2098 PF02347 Glycine cleavage system P-protein ACP_2099 PF02347 Glycine cleavage system P-protein ACP_2110 PF00268 Ribonucleotide reductase, small chain ACP_2111 PF00317 Ribonucleotide reductase, all-alpha domain ACP_2111 PF03477 ATP cone domain ACP_2111 PF02867 Ribonucleotide reductase, barrel domain ACP_2112 PF07730 Histidine kinase ACP_2113 PF00196 Bacterial regulatory proteins, luxR family ACP_2113 PF00072 Response regulator receiver domain ACP_2117 PF14849 YidC periplasmic domain ACP_2117 PF02096 60Kd inner membrane protein ACP_2119 PF01809 Putative membrane protein insertion efficiency factor ACP_2120 PF00825 Ribonuclease P ACP_2121 PF00468 Ribosomal protein L34 ACP_2123 PF11638 DnaA N-terminal domain ACP_2123 PF08299 Bacterial dnaA protein helix-turn-helix ACP_2123 PF00308 Bacterial dnaA protein ACP_2124 PF01757 Acyltransferase family ACP_2125 PF00005 ABC transporter ACP_2125 PF12704 MacB-like periplasmic core domain ACP_2125 PF02687 FtsX-like permease family ACP_2130 PF06965 Na+/H+ antiporter 1 ACP_2130 PF13462 Thioredoxin ACP_2131 PF09312 SurA N-terminal domain ACP_2132 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACP_2132 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACP_2133 PF00364 Biotin-requiring enzyme ACP_2134 PF02785 Biotin carboxylase C-terminal domain ACP_2134 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACP_2134 PF00289 Biotin carboxylase, N-terminal domain ACP_2136 PF02472 Biopolymer transport protein ExbD/TolR ACP_2137 PF02472 Biopolymer transport protein ExbD/TolR ACP_2138 PF01618 MotA/TolQ/ExbB proton channel family ACP_2140 PF02355 Protein export membrane protein ACP_2140 PF07549 SecD/SecF GG Motif ACP_2141 PF07549 SecD/SecF GG Motif ACP_2141 PF02355 Protein export membrane protein ACP_2142 PF02699 Preprotein translocase subunit ACP_2145 PF00578 AhpC/TSA family ACP_2149 PF13472 GDSL-like Lipase/Acylhydrolase family ACP_2149 PF07859 alpha/beta hydrolase fold ACP_2154 PF01702 Queuine tRNA-ribosyltransferase ACP_2155 PF00593 TonB dependent receptor ACP_2159 PF01926 50S ribosome-binding GTPase ACP_2159 PF01018 GTP1/OBG ACP_2160 PF01168 Alanine racemase, N-terminal domain ACP_2160 PF00842 Alanine racemase, C-terminal domain ACP_2161 PF03073 TspO/MBR family ACP_2162 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACP_2162 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACP_2162 PF02824 TGS domain ACP_2162 PF03129 Anticodon binding domain ACP_2163 PF17191 RecG wedge domain ACP_2163 PF13749 Putative ATP-dependent DNA helicase recG C-terminal ACP_2163 PF00270 DEAD/DEAH box helicase ACP_2164 PF00376 MerR family regulatory protein ACP_2164 PF13614 AAA domain ACP_2169 PF08245 Mur ligase middle domain ACP_2169 PF02875 Mur ligase family, glutamate ligase domain ACP_2170 PF01553 Acyltransferase ACP_2171 PF07722 Peptidase C26 ACP_2172 PF02527 rRNA small subunit methyltransferase G ACP_2173 PF13614 AAA domain ACP_2174 PF17762 HTH domain found in ParB protein ACP_2174 PF02195 ParB-like nuclease domain ACP_2183 PF12631 MnmE helical domain ACP_2183 PF01926 50S ribosome-binding GTPase ACP_2183 PF10396 GTP-binding protein TrmE N-terminus ACP_2186 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ACP_2187 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ACP_2188 PF00490 Delta-aminolevulinic acid dehydratase ACP_2190 PF03652 Holliday junction resolvase ACP_2191 PF02618 YceG-like family ACP_2196 PF02767 DNA polymerase III beta subunit, central domain ACP_2196 PF00712 DNA polymerase III beta subunit, N-terminal domain ACP_2196 PF02768 DNA polymerase III beta subunit, C-terminal domain ACP_2197 PF00072 Response regulator receiver domain ACP_2197 PF02954 Bacterial regulatory protein, Fis family ACP_2198 PF00512 His Kinase A (phospho-acceptor) domain ACP_2198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2201 PF03601 Conserved hypothetical protein 698 ACP_2202 PF03466 LysR substrate binding domain ACP_2202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACP_2204 PF01336 OB-fold nucleic acid binding domain ACP_2204 PF00152 tRNA synthetases class II (D, K and N) ACP_2205 PF00491 Arginase family ACP_2207 PF01381 Helix-turn-helix ACP_2208 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ACP_2209 PF07478 D-ala D-ala ligase C-terminus ACP_2209 PF01820 D-ala D-ala ligase N-terminus ACP_2212 PF00440 Bacterial regulatory proteins, tetR family ACP_2214 PF00679 Elongation factor G C-terminus ACP_2214 PF03144 Elongation factor Tu domain 2 ACP_2214 PF14492 Elongation Factor G, domain II ACP_2214 PF00009 Elongation factor Tu GTP binding domain ACP_2214 PF03764 Elongation factor G, domain IV ACP_2218 PF00999 Sodium/hydrogen exchanger family ACP_2219 PF00892 EamA-like transporter family ACP_2220 PF01406 tRNA synthetases class I (C) catalytic domain ACP_2220 PF09190 DALR domain ACP_2221 PF00814 Glycoprotease family ACP_2222 PF13735 tRNA nucleotidyltransferase domain 2 putative ACP_2222 PF12627 Probable RNA and SrmB- binding site of polymerase A ACP_2222 PF01743 Poly A polymerase head domain ACP_2223 PF03449 Transcription elongation factor, N-terminal ACP_2223 PF01272 Transcription elongation factor, GreA/GreB, C-term ACP_2225 PF00106 short chain dehydrogenase ACP_2227 PF08501 Shikimate dehydrogenase substrate binding domain ACP_2227 PF01488 Shikimate / quinate 5-dehydrogenase ACP_2227 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ACP_2228 PF01432 Peptidase family M3 ACP_2233 PF00871 Acetokinase family ACP_2235 PF09363 XFP C-terminal domain ACP_2235 PF09364 XFP N-terminal domain ACP_2235 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase ACP_2243 PF01209 ubiE/COQ5 methyltransferase family ACP_2244 PF01740 STAS domain ACP_2247 PF01632 Ribosomal protein L35 ACP_2248 PF00453 Ribosomal protein L20 ACP_2249 PF00809 Pterin binding enzyme ACP_2250 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ACP_2251 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACP_2252 PF01712 Deoxynucleoside kinase ACP_2253 PF00707 Translation initiation factor IF-3, C-terminal domain ACP_2253 PF05198 Translation initiation factor IF-3, N-terminal domain ACP_2254 PF00072 Response regulator receiver domain ACP_2254 PF00486 Transcriptional regulatory protein, C terminal ACP_2257 PF01165 Ribosomal protein S21 ACP_2260 PF00709 Adenylosuccinate synthetase ACP_2261 PF06827 Zinc finger found in FPG and IleRS ACP_2261 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACP_2261 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACP_2265 PF17848 Acetyl-coA carboxylase zinc finger domain ACP_2265 PF01039 Carboxyl transferase domain ACP_2267 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ACP_2267 PF12557 Cob(I)alamin adenosyltransferase N terminal ACP_2268 PF02590 Predicted SPOUT methyltransferase ACP_2269 PF00593 TonB dependent receptor ACP_2271 PF00488 MutS domain V ACP_2271 PF01713 Smr domain ACP_2273 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACP_2273 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACP_2274 PF09137 Glucodextranase, domain N ACP_2274 PF00723 Glycosyl hydrolases family 15 ACP_2276 PF02780 Transketolase, C-terminal domain ACP_2276 PF00456 Transketolase, thiamine diphosphate binding domain ACP_2276 PF02779 Transketolase, pyrimidine binding domain ACP_2277 PF02502 Ribose/Galactose Isomerase ACP_2278 PF13419 Haloacid dehalogenase-like hydrolase ACP_2279 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACP_2279 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ACP_2280 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACP_2280 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACP_2281 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ACP_2282 PF02685 Glucokinase ACP_2283 PF01062 Bestrophin, RFP-TM, chloride channel ACP_2284 PF11838 ERAP1-like C-terminal domain ACP_2284 PF01433 Peptidase family M1 domain ACP_2287 PF02245 Methylpurine-DNA glycosylase (MPG) ACP_2288 PF00578 AhpC/TSA family ACP_2290 PF02321 Outer membrane efflux protein ACP_2291 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_2292 PF00873 AcrB/AcrD/AcrF family ACP_2293 PF11897 Protein of unknown function (DUF3417) ACP_2293 PF00343 Carbohydrate phosphorylase ACP_2294 PF08544 GHMP kinases C terminal ACP_2294 PF10509 Galactokinase galactose-binding signature ACP_2294 PF00288 GHMP kinases N terminal domain ACP_2295 PF00282 Pyridoxal-dependent decarboxylase conserved domain ACP_2296 PF00313 'Cold-shock' DNA-binding domain ACP_2297 PF01431 Peptidase family M13 ACP_2297 PF05649 Peptidase family M13 ACP_2301 PF01593 Flavin containing amine oxidoreductase ACP_2302 PF00171 Aldehyde dehydrogenase family ACP_2303 PF01593 Flavin containing amine oxidoreductase ACP_2305 PF02594 Uncharacterised ACR, YggU family COG1872 ACP_2306 PF01168 Alanine racemase, N-terminal domain ACP_2307 PF04452 RNA methyltransferase ACP_2309 PF02803 Thiolase, C-terminal domain ACP_2309 PF00108 Thiolase, N-terminal domain ACP_2311 PF03315 Serine dehydratase beta chain ACP_2311 PF03313 Serine dehydratase alpha chain ACP_2314 PF02146 Sir2 family ACP_2315 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACP_2317 PF00575 S1 RNA binding domain ACP_2319 PF00111 2Fe-2S iron-sulfur cluster binding domain ACP_2319 PF01799 [2Fe-2S] binding domain ACP_2319 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACP_2320 PF00941 FAD binding domain in molybdopterin dehydrogenase ACP_2320 PF03450 CO dehydrogenase flavoprotein C-terminal domain ACP_2321 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ACP_2321 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ACP_2323 PF12804 MobA-like NTP transferase domain ACP_2325 PF17785 PUA-like domain ACP_2325 PF10672 S-adenosylmethionine-dependent methyltransferase ACP_2327 PF01479 S4 domain ACP_2327 PF00579 tRNA synthetases class I (W and Y) ACP_2328 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACP_2329 PF01029 NusB family ACP_2330 PF00378 Enoyl-CoA hydratase/isomerase ACP_2332 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACP_2333 PF13183 4Fe-4S dicluster domain ACP_2333 PF01565 FAD binding domain ACP_2333 PF02913 FAD linked oxidases, C-terminal domain ACP_2335 PF00977 Histidine biosynthesis protein ACP_2336 PF00977 Histidine biosynthesis protein ACP_2337 PF00117 Glutamine amidotransferase class-I ACP_2338 PF00475 Imidazoleglycerol-phosphate dehydratase ACP_2339 PF00155 Aminotransferase class I and II ACP_2340 PF00815 Histidinol dehydrogenase ACP_2341 PF08029 HisG, C-terminal domain ACP_2341 PF01634 ATP phosphoribosyltransferase ACP_2342 PF01502 Phosphoribosyl-AMP cyclohydrolase ACP_2343 PF13426 PAS domain ACP_2343 PF00072 Response regulator receiver domain ACP_2343 PF08448 PAS fold ACP_2343 PF00512 His Kinase A (phospho-acceptor) domain ACP_2343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2344 PF00793 DAHP synthetase I family ACP_2346 PF01336 OB-fold nucleic acid binding domain ACP_2346 PF00152 tRNA synthetases class II (D, K and N) ACP_2348 PF13393 Histidyl-tRNA synthetase ACP_2348 PF03129 Anticodon binding domain ACP_2349 PF13932 GidA associated domain ACP_2349 PF01134 Glucose inhibited division protein A ACP_2350 PF00270 DEAD/DEAH box helicase ACP_2350 PF00271 Helicase conserved C-terminal domain ACP_2353 PF00999 Sodium/hydrogen exchanger family ACP_2354 PF00364 Biotin-requiring enzyme ACP_2354 PF02817 e3 binding domain ACP_2354 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACP_2355 PF02222 ATP-grasp domain ACP_2355 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ACP_2356 PF00731 AIR carboxylase ACP_2378 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACP_2380 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_2380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACP_2381 PF02581 Thiamine monophosphate synthase ACP_2383 PF13186 Iron-sulfur cluster-binding domain ACP_2383 PF04055 Radical SAM superfamily ACP_2384 PF00595 PDZ domain ACP_2386 PF08281 Sigma-70, region 4 ACP_2386 PF04542 Sigma-70 region 2 ACP_2389 PF00300 Histidine phosphatase superfamily (branch 1) ACP_2389 PF13456 Reverse transcriptase-like ACP_2390 PF09424 Yqey-like protein ACP_2391 PF00266 Aminotransferase class-V ACP_2392 PF01842 ACT domain ACP_2392 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACP_2392 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACP_2396 PF02673 Bacitracin resistance protein BacA ACP_2397 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACP_2397 PF02770 Acyl-CoA dehydrogenase, middle domain ACP_2397 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACP_2398 PF00005 ABC transporter ACP_2398 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACP_2402 PF08281 Sigma-70, region 4 ACP_2402 PF04542 Sigma-70 region 2 ACP_2403 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACP_2406 PF00011 Hsp20/alpha crystallin family ACP_2407 PF02861 Clp amino terminal domain, pathogenicity island component ACP_2407 PF17871 AAA lid domain ACP_2407 PF07724 AAA domain (Cdc48 subfamily) ACP_2407 PF10431 C-terminal, D2-small domain, of ClpB protein ACP_2407 PF00004 ATPase family associated with various cellular activities (AAA) ACP_2408 PF00593 TonB dependent receptor ACP_2409 PF00654 Voltage gated chloride channel ACP_2410 PF16338 Domain of unknown function (DUF4968) ACP_2410 PF17137 Domain of unknown function (DUF5110) ACP_2410 PF01055 Glycosyl hydrolases family 31 ACP_2410 PF13802 Galactose mutarotase-like ACP_2412 PF00933 Glycosyl hydrolase family 3 N terminal domain ACP_2412 PF14310 Fibronectin type III-like domain ACP_2412 PF07691 PA14 domain ACP_2412 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACP_2414 PF07885 Ion channel ACP_2414 PF02254 TrkA-N domain ACP_2415 PF07691 PA14 domain ACP_2415 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACP_2415 PF00933 Glycosyl hydrolase family 3 N terminal domain ACP_2415 PF14310 Fibronectin type III-like domain ACP_2416 PF03648 Glycosyl hydrolase family 67 N-terminus ACP_2416 PF07477 Glycosyl hydrolase family 67 C-terminus ACP_2416 PF07488 Glycosyl hydrolase family 67 middle domain ACP_2417 PF00106 short chain dehydrogenase ACP_2418 PF01568 Molydopterin dinucleotide binding domain ACP_2418 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACP_2418 PF00384 Molybdopterin oxidoreductase ACP_2419 PF07244 Surface antigen variable number repeat ACP_2419 PF01103 Surface antigen ACP_2423 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACP_2423 PF01411 tRNA synthetases class II (A) ACP_2423 PF02272 DHHA1 domain ACP_2424 PF01625 Peptide methionine sulfoxide reductase ACP_2427 PF03641 Possible lysine decarboxylase ACP_2429 PF00703 Glycosyl hydrolases family 2 ACP_2429 PF02837 Glycosyl hydrolases family 2, sugar binding domain ACP_2429 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain ACP_2431 PF00326 Prolyl oligopeptidase family ACP_2431 PF07676 WD40-like Beta Propeller Repeat ACP_2432 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACP_2433 PF00762 Ferrochelatase ACP_2435 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ACP_2435 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACP_2437 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACP_2438 PF00510 Cytochrome c oxidase subunit III ACP_2442 PF00033 Cytochrome b/b6/petB ACP_2443 PF05154 TM2 domain ACP_2445 PF04542 Sigma-70 region 2 ACP_2445 PF04545 Sigma-70, region 4 ACP_2445 PF00140 Sigma-70 factor, region 1.2 ACP_2445 PF04539 Sigma-70 region 3 ACP_2445 PF04546 Sigma-70, non-essential region ACP_2445 PF03979 Sigma-70 factor, region 1.1 ACP_2453 PF06418 CTP synthase N-terminus ACP_2453 PF00117 Glutamine amidotransferase class-I ACP_2455 PF05221 S-adenosyl-L-homocysteine hydrolase ACP_2455 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACP_2459 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACP_2459 PF12833 Helix-turn-helix domain ACP_2459 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACP_2459 PF02805 Metal binding domain of Ada ACP_2461 PF10397 Adenylosuccinate lyase C-terminus ACP_2461 PF00206 Lyase ACP_2462 PF02441 Flavoprotein ACP_2464 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACP_2466 PF00156 Phosphoribosyl transferase domain ACP_2467 PF00990 Diguanylate cyclase, GGDEF domain ACP_2467 PF17151 Periplasmic sensor domain ACP_2469 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_2471 PF01739 CheR methyltransferase, SAM binding domain ACP_2471 PF03705 CheR methyltransferase, all-alpha domain ACP_2474 PF01063 Amino-transferase class IV ACP_2475 PF01914 MarC family integral membrane protein ACP_2495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACP_2495 PF07497 Rho termination factor, RNA-binding domain ACP_2495 PF07498 Rho termination factor, N-terminal domain ACP_2497 PF00392 Bacterial regulatory proteins, gntR family ACP_2498 PF00005 ABC transporter ACP_2502 PF00005 ABC transporter ACP_2502 PF02687 FtsX-like permease family ACP_2502 PF12704 MacB-like periplasmic core domain ACP_2503 PF02687 FtsX-like permease family ACP_2503 PF12704 MacB-like periplasmic core domain ACP_2503 PF00005 ABC transporter ACP_2504 PF00005 ABC transporter ACP_2504 PF12704 MacB-like periplasmic core domain ACP_2504 PF02687 FtsX-like permease family ACP_2506 PF00158 Sigma-54 interaction domain ACP_2506 PF00072 Response regulator receiver domain ACP_2506 PF02954 Bacterial regulatory protein, Fis family ACP_2507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2507 PF00512 His Kinase A (phospho-acceptor) domain ACP_2508 PF12704 MacB-like periplasmic core domain ACP_2508 PF02687 FtsX-like permease family ACP_2508 PF00005 ABC transporter ACP_2509 PF12704 MacB-like periplasmic core domain ACP_2509 PF02687 FtsX-like permease family ACP_2510 PF02687 FtsX-like permease family ACP_2510 PF00005 ABC transporter ACP_2510 PF12704 MacB-like periplasmic core domain ACP_2511 PF01204 Trehalase ACP_2515 PF00128 Alpha amylase, catalytic domain ACP_2516 PF02566 OsmC-like protein ACP_2519 PF00593 TonB dependent receptor ACP_2519 PF00593 TonB dependent receptor ACP_2520 PF00128 Alpha amylase, catalytic domain ACP_2520 PF10438 Cyclo-malto-dextrinase C-terminal domain ACP_2520 PF09087 Cyclomaltodextrinase, N-terminal ACP_2521 PF00248 Aldo/keto reductase family ACP_2530 PF00083 Sugar (and other) transporter ACP_2531 PF02321 Outer membrane efflux protein ACP_2532 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_2533 PF00005 ABC transporter ACP_2535 PF00011 Hsp20/alpha crystallin family ACP_2541 PF01066 CDP-alcohol phosphatidyltransferase ACP_2543 PF02082 Transcriptional regulator ACP_2544 PF00266 Aminotransferase class-V ACP_2545 PF01592 NifU-like N terminal domain ACP_2546 PF01521 Iron-sulphur cluster biosynthesis ACP_2547 PF07743 HSCB C-terminal oligomerisation domain ACP_2548 PF14552 Tautomerase enzyme ACP_2549 PF00012 Hsp70 protein ACP_2550 PF00111 2Fe-2S iron-sulfur cluster binding domain ACP_2551 PF04384 Iron-sulphur cluster assembly ACP_2552 PF12849 PBP superfamily domain ACP_2553 PF00528 Binding-protein-dependent transport system inner membrane component ACP_2554 PF00528 Binding-protein-dependent transport system inner membrane component ACP_2557 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACP_2557 PF00578 AhpC/TSA family ACP_2558 PF02567 Phenazine biosynthesis-like protein ACP_2560 PF00005 ABC transporter ACP_2563 PF05973 Phage derived protein Gp49-like (DUF891) ACP_2565 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACP_2566 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACP_2567 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACP_2568 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACP_2570 PF00146 NADH dehydrogenase ACP_2572 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACP_2573 PF00361 Proton-conducting membrane transporter ACP_2573 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus ACP_2573 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACP_2574 PF00361 Proton-conducting membrane transporter ACP_2575 PF00361 Proton-conducting membrane transporter ACP_2576 PF00361 Proton-conducting membrane transporter ACP_2577 PF12706 Beta-lactamase superfamily domain ACP_2578 PF05958 tRNA (Uracil-5-)-methyltransferase ACP_2578 PF01938 TRAM domain ACP_2580 PF03309 Type III pantothenate kinase ACP_2581 PF02237 Biotin protein ligase C terminal domain ACP_2581 PF08279 HTH domain ACP_2581 PF03099 Biotin/lipoate A/B protein ligase family ACP_2582 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACP_2582 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACP_2583 PF00133 tRNA synthetases class I (I, L, M and V) ACP_2583 PF08264 Anticodon-binding domain of tRNA ACP_2583 PF10458 Valyl tRNA synthetase tRNA binding arm ACP_2585 PF00834 Ribulose-phosphate 3 epimerase family ACP_2588 PF00534 Glycosyl transferases group 1 ACP_2588 PF13477 Glycosyl transferase 4-like ACP_2589 PF00849 RNA pseudouridylate synthase ACP_2589 PF01479 S4 domain ACP_2590 PF04079 Segregation and condensation complex subunit ScpB ACP_2591 PF02616 Segregation and condensation protein ScpA ACP_2592 PF00579 tRNA synthetases class I (W and Y) ACP_2594 PF02163 Peptidase family M50 ACP_2595 PF07883 Cupin domain ACP_2598 PF02885 Glycosyl transferase family, helical bundle domain ACP_2598 PF00591 Glycosyl transferase family, a/b domain ACP_2600 PF00263 Bacterial type II and III secretion system protein ACP_2600 PF04972 BON domain ACP_2600 PF13629 Pilus formation protein N terminal region ACP_2606 PF01695 IstB-like ATP binding protein ACP_2609 PF13683 Integrase core domain ACP_2609 PF13276 HTH-like domain ACP_2610 PF01527 Transposase ACP_2612 PF08442 ATP-grasp domain ACP_2612 PF00549 CoA-ligase ACP_2614 PF00549 CoA-ligase ACP_2614 PF02629 CoA binding domain ACP_2617 PF00334 Nucleoside diphosphate kinase ACP_2619 PF00248 Aldo/keto reductase family ACP_2624 PF08459 UvrC Helix-hairpin-helix N-terminal ACP_2624 PF01541 GIY-YIG catalytic domain ACP_2624 PF02151 UvrB/uvrC motif ACP_2624 PF12826 Helix-hairpin-helix motif ACP_2625 PF01523 Putative modulator of DNA gyrase ACP_2626 PF01523 Putative modulator of DNA gyrase ACP_2627 PF12867 DinB superfamily ACP_2630 PF03824 High-affinity nickel-transport protein ACP_2633 PF08338 Domain of unknown function (DUF1731) ACP_2633 PF01370 NAD dependent epimerase/dehydratase family ACP_2635 PF01557 Fumarylacetoacetate (FAA) hydrolase family ACP_2636 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACP_2637 PF07977 FabA-like domain ACP_2638 PF00132 Bacterial transferase hexapeptide (six repeats) ACP_2638 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACP_2640 PF00578 AhpC/TSA family ACP_2642 PF01464 Transglycosylase SLT domain ACP_2642 PF01476 LysM domain ACP_2643 PF03144 Elongation factor Tu domain 2 ACP_2643 PF00009 Elongation factor Tu GTP binding domain ACP_2643 PF00679 Elongation factor G C-terminus ACP_2643 PF06421 GTP-binding protein LepA C-terminus ACP_2644 PF07859 alpha/beta hydrolase fold ACP_2646 PF00753 Metallo-beta-lactamase superfamily ACP_2647 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ACP_2647 PF00326 Prolyl oligopeptidase family ACP_2648 PF00005 ABC transporter ACP_2648 PF02687 FtsX-like permease family ACP_2648 PF12704 MacB-like periplasmic core domain ACP_2649 PF02073 Thermophilic metalloprotease (M29) ACP_2650 PF17827 PrmC N-terminal domain ACP_2650 PF05175 Methyltransferase small domain ACP_2651 PF03462 PCRF domain ACP_2651 PF00472 RF-1 domain ACP_2652 PF04679 ATP dependent DNA ligase C terminal region ACP_2652 PF01068 ATP dependent DNA ligase domain ACP_2652 PF04675 DNA ligase N terminus ACP_2654 PF01545 Cation efflux family ACP_2654 PF16916 Dimerisation domain of Zinc Transporter ACP_2656 PF00227 Proteasome subunit ACP_2657 PF00004 ATPase family associated with various cellular activities (AAA) ACP_2657 PF07724 AAA domain (Cdc48 subfamily) ACP_2666 PF01566 Natural resistance-associated macrophage protein ACP_2667 PF01325 Iron dependent repressor, N-terminal DNA binding domain ACP_2667 PF18357 Diphteria toxin repressor SH3 domain ACP_2667 PF02742 Iron dependent repressor, metal binding and dimerisation domain ACP_2671 PF04542 Sigma-70 region 2 ACP_2671 PF08281 Sigma-70, region 4 ACP_2674 PF05114 Protein of unknown function (DUF692) ACP_2676 PF00593 TonB dependent receptor ACP_2677 PF00295 Glycosyl hydrolases family 28 ACP_2678 PF00392 Bacterial regulatory proteins, gntR family ACP_2678 PF07729 FCD domain ACP_2679 PF00295 Glycosyl hydrolases family 28 ACP_2684 PF07690 Major Facilitator Superfamily ACP_2685 PF02614 Glucuronate isomerase ACP_2686 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACP_2686 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ACP_2686 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACP_2686 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ACP_2686 PF10371 Domain of unknown function ACP_2687 PF01479 S4 domain ACP_2689 PF03793 PASTA domain ACP_2689 PF00069 Protein kinase domain ACP_2690 PF11808 Phosphate regulon sensor protein PhoR ACP_2690 PF00989 PAS fold ACP_2690 PF00512 His Kinase A (phospho-acceptor) domain ACP_2690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2691 PF00072 Response regulator receiver domain ACP_2691 PF00486 Transcriptional regulatory protein, C terminal ACP_2694 PF04055 Radical SAM superfamily ACP_2694 PF06463 Molybdenum Cofactor Synthesis C ACP_2695 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACP_2696 PF04055 Radical SAM superfamily ACP_2697 PF01242 6-pyruvoyl tetrahydropterin synthase ACP_2699 PF04945 YHS domain ACP_2700 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_2703 PF11737 Protein of unknown function (DUF3300) ACP_2704 PF00501 AMP-binding enzyme ACP_2705 PF00593 TonB dependent receptor ACP_2705 PF07715 TonB-dependent Receptor Plug Domain ACP_2706 PF00773 RNB domain ACP_2706 PF08206 Ribonuclease B OB domain ACP_2709 PF00171 Aldehyde dehydrogenase family ACP_2711 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_2712 PF08448 PAS fold ACP_2712 PF00512 His Kinase A (phospho-acceptor) domain ACP_2712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2712 PF00072 Response regulator receiver domain ACP_2712 PF13188 PAS domain ACP_2713 PF01618 MotA/TolQ/ExbB proton channel family ACP_2714 PF13677 Membrane MotB of proton-channel complex MotA/MotB ACP_2714 PF00691 OmpA family ACP_2715 PF01494 FAD binding domain ACP_2716 PF07228 Stage II sporulation protein E (SpoIIE) ACP_2716 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain ACP_2717 PF00593 TonB dependent receptor ACP_2718 PF05506 Domain of unknown function (DUF756) ACP_2718 PF04185 Phosphoesterase family ACP_2719 PF00128 Alpha amylase, catalytic domain ACP_2720 PF00128 Alpha amylase, catalytic domain ACP_2720 PF11941 Domain of unknown function (DUF3459) ACP_2722 PF03150 Di-haem cytochrome c peroxidase ACP_2722 PF00034 Cytochrome c ACP_2725 PF05506 Domain of unknown function (DUF756) ACP_2725 PF04185 Phosphoesterase family ACP_2726 PF00403 Heavy-metal-associated domain ACP_2726 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACP_2726 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_2728 PF00132 Bacterial transferase hexapeptide (six repeats) ACP_2728 PF06426 Serine acetyltransferase, N-terminal ACP_2729 PF00291 Pyridoxal-phosphate dependent enzyme ACP_2730 PF00005 ABC transporter ACP_2731 PF06165 Glycosyltransferase family 36 ACP_2731 PF10091 Putative glucoamylase ACP_2731 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ACP_2733 PF00171 Aldehyde dehydrogenase family ACP_2736 PF00390 Malic enzyme, N-terminal domain ACP_2736 PF03949 Malic enzyme, NAD binding domain ACP_2737 PF00296 Luciferase-like monooxygenase ACP_2742 PF00204 DNA gyrase B ACP_2742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2742 PF18053 DNA gyrase B subunit insert domain ACP_2742 PF00986 DNA gyrase B subunit, carboxyl terminus ACP_2742 PF01751 Toprim domain ACP_2746 PF01016 Ribosomal L27 protein ACP_2747 PF00829 Ribosomal prokaryotic L21 protein ACP_2748 PF04542 Sigma-70 region 2 ACP_2748 PF08281 Sigma-70, region 4 ACP_2753 PF18152 DAHP synthase ferredoxin-like domain ACP_2753 PF00793 DAHP synthetase I family ACP_2754 PF00989 PAS fold ACP_2754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2754 PF00512 His Kinase A (phospho-acceptor) domain ACP_2756 PF01578 Cytochrome C assembly protein ACP_2760 PF04073 Aminoacyl-tRNA editing domain ACP_2761 PF00005 ABC transporter ACP_2763 PF01964 Radical SAM ThiC family ACP_2765 PF17871 AAA lid domain ACP_2765 PF10431 C-terminal, D2-small domain, of ClpB protein ACP_2765 PF07724 AAA domain (Cdc48 subfamily) ACP_2765 PF02861 Clp amino terminal domain, pathogenicity island component ACP_2765 PF00004 ATPase family associated with various cellular activities (AAA) ACP_2766 PF00005 ABC transporter ACP_2768 PF12704 MacB-like periplasmic core domain ACP_2768 PF02687 FtsX-like permease family ACP_2774 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ACP_2774 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACP_2778 PF00593 TonB dependent receptor ACP_2781 PF01578 Cytochrome C assembly protein ACP_2781 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ACP_2784 PF00326 Prolyl oligopeptidase family ACP_2784 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ACP_2785 PF13419 Haloacid dehalogenase-like hydrolase ACP_2786 PF04851 Type III restriction enzyme, res subunit ACP_2786 PF12344 Ultra-violet resistance protein B ACP_2786 PF02151 UvrB/uvrC motif ACP_2786 PF17757 UvrB interaction domain ACP_2786 PF00271 Helicase conserved C-terminal domain ACP_2787 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACP_2789 PF00083 Sugar (and other) transporter ACP_2791 PF00596 Class II Aldolase and Adducin N-terminal domain ACP_2793 PF06964 Alpha-L-arabinofuranosidase C-terminal domain ACP_2793 PF02018 Carbohydrate binding domain ACP_2794 PF00356 Bacterial regulatory proteins, lacI family ACP_2796 PF00107 Zinc-binding dehydrogenase ACP_2796 PF08240 Alcohol dehydrogenase GroES-like domain ACP_2801 PF02585 GlcNAc-PI de-N-acetylase ACP_2802 PF01351 Ribonuclease HII ACP_2803 PF01245 Ribosomal protein L19 ACP_2806 PF01746 tRNA (Guanine-1)-methyltransferase ACP_2807 PF05239 PRC-barrel domain ACP_2807 PF01782 RimM N-terminal domain ACP_2809 PF00886 Ribosomal protein S16 ACP_2810 PF14827 Double sensory domain of two-component sensor kinase ACP_2810 PF00672 HAMP domain ACP_2810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2810 PF00512 His Kinase A (phospho-acceptor) domain ACP_2810 PF13426 PAS domain ACP_2811 PF00501 AMP-binding enzyme ACP_2811 PF13193 AMP-binding enzyme C-terminal domain ACP_2811 PF16177 Acetyl-coenzyme A synthetase N-terminus ACP_2812 PF02348 Cytidylyltransferase ACP_2813 PF07690 Major Facilitator Superfamily ACP_2817 PF00248 Aldo/keto reductase family ACP_2818 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACP_2818 PF02779 Transketolase, pyrimidine binding domain ACP_2818 PF02780 Transketolase, C-terminal domain ACP_2819 PF02803 Thiolase, C-terminal domain ACP_2819 PF00108 Thiolase, N-terminal domain ACP_2820 PF02770 Acyl-CoA dehydrogenase, middle domain ACP_2820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACP_2820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACP_2822 PF09286 Pro-kumamolisin, activation domain ACP_2822 PF00082 Subtilase family ACP_2823 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ACP_2823 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ACP_2824 PF01791 DeoC/LacD family aldolase ACP_2825 PF03725 3' exoribonuclease family, domain 2 ACP_2825 PF01138 3' exoribonuclease family, domain 1 ACP_2828 PF00072 Response regulator receiver domain ACP_2828 PF00158 Sigma-54 interaction domain ACP_2828 PF02954 Bacterial regulatory protein, Fis family ACP_2831 PF14814 Bifunctional transglycosylase second domain ACP_2831 PF00912 Transglycosylase ACP_2831 PF00905 Penicillin binding protein transpeptidase domain ACP_2832 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACP_2832 PF04073 Aminoacyl-tRNA editing domain ACP_2832 PF03129 Anticodon binding domain ACP_2834 PF03061 Thioesterase superfamily ACP_2835 PF01850 PIN domain ACP_2837 PF02310 B12 binding domain ACP_2837 PF01642 Methylmalonyl-CoA mutase ACP_2838 PF00072 Response regulator receiver domain ACP_2838 PF00486 Transcriptional regulatory protein, C terminal ACP_2839 PF00348 Polyprenyl synthetase ACP_2840 PF04461 Protein of unknown function (DUF520) ACP_2841 PF01026 TatD related DNase ACP_2842 PF08264 Anticodon-binding domain of tRNA ACP_2842 PF09334 tRNA synthetases class I (M) ACP_2842 PF01588 Putative tRNA binding domain ACP_2843 PF00750 tRNA synthetases class I (R) ACP_2843 PF05746 DALR anticodon binding domain ACP_2843 PF03485 Arginyl tRNA synthetase N terminal domain ACP_2846 PF00464 Serine hydroxymethyltransferase ACP_2849 PF02934 GatB/GatE catalytic domain ACP_2849 PF02637 GatB domain ACP_2851 PF01435 Peptidase family M48 ACP_2851 PF16491 CAAX prenyl protease N-terminal, five membrane helices ACP_2852 PF03330 Lytic transglycolase ACP_2857 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACP_2857 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_2860 PF12706 Beta-lactamase superfamily domain ACP_2861 PF03099 Biotin/lipoate A/B protein ligase family ACP_2862 PF00486 Transcriptional regulatory protein, C terminal ACP_2862 PF00072 Response regulator receiver domain ACP_2863 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_2863 PF00672 HAMP domain ACP_2863 PF00512 His Kinase A (phospho-acceptor) domain ACP_2864 PF02705 K+ potassium transporter ACP_2868 PF01293 Phosphoenolpyruvate carboxykinase ACP_2871 PF00156 Phosphoribosyl transferase domain ACP_2872 PF00708 Acylphosphatase ACP_2876 PF09285 Elongation factor P, C-terminal ACP_2876 PF08207 Elongation factor P (EF-P) KOW-like domain ACP_2876 PF01132 Elongation factor P (EF-P) OB domain ACP_2879 PF00117 Glutamine amidotransferase class-I ACP_2883 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACP_2883 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACP_2887 PF01066 CDP-alcohol phosphatidyltransferase ACP_2888 PF13291 ACT domain ACP_2888 PF04607 Region found in RelA / SpoT proteins ACP_2888 PF02824 TGS domain ACP_2889 PF00899 ThiF family ACP_2889 PF00581 Rhodanese-like domain ACP_2890 PF02597 ThiS family ACP_2892 PF00291 Pyridoxal-phosphate dependent enzyme ACP_2896 PF17755 UvrA DNA-binding domain ACP_2896 PF17760 UvrA interaction domain ACP_2901 PF00881 Nitroreductase family ACP_2902 PF13344 Haloacid dehalogenase-like hydrolase ACP_2902 PF00293 NUDIX domain ACP_2904 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACP_2908 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACP_2909 PF00586 AIR synthase related protein, N-terminal domain ACP_2909 PF02769 AIR synthase related protein, C-terminal domain ACP_2910 PF01476 LysM domain ACP_2910 PF01551 Peptidase family M23 ACP_2910 PF08525 Opacity-associated protein A N-terminal motif ACP_2919 PF03143 Elongation factor Tu C-terminal domain ACP_2919 PF03144 Elongation factor Tu domain 2 ACP_2919 PF00009 Elongation factor Tu GTP binding domain ACP_2920 PF00471 Ribosomal protein L33 ACP_2923 PF00467 KOW motif ACP_2923 PF02357 Transcription termination factor nusG ACP_2924 PF03946 Ribosomal protein L11, N-terminal domain ACP_2924 PF00298 Ribosomal protein L11, RNA binding domain ACP_2925 PF00687 Ribosomal protein L1p/L10e family ACP_2926 PF00466 Ribosomal protein L10 ACP_2927 PF00542 Ribosomal protein L7/L12 C-terminal domain ACP_2927 PF16320 Ribosomal protein L7/L12 dimerisation domain ACP_2928 PF04563 RNA polymerase beta subunit ACP_2928 PF04560 RNA polymerase Rpb2, domain 7 ACP_2928 PF10385 RNA polymerase beta subunit external 1 domain ACP_2928 PF04565 RNA polymerase Rpb2, domain 3 ACP_2928 PF04561 RNA polymerase Rpb2, domain 2 ACP_2928 PF00562 RNA polymerase Rpb2, domain 6 ACP_2929 PF04998 RNA polymerase Rpb1, domain 5 ACP_2929 PF05000 RNA polymerase Rpb1, domain 4 ACP_2929 PF04997 RNA polymerase Rpb1, domain 1 ACP_2929 PF04983 RNA polymerase Rpb1, domain 3 ACP_2929 PF00623 RNA polymerase Rpb1, domain 2 ACP_2931 PF08267 Cobalamin-independent synthase, N-terminal domain ACP_2931 PF01717 Cobalamin-independent synthase, Catalytic domain ACP_2932 PF00248 Aldo/keto reductase family ACP_2934 PF00593 TonB dependent receptor ACP_2936 PF04055 Radical SAM superfamily ACP_2936 PF06463 Molybdenum Cofactor Synthesis C ACP_2942 PF00440 Bacterial regulatory proteins, tetR family ACP_2943 PF07690 Major Facilitator Superfamily ACP_2944 PF00572 Ribosomal protein L13 ACP_2945 PF00380 Ribosomal protein S9/S16 ACP_2946 PF00318 Ribosomal protein S2 ACP_2947 PF00889 Elongation factor TS ACP_2948 PF13180 PDZ domain ACP_2949 PF00696 Amino acid kinase family ACP_2950 PF01757 Acyltransferase family ACP_2953 PF01431 Peptidase family M13 ACP_2953 PF05649 Peptidase family M13 ACP_2957 PF00933 Glycosyl hydrolase family 3 N terminal domain ACP_2957 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACP_2957 PF14310 Fibronectin type III-like domain ACP_2958 PF12849 PBP superfamily domain ACP_2959 PF00883 Cytosol aminopeptidase family, catalytic domain ACP_2959 PF02789 Cytosol aminopeptidase family, N-terminal domain ACP_2960 PF01668 SmpB protein ACP_2962 PF07963 Prokaryotic N-terminal methylation motif ACP_2962 PF08334 Type II secretion system (T2SS), protein G ACP_2963 PF08334 Type II secretion system (T2SS), protein G ACP_2963 PF07963 Prokaryotic N-terminal methylation motif ACP_2964 PF01926 50S ribosome-binding GTPase ACP_2965 PF17392 Urocanase C-terminal domain ACP_2965 PF01175 Urocanase Rossmann-like domain ACP_2965 PF17391 Urocanase N-terminal domain ACP_2967 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACP_2967 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACP_2968 PF00753 Metallo-beta-lactamase superfamily ACP_2970 PF01180 Dihydroorotate dehydrogenase ACP_2971 PF02358 Trehalose-phosphatase ACP_2972 PF00982 Glycosyltransferase family 20 ACP_2973 PF01740 STAS domain ACP_2976 PF00571 CBS domain ACP_2976 PF01769 Divalent cation transporter ACP_2976 PF03448 MgtE intracellular N domain ACP_2977 PF01566 Natural resistance-associated macrophage protein ACP_2978 PF00293 NUDIX domain ACP_2981 PF00589 Phage integrase family ACP_2981 PF02899 Phage integrase, N-terminal SAM-like domain ACP_2982 PF02899 Phage integrase, N-terminal SAM-like domain ACP_2982 PF00589 Phage integrase family ACP_2983 PF07516 SecA Wing and Scaffold domain ACP_2983 PF07517 SecA DEAD-like domain ACP_2983 PF02810 SEC-C motif ACP_2983 PF01043 SecA preprotein cross-linking domain ACP_2985 PF01300 Telomere recombination ACP_2985 PF03481 Putative GTP-binding controlling metal-binding ACP_2987 PF09115 DNA polymerase III, delta subunit, C terminal ACP_2988 PF00067 Cytochrome P450 ACP_2989 PF02223 Thymidylate kinase ACP_2991 PF14698 Argininosuccinate lyase C-terminal ACP_2991 PF00206 Lyase ACP_2992 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACP_2992 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACP_2993 PF00202 Aminotransferase class-III ACP_2994 PF00696 Amino acid kinase family ACP_2995 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACP_2995 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACP_2996 PF02863 Arginine repressor, C-terminal domain ACP_2996 PF01316 Arginine repressor, DNA binding domain ACP_2997 PF00310 Glutamine amidotransferases class-II ACP_2997 PF04898 Glutamate synthase central domain ACP_2997 PF01645 Conserved region in glutamate synthase ACP_2997 PF01493 GXGXG motif ACP_3000 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ACP_3000 PF00326 Prolyl oligopeptidase family ACP_3004 PF00005 ABC transporter ACP_3006 PF04011 LemA family ACP_3008 PF02403 Seryl-tRNA synthetase N-terminal domain ACP_3008 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACP_3012 PF01522 Polysaccharide deacetylase ACP_3016 PF00723 Glycosyl hydrolases family 15 ACP_3017 PF01925 Sulfite exporter TauE/SafE ACP_3018 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACP_3018 PF14824 Sirohaem biosynthesis protein central ACP_3018 PF10414 Sirohaem synthase dimerisation region ACP_3020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACP_3020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACP_3025 PF07690 Major Facilitator Superfamily ACP_3026 PF00221 Aromatic amino acid lyase ACP_3028 PF00282 Pyridoxal-dependent decarboxylase conserved domain ACP_3033 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_3035 PF14489 QueF-like protein ACP_3036 PF07690 Major Facilitator Superfamily ACP_3037 PF00535 Glycosyl transferase family 2 ACP_3039 PF04551 GcpE protein ACP_3043 PF00578 AhpC/TSA family ACP_3044 PF02627 Carboxymuconolactone decarboxylase family ACP_3048 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_3048 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_3049 PF00174 Oxidoreductase molybdopterin binding domain ACP_3050 PF01794 Ferric reductase like transmembrane component ACP_3052 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal ACP_3052 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACP_3053 PF00374 Nickel-dependent hydrogenase ACP_3054 PF01292 Prokaryotic cytochrome b561 ACP_3055 PF01750 Hydrogenase maturation protease ACP_3056 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACP_3057 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACP_3058 PF02769 AIR synthase related protein, C-terminal domain ACP_3058 PF00586 AIR synthase related protein, N-terminal domain ACP_3059 PF01924 Hydrogenase formation hypA family ACP_3060 PF01455 HupF/HypC family ACP_3061 PF07503 HypF finger ACP_3061 PF01300 Telomere recombination ACP_3061 PF17788 HypF Kae1-like domain ACP_3061 PF00708 Acylphosphatase ACP_3064 PF07690 Major Facilitator Superfamily ACP_3068 PF00311 Phosphoenolpyruvate carboxylase ACP_3071 PF12848 ABC transporter ACP_3071 PF00005 ABC transporter ACP_3071 PF16326 ABC transporter C-terminal domain ACP_3077 PF01047 MarR family ACP_3078 PF04264 YceI-like domain ACP_3079 PF02678 Pirin ACP_3079 PF05726 Pirin C-terminal cupin domain ACP_3082 PF01197 Ribosomal protein L31 ACP_3084 PF01207 Dihydrouridine synthase (Dus) ACP_3088 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACP_3088 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACP_3090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACP_3090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACP_3090 PF00205 Thiamine pyrophosphate enzyme, central domain ACP_3091 PF13378 Enolase C-terminal domain-like ACP_3091 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ACP_3094 PF05199 GMC oxidoreductase ACP_3094 PF00732 GMC oxidoreductase ACP_3095 PF00912 Transglycosylase ACP_3096 PF00764 Arginosuccinate synthase ACP_3097 PF13472 GDSL-like Lipase/Acylhydrolase family ACP_3097 PF17996 Carbohydrate esterase 2 N-terminal ACP_3098 PF00440 Bacterial regulatory proteins, tetR family ACP_3099 PF02525 Flavodoxin-like fold ACP_3104 PF01521 Iron-sulphur cluster biosynthesis ACP_3110 PF00437 Type II/IV secretion system protein ACP_3110 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ACP_3111 PF00482 Type II secretion system (T2SS), protein F ACP_3115 PF01370 NAD dependent epimerase/dehydratase family ACP_3117 PF08331 Domain of unknown function (DUF1730) ACP_3118 PF00313 'Cold-shock' DNA-binding domain ACP_3119 PF03631 Virulence factor BrkB ACP_3120 PF07228 Stage II sporulation protein E (SpoIIE) ACP_3120 PF00672 HAMP domain ACP_3123 PF13180 PDZ domain ACP_3123 PF03572 Peptidase family S41 ACP_3124 PF00639 PPIC-type PPIASE domain ACP_3124 PF09312 SurA N-terminal domain ACP_3125 PF01966 HD domain ACP_3127 PF01264 Chorismate synthase ACP_3128 PF01327 Polypeptide deformylase ACP_3129 PF00551 Formyl transferase ACP_3129 PF02911 Formyl transferase, C-terminal domain ACP_3130 PF01189 16S rRNA methyltransferase RsmB/F ACP_3130 PF01029 NusB family ACP_3133 PF16916 Dimerisation domain of Zinc Transporter ACP_3133 PF01545 Cation efflux family ACP_3134 PF01209 ubiE/COQ5 methyltransferase family ACP_3135 PF01761 3-dehydroquinate synthase ACP_3136 PF00890 FAD binding domain ACP_3136 PF02910 Fumarate reductase flavoprotein C-term ACP_3137 PF00857 Isochorismatase family ACP_3138 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ACP_3143 PF00902 Sec-independent protein translocase protein (TatC) ACP_3144 PF02416 mttA/Hcf106 family ACP_3145 PF02445 Quinolinate synthetase A protein ACP_3149 PF00795 Carbon-nitrogen hydrolase ACP_3153 PF04055 Radical SAM superfamily ACP_3156 PF02780 Transketolase, C-terminal domain ACP_3156 PF02779 Transketolase, pyrimidine binding domain ACP_3157 PF03030 Inorganic H+ pyrophosphatase ACP_3158 PF00924 Mechanosensitive ion channel ACP_3159 PF03853 YjeF-related protein N-terminus ACP_3159 PF01256 Carbohydrate kinase ACP_3160 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACP_3161 PF00448 SRP54-type protein, GTPase domain ACP_3161 PF02881 SRP54-type protein, helical bundle domain ACP_3161 PF02978 Signal peptide binding domain ACP_3163 PF14659 Phage integrase, N-terminal SAM-like domain ACP_3163 PF00589 Phage integrase family ACP_3164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACP_3164 PF03466 LysR substrate binding domain ACP_3167 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ACP_3174 PF13744 Helix-turn-helix domain ACP_3176 PF00437 Type II/IV secretion system protein ACP_3182 PF18340 DNA relaxase TraI 2B/2B-like domain ACP_3182 PF07057 DNA helicase TraI ACP_3182 PF18272 single-stranded DNA binding TraI N-terminal subdomain ACP_3182 PF08751 TrwC relaxase ACP_3187 PF00266 Aminotransferase class-V ACP_3193 PF01548 Transposase ACP_3193 PF02371 Transposase IS116/IS110/IS902 family ACP_3196 PF02195 ParB-like nuclease domain ACP_3196 PF17762 HTH domain found in ParB protein ACP_3197 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACP_3197 PF14579 Helix-hairpin-helix motif ACP_3197 PF02811 PHP domain ACP_3197 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACP_3199 PF00154 recA bacterial DNA recombination protein ACP_3207 PF00005 ABC transporter ACP_3207 PF02687 FtsX-like permease family ACP_3207 PF12704 MacB-like periplasmic core domain ACP_3210 PF10137 Predicted nucleotide-binding protein containing TIR-like domain ACP_3213 PF02687 FtsX-like permease family ACP_3213 PF12704 MacB-like periplasmic core domain ACP_3214 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACP_3222 PF13537 Glutamine amidotransferase domain ACP_3222 PF00733 Asparagine synthase ACP_3235 PF01695 IstB-like ATP binding protein ACP_3239 PF07057 DNA helicase TraI ACP_3239 PF18340 DNA relaxase TraI 2B/2B-like domain ACP_3239 PF08751 TrwC relaxase ACP_3239 PF18272 single-stranded DNA binding TraI N-terminal subdomain ACP_3244 PF13361 UvrD-like helicase C-terminal domain ACP_3244 PF00580 UvrD/REP helicase N-terminal domain ACP_3245 PF13175 AAA ATPase domain ACP_3249 PF01695 IstB-like ATP binding protein ACP_3253 PF00437 Type II/IV secretion system protein ACP_3261 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ACP_3271 PF12728 Helix-turn-helix domain ACP_3272 PF00701 Dihydrodipicolinate synthetase family ACP_3273 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_3273 PF17806 Sarcosine oxidase A3 domain ACP_3274 PF01266 FAD dependent oxidoreductase ACP_3275 PF05544 Proline racemase ACP_3279 PF07690 Major Facilitator Superfamily ACP_3280 PF00107 Zinc-binding dehydrogenase ACP_3280 PF08240 Alcohol dehydrogenase GroES-like domain ACP_3284 PF01557 Fumarylacetoacetate (FAA) hydrolase family ACP_3285 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ACP_3285 PF08666 SAF domain ACP_3288 PF03861 ANTAR domain ACP_3288 PF00072 Response regulator receiver domain ACP_3289 PF08379 Bacterial transglutaminase-like N-terminal region ACP_3289 PF01841 Transglutaminase-like superfamily ACP_3291 PF14403 Circularly permuted ATP-grasp type 2 ACP_3294 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACP_3297 PF02142 MGS-like domain ACP_3297 PF01808 AICARFT/IMPCHase bienzyme ACP_3299 PF01381 Helix-turn-helix ACP_3300 PF01738 Dienelactone hydrolase family ACP_3304 PF06736 Protein of unknown function (DUF1211) ACP_3305 PF09844 Uncharacterized conserved protein (COG2071) ACP_3306 PF02511 Thymidylate synthase complementing protein ACP_3307 PF00154 recA bacterial DNA recombination protein ACP_3308 PF01467 Cytidylyltransferase-like ACP_3309 PF00155 Aminotransferase class I and II ACP_3310 PF13419 Haloacid dehalogenase-like hydrolase ACP_3311 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACP_3312 PF01895 PhoU domain ACP_3313 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACP_3313 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACP_3315 PF00571 CBS domain ACP_3315 PF00478 IMP dehydrogenase / GMP reductase domain ACP_3316 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACP_3317 PF02797 Chalcone and stilbene synthases, C-terminal domain ACP_3317 PF00195 Chalcone and stilbene synthases, N-terminal domain ACP_3318 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ACP_3319 PF01638 HxlR-like helix-turn-helix ACP_3320 PF05368 NmrA-like family ACP_3322 PF00135 Carboxylesterase family ACP_3325 PF17384 RimP C-terminal SH3 domain ACP_3325 PF02576 RimP N-terminal domain ACP_3326 PF00575 S1 RNA binding domain ACP_3326 PF13184 NusA-like KH domain ACP_3326 PF08529 NusA N-terminal domain ACP_3327 PF03144 Elongation factor Tu domain 2 ACP_3327 PF00009 Elongation factor Tu GTP binding domain ACP_3327 PF11987 Translation-initiation factor 2 ACP_3327 PF04760 Translation initiation factor IF-2, N-terminal region ACP_3328 PF02401 LytB protein ACP_3329 PF13249 Squalene-hopene cyclase N-terminal domain ACP_3329 PF13243 Squalene-hopene cyclase C-terminal domain ACP_3330 PF04055 Radical SAM superfamily ACP_3330 PF06463 Molybdenum Cofactor Synthesis C ACP_3334 PF00216 Bacterial DNA-binding protein ACP_3335 PF00692 dUTPase ACP_3336 PF00072 Response regulator receiver domain ACP_3336 PF00196 Bacterial regulatory proteins, luxR family ACP_3337 PF02310 B12 binding domain ACP_3337 PF02607 B12 binding domain ACP_3337 PF02965 Vitamin B12 dependent methionine synthase, activation domain ACP_3337 PF00809 Pterin binding enzyme ACP_3337 PF02574 Homocysteine S-methyltransferase ACP_3338 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACP_3338 PF14824 Sirohaem biosynthesis protein central ACP_3338 PF10414 Sirohaem synthase dimerisation region ACP_3340 PF13533 Biotin-lipoyl like ACP_3341 PF00873 AcrB/AcrD/AcrF family ACP_3342 PF00873 AcrB/AcrD/AcrF family ACP_3343 PF02321 Outer membrane efflux protein ACP_3345 PF01471 Putative peptidoglycan binding domain ACP_3345 PF17820 PDZ domain ACP_3345 PF03572 Peptidase family S41 ACP_3346 PF00912 Transglycosylase ACP_3346 PF00905 Penicillin binding protein transpeptidase domain ACP_3347 PF01757 Acyltransferase family ACP_3351 PF03960 ArsC family ACP_3352 PF01687 Riboflavin kinase ACP_3352 PF06574 FAD synthetase ACP_3353 PF03099 Biotin/lipoate A/B protein ligase family ACP_3353 PF12706 Beta-lactamase superfamily domain ACP_3355 PF08669 Glycine cleavage T-protein C-terminal barrel domain ACP_3355 PF01571 Aminomethyltransferase folate-binding domain ACP_3357 PF01048 Phosphorylase superfamily ACP_3360 PF02308 MgtC family ACP_3361 PF01678 Diaminopimelate epimerase ACP_3362 PF02016 LD-carboxypeptidase N-terminal domain ACP_3362 PF17676 LD-carboxypeptidase C-terminal domain ACP_3363 PF08245 Mur ligase middle domain ACP_3363 PF02875 Mur ligase family, glutamate ligase domain ACP_3363 PF01225 Mur ligase family, catalytic domain ACP_3367 PF01145 SPFH domain / Band 7 family ACP_3367 PF16200 C-terminal region of band_7 ACP_3368 PF01972 Serine dehydrogenase proteinase ACP_3368 PF01957 NfeD-like C-terminal, partner-binding ACP_3373 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACP_3376 PF00535 Glycosyl transferase family 2 ACP_3385 PF00534 Glycosyl transferases group 1 ACP_3385 PF13439 Glycosyltransferase Family 4 ACP_3388 PF03069 Acetamidase/Formamidase family ACP_3390 PF02597 ThiS family ACP_3391 PF00155 Aminotransferase class I and II ACP_3395 PF00692 dUTPase ACP_3401 PF13520 Amino acid permease ACP_3405 PF00919 Uncharacterized protein family UPF0004 ACP_3405 PF18693 TRAM domain ACP_3405 PF04055 Radical SAM superfamily ACP_3406 PF03884 DNA gyrase inhibitor YacG ACP_3409 PF00994 Probable molybdopterin binding domain ACP_3409 PF02464 Competence-damaged protein ACP_3410 PF02660 Glycerol-3-phosphate acyltransferase ACP_3411 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACP_3411 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACP_3413 PF02881 SRP54-type protein, helical bundle domain ACP_3413 PF00448 SRP54-type protein, GTPase domain ACP_3414 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACP_3414 PF01872 RibD C-terminal domain ACP_3415 PF00677 Lumazine binding domain ACP_3418 PF02481 DNA recombination-mediator protein A ACP_3418 PF17782 DprA winged helix domain ACP_3419 PF01751 Toprim domain ACP_3419 PF01396 Topoisomerase DNA binding C4 zinc finger ACP_3419 PF01131 DNA topoisomerase ACP_3420 PF04221 RelB antitoxin ACP_3425 PF00563 EAL domain ACP_3425 PF00990 Diguanylate cyclase, GGDEF domain ACP_3425 PF03707 Bacterial signalling protein N terminal repeat ACP_3430 PF01229 Glycosyl hydrolases family 39 ACP_3431 PF00004 ATPase family associated with various cellular activities (AAA) ACP_3431 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACP_3431 PF05362 Lon protease (S16) C-terminal proteolytic domain ACP_3432 PF10431 C-terminal, D2-small domain, of ClpB protein ACP_3432 PF06689 ClpX C4-type zinc finger ACP_3432 PF07724 AAA domain (Cdc48 subfamily) ACP_3433 PF00574 Clp protease ACP_3434 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACP_3434 PF05697 Bacterial trigger factor protein (TF) ACP_3434 PF05698 Bacterial trigger factor protein (TF) C-terminus ACP_3435 PF03471 Transporter associated domain ACP_3435 PF02080 TrkA-C domain ACP_3435 PF00999 Sodium/hydrogen exchanger family ACP_3437 PF07690 Major Facilitator Superfamily ACP_3438 PF00484 Carbonic anhydrase ACP_3440 PF00144 Beta-lactamase ACP_3441 PF01022 Bacterial regulatory protein, arsR family ACP_3443 PF01758 Sodium Bile acid symporter family ACP_3446 PF00300 Histidine phosphatase superfamily (branch 1) ACP_3447 PF02541 Ppx/GppA phosphatase family ACP_3448 PF00578 AhpC/TSA family ACP_3449 PF02503 Polyphosphate kinase middle domain ACP_3449 PF13090 Polyphosphate kinase C-terminal domain 2 ACP_3449 PF13089 Polyphosphate kinase N-terminal domain ACP_3449 PF17941 Polyphosphate kinase C-terminal domain 1 ACP_3452 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_3452 PF00529 HlyD membrane-fusion protein of T1SS ACP_3453 PF00581 Rhodanese-like domain ACP_3455 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACP_3456 PF00037 4Fe-4S binding domain ACP_3458 PF03279 Bacterial lipid A biosynthesis acyltransferase ACP_3459 PF00132 Bacterial transferase hexapeptide (six repeats) ACP_3459 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACP_3461 PF02525 Flavodoxin-like fold ACP_3462 PF00989 PAS fold ACP_3462 PF00512 His Kinase A (phospho-acceptor) domain ACP_3462 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACP_3464 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACP_3464 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACP_3465 PF10369 Small subunit of acetolactate synthase ACP_3466 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACP_3466 PF00205 Thiamine pyrophosphate enzyme, central domain ACP_3466 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACP_3467 PF00920 Dehydratase family ACP_3468 PF00694 Aconitase C-terminal domain ACP_3469 PF00330 Aconitase family (aconitate hydratase) ACP_3470 PF00180 Isocitrate/isopropylmalate dehydrogenase ACP_3471 PF00682 HMGL-like ACP_3471 PF08502 LeuA allosteric (dimerisation) domain ACP_3472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACP_3472 PF03466 LysR substrate binding domain ACP_3478 PF16363 GDP-mannose 4,6 dehydratase ACP_3480 PF01713 Smr domain ACP_3480 PF00488 MutS domain V ACP_3481 PF00294 pfkB family carbohydrate kinase ACP_3482 PF01791 DeoC/LacD family aldolase ACP_3483 PF00171 Aldehyde dehydrogenase family ACP_3484 PF02811 PHP domain ACP_3484 PF14579 Helix-hairpin-helix motif ACP_3484 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACP_3484 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACP_3486 PF04264 YceI-like domain ACP_3488 PF02684 Lipid-A-disaccharide synthetase ACP_3489 PF00722 Glycosyl hydrolases family 16 ACP_3490 PF00664 ABC transporter transmembrane region ACP_3490 PF00005 ABC transporter ACP_3491 PF04055 Radical SAM superfamily ACP_3491 PF06969 HemN C-terminal domain ACP_3493 PF08240 Alcohol dehydrogenase GroES-like domain ACP_3493 PF00107 Zinc-binding dehydrogenase ACP_3495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACP_3496 PF00873 AcrB/AcrD/AcrF family ACP_3499 PF00593 TonB dependent receptor ACP_3505 PF02735 Ku70/Ku80 beta-barrel domain ACP_3506 PF01068 ATP dependent DNA ligase domain ACP_3506 PF13298 DNA polymerase Ligase (LigD) ACP_3506 PF04679 ATP dependent DNA ligase C terminal region ACP_3512 PF00144 Beta-lactamase ACP_3514 PF00005 ABC transporter ACP_3514 PF02687 FtsX-like permease family ACP_3514 PF12704 MacB-like periplasmic core domain ACP_3518 PF00326 Prolyl oligopeptidase family ACP_3518 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ACP_3519 PF00155 Aminotransferase class I and II ACP_3519 PF00392 Bacterial regulatory proteins, gntR family ACP_3520 PF13520 Amino acid permease ACP_3522 PF07715 TonB-dependent Receptor Plug Domain ACP_3522 PF00593 TonB dependent receptor ACP_3523 PF07969 Amidohydrolase family ACP_3529 PF04542 Sigma-70 region 2 ACP_3529 PF08281 Sigma-70, region 4 ACP_3532 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACP_3536 PF00196 Bacterial regulatory proteins, luxR family ACP_3536 PF00072 Response regulator receiver domain ACP_3537 PF07730 Histidine kinase ACP_3542 PF07687 Peptidase dimerisation domain ACP_3542 PF01546 Peptidase family M20/M25/M40 ACP_3545 PF12804 MobA-like NTP transferase domain ACP_3546 PF00005 ABC transporter